Query 012721
Match_columns 457
No_of_seqs 488 out of 1544
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 14:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dw8_B Serine/threonine-protei 100.0 3.4E-45 1.2E-49 350.1 35.3 397 8-448 6-437 (447)
2 2ynn_A Coatomer subunit beta'; 100.0 5.9E-43 2E-47 316.7 38.0 271 29-441 10-284 (304)
3 3ow8_A WD repeat-containing pr 100.0 1.1E-42 3.7E-47 317.1 37.4 273 29-444 29-307 (321)
4 1vyh_C Platelet-activating fac 100.0 5.8E-43 2E-47 330.1 36.1 277 29-452 105-403 (410)
5 1got_B GT-beta; complex (GTP-b 100.0 4.8E-41 1.6E-45 309.1 37.4 276 29-444 52-329 (340)
6 4g56_B MGC81050 protein; prote 100.0 1E-41 3.5E-46 315.4 31.4 280 29-444 39-329 (357)
7 1nr0_A Actin interacting prote 100.0 6.6E-41 2.2E-45 332.3 39.3 338 28-444 143-597 (611)
8 4gqb_B Methylosome protein 50; 100.0 5.9E-41 2E-45 307.9 35.8 285 29-443 27-315 (344)
9 1nr0_A Actin interacting prote 100.0 2E-40 6.8E-45 328.8 40.0 352 28-444 55-508 (611)
10 2pbi_B Guanine nucleotide-bind 100.0 5E-40 1.7E-44 303.8 38.2 279 29-444 61-343 (354)
11 3frx_A Guanine nucleotide-bind 100.0 4.7E-40 1.6E-44 299.6 37.2 297 29-416 14-318 (319)
12 4ery_A WD repeat-containing pr 100.0 1.6E-39 5.4E-44 295.6 39.0 275 29-445 20-297 (312)
13 3fm0_A Protein CIAO1; WDR39,SG 100.0 6.3E-40 2.1E-44 302.2 35.9 311 30-417 13-337 (345)
14 3iz6_a 40S ribosomal protein R 100.0 1.6E-40 5.4E-45 310.4 31.6 300 29-416 63-376 (380)
15 4aow_A Guanine nucleotide-bind 100.0 1.9E-38 6.6E-43 291.9 39.4 302 28-417 34-339 (340)
16 2ymu_A WD-40 repeat protein; u 100.0 1.7E-38 5.8E-43 313.7 40.7 306 29-444 259-566 (577)
17 2xzm_R RACK1; ribosome, transl 100.0 1.5E-38 5.1E-43 292.9 37.2 304 30-416 19-341 (343)
18 1erj_A Transcriptional repress 100.0 1.6E-38 5.4E-43 298.3 36.3 283 29-438 61-363 (393)
19 4gqb_B Methylosome protein 50; 100.0 1.8E-38 6.1E-43 291.4 35.4 249 29-416 79-332 (344)
20 2ymu_A WD-40 repeat protein; u 100.0 6E-38 2E-42 309.8 41.3 321 28-444 12-402 (577)
21 3ow8_A WD repeat-containing pr 100.0 2.7E-38 9.3E-43 287.9 33.3 242 29-414 77-320 (321)
22 1vyh_C Platelet-activating fac 100.0 2.5E-38 8.5E-43 298.5 33.2 242 29-414 147-410 (410)
23 2hes_X YDR267CP; beta-propelle 100.0 9.6E-38 3.3E-42 285.8 34.0 284 30-444 12-314 (330)
24 1got_B GT-beta; complex (GTP-b 100.0 1.3E-37 4.5E-42 286.2 34.3 244 30-412 95-340 (340)
25 2pm7_B Protein transport prote 100.0 8.6E-38 3E-42 281.8 32.3 258 29-416 6-286 (297)
26 2pm9_A Protein WEB1, protein t 100.0 2.9E-38 1E-42 299.0 30.4 329 29-445 9-401 (416)
27 3dm0_A Maltose-binding peripla 100.0 5.2E-37 1.8E-41 309.2 38.2 307 28-414 378-692 (694)
28 4e54_B DNA damage-binding prot 100.0 1.7E-37 5.8E-42 295.4 31.6 287 30-446 117-419 (435)
29 3bg1_A Protein SEC13 homolog; 100.0 9.9E-38 3.4E-42 283.9 28.6 258 29-416 10-294 (316)
30 3zwl_B Eukaryotic translation 100.0 2.3E-36 8E-41 280.9 38.5 294 28-416 28-347 (369)
31 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-37 9.3E-42 287.8 31.9 294 31-417 7-363 (372)
32 4g56_B MGC81050 protein; prote 100.0 4.4E-37 1.5E-41 284.3 31.4 253 28-419 90-347 (357)
33 1erj_A Transcriptional repress 100.0 1.2E-36 4.2E-41 285.4 34.0 259 32-416 123-390 (393)
34 2pbi_B Guanine nucleotide-bind 100.0 3.8E-36 1.3E-40 277.8 34.3 247 30-412 104-354 (354)
35 1gxr_A ESG1, transducin-like e 100.0 3.7E-35 1.3E-39 269.4 38.8 272 29-444 48-323 (337)
36 3ei3_B DNA damage-binding prot 100.0 6.8E-36 2.3E-40 279.7 33.2 289 29-445 70-370 (383)
37 1sq9_A Antiviral protein SKI8; 100.0 9.7E-36 3.3E-40 280.0 34.3 306 30-416 14-396 (397)
38 1r5m_A SIR4-interacting protei 100.0 6E-36 2E-40 283.7 33.0 327 28-444 41-411 (425)
39 3iz6_a 40S ribosomal protein R 100.0 1.1E-35 3.7E-40 277.7 33.8 294 91-444 56-361 (380)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.5E-35 5.3E-40 272.9 34.2 288 92-444 6-321 (345)
41 1pgu_A Actin interacting prote 100.0 4.5E-35 1.6E-39 291.3 39.8 348 29-444 15-600 (615)
42 2oaj_A Protein SNI1; WD40 repe 100.0 6.6E-36 2.3E-40 307.1 33.0 212 29-302 14-245 (902)
43 2ynn_A Coatomer subunit beta'; 100.0 2.2E-35 7.5E-40 266.9 31.7 235 93-444 5-245 (304)
44 2hes_X YDR267CP; beta-propelle 100.0 1.9E-35 6.4E-40 270.6 31.3 260 31-415 57-328 (330)
45 3dwl_C Actin-related protein 2 100.0 2.8E-36 9.7E-41 281.6 24.2 254 31-356 10-280 (377)
46 2j04_B YDR362CP, TAU91; beta p 100.0 4E-36 1.4E-40 289.3 24.8 261 28-414 129-427 (524)
47 1r5m_A SIR4-interacting protei 100.0 1.5E-34 5E-39 274.1 35.1 280 31-414 107-424 (425)
48 3jrp_A Fusion protein of prote 100.0 8.6E-35 3E-39 271.5 32.3 258 28-416 7-288 (379)
49 3mkq_A Coatomer beta'-subunit; 100.0 1.1E-34 3.6E-39 298.2 36.0 270 29-441 10-284 (814)
50 3i2n_A WD repeat-containing pr 100.0 7.3E-35 2.5E-39 269.7 31.0 275 30-443 16-337 (357)
51 3gre_A Serine/threonine-protei 100.0 1.5E-34 5E-39 275.6 33.9 303 29-444 60-426 (437)
52 1yfq_A Cell cycle arrest prote 100.0 8.1E-35 2.8E-39 267.9 30.6 279 30-444 9-309 (342)
53 3f3f_A Nucleoporin SEH1; struc 100.0 3.4E-34 1.2E-38 264.0 34.2 270 29-417 8-339 (351)
54 2pm9_A Protein WEB1, protein t 100.0 1.1E-35 3.8E-40 281.3 24.6 311 25-416 60-415 (416)
55 4ery_A WD repeat-containing pr 100.0 1.1E-33 3.7E-38 257.0 36.0 246 29-414 62-311 (312)
56 3odt_A Protein DOA1; ubiquitin 100.0 5.1E-34 1.7E-38 259.1 33.8 265 30-444 16-283 (313)
57 4aez_A CDC20, WD repeat-contai 100.0 2.5E-34 8.6E-39 270.6 32.5 294 35-433 96-398 (401)
58 3k26_A Polycomb protein EED; W 100.0 4.2E-34 1.4E-38 265.5 33.5 297 30-444 16-352 (366)
59 3sfz_A APAF-1, apoptotic pepti 100.0 1.9E-34 6.5E-39 309.3 35.6 359 30-445 655-1145(1249)
60 2oaj_A Protein SNI1; WD40 repe 100.0 1.1E-33 3.7E-38 290.7 39.1 160 29-248 55-242 (902)
61 4h5i_A Guanine nucleotide-exch 100.0 9.9E-34 3.4E-38 262.5 34.6 293 32-416 14-344 (365)
62 3v7d_B Cell division control p 100.0 1.1E-33 3.6E-38 271.8 35.8 303 29-438 118-444 (464)
63 3vl1_A 26S proteasome regulato 100.0 1.5E-33 5.1E-38 267.1 36.2 268 33-440 98-398 (420)
64 3vl1_A 26S proteasome regulato 100.0 7.8E-35 2.7E-39 275.9 26.3 279 33-444 57-351 (420)
65 4gga_A P55CDC, cell division c 100.0 1.5E-33 5E-38 267.0 33.8 262 30-433 145-412 (420)
66 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-33 4.1E-38 303.1 37.0 283 30-444 613-899 (1249)
67 4gga_A P55CDC, cell division c 100.0 4.8E-33 1.6E-37 263.5 35.9 275 34-453 107-388 (420)
68 3frx_A Guanine nucleotide-bind 100.0 2.6E-33 9E-38 255.0 32.5 240 91-445 7-255 (319)
69 3mmy_A MRNA export factor; mRN 100.0 3.5E-33 1.2E-37 259.4 33.9 285 29-445 36-333 (368)
70 2xzm_R RACK1; ribosome, transl 100.0 1.2E-32 4.2E-37 253.4 36.2 285 90-445 10-327 (343)
71 4a11_B DNA excision repair pro 100.0 9.4E-33 3.2E-37 260.3 36.0 300 29-444 40-351 (408)
72 3k26_A Polycomb protein EED; W 100.0 4.6E-34 1.6E-38 265.2 25.7 263 31-415 68-366 (366)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-32 7.5E-37 261.1 37.2 301 28-445 114-425 (445)
74 4ggc_A P55CDC, cell division c 100.0 4.5E-32 1.5E-36 246.8 35.8 276 34-454 27-309 (318)
75 1gxr_A ESG1, transducin-like e 100.0 4.2E-32 1.4E-36 249.0 35.3 240 30-414 95-336 (337)
76 2pm7_B Protein transport prote 100.0 1.2E-32 4.2E-37 248.0 31.1 239 95-444 3-271 (297)
77 1p22_A F-BOX/WD-repeat protein 100.0 1.6E-32 5.6E-37 261.1 32.6 292 30-436 131-433 (435)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-32 4.8E-37 258.8 31.8 282 34-444 36-330 (402)
79 3jro_A Fusion protein of prote 100.0 5E-33 1.7E-37 281.8 29.1 257 29-416 6-286 (753)
80 3i2n_A WD repeat-containing pr 100.0 2E-32 6.8E-37 253.4 30.2 256 29-416 62-354 (357)
81 3bg1_A Protein SEC13 homolog; 100.0 4.6E-33 1.6E-37 253.1 23.7 234 114-444 14-279 (316)
82 1pgu_A Actin interacting prote 100.0 6.1E-32 2.1E-36 268.7 33.2 299 30-415 201-614 (615)
83 2j04_B YDR362CP, TAU91; beta p 100.0 8.1E-33 2.8E-37 266.4 25.5 299 30-416 205-518 (524)
84 3mkq_A Coatomer beta'-subunit; 100.0 4.8E-31 1.6E-35 271.1 39.2 324 30-444 53-409 (814)
85 3ei3_B DNA damage-binding prot 100.0 1.1E-31 3.9E-36 251.0 30.9 253 30-415 116-382 (383)
86 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.6E-31 1.2E-35 252.9 34.7 240 114-439 103-366 (450)
87 2xyi_A Probable histone-bindin 100.0 7.6E-32 2.6E-36 255.9 29.7 266 28-416 124-411 (430)
88 4e54_B DNA damage-binding prot 100.0 1E-32 3.5E-37 262.4 22.6 261 29-417 161-432 (435)
89 3gre_A Serine/threonine-protei 100.0 1.6E-31 5.6E-36 254.5 29.1 276 29-412 108-437 (437)
90 4ggc_A P55CDC, cell division c 100.0 1.5E-30 5E-35 236.8 33.5 246 30-416 65-316 (318)
91 4aow_A Guanine nucleotide-bind 100.0 2.1E-30 7.1E-35 238.1 34.6 278 92-444 29-323 (340)
92 2j04_A TAU60, YPL007P, hypothe 100.0 5.7E-32 2E-36 254.2 24.2 257 32-446 15-286 (588)
93 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-31 5E-36 246.3 25.9 260 38-437 42-309 (343)
94 3v7d_B Cell division control p 100.0 1.8E-30 6.2E-35 249.2 34.4 291 30-412 160-460 (464)
95 1sq9_A Antiviral protein SKI8; 100.0 9.9E-31 3.4E-35 245.8 31.5 282 93-439 8-366 (397)
96 2aq5_A Coronin-1A; WD40 repeat 100.0 8.4E-31 2.9E-35 246.7 30.1 256 28-417 77-344 (402)
97 3zwl_B Eukaryotic translation 100.0 8E-30 2.7E-34 236.8 36.3 282 93-444 24-332 (369)
98 3odt_A Protein DOA1; ubiquitin 100.0 3.4E-30 1.2E-34 233.8 33.0 238 29-416 56-297 (313)
99 3dm0_A Maltose-binding peripla 100.0 4.2E-30 1.4E-34 258.9 35.0 285 93-453 374-686 (694)
100 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.8E-29 6.2E-34 240.9 37.0 276 30-416 157-443 (445)
101 1k8k_C P40, ARP2/3 complex 41 100.0 5E-30 1.7E-34 238.7 31.4 260 114-415 9-274 (372)
102 4h5i_A Guanine nucleotide-exch 100.0 2.9E-30 9.8E-35 239.2 29.5 290 114-454 15-337 (365)
103 3dwl_C Actin-related protein 2 100.0 4.9E-32 1.7E-36 252.9 17.2 235 114-445 12-269 (377)
104 3jrp_A Fusion protein of prote 100.0 4.2E-30 1.4E-34 239.7 30.3 242 93-444 3-273 (379)
105 4gq1_A NUP37; propeller, trans 100.0 1.8E-30 6.2E-35 243.3 27.4 256 124-445 98-377 (393)
106 3vu4_A KMHSV2; beta-propeller 100.0 7.8E-30 2.7E-34 235.6 30.9 300 29-416 16-337 (355)
107 3f3f_A Nucleoporin SEH1; struc 100.0 1.4E-29 4.9E-34 233.0 30.5 250 96-444 6-323 (351)
108 4a11_B DNA excision repair pro 100.0 4.3E-29 1.5E-33 235.2 33.2 259 30-417 97-367 (408)
109 2xyi_A Probable histone-bindin 100.0 2.2E-29 7.7E-34 238.9 31.3 254 108-444 123-396 (430)
110 4gq1_A NUP37; propeller, trans 100.0 2.7E-30 9.3E-35 242.1 22.6 265 32-414 89-388 (393)
111 2j04_A TAU60, YPL007P, hypothe 100.0 7.9E-30 2.7E-34 239.7 23.7 262 29-444 49-347 (588)
112 4aez_A CDC20, WD repeat-contai 100.0 8.6E-29 3E-33 232.8 30.6 265 115-445 95-367 (401)
113 1yfq_A Cell cycle arrest prote 100.0 5.6E-29 1.9E-33 228.8 27.8 258 28-412 52-321 (342)
114 2w18_A PALB2, fancn, partner a 100.0 6.4E-28 2.2E-32 213.2 30.5 275 34-413 41-355 (356)
115 3mmy_A MRNA export factor; mRN 100.0 1.4E-28 4.8E-33 228.3 27.1 260 29-416 83-347 (368)
116 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.9E-28 1.3E-32 231.9 30.2 259 30-416 100-392 (450)
117 3dw8_B Serine/threonine-protei 100.0 2.1E-28 7E-33 233.7 28.1 265 112-444 27-359 (447)
118 1l0q_A Surface layer protein; 100.0 5.3E-27 1.8E-31 219.9 36.7 288 44-439 2-301 (391)
119 3jro_A Fusion protein of prote 100.0 1.8E-28 6.3E-33 248.4 28.2 241 95-445 3-272 (753)
120 3bws_A Protein LP49; two-domai 100.0 4.1E-27 1.4E-31 223.7 32.2 270 31-444 121-417 (433)
121 3lrv_A PRE-mRNA-splicing facto 100.0 5.1E-27 1.7E-31 215.9 26.8 246 32-416 76-334 (343)
122 1p22_A F-BOX/WD-repeat protein 100.0 4.1E-26 1.4E-30 217.0 31.8 257 114-444 134-400 (435)
123 3vu4_A KMHSV2; beta-propeller 100.0 6.5E-26 2.2E-30 209.3 30.2 276 114-446 20-324 (355)
124 3bws_A Protein LP49; two-domai 100.0 7.3E-26 2.5E-30 215.1 31.3 239 30-415 167-432 (433)
125 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.6E-24 5.4E-29 204.1 32.4 244 44-439 143-409 (415)
126 2w18_A PALB2, fancn, partner a 99.9 5E-25 1.7E-29 194.8 25.4 278 116-454 42-351 (356)
127 1nir_A Nitrite reductase; hemo 99.9 2.6E-23 8.8E-28 201.8 36.4 303 34-426 180-524 (543)
128 1l0q_A Surface layer protein; 99.9 3.8E-23 1.3E-27 193.6 36.4 297 29-416 28-343 (391)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 5.1E-25 1.7E-29 207.5 21.7 182 215-444 175-370 (415)
130 1nir_A Nitrite reductase; hemo 99.9 1.9E-23 6.6E-28 202.7 30.3 267 39-445 144-438 (543)
131 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-23 4.7E-28 213.3 28.4 282 32-444 36-396 (741)
132 2ojh_A Uncharacterized protein 99.9 4.2E-23 1.4E-27 185.1 25.1 253 49-444 17-288 (297)
133 1ri6_A Putative isomerase YBHE 99.9 1.5E-21 5.3E-26 179.0 33.6 277 114-438 38-333 (343)
134 3vgz_A Uncharacterized protein 99.9 1.3E-21 4.5E-26 180.3 32.3 279 30-444 38-330 (353)
135 1k32_A Tricorn protease; prote 99.9 8.9E-22 3E-26 206.8 34.0 181 217-444 294-488 (1045)
136 3u4y_A Uncharacterized protein 99.9 2.5E-21 8.5E-26 176.9 31.9 276 32-441 40-328 (331)
137 1xfd_A DIP, dipeptidyl aminope 99.9 1.2E-22 4.3E-27 205.7 25.5 318 33-445 17-427 (723)
138 3hfq_A Uncharacterized protein 99.9 6.2E-21 2.1E-25 175.5 32.2 268 30-416 37-320 (347)
139 2ecf_A Dipeptidyl peptidase IV 99.9 5.3E-22 1.8E-26 201.6 26.9 288 34-448 110-445 (741)
140 3u4y_A Uncharacterized protein 99.9 1.6E-20 5.3E-25 171.6 32.7 264 38-444 3-289 (331)
141 2ojh_A Uncharacterized protein 99.9 5.2E-21 1.8E-25 171.4 26.9 234 28-406 37-293 (297)
142 2z3z_A Dipeptidyl aminopeptida 99.9 4.3E-21 1.5E-25 193.8 27.1 284 33-445 82-418 (706)
143 2oit_A Nucleoporin 214KDA; NH2 99.9 1.5E-19 5.3E-24 170.6 31.4 178 29-300 89-279 (434)
144 3o4h_A Acylamino-acid-releasin 99.9 1.1E-20 3.9E-25 186.3 24.4 256 31-444 20-298 (582)
145 2oit_A Nucleoporin 214KDA; NH2 99.9 1.8E-20 6.2E-25 177.0 24.7 229 32-357 36-278 (434)
146 2z3z_A Dipeptidyl aminopeptida 99.9 1.1E-20 3.9E-25 190.7 23.9 236 114-444 82-372 (706)
147 1pby_B Quinohemoprotein amine 99.9 1.3E-19 4.6E-24 165.6 28.8 250 45-426 2-320 (337)
148 3scy_A Hypothetical bacterial 99.9 6.1E-19 2.1E-23 163.1 33.1 289 31-436 48-360 (361)
149 1jmx_B Amine dehydrogenase; ox 99.9 5.7E-20 1.9E-24 169.0 25.4 261 37-425 4-334 (349)
150 1k32_A Tricorn protease; prote 99.9 6.9E-20 2.4E-24 192.5 28.7 277 29-413 200-500 (1045)
151 1ri6_A Putative isomerase YBHE 99.9 2E-18 6.8E-23 158.2 32.1 258 29-357 34-308 (343)
152 3hfq_A Uncharacterized protein 99.9 1.8E-18 6.3E-23 158.9 31.6 245 114-444 40-302 (347)
153 1z68_A Fibroblast activation p 99.8 6.5E-20 2.2E-24 185.6 21.5 282 36-443 19-371 (719)
154 3vgz_A Uncharacterized protein 99.8 2.6E-18 9E-23 158.2 29.7 242 31-406 87-335 (353)
155 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.3E-18 4.4E-23 161.1 27.3 258 33-416 40-342 (365)
156 1xfd_A DIP, dipeptidyl aminope 99.8 2.2E-19 7.4E-24 181.9 20.5 295 114-444 17-376 (723)
157 3pe7_A Oligogalacturonate lyas 99.8 2.2E-18 7.6E-23 161.0 25.6 264 38-444 41-367 (388)
158 4a5s_A Dipeptidyl peptidase 4 99.8 2.7E-18 9.2E-23 173.9 26.5 271 33-433 17-369 (740)
159 3scy_A Hypothetical bacterial 99.8 1.1E-16 3.6E-21 148.0 32.3 241 114-444 50-322 (361)
160 1z68_A Fibroblast activation p 99.8 3.6E-18 1.2E-22 172.7 23.8 281 34-444 61-426 (719)
161 1q7f_A NHL, brain tumor CG1071 99.8 3.1E-16 1.1E-20 139.8 31.0 260 13-416 12-281 (286)
162 3o4h_A Acylamino-acid-releasin 99.8 8.6E-18 3E-22 165.7 22.1 217 114-442 22-260 (582)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 1E-15 3.5E-20 141.5 30.4 245 114-444 40-326 (365)
164 3azo_A Aminopeptidase; POP fam 99.8 2.1E-16 7.3E-21 158.3 26.8 183 217-433 128-341 (662)
165 1pby_B Quinohemoprotein amine 99.7 4.3E-16 1.5E-20 142.2 25.1 229 128-444 2-296 (337)
166 2oiz_A Aromatic amine dehydrog 99.7 3.5E-15 1.2E-19 137.4 30.8 270 43-440 14-360 (361)
167 1jmx_B Amine dehydrogenase; ox 99.7 3.1E-16 1.1E-20 143.9 23.5 236 124-444 8-311 (349)
168 4a5s_A Dipeptidyl peptidase 4 99.7 1.7E-16 5.7E-21 160.8 22.7 241 115-443 18-334 (740)
169 3fvz_A Peptidyl-glycine alpha- 99.7 3E-15 1E-19 136.2 28.8 260 32-415 23-322 (329)
170 3c5m_A Oligogalacturonate lyas 99.7 7.2E-16 2.5E-20 144.1 24.4 298 31-416 34-385 (396)
171 2dg1_A DRP35, lactonase; beta 99.7 5.6E-15 1.9E-19 134.8 27.4 272 32-443 5-295 (333)
172 3pe7_A Oligogalacturonate lyas 99.7 7.1E-16 2.4E-20 143.9 21.6 253 32-414 80-381 (388)
173 3azo_A Aminopeptidase; POP fam 99.7 2.8E-15 9.5E-20 150.2 24.9 177 217-426 186-379 (662)
174 3e5z_A Putative gluconolactona 99.7 2.6E-14 8.7E-19 128.1 26.4 240 31-416 26-287 (296)
175 2xdw_A Prolyl endopeptidase; a 99.7 5.1E-14 1.7E-18 141.9 28.4 248 31-417 123-416 (710)
176 2bkl_A Prolyl endopeptidase; m 99.6 1.9E-14 6.4E-19 144.7 23.6 249 31-417 119-399 (695)
177 1qks_A Cytochrome CD1 nitrite 99.6 2E-12 6.9E-17 125.1 36.5 310 32-425 196-547 (567)
178 2dg1_A DRP35, lactonase; beta 99.6 5.7E-13 2E-17 121.4 30.7 245 31-406 43-301 (333)
179 3fvz_A Peptidyl-glycine alpha- 99.6 1.5E-13 5.1E-18 125.0 26.4 269 114-444 24-308 (329)
180 2gop_A Trilobed protease; beta 99.6 1.3E-13 4.6E-18 126.3 24.8 241 30-437 12-311 (347)
181 1q7f_A NHL, brain tumor CG1071 99.6 9.3E-13 3.2E-17 117.2 29.0 231 114-444 30-267 (286)
182 1rwi_B Serine/threonine-protei 99.6 3.1E-13 1E-17 119.2 25.3 237 34-416 25-265 (270)
183 1qks_A Cytochrome CD1 nitrite 99.6 2.5E-12 8.5E-17 124.5 32.8 268 42-444 165-456 (567)
184 2z2n_A Virginiamycin B lyase; 99.6 9E-12 3.1E-16 111.3 34.4 268 31-444 13-282 (299)
185 2xdw_A Prolyl endopeptidase; a 99.6 4.5E-13 1.6E-17 135.0 28.3 234 114-448 125-400 (710)
186 2gop_A Trilobed protease; beta 99.6 2.9E-13 9.8E-18 124.1 24.3 152 220-429 172-342 (347)
187 3no2_A Uncharacterized protein 99.6 2.1E-12 7.2E-17 113.8 27.3 246 43-424 4-260 (276)
188 3e5z_A Putative gluconolactona 99.6 2.9E-12 9.9E-17 114.6 27.0 222 114-444 28-273 (296)
189 2bkl_A Prolyl endopeptidase; m 99.5 1.5E-12 5.1E-17 130.8 24.8 230 114-448 121-383 (695)
190 2qc5_A Streptogramin B lactona 99.5 1.1E-10 3.7E-15 104.3 34.3 269 32-445 19-289 (300)
191 3dsm_A Uncharacterized protein 99.5 8.5E-12 2.9E-16 113.2 27.2 249 33-425 44-310 (328)
192 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 9.1E-12 3.1E-16 112.3 27.0 248 32-416 17-300 (314)
193 1yr2_A Prolyl oligopeptidase; 99.5 1.1E-12 3.9E-17 132.6 22.3 160 217-417 266-443 (741)
194 2oiz_A Aromatic amine dehydrog 99.5 5.4E-12 1.9E-16 116.0 24.8 269 37-397 54-360 (361)
195 3c5m_A Oligogalacturonate lyas 99.5 2.8E-13 9.6E-18 126.5 14.5 176 223-444 85-299 (396)
196 3no2_A Uncharacterized protein 99.5 2.7E-11 9.1E-16 106.7 24.8 220 125-446 3-231 (276)
197 3dsm_A Uncharacterized protein 99.5 3.4E-11 1.2E-15 109.2 25.7 225 115-444 45-284 (328)
198 3g4e_A Regucalcin; six bladed 99.5 1.1E-10 3.7E-15 104.3 28.0 233 34-404 14-261 (297)
199 1rwi_B Serine/threonine-protei 99.4 7E-11 2.4E-15 103.9 25.0 224 115-444 25-250 (270)
200 2mad_H Methylamine dehydrogena 99.4 7.6E-10 2.6E-14 101.8 32.6 255 39-422 27-356 (373)
201 1yr2_A Prolyl oligopeptidase; 99.4 3.8E-11 1.3E-15 121.5 25.7 232 114-448 163-427 (741)
202 2z2n_A Virginiamycin B lyase; 99.4 9.3E-10 3.2E-14 98.1 31.4 239 32-416 56-296 (299)
203 3dr2_A Exported gluconolactona 99.4 1.8E-10 6.2E-15 103.3 25.6 239 28-412 40-303 (305)
204 3iuj_A Prolyl endopeptidase; h 99.4 4.2E-11 1.5E-15 120.0 23.7 246 31-417 127-407 (693)
205 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 1.4E-10 4.6E-15 104.5 24.8 227 114-440 18-280 (314)
206 3hrp_A Uncharacterized protein 99.4 1.1E-09 3.8E-14 102.2 31.1 269 32-413 130-408 (409)
207 1xip_A Nucleoporin NUP159; bet 99.4 1.9E-11 6.4E-16 111.6 18.2 192 33-344 38-230 (388)
208 3sjl_D Methylamine dehydrogena 99.4 1.3E-09 4.3E-14 99.2 29.9 273 38-438 38-384 (386)
209 3g4e_A Regucalcin; six bladed 99.3 6.9E-10 2.4E-14 99.1 25.7 184 219-442 54-256 (297)
210 3c75_H MADH, methylamine dehyd 99.3 2.2E-09 7.7E-14 99.3 29.1 88 332-439 323-424 (426)
211 2qe8_A Uncharacterized protein 99.3 4.6E-10 1.6E-14 102.4 24.0 266 33-444 17-307 (343)
212 1xip_A Nucleoporin NUP159; bet 99.3 6.7E-11 2.3E-15 108.0 17.9 145 216-403 86-232 (388)
213 2qc5_A Streptogramin B lactona 99.3 9.1E-09 3.1E-13 91.7 31.0 237 32-414 61-299 (300)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 2.6E-09 8.7E-14 96.7 27.2 228 34-404 50-291 (326)
215 3hrp_A Uncharacterized protein 99.3 2E-09 6.8E-14 100.5 25.8 242 114-444 131-396 (409)
216 3sjl_D Methylamine dehydrogena 99.3 1.3E-09 4.3E-14 99.2 23.0 263 37-371 82-376 (386)
217 2ghs_A AGR_C_1268P; regucalcin 99.3 5.6E-09 1.9E-13 94.5 26.5 181 219-442 90-286 (326)
218 2ece_A 462AA long hypothetical 99.1 8.5E-08 2.9E-12 87.9 27.9 171 222-403 191-399 (462)
219 3iuj_A Prolyl endopeptidase; h 99.1 3.7E-09 1.3E-13 105.9 21.1 228 114-448 129-391 (693)
220 1mda_H Methylamine dehydrogena 99.1 2.1E-08 7.1E-13 91.3 22.1 86 333-437 269-366 (368)
221 2mad_H Methylamine dehydrogena 99.1 1.2E-07 4.2E-12 87.1 27.3 252 37-364 70-356 (373)
222 3dr2_A Exported gluconolactona 99.1 6.9E-08 2.3E-12 86.4 25.2 183 218-444 85-293 (305)
223 1npe_A Nidogen, entactin; glyc 99.1 9.5E-07 3.2E-11 77.2 30.6 176 220-440 80-263 (267)
224 1kb0_A Quinohemoprotein alcoho 99.0 1.4E-07 4.6E-12 93.9 25.6 202 222-443 246-535 (677)
225 2hz6_A Endoplasmic reticulum t 99.0 4.3E-10 1.5E-14 103.6 7.0 203 126-440 8-216 (369)
226 3c75_H MADH, methylamine dehyd 99.0 9.1E-08 3.1E-12 88.6 21.7 255 37-365 122-409 (426)
227 1yiq_A Quinohemoprotein alcoho 99.0 3.7E-07 1.3E-11 91.0 26.7 202 222-443 238-533 (689)
228 2qe8_A Uncharacterized protein 98.8 2.3E-07 7.9E-12 84.5 18.8 241 30-412 64-318 (343)
229 2hz6_A Endoplasmic reticulum t 98.8 5.9E-09 2E-13 96.0 5.3 188 43-366 8-200 (369)
230 1fwx_A Nitrous oxide reductase 98.7 3.4E-06 1.2E-10 80.2 23.5 148 239-416 254-432 (595)
231 2ece_A 462AA long hypothetical 98.7 3.2E-06 1.1E-10 77.5 22.2 199 221-444 140-397 (462)
232 1mda_H Methylamine dehydrogena 98.7 7E-07 2.4E-11 81.3 17.9 254 37-371 69-359 (368)
233 2fp8_A Strictosidine synthase; 98.7 1.4E-05 4.6E-10 72.0 25.5 157 220-416 127-314 (322)
234 1npe_A Nidogen, entactin; glyc 98.7 7.3E-05 2.5E-09 65.1 29.4 135 220-397 123-263 (267)
235 2p4o_A Hypothetical protein; p 98.7 4E-05 1.4E-09 68.3 28.2 238 33-406 32-279 (306)
236 3q7m_A Lipoprotein YFGL, BAMB; 98.7 5.8E-05 2E-09 69.4 29.8 151 230-425 188-346 (376)
237 1fwx_A Nitrous oxide reductase 98.6 2.9E-06 1E-10 80.6 19.9 181 237-445 173-405 (595)
238 2iwa_A Glutamine cyclotransfer 98.6 3.1E-05 1.1E-09 66.5 24.5 211 116-416 23-238 (266)
239 2iwa_A Glutamine cyclotransfer 98.6 2.2E-05 7.4E-10 67.5 23.4 215 30-357 16-237 (266)
240 3v65_B Low-density lipoprotein 98.6 0.00033 1.1E-08 64.5 31.3 176 221-439 161-342 (386)
241 3v64_C Agrin; beta propeller, 98.5 0.00049 1.7E-08 62.4 32.9 177 221-439 118-299 (349)
242 3hxj_A Pyrrolo-quinoline quino 98.5 8.8E-06 3E-10 73.3 19.3 176 220-446 138-313 (330)
243 1kb0_A Quinohemoprotein alcoho 98.5 4.5E-05 1.5E-09 75.8 25.0 92 290-414 457-566 (677)
244 3qqz_A Putative uncharacterize 98.5 0.00043 1.5E-08 59.1 28.0 220 114-414 27-252 (255)
245 2p4o_A Hypothetical protein; p 98.5 0.00032 1.1E-08 62.4 28.2 187 220-441 73-271 (306)
246 3nol_A Glutamine cyclotransfer 98.5 5E-05 1.7E-09 64.5 20.7 193 34-346 44-243 (262)
247 4a2l_A BT_4663, two-component 98.4 0.0014 4.8E-08 66.7 33.9 198 219-443 263-467 (795)
248 1kv9_A Type II quinohemoprotei 98.4 0.00014 4.9E-09 72.1 25.9 185 222-426 233-498 (668)
249 3nol_A Glutamine cyclotransfer 98.4 5.2E-05 1.8E-09 64.4 18.9 178 220-440 44-237 (262)
250 2xe4_A Oligopeptidase B; hydro 98.4 0.00015 5.1E-09 73.2 25.8 73 220-299 272-354 (751)
251 3hxj_A Pyrrolo-quinoline quino 98.4 5.8E-05 2E-09 67.8 20.5 219 126-416 107-325 (330)
252 3mbr_X Glutamine cyclotransfer 98.3 0.0004 1.4E-08 58.5 23.5 209 91-403 9-222 (243)
253 1yiq_A Quinohemoprotein alcoho 98.3 8.1E-05 2.8E-09 74.2 22.8 81 289-402 454-536 (689)
254 3q7m_A Lipoprotein YFGL, BAMB; 98.3 0.00022 7.6E-09 65.5 24.2 135 230-412 239-375 (376)
255 2ad6_A Methanol dehydrogenase 98.3 0.00028 9.5E-09 68.6 25.2 77 348-442 444-521 (571)
256 3qqz_A Putative uncharacterize 98.3 0.00094 3.2E-08 57.0 25.2 217 33-354 27-250 (255)
257 2fp8_A Strictosidine synthase; 98.3 0.00085 2.9E-08 60.1 26.0 182 220-444 81-299 (322)
258 4a2l_A BT_4663, two-component 98.3 0.0059 2E-07 62.1 37.2 286 32-446 356-649 (795)
259 3tc9_A Hypothetical hydrolase; 98.2 0.0013 4.6E-08 61.4 27.5 72 220-299 227-301 (430)
260 3nok_A Glutaminyl cyclase; bet 98.2 0.00012 4E-09 62.3 18.1 178 219-440 55-247 (268)
261 3nok_A Glutaminyl cyclase; bet 98.2 0.00044 1.5E-08 58.7 21.5 197 114-403 55-254 (268)
262 3mbr_X Glutamine cyclotransfer 98.2 0.00041 1.4E-08 58.4 21.1 180 218-440 20-216 (243)
263 1ijq_A LDL receptor, low-densi 98.2 0.0034 1.2E-07 55.9 33.4 164 220-424 78-246 (316)
264 1k3i_A Galactose oxidase precu 98.2 0.00037 1.3E-08 69.2 22.9 33 117-151 246-279 (656)
265 1flg_A Protein (quinoprotein e 98.2 0.0022 7.5E-08 62.4 27.8 79 348-444 466-545 (582)
266 4hw6_A Hypothetical protein, I 98.1 0.005 1.7E-07 57.5 27.9 182 220-414 229-432 (433)
267 3p5b_L Low density lipoprotein 98.0 0.0076 2.6E-07 55.6 32.5 178 220-438 160-343 (400)
268 1w6s_A Methanol dehydrogenase 98.0 0.0015 5.1E-08 63.5 23.7 46 395-441 483-529 (599)
269 3m0c_C LDL receptor, low-densi 98.0 0.015 5.3E-07 58.4 32.7 179 220-439 472-656 (791)
270 3sov_A LRP-6, low-density lipo 98.0 0.0073 2.5E-07 53.8 29.3 175 220-438 80-261 (318)
271 3v65_B Low-density lipoprotein 97.9 0.0069 2.3E-07 55.7 24.3 156 220-416 117-278 (386)
272 3v9f_A Two-component system se 97.9 0.03 1E-06 56.8 32.2 190 218-444 406-599 (781)
273 3v9f_A Two-component system se 97.9 0.03 1E-06 56.8 33.6 189 219-444 363-555 (781)
274 2xe4_A Oligopeptidase B; hydro 97.9 0.00078 2.7E-08 68.0 18.8 114 220-357 175-304 (751)
275 3ei3_A DNA damage-binding prot 97.8 0.044 1.5E-06 57.7 34.6 133 268-435 829-977 (1158)
276 3v64_C Agrin; beta propeller, 97.8 0.016 5.6E-07 52.3 26.4 156 220-416 74-235 (349)
277 4hw6_A Hypothetical protein, I 97.8 0.012 4.2E-07 54.8 24.2 172 219-416 182-374 (433)
278 1kv9_A Type II quinohemoprotei 97.7 0.0088 3E-07 59.3 23.8 84 272-365 234-340 (668)
279 3kya_A Putative phosphatase; s 97.6 0.017 5.9E-07 54.2 22.6 124 220-356 187-340 (496)
280 1n7d_A LDL receptor, low-densi 97.6 0.0012 4E-08 65.8 15.2 178 220-438 454-637 (699)
281 2xbg_A YCF48-like protein; pho 97.6 0.039 1.3E-06 49.3 30.6 158 218-413 162-320 (327)
282 2xbg_A YCF48-like protein; pho 97.5 0.043 1.5E-06 49.0 30.5 184 220-444 123-309 (327)
283 1k3i_A Galactose oxidase precu 97.5 0.016 5.6E-07 57.4 21.9 75 219-301 243-325 (656)
284 4a0p_A LRP6, LRP-6, low-densit 97.5 0.091 3.1E-06 51.5 34.2 162 220-426 81-247 (628)
285 3sov_A LRP-6, low-density lipo 97.5 0.033 1.1E-06 49.5 21.6 157 220-416 36-198 (318)
286 2p9w_A MAL S 1 allergenic prot 97.4 0.022 7.4E-07 50.2 19.3 179 219-416 13-216 (334)
287 1ijq_A LDL receptor, low-densi 97.4 0.056 1.9E-06 47.9 27.3 157 220-416 31-196 (316)
288 3amr_A 3-phytase; beta-propell 97.4 0.066 2.3E-06 47.6 22.4 160 238-424 98-272 (355)
289 2ad6_A Methanol dehydrogenase 97.3 0.043 1.5E-06 53.2 22.3 32 338-370 474-506 (571)
290 2p9w_A MAL S 1 allergenic prot 97.3 0.015 5.1E-07 51.2 16.7 76 220-299 138-215 (334)
291 3kya_A Putative phosphatase; s 97.3 0.11 3.9E-06 48.7 27.3 180 221-416 249-476 (496)
292 3s94_A LRP-6, low-density lipo 97.3 0.15 5.1E-06 49.9 27.9 157 220-418 85-246 (619)
293 1flg_A Protein (quinoprotein e 97.2 0.02 6.7E-07 55.7 18.5 57 237-303 464-520 (582)
294 3tc9_A Hypothetical hydrolase; 97.2 0.017 5.9E-07 53.8 17.2 136 268-440 137-282 (430)
295 3sre_A PON1, serum paraoxonase 97.1 0.075 2.6E-06 47.7 19.5 167 220-415 51-252 (355)
296 1w6s_A Methanol dehydrogenase 97.1 0.16 5.5E-06 49.4 23.3 32 338-370 483-515 (599)
297 3sre_A PON1, serum paraoxonase 97.0 0.16 5.6E-06 45.5 24.5 135 238-413 138-296 (355)
298 3p5b_L Low density lipoprotein 97.0 0.21 7.1E-06 45.9 29.8 122 220-366 203-328 (400)
299 3m0c_C LDL receptor, low-densi 97.0 0.36 1.2E-05 48.5 28.4 73 220-300 515-590 (791)
300 2xzh_A Clathrin heavy chain 1; 97.0 0.17 5.9E-06 44.3 27.2 166 219-416 152-333 (365)
301 1n7d_A LDL receptor, low-densi 97.0 0.0074 2.5E-07 60.1 12.8 72 221-300 498-572 (699)
302 3a9g_A Putative uncharacterize 96.9 0.22 7.4E-06 44.9 24.5 27 33-60 29-55 (354)
303 3pbp_A Nucleoporin NUP82; beta 96.9 0.18 6.3E-06 45.8 19.7 126 220-353 67-208 (452)
304 2ism_A Putative oxidoreductase 96.7 0.31 1.1E-05 43.9 26.7 28 32-60 30-57 (352)
305 3pbp_A Nucleoporin NUP82; beta 96.6 0.28 9.4E-06 44.7 18.9 165 226-410 28-207 (452)
306 3s25_A Hypothetical 7-bladed b 96.6 0.34 1.2E-05 42.5 19.1 134 225-414 110-254 (302)
307 1bpo_A Protein (clathrin); cla 96.5 0.47 1.6E-05 43.3 26.8 166 219-416 151-332 (494)
308 3amr_A 3-phytase; beta-propell 96.4 0.47 1.6E-05 42.1 25.1 130 220-369 129-275 (355)
309 3a9g_A Putative uncharacterize 96.2 0.63 2.2E-05 41.9 23.0 57 388-444 262-328 (354)
310 2ism_A Putative oxidoreductase 96.1 0.7 2.4E-05 41.5 24.7 56 388-444 271-331 (352)
311 1cru_A Protein (soluble quinop 95.8 0.73 2.5E-05 43.1 18.3 117 219-346 27-162 (454)
312 2vpj_A Kelch-like protein 12; 95.8 0.87 3E-05 39.6 21.8 146 229-416 112-279 (301)
313 2g8s_A Glucose/sorbosone dehyd 95.8 1 3.5E-05 40.4 28.8 28 33-61 18-46 (353)
314 1tl2_A L10, protein (tachylect 95.6 0.61 2.1E-05 38.3 14.5 115 220-352 42-158 (236)
315 1xi4_A Clathrin heavy chain; a 95.3 1.5 5E-05 46.7 19.3 157 194-370 125-301 (1630)
316 1tl2_A L10, protein (tachylect 95.3 0.15 5.3E-06 41.8 10.0 67 219-291 135-202 (236)
317 2g8s_A Glucose/sorbosone dehyd 95.2 0.95 3.2E-05 40.7 16.4 78 220-299 19-107 (353)
318 4a0p_A LRP6, LRP-6, low-densit 95.1 2.7 9.3E-05 41.1 38.4 163 219-416 340-509 (628)
319 1cru_A Protein (soluble quinop 95.0 2.3 8E-05 39.6 30.3 33 32-64 26-58 (454)
320 2xn4_A Kelch-like protein 2; s 94.2 2.5 8.5E-05 36.7 21.6 22 395-416 251-277 (302)
321 3s25_A Hypothetical 7-bladed b 93.7 3.1 0.00011 36.2 15.6 134 228-416 23-177 (302)
322 3ii7_A Kelch-like protein 7; p 93.5 3.5 0.00012 35.8 22.7 22 395-416 247-273 (306)
323 3s94_A LRP-6, low-density lipo 93.1 6.9 0.00024 38.1 33.8 155 220-416 393-552 (619)
324 2xzh_A Clathrin heavy chain 1; 92.7 4.9 0.00017 35.3 27.2 176 230-435 117-309 (365)
325 1zgk_A Kelch-like ECH-associat 92.2 5.4 0.00018 34.7 21.1 64 229-301 121-195 (308)
326 3ei3_A DNA damage-binding prot 92.1 14 0.00047 39.1 32.6 73 219-298 554-635 (1158)
327 3ii7_A Kelch-like protein 7; p 90.4 8.1 0.00028 33.4 18.8 23 278-301 200-227 (306)
328 3das_A Putative oxidoreductase 90.1 9.9 0.00034 33.8 26.2 55 389-444 267-324 (347)
329 1xi4_A Clathrin heavy chain; a 89.9 18 0.0006 38.9 17.8 175 230-433 116-306 (1630)
330 1bpo_A Protein (clathrin); cla 88.6 15 0.0005 33.8 30.4 177 230-436 116-309 (494)
331 2uvk_A YJHT; unknown function, 87.9 14 0.00048 32.8 22.3 28 392-419 313-346 (357)
332 3das_A Putative oxidoreductase 87.7 15 0.0005 32.7 28.6 34 32-65 31-64 (347)
333 4asc_A Kelch repeat and BTB do 87.6 13 0.00046 32.2 21.5 24 277-301 147-176 (315)
334 1zgk_A Kelch-like ECH-associat 86.4 15 0.00052 31.7 17.1 64 229-301 168-242 (308)
335 3sbq_A Nitrous-oxide reductase 86.3 23 0.0008 33.6 20.0 71 329-415 324-408 (638)
336 2vpj_A Kelch-like protein 12; 85.8 16 0.00055 31.3 20.7 64 229-301 159-233 (301)
337 2wg3_C Hedgehog-interacting pr 84.7 25 0.00086 32.7 19.3 59 220-278 15-79 (463)
338 3sbq_A Nitrous-oxide reductase 84.7 2.3 7.9E-05 40.2 7.2 78 221-300 325-409 (638)
339 2woz_A Kelch repeat and BTB do 83.5 22 0.00074 30.9 21.7 24 277-301 157-186 (318)
340 2zwa_A Leucine carboxyl methyl 82.7 39 0.0013 33.3 20.6 155 229-416 451-636 (695)
341 4gq2_M Nucleoporin NUP120; bet 80.2 36 0.0012 35.1 14.8 35 268-303 236-270 (950)
342 3ott_A Two-component system se 80.2 50 0.0017 32.9 29.9 114 219-357 472-586 (758)
343 2be1_A Serine/threonine-protei 76.4 40 0.0014 29.7 17.4 22 45-66 11-32 (339)
344 3q6k_A 43.2 kDa salivary prote 71.2 58 0.002 29.2 22.2 125 219-356 152-305 (381)
345 2xn4_A Kelch-like protein 2; s 68.2 56 0.0019 27.8 21.4 22 395-416 204-230 (302)
346 2be1_A Serine/threonine-protei 67.9 30 0.001 30.5 9.3 29 395-424 110-138 (339)
347 3ott_A Two-component system se 67.2 1E+02 0.0036 30.6 33.1 161 219-416 419-587 (758)
348 4gq2_M Nucleoporin NUP120; bet 67.1 1.2E+02 0.0041 31.3 15.4 39 220-259 237-276 (950)
349 3q6k_A 43.2 kDa salivary prote 65.7 76 0.0026 28.5 21.6 155 240-415 124-306 (381)
350 2zwa_A Leucine carboxyl methyl 60.6 1.3E+02 0.0046 29.5 21.7 69 229-301 500-579 (695)
351 3f7f_A Nucleoporin NUP120; nuc 59.7 36 0.0012 33.5 8.7 38 114-155 222-259 (729)
352 4asc_A Kelch repeat and BTB do 57.7 91 0.0031 26.7 20.7 22 395-416 196-222 (315)
353 2wg3_C Hedgehog-interacting pr 49.1 1.6E+02 0.0056 27.2 28.2 30 33-62 14-44 (463)
354 4fhn_B Nucleoporin NUP120; pro 46.1 19 0.00064 38.1 4.9 33 389-422 242-274 (1139)
355 4fhn_B Nucleoporin NUP120; pro 43.1 96 0.0033 32.7 9.6 39 220-259 239-278 (1139)
356 4a9v_A PHOX; hydrolase, beta-p 38.2 1.4E+02 0.0046 28.6 8.7 61 328-403 476-549 (592)
357 3f7f_A Nucleoporin NUP120; nuc 37.9 34 0.0012 33.6 4.8 31 394-425 229-259 (729)
358 3qhy_B Beta-lactamase inhibito 32.2 2.3E+02 0.0078 23.9 25.9 168 220-444 103-270 (282)
359 3zwu_A Alkaline phosphatase PH 29.4 2.1E+02 0.0072 27.5 8.7 57 222-286 479-548 (592)
360 3zwu_A Alkaline phosphatase PH 25.7 1.5E+02 0.0051 28.5 6.9 55 389-444 480-547 (592)
361 2uvk_A YJHT; unknown function, 25.0 3.3E+02 0.011 23.5 19.8 12 290-301 168-179 (357)
362 4a9v_A PHOX; hydrolase, beta-p 22.8 4.7E+02 0.016 25.0 9.5 59 220-286 477-548 (592)
No 1
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.4e-45 Score=350.11 Aligned_cols=397 Identities=46% Similarity=0.815 Sum_probs=294.3
Q ss_pred ccccchhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccC
Q 012721 8 ASASLEWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (457)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
......|++.|.|++ ....++|.+.|++++|+|+|++||+|+.||.|+||++.+++... ...
T Consensus 6 ~~~~~~w~~~q~~~~--~~~~~~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~----------------~~~ 67 (447)
T 3dw8_B 6 GGNDIQWCFSQVKGA--VDDDVAEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ----------------SHS 67 (447)
T ss_dssp --CCCCCEEEECCSC--SSSCCCGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC---------------------CCC
T ss_pred CCcceeEEEEEeccc--ccccccccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC----------------ccc
Confidence 445678999999988 45568899999999999999999999999999999998765310 011
Q ss_pred CCccceeeeeccCCccccccccccccCcEEEEEEEecCCC--CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeee
Q 012721 88 HPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNG--SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 88 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~--~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 165 (457)
..++++...+.+|.++|++++++.+++.|.+++| ++++ .+|++++.|++|++|++.++...... ....
T Consensus 68 ~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~--~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~-~~~~------- 137 (447)
T 3dw8_B 68 RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW--LPQKNAAQFLLSTNDKTIKLWKISERDKRPEG-YNLK------- 137 (447)
T ss_dssp CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEE--CCCCSSSEEEEEECSSCEEEEEEEEEEEEEEC-CSCC-------
T ss_pred ccceeEecccccccccccccccccccCceEEEEE--cCCCCcceEEEeCCCCeEEEEecccccCCcce-eccc-------
Confidence 1255678889999999999999999999999999 5665 79999999999999999876543210 0000
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEE
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWN 245 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd 245 (457)
..+|....... .....+ ..+...+......+.+.+..+|...|.+++|+|++++|++|.|+.|++||
T Consensus 138 --~~~g~~~~~~~------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd 204 (447)
T 3dw8_B 138 --EEDGRYRDPTT------VTTLRV-----PVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADDLRINLWH 204 (447)
T ss_dssp ----------CCC------CCSCCC-----CEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEECSSEEEEEE
T ss_pred --CccccccCccc------ccceEe-----ccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEeCCCeEEEEE
Confidence 00111100000 000000 00000000112233444447899999999999999999999999999999
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (457)
++..+....++..++..+.+|...|.+++|+|+++.+|++|+.||.|++||+++++........+.. +..+.....+.+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 283 (447)
T 3dw8_B 205 LEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEE-PEDPSNRSFFSE 283 (447)
T ss_dssp TTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECC-C-----CCHHHH
T ss_pred CCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEecc-CCCccccccccc
Confidence 9865667776666666788999999999999997689999999999999999988654333355555 223333445566
Q ss_pred cccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 326 IIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 326 h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
|...|.+++|+|+|++|++++++.|++||++..++++..+.+|......++..+..+++++++.++|+|++++|++|+.|
T Consensus 284 ~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~d 363 (447)
T 3dw8_B 284 IISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYN 363 (447)
T ss_dssp HTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECST
T ss_pred cCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccC
Confidence 77799999999999999998779999999986578889999998777666677777787777789999999999999999
Q ss_pred CcEEEEecCCCCceeeEEecC---------------------------------CCcceeeeeccCCcceeccccc
Q 012721 406 NLLRIFSHGVGSAGGITVEAG---------------------------------KNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 406 g~i~iw~~~~~~~~~~~~~~~---------------------------------~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
|.|++||+.+++ . ..+++| ...+..++|||++...+.+-++
T Consensus 364 g~v~iwd~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~ 437 (447)
T 3dw8_B 364 NFFRMFDRNTKR-D-ITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTN 437 (447)
T ss_dssp TEEEEEETTTCC-E-EEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSS
T ss_pred CEEEEEEcCCCc-c-eeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecc
Confidence 999999999883 2 344433 3567889999999988876544
No 2
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.9e-43 Score=316.67 Aligned_cols=271 Identities=18% Similarity=0.190 Sum_probs=232.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++||+|+.||+|+|||+.++. .+..+.+|.
T Consensus 10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~---------------------------~~~~~~~~~------- 55 (304)
T 2ynn_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQV---------------------------EVRSIQVTE------- 55 (304)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCc---------------------------eeEEeeccC-------
Confidence 3499999999999999999999999999999998765 456778888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.+|.+++| ++++++|++++.|++|++||+.+++....+
T Consensus 56 -----~~v~~~~~--~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~----------------------------------- 93 (304)
T 2ynn_A 56 -----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVDF----------------------------------- 93 (304)
T ss_dssp -----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CcEEEEEE--eCCCCEEEEECCCCEEEEEECCCCcEEEEE-----------------------------------
Confidence 88999999 678999999999999999999887654331
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+|...|.+++|+|++++|++| .|++|++||++........ +.+|.
T Consensus 94 --------------------------~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~-------~~~h~ 140 (304)
T 2ynn_A 94 --------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHE 140 (304)
T ss_dssp --------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEE-------ECCCC
T ss_pred --------------------------eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhh-------hcccC
Confidence 5799999999999999999999 9999999999844344433 67899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc--CCCeEEEE
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSR 345 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~ 345 (457)
..|.+++|+|.++.+|++|+.|++|++||+++.... ..+ ..+|...+..+.|+| ++.+|+++
T Consensus 141 ~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~------------~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 141 HFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL------------TTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCS----EEE------------ECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcc----cee------------ccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 999999999954389999999999999999875422 111 123456789999986 67899998
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+. +.|++||++. ++++..+.+|...+ ..++|+|++.+|++|+.||+|++||+.++ +....+.
T Consensus 205 s~D~~i~iWd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~-~~~~~~~ 267 (304)
T 2ynn_A 205 SDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTLN 267 (304)
T ss_dssp ETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-CEEEEEC
T ss_pred cCCCeEEEEeCCC-CccceeeCCCCCCE---------------EEEEECCCCCEEEEEcCCCeEEEEECCCC-ceeeecc
Confidence 75 9999999986 78899999998765 68999999999999999999999999998 7888999
Q ss_pred cCCCcceeeeeccCCcc
Q 012721 425 AGKNENRKPILQAAPRA 441 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~ 441 (457)
.|...+.+++++|++..
T Consensus 268 ~~~~~~~~~~~~~~~~~ 284 (304)
T 2ynn_A 268 VGLERSWCIATHPTGRK 284 (304)
T ss_dssp CSSSSEEEEEECTTCGG
T ss_pred CCCccEEEEEECCCCCc
Confidence 99999999999999864
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-42 Score=317.06 Aligned_cols=273 Identities=15% Similarity=0.211 Sum_probs=234.2
Q ss_pred cccCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 29 LQDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
..|.+.|++++|+|+ +.+||+|+.|++|+||++...+. .....+.+|.
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-------------------------~~~~~l~gh~--- 80 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-------------------------DLQWSLEGHQ--- 80 (321)
T ss_dssp TSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS---
T ss_pred ccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-------------------------eeeeeeccCC---
Confidence 359999999999985 67999999999999999986543 1445688998
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|.+++| ++++.++++++.|++|++||+.+++....+
T Consensus 81 ---------~~v~~~~~--~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~------------------------------- 118 (321)
T 3ow8_A 81 ---------LGVVSVDI--SHTLPIAASSSLDAHIRLWDLENGKQIKSI------------------------------- 118 (321)
T ss_dssp ---------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------------------
T ss_pred ---------CCEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCCEEEEE-------------------------------
Confidence 88999999 788999999999999999999988654432
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..|...+.+++|+|++++|+++ .|+.|++||++ .+..... +
T Consensus 119 ------------------------------~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~-~~~~~~~-------~ 160 (321)
T 3ow8_A 119 ------------------------------DAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVE-SGKKEYS-------L 160 (321)
T ss_dssp ------------------------------ECCTTCCCCEEECTTSSEEEEECTTSEEEEEETT-TCSEEEE-------E
T ss_pred ------------------------------eCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcC-CCceeEE-------e
Confidence 3566678899999999999999 99999999998 4444433 4
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
..|...+.+++|+|++ ++|++|+.||.|++||+++++.. .. +.+|...|.+++|+|++++|+
T Consensus 161 ~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~----~~-------------~~~h~~~v~~l~~spd~~~l~ 222 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLL----HT-------------LEGHAMPIRSLTFSPDSQLLV 222 (321)
T ss_dssp ECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EE-------------ECCCSSCCCEEEECTTSCEEE
T ss_pred cCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EE-------------EcccCCceeEEEEcCCCCEEE
Confidence 6678889999999999 99999999999999999987543 22 345678899999999999999
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 422 (457)
+++. +.|++||++. .+....+.+|...+ .+++|+|++.+|++++.|++|++||+.++ +....
T Consensus 223 s~s~dg~i~iwd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~ 285 (321)
T 3ow8_A 223 TASDDGYIKIYDVQH-ANLAGTLSGHASWV---------------LNVAFCPDDTHFVSSSSDKSVKVWDVGTR-TCVHT 285 (321)
T ss_dssp EECTTSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSCEEEEETTTT-EEEEE
T ss_pred EEcCCCeEEEEECCC-cceeEEEcCCCCce---------------EEEEECCCCCEEEEEeCCCcEEEEeCCCC-EEEEE
Confidence 9875 9999999985 77888888888765 68999999999999999999999999998 77888
Q ss_pred EecCCCcceeeeeccCCcceec
Q 012721 423 VEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 423 ~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.+|..+|.+++|+|++....+
T Consensus 286 ~~~h~~~v~~v~~s~~g~~l~s 307 (321)
T 3ow8_A 286 FFDHQDQVWGVKYNGNGSKIVS 307 (321)
T ss_dssp ECCCSSCEEEEEECTTSSEEEE
T ss_pred EcCCCCcEEEEEECCCCCEEEE
Confidence 9999999999999999987766
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=5.8e-43 Score=330.12 Aligned_cols=277 Identities=17% Similarity=0.258 Sum_probs=241.4
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.++|++++|+|++++||+|+.||+|+|||+.+++ ....+.+|.
T Consensus 105 ~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~---------------------------~~~~l~~h~------- 150 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGD---------------------------FERTLKGHT------- 150 (410)
T ss_dssp ECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCC---------------------------CCEEECCCS-------
T ss_pred cccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEeccC-------
Confidence 4599999999999999999999999999999998776 346788998
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|.+++| ++++++|++|+.|++|++||+.+++....
T Consensus 151 -----~~V~~v~~--~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------------------------------------ 187 (410)
T 1vyh_C 151 -----DSVQDISF--DHSGKLLASCSADMTIKLWDFQGFECIRT------------------------------------ 187 (410)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCCCEEETTSSCEEEC------------------------------------
T ss_pred -----CcEEEEEE--cCCCCEEEEEeCCCeEEEEeCCCCceeEE------------------------------------
Confidence 88999999 78999999999999999999987654322
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
+ .+|...|.+++|+|++++|++| .|+.|++||++ .+.+... +.+|.
T Consensus 188 ------------------------~-~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~-~~~~~~~-------~~~h~ 234 (410)
T 1vyh_C 188 ------------------------M-HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ-TGYCVKT-------FTGHR 234 (410)
T ss_dssp ------------------------C-CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCS
T ss_pred ------------------------E-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EeCCC
Confidence 1 6899999999999999999999 99999999998 5666554 57899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC---------
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--------- 338 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--------- 338 (457)
..|.++.++|++ .+|++|+.|++|++||+++++.. .. +.+|...|.+++|+|+
T Consensus 235 ~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~----~~-------------~~~h~~~v~~~~~~~~~~~~~~~~~ 296 (410)
T 1vyh_C 235 EWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECK----AE-------------LREHRHVVECISWAPESSYSSISEA 296 (410)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred ccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcee----eE-------------ecCCCceEEEEEEcCcccccchhhh
Confidence 999999999999 99999999999999999886532 11 3456788999999996
Q ss_pred -----------CCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 339 -----------GQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 339 -----------g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
|.+|++|+. +.|++||+++ +.++..+.+|...+ .+++|+|++++|++|+.|+
T Consensus 297 ~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~~~~g~~l~s~s~D~ 360 (410)
T 1vyh_C 297 TGSETKKSGKPGPFLLSGSRDKTIKMWDVST-GMCLMTLVGHDNWV---------------RGVLFHSGGKFILSCADDK 360 (410)
T ss_dssp CSCC-------CCEEEEEETTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSCEEEEETTT
T ss_pred ccccccccCCCCCEEEEEeCCCeEEEEECCC-CceEEEEECCCCcE---------------EEEEEcCCCCEEEEEeCCC
Confidence 668998875 9999999986 78888999998765 6899999999999999999
Q ss_pred cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccccccc
Q 012721 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSNLTRG 452 (457)
Q Consensus 407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~ 452 (457)
.|++||+.++ +....+.+|...|.+++|+|+++..++ ++.+..
T Consensus 361 ~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~s--gs~D~~ 403 (410)
T 1vyh_C 361 TLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVT--GSVDQT 403 (410)
T ss_dssp EEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEE--EETTSE
T ss_pred eEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEE--EeCCCc
Confidence 9999999988 678889999999999999999988877 444433
No 5
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=4.8e-41 Score=309.13 Aligned_cols=276 Identities=14% Similarity=0.186 Sum_probs=229.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++|++|+.||+|+|||..+++ .+..+..|.
T Consensus 52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~---------------------------~~~~~~~~~------- 97 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN---------------------------KVHAIPLRS------- 97 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCC---------------------------EEEEEECSS-------
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------cceEeecCC-------
Confidence 3599999999999999999999999999999988765 345677787
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| +|++++|++++.|+.|++|++.++.....
T Consensus 98 -----~~v~~~~~--s~~~~~l~s~~~d~~v~iw~~~~~~~~~~------------------------------------ 134 (340)
T 1got_B 98 -----SWVMTCAY--APSGNYVACGGLDNICSIYNLKTREGNVR------------------------------------ 134 (340)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTCEEEEEETTTCSBSCE------------------------------------
T ss_pred -----ccEEEEEE--CCCCCEEEEEeCCCeEEEEECccCCCcce------------------------------------
Confidence 78999999 78999999999999999999876532100
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
....+ .+|...|.++.|++++. ++++ .|+.|++||++ .++.... +.+|.
T Consensus 135 --------------------~~~~~-~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~-~~~~~~~-------~~~h~ 184 (340)
T 1got_B 135 --------------------VSREL-AGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIE-TGQQTTT-------FTGHT 184 (340)
T ss_dssp --------------------EEEEE-ECCSSCEEEEEEEETTE-EEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred --------------------eEEEe-cCCCccEEEEEECCCCc-EEEEECCCcEEEEECC-CCcEEEE-------EcCCC
Confidence 01111 68999999999998876 6666 99999999998 5555544 57899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..|.+++|+|++ .+|++|+.||.|++||+++++.. .. +.+|...|.+++|+|++++|++++.
T Consensus 185 ~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~----~~-------------~~~h~~~v~~v~~~p~~~~l~s~s~ 246 (340)
T 1got_B 185 GDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCR----QT-------------FTGHESDINAICFFPNGNAFATGSD 246 (340)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEE----EE-------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeE----EE-------------EcCCcCCEEEEEEcCCCCEEEEEcC
Confidence 999999999999 99999999999999999886432 22 3457789999999999999999875
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
+.|++||++. ++.+..+..+... ..+++++|+|++++|++|+.|+.|++||+.++ .....+.+|
T Consensus 247 d~~v~iwd~~~-~~~~~~~~~~~~~-------------~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~~~h 311 (340)
T 1got_B 247 DATCRLFDLRA-DQELMTYSHDNII-------------CGITSVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGH 311 (340)
T ss_dssp TSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTC-CEEEEEECC
T ss_pred CCcEEEEECCC-CcEEEEEccCCcc-------------cceEEEEECCCCCEEEEECCCCeEEEEEcccC-cEeeEeecC
Confidence 9999999985 5555555422211 12368999999999999999999999999988 678889999
Q ss_pred CCcceeeeeccCCcceec
Q 012721 427 KNENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~ 444 (457)
..+|.+++|+|++...++
T Consensus 312 ~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 312 DNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp SSCEEEEEECTTSSCEEE
T ss_pred CCcEEEEEEcCCCCEEEE
Confidence 999999999999988777
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1e-41 Score=315.37 Aligned_cols=280 Identities=14% Similarity=0.182 Sum_probs=216.7
Q ss_pred cccCCceEEEEECCCCCEEEEEeC------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDR------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (457)
..|.+.|++++|||||++||+|+. |+.|++|+..++.. .........+|.
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------------~~~~~~~~~~~~- 94 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------------NESLCTAGVQTE- 94 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC--------------------------CGGGCSEEEECS-
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCc-----------------------ceeEecccCCCC-
Confidence 459999999999999999999997 67899998776553 122333445566
Q ss_pred cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
..|.+++| ++++ .+++++.||+|++||+.+++.......
T Consensus 95 -----------~~V~~~~~--s~d~-~~l~~s~dg~v~lWd~~~~~~~~~~~~--------------------------- 133 (357)
T 4g56_B 95 -----------AGVTDVAW--VSEK-GILVASDSGAVELWEILEKESLLVNKF--------------------------- 133 (357)
T ss_dssp -----------SCEEEEEE--ETTT-EEEEEETTSCEEEC--------CCCCE---------------------------
T ss_pred -----------CCEEEEEE--cCCC-CEEEEECCCEEEEeeccccceeEEEee---------------------------
Confidence 78999999 5676 567788999999999988754322110
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
...+|...|++++|+|++++|++| .|+.|++||++ .++....
T Consensus 134 ------------------------------~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~-~~~~~~~------ 176 (357)
T 4g56_B 134 ------------------------------AKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLS-QKAVLKS------ 176 (357)
T ss_dssp ------------------------------EECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TTEEEEE------
T ss_pred ------------------------------ccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE------
Confidence 015799999999999999999999 99999999998 5555544
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-C
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-Q 340 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~ 340 (457)
+.+|...|.+++|+|++..++++++.||.|++||+++++.. ..+. +..|...+.+++|+|++ .
T Consensus 177 -~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~----~~~~-----------~~~~~~~v~~v~~sp~~~~ 240 (357)
T 4g56_B 177 -YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA----TRID-----------FCASDTIPTSVTWHPEKDD 240 (357)
T ss_dssp -ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB----CBCC-----------CTTCCSCEEEEEECTTSTT
T ss_pred -EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee----eeee-----------eccccccccchhhhhcccc
Confidence 57899999999999998568999999999999999987533 1111 12345679999999985 6
Q ss_pred eEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCc
Q 012721 341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
+|++|+. +.|++||++. ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||++++ +
T Consensus 241 ~la~g~~d~~i~~wd~~~-~~~~~~~~~~~~~v---------------~~l~~sp~~~~~lasgs~D~~i~iwd~~~~-~ 303 (357)
T 4g56_B 241 TFACGDETGNVSLVNIKN-PDSAQTSAVHSQNI---------------TGLAYSYHSSPFLASISEDCTVAVLDADFS-E 303 (357)
T ss_dssp EEEEEESSSCEEEEESSC-GGGCEEECCCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTSC-E
T ss_pred eEEEeecccceeEEECCC-CcEeEEEeccceeE---------------EEEEEcCCCCCEEEEEeCCCEEEEEECCCC-c
Confidence 7778765 9999999986 78888888888765 689999987 68999999999999999988 4
Q ss_pred eeeEEecCCCcceeeeecc-CCcceec
Q 012721 419 GGITVEAGKNENRKPILQA-APRARRS 444 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~p-~~~~~~~ 444 (457)
.. ...+|.++|++++|+| ++...++
T Consensus 304 ~~-~~~~H~~~V~~vafsP~d~~~l~s 329 (357)
T 4g56_B 304 VF-RDLSHRDFVTGVAWSPLDHSKFTT 329 (357)
T ss_dssp EE-EECCCSSCEEEEEECSSSTTEEEE
T ss_pred Ee-EECCCCCCEEEEEEeCCCCCEEEE
Confidence 43 4568999999999999 5655554
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.6e-41 Score=332.31 Aligned_cols=338 Identities=18% Similarity=0.210 Sum_probs=248.5
Q ss_pred ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...|.+.|++++|+|++. +|++|+.|++|++||..+.+ +...+.+|.
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~---------------------------~~~~l~~H~----- 190 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK---------------------------FKSTFGEHT----- 190 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE---------------------------EEEEECCCS-----
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe---------------------------Eeeeecccc-----
Confidence 456999999999999987 69999999999999976443 556788998
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEee------cCCCceeeeeeccccccccccCCCC
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM------DHFPFVSSENTLLAEKNFMNEHNPP 180 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (457)
+.|.+++| +|++++|++++.|++|++||+.+++....+.. .....|.+++|++....++......
T Consensus 191 -------~~V~~v~f--spdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~ 261 (611)
T 1nr0_A 191 -------KFVHSVRY--NPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADK 261 (611)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTS
T ss_pred -------CceEEEEE--CCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCC
Confidence 88999999 78999999999999999999998877655432 3455688888887544343333211
Q ss_pred Cceec-------------------------cCCc----cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC
Q 012721 181 SFAHG-------------------------YHLE----WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE 231 (457)
Q Consensus 181 ~~~~~-------------------------~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 231 (457)
...+. .++. ...++.+++|+.+.. ++.+.+ .+|...|.+++|+|+++
T Consensus 262 ~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~---~~~~~~-~gh~~~v~~l~~spdg~ 337 (611)
T 1nr0_A 262 TIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG---SIDQVR-YGHNKAITALSSSADGK 337 (611)
T ss_dssp EEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT---EEEEEE-CCCSSCEEEEEECTTSS
T ss_pred eEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC---CcceEE-cCCCCCEEEEEEeCCCC
Confidence 11100 0000 012234555554322 233333 78999999999999999
Q ss_pred EEEEe-CCCeEEEEEcCCCcceeee-------------------------------eecCCCc-----------------
Q 012721 232 TFVSA-DDLRINLWNLEISDQCFNI-------------------------------VDMKPSN----------------- 262 (457)
Q Consensus 232 ~l~~~-~d~~i~iwd~~~~~~~~~~-------------------------------~~~~~~~----------------- 262 (457)
+|+++ .|+.|++||+.. +..... ++.....
T Consensus 338 ~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~ 416 (611)
T 1nr0_A 338 TLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLG 416 (611)
T ss_dssp EEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEE
T ss_pred EEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcE
Confidence 99999 999999999873 322211 1100000
Q ss_pred ---------------------------ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc
Q 012721 263 ---------------------------MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE 315 (457)
Q Consensus 263 ---------------------------~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 315 (457)
...|...+.+++|+|+| ++|++|+.|++|++||+.++.... ..
T Consensus 417 ~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~-----~~---- 486 (611)
T 1nr0_A 417 LAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSE-----VK---- 486 (611)
T ss_dssp EEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEE-----EE----
T ss_pred EEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceee-----ee----
Confidence 00134567899999999 999999999999999998753210 00
Q ss_pred ccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeE--eeeccccccccccccCCCCccccceEEE
Q 012721 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVAT--FKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
..+|...|++++|+|+|++|++++. ++|++||+...++++.. +..|...+ .+++|
T Consensus 487 -------~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V---------------~~v~f 544 (611)
T 1nr0_A 487 -------TIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKV---------------ACVSW 544 (611)
T ss_dssp -------EEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCE---------------EEEEE
T ss_pred -------ccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccce---------------eEEEE
Confidence 1356789999999999999999875 99999999753444332 23366654 79999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCCcee-eEEecC-CCcceeeeeccCCcceec
Q 012721 393 SGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVEAG-KNENRKPILQAAPRARRS 444 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~~~-~~~v~~~~~~p~~~~~~~ 444 (457)
+||+++|++|+.|++|++|++.+++... ..+.+| ...|.+++|+|++. .++
T Consensus 545 spdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s 597 (611)
T 1nr0_A 545 SPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVS 597 (611)
T ss_dssp CTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEE
T ss_pred CCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEE
Confidence 9999999999999999999999875444 677899 89999999999998 444
No 8
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=5.9e-41 Score=307.86 Aligned_cols=285 Identities=12% Similarity=0.104 Sum_probs=219.8
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|.+++|+|||++|++++ |+++++||....... ....++... ....
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~---------------------------~~~~~~~~~-~~~~ 77 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFK---------------------------DPCAAPNEG-FCSA 77 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEES---------------------------SGGGTTCGG-GCSE
T ss_pred ccccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeec---------------------------cccccCCcc-eeee
Confidence 45778899999999999999887 678888874321100 000000000 0011
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
...++..|.+++| ++++ .|++++.||+|++||+.+++........
T Consensus 78 ~~~~~~~v~~~~~--s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~-------------------------------- 122 (344)
T 4gqb_B 78 GVQTEAGVADLTW--VGER-GILVASDSGAVELWELDENETLIVSKFC-------------------------------- 122 (344)
T ss_dssp EEEESSCEEEEEE--ETTT-EEEEEETTSEEEEEEECTTSSCEEEEEE--------------------------------
T ss_pred eeccCCCEEEEEE--eCCC-eEEEEECCCEEEEEeccCCCceeEeecc--------------------------------
Confidence 2223378999999 5664 7899999999999999988654432211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..+|...|++++|+|++++|++| .|+.|++||++ .++.+.. +.+|.
T Consensus 123 -------------------------~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~-~~~~~~~-------~~~h~ 169 (344)
T 4gqb_B 123 -------------------------KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA-QQVVLSS-------YRAHA 169 (344)
T ss_dssp -------------------------EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred -------------------------ccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------EcCcC
Confidence 15899999999999999999999 99999999999 5666654 68899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~ 346 (457)
..|.+++|+|++..+|++++.|++|++||+++++.. ..+.. ..|...+.+++|+|+ +++|++|+
T Consensus 170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~~p~~~~~l~sg~ 234 (344)
T 4gqb_B 170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIGC-----------SAPGYLPTSLAWHPQQSEVFVFGD 234 (344)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCE----EECC---------------CCCEEEEEECSSCTTEEEEEE
T ss_pred CceEEEEecCCCCCceeeecccccccccccccccee----eeeec-----------ceeeccceeeeecCCCCcceEEec
Confidence 999999999998668999999999999999987643 22221 223457899999995 56788887
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
. +.|++||+++ ++++..+.+|...+ ++++|+|++ ++|++|+.|++|+|||+.++ ....+.
T Consensus 235 ~dg~v~~wd~~~-~~~~~~~~~h~~~v---------------~~v~fsp~g~~~lasgs~D~~i~vwd~~~~--~~~~~~ 296 (344)
T 4gqb_B 235 ENGTVSLVDTKS-TSCVLSSAVHSQCV---------------TGLVFSPHSVPFLASLSEDCSLAVLDSSLS--ELFRSQ 296 (344)
T ss_dssp TTSEEEEEESCC---CCEEEECCSSCE---------------EEEEECSSSSCCEEEEETTSCEEEECTTCC--EEEEEC
T ss_pred cCCcEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEccCCCeEEEEEeCCCeEEEEECCCC--cEEEEc
Confidence 5 9999999986 88899999998865 699999998 58999999999999999988 356689
Q ss_pred cCCCcceeeeeccCCccee
Q 012721 425 AGKNENRKPILQAAPRARR 443 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~ 443 (457)
+|.+.|++++|+|+++...
T Consensus 297 ~H~~~V~~v~~sp~~~~ll 315 (344)
T 4gqb_B 297 AHRDFVRDATWSPLNHSLL 315 (344)
T ss_dssp CCSSCEEEEEECSSSTTEE
T ss_pred CCCCCEEEEEEeCCCCeEE
Confidence 9999999999999997654
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2e-40 Score=328.85 Aligned_cols=352 Identities=13% Similarity=0.150 Sum_probs=252.8
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|.+.|++++|+|+|++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~-------------------------~~~~~~~~~------ 103 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI-------------------------LKTTIPVFS------ 103 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC-------------------------EEEEEECSS------
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcce-------------------------eeEeecccC------
Confidence 3469999999999999999999999999999998755431 445678888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCC----CeEEEEEecccceeEEEeecCCCceeeeeecccccc-ccccCCCCCc
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN-FMNEHNPPSF 182 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 182 (457)
++|.+++| +|++++|++++.+ +.|++||. +.....+. .....|.+++|++.... ++...
T Consensus 104 ------~~v~~v~f--s~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~-gh~~~v~~v~f~p~~~~~l~s~s----- 167 (611)
T 1nr0_A 104 ------GPVKDISW--DSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLT-GQARAMNSVDFKPSRPFRIISGS----- 167 (611)
T ss_dssp ------SCEEEEEE--CTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCC-CCSSCEEEEEECSSSSCEEEEEE-----
T ss_pred ------CceEEEEE--CCCCCEEEEEECCCCceeEEEEeeC--CCCcceec-CCCCCceEEEECCCCCeEEEEEe-----
Confidence 88999999 7899999998865 47888874 33322222 23345788888765443 22222
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
.++.+++||... .++...+ .+|...|.+++|+|++++|+++ .|++|++||+. .++....+.....
T Consensus 168 ---------~D~~v~lwd~~~---~~~~~~l-~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~-~g~~~~~~~~~~~ 233 (611)
T 1nr0_A 168 ---------DDNTVAIFEGPP---FKFKSTF-GEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV-DGTKTGVFEDDSL 233 (611)
T ss_dssp ---------TTSCEEEEETTT---BEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEECBCTTS
T ss_pred ---------CCCeEEEEECCC---CeEeeee-ccccCceEEEEECCCCCEEEEEECCCcEEEEECC-CCcEeeeeccccc
Confidence 256899999753 3455555 8999999999999999999999 99999999998 5555554311111
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc----------------------------cccccc
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA----------------------------RILRDA 313 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~----------------------------~~~~~~ 313 (457)
...+|...|.+++|+|++ .+|++++.|++|++||+++++...... +++..
T Consensus 234 ~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~- 311 (611)
T 1nr0_A 234 KNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP- 311 (611)
T ss_dssp SSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET-
T ss_pred cccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeC-
Confidence 123799999999999999 999999999999999999876431100 00000
Q ss_pred ccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEe-eeccccccccc---------------
Q 012721 314 AESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLC--------------- 376 (457)
Q Consensus 314 ~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~--------------- 376 (457)
........+.+|...|++++|+|+|++|++++. +.|++||+.+ ++....+ .+|...+..+.
T Consensus 312 -~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~-~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~ 389 (611)
T 1nr0_A 312 -ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST-GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDH 389 (611)
T ss_dssp -TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTE
T ss_pred -CCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC-CceeeecccCCcceEEEEEECCCCcEEEEEcCCc
Confidence 000112345689999999999999999999875 9999999975 3332221 11211110000
Q ss_pred ----c-----------------------ccCCC------------------------CccccceEEEcCCCcEEEEEeCC
Q 012721 377 ----D-----------------------LYNND------------------------SIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 377 ----~-----------------------~~~~~------------------------~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
+ .+.++ .-..+.+++|+|||++|++|+.|
T Consensus 390 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D 469 (611)
T 1nr0_A 390 LKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD 469 (611)
T ss_dssp EEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT
T ss_pred eEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCC
Confidence 0 00000 01234689999999999999999
Q ss_pred CcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 406 NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 406 g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
++|++||+.++........+|...|.+++|+|++...++
T Consensus 470 ~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las 508 (611)
T 1nr0_A 470 SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVA 508 (611)
T ss_dssp SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEE
Confidence 999999998763222233789999999999999988776
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5e-40 Score=303.77 Aligned_cols=279 Identities=15% Similarity=0.184 Sum_probs=230.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++||+|+.||+|+|||..+++ ....+..|.
T Consensus 61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~---------------------------~~~~~~~~~------- 106 (354)
T 2pbi_B 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN---------------------------KEHAVTMPC------- 106 (354)
T ss_dssp ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECSS-------
T ss_pred cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------cceEEecCC-------
Confidence 3599999999999999999999999999999987665 334566676
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| +|++.+|++++.|+.+++|++.......
T Consensus 107 -----~~v~~~~~--sp~g~~lasg~~d~~i~v~~~~~~~~~~------------------------------------- 142 (354)
T 2pbi_B 107 -----TWVMACAY--APSGCAIACGGLDNKCSVYPLTFDKNEN------------------------------------- 142 (354)
T ss_dssp -----SCCCEEEE--CTTSSEEEEESTTSEEEEEECCCCTTCC-------------------------------------
T ss_pred -----CCEEEEEE--CCCCCEEEEeeCCCCEEEEEEecccccc-------------------------------------
Confidence 77999999 7899999999999999999986532110
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.......+ .+|...|.+++|+|++..|+++ .|++|++||++ .++.... +.+|.
T Consensus 143 -----------------~~~~~~~~-~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~-~~~~~~~-------~~~h~ 196 (354)
T 2pbi_B 143 -----------------MAAKKKSV-AMHTNYLSACSFTNSDMQILTASGDGTCALWDVE-SGQLLQS-------FHGHG 196 (354)
T ss_dssp -----------------SGGGCEEE-EECSSCEEEEEECSSSSEEEEEETTSEEEEEETT-TCCEEEE-------EECCS
T ss_pred -----------------ccccceee-eccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCC-CCeEEEE-------EcCCC
Confidence 00111112 5799999999999999999999 99999999998 5655554 57899
Q ss_pred CceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 268 EVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 268 ~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
..|.+++|+|+ + ++|++|+.||.|++||+++++.. .. +.+|...|.+++|+|++.+|+++
T Consensus 197 ~~v~~~~~~~~~~g-~~l~sgs~Dg~v~~wd~~~~~~~----~~-------------~~~h~~~v~~v~~~p~~~~l~s~ 258 (354)
T 2pbi_B 197 ADVLCLDLAPSETG-NTFVSGGCDKKAMVWDMRSGQCV----QA-------------FETHESDVNSVRYYPSGDAFASG 258 (354)
T ss_dssp SCEEEEEECCCSSC-CEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCeEEEEEEeCCCC-CEEEEEeCCCeEEEEECCCCcEE----EE-------------ecCCCCCeEEEEEeCCCCEEEEE
Confidence 99999999884 5 79999999999999999987533 22 34577899999999999999998
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+. +.|++||++. .+.+..+..+... ..+.+++|+|++.+|++|+.|+.|++||+.++ .....+.
T Consensus 259 s~D~~v~lwd~~~-~~~~~~~~~~~~~-------------~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~l~ 323 (354)
T 2pbi_B 259 SDDATCRLYDLRA-DREVAIYSKESII-------------FGASSVDFSLSGRLLFAGYNDYTINVWDVLKG-SRVSILF 323 (354)
T ss_dssp ETTSCEEEEETTT-TEEEEEECCTTCC-------------SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-SEEEEEC
T ss_pred eCCCeEEEEECCC-CcEEEEEcCCCcc-------------cceeEEEEeCCCCEEEEEECCCcEEEEECCCC-ceEEEEE
Confidence 75 9999999985 5555555433221 12368999999999999999999999999988 6778899
Q ss_pred cCCCcceeeeeccCCcceec
Q 012721 425 AGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~~ 444 (457)
+|..+|.+++|+|++...++
T Consensus 324 ~h~~~v~~l~~spdg~~l~s 343 (354)
T 2pbi_B 324 GHENRVSTLRVSPDGTAFCS 343 (354)
T ss_dssp CCSSCEEEEEECTTSSCEEE
T ss_pred CCCCcEEEEEECCCCCEEEE
Confidence 99999999999999988877
No 11
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.7e-40 Score=299.63 Aligned_cols=297 Identities=15% Similarity=0.174 Sum_probs=231.1
Q ss_pred cccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|.+.|++++|+|++ ++|++|+.|++|++|++.+.... ....+..+.+|.
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------------~~~~~~~~~~h~------ 65 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------------FGVPVRSFKGHS------ 65 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------------EEEEEEEEECCS------
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------------ccccceEEeCCc------
Confidence 3599999999999965 89999999999999998754321 123567789999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++| ++++.+|++++.|++|++||+.+++....+.. ....|.+++|.+....++...
T Consensus 66 ------~~v~~~~~--s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s---------- 126 (319)
T 3frx_A 66 ------HIVQDCTL--TADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGS---------- 126 (319)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEE----------
T ss_pred ------ccEEEEEE--CCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEe----------
Confidence 88999999 78999999999999999999999887655543 334577888775443333322
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC------CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD------CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
.++.+++||++. +++..+ .+|...|.+++++|. +..++++ .|+.|++||++ ..+....
T Consensus 127 ----~D~~i~vwd~~~----~~~~~~-~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~----- 191 (319)
T 3frx_A 127 ----RDKTIKVWTIKG----QCLATL-LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLN-QFQIEAD----- 191 (319)
T ss_dssp ----TTSCEEEEETTS----CEEEEE-CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETT-TTEEEEE-----
T ss_pred ----CCCeEEEEECCC----CeEEEE-eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECC-cchhhee-----
Confidence 266899999863 455555 789999999999985 4478888 99999999998 4444433
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
+.+|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+.. ...|.+++|+|++.
T Consensus 192 --~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~ 250 (319)
T 3frx_A 192 --FIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKKAM----YTLSA--------------QDEVFSLAFSPNRY 250 (319)
T ss_dssp --ECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------CSCEEEEEECSSSS
T ss_pred --ecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEecC--------------CCcEEEEEEcCCCC
Confidence 57899999999999999 99999999999999999987643 22222 35799999999999
Q ss_pred eEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 341 HLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 341 ~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+|++++++.+++|+++. ...+..+..+...... .....+.+++|+|||++|++|+.||.|+|||+.++
T Consensus 251 ~la~~~~~~i~v~~~~~-~~~~~~~~~~~~~~~~-------~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 251 WLAAATATGIKVFSLDP-QYLVDDLRPEFAGYSK-------AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEETT-EEEEEEECCCCTTCCG-------GGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEEcCCCcEEEEeCc-CeeeeccCcccccccc-------CcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999888899999974 4445444332111000 00011268999999999999999999999999765
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-39 Score=295.55 Aligned_cols=275 Identities=20% Similarity=0.350 Sum_probs=232.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++||+|+.||.|+||+..+++ ....+.+|.
T Consensus 20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~---------------------------~~~~~~~h~------- 65 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK---------------------------FEKTISGHK------- 65 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS-------
T ss_pred cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcc---------------------------cchhhccCC-------
Confidence 3499999999999999999999999999999987665 446678888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| ++++++|++++.|+.|++||+.+++....+
T Consensus 66 -----~~v~~~~~--~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~----------------------------------- 103 (312)
T 4ery_A 66 -----LGISDVAW--SSDSNLLVSASDDKTLKIWDVSSGKCLKTL----------------------------------- 103 (312)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CceEEEEE--cCCCCEEEEECCCCEEEEEECCCCcEEEEE-----------------------------------
Confidence 88999999 789999999999999999999887654331
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+|...|.+++|+|++++|++| .|+.|++||++ .++.... +..|.
T Consensus 104 --------------------------~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-------~~~~~ 149 (312)
T 4ery_A 104 --------------------------KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK-TGKCLKT-------LPAHS 149 (312)
T ss_dssp --------------------------ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred --------------------------cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCEEEEE-------ecCCC
Confidence 5788899999999999999999 99999999998 5555544 56788
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..|.+++|+|++ .+|++++.||.|++||+++++.. ..+. ..+...+..++|+|++++|++++.
T Consensus 150 ~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~l~~~~~ 212 (312)
T 4ery_A 150 DPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCL----KTLI------------DDDNPPVSFVKFSPNGKYILAATL 212 (312)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEE----EEEC------------CSSCCCEEEEEECTTSSEEEEEET
T ss_pred CcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcee----eEEe------------ccCCCceEEEEECCCCCEEEEEcC
Confidence 999999999999 99999999999999999987543 1111 123467999999999999999875
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-cCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
+.|++||++. ++.+..+.+|...... ....+ .+++.+|++|+.||.|++||+.++ .....+.+
T Consensus 213 d~~i~iwd~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~ 277 (312)
T 4ery_A 213 DNTLKLWDYSK-GKCLKTYTGHKNEKYC-------------IFANFSVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQG 277 (312)
T ss_dssp TTEEEEEETTT-TEEEEEECSSCCSSSC-------------CCEEEECSSSCEEEECCTTSCEEEEETTTC-CEEEEECC
T ss_pred CCeEEEEECCC-CcEEEEEEecCCceEE-------------EEEEEEeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhc
Confidence 9999999986 7788888877654321 12344 467899999999999999999998 77889999
Q ss_pred CCCcceeeeeccCCcceecc
Q 012721 426 GKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~~ 445 (457)
|...+.+++|+|+++..+++
T Consensus 278 h~~~v~~~~~~p~~~~l~s~ 297 (312)
T 4ery_A 278 HTDVVISTACHPTENIIASA 297 (312)
T ss_dssp CSSCEEEEEECSSSSEEEEE
T ss_pred cCCcEEEEeecCcCCceEEE
Confidence 99999999999999988763
No 13
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-40 Score=302.23 Aligned_cols=311 Identities=15% Similarity=0.154 Sum_probs=229.4
Q ss_pred ccCC-ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 30 QDVD-IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 30 ~h~~-~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.|.+ .|++++|+|+|++||+|+.|++|+||++.++... .......+|.
T Consensus 13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~------------------------~~~~~~~~h~------- 61 (345)
T 3fm0_A 13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWI------------------------CKSVLSEGHQ------- 61 (345)
T ss_dssp CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEE------------------------EEEEECSSCS-------
T ss_pred CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcce------------------------eeeeeccccC-------
Confidence 4777 9999999999999999999999999999876421 0112236787
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec-CCCceeeeeeccccccccccCCCCCceeccC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD-HFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++| +|++++|++++.|++|++|++..+.......+. ....|.+++|++....++...
T Consensus 62 -----~~v~~~~~--sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s---------- 124 (345)
T 3fm0_A 62 -----RTVRKVAW--SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCS---------- 124 (345)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEE----------
T ss_pred -----CcEEEEEE--CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEE----------
Confidence 88999999 789999999999999999999887654444443 345688888876433333222
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.++.+++||+.......++..+ .+|...|.+++|+|++++|+++ .|+.|++||.+ .+..... ..+.+|
T Consensus 125 ----~D~~v~iwd~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~-~~~~~~~-----~~~~~h 193 (345)
T 3fm0_A 125 ----RDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREE-EDDWVCC-----ATLEGH 193 (345)
T ss_dssp ----TTSCEEEEEECTTSCEEEEEEE-CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEE-TTEEEEE-----EEECCC
T ss_pred ----CCCeEEEEECCCCCCeEEEEEe-cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEec-CCCEEEE-----EEecCC
Confidence 2568999999876655666666 8899999999999999999999 99999999998 3332211 126789
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~ 345 (457)
...|.+++|+|++ ++|++++.|++|++||.......... ..... .........+.+ |...|.+++|+|++.+|+++
T Consensus 194 ~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~ 270 (345)
T 3fm0_A 194 ESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGV-ACSGS-DPSWKCICTLSGFHSRTIYDIAWCQLTGALATA 270 (345)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCC-CCC----CEEEEEEEECSSCSSCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccc-eeecc-CCccceeEEecCCCCCcEEEEEEecCCCEEEEE
Confidence 9999999999999 99999999999999997543211000 00000 000000111222 77899999999999999988
Q ss_pred ec-CcEEEEeccCCC---CceeE-----eeeccccccccccccCCCCccccceEEEcCCC-cEEEEEeCCCcEEEEecCC
Q 012721 346 DY-MNLKLWDIRMDS---TPVAT-----FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~---~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~s~~~dg~i~iw~~~~ 415 (457)
+. +.|++|+..... .+... ..+|...+ .+++|+|++ .+||+|+.||+|++|++.+
T Consensus 271 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V---------------~~v~~~p~~~~~laS~s~Dg~v~~W~~~~ 335 (345)
T 3fm0_A 271 CGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDV---------------NCVAWNPKEPGLLASCSDDGEVAFWKYQR 335 (345)
T ss_dssp ETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred eCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcE---------------eEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence 64 999999986422 11111 23455443 799999997 5999999999999999998
Q ss_pred CC
Q 012721 416 GS 417 (457)
Q Consensus 416 ~~ 417 (457)
++
T Consensus 336 ~~ 337 (345)
T 3fm0_A 336 PE 337 (345)
T ss_dssp --
T ss_pred CC
Confidence 74
No 14
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.6e-40 Score=310.45 Aligned_cols=300 Identities=18% Similarity=0.292 Sum_probs=226.7
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++||+|+.||+|+|||+.+++ ....+.+|.
T Consensus 63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~---------------------------~~~~~~~h~------- 108 (380)
T 3iz6_a 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ---------------------------KTHAIKLHC------- 108 (380)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTE---------------------------EEEEEECCC-------
T ss_pred cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc---------------------------cceEEecCC-------
Confidence 4599999999999999999999999999999988765 446778888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-----EEE-eecCCCceeeeeeccccccccccCCCCCc
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-----KIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
..|.+++| +|++++|++++.|+.+++|++...... ... -......+.++.|.+..+..+.+.
T Consensus 109 -----~~v~~~~~--s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~----- 176 (380)
T 3iz6_a 109 -----PWVMECAF--APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG----- 176 (380)
T ss_dssp -----TTCCCCEE--CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEE-----
T ss_pred -----CCEEEEEE--CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEE-----
Confidence 78999999 789999999999999999998753211 000 011122233444443322211111
Q ss_pred eeccCCccccccceEEEeccCccccccce-eeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
..++.+++||+.......... .+..+|...|.+++|++ ++.+|++| .|+.|++||++........
T Consensus 177 --------s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~---- 244 (380)
T 3iz6_a 177 --------SGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRT---- 244 (380)
T ss_dssp --------CTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEE----
T ss_pred --------CCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEE----
Confidence 135689999997643322211 12257999999999977 88999999 9999999999855555544
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
+.+|...|.+++|+|++ .+|++|+.||+|++||+++++.. ..+..+.. ....+...|++++|+|+|
T Consensus 245 ---~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~~~----~~~~~~~~------~~~~~~~~v~~~~~s~~g 310 (380)
T 3iz6_a 245 ---YHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGHQL----QVYNREPD------RNDNELPIVTSVAFSISG 310 (380)
T ss_dssp ---ECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTEEE----EEECCCCS------SSCCSSCSCSEEEECSSS
T ss_pred ---ECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCcEE----EEeccccc------ccccccCceEEEEECCCC
Confidence 67899999999999999 99999999999999999998654 23322110 011223468999999999
Q ss_pred CeEEEEec-CcEEEEeccCCCCceeEe----eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 340 QHLLSRDY-MNLKLWDIRMDSTPVATF----KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 340 ~~l~s~~~-~~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
++|++|+. |.|++||+.. ++.+..+ .+|...+ .+++|+||+.+|++|+.|++|++|++.
T Consensus 311 ~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 311 RLLFAGYSNGDCYVWDTLL-AEMVLNLGTLQNSHEGRI---------------SCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SEEEEECTTSCEEEEETTT-CCEEEEECCSCSSCCCCC---------------CEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred CEEEEEECCCCEEEEECCC-CceEEEEecccCCCCCce---------------EEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 99999975 9999999975 6666555 4566654 699999999999999999999999998
Q ss_pred CC
Q 012721 415 VG 416 (457)
Q Consensus 415 ~~ 416 (457)
..
T Consensus 375 ~~ 376 (380)
T 3iz6_a 375 GH 376 (380)
T ss_dssp SS
T ss_pred CC
Confidence 66
No 15
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-38 Score=291.85 Aligned_cols=302 Identities=16% Similarity=0.171 Sum_probs=224.1
Q ss_pred ccccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
..+|.+.|++|+|+|+ +++||||+.||+|+|||+.+.+.. ...+...+.+|.
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------------~~~~~~~l~~h~----- 86 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------------YGIPQRALRGHS----- 86 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------------SEEEEEEECCCS-----
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------------cceeeEEEeCCC-----
Confidence 3459999999999997 689999999999999999876542 233566788998
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++| ++++.+|++++.|+.|++|+.............. ..+....+.+....++..
T Consensus 87 -------~~V~~~~~--s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~s~---------- 146 (340)
T 4aow_A 87 -------HFVSDVVI--SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHT-KDVLSVAFSSDNRQIVSG---------- 146 (340)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SCEEEEEECTTSSCEEEE----------
T ss_pred -------CCEEEEEE--CCCCCEEEEEcccccceEEeecccceeeeecCCC-CceeEEEEeecCccceee----------
Confidence 88999999 7899999999999999999998876655443322 222333333222222211
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..++.+++|+...... ......+|...+.+++|++++ .+++++ .|+.|++||++ ..+.... +
T Consensus 147 ----s~d~~~~~~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~-~~~~~~~-------~ 211 (340)
T 4aow_A 147 ----SRDKTIKLWNTLGVCK---YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCKLKTN-------H 211 (340)
T ss_dssp ----ETTSCEEEECTTSCEE---EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TTEEEEE-------E
T ss_pred ----cCCCeEEEEEeCCCce---EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECC-CCceeeE-------e
Confidence 1256799998864322 222236899999999998754 567778 99999999998 5555544 5
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
.+|...|++++|+|++ ++|++|+.||.|++||+++.+.. ..+.. ...|.+++|+|++.+++
T Consensus 212 ~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~~~~~~~~~ 272 (340)
T 4aow_A 212 IGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGKHL----YTLDG--------------GDIINALCFSPNRYWLC 272 (340)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEECSSSSEEE
T ss_pred cCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCcee----eeecC--------------CceEEeeecCCCCceee
Confidence 7899999999999999 99999999999999999987543 22222 35799999999998888
Q ss_pred EEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 344 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 344 s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
++.++.|++||++. ...+..+..+..... .......|++++|+||+++|++|+.||.|+|||+.+|.
T Consensus 273 ~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~------~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 273 AATGPSIKIWDLEG-KIIVDELKQEVISTS------SKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp EEETTEEEEEETTT-TEEEEEECCC-------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred ccCCCEEEEEECCC-CeEEEeccccceeee------ccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 88889999999975 555554432211100 00011123799999999999999999999999999983
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.7e-38 Score=313.73 Aligned_cols=306 Identities=20% Similarity=0.290 Sum_probs=250.0
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|.+++|+|++++|++++.|+.|++|+.... .+..+.+|.
T Consensus 259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~----------------------------~~~~~~~h~------- 303 (577)
T 2ymu_A 259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQ----------------------------LLQTLTGHS------- 303 (577)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC----------------------------EEEEECCCS-------
T ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc----------------------------EEEEEecCC-------
Confidence 348899999999999999999999999999996432 445678888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| +|++.+|++++.|+.|++|+.......... .....+.+++|.+....++..
T Consensus 304 -----~~v~~~~~--~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~--~~~~~v~~~~~s~~g~~l~~~------------ 362 (577)
T 2ymu_A 304 -----SSVWGVAF--SPDGQTIASASDDKTVKLWNRNGQHLQTLT--GHSSSVWGVAFSPDGQTIASA------------ 362 (577)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTSCEEEEEC--CCSSCEEEEEECTTSSEEEEE------------
T ss_pred -----CCeEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCeeEEEe--CCCCCEEEEEECCCCCEEEEE------------
Confidence 88999999 789999999999999999998765543321 233456666665432222211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..++.+++|+.. .+.+..+ .+|...|.+++|+|++++|+++ .|+.|++||.. ++.... +.+|.
T Consensus 363 --~~dg~v~~~~~~----~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~-------~~~~~ 426 (577)
T 2ymu_A 363 --SDDKTVKLWNRN----GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHS 426 (577)
T ss_dssp --ETTSEEEEEETT----CCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEE-------EECCS
T ss_pred --eCCCEEEEEcCC----CCEEEEe-cCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------ecCCC
Confidence 125579999964 3444555 7899999999999999999999 99999999965 444443 57899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..|++++|+|++ ++|++++.|+.|++||.... .. . .+.+|...|.+++|+|++++|+++++
T Consensus 427 ~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~~~-~~----~-------------~~~~~~~~v~~~~~spd~~~las~~~ 487 (577)
T 2ymu_A 427 SSVWGVAFSPDD-QTIASASDDKTVKLWNRNGQ-LL----Q-------------TLTGHSSSVRGVAFSPDGQTIASASD 487 (577)
T ss_dssp SCEEEEEECTTS-SEEEEEETTSEEEEEETTSC-EE----E-------------EEECCSSCEEEEEECTTSCEEEEEET
T ss_pred CCeEEEEECCCC-CEEEEEcCCCEEEEEECCCC-EE----E-------------EEcCCCCCEEEEEEcCCCCEEEEEeC
Confidence 999999999999 99999999999999997542 11 1 13557789999999999999999875
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
+.|++||.. ++.+..+.+|...+ ++++|+||+++|++++.||.|++||. ++ +....+.+|
T Consensus 488 d~~i~iw~~~--~~~~~~~~~h~~~v---------------~~l~~s~dg~~l~s~~~dg~v~lwd~-~~-~~~~~~~~h 548 (577)
T 2ymu_A 488 DKTVKLWNRN--GQLLQTLTGHSSSV---------------RGVAFSPDGQTIASASDDKTVKLWNR-NG-QLLQTLTGH 548 (577)
T ss_dssp TSEEEEEETT--SCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSEEEEECT-TS-CEEEEEECC
T ss_pred CCEEEEEcCC--CCEEEEEeCCCCCE---------------EEEEEcCCCCEEEEEECcCEEEEEeC-CC-CEEEEEcCC
Confidence 999999964 78888999998765 69999999999999999999999996 45 678889999
Q ss_pred CCcceeeeeccCCcceec
Q 012721 427 KNENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~ 444 (457)
.++|.+++|+||+....+
T Consensus 549 ~~~v~~~~fs~dg~~l~s 566 (577)
T 2ymu_A 549 SSSVWGVAFSPDGQTIAS 566 (577)
T ss_dssp SSCEEEEEECTTSSCEEE
T ss_pred CCCEEEEEEcCCCCEEEE
Confidence 999999999999988776
No 17
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-38 Score=292.93 Aligned_cols=304 Identities=15% Similarity=0.134 Sum_probs=224.3
Q ss_pred ccCCceEEEEE-----CC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721 30 QDVDIVSAIEF-----DK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (457)
Q Consensus 30 ~h~~~V~~~~~-----s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (457)
.|.+.|++++| ++ ++++||+|+.|++|+||++...+.. .........+.+|.
T Consensus 19 gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~--------------------~~~~~~~~~l~~h~-- 76 (343)
T 2xzm_R 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN--------------------GYFGIPHKALTGHN-- 76 (343)
T ss_dssp CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS--------------------SBSEEEEEEECCCS--
T ss_pred cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc--------------------cccccccchhccCC--
Confidence 49999999999 77 8999999999999999999765421 00123456788998
Q ss_pred ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..|.+++| ++++.++++++.|++|++||+.+++....+.. ....|.+++|++....++...
T Consensus 77 ----------~~V~~~~~--~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~------ 137 (343)
T 2xzm_R 77 ----------HFVSDLAL--SQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAG------ 137 (343)
T ss_dssp ----------SCEEEEEE--CSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEE------
T ss_pred ----------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEc------
Confidence 88999999 78999999999999999999999877655543 344588888876544333332
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC----------CEEEEe-CCCeEEEEEcCCCcce
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC----------ETFVSA-DDLRINLWNLEISDQC 252 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~~l~~~-~d~~i~iwd~~~~~~~ 252 (457)
.++.+++||+....... .. ...+|...|.+++|+|++ .+|+++ .|+.|++||.. ...
T Consensus 138 --------~d~~i~~wd~~~~~~~~-~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~--~~~ 205 (343)
T 2xzm_R 138 --------AEREIKLWNILGECKFS-SA-EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQI 205 (343)
T ss_dssp --------TTSCEEEEESSSCEEEE-CC-TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT--TEE
T ss_pred --------CCCEEEEEeccCCceee-ee-cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC--Cce
Confidence 26689999986321111 11 113788999999999987 689998 99999999954 333
Q ss_pred eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
... +.+|...|.+++|+|++ ++|++|+.||.|++||++..... ...+ .+...|.+
T Consensus 206 ~~~-------~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~~---~~~~--------------~~~~~v~~ 260 (343)
T 2xzm_R 206 RYT-------FKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTYP---QREF--------------DAGSTINQ 260 (343)
T ss_dssp EEE-------EECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSSC---SEEE--------------ECSSCEEE
T ss_pred eEE-------EcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCccc---ceee--------------cCCCcEEE
Confidence 332 57899999999999999 99999999999999999543211 0111 12356999
Q ss_pred EEEccCCCeEEEEecCcEEEEeccCCCCcee--EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 333 IKFANDGQHLLSRDYMNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 333 ~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
++|+|+++++++++++.|++||+.+ .+... .+..+... ...... .....+.+++|+|++++|++|+.||.|++
T Consensus 261 v~~sp~~~~la~~~d~~v~iw~~~~-~~~~~~~~~~~~~~~--~~~~~~--~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~ 335 (343)
T 2xzm_R 261 IAFNPKLQWVAVGTDQGVKIFNLMT-QSKAPVCTIEAEPIT--KAEGQK--GKNPQCTSLAWNALGKKLFAGFTDGVIRT 335 (343)
T ss_dssp EEECSSSCEEEEEESSCEEEEESSS-CCSCSEEECCCCSGG--GBTTBC--CSCCCEEEEEECSSSCCEEEEETTSEEEE
T ss_pred EEECCCCCEEEEECCCCEEEEEeCC-CCCCceEEeecCcch--hhhhhc--CCCCceEEEEECCCCCeEEEecCCceEEE
Confidence 9999999999988889999999975 34332 33211000 000000 00012368999999999999999999999
Q ss_pred EecCCC
Q 012721 411 FSHGVG 416 (457)
Q Consensus 411 w~~~~~ 416 (457)
|++.++
T Consensus 336 w~~~~g 341 (343)
T 2xzm_R 336 FSFETS 341 (343)
T ss_dssp EEEEEE
T ss_pred EEEEcc
Confidence 999876
No 18
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-38 Score=298.27 Aligned_cols=283 Identities=19% Similarity=0.345 Sum_probs=218.0
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc-----
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE----- 103 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----- 103 (457)
+.|.+.|.|++|+|||++||+|+ ++.++||++.+++. +..+.+|...
T Consensus 61 ~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~---------------------------~~~l~~~~~~~~~~~ 112 (393)
T 1erj_A 61 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL---------------------------VARLSDDSAANKDPE 112 (393)
T ss_dssp EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCE---------------------------EEEECC---------
T ss_pred cCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCE---------------------------EEEecCccccccccc
Confidence 35999999999999999999987 67899999987763 2223332210
Q ss_pred -ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 104 -FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 104 -~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
+...........|.+++| ++++++|++++.|+.|++||+.+++....+
T Consensus 113 ~~~~~~~~~~~~~v~~v~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------- 161 (393)
T 1erj_A 113 NLNTSSSPSSDLYIRSVCF--SPDGKFLATGAEDRLIRIWDIENRKIVMIL----------------------------- 161 (393)
T ss_dssp --------CCCCBEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------
T ss_pred cccccccCCCceeEEEEEE--CCCCCEEEEEcCCCeEEEEECCCCcEEEEE-----------------------------
Confidence 000000111245999999 789999999999999999999887654321
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
.+|...|.+++|+|++++|+++ .|+.|++||++ .++....+
T Consensus 162 --------------------------------~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~-~~~~~~~~----- 203 (393)
T 1erj_A 162 --------------------------------QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-TGQCSLTL----- 203 (393)
T ss_dssp --------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE-----
T ss_pred --------------------------------ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECC-CCeeEEEE-----
Confidence 6899999999999999999999 99999999998 55554432
Q ss_pred cccCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
.+...+.+++|+| ++ .+|++|+.||.|++||+++++.. ..+.. ......+|...|.+++|+|+|+
T Consensus 204 ---~~~~~v~~~~~~~~~~-~~l~~~s~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 204 ---SIEDGVTTVAVSPGDG-KYIAAGSLDRAVRVWDSETGFLV----ERLDS------ENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp ---ECSSCEEEEEECSTTC-CEEEEEETTSCEEEEETTTCCEE----EEEC------------CCCSSCEEEEEECTTSS
T ss_pred ---EcCCCcEEEEEECCCC-CEEEEEcCCCcEEEEECCCCcEE----Eeecc------cccCCCCCCCCEEEEEECCCCC
Confidence 2456799999999 66 99999999999999999987543 11111 0112356888999999999999
Q ss_pred eEEEEec-CcEEEEeccCC-----------CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721 341 HLLSRDY-MNLKLWDIRMD-----------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (457)
Q Consensus 341 ~l~s~~~-~~i~~wd~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 408 (457)
+|++++. +.|++||++.. +.+...+.+|...+ ++++|+|++.+|++|+.|+.|
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFV---------------LSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp EEEEEETTSEEEEEEC---------------CEEEEEECCSSCE---------------EEEEECGGGCEEEEEETTSEE
T ss_pred EEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcE---------------EEEEECCCCCEEEEEeCCCeE
Confidence 9999874 99999999642 12344556666654 689999999999999999999
Q ss_pred EEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 409 RIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
++||+.++ .....+.+|...|.+++|+|.
T Consensus 335 ~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 335 LFWDKKSG-NPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp EEEETTTC-CEEEEEECCSSCEEEEEECSS
T ss_pred EEEECCCC-eEEEEECCCCCCEEEEEecCC
Confidence 99999998 678889999999999999873
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=291.36 Aligned_cols=249 Identities=18% Similarity=0.222 Sum_probs=199.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.+|...|.+++|+|++ .|++|+.||+|+|||+.+++.. ......+.+|.
T Consensus 79 ~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~H~------- 127 (344)
T 4gqb_B 79 VQTEAGVADLTWVGER-GILVASDSGAVELWELDENETL-----------------------IVSKFCKYEHD------- 127 (344)
T ss_dssp EEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSC-----------------------EEEEEEEECCS-------
T ss_pred eccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCce-----------------------eEeeccccCCC-------
Confidence 3467889999999985 6789999999999999987642 11223456888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|++++| ++++++|++++.|++|++||+.+++....+
T Consensus 128 -----~~V~~v~~--spdg~~l~sgs~d~~i~iwd~~~~~~~~~~----------------------------------- 165 (344)
T 4gqb_B 128 -----DIVSTVSV--LSSGTQAVSGSKDICIKVWDLAQQVVLSSY----------------------------------- 165 (344)
T ss_dssp -----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE-----------------------------------
T ss_pred -----CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 88999999 789999999999999999999987654431
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+|...|.+++|+|++. +|+++ .|+.|++||++ .++....+ ....+
T Consensus 166 --------------------------~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~-~~~~~~~~-----~~~~~ 213 (344)
T 4gqb_B 166 --------------------------RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTR-CPKPASQI-----GCSAP 213 (344)
T ss_dssp --------------------------CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETT-SSSCEEEC-----C----
T ss_pred --------------------------cCcCCceEEEEecCCCCCceeeecccccccccccc-ccceeeee-----eccee
Confidence 68999999999999875 67888 99999999998 45544432 13456
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~ 345 (457)
...+.+++|+|++.++|++|+.||+|++||+++++.. .. +.+|...|++++|+|++ ++|++|
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~-------------~~~h~~~v~~v~fsp~g~~~lasg 276 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV----LS-------------SAVHSQCVTGLVFSPHSVPFLASL 276 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC----EE-------------EECCSSCEEEEEECSSSSCCEEEE
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE----EE-------------EcCCCCCEEEEEEccCCCeEEEEE
Confidence 6779999999976589999999999999999987532 22 45678899999999998 578888
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCC
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~ 416 (457)
+. ++|++||+++ ++ +..+.+|...+ ++++|+|++. +|++++.|++|++|++.+.
T Consensus 277 s~D~~i~vwd~~~-~~-~~~~~~H~~~V---------------~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 277 SEDCSLAVLDSSL-SE-LFRSQAHRDFV---------------RDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp ETTSCEEEECTTC-CE-EEEECCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred eCCCeEEEEECCC-Cc-EEEEcCCCCCE---------------EEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 74 9999999975 44 45677888765 7999999986 6779999999999999876
No 20
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6e-38 Score=309.81 Aligned_cols=321 Identities=19% Similarity=0.272 Sum_probs=251.6
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|++.|+|++|||||++||+|+.|++|+|||.. ++ .+..+.+|.
T Consensus 12 L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~~-~~---------------------------~~~~l~gh~------ 57 (577)
T 2ymu_A 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQ---------------------------LLQTLTGHS------ 57 (577)
T ss_dssp ECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SC---------------------------EEEEEECCS------
T ss_pred ECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECC-CC---------------------------EEEEEeCCC------
Confidence 34599999999999999999999999999999953 32 456889999
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC-------
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP------- 180 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 180 (457)
+.|.+++| +|++++|++++.|++|++||.. ++....+.. ....|.+++|++....++......
T Consensus 58 ------~~V~~l~f--spdg~~las~~~d~~i~vWd~~-~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~ 127 (577)
T 2ymu_A 58 ------SSVWGVAF--SPDGQTIASASDDKTVKLWNRN-GQLLQTLTG-HSSSVRGVAFSPDGQTIASASDDKTVKLWNR 127 (577)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSCEEEEETT-SCEEEEECC-CSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCEEEEEECC-CCEEEEEEC-CCCCEEEEEECCCCCEEEEEcCCCceeeccc
Confidence 88999999 7899999999999999999965 444443332 334577777776433222211100
Q ss_pred ---------------------------------------------------------CceeccCCcc----ccccceEEE
Q 012721 181 ---------------------------------------------------------SFAHGYHLEW----TENMATKIA 199 (457)
Q Consensus 181 ---------------------------------------------------------~~~~~~~~~~----~~~~~i~~~ 199 (457)
...+.+++.+ ..++.+++|
T Consensus 128 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w 207 (577)
T 2ymu_A 128 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 207 (577)
T ss_dssp TCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred ccceeeeccCCCCceeeeeeecCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEE
Confidence 0122223322 123478888
Q ss_pred eccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC
Q 012721 200 NVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI 278 (457)
Q Consensus 200 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~ 278 (457)
+.+ .+.++.+ .+|...|.+++|+|++++|+++ .|+.|++||.. ++.+.. +.+|...|.+++|+|+
T Consensus 208 ~~~----~~~~~~~-~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~-------~~~~~~~v~~v~~~~d 273 (577)
T 2ymu_A 208 NRN----GQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQT-------LTGHSSSVNGVAFRPD 273 (577)
T ss_dssp CTT----SCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTT--SCEEEE-------ECCCSSCEEEEEECTT
T ss_pred eCC----CcEEEEE-ecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEE-------EecCCCCEEEEEEcCC
Confidence 854 2444444 7899999999999999999999 99999999976 444443 5789999999999999
Q ss_pred CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccC
Q 012721 279 YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRM 357 (457)
Q Consensus 279 ~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~ 357 (457)
+ ..|++++.|+.|++||..... . .. +.+|...|.+++|+|++++|+++++ +.|++||..
T Consensus 274 ~-~~l~~~~~d~~i~~w~~~~~~-~----~~-------------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~- 333 (577)
T 2ymu_A 274 G-QTIASASDDKTVKLWNRNGQL-L----QT-------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN- 333 (577)
T ss_dssp S-SEEEEEETTSCEEEEETTSCE-E----EE-------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-
T ss_pred C-CEEEEEeCCCEEEEEeCCCcE-E----EE-------------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-
Confidence 9 999999999999999965421 1 11 3457789999999999999999875 999999985
Q ss_pred CCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721 358 DSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (457)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p 437 (457)
+..+..+.+|...+ .+++|+|++++|++++.|+.|++|+.. + +....+.+|..++++++|+|
T Consensus 334 -~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~~~dg~v~~~~~~-~-~~~~~~~~~~~~v~~~~~s~ 395 (577)
T 2ymu_A 334 -GQHLQTLTGHSSSV---------------WGVAFSPDGQTIASASDDKTVKLWNRN-G-QLLQTLTGHSSSVRGVAFSP 395 (577)
T ss_dssp -SCEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETT-C-CEEEEEECCSSCEEEEEECT
T ss_pred -CCeeEEEeCCCCCE---------------EEEEECCCCCEEEEEeCCCEEEEEcCC-C-CEEEEecCCCCCeEEEEECC
Confidence 56667777777654 689999999999999999999999964 4 57888999999999999999
Q ss_pred CCcceec
Q 012721 438 APRARRS 444 (457)
Q Consensus 438 ~~~~~~~ 444 (457)
++...++
T Consensus 396 dg~~l~~ 402 (577)
T 2ymu_A 396 DGQTIAS 402 (577)
T ss_dssp TSSCEEE
T ss_pred CCCEEEE
Confidence 9987766
No 21
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=287.94 Aligned_cols=242 Identities=18% Similarity=0.272 Sum_probs=210.6
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|.+++|++++.++++|+.|++|+|||+.+++ .+..+..|.
T Consensus 77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~---------------------------~~~~~~~~~------- 122 (321)
T 3ow8_A 77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGK---------------------------QIKSIDAGP------- 122 (321)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCT-------
T ss_pred ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCC---------------------------EEEEEeCCC-------
Confidence 3599999999999999999999999999999998765 345667776
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..+.+++| +|++++|++++.|+.|++|++.+++.....
T Consensus 123 -----~~~~~~~~--spdg~~l~~g~~dg~v~i~~~~~~~~~~~~----------------------------------- 160 (321)
T 3ow8_A 123 -----VDAWTLAF--SPDSQYLATGTHVGKVNIFGVESGKKEYSL----------------------------------- 160 (321)
T ss_dssp -----TCCCCEEE--CTTSSEEEEECTTSEEEEEETTTCSEEEEE-----------------------------------
T ss_pred -----ccEEEEEE--CCCCCEEEEEcCCCcEEEEEcCCCceeEEe-----------------------------------
Confidence 67889999 789999999999999999999887654322
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..|...|.+++|+|++++|++| .|+.|++||++ .++.+.. +.+|.
T Consensus 161 --------------------------~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~-~~~~~~~-------~~~h~ 206 (321)
T 3ow8_A 161 --------------------------DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA-TGKLLHT-------LEGHA 206 (321)
T ss_dssp --------------------------ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECCCS
T ss_pred --------------------------cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECC-CCcEEEE-------EcccC
Confidence 4567789999999999999999 99999999998 5555544 57899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..|.+++|+|++ .+|++|+.|+.|++||+++++.. .. +.+|...|.+++|+|++++|++++.
T Consensus 207 ~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~~~----~~-------------~~~h~~~v~~~~~sp~~~~l~s~s~ 268 (321)
T 3ow8_A 207 MPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHANLA----GT-------------LSGHASWVLNVAFCPDDTHFVSSSS 268 (321)
T ss_dssp SCCCEEEECTTS-CEEEEECTTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CceeEEEEcCCC-CEEEEEcCCCeEEEEECCCccee----EE-------------EcCCCCceEEEEECCCCCEEEEEeC
Confidence 999999999999 99999999999999999886432 12 3567889999999999999999875
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+.|++||+++ ++++..+.+|...+ .+++|+|++.+|++++.||.|++||+.
T Consensus 269 D~~v~iwd~~~-~~~~~~~~~h~~~v---------------~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 269 DKSVKVWDVGT-RTCVHTFFDHQDQV---------------WGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp TSCEEEEETTT-TEEEEEECCCSSCE---------------EEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEeCCC-CEEEEEEcCCCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 9999999986 78888888888765 699999999999999999999999974
No 22
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-38 Score=298.46 Aligned_cols=242 Identities=20% Similarity=0.340 Sum_probs=210.7
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|.+++|+|++++||+|+.|++|+|||+.+.+ ++..+.+|.
T Consensus 147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~---------------------------~~~~~~~h~------- 192 (410)
T 1vyh_C 147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFE---------------------------CIRTMHGHD------- 192 (410)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSC---------------------------EEECCCCCS-------
T ss_pred eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCc---------------------------eeEEEcCCC-------
Confidence 3599999999999999999999999999999987654 556788898
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| +|++.+|++++.|++|++||+.++.....+
T Consensus 193 -----~~V~~v~~--~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~----------------------------------- 230 (410)
T 1vyh_C 193 -----HNVSSVSI--MPNGDHIVSASRDKTIKMWEVQTGYCVKTF----------------------------------- 230 (410)
T ss_dssp -----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CCEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 88999999 688999999999999999999887654331
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+|...|.++.++|++.+|++| .|+.|++||+. .+..... +.+|.
T Consensus 231 --------------------------~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~-~~~~~~~-------~~~h~ 276 (410)
T 1vyh_C 231 --------------------------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA-TKECKAE-------LREHR 276 (410)
T ss_dssp --------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCS
T ss_pred --------------------------eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECC-CCceeeE-------ecCCC
Confidence 5788899999999999999999 99999999998 4555543 57899
Q ss_pred CceEEEEEecC--------------------CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 268 EVITSAEFHPI--------------------YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 268 ~~i~~v~~~p~--------------------~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
..|.+++|+|+ + .+|++|+.|+.|++||+++++.. .. +.+|.
T Consensus 277 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~sgs~D~~i~iwd~~~~~~~----~~-------------~~~h~ 338 (410)
T 1vyh_C 277 HVVECISWAPESSYSSISEATGSETKKSGKPG-PFLLSGSRDKTIKMWDVSTGMCL----MT-------------LVGHD 338 (410)
T ss_dssp SCEEEEEECCSCGGGGGGGCCSCC-------C-CEEEEEETTSEEEEEETTTTEEE----EE-------------EECCS
T ss_pred ceEEEEEEcCcccccchhhhccccccccCCCC-CEEEEEeCCCeEEEEECCCCceE----EE-------------EECCC
Confidence 99999999996 4 68999999999999999987543 22 35577
Q ss_pred cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 328 ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
..|.+++|+|+|++|+++++ +.|++||+.. ++++..+.+|...+ ++++|+|++.+|++|+.||
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~l~~~~~~~~l~sgs~D~ 402 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLNAHEHFV---------------TSLDFHKTAPYVVTGSVDQ 402 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTT-SCCCEEEECCSSCE---------------EEEEECSSSSCEEEEETTS
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CceEEEEcCCCCcE---------------EEEEEcCCCCEEEEEeCCC
Confidence 89999999999999999875 9999999975 78888999998765 7999999999999999999
Q ss_pred cEEEEecC
Q 012721 407 LLRIFSHG 414 (457)
Q Consensus 407 ~i~iw~~~ 414 (457)
+|++|+++
T Consensus 403 ~i~vW~~r 410 (410)
T 1vyh_C 403 TVKVWECR 410 (410)
T ss_dssp EEEEEC--
T ss_pred cEEEEeCC
Confidence 99999964
No 23
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-38 Score=285.80 Aligned_cols=284 Identities=14% Similarity=0.197 Sum_probs=206.1
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-cc-CCcccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QS-HEPEFDYL 107 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~ 107 (457)
.|.++|++++|+|+ +||+|+.|++|+||++..+.. .....+ .+ |.
T Consensus 12 ~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~-------------------------~~~~~~~~~~h~------ 58 (330)
T 2hes_X 12 LYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF-------------------------TLIDVLDETAHK------ 58 (330)
T ss_dssp CCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC-------------------------EEEEEECTTCCC------
T ss_pred cCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe-------------------------EEEEEEecCCcc------
Confidence 49999999999987 999999999999999876532 133334 33 77
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+.|.+++| +|++++|++++.|++|++|++.......
T Consensus 59 ------~~v~~v~~--sp~~~~las~s~D~~v~iw~~~~~~~~~------------------------------------ 94 (330)
T 2hes_X 59 ------KAIRSVAW--RPHTSLLAAGSFDSTVSIWAKEESADRT------------------------------------ 94 (330)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSCEEEEEC-------------------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCcEEEEEcccCcCcc------------------------------------
Confidence 88999999 7899999999999999999986432100
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
...+++..+ .+|...|.+++|+|++++|++| .|+.|++||++..+.....+ ..+.+|
T Consensus 95 -----------------~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~----~~~~~h 152 (330)
T 2hes_X 95 -----------------FEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI----SVLQEH 152 (330)
T ss_dssp -----------------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE----EEECCC
T ss_pred -----------------ccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE----EEeccC
Confidence 000122222 7899999999999999999999 99999999995333221111 126789
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC--CCeEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND--GQHLLS 344 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~--g~~l~s 344 (457)
...|.+++|+|++ .+|++++.|++|++||.+.+... . ...+.+|...|.+++|+|+ +.+|++
T Consensus 153 ~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~~-----~----------~~~~~~h~~~v~~~~~~~~~~~~~l~s 216 (330)
T 2hes_X 153 SQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDWE-----C----------VAVLNGHEGTVWSSDFDKTEGVFRLCS 216 (330)
T ss_dssp SSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEEE-----E----------EEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred CCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCee-----E----------EEEccCCCCcEEEEEecCCCCeeEEEE
Confidence 9999999999999 99999999999999998765210 0 1124567889999999998 678888
Q ss_pred Eec-CcEEEEeccCCC-------CceeEeee-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 345 RDY-MNLKLWDIRMDS-------TPVATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+++ ++|++||++... .....+.. |...+ ++++|++++ +|++++.||.|++|+..+
T Consensus 217 ~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~v~~s~~~-~l~s~~~dg~v~iw~~~~ 280 (330)
T 2hes_X 217 GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQV---------------YNVAWGFNG-LIASVGADGVLAVYEEVD 280 (330)
T ss_dssp EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCE---------------EEEEECTTS-CEEEEETTSCEEEEEEET
T ss_pred EeCCCeEEEEEecCCCccccceeEEeeecccccccce---------------EEEEEcCCC-EEEEEeCCCEEEEEEcCC
Confidence 875 999999996421 12222322 44433 789999765 899999999999999987
Q ss_pred CCc-ee-eEEecCCC-cceeeeecc--CCcceec
Q 012721 416 GSA-GG-ITVEAGKN-ENRKPILQA--APRARRS 444 (457)
Q Consensus 416 ~~~-~~-~~~~~~~~-~v~~~~~~p--~~~~~~~ 444 (457)
++. .. ....+|.. .+.+++|+| ++...++
T Consensus 281 ~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las 314 (330)
T 2hes_X 281 GEWKVFAKRALCHGVYEINVVKWLELNGKTILAT 314 (330)
T ss_dssp TEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred CceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence 731 12 23367887 899999999 5665555
No 24
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.3e-37 Score=286.17 Aligned_cols=244 Identities=23% Similarity=0.375 Sum_probs=207.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|.+++|+|++++||+|+.|+.|++|++.+.+. .......+.+|.
T Consensus 95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~-----------------------~~~~~~~~~~h~-------- 143 (340)
T 1got_B 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREG-----------------------NVRVSRELAGHT-------- 143 (340)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSB-----------------------SCEEEEEEECCS--------
T ss_pred cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCC-----------------------cceeEEEecCCC--------
Confidence 4788999999999999999999999999999876542 223556788888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.++.|. +++ .+++++.|++|++||+.+++....+
T Consensus 144 ----~~v~~~~~~--~~~-~l~s~s~d~~i~~wd~~~~~~~~~~------------------------------------ 180 (340)
T 1got_B 144 ----GYLSCCRFL--DDN-QIVTSSGDTTCALWDIETGQQTTTF------------------------------------ 180 (340)
T ss_dssp ----SCEEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEEE------------------------------------
T ss_pred ----ccEEEEEEC--CCC-cEEEEECCCcEEEEECCCCcEEEEE------------------------------------
Confidence 889999994 454 6899999999999999887654321
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
.+|...|.+++|+|++++|++| .|+.|++||++ .+..... +.+|..
T Consensus 181 -------------------------~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~-~~~~~~~-------~~~h~~ 227 (340)
T 1got_B 181 -------------------------TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR-EGMCRQT-------FTGHES 227 (340)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCSEEEE-------ECCCSS
T ss_pred -------------------------cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-CCeeEEE-------EcCCcC
Confidence 5788999999999999999999 99999999998 5555544 578999
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
.|.+++|+|++ ++|++|+.||+|++||+++++.. ..+.. ..+...|.+++|+|+|++|++|++
T Consensus 228 ~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~----~~~~~-----------~~~~~~v~~~~~s~~g~~l~~g~~d 291 (340)
T 1got_B 228 DINAICFFPNG-NAFATGSDDATCRLFDLRADQEL----MTYSH-----------DNIICGITSVSFSKSGRLLLAGYDD 291 (340)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEEEEETT
T ss_pred CEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCcEE----EEEcc-----------CCcccceEEEEECCCCCEEEEECCC
Confidence 99999999999 99999999999999999987543 12211 122357999999999999999875
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+.|++||+.. .+.+..+.+|...+ .+++|+||+.+|++|+.|+.|+|||
T Consensus 292 ~~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 292 FNCNVWDALK-ADRAGVLAGHDNRV---------------SCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp SEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CeEEEEEccc-CcEeeEeecCCCcE---------------EEEEEcCCCCEEEEEcCCccEEecC
Confidence 9999999975 78888899998865 6899999999999999999999997
No 25
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.6e-38 Score=281.75 Aligned_cols=258 Identities=15% Similarity=0.229 Sum_probs=200.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|+|++||+|+.|++|+||++.+... +.+.++.+|.
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-------------------------~~~~~l~gH~------- 53 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE------- 53 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-------------------------CCCEEECCCS-------
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-------------------------EEEEEEcccc-------
Confidence 35999999999999999999999999999999875422 2456789999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
++|.+++|.+..++++|++++.|++|++||+.+++....
T Consensus 54 -----~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~------------------------------------ 92 (297)
T 2pm7_B 54 -----GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQI------------------------------------ 92 (297)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCC------------------------------------
T ss_pred -----CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEE------------------------------------
Confidence 889999995322488999999999999999987642211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
..+ .+|...|.+++|+|+ +.+|+++ .|+.|++||++....... ..+.+
T Consensus 93 ----------------------~~~-~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~------~~~~~ 143 (297)
T 2pm7_B 93 ----------------------AVH-AVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP------IIIDA 143 (297)
T ss_dssp ----------------------EEE-CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC------EEEEC
T ss_pred ----------------------EEe-ecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee------eeeec
Confidence 111 578889999999997 8899999 999999999984322211 12578
Q ss_pred CCCceEEEEEecCC------------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE
Q 012721 266 LTEVITSAEFHPIY------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (457)
Q Consensus 266 ~~~~i~~v~~~p~~------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 333 (457)
|...|.+++|+|++ ..+|++|+.|++|++||+++++... .. ...+.+|...|.++
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~---~~----------~~~l~~H~~~V~~v 210 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTY---VL----------ESTLEGHSDWVRDV 210 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEE---EE----------EEEECCCSSCEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceE---EE----------EEEecCCCCceEEE
Confidence 99999999999972 1699999999999999998753110 00 11246788999999
Q ss_pred EEccCC---CeEEEEec-CcEEEEeccCCCCc-e-eEe--eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 334 KFANDG---QHLLSRDY-MNLKLWDIRMDSTP-V-ATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 334 ~~s~~g---~~l~s~~~-~~i~~wd~~~~~~~-~-~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
+|+|++ .+|++++. ++|++||++..... . ..+ ..|...+ .+++|+|++++||+++.|
T Consensus 211 ~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~g~~las~~~D 275 (297)
T 2pm7_B 211 AWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGGD 275 (297)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCE---------------EEEEECSSSCCEEEEETT
T ss_pred EECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcE---------------EEEEECCCCCEEEEEcCC
Confidence 999985 88998874 99999999752211 1 122 2333332 689999999999999999
Q ss_pred CcEEEEecCCC
Q 012721 406 NLLRIFSHGVG 416 (457)
Q Consensus 406 g~i~iw~~~~~ 416 (457)
+.|+||+....
T Consensus 276 ~~v~lw~~~~~ 286 (297)
T 2pm7_B 276 NKVTLWKENLE 286 (297)
T ss_dssp SCEEEEEECTT
T ss_pred CcEEEEEECCC
Confidence 99999998743
No 26
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=299.05 Aligned_cols=329 Identities=12% Similarity=0.170 Sum_probs=248.6
Q ss_pred cccCCceEEEEECCCCC-EEEEE----------eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee
Q 012721 29 LQDVDIVSAIEFDKTGD-YLAVG----------DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF 97 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~-~latg----------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (457)
+.+...|.+++|+|+++ +||+| +.|+.|+||++.++... +.+..
T Consensus 9 l~~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~------------------------~~~~~- 63 (416)
T 2pm9_A 9 LAEFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSE------------------------KPIAS- 63 (416)
T ss_dssp -CEEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC------------------------SCSCC-
T ss_pred HhhhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCC------------------------cEEEE-
Confidence 44667899999999987 99999 88999999999876521 01111
Q ss_pred ccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc---c-ceeEEEeecCCCceeeeeeccccccc
Q 012721 98 QSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD---Q-KVKKIKEMDHFPFVSSENTLLAEKNF 173 (457)
Q Consensus 98 ~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (457)
..|. ..|.+++| ++++.+|++++.|+.|++|++.. + +....+ ......+.+++|.+..+..
T Consensus 64 ~~~~------------~~v~~~~~--s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~ 128 (416)
T 2pm9_A 64 LQVD------------SKFNDLDW--SHNNKIIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNV 128 (416)
T ss_dssp CCCS------------SCEEEEEE--CSSSSCEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTB
T ss_pred EecC------------CceEEEEE--CCCCCeEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCE
Confidence 2344 78999999 78999999999999999999987 2 222222 2344567888888764444
Q ss_pred cccCCCCCceeccCCccccccceEEEeccCcc------ccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEE
Q 012721 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSV------HARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWN 245 (457)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd 245 (457)
+.+.. .++.+++||+.... ........ ..|...|.+++|+|+ +.+|+++ .|+.|++||
T Consensus 129 l~s~~-------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 129 LASGG-------------NNGEIFIWDMNKCTESPSNYTPLTPGQS-MSSVDEVISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp EEEEC-------------SSSCEEBCBTTTTSSCTTTCCCBCCCCS-CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred EEEEc-------------CCCeEEEEECCCCccccccccccccccc-cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 33322 25689999998654 22222222 678999999999998 7889998 999999999
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC---eEEEEEccCCeeeccccccccccccccCcccc
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG---FVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg---~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
++ .++....+... ....+|...+.+++|+|++..+|++++.|+ .|++||++++... ...
T Consensus 195 ~~-~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~~------------- 256 (416)
T 2pm9_A 195 LK-AKKEVIHLSYT-SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTP---LQT------------- 256 (416)
T ss_dssp TT-TTEEEEEECCC-CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SBC-------------
T ss_pred CC-CCCcceEEecc-ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cEE-------------
Confidence 98 55555443211 112234789999999999757999999998 9999999885311 111
Q ss_pred ee-ccccceEEEEEcc-CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC-cE
Q 012721 323 FT-EIIASISDIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG-LH 398 (457)
Q Consensus 323 ~~-~h~~~v~~~~~s~-~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~ 398 (457)
+. +|...|.+++|+| ++++|++++. +.|++||++. ++++..+..|...+ ++++|+|++ .+
T Consensus 257 ~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~~ 320 (416)
T 2pm9_A 257 LNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES-AEQLSQFPARGNWC---------------FKTKFAPEAPDL 320 (416)
T ss_dssp CCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS-CCEEEEEECSSSCC---------------CCEEECTTCTTE
T ss_pred eecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC-CccceeecCCCCce---------------EEEEECCCCCCE
Confidence 23 5678999999999 8999999875 9999999986 78888898888765 689999998 89
Q ss_pred EEEEeCCCcEEEEecCCCCceeeE----------------------------------EecCCCcceeeeeccCCcceec
Q 012721 399 FATGSYSNLLRIFSHGVGSAGGIT----------------------------------VEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 399 l~s~~~dg~i~iw~~~~~~~~~~~----------------------------------~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|++++.|+.|++|++.++...... ...|..++..++|+|++...++
T Consensus 321 l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~ 400 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQI 400 (416)
T ss_dssp EEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECB
T ss_pred EEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEE
Confidence 999999999999999887432211 0116788889999999998887
Q ss_pred c
Q 012721 445 S 445 (457)
Q Consensus 445 ~ 445 (457)
|
T Consensus 401 ~ 401 (416)
T 2pm9_A 401 T 401 (416)
T ss_dssp C
T ss_pred e
Confidence 3
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.2e-37 Score=309.25 Aligned_cols=307 Identities=17% Similarity=0.219 Sum_probs=231.6
Q ss_pred ccccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...|.+.|++++|+|++ ++|+||+.|++|+||++...... .......+.+|.
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------------~~~~~~~~~~h~----- 430 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------------YGVAQRRLTGHS----- 430 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------------SCEEEEEEECCS-----
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------------cccccceecCCC-----
Confidence 34599999999999865 79999999999999999765431 122456788998
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++| ++++++|++++.|++|++||+.++.....+.. ....|.+++|++....++....
T Consensus 431 -------~~v~~v~~--s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s~-------- 492 (694)
T 3dm0_A 431 -------HFVEDVVL--SSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSASR-------- 492 (694)
T ss_dssp -------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEET--------
T ss_pred -------CcEEEEEE--CCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEeC--------
Confidence 88999999 78999999999999999999999877655543 3455888888765544443332
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
++.+++||............ ..+|...|.+++|+|++ ..|+++ .|+.|++||++ ..+.... +
T Consensus 493 ------D~~i~iwd~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~-~~~~~~~-------~ 557 (694)
T 3dm0_A 493 ------DRTIKLWNTLGECKYTISEG-GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS-NCKLRST-------L 557 (694)
T ss_dssp ------TSCEEEECTTSCEEEEECSS-TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETT-TCCEEEE-------E
T ss_pred ------CCEEEEEECCCCcceeeccC-CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECC-CCcEEEE-------E
Confidence 66899999754322221111 15789999999999986 578888 99999999998 5555543 6
Q ss_pred cCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 264 DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
.+|...|++++|+|++ ++|++|+.||.|++||+++++.. ..+.. ...|.+++|+|++.+|+
T Consensus 558 ~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~~~----~~~~~--------------~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 558 AGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGKKL----YSLEA--------------NSVIHALCFSPNRYWLC 618 (694)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTEEE----ECCBC--------------SSCEEEEEECSSSSEEE
T ss_pred cCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCceE----EEecC--------------CCcEEEEEEcCCCcEEE
Confidence 7899999999999999 99999999999999999988643 22222 35799999999999999
Q ss_pred EEecCcEEEEeccCCCCceeEeeeccccccccc----cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 344 SRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 344 s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+++++.|++||++. ++.+..+..+........ ..........+++++|+|||++|++|+.||.|+||++.
T Consensus 619 ~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 619 AATEHGIKIWDLES-KSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEETTEEEEEETTT-TEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEcCCCEEEEECCC-CCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 99888899999985 666666554322110000 00000111223689999999999999999999999985
No 28
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-37 Score=295.37 Aligned_cols=287 Identities=13% Similarity=0.130 Sum_probs=220.3
Q ss_pred ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.|...|+||+|+| ++++||+|+.||+|+|||+.+++.. ....+.+|.
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~-------------------------~~~~~~gH~------- 164 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP-------------------------TFIKGIGAG------- 164 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC-------------------------EEECCCSSS-------
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce-------------------------eEEEccCCC-------
Confidence 4788999999999 5689999999999999999876542 445667888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|++|+|+| .++.+|++++.|++|++||++++........
T Consensus 165 -----~~V~~l~f~p-~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~--------------------------------- 205 (435)
T 4e54_B 165 -----GSITGLKFNP-LNTNQFYASSMEGTTRLQDFKGNILRVFASS--------------------------------- 205 (435)
T ss_dssp -----CCCCEEEECS-SCTTEEEEECSSSCEEEEETTSCEEEEEECC---------------------------------
T ss_pred -----CCEEEEEEeC-CCCCEEEEEeCCCEEEEeeccCCceeEEecc---------------------------------
Confidence 8899999942 3678999999999999999987644322110
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..+...+.+++|+|++.+|++| .|+.|++||++ .. .+. .+.+|.
T Consensus 206 --------------------------~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~-~~~-------~~~~h~ 250 (435)
T 4e54_B 206 --------------------------DTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GK-ELW-------NLRMHK 250 (435)
T ss_dssp --------------------------SSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SC-BCC-------CSBCCS
T ss_pred --------------------------CCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cc-eeE-------EEeccc
Confidence 2345567899999999999999 99999999997 33 222 367899
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..|.+++|+|++..+|++|+.|+.|++||+++.+.. ..+ ....+|...|++++|+|+|++|++++.
T Consensus 251 ~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~----~~~----------~~~~~h~~~v~~~~~spdg~~l~s~~~ 316 (435)
T 4e54_B 251 KKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK----ASF----------LYSLPHRHPVNAACFSPDGARLLTTDQ 316 (435)
T ss_dssp SCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS----SCC----------SBCCBCSSCEEECCBCTTSSEEEEEES
T ss_pred ceEEeeeecCCCceEEEEecCcceeeEEeccccccc----ceE----------EEeeeccccccceeECCCCCeeEEEcC
Confidence 999999999998568999999999999999886432 111 112467889999999999999999875
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe------------CCCcEEEEecC
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS------------YSNLLRIFSHG 414 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~------------~dg~i~iw~~~ 414 (457)
+.|++||+.. +.....+..|....... .....+.|+|++.++++++ .++.|++||..
T Consensus 317 D~~i~iwd~~~-~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~ 386 (435)
T 4e54_B 317 KSEIRVYSASQ-WDCPLGLIPHPHRHFQH---------LTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGN 386 (435)
T ss_dssp SSCEEEEESSS-SSSEEEECCCCCCCCSS---------SCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSS
T ss_pred CCEEEEEECCC-CccceEEeccccccccc---------ceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECC
Confidence 9999999986 66666666655432100 0113566777777666654 34679999999
Q ss_pred CCCceeeEEecCCCcceee-eeccCCcceeccc
Q 012721 415 VGSAGGITVEAGKNENRKP-ILQAAPRARRSSL 446 (457)
Q Consensus 415 ~~~~~~~~~~~~~~~v~~~-~~~p~~~~~~~~~ 446 (457)
+++.......+|...|.++ +|+|++...++|-
T Consensus 387 ~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~ 419 (435)
T 4e54_B 387 SGKMMCQLYDPESSGISSLNEFNPMGDTLASAM 419 (435)
T ss_dssp SCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC
T ss_pred CCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc
Confidence 9944444456888999988 6999999888753
No 29
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=9.9e-38 Score=283.88 Aligned_cols=258 Identities=15% Similarity=0.204 Sum_probs=199.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ..+..+.+|.
T Consensus 10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~-------------------------~~~~~l~gH~------- 57 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ-------------------------ILIADLRGHE------- 57 (316)
T ss_dssp ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE-------------------------EEEEEEECCS-------
T ss_pred ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc-------------------------EEEEEEcCCC-------
Confidence 35999999999999999999999999999999987642 1456788999
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|.+++|.+..++++|++++.|++|++||+.++.......
T Consensus 58 -----~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~---------------------------------- 98 (316)
T 3bg1_A 58 -----GPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHE---------------------------------- 98 (316)
T ss_dssp -----SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEE----------------------------------
T ss_pred -----ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEE----------------------------------
Confidence 88999999532258899999999999999998764322111
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+ .+|...|.+++|+|+ +.+|++| .|+.|++||++..... ... ..+.+
T Consensus 99 ------------------------~-~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~-~~~----~~~~~ 148 (316)
T 3bg1_A 99 ------------------------H-AGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW-EVK----KINNA 148 (316)
T ss_dssp ------------------------E-CCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE-EEC----CBTTS
T ss_pred ------------------------c-cCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc-cee----eeecc
Confidence 1 578999999999997 7899999 9999999999843221 111 23578
Q ss_pred CCCceEEEEEecCC----------------ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 266 LTEVITSAEFHPIY----------------CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 266 ~~~~i~~v~~~p~~----------------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
|...+.+++|+|+. ..+|++|+.|++|++||++..... .. ...+.+|...
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~----~~----------~~~l~~h~~~ 214 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW----KE----------EQKLEAHSDW 214 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE----EE----------EECCBCCSSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc----ce----------eeecccCCCc
Confidence 99999999999972 168999999999999999754210 00 1124568889
Q ss_pred eEEEEEccCC----CeEEEEec-CcEEEEeccCCC---CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 330 ISDIKFANDG----QHLLSRDY-MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 330 v~~~~~s~~g----~~l~s~~~-~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
|.+++|+|++ ++|++++. ++|++||++... .....+..|...+ ++++|+|++++|++
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v---------------~~v~~sp~g~~las 279 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVV---------------WHVSWSITANILAV 279 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCE---------------EEEEECTTTCCEEE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcE---------------EEEEEcCCCCEEEE
Confidence 9999999986 78998874 999999987411 1223445565543 69999999999999
Q ss_pred EeCCCcEEEEecCCC
Q 012721 402 GSYSNLLRIFSHGVG 416 (457)
Q Consensus 402 ~~~dg~i~iw~~~~~ 416 (457)
++.|++|++|+....
T Consensus 280 ~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 280 SGGDNKVTLWKESVD 294 (316)
T ss_dssp EESSSCEEEEEECTT
T ss_pred EcCCCeEEEEEECCC
Confidence 999999999998643
No 30
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-36 Score=280.94 Aligned_cols=294 Identities=12% Similarity=0.132 Sum_probs=238.3
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|.+.|++++|+|++++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~------ 74 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE---------------------------RLGTLDGHT------ 74 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCC---------------------------EEEEECCCS------
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch---------------------------hhhhhhhcC------
Confidence 34599999999999999999999999999999988765 456788888
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++| ++++++|++++.|+.|++||+.+++...... ....+.++.|.+....++.....
T Consensus 75 ------~~v~~~~~--~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~-------- 136 (369)
T 3zwl_B 75 ------GTIWSIDV--DCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDN-------- 136 (369)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECC--------
T ss_pred ------CcEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCC--------
Confidence 88999999 7899999999999999999999988776665 55667888887654433332220
Q ss_pred CccccccceEEEeccCccccc--------cceeeccCCCC--CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeee
Q 012721 188 LEWTENMATKIANVGNSVHAR--------CQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIV 256 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~h~~--~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (457)
.....+.+++|++....... ....+ ..|.. .+.+++|+|++++|+++ .|+.|++||++........
T Consensus 137 -~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~- 213 (369)
T 3zwl_B 137 -VMKNPGSINIYEIERDSATHELTKVSEEPIHKI-ITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDS- 213 (369)
T ss_dssp -BTTBCCEEEEEEEEECTTTCCEEEECSSCSEEE-ECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEE-
T ss_pred -ccCCCCEEEEEEecCCccceeecccccceeeec-cCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEE-
Confidence 01123689999987643221 22222 44555 89999999999999999 9999999999943555544
Q ss_pred ecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
+..|...|.+++|+|++ .+|++++.||.|++||+++++.. ..+. +...+..++|+
T Consensus 214 ------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~~~--------------~~~~~~~~~~~ 268 (369)
T 3zwl_B 214 ------IDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQVL----KKYE--------------TDCPLNTAVIT 268 (369)
T ss_dssp ------EECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEEE--------------CSSCEEEEEEC
T ss_pred ------EecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCcee----eeec--------------CCCCceeEEec
Confidence 56788999999999999 99999999999999999987543 2222 34689999999
Q ss_pred cCCCeEEEEec-C--------------cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 337 NDGQHLLSRDY-M--------------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 337 ~~g~~l~s~~~-~--------------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
|+++++++++. + .+++||+.. ++.+..+.+|...+ .+++|+|++++|++
T Consensus 269 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 269 PLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF-EEEIGRVQGHFGPL---------------NTVAISPQGTSYAS 332 (369)
T ss_dssp SSSSEEEEEECCC-------------CEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTSSEEEE
T ss_pred CCCceEEEeecCCCceEEEEecCCCcceeEEEecCC-CcchhheecccCcE---------------EEEEECCCCCEEEE
Confidence 99999998764 5 899999986 78888888888765 68999999999999
Q ss_pred EeCCCcEEEEecCCC
Q 012721 402 GSYSNLLRIFSHGVG 416 (457)
Q Consensus 402 ~~~dg~i~iw~~~~~ 416 (457)
++.||.|++|++.++
T Consensus 333 ~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 333 GGEDGFIRLHHFEKS 347 (369)
T ss_dssp EETTSEEEEEEECHH
T ss_pred EcCCCeEEEEECccc
Confidence 999999999999876
No 31
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-37 Score=287.84 Aligned_cols=294 Identities=14% Similarity=0.146 Sum_probs=230.8
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|.++|++++|+|++++||+|+.|+.|+||++.+++. +.+..+.+|.
T Consensus 7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~-------------------------~~~~~~~~h~--------- 52 (372)
T 1k8k_C 7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW-------------------------VQVHELKEHN--------- 52 (372)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-------------------------EEEEEEECCS---------
T ss_pred cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-------------------------EeeeeecCCC---------
Confidence 889999999999999999999999999999987642 2456778888
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEe-ecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.+++| ++++++|++++.|+.|++||+.+++...... ......+.+++|.+....++...
T Consensus 53 ---~~v~~~~~--~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------ 115 (372)
T 1k8k_C 53 ---GQVTGVDW--APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS------------ 115 (372)
T ss_dssp ---SCEEEEEE--ETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE------------
T ss_pred ---CcccEEEE--eCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe------------
Confidence 88999999 6799999999999999999999887655544 33455677888876443333222
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC-----------------Ccc
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-----------------SDQ 251 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~-----------------~~~ 251 (457)
.++.+++|+++..........+..+|...|.+++|+|++++|+++ .|+.|++||++. .+.
T Consensus 116 --~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 193 (372)
T 1k8k_C 116 --GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE 193 (372)
T ss_dssp --TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred --CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhh
Confidence 256899999987654444455547889999999999999999999 999999999641 223
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
.... +.+|...|.+++|+|++ .+|++++.||.|++||+++++.. .. +..|...|.
T Consensus 194 ~~~~-------~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~~~~v~ 248 (372)
T 1k8k_C 194 LMFE-------SSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKMAV----AT-------------LASETLPLL 248 (372)
T ss_dssp EEEE-------CCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTTEE----EE-------------EECSSCCEE
T ss_pred heEe-------cCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCcee----EE-------------EccCCCCeE
Confidence 3332 56789999999999999 99999999999999999987533 22 234567899
Q ss_pred EEEEccCCCeEEEEecCcEEEEeccCC-CC--ce------------------------------------eEe-eecccc
Q 012721 332 DIKFANDGQHLLSRDYMNLKLWDIRMD-ST--PV------------------------------------ATF-KIHEHL 371 (457)
Q Consensus 332 ~~~~s~~g~~l~s~~~~~i~~wd~~~~-~~--~~------------------------------------~~~-~~~~~~ 371 (457)
+++|+|++++|+++.++.|++|+++.. ++ .+ ..+ .+|...
T Consensus 249 ~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 328 (372)
T 1k8k_C 249 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 328 (372)
T ss_dssp EEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSC
T ss_pred EEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCC
Confidence 999999999999997899999999741 11 11 111 133333
Q ss_pred ccccccccCCCCccccceEEEc-CCC---cEEEEEeCCCcEEEEecCCCC
Q 012721 372 RPKLCDLYNNDSIFDKFECSVS-GDG---LHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s-~d~---~~l~s~~~dg~i~iw~~~~~~ 417 (457)
|++++|. ++| .+|++|+.||.|++|++.+++
T Consensus 329 ---------------v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 329 ---------------VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ---------------EEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ---------------cceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 3789866 677 999999999999999998763
No 32
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=4.4e-37 Score=284.29 Aligned_cols=253 Identities=18% Similarity=0.239 Sum_probs=194.1
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..+|.+.|.+++|+|++.+| +++.||+|+|||+.+++.. ........+|.
T Consensus 90 ~~~~~~~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-----------------------~~~~~~~~~h~------ 139 (357)
T 4g56_B 90 GVQTEAGVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-----------------------LVNKFAKYEHD------ 139 (357)
T ss_dssp EEECSSCEEEEEEETTTEEE-EEETTSCEEEC-------------------------------CCCCEEECCCS------
T ss_pred cCCCCCCEEEEEEcCCCCEE-EEECCCEEEEeecccccee-----------------------EEEeeccCCCC------
Confidence 34688999999999998655 5678999999999877642 01112345677
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++| +|++++|++++.|+.|++||+.+++....+
T Consensus 140 ------~~V~~v~~--spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---------------------------------- 177 (357)
T 4g56_B 140 ------DIVKTLSV--FSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---------------------------------- 177 (357)
T ss_dssp ------SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTTEEEEEE----------------------------------
T ss_pred ------CCEEEEEE--CCCCCEEEEEeCCCeEEEEECCCCcEEEEE----------------------------------
Confidence 88999999 789999999999999999999887654332
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
.+|...|++++|+|++. +++++ .|+.|++||++ .++....+ ....
T Consensus 178 ---------------------------~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~-~~~~~~~~-----~~~~ 224 (357)
T 4g56_B 178 ---------------------------NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR-KPKPATRI-----DFCA 224 (357)
T ss_dssp ---------------------------CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT-SSSCBCBC-----CCTT
T ss_pred ---------------------------cCCCCCEEEEEEccCCCceeeeeccCCceEEEECC-CCceeeee-----eecc
Confidence 57899999999999875 67777 99999999998 44443321 2456
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC-CeEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLS 344 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s 344 (457)
|...+.+++|+|++..+|++|+.|+.|++||+++++.. .. +.+|...|++++|+|++ ++|++
T Consensus 225 ~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~-------------~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 225 SDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA----QT-------------SAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp CCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC----EE-------------ECCCSSCEEEEEECSSSSCCEEE
T ss_pred ccccccchhhhhcccceEEEeecccceeEEECCCCcEe----EE-------------EeccceeEEEEEEcCCCCCEEEE
Confidence 77889999999987589999999999999999886432 22 34567899999999987 57888
Q ss_pred Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCce
Q 012721 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAG 419 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~ 419 (457)
++. ++|+|||+++ ++++.. .+|...+ ++++|+| |+.+|++++.||+|++|++.+..+.
T Consensus 288 gs~D~~i~iwd~~~-~~~~~~-~~H~~~V---------------~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~ 347 (357)
T 4g56_B 288 ISEDCTVAVLDADF-SEVFRD-LSHRDFV---------------TGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRT 347 (357)
T ss_dssp EETTSCEEEECTTS-CEEEEE-CCCSSCE---------------EEEEECSSSTTEEEEEETTSCEEEEECC-----
T ss_pred EeCCCEEEEEECCC-CcEeEE-CCCCCCE---------------EEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc
Confidence 875 9999999985 565544 4677665 7999998 7999999999999999999875333
No 33
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-36 Score=285.41 Aligned_cols=259 Identities=16% Similarity=0.249 Sum_probs=204.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...|++++|+|+|++||+|+.|++|+|||+.+++ .+..+.+|.
T Consensus 123 ~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~---------------------------~~~~~~~h~---------- 165 (393)
T 1erj_A 123 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRK---------------------------IVMILQGHE---------- 165 (393)
T ss_dssp CCBEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS----------
T ss_pred ceeEEEEEECCCCCEEEEEcCCCeEEEEECCCCc---------------------------EEEEEccCC----------
Confidence 3459999999999999999999999999998665 456788998
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..|.+++| ++++.+|++++.|++|++||+.+++.....
T Consensus 166 --~~v~~~~~--~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-------------------------------------- 203 (393)
T 1erj_A 166 --QDIYSLDY--FPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-------------------------------------- 203 (393)
T ss_dssp --SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE--------------------------------------
T ss_pred --CCEEEEEE--cCCCCEEEEecCCCcEEEEECCCCeeEEEE--------------------------------------
Confidence 88999999 789999999999999999999987654332
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
.+...+.+++|+| ++++|++| .|+.|++||++ .+.....+........+|...
T Consensus 204 ------------------------~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-~~~~~~~~~~~~~~~~~h~~~ 258 (393)
T 1erj_A 204 ------------------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDS 258 (393)
T ss_dssp ------------------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETT-TCCEEEEEC------CCCSSC
T ss_pred ------------------------EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECC-CCcEEEeecccccCCCCCCCC
Confidence 2445789999999 89999999 99999999998 555554433222234679999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
|.+++|+|++ .+|++|+.||.|++||++...... .... .........+.+|...|.+++|+|++++|++|+. +
T Consensus 259 v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~----~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~ 332 (393)
T 1erj_A 259 VYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKS----DSKT-PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 332 (393)
T ss_dssp EEEEEECTTS-SEEEEEETTSEEEEEEC--------------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTS
T ss_pred EEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcc----cccC-CCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCC
Confidence 9999999999 999999999999999998754221 0000 0111122346788999999999999999999875 9
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC------CCcEEEEEeCCCcEEEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.|++||+++ ++++..+.+|...+ .+++|++ ++.+|++|+.||+|+||++...
T Consensus 333 ~v~iwd~~~-~~~~~~l~~h~~~v---------------~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 333 GVLFWDKKS-GNPLLMLQGHRNSV---------------ISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EEEEEETTT-CCEEEEEECCSSCE---------------EEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred eEEEEECCC-CeEEEEECCCCCCE---------------EEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 999999986 78888999998765 5788775 7899999999999999998654
No 34
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=3.8e-36 Score=277.76 Aligned_cols=247 Identities=22% Similarity=0.353 Sum_probs=206.0
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|.+++|+|+|.+||+|+.|+.+++|++...... ........+.+|.
T Consensus 104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~---------------------~~~~~~~~~~~h~-------- 154 (354)
T 2pbi_B 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE---------------------NMAAKKKSVAMHT-------- 154 (354)
T ss_dssp CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC---------------------CSGGGCEEEEECS--------
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc---------------------cccccceeeeccC--------
Confidence 37788999999999999999999999999998754321 0112344567787
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.+++| ++++..|++++.|++|++||+.+++....+
T Consensus 155 ----~~v~~~~~--~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~------------------------------------ 192 (354)
T 2pbi_B 155 ----NYLSACSF--TNSDMQILTASGDGTCALWDVESGQLLQSF------------------------------------ 192 (354)
T ss_dssp ----SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CcEEEEEE--eCCCCEEEEEeCCCcEEEEeCCCCeEEEEE------------------------------------
Confidence 88999999 688899999999999999999987654332
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+|...|.+++|+| ++++|++| .|+.|++||++ .+++... +.+|
T Consensus 193 -------------------------~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~-~~~~~~~-------~~~h 239 (354)
T 2pbi_B 193 -------------------------HGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR-SGQCVQA-------FETH 239 (354)
T ss_dssp -------------------------ECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT-TCCEEEE-------ECCC
T ss_pred -------------------------cCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC-CCcEEEE-------ecCC
Confidence 57888999999987 57899999 99999999999 5666554 5789
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|.+++|+|++ .+|++++.|++|++||++.++.. ..+.. ..+...+.+++|+|+|++|++|+
T Consensus 240 ~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~~~----~~~~~-----------~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 240 ESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADREV----AIYSK-----------ESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EEECC-----------TTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEE----EEEcC-----------CCcccceeEEEEeCCCCEEEEEE
Confidence 9999999999999 99999999999999999987533 22221 11234689999999999999987
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
. +.|++||+.. ++.+..+.+|...+ ++++|+||+++|++|+.|++|+||+
T Consensus 304 ~d~~i~vwd~~~-~~~~~~l~~h~~~v---------------~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLK-GSRVSILFGHENRV---------------STLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTT-CSEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCC-CceEEEEECCCCcE---------------EEEEECCCCCEEEEEcCCCCEEecC
Confidence 5 9999999975 78888888898765 6999999999999999999999996
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.7e-35 Score=269.38 Aligned_cols=272 Identities=14% Similarity=0.195 Sum_probs=222.9
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec--cCCccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEFDY 106 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~ 106 (457)
..|.+.|++++|+|++++|++++ ||.|++|++.+++.. ..+..+. +|.
T Consensus 48 ~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~------------------------~~~~~~~~~~~~----- 97 (337)
T 1gxr_A 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK------------------------SPVSQLDCLNRD----- 97 (337)
T ss_dssp ECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC------------------------SCSEEEECSCTT-----
T ss_pred ccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce------------------------eeeecccccCCC-----
Confidence 46999999999999999999999 999999999876532 1122222 565
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++| ++++++|++++.|+.|++||+.+++......
T Consensus 98 -------~~v~~~~~--~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------------------------- 136 (337)
T 1gxr_A 98 -------NYIRSCKL--LPDGCTLIVGGEASTLSIWDLAAPTPRIKAE-------------------------------- 136 (337)
T ss_dssp -------SBEEEEEE--CTTSSEEEEEESSSEEEEEECCCC--EEEEE--------------------------------
T ss_pred -------CcEEEEEE--cCCCCEEEEEcCCCcEEEEECCCCCcceeee--------------------------------
Confidence 88999999 7899999999999999999998875322211
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+..|...|.+++|+|++++|+++ .|+.|++||++ .++.... +..
T Consensus 137 ---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~-~~~~~~~-------~~~ 181 (337)
T 1gxr_A 137 ---------------------------LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLH-NQTLVRQ-------FQG 181 (337)
T ss_dssp ---------------------------EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TTEEEEE-------ECC
T ss_pred ---------------------------cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC-CCceeee-------eec
Confidence 15688899999999999999999 99999999998 5555544 567
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|...+.+++|+|++ ++|++++.||.|++||+++++.. ..+ .|...+.+++|+|++++|+++
T Consensus 182 ~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~----~~~--------------~~~~~v~~~~~s~~~~~l~~~ 242 (337)
T 1gxr_A 182 HTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGRQL----QQH--------------DFTSQIFSLGYCPTGEWLAVG 242 (337)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEE----EEE--------------ECSSCEEEEEECTTSSEEEEE
T ss_pred ccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCceE----eee--------------cCCCceEEEEECCCCCEEEEE
Confidence 88999999999999 99999999999999999987543 111 234679999999999999998
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+. +.|++||++. .+ ...+..|...+ .+++|+|++++|++++.||.|++|++.+++ .. ...
T Consensus 243 ~~~~~i~~~~~~~-~~-~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~-~~-~~~ 303 (337)
T 1gxr_A 243 MESSNVEVLHVNK-PD-KYQLHLHESCV---------------LSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SI-FQS 303 (337)
T ss_dssp ETTSCEEEEETTS-SC-EEEECCCSSCE---------------EEEEECTTSSEEEEEETTSEEEEEETTTCC-EE-EEE
T ss_pred cCCCcEEEEECCC-CC-eEEEcCCccce---------------eEEEECCCCCEEEEecCCCcEEEEECCCCe-EE-EEe
Confidence 75 9999999975 33 34556666554 689999999999999999999999999983 33 445
Q ss_pred cCCCcceeeeeccCCcceec
Q 012721 425 AGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 425 ~~~~~v~~~~~~p~~~~~~~ 444 (457)
.|..++.++.|+|++....+
T Consensus 304 ~~~~~v~~~~~s~~~~~l~~ 323 (337)
T 1gxr_A 304 KESSSVLSCDISVDDKYIVT 323 (337)
T ss_dssp ECSSCEEEEEECTTSCEEEE
T ss_pred cCCCcEEEEEECCCCCEEEE
Confidence 68999999999999987766
No 36
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.8e-36 Score=279.71 Aligned_cols=289 Identities=16% Similarity=0.155 Sum_probs=221.4
Q ss_pred cccCCceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|.+.|++++|+|++ ++||+|+.||.|+|||+.+++.. ....+.+|.
T Consensus 70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------------------------~~~~~~~h~------ 118 (383)
T 3ei3_B 70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKT-------------------------SFIQGMGPG------ 118 (383)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCE-------------------------EEECCCSTT------
T ss_pred cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccc-------------------------eeeecCCcC------
Confidence 3589999999999999 99999999999999999876642 222334677
Q ss_pred ccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 108 KSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..|.+++| ++ ++.+|++++.|+.|++||+.+........
T Consensus 119 ------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------------------------- 158 (383)
T 3ei3_B 119 ------DAITGMKF--NQFNTNQLFVSSIRGATTLRDFSGSVIQVFAK-------------------------------- 158 (383)
T ss_dssp ------CBEEEEEE--ETTEEEEEEEEETTTEEEEEETTSCEEEEEEC--------------------------------
T ss_pred ------CceeEEEe--CCCCCCEEEEEeCCCEEEEEECCCCceEEEec--------------------------------
Confidence 88999999 56 67899999999999999998643322211
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
...|...|.+++|+|++++|+++ .|+.|++||++ +..... +.+
T Consensus 159 ---------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~-------~~~ 202 (383)
T 3ei3_B 159 ---------------------------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD--GHEIFK-------EKL 202 (383)
T ss_dssp ---------------------------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT--SCEEEE-------EEC
T ss_pred ---------------------------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC--CCEEEE-------ecc
Confidence 03566889999999999999999 99999999996 334433 567
Q ss_pred CCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEE
Q 012721 266 LTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLL 343 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~ 343 (457)
|...|.+++|+|++ . +|++++.|+.|++||+++.+... .... ..+|...|.+++|+| ++++|+
T Consensus 203 h~~~v~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~-----------~~~~~~~v~~~~~s~~~~~~l~ 267 (383)
T 3ei3_B 203 HKAKVTHAEFNPRC-DWLMATSSVDATVKLWDLRNIKDKN---SYIA-----------EMPHEKPVNAAYFNPTDSTKLL 267 (383)
T ss_dssp SSSCEEEEEECSSC-TTEEEEEETTSEEEEEEGGGCCSTT---CEEE-----------EEECSSCEEEEEECTTTSCEEE
T ss_pred CCCcEEEEEECCCC-CCEEEEEeCCCEEEEEeCCCCCccc---ceEE-----------EecCCCceEEEEEcCCCCCEEE
Confidence 99999999999999 6 99999999999999999843211 1111 124678999999999 999999
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccccccc----cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC----DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
+++. +.|++||++. ++....+..|........ ..+.++ ..+..++|+||+++ +++.|+.|++||+.++ +
T Consensus 268 ~~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~-~ 341 (383)
T 3ei3_B 268 TTDQRNEIRVYSSYD-WSKPDQIIIHPHRQFQHLTPIKATWHPM--YDLIVAGRYPDDQL--LLNDKRTIDIYDANSG-G 341 (383)
T ss_dssp EEESSSEEEEEETTB-TTSCSEEEECCBCCCTTSCCCCCEECSS--SSEEEEECBCCTTT--CTTCCCCEEEEETTTC-C
T ss_pred EEcCCCcEEEEECCC-CccccccccccccccccccceEEeccCC--CCceEEEecCCccc--ccCCCCeEEEEecCCC-c
Confidence 8875 9999999986 666667766643221000 000000 01134666777766 7789999999999998 6
Q ss_pred eeeEEec--CCCcceeeeeccCCcceecc
Q 012721 419 GGITVEA--GKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 419 ~~~~~~~--~~~~v~~~~~~p~~~~~~~~ 445 (457)
....+.+ |...+..++|+|++...++|
T Consensus 342 ~~~~l~~~~~~~~~~~~~~s~~g~~l~s~ 370 (383)
T 3ei3_B 342 LVHQLRDPNAAGIISLNKFSPTGDVLASG 370 (383)
T ss_dssp EEEEECBTTBCSCCCEEEECTTSSEEEEE
T ss_pred eeeeecCCCCCceEEEEEEecCccEEEEe
Confidence 6777876 56778888999999988885
No 37
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.7e-36 Score=279.95 Aligned_cols=306 Identities=11% Similarity=0.097 Sum_probs=228.8
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|++++|+| ++||+|+.||.|+||++.+++.. .....+..+.+|.
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~---------------------~~~~~~~~~~~h~-------- 62 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE---------------------NPKDKSYSHFVHK-------- 62 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC---------------------CGGGGEEEEECCT--------
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc---------------------cCCCcceEEecCC--------
Confidence 4999999999998 89999999999999999877621 1233556777888
Q ss_pred ccccCcEEEEEEEecCC----C---CEEEEeeCCCeEEEEEecccce-----eEEEeecC----CCceeeeeec----cc
Q 012721 110 LEIEEKINRVRWCAAPN----G---SMFILSTNDKTIKLWKVRDQKV-----KKIKEMDH----FPFVSSENTL----LA 169 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~----~---~~l~s~s~d~~i~vw~~~~~~~-----~~~~~~~~----~~~~~~~~~~----~~ 169 (457)
..|.+++|. ++ + .+|++++.|+.|++|++.+++. ........ ...+.+++|. +.
T Consensus 63 ----~~v~~~~~~--~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 136 (397)
T 1sq9_A 63 ----SGLHHVDVL--QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRL 136 (397)
T ss_dssp ----TCEEEEEEE--EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC---
T ss_pred ----CcEEEEEEe--cccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCC
Confidence 889999995 56 7 8999999999999999998874 33333322 3668888888 44
Q ss_pred ccc-ccccCCCCCceeccCCccccccceEEEeccCccc---cccce-----eec------cCCCCCeeEEEeCCCCCEEE
Q 012721 170 EKN-FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH---ARCQK-----VYP------HAHDFNINSISNNSDCETFV 234 (457)
Q Consensus 170 ~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~-----~~~------~~h~~~v~~~~~~~~~~~l~ 234 (457)
... ++... .++.+++||+..... .+++. .+. ..|...|.+++|+|++ +|+
T Consensus 137 ~~~~l~~~~--------------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~ 201 (397)
T 1sq9_A 137 LSHRLVATD--------------VKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA 201 (397)
T ss_dssp -CEEEEEEE--------------TTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEE
T ss_pred CceEEEEEe--------------CCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEE
Confidence 333 33222 256899999986110 12222 331 3588899999999999 999
Q ss_pred Ee-CCCeEEEEEcCCCcceeeeeecCCCcccC---C---CCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeec
Q 012721 235 SA-DDLRINLWNLEISDQCFNIVDMKPSNMDD---L---TEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCD 304 (457)
Q Consensus 235 ~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~ 304 (457)
++ .|+.|++||++ ..+.... +.. | ...|.+++|+|++ .+|++++.| |.|++||+++++..
T Consensus 202 ~~~~dg~i~i~d~~-~~~~~~~-------~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~- 271 (397)
T 1sq9_A 202 TGFNNGTVQISELS-TLRPLYN-------FESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI- 271 (397)
T ss_dssp EECTTSEEEEEETT-TTEEEEE-------EECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE-
T ss_pred EEeCCCcEEEEECC-CCceeEE-------EeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCccc-
Confidence 99 99999999998 4555544 345 7 8999999999999 999999999 99999999987543
Q ss_pred cccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee------ec---------
Q 012721 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK------IH--------- 368 (457)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~------~~--------- 368 (457)
..+...............|...|.+++|+|++++|++++. +.|++||++. ++.+..+. .|
T Consensus 272 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 347 (397)
T 1sq9_A 272 ---GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT-KERITTLNMHCDDIEIEEDILAVDE 347 (397)
T ss_dssp ---EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT-TEEEEEEECCGGGCSSGGGCCCBCT
T ss_pred ---ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCC-CceeEEEecccCcccchhhhhcccc
Confidence 2222100000000001127789999999999999999875 9999999986 78888887 55
Q ss_pred ------cccccccccccCCCCccccceEEEcCCC----------cEEEEEeCCCcEEEEecCCC
Q 012721 369 ------EHLRPKLCDLYNNDSIFDKFECSVSGDG----------LHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 369 ------~~~~~~~~~~~~~~~~~~v~~~~~s~d~----------~~l~s~~~dg~i~iw~~~~~ 416 (457)
... |++++|+|++ ++|++++.||.|++|++++|
T Consensus 348 ~~~~~~~~~---------------v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 348 HGDSLAEPG---------------VFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp TSCBCSSCC---------------EEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred ccccccCCc---------------eeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 333 3799999998 79999999999999999887
No 38
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6e-36 Score=283.70 Aligned_cols=327 Identities=14% Similarity=0.166 Sum_probs=240.5
Q ss_pred ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEe----cCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET----VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (457)
...|.+.|++++|+|+++ +||+|+.||.|+||++ .+++.. ..+ .+...+...+.+|.
T Consensus 41 ~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~----------~~~~~~~~~~~~~~- 102 (425)
T 1r5m_A 41 EIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKY-------WKL----------TIIAELRHPFALSA- 102 (425)
T ss_dssp EEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------C-------EEE----------EEEEEEECCCCCC--
T ss_pred eeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccc-------ccc----------cccccccccccccc-
Confidence 344779999999999999 9999999999999999 665520 000 00011111222220
Q ss_pred cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
....|.+.|.+++| ++++++|++++.|+.|++|+ .+++....+. .....+.++.|.+....++...
T Consensus 103 -----~~~~~~~~v~~~~~--s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~----- 168 (425)
T 1r5m_A 103 -----SSGKTTNQVTCLAW--SHDGNSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMD----- 168 (425)
T ss_dssp ----------CBCEEEEEE--CTTSSEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEE-----
T ss_pred -----cccCCCCceEEEEE--cCCCCEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEe-----
Confidence 00112278999999 78999999999999999999 4454444433 2345577888876444333322
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCC---------------eeEEEeCCCCCEEEEe-CCCeEEEEEc
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFN---------------INSISNNSDCETFVSA-DDLRINLWNL 246 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~~l~~~-~d~~i~iwd~ 246 (457)
.++.+++|++... +.+..+ ..+... +.+++|+|++. ++++ .|+.|++||+
T Consensus 169 ---------~d~~i~iwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~ 234 (425)
T 1r5m_A 169 ---------VENVTILWNVISG---TVMQHF-ELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQI 234 (425)
T ss_dssp ---------TTCCEEEEETTTT---EEEEEE-CCC---------------CCCBSCCEEEETTE-EEEECGGGCEEEEET
T ss_pred ---------cCCeEEEEECCCC---cEEEEe-eccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEc
Confidence 2568999999653 333333 444444 89999998865 6666 9999999999
Q ss_pred CCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (457)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (457)
+ .+..... +..|...|.+++|+|++ .+|++++.||.|++||+++++.. .. +.+|
T Consensus 235 ~-~~~~~~~-------~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~ 288 (425)
T 1r5m_A 235 T-EKTPTGK-------LIGHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGNSQ----NC-------------FYGH 288 (425)
T ss_dssp T-CSSCSEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBSCS----EE-------------ECCC
T ss_pred C-CCceeee-------eccCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCccc----eE-------------ecCC
Confidence 8 4444433 56788999999999999 99999999999999999886432 22 2346
Q ss_pred ccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC
Q 012721 327 IASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS 405 (457)
Q Consensus 327 ~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d 405 (457)
...|.+++|+|++ ++++++ ++.|++||++. ++.+..+..|...+ .+++|+|++++|++++.|
T Consensus 289 ~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 289 SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ-NTLLALSIVDGVPI---------------FAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp SSCEEEEEEETTT-EEEEEETTSEEEEEETTT-TEEEEEEECTTCCE---------------EEEEECTTSSEEEEEETT
T ss_pred CccEEEEEECCCC-EEEEEeCCCcEEEEECCC-CcEeEecccCCccE---------------EEEEEcCCCCEEEEEECC
Confidence 7889999999999 777776 49999999986 78888888777654 689999999999999999
Q ss_pred CcEEEEecCCCCc--------------------eeeEEecCCC--cceeeeeccCCcceec
Q 012721 406 NLLRIFSHGVGSA--------------------GGITVEAGKN--ENRKPILQAAPRARRS 444 (457)
Q Consensus 406 g~i~iw~~~~~~~--------------------~~~~~~~~~~--~v~~~~~~p~~~~~~~ 444 (457)
|.|++||+.++ . ....+.+|.. ++.+++|+|++...++
T Consensus 352 g~i~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 411 (425)
T 1r5m_A 352 GQVNVYDLKKL-NSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISV 411 (425)
T ss_dssp SCEEEEECHHH-HC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEE
T ss_pred CeEEEEECCCC-ccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEE
Confidence 99999999987 4 6788899977 9999999999987765
No 39
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.1e-35 Score=277.69 Aligned_cols=294 Identities=15% Similarity=0.183 Sum_probs=224.7
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAE 170 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
..+..++.+|. +.|++++| +|++.+|++|+.|++|++||+.+++....+..+. ..+.+++|.+..
T Consensus 56 ~~~~~~l~gH~------------~~V~~~~~--sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~-~~v~~~~~s~~g 120 (380)
T 3iz6_a 56 LVCCRTLQGHS------------GKVYSLDW--TPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHC-PWVMECAFAPNG 120 (380)
T ss_dssp CEEEEEECCCS------------SCEEEEEE--CTTSSCEEEEETTSEEEEEETTTTEEEEEEECCC-TTCCCCEECTTS
T ss_pred eEEeecccccc------------cEEEEEEE--cCCCCEEEEEeCCCeEEEEECCCCccceEEecCC-CCEEEEEECCCC
Confidence 34667899999 88999999 7899999999999999999999887766655432 346666666543
Q ss_pred ccccccCCCCCceeccCCccccccceEEEeccCccc----cccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEE
Q 012721 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVH----ARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLW 244 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iw 244 (457)
..++... .++.+++|++..... ....+.+ .+|...|.++.|.|+ +..|++| .|++|++|
T Consensus 121 ~~las~~--------------~d~~v~iw~~~~~~~~~~~~~~~~~~-~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~w 185 (380)
T 3iz6_a 121 QSVACGG--------------LDSACSIFNLSSQADRDGNMPVSRVL-TGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185 (380)
T ss_dssp SEEEECC--------------SSSCCEEEECCCCSSCCCSSTTCCBC-CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEE
T ss_pred CEEEEee--------------CCCcEEEEECCCCccccCCccceeec-cCCCcceEEEEEecCCCCEEEEECCCCcEEEE
Confidence 3332222 256899999875321 1223333 799999999999996 4568888 99999999
Q ss_pred EcCCCcceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (457)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
|++ .++.+..+... ...+|...|.+++|++ ++ ++|++|+.|++|++||++..... ...+
T Consensus 186 d~~-~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~-~~l~sgs~D~~v~~wd~~~~~~~----------------~~~~ 245 (380)
T 3iz6_a 186 DVT-TGQRISIFGSE--FPSGHTADVLSLSINSLNA-NMFISGSCDTTVRLWDLRITSRA----------------VRTY 245 (380)
T ss_dssp CTT-TCCEEEEECCC--SSSSCCSCEEEEEECSSSC-CEEEEEETTSCEEEEETTTTCCC----------------CEEE
T ss_pred EcC-CCcEEEEeecc--cCCCCccCeEEEEeecCCC-CEEEEEECCCeEEEEECCCCCcc----------------eEEE
Confidence 999 55555543211 1367999999999988 55 99999999999999999853211 1124
Q ss_pred eccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 324 TEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 324 ~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
.+|...|.+++|+|++++|+++++ ++|++||+++ ++.+..+..+..... .....+++++|+|+|++|++|
T Consensus 246 ~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~-~~~~~~~~~~~~~~~--------~~~~~v~~~~~s~~g~~l~~g 316 (380)
T 3iz6_a 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT-GHQLQVYNREPDRND--------NELPIVTSVAFSISGRLLFAG 316 (380)
T ss_dssp CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT-TEEEEEECCCCSSSC--------CSSCSCSEEEECSSSSEEEEE
T ss_pred CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC-CcEEEEecccccccc--------cccCceEEEEECCCCCEEEEE
Confidence 567889999999999999999875 9999999986 677776655432210 011123789999999999999
Q ss_pred eCCCcEEEEecCCCCceeeEE----ecCCCcceeeeeccCCcceec
Q 012721 403 SYSNLLRIFSHGVGSAGGITV----EAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 403 ~~dg~i~iw~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.||.|++||+.++ +....+ .+|.+.|.+++|+|++...++
T Consensus 317 ~~dg~i~vwd~~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 361 (380)
T 3iz6_a 317 YSNGDCYVWDTLLA-EMVLNLGTLQNSHEGRISCLGLSSDGSALCT 361 (380)
T ss_dssp CTTSCEEEEETTTC-CEEEEECCSCSSCCCCCCEEEECSSSSEEEE
T ss_pred ECCCCEEEEECCCC-ceEEEEecccCCCCCceEEEEECCCCCEEEE
Confidence 99999999999988 455555 689999999999999998877
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=272.89 Aligned_cols=288 Identities=15% Similarity=0.212 Sum_probs=216.4
Q ss_pred ceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEE--eecCCCceeeeeeccc
Q 012721 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK--EMDHFPFVSSENTLLA 169 (457)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 169 (457)
+++.++.+|.. ..|.+++| +|++++|++++.|++|++|++.++...... .......|.+++|++.
T Consensus 6 ~~~~~~~~h~~-----------~~v~~l~~--sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 6 VLLGRVPAHPD-----------SRCWFLAW--NPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp EEEEEECCSTT-----------SCEEEEEE--CTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEeeeecCCCC-----------CcEEEEEE--CCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCC
Confidence 46678888881 38999999 789999999999999999999887644322 2234556888888764
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (457)
...++... .++.+++|+.+... .+++..+ .+|...|.+++|+|++++|++| .|+.|++||++.
T Consensus 73 g~~l~s~s--------------~D~~v~iw~~~~~~-~~~~~~~-~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 73 GNYLASAS--------------FDATTCIWKKNQDD-FECVTTL-EGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SSEEEEEE--------------TTSCEEEEEECCC--EEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred CCEEEEEE--------------CCCcEEEEEccCCC-eEEEEEc-cCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 33333322 25689999986432 2344555 7999999999999999999999 999999999984
Q ss_pred CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (457)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (457)
... ...+ ..+.+|...|.+++|+|++ .+|++++.|+.|++||++.++.. .. ..+.+|..
T Consensus 137 ~~~-~~~~----~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~----~~-----------~~~~~h~~ 195 (345)
T 3fm0_A 137 EDE-YECV----SVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV----CC-----------ATLEGHES 195 (345)
T ss_dssp TSC-EEEE----EEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE----EE-----------EEECCCSS
T ss_pred CCC-eEEE----EEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE----EE-----------EEecCCCC
Confidence 332 2111 1257899999999999999 99999999999999999876421 00 12456788
Q ss_pred ceEEEEEccCCCeEEEEec-CcEEEEeccCCCCc--------------eeEeee-ccccccccccccCCCCccccceEEE
Q 012721 329 SISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP--------------VATFKI-HEHLRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~--------------~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
.|++++|+|+|++|++++. ++|++||....+.. +..+.+ |... |++++|
T Consensus 196 ~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~v~~ 260 (345)
T 3fm0_A 196 TVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRT---------------IYDIAW 260 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSC---------------EEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCc---------------EEEEEE
Confidence 9999999999999999875 99999997532211 112222 3322 378999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCCce--------eeEEecCCCcceeeeeccCCc-ceec
Q 012721 393 SGDGLHFATGSYSNLLRIFSHGVGSAG--------GITVEAGKNENRKPILQAAPR-ARRS 444 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~~~~~~--------~~~~~~~~~~v~~~~~~p~~~-~~~~ 444 (457)
+|++..|++++.|+.|++|+...+... .....+|...|++++|+|+++ ..++
T Consensus 261 ~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 261 CQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp CTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred ecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence 999999999999999999998765211 122358999999999999986 4444
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.5e-35 Score=291.32 Aligned_cols=348 Identities=12% Similarity=0.094 Sum_probs=264.1
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|.+++|+|+|++||+++ ++.|+||++.++.. ..+....+.+|.
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~-----------------------~~~~~~~~~~h~------- 63 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDS-----------------------KVPPVVQFTGHG------- 63 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCC-----------------------SSCSEEEECTTT-------
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCC-----------------------ccccceEEecCC-------
Confidence 45889999999999999999998 78999999987621 012456788898
Q ss_pred cccccCc-EEEEEEEecC--CCCEEEEeeCCCeEEEEEeccc------ceeEEEeec-CCCceeeeeeccccccccccCC
Q 012721 109 SLEIEEK-INRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQ------KVKKIKEMD-HFPFVSSENTLLAEKNFMNEHN 178 (457)
Q Consensus 109 ~~~~~~~-V~~v~~~~s~--~~~~l~s~s~d~~i~vw~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 178 (457)
+. |.+++| +| ++++|++++.|+.|++||+.++ .......+. ....+.+++|.+....++....
T Consensus 64 -----~~~v~~~~~--sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 136 (615)
T 1pgu_A 64 -----SSVVTTVKF--SPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 136 (615)
T ss_dssp -----TSCEEEEEE--CSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEEC
T ss_pred -----CceEEEEEE--CcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEecc
Confidence 88 999999 68 9999999999999999999765 333332222 4556888888876544443322
Q ss_pred C--------------------------CCceeccCCc--c---ccccceEEEeccCccccccceeeccCCCC---CeeEE
Q 012721 179 P--------------------------PSFAHGYHLE--W---TENMATKIANVGNSVHARCQKVYPHAHDF---NINSI 224 (457)
Q Consensus 179 ~--------------------------~~~~~~~~~~--~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~---~v~~~ 224 (457)
. ....+.+++. + ..++.+++||... .+++..+ .+|.. .|.++
T Consensus 137 ~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~---~~~~~~~-~~~~~~~~~v~~~ 212 (615)
T 1pgu_A 137 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPP---FKFSASD-RTHHKQGSFVRDV 212 (615)
T ss_dssp CSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTT---BEEEEEE-CSSSCTTCCEEEE
T ss_pred CCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC---cceeeee-cccCCCCceEEEE
Confidence 1 1233444543 2 2345899999764 3445555 77888 99999
Q ss_pred EeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc---CCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 225 SNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 225 ~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
+|+|+ +++|+++ .|+.|++||++ .++....+ .. .|...|.+++|+ ++ .+|++++.||.|++||+++
T Consensus 213 ~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~------~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~wd~~~ 283 (615)
T 1pgu_A 213 EFSPDSGEFVITVGSDRKISCFDGK-SGEFLKYI------EDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVWDVTT 283 (615)
T ss_dssp EECSTTCCEEEEEETTCCEEEEETT-TCCEEEEC------CBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEEETTT
T ss_pred EECCCCCCEEEEEeCCCeEEEEECC-CCCEeEEe------cccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEEECCC
Confidence 99999 9999999 99999999998 55555442 14 789999999999 88 9999999999999999986
Q ss_pred Ceeeccc-----------------------------------------cccccccc------------------------
Q 012721 300 SALCDHS-----------------------------------------ARILRDAA------------------------ 314 (457)
Q Consensus 300 ~~~~~~~-----------------------------------------~~~~~~~~------------------------ 314 (457)
++..... ...+..|.
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 284 SKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWS 363 (615)
T ss_dssp TEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETT
T ss_pred CcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEE
Confidence 5432100 00000000
Q ss_pred --------------------------------------c---------------------------------cc------
Q 012721 315 --------------------------------------E---------------------------------SH------ 317 (457)
Q Consensus 315 --------------------------------------~---------------------------------~~------ 317 (457)
. ..
T Consensus 364 ~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (615)
T 1pgu_A 364 SSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 443 (615)
T ss_dssp TTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred chhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeec
Confidence 0 00
Q ss_pred ----------------------Cc-----------c--cceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721 318 ----------------------GS-----------K--SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP 361 (457)
Q Consensus 318 ----------------------~~-----------~--~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~ 361 (457)
.. . ..+.+|...|.+++|+|++++|++++. +.|++||+.. ++.
T Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~-~~~ 522 (615)
T 1pgu_A 444 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS-REV 522 (615)
T ss_dssp ECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT-TEE
T ss_pred ccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC-Ccc
Confidence 00 0 234568889999999999999999875 9999999985 777
Q ss_pred eeEeee-ccccccccccccCCCCccccceEEEcC----------CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcc
Q 012721 362 VATFKI-HEHLRPKLCDLYNNDSIFDKFECSVSG----------DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNEN 430 (457)
Q Consensus 362 ~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~----------d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v 430 (457)
+..+.+ |...+ ++++|+| ++++|++++.||.|++||+.++.+....+.+|..+|
T Consensus 523 ~~~~~~~h~~~v---------------~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v 587 (615)
T 1pgu_A 523 KTSRWAFRTSKI---------------NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV 587 (615)
T ss_dssp EECCSCCCSSCE---------------EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE
T ss_pred eeEeecCCCCce---------------eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce
Confidence 777776 76654 7999999 999999999999999999999866788899999999
Q ss_pred eeeeeccCCcceec
Q 012721 431 RKPILQAAPRARRS 444 (457)
Q Consensus 431 ~~~~~~p~~~~~~~ 444 (457)
.+++|+|+++ ..+
T Consensus 588 ~~l~~s~~~~-l~s 600 (615)
T 1pgu_A 588 NNLLWETPST-LVS 600 (615)
T ss_dssp EEEEEEETTE-EEE
T ss_pred EEEEEcCCCC-eEE
Confidence 9999999999 555
No 42
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-36 Score=307.08 Aligned_cols=212 Identities=14% Similarity=0.116 Sum_probs=159.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++||+|+.||+|+||+..+.+. ... ..|.
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~---------------------------~~~-~~~~------- 58 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEV---------------------------VIK-LEDR------- 58 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEE---------------------------EEE-CSSC-------
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEE---------------------------EEE-cCCC-------
Confidence 45899999999999999999999999999999765542 122 2355
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.+|.+++| ++ +++|++++.|++|++||+.+++....+. ....|.+++|++....++...
T Consensus 59 -----~~V~~l~f--sp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~--~~~~V~~v~~sp~g~~l~sgs----------- 117 (902)
T 2oaj_A 59 -----SAIKEMRF--VK-GIYLVVINAKDTVYVLSLYSQKVLTTVF--VPGKITSIDTDASLDWMLIGL----------- 117 (902)
T ss_dssp -----CCEEEEEE--ET-TTEEEEEETTCEEEEEETTTCSEEEEEE--CSSCEEEEECCTTCSEEEEEE-----------
T ss_pred -----CCEEEEEE--cC-CCEEEEEECcCeEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEEEEEc-----------
Confidence 78999999 46 7799999999999999999987766554 345688888876444333322
Q ss_pred ccccccceEEEeccCccccccce-------eeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721 189 EWTENMATKIANVGNSVHARCQK-------VYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
.++.+++||++......... ....+|...|.+++|+|+ +..+++| .|+.| +||++ .++....+...
T Consensus 118 ---~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~-~~~~~~~~~~~ 192 (902)
T 2oaj_A 118 ---QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLV-ENEIKQSFIYE 192 (902)
T ss_dssp ---TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETT-TTEEEEEECCC
T ss_pred ---CCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECC-CCceEEEEecc
Confidence 26689999997643210000 122679999999999996 4688888 99999 99999 55555554211
Q ss_pred C-----------CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCee
Q 012721 260 P-----------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (457)
Q Consensus 260 ~-----------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~ 302 (457)
. .....|...|.+++|+|+| .+|++++.||.|++||+++++.
T Consensus 193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp BCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCCE
T ss_pred cCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCcE
Confidence 0 0123456789999999999 9999999999999999977553
No 43
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.2e-35 Score=266.94 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=196.7
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
...+|.+|. +.|.+++| +|++.+|++++.|++|++||+.++.....+
T Consensus 5 ~~~~~~~h~------------~~V~~~~f--sp~~~~l~s~~~dg~v~lWd~~~~~~~~~~------------------- 51 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDF--HPTEPWVLTTLYSGRVELWNYETQVEVRSI------------------- 51 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEE--CSSSSEEEEEETTSEEEEEETTTTEEEEEE-------------------
T ss_pred eEEeecCCC------------CceEEEEE--CCCCCEEEEEcCCCcEEEEECCCCceeEEe-------------------
Confidence 456788888 88999999 789999999999999999999887654332
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
..|..+|.+++|+|++++|++| .|+.|++||++ .++
T Consensus 52 ------------------------------------------~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~-~~~ 88 (304)
T 2ynn_A 52 ------------------------------------------QVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN-TGE 88 (304)
T ss_dssp ------------------------------------------ECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT-TCC
T ss_pred ------------------------------------------eccCCcEEEEEEeCCCCEEEEECCCCEEEEEECC-CCc
Confidence 4678899999999999999999 99999999998 555
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
.... +.+|...|.+++|+|++ .+|++|+.||+|++||++++... ...+.+|...|.
T Consensus 89 ~~~~-------~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~----------------~~~~~~h~~~v~ 144 (304)
T 2ynn_A 89 KVVD-------FEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWAL----------------EQTFEGHEHFVM 144 (304)
T ss_dssp EEEE-------EECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEE----------------EEEECCCCSCEE
T ss_pred EEEE-------EeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcch----------------hhhhcccCCcEE
Confidence 5544 67899999999999999 99999999999999999875321 012456788999
Q ss_pred EEEEcc-CCCeEEEEec-CcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcC--CCcEEEEEeCCC
Q 012721 332 DIKFAN-DGQHLLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSN 406 (457)
Q Consensus 332 ~~~~s~-~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg 406 (457)
+++|+| ++.+|++|+. +.|++||++. ..+...+. .|...+ ..+.|+| ++.+|++|+.|+
T Consensus 145 ~v~~~p~~~~~l~sgs~D~~v~iwd~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~~l~s~s~D~ 208 (304)
T 2ynn_A 145 CVAFNPKDPSTFASGCLDRTVKVWSLGQ-STPNFTLTTGQERGV---------------NYVDYYPLPDKPYMITASDDL 208 (304)
T ss_dssp EEEECTTCTTEEEEEETTSEEEEEETTC-SSCSEEEECCCTTCE---------------EEEEECCSTTCCEEEEEETTS
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEECCC-CCccceeccCCcCcE---------------EEEEEEEcCCCCEEEEEcCCC
Confidence 999999 6788998874 9999999975 44444443 333332 4677776 788999999999
Q ss_pred cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 407 LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 407 ~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+|++||++++ .....+.+|...|..++|+|+++..++
T Consensus 209 ~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 209 TIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp EEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred eEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEE
Confidence 9999999998 788999999999999999999987776
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-35 Score=270.59 Aligned_cols=260 Identities=14% Similarity=0.214 Sum_probs=187.7
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|.+.|++++|+|++++||+|+.|++|+||++...... ....+.+..+.+|.
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--------------------~~~~~~~~~~~~h~--------- 107 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--------------------TFEMDLLAIIEGHE--------- 107 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------------------------CCCEEEEEEC------------
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--------------------cccceeEEEEcCCC---------
Confidence 8999999999999999999999999999998643210 00223566788998
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|.+++| +|++++|++++.|++|++||+......
T Consensus 108 ---~~V~~v~~--sp~g~~las~s~D~~v~iwd~~~~~~~---------------------------------------- 142 (330)
T 2hes_X 108 ---NEVKGVAW--SNDGYYLATCSRDKSVWIWETDESGEE---------------------------------------- 142 (330)
T ss_dssp ----CEEEEEE--CTTSCEEEEEETTSCEEEEECCTTCCC----------------------------------------
T ss_pred ---CcEEEEEE--CCCCCEEEEEeCCCEEEEEeccCCCCC----------------------------------------
Confidence 88999999 789999999999999999998532110
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-ceeeeeecCCCcccCCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 268 (457)
.+++..+ .+|...|.+++|+|++.+|++| .|+.|++||..... +++.. +.+|..
T Consensus 143 ----------------~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~-------~~~h~~ 198 (330)
T 2hes_X 143 ----------------YECISVL-QEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAV-------LNGHEG 198 (330)
T ss_dssp ----------------CEEEEEE-CCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEE-------ECCCSS
T ss_pred ----------------eEEEEEe-ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEE-------ccCCCC
Confidence 0111122 6899999999999999999999 99999999987321 33333 678999
Q ss_pred ceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee-ccccceEEEEEccCCCeEEEE
Q 012721 269 VITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT-EIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 269 ~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~g~~l~s~ 345 (457)
.|.+++|+|+ + .+|++++.|++|++||++.+..... ..+. ....+. .|...|.+++|++++ +|+++
T Consensus 199 ~v~~~~~~~~~~~-~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~-------~~~~~~~~h~~~v~~v~~s~~~-~l~s~ 267 (330)
T 2hes_X 199 TVWSSDFDKTEGV-FRLCSGSDDSTVRVWKYMGDDEDDQ--QEWV-------CEAILPDVHKRQVYNVAWGFNG-LIASV 267 (330)
T ss_dssp CEEEEEECCSSSS-CEEEEEETTSCEEEEEEEEECTTSC--EEEE-------EEEECCSCCSSCEEEEEECTTS-CEEEE
T ss_pred cEEEEEecCCCCe-eEEEEEeCCCeEEEEEecCCCcccc--ceeE-------EeeecccccccceEEEEEcCCC-EEEEE
Confidence 9999999998 5 7899999999999999976421100 0000 001122 377899999999766 67766
Q ss_pred e-cCcEEEEeccCCCC--ceeE-eeeccc-cccccccccCCCCccccceEEEcC--CCcEEEEEeCCCcEEEEecCC
Q 012721 346 D-YMNLKLWDIRMDST--PVAT-FKIHEH-LRPKLCDLYNNDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 346 ~-~~~i~~wd~~~~~~--~~~~-~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+ |+.|++||... +. .... ..+|.. .+ .+++|+| ++++|++|+.||+|+||++++
T Consensus 268 ~~dg~v~iw~~~~-~~~~~~~~~~~~h~~~~v---------------~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 268 GADGVLAVYEEVD-GEWKVFAKRALCHGVYEI---------------NVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp ETTSCEEEEEEET-TEEEEEEEESCTTTTSCE---------------EEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred eCCCEEEEEEcCC-CceEEEeccccccccceE---------------EEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 5 59999999874 32 2222 234543 32 6899999 789999999999999999875
No 45
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.8e-36 Score=281.63 Aligned_cols=254 Identities=12% Similarity=0.098 Sum_probs=186.3
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|.++|++++|+|++++||+|+.||.|+||++.++.. +.+..+.+|.
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------------------------~~~~~~~~h~--------- 55 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------------------------KHARTFSDHD--------- 55 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------------------------EECCCBCCCS---------
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce-------------------------EEEEEEecCC---------
Confidence 567999999999999999999999999999987631 1456778888
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc-eeEEEe-ecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKE-MDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| ++++++|++++.|+.|++||+.++. ...... ......+.+++|.+....++...
T Consensus 56 ---~~v~~~~~--s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------- 119 (377)
T 3dwl_C 56 ---KIVTCVDW--APKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGS----------- 119 (377)
T ss_dssp ---SCEEEEEE--CTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEE-----------
T ss_pred ---ceEEEEEE--eCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEe-----------
Confidence 88999999 7889999999999999999999876 222222 23445677888876433333222
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc--------------ee
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--------------CF 253 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--------------~~ 253 (457)
.++.+++|+++......+.+.+...|...|.+++|+|++++|+++ .|+.|++||++.... ..
T Consensus 120 ---~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 196 (377)
T 3dwl_C 120 ---GARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFN 196 (377)
T ss_dssp ---SSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEE
T ss_pred ---cCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchh
Confidence 256799999987654445566623399999999999999999999 999999999862110 01
Q ss_pred eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE
Q 012721 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (457)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 333 (457)
... ..+ +|...|.+++|+|++ ++|++++.||.|++||+++++.... ....+.+|...|.++
T Consensus 197 ~~~----~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~v~~~ 257 (377)
T 3dwl_C 197 TVC----AEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPR-------------ALITVKLSQLPLRSL 257 (377)
T ss_dssp EEE----ECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEE-------------ECCCEECSSSCEEEE
T ss_pred hhh----hcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcce-------------eeEeecCCCCceEEE
Confidence 110 124 799999999999999 9999999999999999998753100 012245677899999
Q ss_pred EEccCCCeEEEEecCcEEEEecc
Q 012721 334 KFANDGQHLLSRDYMNLKLWDIR 356 (457)
Q Consensus 334 ~~s~~g~~l~s~~~~~i~~wd~~ 356 (457)
+|+|++++|++++++.+.+|+..
T Consensus 258 ~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 258 LWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp EEEETTEEEEEESSSSEEEECCC
T ss_pred EEcCCCCEEEEEcCCcEEEEEeC
Confidence 99999999999988666688775
No 46
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-36 Score=289.34 Aligned_cols=261 Identities=12% Similarity=0.066 Sum_probs=192.6
Q ss_pred ccccCCceEEEEECCCC---------CEEEEE-------------------eCCCeEEEEEecCCccCCCcccchhhhhh
Q 012721 28 ELQDVDIVSAIEFDKTG---------DYLAVG-------------------DRGGRVILFETVGGKNTPNQHISRSELEK 79 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~---------~~latg-------------------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 79 (457)
.+.+.+.|++|+|+|++ ++||+| +.|++|+||++.+++..
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~------------ 196 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLH------------ 196 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCC------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCC------------
Confidence 34467899999999986 677764 47789999999876531
Q ss_pred cccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEec----CCCCEEEEeeCCCeEEEEEecccceeEEEee
Q 012721 80 QMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAA----PNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (457)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s----~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 155 (457)
......+.+|. +.|.+++|+|. +++.+||+++.|++|++||+.++........
T Consensus 197 -----------~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~ 253 (524)
T 2j04_B 197 -----------CVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK 253 (524)
T ss_dssp -----------EEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE
T ss_pred -----------ceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce
Confidence 11223456666 78999999653 2367999999999999999986642100000
Q ss_pred cCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE
Q 012721 156 DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS 235 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 235 (457)
. ...+...+ .+|...|++++|++++ .|++
T Consensus 254 ~-------------------------------------------------~~~p~~~l-~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 254 M-------------------------------------------------CEKPSLTL-SLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp C-------------------------------------------------CCSCSEEE-CCTTTCEEEEEESSSS-EEEE
T ss_pred e-------------------------------------------------ecCceEEE-EcCCCCEEEEEecCCC-eEEE
Confidence 0 00111222 6889999999999864 7888
Q ss_pred e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE--EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccc
Q 012721 236 A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA--EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRD 312 (457)
Q Consensus 236 ~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v--~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 312 (457)
| .||+|++||++........ +.+|...|.++ +|+|++..+|++++.|++|+|||+++++.. ..+.
T Consensus 283 gs~DgtV~lWD~~~~~~~~~~-------~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~~~- 350 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPEVPSFY-------DQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KTTV- 350 (524)
T ss_dssp EETTSEEEEEETTBCSSCSEE-------EECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH----CEEE-
T ss_pred EeCCCEEEEEECCCCCCceEE-------eecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc----cccc-
Confidence 8 9999999999843333222 57899999999 466764378999999999999999886432 2222
Q ss_pred cccccCcccceeccc--cceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721 313 AAESHGSKSFFTEII--ASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (457)
Q Consensus 313 ~~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 389 (457)
+|. ..|.+++|+|+++.++++++ ++|++||++. +.++..+.+|...+ ++
T Consensus 351 ------------~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~-~~~~~~l~gH~~~V---------------~s 402 (524)
T 2j04_B 351 ------------SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRA-AFAVHPLVSRETTI---------------TA 402 (524)
T ss_dssp ------------EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTC-TTCCEEEEECSSCE---------------EE
T ss_pred ------------cccccCcccceEeCCCcCeEEEeCCCCcEEEEECcc-cccceeeecCCCce---------------EE
Confidence 222 24789999999999998765 9999999986 67777888898865 79
Q ss_pred EEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 390 CSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 390 ~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
++|+|++++|++|+.||+|++||+.
T Consensus 403 va~Sp~g~~l~Sgs~Dgtv~lwd~~ 427 (524)
T 2j04_B 403 IGVSRLHPMVLAGSADGSLIITNAA 427 (524)
T ss_dssp EECCSSCCBCEEEETTTEEECCBSC
T ss_pred EEeCCCCCeEEEEECCCEEEEEech
Confidence 9999999999999999999999853
No 47
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=274.11 Aligned_cols=280 Identities=17% Similarity=0.193 Sum_probs=221.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
|.+.|++++|+|++++||+|+.||.|++|+ .+++ .+..+.+|.
T Consensus 107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~---------------------------~~~~~~~~~--------- 149 (425)
T 1r5m_A 107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGA---------------------------LLNVLNFHR--------- 149 (425)
T ss_dssp -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSC---------------------------EEEEECCCC---------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCC---------------------------eeeeccCCC---------
Confidence 678999999999999999999999999999 3222 456778888
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCc--------------eeeeeecccccccccc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPF--------------VSSENTLLAEKNFMNE 176 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~ 176 (457)
..|.+++| ++++.+|++++.|+.|++||+.+++............ +.++.|.+. +.++..
T Consensus 150 ---~~v~~~~~--~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (425)
T 1r5m_A 150 ---APIVSVKW--NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD-DKFVIP 223 (425)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET-TEEEEE
T ss_pred ---ccEEEEEE--CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC-CEEEEE
Confidence 88999999 7899999999999999999999887766554332211 333333321 111111
Q ss_pred CCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeee
Q 012721 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (457)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (457)
..++.+++|++... +.+..+ ..|...|.+++|+|++++|+++ .|+.|++||++ .++....
T Consensus 224 --------------~~~g~i~~~d~~~~---~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~ 284 (425)
T 1r5m_A 224 --------------GPKGAIFVYQITEK---TPTGKL-IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG-NGNSQNC 284 (425)
T ss_dssp --------------CGGGCEEEEETTCS---SCSEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS-SBSCSEE
T ss_pred --------------cCCCeEEEEEcCCC---ceeeee-ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC-CCccceE
Confidence 23558999999753 444444 6899999999999999999999 99999999998 4544443
Q ss_pred eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
+.+|...|.+++|+|++ ++++++.||.|++||+++++.. .. +..|...|.+++|
T Consensus 285 -------~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~~~~i~~~~~ 338 (425)
T 1r5m_A 285 -------FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLL----AL-------------SIVDGVPIFAGRI 338 (425)
T ss_dssp -------ECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEE----EE-------------EECTTCCEEEEEE
T ss_pred -------ecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEe----Ee-------------cccCCccEEEEEE
Confidence 56788999999999987 8999999999999999887543 22 2345678999999
Q ss_pred ccCCCeEEEEec-CcEEEEeccCCCC--------------------ceeEeeeccc--cccccccccCCCCccccceEEE
Q 012721 336 ANDGQHLLSRDY-MNLKLWDIRMDST--------------------PVATFKIHEH--LRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 336 s~~g~~l~s~~~-~~i~~wd~~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
+|++++|++++. +.|++||++. .+ ++..+..|.. .+ ++++|
T Consensus 339 s~~~~~l~~~~~dg~i~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~ 402 (425)
T 1r5m_A 339 SQDGQKYAVAFMDGQVNVYDLKK-LNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYI---------------FDLSW 402 (425)
T ss_dssp CTTSSEEEEEETTSCEEEEECHH-HHC--------------CEECCEEEEECCTTCCCCE---------------EEEEE
T ss_pred cCCCCEEEEEECCCeEEEEECCC-CccceeeeecccccccCcccchhhhhhcCcccCCce---------------EEEEc
Confidence 999999999875 9999999975 44 5667776644 33 69999
Q ss_pred cCCCcEEEEEeCCCcEEEEecC
Q 012721 393 SGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 393 s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+|++++|++++.||.|++|+++
T Consensus 403 s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 403 NCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CTTSSEEEEEESSSCCEEEECC
T ss_pred cCCCceEEEEecCceEEEEeec
Confidence 9999999999999999999985
No 48
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-35 Score=271.47 Aligned_cols=258 Identities=16% Similarity=0.235 Sum_probs=204.1
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
...|.+.|++++|+|++++||+|+.||.|+||++..... +.+..+.+|.
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-------------------------~~~~~~~~h~------ 55 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE------ 55 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-------------------------EEEEEECCCS------
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-------------------------eeeeEecCCC------
Confidence 345999999999999999999999999999999974432 2566788898
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++|.+..++.+|++++.|+.|++||+.+++......
T Consensus 56 ------~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~--------------------------------- 96 (379)
T 3jrp_A 56 ------GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV--------------------------------- 96 (379)
T ss_dssp ------SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEE---------------------------------
T ss_pred ------CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeee---------------------------------
Confidence 88999999433338999999999999999999876332211
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
...|...|.+++|+|+ +.+|+++ .|+.|++||++........ .+.
T Consensus 97 --------------------------~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~ 144 (379)
T 3jrp_A 97 --------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IID 144 (379)
T ss_dssp --------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE------EEE
T ss_pred --------------------------ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE------Eec
Confidence 1568889999999999 9999999 9999999999843222211 256
Q ss_pred CCCCceEEEEEec-------------CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceE
Q 012721 265 DLTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASIS 331 (457)
Q Consensus 265 ~~~~~i~~v~~~p-------------~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 331 (457)
+|...|.+++|+| ++ .+|++++.||.|++||++++..... . ...+.+|...|.
T Consensus 145 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~---~----------~~~~~~h~~~v~ 210 (379)
T 3jrp_A 145 AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYV---L----------ESTLEGHSDWVR 210 (379)
T ss_dssp CCTTCEEEEEECCCC----------CTT-CEEEEEETTSCEEEEEEETTTTEEE---E----------EEEECCCSSCEE
T ss_pred CCCCceEEEEEcCccccccccccCCCCC-CEEEEEeCCCeEEEEEecCCCccee---e----------EEEEecccCcEe
Confidence 7899999999999 57 9999999999999999987542211 1 112456788999
Q ss_pred EEEEccC---CCeEEEEec-CcEEEEeccCCCCce--eEee--eccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 332 DIKFAND---GQHLLSRDY-MNLKLWDIRMDSTPV--ATFK--IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 332 ~~~~s~~---g~~l~s~~~-~~i~~wd~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+++|+|+ +++|++++. +.|++||++...... ..+. .|... +++++|+|++++|++++
T Consensus 211 ~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~---------------v~~~~~s~~g~~l~~~~ 275 (379)
T 3jrp_A 211 DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLALSG 275 (379)
T ss_dssp EEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSC---------------EEEEEECSSSCCEEEEE
T ss_pred EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCc---------------EEEEEEcCCCCEEEEec
Confidence 9999999 899998874 999999998632221 1111 13332 26899999999999999
Q ss_pred CCCcEEEEecCCC
Q 012721 404 YSNLLRIFSHGVG 416 (457)
Q Consensus 404 ~dg~i~iw~~~~~ 416 (457)
.||.|++|++.++
T Consensus 276 ~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 276 GDNKVTLWKENLE 288 (379)
T ss_dssp SSSSEEEEEEEET
T ss_pred CCCcEEEEeCCCC
Confidence 9999999999865
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.1e-34 Score=298.21 Aligned_cols=270 Identities=18% Similarity=0.193 Sum_probs=232.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|.+++|+|++++||+|+.||.|+|||+.+++ .+..+.+|.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~---------------------------~~~~~~~~~------- 55 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQV---------------------------EVRSIQVTE------- 55 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS-------
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCc---------------------------eEEEEecCC-------
Confidence 3499999999999999999999999999999998765 456778888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
.+|.+++| ++++++|++++.|+.|++||+.+++.....
T Consensus 56 -----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~----------------------------------- 93 (814)
T 3mkq_A 56 -----TPVRAGKF--IARKNWIIVGSDDFRIRVFNYNTGEKVVDF----------------------------------- 93 (814)
T ss_dssp -----SCEEEEEE--EGGGTEEEEEETTSEEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CcEEEEEE--eCCCCEEEEEeCCCeEEEEECCCCcEEEEE-----------------------------------
Confidence 88999999 689999999999999999999887654332
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+|...|.+++|+|++++|+++ .|+.|++||++........ +.+|.
T Consensus 94 --------------------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~-------~~~~~ 140 (814)
T 3mkq_A 94 --------------------------EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQT-------FEGHE 140 (814)
T ss_dssp --------------------------ECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEE-------EECCS
T ss_pred --------------------------ecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEE-------EcCCC
Confidence 5688899999999999999999 9999999999844344443 57799
Q ss_pred CceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc--CCCeEEE
Q 012721 268 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLS 344 (457)
Q Consensus 268 ~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s 344 (457)
..|.+++|+| ++ ..|++++.||.|++||+.++... ..+. ..|...+.+++|+| ++.+|++
T Consensus 141 ~~v~~~~~~p~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~~~~~l~~ 203 (814)
T 3mkq_A 141 HFVMCVAFNPKDP-STFASGCLDRTVKVWSLGQSTPN----FTLT------------TGQERGVNYVDYYPLPDKPYMIT 203 (814)
T ss_dssp SCEEEEEEETTEE-EEEEEEETTSEEEEEETTCSSCS----EEEE------------CCCTTCCCEEEECCSTTCCEEEE
T ss_pred CcEEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcce----eEEe------------cCCCCCEEEEEEEECCCCCEEEE
Confidence 9999999999 66 89999999999999999876422 1111 12336799999999 9999999
Q ss_pred Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 423 (457)
++. +.|++||++. ++.+..+.+|...+ .+++|+|++.+|++++.||.|++||+.++ .....+
T Consensus 204 ~~~dg~i~~~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~ 266 (814)
T 3mkq_A 204 ASDDLTIKIWDYQT-KSCVATLEGHMSNV---------------SFAVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL 266 (814)
T ss_dssp ECTTSEEEEEETTT-TEEEEEEECCSSCE---------------EEEEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE
T ss_pred EeCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe
Confidence 875 9999999986 77888888887654 68999999999999999999999999998 778889
Q ss_pred ecCCCcceeeeeccCCcc
Q 012721 424 EAGKNENRKPILQAAPRA 441 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~~~ 441 (457)
..|..++.+++|+|++..
T Consensus 267 ~~~~~~v~~~~~~~~~~~ 284 (814)
T 3mkq_A 267 NVGLERSWCIATHPTGRK 284 (814)
T ss_dssp CCSSSSEEEEEECTTCGG
T ss_pred ecCCCcEEEEEEccCCCc
Confidence 999999999999999874
No 50
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=269.73 Aligned_cols=275 Identities=13% Similarity=0.157 Sum_probs=213.7
Q ss_pred ccCCceEEEEECCCCC-EEEEEeC---CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 30 QDVDIVSAIEFDKTGD-YLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~-~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
.|.+.|.+++|+|++. ++++|+. ||.|+||++.+++.. .....+|.
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~--------------------------~~~~~~~~---- 65 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLK--------------------------LLREIEKA---- 65 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEE--------------------------EEEEEEES----
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccc--------------------------ceeeeccc----
Confidence 3899999999999995 4556665 899999999877631 11222565
Q ss_pred ccccccccCcEEEEEEEecCC---CCEEEEeeCCCeEEEEEecccc-eeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 106 YLKSLEIEEKINRVRWCAAPN---GSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~---~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
..|.+++| +++ +.+|++++.|+.|++||+.+++ ....
T Consensus 66 --------~~v~~~~~--~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------- 106 (357)
T 3i2n_A 66 --------KPIKCGTF--GATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS----------------------------- 106 (357)
T ss_dssp --------SCEEEEEC--TTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE-----------------------------
T ss_pred --------CcEEEEEE--cCCCCCCceEEEecCCCeEEEEeCCCCCccEEE-----------------------------
Confidence 78999999 566 6899999999999999998765 2221
Q ss_pred ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEE------eCCCCCEEEEe-CCCeEEEEEcCCCcceee
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS------NNSDCETFVSA-DDLRINLWNLEISDQCFN 254 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~------~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~ 254 (457)
+ .+|...|.+++ |+|++++|+++ .|+.|++||++.......
T Consensus 107 -------------------------------~-~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 107 -------------------------------V-KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp -------------------------------E-CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred -------------------------------E-EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 1 57888999994 57899999999 999999999994443444
Q ss_pred eeecCCCcccCCCCceEEEE----EecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721 255 IVDMKPSNMDDLTEVITSAE----FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~v~----~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 330 (457)
.+... ...+...+.+++ |+|++ .+|++++.||.|++||+++++.. . ...|...|
T Consensus 155 ~~~~~---~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~----~--------------~~~~~~~v 212 (357)
T 3i2n_A 155 NMEPV---QGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMALR----W--------------ETNIKNGV 212 (357)
T ss_dssp EECCC---TTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTEEE----E--------------EEECSSCE
T ss_pred ecccc---CCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCcee----e--------------ecCCCCce
Confidence 43111 111234788888 67888 99999999999999999987532 1 13356789
Q ss_pred EEEEEcc---CCCeEEEEec-CcEEEEeccCCCCceeEee-----eccccccccccccCCCCccccceEEEcCCCc-EEE
Q 012721 331 SDIKFAN---DGQHLLSRDY-MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFA 400 (457)
Q Consensus 331 ~~~~~s~---~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 400 (457)
.+++|+| ++.+|++++. +.|++||++. ++....+. +|...+ ++++|+|++. +|+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~ 276 (357)
T 3i2n_A 213 CSLEFDRKDISMNKLVATSLEGKFHVFDMRT-QHPTKGFASVSEKAHKSTV---------------WQVRHLPQNRELFL 276 (357)
T ss_dssp EEEEESCSSSSCCEEEEEESTTEEEEEEEEE-EETTTEEEEEEEECCSSCE---------------EEEEEETTEEEEEE
T ss_pred EEEEcCCCCCCCCEEEEECCCCeEEEEeCcC-CCcccceeeeccCCCcCCE---------------EEEEECCCCCcEEE
Confidence 9999999 8999998875 9999999975 45544443 666554 6899999998 899
Q ss_pred EEeCCCcEEEEecCCCC------------------ceeeEEecCCCcceeeeeccCCccee
Q 012721 401 TGSYSNLLRIFSHGVGS------------------AGGITVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 401 s~~~dg~i~iw~~~~~~------------------~~~~~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
+++.||.|++||+.++. .....+.+|..+|.+++|+|+++..+
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 337 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLC 337 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEE
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEE
Confidence 99999999999998753 24667889999999999999998876
No 51
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-34 Score=275.59 Aligned_cols=303 Identities=13% Similarity=0.141 Sum_probs=221.7
Q ss_pred cccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|.+.|++++|+| ++++||+|+.||+|+|||+.+.+.. ...+....+ +|.
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~---------------------~~~~~~~~~-~h~------ 111 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG---------------------EVYSSSLTY-DCS------ 111 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT---------------------CCCSCSEEE-ECS------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC---------------------cccceeeec-cCC------
Confidence 34889999999999 9999999999999999998762210 000111122 366
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEec---ccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVR---DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|.+++| ++++.+|++++.|+.|++||+. .++........ .+..+.+.+
T Consensus 112 ------~~v~~~~~--~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~---~i~~~~~~~---------------- 164 (437)
T 3gre_A 112 ------STVTQITM--IPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCE---CIRKINLKN---------------- 164 (437)
T ss_dssp ------SCEEEEEE--CTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEE---EEEEEEGGG----------------
T ss_pred ------CCEEEEEE--eCCCCEEEEEeCCCEEEEEEeccccCCceeeccccc---eeEEEEccC----------------
Confidence 88999999 6889999999999999999995 44443332211 111111110
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEE--eCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS--NNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
.++...+.++. +++++.+|+++ .|+.|++||++ .++....
T Consensus 165 ------------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~------ 207 (437)
T 3gre_A 165 ------------------------------FGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIR-TLERLQI------ 207 (437)
T ss_dssp ------------------------------GSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETT-TCCEEEE------
T ss_pred ------------------------------cccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC-CCeeeEE------
Confidence 11566788887 67899999999 99999999998 5555554
Q ss_pred cccC--CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc---
Q 012721 262 NMDD--LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA--- 336 (457)
Q Consensus 262 ~~~~--~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--- 336 (457)
+.+ |...|++++|+|++ .+|++|+.||.|++||+++++.. ..+. ..|...|.+++|+
T Consensus 208 -~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~------------~~~~~~v~~~~~~~~~ 269 (437)
T 3gre_A 208 -IENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNVLI----RSWS------------FGDHAPITHVEVCQFY 269 (437)
T ss_dssp -EECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTEEE----EEEB------------CTTCEEEEEEEECTTT
T ss_pred -EccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCccEE----EEEe------------cCCCCceEEEEecccc
Confidence 344 78999999999998 99999999999999999987543 2221 1345689999665
Q ss_pred -cCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccccc-----------ccCCCCccccceEEEcCCCcEEEEEe
Q 012721 337 -NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCD-----------LYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 337 -~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
|++++|++++. +.|++||++. ++.+..+.+|...+....- +........|++++|+ ++++|++|+
T Consensus 270 s~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~ 347 (437)
T 3gre_A 270 GKNSVIVVGGSSKTFLTIWNFVK-GHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDE 347 (437)
T ss_dssp CTTEEEEEEESTTEEEEEEETTT-TEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEG
T ss_pred CCCccEEEEEcCCCcEEEEEcCC-CcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecC
Confidence 56889999875 9999999986 7888888877654432110 0001122346899999 889999999
Q ss_pred CCCcEEEEecCCCCceeeEEec-------------------------------------CCCcceeeeeccC--Ccceec
Q 012721 404 YSNLLRIFSHGVGSAGGITVEA-------------------------------------GKNENRKPILQAA--PRARRS 444 (457)
Q Consensus 404 ~dg~i~iw~~~~~~~~~~~~~~-------------------------------------~~~~v~~~~~~p~--~~~~~~ 444 (457)
.|+.|++||+.++ +....+.+ |...|++++|+++ ++...+
T Consensus 348 ~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s 426 (437)
T 3gre_A 348 ATSSIVMFSLNEL-SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVA 426 (437)
T ss_dssp GGTEEEEEETTCG-GGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEE
T ss_pred CCCeEEEEECCCc-ccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEE
Confidence 9999999999998 45555554 8899999999988 444444
No 52
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=8.1e-35 Score=267.90 Aligned_cols=279 Identities=10% Similarity=0.023 Sum_probs=222.1
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|++++|+|++++|++|+.||.|+||++.++... .....+.+|.
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~------------------------~~~~~~~~~~-------- 56 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------------------------VDLLQSLRYK-------- 56 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------------------------EEEEEEEECS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc------------------------ccceeeeecC--------
Confidence 58999999999999999999999999999999876520 1223455777
Q ss_pred ccccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEe-cccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 110 LEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKV-RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..|.+++| ++++. +|++++.|+.|++|++ .+++....
T Consensus 57 ----~~v~~~~~--~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~----------------------------------- 95 (342)
T 1yfq_A 57 ----HPLLCCNF--IDNTDLQIYVGTVQGEILKVDLIGSPSFQAL----------------------------------- 95 (342)
T ss_dssp ----SCEEEEEE--EESSSEEEEEEETTSCEEEECSSSSSSEEEC-----------------------------------
T ss_pred ----CceEEEEE--CCCCCcEEEEEcCCCeEEEEEeccCCceEec-----------------------------------
Confidence 88999999 56899 9999999999999999 77654211
Q ss_pred CccccccceEEEeccCccccccceeeccC--CCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCC--------cceeeee
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHA--HDFNINSISNNSDCETFVSA-DDLRINLWNLEIS--------DQCFNIV 256 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~--------~~~~~~~ 256 (457)
.+ |...|.+++|+| +.+|+++ .|+.|++||++.. .+...
T Consensus 96 ---------------------------~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-- 145 (342)
T 1yfq_A 96 ---------------------------TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSN-- 145 (342)
T ss_dssp ---------------------------BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSS--
T ss_pred ---------------------------cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeee--
Confidence 45 889999999999 9999999 9999999999831 22222
Q ss_pred ecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
.+. |...+.+++|+|++ +++++.|+.|++||+++ +.... .. ....|...+.+++|
T Consensus 146 -----~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~---~~------------~~~~~~~~i~~i~~ 201 (342)
T 1yfq_A 146 -----NTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNG---TI------------EESGLKYQIRDVAL 201 (342)
T ss_dssp -----SSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCC---EE------------EECSCSSCEEEEEE
T ss_pred -----EEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccc---ee------------eecCCCCceeEEEE
Confidence 133 88899999999875 99999999999999987 43210 00 11235678999999
Q ss_pred cc-CCCeEEEEec-CcEEEEeccCC-----CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721 336 AN-DGQHLLSRDY-MNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (457)
Q Consensus 336 s~-~g~~l~s~~~-~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 408 (457)
+| +++++++++. |.|++|+++.. .+....+..|..... ..+....+.+++|+|++++|++++.||.|
T Consensus 202 ~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~~~s~~~~~l~~~~~dg~i 275 (342)
T 1yfq_A 202 LPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK------DTNLAYPVNSIEFSPRHKFLYTAGSDGII 275 (342)
T ss_dssp CSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT------CCSSCCCEEEEEECTTTCCEEEEETTSCE
T ss_pred CCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc------ccccceeEEEEEEcCCCCEEEEecCCceE
Confidence 99 9999999875 99999999864 277778887754110 00011123789999999999999999999
Q ss_pred EEEecCCCCceeeEEecC-CCcceeeeeccCCcceec
Q 012721 409 RIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRS 444 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 444 (457)
++||+.++ +....+.+| ..+|.+++ |++...++
T Consensus 276 ~vwd~~~~-~~~~~~~~~h~~~v~~~~--~~~~~l~s 309 (342)
T 1yfq_A 276 SCWNLQTR-KKIKNFAKFNEDSVVKIA--CSDNILCL 309 (342)
T ss_dssp EEEETTTT-EEEEECCCCSSSEEEEEE--ECSSEEEE
T ss_pred EEEcCccH-hHhhhhhcccCCCceEec--CCCCeEEE
Confidence 99999998 678888998 99999999 88887766
No 53
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=3.4e-34 Score=263.97 Aligned_cols=270 Identities=12% Similarity=0.137 Sum_probs=207.3
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++||+|+.||.|+||++.++.. ..+....+.+|.
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~-----------------------~~~~~~~~~~~~------- 57 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTS-----------------------NWELSDSWRAHD------- 57 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSC-----------------------CEEEEEEEECCS-------
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCC-----------------------cceecceeccCC-------
Confidence 35999999999999999999999999999999987653 234667788898
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++|.|..++.+|++++.|+.|++||+..+......
T Consensus 58 -----~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~----------------------------------- 97 (351)
T 3f3f_A 58 -----SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSG----------------------------------- 97 (351)
T ss_dssp -----SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSS-----------------------------------
T ss_pred -----CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccc-----------------------------------
Confidence 8899999953226899999999999999999876421000
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeec------C
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDM------K 259 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------~ 259 (457)
...+++..+ ..|...|.+++|+|+ +.+|+++ .|+.|++||++. ......+.. .
T Consensus 98 ----------------~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 98 ----------------RRWNKLCTL-NDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALE-PSDLRSWTLTSEMKVL 159 (351)
T ss_dssp ----------------CSEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSS-TTCTTCCEEEEEEESC
T ss_pred ----------------cCcceeeee-cccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCC-hHHhcccccccccccc
Confidence 000112222 678999999999999 9999999 999999999983 333222111 1
Q ss_pred CCcccCCCCceEEEEEecC---CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 260 PSNMDDLTEVITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
......|...+.+++|+|+ + .++++++.|+.+.+|+...++.. .. ..+.+|...|++++|+
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~~~~~~~~~-----~~----------~~~~~h~~~i~~~~~~ 223 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSP-EKLAVSALEQAIIYQRGKDGKLH-----VA----------AKLPGHKSLIRSISWA 223 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSC-CEEEEEETTEEEEEEECTTSCEE-----EE----------EECCCCCSCEEEEEEC
T ss_pred ccccCCcccceeEEEeccCCCCC-cEEEEecCCCcEEEEccCCCcee-----ee----------eecCCCCcceeEEEEC
Confidence 1112468889999999997 6 89999999999988887765421 11 1235678899999999
Q ss_pred cCC----CeEEEEec-CcEEEEeccCCC---------------------------------------------CceeEee
Q 012721 337 NDG----QHLLSRDY-MNLKLWDIRMDS---------------------------------------------TPVATFK 366 (457)
Q Consensus 337 ~~g----~~l~s~~~-~~i~~wd~~~~~---------------------------------------------~~~~~~~ 366 (457)
|++ ++|++++. +.|++||++... +.+..+.
T Consensus 224 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 224 PSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp CCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEEC
T ss_pred CCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 998 78998875 999999997521 3344455
Q ss_pred eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
+|...+ ++++|+|++++|++++.||.|++|++.+++
T Consensus 304 ~h~~~v---------------~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 304 DHNGEV---------------WSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp TTSSCE---------------EEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccccE---------------EEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 555543 799999999999999999999999999874
No 54
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-35 Score=281.32 Aligned_cols=311 Identities=12% Similarity=0.095 Sum_probs=224.8
Q ss_pred CCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 25 PDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 25 ~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
+...+.|...|.+++|+|++++||+|+.||.|+||++..... ....+..+.+|.
T Consensus 60 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~-----------------------~~~~~~~~~~h~--- 113 (416)
T 2pm9_A 60 PIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANN-----------------------AINSMARFSNHS--- 113 (416)
T ss_dssp CSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTS-----------------------CCCEEEECCCSS---
T ss_pred EEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccc-----------------------cccchhhccCCc---
Confidence 344456899999999999999999999999999999986321 112556788888
Q ss_pred cccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccc------eeEEE--eecCCCceeeeeeccccccccc
Q 012721 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQK------VKKIK--EMDHFPFVSSENTLLAEKNFMN 175 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~------~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 175 (457)
..|.+++| +++ +.+|++++.|+.|++||+.+++ ..... .......+.+++|.+..+..+.
T Consensus 114 ---------~~v~~~~~--~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 182 (416)
T 2pm9_A 114 ---------SSVKTVKF--NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFA 182 (416)
T ss_dssp ---------SCCCEEEE--CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEE
T ss_pred ---------cceEEEEE--cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEE
Confidence 88999999 676 8899999999999999998875 22111 1123345667777665333332
Q ss_pred cCCCCCceeccCCccccccceEEEeccCccccccceeeccCC------CCCeeEEEeCCCC-CEEEEe-CCC---eEEEE
Q 012721 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAH------DFNINSISNNSDC-ETFVSA-DDL---RINLW 244 (457)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~~~-~d~---~i~iw 244 (457)
... .++.+++||++.. +++..+ ..+ ...|.+++|+|++ .+++++ .|+ .|++|
T Consensus 183 ~~~-------------~dg~v~iwd~~~~---~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 183 SAG-------------SSNFASIWDLKAK---KEVIHL-SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp EES-------------SSSCEEEEETTTT---EEEEEE-CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred EEc-------------CCCCEEEEECCCC---CcceEE-eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 211 2568999999754 333333 333 7889999999997 688888 888 99999
Q ss_pred EcCCCcceeeeeecCCCccc-CCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 245 NLEISDQCFNIVDMKPSNMD-DLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~-~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
|++........ +. +|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..
T Consensus 246 d~~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~~~----~~------------- 300 (416)
T 2pm9_A 246 DLRNANTPLQT-------LNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAEQL----SQ------------- 300 (416)
T ss_dssp ETTSTTSCSBC-------CCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCCEE----EE-------------
T ss_pred eCCCCCCCcEE-------eecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCccc----ee-------------
Confidence 99944344433 55 7999999999999 77 99999999999999999987533 22
Q ss_pred eeccccceEEEEEccCC-CeEEEEec-CcEEEEeccCCCCceeEeee--------------------ccccccccccccC
Q 012721 323 FTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTPVATFKI--------------------HEHLRPKLCDLYN 380 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g-~~l~s~~~-~~i~~wd~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 380 (457)
+.+|...|.+++|+|++ .+|++++. +.|++||+.. ......... |...+... .+..
T Consensus 301 ~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 378 (416)
T 2pm9_A 301 FPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN-LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVF-HLQA 378 (416)
T ss_dssp EECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC-CCCSSCC----------------------CCSCCCSS-CCCC
T ss_pred ecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC-CCCCcccccccccccCCcccccccccccccccccccc-cccC
Confidence 34567889999999999 89998874 9999999975 322111100 11100000 0000
Q ss_pred CC-CccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 381 ND-SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 381 ~~-~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.. ....+..++|+|||++|++++.|+.|+||++.+.
T Consensus 379 ~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 379 PTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp CSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred CccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 00 1112358999999999999999999999999875
No 55
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-33 Score=257.01 Aligned_cols=246 Identities=14% Similarity=0.264 Sum_probs=201.5
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|.+++|+|++++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~---------------------------~~~~~~~~~------- 107 (312)
T 4ery_A 62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK---------------------------CLKTLKGHS------- 107 (312)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS-------
T ss_pred ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCc---------------------------EEEEEcCCC-------
Confidence 3589999999999999999999999999999998765 456788888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| ++++++|++++.|+.|++||+.+++....+
T Consensus 108 -----~~v~~~~~--~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----------------------------------- 145 (312)
T 4ery_A 108 -----NYVFCCNF--NPQSNLIVSGSFDESVRIWDVKTGKCLKTL----------------------------------- 145 (312)
T ss_dssp -----SCEEEEEE--CSSSSEEEEEETTSCEEEEETTTCCEEEEE-----------------------------------
T ss_pred -----CCEEEEEE--cCCCCEEEEEeCCCcEEEEECCCCEEEEEe-----------------------------------
Confidence 88999999 789999999999999999999887654321
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
..|...|.+++|+|++++|+++ .|+.|++||++ .++....+ ...+.
T Consensus 146 --------------------------~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~~------~~~~~ 192 (312)
T 4ery_A 146 --------------------------PAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA-SGQCLKTL------IDDDN 192 (312)
T ss_dssp --------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-TCCEEEEE------CCSSC
T ss_pred --------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCceeeEE------eccCC
Confidence 5688899999999999999999 99999999998 45444432 34566
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
..+.+++|+|++ ++|++++.||.|++||+++++.. ..+..|... ...+......+++++|++|+.
T Consensus 193 ~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~ 257 (312)
T 4ery_A 193 PPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGKCL----KTYTGHKNE----------KYCIFANFSVTGGKWIVSGSE 257 (312)
T ss_dssp CCEEEEEECTTS-SEEEEEETTTEEEEEETTTTEEE----EEECSSCCS----------SSCCCEEEECSSSCEEEECCT
T ss_pred CceEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEE----EEEEecCCc----------eEEEEEEEEeCCCcEEEEECC
Confidence 789999999999 99999999999999999987643 333321100 011222333467889999875
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecC
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHG 414 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~ 414 (457)
+.|++||+.. ++.+..+.+|...+ .+++|+|++.+|++++ .|++|++|+.+
T Consensus 258 dg~i~vwd~~~-~~~~~~~~~h~~~v---------------~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 258 DNLVYIWNLQT-KEIVQKLQGHTDVV---------------ISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TSCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCEEEEEECCC-chhhhhhhccCCcE---------------EEEeecCcCCceEEEEccCCccEEEecCC
Confidence 9999999986 78888999888765 6899999999999987 69999999964
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-34 Score=259.07 Aligned_cols=265 Identities=14% Similarity=0.097 Sum_probs=217.9
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|++++| |++++||+|+.||.|++||+.+++ ....+..|.
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~---------------------------~~~~~~~~~-------- 59 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW---------------------------LGTVVYTGQ-------- 59 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSE---------------------------EEEEEEECS--------
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE---------------------------EEEEeecCC--------
Confidence 49999999999 999999999999999999997655 345667777
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.+++| ++++.+|++++.|+.|++|++......
T Consensus 60 ----~~v~~~~~--~~~~~~l~~~~~dg~i~~~~~~~~~~~--------------------------------------- 94 (313)
T 3odt_A 60 ----GFLNSVCY--DSEKELLLFGGKDTMINGVPLFATSGE--------------------------------------- 94 (313)
T ss_dssp ----SCEEEEEE--ETTTTEEEEEETTSCEEEEETTCCTTS---------------------------------------
T ss_pred ----ccEEEEEE--CCCCCEEEEecCCCeEEEEEeeecCCC---------------------------------------
Confidence 88999999 689999999999999999998764211
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
+++..+ .+|...|.+++| ++++++++ .|+.|++||. ...... +..|..
T Consensus 95 ------------------~~~~~~-~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~---~~~~~~-------~~~~~~ 143 (313)
T 3odt_A 95 ------------------DPLYTL-IGHQGNVCSLSF--QDGVVISGSWDKTAKVWKE---GSLVYN-------LQAHNA 143 (313)
T ss_dssp ------------------CC-CEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEET---TEEEEE-------EECCSS
T ss_pred ------------------Ccccch-hhcccCEEEEEe--cCCEEEEEeCCCCEEEEcC---CcEEEe-------cccCCC
Confidence 111122 678999999999 57789998 9999999992 333332 567899
Q ss_pred ceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 269 VITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 269 ~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
.+.+++|.| ++ .++++++.||.|++||..... ..+.. .|...+.+++|+|++. +++++
T Consensus 144 ~v~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~------~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~ 203 (313)
T 3odt_A 144 SVWDAKVVSFSE-NKFLTASADKTIKLWQNDKVI------KTFSG------------IHNDVVRHLAVVDDGH-FISCSN 203 (313)
T ss_dssp CEEEEEEEETTT-TEEEEEETTSCEEEEETTEEE------EEECS------------SCSSCEEEEEEEETTE-EEEEET
T ss_pred ceeEEEEccCCC-CEEEEEECCCCEEEEecCceE------EEEec------------cCcccEEEEEEcCCCe-EEEccC
Confidence 999999999 66 999999999999999944321 11111 1567899999999998 66655
Q ss_pred cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 347 YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
++.|++||++. ++++..+..|...+ ++++|+|++ .|++++.||.|++||+.++ +....+..|
T Consensus 204 dg~i~i~d~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~-~l~~~~~dg~v~iwd~~~~-~~~~~~~~~ 265 (313)
T 3odt_A 204 DGLIKLVDMHT-GDVLRTYEGHESFV---------------YCIKLLPNG-DIVSCGEDRTVRIWSKENG-SLKQVITLP 265 (313)
T ss_dssp TSEEEEEETTT-CCEEEEEECCSSCE---------------EEEEECTTS-CEEEEETTSEEEEECTTTC-CEEEEEECS
T ss_pred CCeEEEEECCc-hhhhhhhhcCCceE---------------EEEEEecCC-CEEEEecCCEEEEEECCCC-ceeEEEecc
Confidence 59999999986 78888888888765 689999999 5889999999999999999 778889999
Q ss_pred CCcceeeeeccCCcceec
Q 012721 427 KNENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~ 444 (457)
..++.+++|+|++.....
T Consensus 266 ~~~i~~~~~~~~~~~~~~ 283 (313)
T 3odt_A 266 AISIWSVDCMSNGDIIVG 283 (313)
T ss_dssp SSCEEEEEECTTSCEEEE
T ss_pred CceEEEEEEccCCCEEEE
Confidence 999999999999985443
No 57
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-34 Score=270.64 Aligned_cols=294 Identities=13% Similarity=0.192 Sum_probs=213.8
Q ss_pred eEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeecc-CCcccccccccccc
Q 012721 35 VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS-HEPEFDYLKSLEIE 113 (457)
Q Consensus 35 V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~ 113 (457)
+.+++|++ ..+++++.||.|++|++.+++. ...+.. |.
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~---------------------------~~~~~~~~~------------ 134 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSV---------------------------SALAETDES------------ 134 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCE---------------------------EEEEECCTT------------
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcE---------------------------eEeeecCCC------------
Confidence 45577774 5577888999999999987763 223333 55
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.+++| ++++.+|++++.||.|++||+.+++....+. .....+.+++|. +..+... ..+
T Consensus 135 ~~v~~v~~--s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~~-------------~~d 195 (401)
T 4aez_A 135 TYVASVKW--SHDGSFLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSWN---RHVLSSG-------------SRS 195 (401)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEEE---TTEEEEE-------------ETT
T ss_pred CCEEEEEE--CCCCCEEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEEC---CCEEEEE-------------cCC
Confidence 78999999 7899999999999999999999887766554 334457777772 2222211 135
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
+.+++||+.... .....+ .+|...|.+++|+|++.+|++| .|+.|++||++ .+..... +..|...|.+
T Consensus 196 g~i~i~d~~~~~--~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~-------~~~~~~~v~~ 264 (401)
T 4aez_A 196 GAIHHHDVRIAN--HQIGTL-QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDAR-SSIPKFT-------KTNHNAAVKA 264 (401)
T ss_dssp SEEEEEETTSSS--CEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-CSSEEEE-------ECCCSSCCCE
T ss_pred CCEEEEecccCc--ceeeEE-cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCC-CCCccEE-------ecCCcceEEE
Confidence 689999997432 233334 7899999999999999999999 99999999999 4444433 5678999999
Q ss_pred EEEecCCccEEEEEc--cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c
Q 012721 273 AEFHPIYCNLLAYSS--SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y 347 (457)
Q Consensus 273 v~~~p~~~~~l~~~~--~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~ 347 (457)
++|+|++..++++++ .|+.|++||+++++.. ..+. +...|.+++|+|++++|++++ +
T Consensus 265 ~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~~--------------~~~~v~~~~~s~~~~~l~~~~g~~d 326 (401)
T 4aez_A 265 VAWCPWQSNLLATGGGTMDKQIHFWNAATGARV----NTVD--------------AGSQVTSLIWSPHSKEIMSTHGFPD 326 (401)
T ss_dssp EEECTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEEE--------------CSSCEEEEEECSSSSEEEEEECTTT
T ss_pred EEECCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEEe--------------CCCcEEEEEECCCCCeEEEEeecCC
Confidence 999998867888866 8999999999987543 2222 246799999999999999843 5
Q ss_pred CcEEEEeccCCCCcee--EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 348 MNLKLWDIRMDSTPVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
|.|++||+.. ++... .+.+|...+ ++++|+|++.+|++++.||.|++|++.+++........
T Consensus 327 g~i~v~~~~~-~~~~~~~~~~~h~~~v---------------~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 390 (401)
T 4aez_A 327 NNLSIWSYSS-SGLTKQVDIPAHDTRV---------------LYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPIPI 390 (401)
T ss_dssp CEEEEEEEET-TEEEEEEEEECCSSCC---------------CEEEECTTSSEEEEECTTSEEEEEECCC----------
T ss_pred CcEEEEecCC-ccceeEEEecCCCCCE---------------EEEEECCCCCEEEEEeCCCcEEEEECCCCccccccccc
Confidence 9999999975 44433 355676654 68999999999999999999999999998544444444
Q ss_pred CCCcceee
Q 012721 426 GKNENRKP 433 (457)
Q Consensus 426 ~~~~v~~~ 433 (457)
+..+...+
T Consensus 391 ~~~~~~~i 398 (401)
T 4aez_A 391 TKTPSSSI 398 (401)
T ss_dssp --------
T ss_pred cCCCccce
Confidence 44444443
No 58
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.2e-34 Score=265.48 Aligned_cols=297 Identities=13% Similarity=0.154 Sum_probs=220.9
Q ss_pred ccCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 30 QDVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 30 ~h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
.|.++|++++|+|+ ..++++++.++.|+||++.+++. +..+..|..
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~---------------------------~~~~~~~~~--- 65 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGE---------------------------IRLLQSYVD--- 65 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGC---------------------------EEEEEEEEC---
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcE---------------------------EEeeeeccc---
Confidence 48999999999984 45666666677999999986653 122332210
Q ss_pred ccccccccCcEEEEEEEecCC--CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 106 YLKSLEIEEKINRVRWCAAPN--GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~--~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..+...|.+++|.|... +.+|++++.|+.|++||+.+++....+
T Consensus 66 ----~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~------------------------------ 111 (366)
T 3k26_A 66 ----ADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHY------------------------------ 111 (366)
T ss_dssp ----SCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEE------------------------------
T ss_pred ----cCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeee------------------------------
Confidence 01227899999965322 679999999999999999887654331
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
.+|...|.+++|+| ++.+|+++ .|+.|++||++ .++....+ .
T Consensus 112 -------------------------------~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~----~ 155 (366)
T 3k26_A 112 -------------------------------VGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ-TDTLVAIF----G 155 (366)
T ss_dssp -------------------------------ESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT-TTEEEEEE----C
T ss_pred -------------------------------cCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee-cCeEEEEe----c
Confidence 57889999999999 99999999 99999999998 55555442 1
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccc-----------ccccCcccceeccccce
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDA-----------AESHGSKSFFTEIIASI 330 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~h~~~v 330 (457)
.+.+|...|.+++|+|++ .+|++++.||.|++||+++++............ ...........+|...|
T Consensus 156 ~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp STTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred ccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 136799999999999999 999999999999999999865331100000000 00000112234488999
Q ss_pred EEEEEccCCCeEEEEec-CcEEEEeccCCCC-------------ceeEeeeccccccccccccCCCCccccceEEEcCC-
Q 012721 331 SDIKFANDGQHLLSRDY-MNLKLWDIRMDST-------------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGD- 395 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d- 395 (457)
.+++|+ +++|++++. +.|++||++.... .+..+..|...+ .+++|+|+
T Consensus 235 ~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~ 297 (366)
T 3k26_A 235 DCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDI---------------WYMRFSMDF 297 (366)
T ss_dssp CEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCS---------------SCCCCEECT
T ss_pred EEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcE---------------EEEEEcCCC
Confidence 999999 778888864 9999999975322 245555555543 68999999
Q ss_pred -CcEEEEEeCCCcEEEEecCCCCc---eeeEEecC--CCcceeeeeccCCcceec
Q 012721 396 -GLHFATGSYSNLLRIFSHGVGSA---GGITVEAG--KNENRKPILQAAPRARRS 444 (457)
Q Consensus 396 -~~~l~s~~~dg~i~iw~~~~~~~---~~~~~~~~--~~~v~~~~~~p~~~~~~~ 444 (457)
+++|++|+.||.|++||+.+++. ....+.+| ..+|.+++|+|++....+
T Consensus 298 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s 352 (366)
T 3k26_A 298 WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIA 352 (366)
T ss_dssp TSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred CCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEE
Confidence 99999999999999999998742 33467787 799999999999987776
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.9e-34 Score=309.30 Aligned_cols=359 Identities=14% Similarity=0.175 Sum_probs=260.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|.+++|+|++++||+|+.||+|+|||+.+++ .+..+.+|.
T Consensus 655 ~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~---------------------------~~~~~~~~~-------- 699 (1249)
T 3sfz_A 655 AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK---------------------------LVHTYDEHS-------- 699 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc---------------------------eEEEEcCCC--------
Confidence 489999999999999999999999999999998776 456788888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC---------
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP--------- 180 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 180 (457)
..|.+++|.|..++.++++++.|+.|++||+.+++....... ....+.+++|++....++......
T Consensus 700 ----~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~ 774 (1249)
T 3sfz_A 700 ----EQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-HTNSVNHCRFSPDDELLASCSADGTLRLWDVRS 774 (1249)
T ss_dssp ----SCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-CSSCEEEEEECSSTTEEEEEESSSEEEEEEGGG
T ss_pred ----CcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-CCCCEEEEEEecCCCEEEEEECCCeEEEEeCCC
Confidence 889999995444677899999999999999999887665543 345588888877544333322211
Q ss_pred ----------------------------CceeccCCcc---ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC
Q 012721 181 ----------------------------SFAHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD 229 (457)
Q Consensus 181 ----------------------------~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 229 (457)
...+.+++.. ..++.+.+|+.... .....+..+|...|.+++|+|+
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~~~~~sp~ 851 (1249)
T 3sfz_A 775 ANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQYCDFSPY 851 (1249)
T ss_dssp TEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCCEEEECSS
T ss_pred CcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceEEEEEcCC
Confidence 1122233331 22346777777543 2333343689999999999999
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee-----
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC----- 303 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~----- 303 (457)
+.+++++ .|+.|++||+. .+..... +.+|...|.+++|+|++ .+|++++.||.|++||+.+....
T Consensus 852 ~~~l~~~~~dg~v~vwd~~-~~~~~~~-------~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~~~~~~~~~~~ 922 (1249)
T 3sfz_A 852 DHLAVIALSQYCVELWNID-SRLKVAD-------CRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETKKVCKNSAIVL 922 (1249)
T ss_dssp TTEEEEECSSSCEEEEETT-TTEEEEE-------ECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHHHHHSCCSSSE
T ss_pred CCEEEEEeCCCeEEEEEcC-CCceeee-------cCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEccccceeeeecc
Confidence 9999999 99999999999 5555543 57899999999999999 99999999999999997642100
Q ss_pred -----------------------------------------------------------ccccccccccccccCccccee
Q 012721 304 -----------------------------------------------------------DHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 304 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~ 324 (457)
...+.++.. ........+.
T Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~--~~~~~~~~~~ 1000 (1249)
T 3sfz_A 923 KQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PNNRVFSSGV 1000 (1249)
T ss_dssp EEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEET--TTTSCEEECC
T ss_pred cceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEc--CCCceeeecc
Confidence 000011111 0111223456
Q ss_pred ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccc-------------------cccC----
Q 012721 325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLC-------------------DLYN---- 380 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~---- 380 (457)
+|...|.+++|+|+|++|++++. +.|++||+.. ++... ...|...+.... +...
T Consensus 1001 ~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~-~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~ 1078 (1249)
T 3sfz_A 1001 GHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQT-GDYVF-LQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIE 1078 (1249)
T ss_dssp CCSSCCCCEEECSSSSCEEEECSSSBEEEEETTT-TEEEC-CBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCC
T ss_pred cCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CceEE-EecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCcee
Confidence 78899999999999999998865 9999999864 33221 112221111000 0000
Q ss_pred ---CCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 381 ---NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 381 ---~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
......+++++|+||+++|++++.|++|++||+.++ .....+.+|..+|.+++|+|++...++|
T Consensus 1079 ~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~-~~~~~l~~h~~~v~~~~~s~dg~~lat~ 1145 (1249)
T 3sfz_A 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLL-SPLHELKGHNGCVRCSAFSLDGILLATG 1145 (1249)
T ss_dssp EEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSS-SCSBCCCCCSSCEEEEEECSSSSEEEEE
T ss_pred EEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCc-ceeeeeccCCCcEEEEEECCCCCEEEEE
Confidence 001112478999999999999999999999999998 6788899999999999999999877773
No 60
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=290.69 Aligned_cols=160 Identities=11% Similarity=0.146 Sum_probs=120.2
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|..+|.+++|+| |++||+++.|++|+|||+.+++. +..+. |.
T Consensus 55 ~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~---------------------------~~~~~-~~------- 98 (902)
T 2oaj_A 55 LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKV---------------------------LTTVF-VP------- 98 (902)
T ss_dssp CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSE---------------------------EEEEE-CS-------
T ss_pred cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcE---------------------------EEEEc-CC-------
Confidence 34788999999999 88999999999999999987653 33343 44
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEe----------ecCCCceeeeeeccccccccccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKE----------MDHFPFVSSENTLLAEKNFMNEHN 178 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 178 (457)
+.|++++| +|++++|++|+.||+|++||+.+++...... ......|.+++|++.++..+..+.
T Consensus 99 -----~~V~~v~~--sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~ 171 (902)
T 2oaj_A 99 -----GKITSIDT--DASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY 171 (902)
T ss_dssp -----SCEEEEEC--CTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC
T ss_pred -----CCEEEEEE--CCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe
Confidence 67999999 7899999999999999999999886532111 112345778888875543332221
Q ss_pred CCCceeccCCccccccceEEEeccCccccccceeec-----------------cCCCCCeeEEEeCCCCCEEEEe-CCCe
Q 012721 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYP-----------------HAHDFNINSISNNSDCETFVSA-DDLR 240 (457)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------------~~h~~~v~~~~~~~~~~~l~~~-~d~~ 240 (457)
.++.+ +||++... +++.+. ..|...|.+++|+|+|.+|+++ .|+.
T Consensus 172 -------------~dg~v-lWd~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~ 234 (902)
T 2oaj_A 172 -------------EYVTL-TYSLVENE---IKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS 234 (902)
T ss_dssp -------------SSCEE-EEETTTTE---EEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC
T ss_pred -------------CCCcE-EEECCCCc---eEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe
Confidence 24578 99997542 333331 2346789999999999999999 9999
Q ss_pred EEEEEcCC
Q 012721 241 INLWNLEI 248 (457)
Q Consensus 241 i~iwd~~~ 248 (457)
|++||++.
T Consensus 235 i~lWd~~~ 242 (902)
T 2oaj_A 235 LVFWDANS 242 (902)
T ss_dssp EEEEETTT
T ss_pred EEEEECCC
Confidence 99999973
No 61
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=9.9e-34 Score=262.53 Aligned_cols=293 Identities=10% Similarity=0.089 Sum_probs=206.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCC-------eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGG-------RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg-------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
.-+|+|++|+||+++||+|+.+. .|+||+++..... ....+ .......|.+|.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~-----~~~~~------------~~~~~~~l~~~~--- 73 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDT-----EKEQF------------HILSEFALEDND--- 73 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSS-----HHHHE------------EEEEEEECCTTS---
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcc-----eeeee------------eeeeEEEccCCC---
Confidence 34899999999999999987533 5999999866531 00000 001122456666
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEe-----------eCCCeEEEEEecccceeE--EEeecC------CCceeeee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILS-----------TNDKTIKLWKVRDQKVKK--IKEMDH------FPFVSSEN 165 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~-----------s~d~~i~vw~~~~~~~~~--~~~~~~------~~~~~~~~ 165 (457)
..|.++++ +++.++++ +.|+.+++|++....... ...... ...+..++
T Consensus 74 ---------~~v~s~~~----~~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (365)
T 4h5i_A 74 ---------DSPTAIDA----SKGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVY 140 (365)
T ss_dssp ---------CCCCEEEE----ETTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEE
T ss_pred ---------CceEEEEe----CCCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEE
Confidence 67888877 23455554 467889999987653221 111111 01123334
Q ss_pred eccccccccccCCCCCceeccCCcc------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCC
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEW------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDL 239 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~ 239 (457)
| +++|.+ ..++.+++||.++. +++..+ .|...|.+++|+|+|++++++.++
T Consensus 141 f------------------SpDg~~la~as~~~d~~i~iwd~~~~---~~~~~~--~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 141 I------------------SREGTVAAIASSKVPAIMRIIDPSDL---TEKFEI--ETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp E------------------CTTSSCEEEEESCSSCEEEEEETTTT---EEEEEE--ECSSCCCEEEECTTSSEEEEECSS
T ss_pred E------------------cCCCCEEEEEECCCCCEEEEeECCCC---cEEEEe--CCCCceEEEEEccCCceEEeccce
Confidence 3 444442 12458999999753 334433 477889999999999999999555
Q ss_pred eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC----eEEEEEccCCeeecccccccccccc
Q 012721 240 RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAE 315 (457)
Q Consensus 240 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg----~i~lwd~~~~~~~~~~~~~~~~~~~ 315 (457)
.+.+|+.......... ....|...|.+++|+|++ .++++++.|+ .+++||+.........
T Consensus 198 ~~~~~~~~~~~~~~~~------~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~--------- 261 (365)
T 4h5i_A 198 SLEVISTVTGSCIARK------TDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLR--------- 261 (365)
T ss_dssp CEEEEETTTCCEEEEE------CCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEE---------
T ss_pred eEEEEEeccCcceeee------ecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceeccee---------
Confidence 6667766633333322 246788999999999999 9999998887 6888998775432110
Q ss_pred ccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEe-eeccccccccccccCCCCccccceEEEc
Q 012721 316 SHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATF-KIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (457)
Q Consensus 316 ~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s 393 (457)
...+.+|...|++++|+|+|++||+|+. +.|+|||+++ ++++..+ .+|...+ ++++|+
T Consensus 262 ----~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~-~~~~~~~~~gH~~~V---------------~~v~fS 321 (365)
T 4h5i_A 262 ----SKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKD-LSMSKIFKQAHSFAI---------------TEVTIS 321 (365)
T ss_dssp ----EEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTT-TEEEEEETTSSSSCE---------------EEEEEC
T ss_pred ----eeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCC-CcEEEEecCcccCCE---------------EEEEEC
Confidence 1124567789999999999999999875 9999999986 7777775 6888865 799999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCC
Q 012721 394 GDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 394 ~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|||++||+|+.|++|+||++...
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999765
No 62
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-33 Score=271.80 Aligned_cols=303 Identities=13% Similarity=0.266 Sum_probs=233.2
Q ss_pred cccCCc-eEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDI-VSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~-V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|.+. +.++.|+ +++|++|+.||+|++||+.+++ .+..+.+|.
T Consensus 118 ~~h~~~v~~~~~~~--~~~l~sgs~dg~i~vwd~~~~~---------------------------~~~~~~~h~------ 162 (464)
T 3v7d_B 118 RGHMTSVITCLQFE--DNYVITGADDKMIRVYDSINKK---------------------------FLLQLSGHD------ 162 (464)
T ss_dssp ECCSSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS------
T ss_pred cCCCCCcEEEEEEC--CCEEEEEcCCCcEEEEECCCCc---------------------------EEEEEeCCC------
Confidence 357777 4677775 7899999999999999988765 557788998
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc-cccccccCCCCCceecc
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA-EKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 186 (457)
+.|.+++| ++++ +|++++.|++|++||+.+++....... ....+.+++|.+. ++..+.+.
T Consensus 163 ------~~V~~l~~--~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~s~--------- 223 (464)
T 3v7d_B 163 ------GGVWALKY--AHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTG--------- 223 (464)
T ss_dssp ------SCEEEEEE--CSTT-EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEEEE---------
T ss_pred ------cCEEEEEE--cCCC-EEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEEEE---------
Confidence 88999999 5666 999999999999999999876655542 3455777777752 22222211
Q ss_pred CCccccccceEEEeccCccccc--------------------cceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721 187 HLEWTENMATKIANVGNSVHAR--------------------CQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~--------------------~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd 245 (457)
..++.+++||+....... ....+ .+|...|.++ ++++++++++ .|+.|++||
T Consensus 224 ----s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd 296 (464)
T 3v7d_B 224 ----SRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL-RGHMASVRTV--SGHGNIVVSGSYDNTLIVWD 296 (464)
T ss_dssp ----ETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE-CCCSSCEEEE--EEETTEEEEEETTSCEEEEE
T ss_pred ----cCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc-cCccceEEEE--cCCCCEEEEEeCCCeEEEEE
Confidence 125689999987643221 12333 7888888887 4678899999 999999999
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE 325 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (457)
++ .++.... +.+|...|.+++|+|++ ++|++|+.||.|++||+++++.. .. +.+
T Consensus 297 ~~-~~~~~~~-------~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~~~----~~-------------~~~ 350 (464)
T 3v7d_B 297 VA-QMKCLYI-------LSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGELM----YT-------------LQG 350 (464)
T ss_dssp TT-TTEEEEE-------ECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EE-------------ECC
T ss_pred CC-CCcEEEE-------ecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCcEE----EE-------------EeC
Confidence 98 5555544 57899999999999999 99999999999999999987543 22 345
Q ss_pred cccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 326 IIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 326 h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
|...|.++.|+ +++|++++. |.|++||++. ........ +...+ ..++|+|++.+|++|+
T Consensus 351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~-~~~~~~~~-~~~~~---------------~~~~~~~~~~~l~~~~- 410 (464)
T 3v7d_B 351 HTALVGLLRLS--DKFLVSAAADGSIRGWDAND-YSRKFSYH-HTNLS---------------AITTFYVSDNILVSGS- 410 (464)
T ss_dssp CSSCEEEEEEC--SSEEEEEETTSEEEEEETTT-CCEEEEEE-CTTCC---------------CEEEEEECSSEEEEEE-
T ss_pred CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCC-Cceeeeec-CCCCc---------------cEEEEEeCCCEEEEec-
Confidence 67899999997 578888764 9999999985 44443332 33222 4689999999999999
Q ss_pred CCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 405 SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 405 dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
||.|++||+.+++.....+..|..++.+++|++.
T Consensus 411 dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~ 444 (464)
T 3v7d_B 411 ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK 444 (464)
T ss_dssp TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETT
T ss_pred CCeEEEEECCCCcEEehhhccCCCcEEEEEecCC
Confidence 8999999999994433347889999999999844
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.5e-33 Score=267.11 Aligned_cols=268 Identities=15% Similarity=0.216 Sum_probs=213.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
..+....|++++++||+|+.||.|+|||+.+++ ....+.+|.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~----------- 139 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL---------------------------QREIDQAHV----------- 139 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE---------------------------EEEETTSSS-----------
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc---------------------------eeeeccccc-----------
Confidence 556666889999999999999999999988665 345667888
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
+.|.+++| ++++.+|++++.|+.|++||+.+++....+
T Consensus 140 -~~v~~~~~--~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~--------------------------------------- 177 (420)
T 3vl1_A 140 -SEITKLKF--FPSGEALISSSQDMQLKIWSVKDGSNPRTL--------------------------------------- 177 (420)
T ss_dssp -SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCCCEEE---------------------------------------
T ss_pred -CccEEEEE--CCCCCEEEEEeCCCeEEEEeCCCCcCceEE---------------------------------------
Confidence 88999999 789999999999999999999877543321
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
.+|...|.+++|+|++++|+++ .|+.|++||++ .++....+... ..+...+.
T Consensus 178 ----------------------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~----~~~~~~v~ 230 (420)
T 3vl1_A 178 ----------------------IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG-TGTTIHTFNRK----ENPHDGVN 230 (420)
T ss_dssp ----------------------ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEEECBT----TBTTCCEE
T ss_pred ----------------------cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC-CCceeEEeecC----CCCCCCcc
Confidence 5789999999999999999999 99999999998 55555554221 22334444
Q ss_pred E---------------------EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce
Q 012721 272 S---------------------AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI 330 (457)
Q Consensus 272 ~---------------------v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 330 (457)
+ ++|+|++ ++|++++.||.|++||+++++... .+ ...|...|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~------------~~~~~~~v 293 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKEQTI----QL------------PSKFTCSC 293 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCCEEE----EE------------CCTTSSCE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCceeE----Ec------------ccccCCCc
Confidence 4 4557888 899999999999999999875331 11 12456789
Q ss_pred EEEEEccCCC-eEEEEec-CcEEEEeccCCCCceeEeeecc-ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc
Q 012721 331 SDIKFANDGQ-HLLSRDY-MNLKLWDIRMDSTPVATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL 407 (457)
Q Consensus 331 ~~~~~s~~g~-~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~ 407 (457)
.+++|+|+++ +|++++. |.|++||++....++..+..|. ..+ ..+ +.+++.+|++++.|+.
T Consensus 294 ~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v---------------~~~-~~~~~~~l~s~~~d~~ 357 (420)
T 3vl1_A 294 NSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPI---------------NNV-YFAAGALFVSSGFDTS 357 (420)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCE---------------EEE-EEETTEEEEEETTTEE
T ss_pred eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCc---------------eEE-EeCCCCEEEEecCCcc
Confidence 9999999998 8888875 9999999987455677777744 332 344 5668899999999999
Q ss_pred EEEEecCCCC--------ceeeEEecCCCcceeeeeccCCc
Q 012721 408 LRIFSHGVGS--------AGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 408 i~iw~~~~~~--------~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
|++|++...+ .....+.+|...+..++|+|++.
T Consensus 358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 398 (420)
T 3vl1_A 358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDE 398 (420)
T ss_dssp EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSS
T ss_pred EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCC
Confidence 9999998742 22445778999999999999998
No 64
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=7.8e-35 Score=275.92 Aligned_cols=279 Identities=14% Similarity=0.147 Sum_probs=212.8
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
+.+++++|+|++++|++|+.||.|++|++.+.+.. ..+..|.
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~---------------------------~~~~~~~----------- 98 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGS---------------------------KMLKRAD----------- 98 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETT---------------------------TTSCSCC-----------
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEeccccee---------------------------eEEecCC-----------
Confidence 44668999999999999999999999998866532 1223332
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
+..+.+. ++++++|++++.|+.|++||+.+++....
T Consensus 99 ---~~~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------------------- 134 (420)
T 3vl1_A 99 ---YTAVDTA-KLQMRRFILGTTEGDIKVLDSNFNLQREI---------------------------------------- 134 (420)
T ss_dssp ---EEEEEEE-CSSSCEEEEEETTSCEEEECTTSCEEEEE----------------------------------------
T ss_pred ---ceEEEEE-ecCCCEEEEEECCCCEEEEeCCCcceeee----------------------------------------
Confidence 4444333 68999999999999999999987654332
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
+.+|...|.+++|+|++++|+++ .|+.|++||++ .++.... +.+|...|.
T Consensus 135 ---------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~-~~~~~~~-------~~~h~~~v~ 185 (420)
T 3vl1_A 135 ---------------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK-DGSNPRT-------LIGHRATVT 185 (420)
T ss_dssp ---------------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TCCCCEE-------EECCSSCEE
T ss_pred ---------------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC-CCcCceE-------EcCCCCcEE
Confidence 15799999999999999999999 99999999998 4544443 578999999
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc-----------ccceeccccceEEEEEccCCC
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-----------KSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~h~~~v~~~~~s~~g~ 340 (457)
+++|+|++ .+|++++.||.|++||+++++.. ..+..+...... ......+...+.+++|+|+++
T Consensus 186 ~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 260 (420)
T 3vl1_A 186 DIAIIDRG-RNVLSASLDGTIRLWECGTGTTI----HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK 260 (420)
T ss_dssp EEEEETTT-TEEEEEETTSCEEEEETTTTEEE----EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE
T ss_pred EEEEcCCC-CEEEEEcCCCcEEEeECCCCcee----EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC
Confidence 99999999 99999999999999999987654 223221100000 001122446677778899999
Q ss_pred eEEEEec-CcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCCC
Q 012721 341 HLLSRDY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~~ 417 (457)
+|++++. |.|++||++. ++.+..+. .|...+ .+++|+|++. +|++|+.||.|++||+.+++
T Consensus 261 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~v---------------~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 261 YVIAGHVSGVITVHNVFS-KEQTIQLPSKFTCSC---------------NSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp EEEEEETTSCEEEEETTT-CCEEEEECCTTSSCE---------------EEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred EEEEEcCCCeEEEEECCC-CceeEEcccccCCCc---------------eeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 9999875 9999999986 55555543 344443 6899999998 99999999999999999986
Q ss_pred ceeeEEec-CCCcceeeeeccCCcceec
Q 012721 418 AGGITVEA-GKNENRKPILQAAPRARRS 444 (457)
Q Consensus 418 ~~~~~~~~-~~~~v~~~~~~p~~~~~~~ 444 (457)
.....+.+ |..++..+.++ ++....+
T Consensus 325 ~~~~~~~~~~~~~v~~~~~~-~~~~l~s 351 (420)
T 3vl1_A 325 CPVGEFLINEGTPINNVYFA-AGALFVS 351 (420)
T ss_dssp SCSEEEEESTTSCEEEEEEE-TTEEEEE
T ss_pred CchhhhhccCCCCceEEEeC-CCCEEEE
Confidence 65677776 67788888555 5544444
No 65
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-33 Score=267.04 Aligned_cols=262 Identities=19% Similarity=0.280 Sum_probs=204.4
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|+||+|+|+|++||+|+.||+|+|||+.+++ .+..+.+|.
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~---------------------------~~~~~~~h~-------- 189 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS-------- 189 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc---------------------------EEEEEeCCC--------
Confidence 478899999999999999999999999999998776 457788998
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.++.| ++.+|++++.|+.+++|+.........
T Consensus 190 ----~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~------------------------------------- 224 (420)
T 4gga_A 190 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA------------------------------------- 224 (420)
T ss_dssp ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE-------------------------------------
T ss_pred ----CceEEEee----CCCEEEEEeCCCceeEeeecccceeeE-------------------------------------
Confidence 78999887 356999999999999999876432211
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
. +.+|...+..+.++|++.+++++ .|+.+++|+..........+ .....|..
T Consensus 225 ----------------------~-~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~----~~~~~~~~ 277 (420)
T 4gga_A 225 ----------------------T-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG 277 (420)
T ss_dssp ----------------------E-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCS----EEECCCSS
T ss_pred ----------------------E-ecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceee----eeecccCC
Confidence 1 16788999999999999999999 99999999998433221110 12567889
Q ss_pred ceEEEEEecCCccEEEEE--ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 269 VITSAEFHPIYCNLLAYS--SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~--~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.|.+++|+|.+..+++++ +.|++|++||+++++.. ..+.. ...+.++.|+|+++.+++++
T Consensus 278 ~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~----~~~~~--------------~~~v~~~~~~~~~~~lv~~s 339 (420)
T 4gga_A 278 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SAVDA--------------HSQVCSILWSPHYKELISGH 339 (420)
T ss_dssp CEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE----EEEEC--------------SSCEEEEEEETTTTEEEEEE
T ss_pred ceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc----eeecc--------------ccceeeeeecCCCCeEEEEE
Confidence 999999999886777664 58999999999998654 22222 35789999999999998753
Q ss_pred ---cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEE
Q 012721 347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITV 423 (457)
Q Consensus 347 ---~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 423 (457)
|+.|++||+.+ ++++..+.+|...+ ++++|+|||++|+||+.|++|+|||+... ......
T Consensus 340 g~~d~~I~iwd~~~-~~~v~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~tvriWdv~~~-~~~~~~ 402 (420)
T 4gga_A 340 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL-DPARRR 402 (420)
T ss_dssp CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCS-SCC---
T ss_pred ecCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC-Cccchh
Confidence 49999999986 88999999998876 79999999999999999999999999876 344444
Q ss_pred ecCCCcceee
Q 012721 424 EAGKNENRKP 433 (457)
Q Consensus 424 ~~~~~~v~~~ 433 (457)
+.+.......
T Consensus 403 ~~~~~~~~~~ 412 (420)
T 4gga_A 403 EREKASAAKS 412 (420)
T ss_dssp ----------
T ss_pred hhccCCcccc
Confidence 5554444333
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-33 Score=303.10 Aligned_cols=283 Identities=17% Similarity=0.222 Sum_probs=233.5
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|++++|+|+|++||+|+.||+|+|||+.+++ .+..+.+|.
T Consensus 613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~---------------------------~~~~~~~h~-------- 657 (1249)
T 3sfz_A 613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE---------------------------KLLDIKAHE-------- 657 (1249)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC---------------------------EEEEECCCS--------
T ss_pred cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCC---------------------------EEEEeccCC--------
Confidence 599999999999999999999999999999998776 456788898
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.+++| ++++++|++++.|+.|++||+.+++.....
T Consensus 658 ----~~v~~~~~--s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~------------------------------------ 695 (1249)
T 3sfz_A 658 ----DEVLCCAF--SSDDSYIATCSADKKVKIWDSATGKLVHTY------------------------------------ 695 (1249)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTCCEEEEE------------------------------------
T ss_pred ----CCEEEEEE--ecCCCEEEEEeCCCeEEEEECCCCceEEEE------------------------------------
Confidence 88999999 789999999999999999999988654432
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.+|...|.+++|+| ++.++++| .|+.|++||++ .+..... +.+|
T Consensus 696 -------------------------~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~-~~~~~~~-------~~~h 742 (1249)
T 3sfz_A 696 -------------------------DEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN-QKECRNT-------MFGH 742 (1249)
T ss_dssp -------------------------ECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETT-SSSEEEE-------ECCC
T ss_pred -------------------------cCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECC-Ccchhhe-------ecCC
Confidence 57888999999999 55688888 99999999999 5555544 5789
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|.+++|+|++ .+|++++.||.|++||+++++... .+...............+...+.+++|+|+|+++++++
T Consensus 743 ~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 743 TNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERK----SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp SSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEE----EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred CCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccc----eecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 9999999999999 999999999999999999875431 11110000000001122345788999999999999998
Q ss_pred cCcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 347 YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
++.+.+||+.. +..+..+. +|...+ .+++|+|++.++++++.||.|++|++.++ .....+.+
T Consensus 818 ~~~v~~~d~~~-~~~~~~~~~~~~~~v---------------~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~ 880 (1249)
T 3sfz_A 818 KNKVLLFDIHT-SGLLAEIHTGHHSTI---------------QYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRG 880 (1249)
T ss_dssp TTEEEEEETTT-CCEEEEEECSSSSCC---------------CEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECC
T ss_pred CCcEEEEEecC-CCceeEEcCCCCCce---------------EEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCC
Confidence 99999999986 55555554 555544 68999999999999999999999999998 77888999
Q ss_pred CCCcceeeeeccCCcceec
Q 012721 426 GKNENRKPILQAAPRARRS 444 (457)
Q Consensus 426 ~~~~v~~~~~~p~~~~~~~ 444 (457)
|..+|.+++|+|++....+
T Consensus 881 h~~~v~~v~~spdg~~l~s 899 (1249)
T 3sfz_A 881 HLSWVHGVMFSPDGSSFLT 899 (1249)
T ss_dssp CSSCEEEEEECTTSSEEEE
T ss_pred CccceEEEEECCCCCEEEE
Confidence 9999999999999987766
No 67
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=4.8e-33 Score=263.52 Aligned_cols=275 Identities=15% Similarity=0.197 Sum_probs=221.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (457)
.++.|+||++ ++||+|. |++|+|||..+++.. .+..+.+|.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~-------------------------~~~~~~~~~------------ 147 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 147 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 4678999975 5888876 899999999988642 223345566
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|++|+| +++|++|++|+.|++|++||+.+++.....
T Consensus 148 ~~V~sv~f--spdg~~lasgs~Dg~v~iWd~~~~~~~~~~---------------------------------------- 185 (420)
T 4gga_A 148 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---------------------------------------- 185 (420)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEEECCCeEEEEEcCCCcEEEEE----------------------------------------
Confidence 78999999 789999999999999999999988654432
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.+|...+.+++++ +.+|++| .|+.+++||.......... +.+|...+..
T Consensus 186 ---------------------~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~-------~~~h~~~~~~ 235 (420)
T 4gga_A 186 ---------------------TSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG 235 (420)
T ss_dssp ---------------------CCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------eCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEE-------ecccccceee
Confidence 5788899988874 6789999 9999999999855555443 6789999999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEE--e-cC
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSR--D-YM 348 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~--~-~~ 348 (457)
+.++|++ .++++++.|+.+++||...++..... ......|...|.+++|+|.+. +++++ + |+
T Consensus 236 ~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~-------------~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~ 301 (420)
T 4gga_A 236 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVP-------------LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 301 (420)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCCSSCSCC-------------SEEECCCSSCEEEEEECTTCTTEEEEEECTTTC
T ss_pred eeecCCC-CeeeeeeccccceEEeecccccccee-------------eeeecccCCceeeeeeCCCcccEEEEEeecCCC
Confidence 9999999 99999999999999999886432111 112345678999999999765 44443 3 49
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecCCCCceeeEEecC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
.|++||+.+ ++++..+..+... .++.|+|++..+++++ .|+.|+|||+.++ +.+..+.+|
T Consensus 302 ~I~iwd~~t-~~~~~~~~~~~~v----------------~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~-~~v~~l~gH 363 (420)
T 4gga_A 302 HIRIWNVCS-GACLSAVDAHSQV----------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGH 363 (420)
T ss_dssp EEEEEETTT-TEEEEEEECSSCE----------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCC
T ss_pred EEEEEeCCc-cccceeeccccce----------------eeeeecCCCCeEEEEEecCCCEEEEEECCCC-cEEEEEcCC
Confidence 999999986 7777777766554 5899999999888765 7999999999999 788899999
Q ss_pred CCcceeeeeccCCcceecccccccccc
Q 012721 427 KNENRKPILQAAPRARRSSLSNLTRGL 453 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~~~~~~~~~~ 453 (457)
.++|.+++|+|++...++ ++.+...
T Consensus 364 ~~~V~~l~~spdg~~l~S--~s~D~tv 388 (420)
T 4gga_A 364 TSRVLSLTMSPDGATVAS--AAADETL 388 (420)
T ss_dssp SSCEEEEEECTTSSCEEE--EETTTEE
T ss_pred CCCEEEEEEcCCCCEEEE--EecCCeE
Confidence 999999999999988887 4444433
No 68
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.6e-33 Score=255.04 Aligned_cols=240 Identities=13% Similarity=0.180 Sum_probs=196.7
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (457)
..+..++.+|. +.|.+++| +++ +++|++++.|++|++|++........
T Consensus 7 ~~l~~~l~gH~------------~~V~~l~~--~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~----------------- 55 (319)
T 3frx_A 7 LVLRGTLEGHN------------GWVTSLAT--SAGQPNLLLSASRDKTLISWKLTGDDQKFG----------------- 55 (319)
T ss_dssp EEEEEEECCCS------------SCEEEEEE--CSSCTTEEEEEETTSEEEEEEEEEETTEEE-----------------
T ss_pred EEEEEEEcccc------------ceEEEEEc--cCCCccEEEEecCCccEEEecCCCCCcccc-----------------
Confidence 34667889999 88999999 554 47999999999999999875432110
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI 248 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~ 248 (457)
.+++.+ .+|...|.+++|+|++++|++| .|++|++||++
T Consensus 56 --------------------------------------~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~- 95 (319)
T 3frx_A 56 --------------------------------------VPVRSF-KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA- 95 (319)
T ss_dssp --------------------------------------EEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-
T ss_pred --------------------------------------ccceEE-eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC-
Confidence 112222 6899999999999999999999 99999999998
Q ss_pred CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (457)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (457)
.++.... +.+|...|.+++|+|++ .+|++|+.|++|++||++.... . .+.+|..
T Consensus 96 ~~~~~~~-------~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~-----~-------------~~~~h~~ 149 (319)
T 3frx_A 96 TGETYQR-------FVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCL-----A-------------TLLGHND 149 (319)
T ss_dssp TTEEEEE-------EECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEE-----E-------------EECCCSS
T ss_pred CCCeeEE-------EccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeE-----E-------------EEeccCC
Confidence 5555544 67899999999999999 9999999999999999975321 1 1345778
Q ss_pred ceEEEEEccCC------CeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 329 SISDIKFANDG------QHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 329 ~v~~~~~s~~g------~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
.|.++.|+|.+ .+|++++. +.|++||++. .+....+.+|...+ .+++|+|++++|++
T Consensus 150 ~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~h~~~v---------------~~~~~sp~g~~l~s 213 (319)
T 3frx_A 150 WVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-FQIEADFIGHNSNI---------------NTLTASPDGTLIAS 213 (319)
T ss_dssp CEEEEEECCC------CCEEEEEETTSCEEEEETTT-TEEEEEECCCCSCE---------------EEEEECTTSSEEEE
T ss_pred cEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc-chhheeecCCCCcE---------------EEEEEcCCCCEEEE
Confidence 99999999854 47888764 9999999985 67777888888765 68999999999999
Q ss_pred EeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 402 GSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 402 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
|+.||.|++||+.++ +....+.. ..++.+++|+|++...+.+
T Consensus 214 ~~~dg~i~iwd~~~~-~~~~~~~~-~~~v~~~~~sp~~~~la~~ 255 (319)
T 3frx_A 214 AGKDGEIMLWNLAAK-KAMYTLSA-QDEVFSLAFSPNRYWLAAA 255 (319)
T ss_dssp EETTCEEEEEETTTT-EEEEEEEC-CSCEEEEEECSSSSEEEEE
T ss_pred EeCCCeEEEEECCCC-cEEEEecC-CCcEEEEEEcCCCCEEEEE
Confidence 999999999999988 56666665 4689999999999877654
No 69
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=259.42 Aligned_cols=285 Identities=14% Similarity=0.153 Sum_probs=216.9
Q ss_pred cccCCceEEEEECCC---CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~---~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..|.+.|++++|+|+ |++||+|+.||.|+||++.+.... ....+.+|.
T Consensus 36 ~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~-------------------------~~~~~~~h~---- 86 (368)
T 3mmy_A 36 SSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQT-------------------------IPKAQQMHT---- 86 (368)
T ss_dssp SCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCE-------------------------EEEEEEECS----
T ss_pred cCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCce-------------------------eEEEecccc----
Confidence 359999999999999 699999999999999999873321 335678888
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|.+++| ++++++|++++.|+.|++||+.+++....
T Consensus 87 --------~~v~~~~~--~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--------------------------------- 123 (368)
T 3mmy_A 87 --------GPVLDVCW--SDDGSKVFTASCDKTAKMWDLSSNQAIQI--------------------------------- 123 (368)
T ss_dssp --------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEE---------------------------------
T ss_pred --------CCEEEEEE--CcCCCEEEEEcCCCcEEEEEcCCCCceee---------------------------------
Confidence 88999999 78999999999999999999998765432
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEe--CCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISN--NSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
..|...|.+++| +|++.+|+++ .|+.|++||++ .++....+
T Consensus 124 -----------------------------~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~------ 167 (368)
T 3mmy_A 124 -----------------------------AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR-SSNPMMVL------ 167 (368)
T ss_dssp -----------------------------EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSS-CSSCSEEE------
T ss_pred -----------------------------ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECC-CCcEEEEE------
Confidence 468889999999 8999999999 99999999998 45555442
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe-
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH- 341 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~- 341 (457)
..+ ..+.++.+.+ ..+++++.++.+.+||++....... ... ..+...+.++.+.++...
T Consensus 168 -~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~~~~~~ 227 (368)
T 3mmy_A 168 -QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIE------------SPLKHQHRCVAIFKDKQNK 227 (368)
T ss_dssp -ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECC------------CSCSSCEEEEEEEECTTSC
T ss_pred -ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hcc------------ccccCCCceEEEcccCCCC
Confidence 323 3566666664 5688888999999999987643211 111 111234566666665544
Q ss_pred ---EEEEec-CcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 342 ---LLSRDY-MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 342 ---l~s~~~-~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+++++. +.|++||++... ..+..+..|........ .......+++++|+|++++|++++.||.|++||+.+
T Consensus 228 ~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 228 PTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTS---APQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp EEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----C---CCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTT
T ss_pred CCeEEEecCCCcEEEEecCCCCccccceeeeeeeccccccc---ccccccceEEEEEecCCCEEEEEccCCeEEEEECCC
Confidence 777764 999999998522 45667777664210000 000001237999999999999999999999999999
Q ss_pred CCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 416 GSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
+ +....+.+|..++.+++|+|++...++|
T Consensus 305 ~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~ 333 (368)
T 3mmy_A 305 R-TKLKTSEQLDQPISACCFNHNGNIFAYA 333 (368)
T ss_dssp T-EEEEECCCCSSCEEEEEECTTSSCEEEE
T ss_pred C-cEEEEecCCCCCceEEEECCCCCeEEEE
Confidence 8 7788899999999999999999887774
No 70
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.2e-32 Score=253.39 Aligned_cols=285 Identities=15% Similarity=0.222 Sum_probs=208.9
Q ss_pred ccceeeeeccCCccccccccccccCcEEEEEEEe----cCCCCEEEEeeCCCeEEEEEecccce-----eEEEee-cCCC
Q 012721 90 EYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQKV-----KKIKEM-DHFP 159 (457)
Q Consensus 90 ~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~----s~~~~~l~s~s~d~~i~vw~~~~~~~-----~~~~~~-~~~~ 159 (457)
.......+++|. +.|++++|.+ .+++.+|++|+.|++|++||+..++. .....+ ....
T Consensus 10 ~~~~~~~l~gH~------------~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 10 QVVKRGILEGHS------------DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEEEECCS------------SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSS
T ss_pred Eeeeeeeeccch------------hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCC
Confidence 344667889999 8899999922 24788999999999999999975431 111122 2334
Q ss_pred ceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC
Q 012721 160 FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD 238 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d 238 (457)
.|.+++|.+....++... .++.+++||++.. +++..+ .+|...|.+++|+|++++|+++ .|
T Consensus 78 ~V~~~~~~~~~~~l~s~s--------------~D~~v~lwd~~~~---~~~~~~-~~h~~~v~~v~~sp~~~~l~s~~~d 139 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSS--------------WDKTLRLWDLRTG---TTYKRF-VGHQSEVYSVAFSPDNRQILSAGAE 139 (343)
T ss_dssp CEEEEEECSSTTEEEEEE--------------TTSEEEEEETTSS---CEEEEE-ECCCSCEEEEEECSSTTEEEEEETT
T ss_pred ceEEEEECCCCCEEEEEc--------------CCCcEEEEECCCC---cEEEEE-cCCCCcEEEEEECCCCCEEEEEcCC
Confidence 577777765433222221 2668999999753 445555 7899999999999999999999 99
Q ss_pred CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc---------cEEEEEccCCeEEEEEccCCeeecccccc
Q 012721 239 LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC---------NLLAYSSSRGFVRLVDMRQSALCDHSARI 309 (457)
Q Consensus 239 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~---------~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 309 (457)
+.|++||+. ....... ....+|...|.+++|+|++. .+|++++.||.|++||... +.. .
T Consensus 140 ~~i~~wd~~-~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~----~- 207 (343)
T 2xzm_R 140 REIKLWNIL-GECKFSS-----AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF-QIR----Y- 207 (343)
T ss_dssp SCEEEEESS-SCEEEEC-----CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT-EEE----E-
T ss_pred CEEEEEecc-CCceeee-----ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC-cee----E-
Confidence 999999998 3332221 12357889999999999852 5899999999999999443 111 1
Q ss_pred ccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (457)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (457)
.+.+|...|.+++|+|+|++|++|+. +.|++||+.....+...+. +...+ .
T Consensus 208 ------------~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v---------------~ 259 (343)
T 2xzm_R 208 ------------TFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTI---------------N 259 (343)
T ss_dssp ------------EEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCE---------------E
T ss_pred ------------EEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcE---------------E
Confidence 23567789999999999999999875 9999999954344444443 22222 6
Q ss_pred eEEEcCCCcEEEEEeCCCcEEEEecCCCCcee-eEEe-----------cCCCcceeeeeccCCcceecc
Q 012721 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVE-----------AGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~-----------~~~~~v~~~~~~p~~~~~~~~ 445 (457)
+++|+|++.+++++ .|+.|++|++.+++... ..+. +|...+.+++|+|++...++|
T Consensus 260 ~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg 327 (343)
T 2xzm_R 260 QIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAG 327 (343)
T ss_dssp EEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEE
T ss_pred EEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEe
Confidence 89999999988755 57889999998873321 1333 788899999999999888773
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=9.4e-33 Score=260.31 Aligned_cols=300 Identities=17% Similarity=0.254 Sum_probs=219.6
Q ss_pred cccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCcccee-----eeeccCCc
Q 012721 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYK-----TEFQSHEP 102 (457)
Q Consensus 29 ~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~h~~ 102 (457)
..|.+.|++++|+| ++++||+|+.||.|+||++.+++..... ..... ....+|.
T Consensus 40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~- 99 (408)
T 4a11_B 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYY-------------------TCKAVCSIGRDHPDVHR- 99 (408)
T ss_dssp CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCE-------------------EECEEEEECTTCTTCCS-
T ss_pred eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceE-------------------eccccccccccccccCC-
Confidence 34999999999999 9999999999999999999887643000 00000 0112455
Q ss_pred cccccccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 103 EFDYLKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
..|.+++| ++ ++.+|++++.|+.|++||+.+++.....
T Consensus 100 -----------~~v~~~~~--~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---------------------------- 138 (408)
T 4a11_B 100 -----------YSVETVQW--YPHDTGMFTSSSFDKTLKVWDTNTLQTADVF---------------------------- 138 (408)
T ss_dssp -----------SCEEEEEE--CTTCTTCEEEEETTSEEEEEETTTTEEEEEE----------------------------
T ss_pred -----------CcEEEEEE--ccCCCcEEEEEeCCCeEEEeeCCCCccceec----------------------------
Confidence 88999999 56 7779999999999999999987655432
Q ss_pred ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe-CCCeEEEEEcCCCcceeeeee
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEISDQCFNIVD 257 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (457)
.+...+.++.++| ++.+++++ .|+.|++||++ .+.....
T Consensus 139 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~-- 181 (408)
T 4a11_B 139 ----------------------------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLK-SGSCSHI-- 181 (408)
T ss_dssp ----------------------------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESS-SSCCCEE--
T ss_pred ----------------------------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCC-Ccceeee--
Confidence 2455788888887 45589998 99999999998 4544443
Q ss_pred cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
+.+|...|.+++|+|++..+|++++.||.|++||++++............ ...........+|...|.+++|+|
T Consensus 182 -----~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 182 -----LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG-KKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp -----ECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTT-CSCCCTTTSSCSCSSCEEEEEECT
T ss_pred -----ecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccccccccc-ccceeeccccccccCceeEEEEcC
Confidence 57799999999999999347999999999999999886532211111111 111222334467889999999999
Q ss_pred CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 338 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 338 ~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
++++|++++. +.|++||++. ++....+..+....... .. ........+..+++++.|+.|++||+.++
T Consensus 256 ~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 324 (408)
T 4a11_B 256 DGLHLLTVGTDNRMRLWNSSN-GENTLVNYGKVCNNSKK-------GL---KFTVSCGCSSEFVFVPYGSTIAVYTVYSG 324 (408)
T ss_dssp TSSEEEEEETTSCEEEEETTT-CCBCCCCCCCCCCCCSS-------CC---CCEECCSSSSCEEEEEETTEEEEEETTTC
T ss_pred CCCEEEEecCCCeEEEEECCC-Cccceeccccccccccc-------cc---eeEEecCCCceEEEEecCCEEEEEECcCC
Confidence 9999999875 9999999986 45444333222111000 00 11222334556777788999999999998
Q ss_pred CceeeEEecCCCcceeeeeccCCcceec
Q 012721 417 SAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 417 ~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
.....+.+|..+|.+++|+|++....+
T Consensus 325 -~~~~~~~~~~~~v~~~~~s~~~~~l~s 351 (408)
T 4a11_B 325 -EQITMLKGHYKTVDCCVFQSNFQELYS 351 (408)
T ss_dssp -CEEEEECCCSSCEEEEEEETTTTEEEE
T ss_pred -cceeeeccCCCeEEEEEEcCCCCEEEE
Confidence 778899999999999999999987776
No 72
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-34 Score=265.22 Aligned_cols=263 Identities=15% Similarity=0.193 Sum_probs=203.9
Q ss_pred cCCceEEEEECCC----CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 31 DVDIVSAIEFDKT----GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 31 h~~~V~~~~~s~~----~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
|...|++++|+|+ +++|++|+.||.|++||+.+++ .+..+.+|.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~---------------------------~~~~~~~~~----- 115 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQ---------------------------CIKHYVGHG----- 115 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCC---------------------------EEEEEESCC-----
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhce---------------------------EeeeecCCC-----
Confidence 6788999999998 6799999999999999988765 456778888
Q ss_pred cccccccCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 107 LKSLEIEEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|.+++| ++ ++.+|++++.|+.|++||+.+++.......
T Consensus 116 -------~~i~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------ 156 (366)
T 3k26_A 116 -------NAINELKF--HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG------------------------------ 156 (366)
T ss_dssp -------SCEEEEEE--CSSCTTEEEEEETTSCEEEEETTTTEEEEEECS------------------------------
T ss_pred -------CcEEEEEE--CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc------------------------------
Confidence 88999999 67 889999999999999999988765443210
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec------
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM------ 258 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~------ 258 (457)
+.+|...|.+++|+|++++|+++ .|+.|++||++ .++....+..
T Consensus 157 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~ 207 (366)
T 3k26_A 157 ----------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN-SKRMMNAIKESYDYNP 207 (366)
T ss_dssp ----------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESC-SHHHHHHHHHHHTCCG
T ss_pred ----------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECC-CCccccccceeEEecC
Confidence 14788899999999999999999 99999999998 3332221100
Q ss_pred ---------------CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccce
Q 012721 259 ---------------KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (457)
Q Consensus 259 ---------------~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
.......|...|.+++|+ + .+|++++.||.|++||+++..... ..+..+.........+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~~~~ 281 (366)
T 3k26_A 208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTILGRF 281 (366)
T ss_dssp GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEEEEE
T ss_pred CCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccc---cccccCCcchheeccc
Confidence 001123488999999999 5 799999999999999998865321 1111111111223456
Q ss_pred eccccceEEEEEccC--CCeEEEEec-CcEEEEeccCCCCc----eeEeeec--cccccccccccCCCCccccceEEEcC
Q 012721 324 TEIIASISDIKFAND--GQHLLSRDY-MNLKLWDIRMDSTP----VATFKIH--EHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 324 ~~h~~~v~~~~~s~~--g~~l~s~~~-~~i~~wd~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
..|...|++++|+|+ +++|++++. |.|++||+.. +++ ...+..| ...+ ++++|+|
T Consensus 282 ~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~v---------------~~~~~s~ 345 (366)
T 3k26_A 282 DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV-EDPHKAKCTTLTHHKCGAAI---------------RQTSFSR 345 (366)
T ss_dssp ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCS-SSGGGCEEEEECCTTCCSCE---------------EEEEECT
T ss_pred cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCC-CCCccccceEEcccccCCce---------------EEEEeCC
Confidence 778889999999999 999999875 9999999985 443 3356666 3333 6999999
Q ss_pred CCcEEEEEeCCCcEEEEecCC
Q 012721 395 DGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~ 415 (457)
++++|++++.||.|++||+.+
T Consensus 346 ~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 346 DSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp TSSEEEEEETTSEEEEEEC--
T ss_pred CCCeEEEEeCCCEEEEEEecC
Confidence 999999999999999999863
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-32 Score=261.10 Aligned_cols=301 Identities=15% Similarity=0.225 Sum_probs=234.0
Q ss_pred ccccCCce-EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIV-SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V-~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...|.+.| .|+.+ +|++|++|+.||+|++||+.+++ .+..+.+|.
T Consensus 114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~---------------------------~~~~~~~h~----- 159 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGK---------------------------CLRTLVGHT----- 159 (445)
T ss_dssp EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCC---------------------------EEEECCCCS-----
T ss_pred ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCc---------------------------EEEEEcCCC-----
Confidence 34588765 65555 58999999999999999998765 456788898
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
+.|.+++| + ++++++++.|++|++||+.+++....... ....+.++.+.. ..++..
T Consensus 160 -------~~v~~~~~--~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~l~s~---------- 215 (445)
T 2ovr_B 160 -------GGVWSSQM--R--DNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--KRVVSG---------- 215 (445)
T ss_dssp -------SCEEEEEE--E--TTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEEE----------
T ss_pred -------CCEEEEEe--c--CCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--CEEEEE----------
Confidence 88999999 3 56999999999999999999877655543 234466666631 111111
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
..++.+++||+... +++..+ .+|...|.++++ ++.++++| .|+.|++||++ .+..... +.+
T Consensus 216 ----s~dg~i~~wd~~~~---~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~-~~~~~~~-------~~~ 277 (445)
T 2ovr_B 216 ----SRDATLRVWDIETG---QCLHVL-MGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPE-TETCLHT-------LQG 277 (445)
T ss_dssp ----ETTSEEEEEESSSC---CEEEEE-ECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGG-GTEEEEE-------ECC
T ss_pred ----eCCCEEEEEECCCC---cEEEEE-cCCcccEEEEEE--CCCEEEEEcCCCEEEEEECC-CCcEeEE-------ecC
Confidence 12568999998753 444555 689999999999 68889998 99999999998 5555544 567
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|...|.+++| ++ .++++++.||.|++||+++++.. .. +.+|...+.++.++ +++|+++
T Consensus 278 ~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~~~----~~-------------~~~~~~~v~~~~~~--~~~l~~~ 335 (445)
T 2ovr_B 278 HTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGNCI----HT-------------LTGHQSLTSGMELK--DNILVSG 335 (445)
T ss_dssp CSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCCSCEEEEEEE--TTEEEEE
T ss_pred CCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCCEE----EE-------------EcCCcccEEEEEEe--CCEEEEE
Confidence 9999999999 66 89999999999999999987543 22 23456778887764 6788888
Q ss_pred e-cCcEEEEeccCCCCceeEeee---ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceee
Q 012721 346 D-YMNLKLWDIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGI 421 (457)
Q Consensus 346 ~-~~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~ 421 (457)
+ ||.|++||++. ++.+..+.. |...+ ++++|+ +.+|++|+.||.|++||+.++ +...
T Consensus 336 ~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~v---------------~~~~~~--~~~l~s~~~dg~v~iwd~~~~-~~~~ 396 (445)
T 2ovr_B 336 NADSTVKIWDIKT-GQCLQTLQGPNKHQSAV---------------TCLQFN--KNFVITSSDDGTVKLWDLKTG-EFIR 396 (445)
T ss_dssp ETTSCEEEEETTT-CCEEEEECSTTSCSSCE---------------EEEEEC--SSEEEEEETTSEEEEEETTTC-CEEE
T ss_pred eCCCeEEEEECCC-CcEEEEEccCCCCCCCE---------------EEEEEC--CCEEEEEeCCCeEEEEECCCC-ceee
Confidence 7 49999999986 788888876 43332 578884 689999999999999999999 5555
Q ss_pred EE-----ecCCCcceeeeeccCCcceecc
Q 012721 422 TV-----EAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 422 ~~-----~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
.+ .+|.+++.+++|+|++...+.|
T Consensus 397 ~~~~~~~~~~~~~v~~~~~s~~~~~la~~ 425 (445)
T 2ovr_B 397 NLVTLESGGSGGVVWRIRASNTKLVCAVG 425 (445)
T ss_dssp EEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred eeeccccCCCCceEEEEEecCCEEEEEEc
Confidence 55 5788999999999998877663
No 74
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=246.85 Aligned_cols=276 Identities=14% Similarity=0.183 Sum_probs=213.4
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (457)
.+++|+||+++ +||+|. |++|+|||+.+++.. ....+.+|.
T Consensus 27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~-------------------------~~~~~~~~~------------ 67 (318)
T 4ggc_A 27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDIL-------------------------QLLQMEQPG------------ 67 (318)
T ss_dssp TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEE-------------------------EEEECCSTT------------
T ss_pred cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEE-------------------------EEEEecCCC------------
Confidence 45789999876 788765 899999999987642 122344565
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|++++| ++++++|++|+.|++|++|++.+++.....
T Consensus 68 ~~V~~v~~--~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~---------------------------------------- 105 (318)
T 4ggc_A 68 EYISSVAW--IKEGNYLAVGTSSAEVQLWDVQQQKRLRNM---------------------------------------- 105 (318)
T ss_dssp CCEEEEEE--CTTSSEEEEEETTSEEEEEETTTTEEEEEE----------------------------------------
T ss_pred CeEEEEEE--CCCCCEEEEEECCCcEEEeecCCceeEEEe----------------------------------------
Confidence 78999999 789999999999999999999988655432
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.+|...+.++.+ ++..++++ .++.+++|+.......... +.+|...+..
T Consensus 106 ---------------------~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 155 (318)
T 4ggc_A 106 ---------------------TSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVAT-------LSGHSQEVCG 155 (318)
T ss_dssp ---------------------ECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEE
T ss_pred ---------------------cCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEE-------EcCccCceEE
Confidence 467777776655 56789999 9999999999855555443 5789999999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE---EEec-C
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL---SRDY-M 348 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~---s~~~-~ 348 (457)
+.+.+++ ++|++++.||.|++||+++++...... .....|...|.++.++|++..++ +++. +
T Consensus 156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 221 (318)
T 4ggc_A 156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPL-------------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDR 221 (318)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCS-------------EEECCCCSCEEEEEECTTSTTEEEEEECTTTC
T ss_pred EEEcCCC-CEEEEEecCcceeEEECCCCcccccce-------------eeecccCCceEEEEecCCCCcEEEEEecCCCC
Confidence 9999999 999999999999999998865321111 11234567899999999876544 3343 9
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEEEecCCCCceeeEEecC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
.|++||... ........ +...+ ..+.|+|++..+++++ .|+.|++||+.++ +....+.+|
T Consensus 222 ~i~lwd~~~-~~~~~~~~-~~~~v---------------~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~-~~~~~l~gH 283 (318)
T 4ggc_A 222 HIRIWNVCS-GACLSAVD-AHSQV---------------CSILWSPHYKELISGHGFAQNQLVIWKYPTM-AKVAELKGH 283 (318)
T ss_dssp EEEEEETTT-CCEEEEEE-CSSCE---------------EEEEEETTTTEEEEEECTTTCCEEEEETTTC-CEEEEECCC
T ss_pred EEEEEeccc-cccccccc-ceeee---------------eeeeecccccceEEEEEcCCCEEEEEECCCC-cEEEEEcCC
Confidence 999999975 44444433 33322 5899999999887655 7999999999999 788899999
Q ss_pred CCcceeeeeccCCcceeccccccccccc
Q 012721 427 KNENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
.++|++++|+|++...++ ++.+...|
T Consensus 284 ~~~V~~l~~spdg~~l~S--~s~D~~v~ 309 (318)
T 4ggc_A 284 TSRVLSLTMSPDGATVAS--AAADETLR 309 (318)
T ss_dssp SSCEEEEEECTTSSCEEE--EETTTEEE
T ss_pred CCCEEEEEEcCCCCEEEE--EecCCeEE
Confidence 999999999999998887 44444433
No 75
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=4.2e-32 Score=249.04 Aligned_cols=240 Identities=16% Similarity=0.240 Sum_probs=200.4
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|.+++|+|++++|++++.||.|++|++.+++.. ....+.+|.
T Consensus 95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-------------------------~~~~~~~~~-------- 141 (337)
T 1gxr_A 95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-------------------------IKAELTSSA-------- 141 (337)
T ss_dssp CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-------------------------EEEEEECSS--------
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-------------------------eeeecccCC--------
Confidence 58899999999999999999999999999999876531 445677777
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.+++| +++++++++++.|+.|++||+.+++.....
T Consensus 142 ----~~i~~~~~--~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~------------------------------------ 179 (337)
T 1gxr_A 142 ----PACYALAI--SPDSKVCFSCCSDGNIAVWDLHNQTLVRQF------------------------------------ 179 (337)
T ss_dssp ----SCEEEEEE--CTTSSEEEEEETTSCEEEEETTTTEEEEEE------------------------------------
T ss_pred ----CceEEEEE--CCCCCEEEEEeCCCcEEEEeCCCCceeeee------------------------------------
Confidence 78999999 789999999999999999999887544321
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..|...|.+++|+|++++|+++ .|+.|++||++ .++....+ .+..
T Consensus 180 -------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~~--------~~~~ 225 (337)
T 1gxr_A 180 -------------------------QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR-EGRQLQQH--------DFTS 225 (337)
T ss_dssp -------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-TTEEEEEE--------ECSS
T ss_pred -------------------------ecccCceEEEEECCCCCEEEEEecCCcEEEEECC-CCceEeee--------cCCC
Confidence 5688899999999999999999 99999999998 45554432 3667
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
.+.+++|+|++ .+|++++.|+.|++||+++++.. . +..|...|.+++|+|++++|++++.
T Consensus 226 ~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~~~-----~-------------~~~~~~~v~~~~~~~~~~~l~~~~~d 286 (337)
T 1gxr_A 226 QIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPDKY-----Q-------------LHLHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp CEEEEEECTTS-SEEEEEETTSCEEEEETTSSCEE-----E-------------ECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEEECCCC-CEEEEEcCCCcEEEEECCCCCeE-----E-------------EcCCccceeEEEECCCCCEEEEecCC
Confidence 89999999999 99999999999999999886421 1 2446788999999999999999875
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+.|++||+.. ++.+... .|...+ .+++|+|++++|++++.||.|++|++.
T Consensus 287 g~i~~~~~~~-~~~~~~~-~~~~~v---------------~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 287 NLLNAWRTPY-GASIFQS-KESSSV---------------LSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SEEEEEETTT-CCEEEEE-ECSSCE---------------EEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CcEEEEECCC-CeEEEEe-cCCCcE---------------EEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9999999986 5555443 344433 689999999999999999999999973
No 76
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.2e-32 Score=248.01 Aligned_cols=239 Identities=14% Similarity=0.143 Sum_probs=188.9
Q ss_pred eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (457)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (457)
..+.+|. +.|.+++| +++|++|++++.|++|++|++.++..
T Consensus 3 ~~~~~h~------------~~V~~~~~--s~~g~~las~s~D~~v~iw~~~~~~~------------------------- 43 (297)
T 2pm7_B 3 VIANAHN------------EMIHDAVM--DYYGKRMATCSSDKTIKIFEVEGETH------------------------- 43 (297)
T ss_dssp EECCSCS------------SCEEEEEE--CTTSSEEEEEETTSCEEEEEBCSSCB-------------------------
T ss_pred eeccCCc------------CceEEEEE--CCCCCEEEEEeCCCEEEEEecCCCCc-------------------------
Confidence 3567787 88999999 79999999999999999999875321
Q ss_pred ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcc
Q 012721 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
+++..+ .+|...|.+++|++ ++++|++| .|++|++||++. +.
T Consensus 44 ---------------------------------~~~~~l-~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~-~~ 88 (297)
T 2pm7_B 44 ---------------------------------KLIDTL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-GR 88 (297)
T ss_dssp ---------------------------------CCCEEE-CCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS-SC
T ss_pred ---------------------------------EEEEEE-ccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC-Cc
Confidence 111222 68999999999986 38999999 999999999983 32
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
...+ ..+.+|...|.+++|+|+ + .+|++++.|+.|++||++.+... . ...+.+|...
T Consensus 89 ~~~~-----~~~~~h~~~v~~v~~~p~~~g-~~l~s~s~d~~v~~wd~~~~~~~----~-----------~~~~~~h~~~ 147 (297)
T 2pm7_B 89 WSQI-----AVHAVHSASVNSVQWAPHEYG-PMLLVASSDGKVSVVEFKENGTT----S-----------PIIIDAHAIG 147 (297)
T ss_dssp BCCC-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEEBCSSSCB----C-----------CEEEECCSSC
T ss_pred eEEE-----EEeecCCCceeEEEeCcCCCC-cEEEEEECCCcEEEEEecCCCce----e-----------eeeeecccCc
Confidence 1111 125679999999999997 6 89999999999999999875311 0 1124567889
Q ss_pred eEEEEEccC-------------CCeEEEEe-cCcEEEEeccCCCC----ceeEeeeccccccccccccCCCCccccceEE
Q 012721 330 ISDIKFAND-------------GQHLLSRD-YMNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (457)
Q Consensus 330 v~~~~~s~~-------------g~~l~s~~-~~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (457)
|.+++|+|+ +++|++|+ |+.|++||++. ++ ....+.+|...+ .+++
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~-~~~~~~~~~~l~~H~~~V---------------~~v~ 211 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS-DAQTYVLESTLEGHSDWV---------------RDVA 211 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEET-TTTEEEEEEEECCCSSCE---------------EEEE
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcC-CCceEEEEEEecCCCCce---------------EEEE
Confidence 999999997 57899887 49999999975 33 456777888765 6999
Q ss_pred EcCCC---cEEEEEeCCCcEEEEecCCCCc--eeeEE--ecCCCcceeeeeccCCcceec
Q 012721 392 VSGDG---LHFATGSYSNLLRIFSHGVGSA--GGITV--EAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 392 ~s~d~---~~l~s~~~dg~i~iw~~~~~~~--~~~~~--~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|+|++ .+|++++.|++|+|||+.++.. ....+ ..|...+.+++|+|++...++
T Consensus 212 ~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las 271 (297)
T 2pm7_B 212 WSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 271 (297)
T ss_dssp ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred ECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEE
Confidence 99984 8999999999999999987521 12233 578899999999999988776
No 77
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1.6e-32 Score=261.13 Aligned_cols=292 Identities=17% Similarity=0.266 Sum_probs=214.4
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|.|++| ++++|++|+.||.|++||+.+++ ....+.+|.
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~---------------------------~~~~~~~h~-------- 173 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLE---------------------------CKRILTGHT-------- 173 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCC---------------------------EEEEECCCS--------
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCe---------------------------EEEEEcCCC--------
Confidence 36678999988 69999999999999999988765 456788898
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.+++| ++++|++|+.||.|++||+.+++....... ....+.++.|.. +.++..
T Consensus 174 ----~~v~~l~~----~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~------------- 229 (435)
T 1p22_A 174 ----GSVLCLQY----DERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNN--GMMVTC------------- 229 (435)
T ss_dssp ----SCEEEEEC----CSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCT--TEEEEE-------------
T ss_pred ----CcEEEEEE----CCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcC--CEEEEe-------------
Confidence 88999988 567999999999999999999887665543 234466666641 111111
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..++.+++||+...........+ .+|...|.+++| +++++++| .|+.|++||++ .++.... +.+|..
T Consensus 230 -s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~-~~~~~~~-------~~~~~~ 297 (435)
T 1p22_A 230 -SKDRSIAVWDMASPTDITLRRVL-VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTS-TCEFVRT-------LNGHKR 297 (435)
T ss_dssp -ETTSCEEEEECSSSSCCEEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-TCCEEEE-------EECCSS
T ss_pred -eCCCcEEEEeCCCCCCceeeeEe-cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECC-cCcEEEE-------EcCCCC
Confidence 13568999999865444333444 789999999999 78899999 99999999998 5555544 567899
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
.|.+++++ + .++++|+.||.|++||+++++.. .. +.+|...|.+++| ++++|++|+.
T Consensus 298 ~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~~~----~~-------------~~~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 298 GIACLQYR--D-RLVVSGSSDNTIRLWDIECGACL----RV-------------LEGHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EE-------------ECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred cEEEEEeC--C-CEEEEEeCCCeEEEEECCCCCEE----EE-------------EeCCcCcEEEEEe--cCCEEEEEeCC
Confidence 99999984 4 78999999999999999987533 22 3456788999999 6889998875
Q ss_pred CcEEEEeccCCCC---------ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 348 MNLKLWDIRMDST---------PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 348 ~~i~~wd~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
|.|++||+.. +. .+..+.+|...+ ++++| ++.+|++++.||.|++||+.+...
T Consensus 356 g~i~vwd~~~-~~~~~~~~~~~~~~~~~~h~~~v---------------~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 356 GKIKVWDLVA-ALDPRAPAGTLCLRTLVEHSGRV---------------FRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCEEEEEHHH-HTSTTSCTTTTEEEEECCCSSCC---------------CCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred CcEEEEECCC-CCCccccccchheeeccCCCCCe---------------EEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 9999999964 33 577777887765 67888 788999999999999999988732
Q ss_pred eeeEEecCCCcceeeeec
Q 012721 419 GGITVEAGKNENRKPILQ 436 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~ 436 (457)
. . ......+...+.|.
T Consensus 418 ~-~-~~~~~~~~~~~~~~ 433 (435)
T 1p22_A 418 A-Q-AEPPRSPSRTYTYI 433 (435)
T ss_dssp ------------------
T ss_pred c-c-cCCCCCCccceeee
Confidence 2 2 22233444444443
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-32 Score=258.84 Aligned_cols=282 Identities=13% Similarity=0.125 Sum_probs=213.1
Q ss_pred ceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 34 IVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 34 ~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
....++++|+...+ ++++.||.|+||++...... ...+..+.+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-----------------------~~~~~~~~~h~----------- 81 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-----------------------DKNVPLVCGHT----------- 81 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-----------------------CTTCCCBCCCS-----------
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-----------------------CCCCceEecCC-----------
Confidence 44568899877544 45788999999998654321 11334577888
Q ss_pred cCcEEEEEEEecC-CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 113 EEKINRVRWCAAP-NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 113 ~~~V~~v~~~~s~-~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
+.|.+++| ++ ++.+|++++.|+.|++|++.++.....
T Consensus 82 -~~V~~~~~--~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~--------------------------------------- 119 (402)
T 2aq5_A 82 -APVLDIAW--CPHNDNVIASGSEDCTVMVWEIPDGGLVLP--------------------------------------- 119 (402)
T ss_dssp -SCEEEEEE--CTTCTTEEEEEETTSEEEEEECCTTCCSSC---------------------------------------
T ss_pred -CCEEEEEe--CCCCCCEEEEEeCCCeEEEEEccCCCCccc---------------------------------------
Confidence 88999999 67 889999999999999999987643210
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCC-CEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDC-ETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
..+++..+ .+|...|.+++|+|++ .+|+++ .|+.|++||++ .++....+. ..+|...
T Consensus 120 --------------~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-----~~~~~~~ 178 (402)
T 2aq5_A 120 --------------LREPVITL-EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG-TGAAVLTLG-----PDVHPDT 178 (402)
T ss_dssp --------------BCSCSEEE-ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETT-TTEEEEEEC-----TTTCCSC
T ss_pred --------------cCCceEEe-cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECC-CCCccEEEe-----cCCCCCc
Confidence 00122222 6899999999999998 689998 99999999999 555554420 1679999
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc-eEEEEEccCCCeEEEE---
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS-ISDIKFANDGQHLLSR--- 345 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~s~~g~~l~s~--- 345 (457)
|.+++|+|++ .+|++++.||.|++||+++++.. ..+. .+|.+. +.++.|+|++++|++|
T Consensus 179 v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~l~~g~~~ 241 (402)
T 2aq5_A 179 IYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVV----AEKD------------RPHEGTRPVHAVFVSEGKILTTGFSR 241 (402)
T ss_dssp EEEEEECTTS-SCEEEEETTSEEEEEETTTTEEE----EEEE------------CSSCSSSCCEEEECSTTEEEEEEECT
T ss_pred eEEEEECCCC-CEEEEEecCCcEEEEeCCCCcee----eeec------------cCCCCCcceEEEEcCCCcEEEEeccC
Confidence 9999999999 99999999999999999987643 2220 223343 8899999999999998
Q ss_pred e-cCcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEE-EeCCCcEEEEecCCCCceeeE
Q 012721 346 D-YMNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-GSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 346 ~-~~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~~~dg~i~iw~~~~~~~~~~~ 422 (457)
+ ++.|++||++....++.... .+...+ ..++|+|++++|++ |+.||.|++|++.+++.....
T Consensus 242 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~ 306 (402)
T 2aq5_A 242 MSERQVALWDTKHLEEPLSLQELDTSSGV---------------LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY 306 (402)
T ss_dssp TCCEEEEEEETTBCSSCSEEEECCCCSSC---------------EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred CCCceEEEEcCccccCCceEEeccCCCce---------------eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence 3 59999999986444344433 233322 68999999999975 557999999999998543555
Q ss_pred Eec--CCCcceeeeeccCCcceec
Q 012721 423 VEA--GKNENRKPILQAAPRARRS 444 (457)
Q Consensus 423 ~~~--~~~~v~~~~~~p~~~~~~~ 444 (457)
+.. |..++.+++|+|++....+
T Consensus 307 l~~~~~~~~v~~~~~sp~~~~~~s 330 (402)
T 2aq5_A 307 LSMFSSKESQRGMGYMPKRGLEVN 330 (402)
T ss_dssp EEEECCSSCCSEEEECCGGGSCGG
T ss_pred ecccccCCcccceEEeccccccee
Confidence 554 4599999999999877665
No 79
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-33 Score=281.84 Aligned_cols=257 Identities=15% Similarity=0.215 Sum_probs=203.9
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++|++|+.||.|+||++.++.. ..+..+.+|.
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-------------------------~~~~~l~~h~------- 53 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-------------------------KLIDTLTGHE------- 53 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-------------------------EEEEEECCCS-------
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-------------------------ccceeccCCc-------
Confidence 35999999999999999999999999999999985432 3567788998
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
++|.+++|.|..++++|++++.||.|++||+.+++......
T Consensus 54 -----~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~---------------------------------- 94 (753)
T 3jro_A 54 -----GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAV---------------------------------- 94 (753)
T ss_dssp -----SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEE----------------------------------
T ss_pred -----CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccc----------------------------------
Confidence 88999999533338999999999999999998875332211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
..+|...|.+++|+|+ +..+++| .|+.|++||++........ .+.+
T Consensus 95 -------------------------~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~------~~~~ 143 (753)
T 3jro_A 95 -------------------------HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI------IIDA 143 (753)
T ss_dssp -------------------------ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE------EEEC
T ss_pred -------------------------ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee------Eeec
Confidence 1578899999999999 9999999 9999999999843222211 2567
Q ss_pred CCCceEEEEEec-------------CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 266 LTEVITSAEFHP-------------IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 266 ~~~~i~~v~~~p-------------~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
|...|.+++|+| ++ .+|++|+.||.|++||++++...... ...+.+|...|++
T Consensus 144 ~~~~v~~l~~~p~~~~~~~~~~~~~d~-~~l~sgs~dg~I~iwd~~~~~~~~~~-------------~~~~~~h~~~V~~ 209 (753)
T 3jro_A 144 HAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWKYNSDAQTYVL-------------ESTLEGHSDWVRD 209 (753)
T ss_dssp CSSCEEEEEECCCC---------CGGG-CCEEEEETTSCEEEEEEETTTTEEEE-------------EEEECCCSSCEEE
T ss_pred CCCceEEEEecCcccccccccccCCCC-CEEEEEECCCeEEEEeccCCccccee-------------eeeecCCCCcEEE
Confidence 899999999999 46 89999999999999999876321111 1224567899999
Q ss_pred EEEccC---CCeEEEEec-CcEEEEeccCCCC----ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 333 IKFAND---GQHLLSRDY-MNLKLWDIRMDST----PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 333 ~~~s~~---g~~l~s~~~-~~i~~wd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
++|+|+ +++|++++. |.|++||++.... .......|...+ ++++|+|++.+|++++.
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v---------------~~l~~spdg~~l~s~s~ 274 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVL---------------WRASWSLSGNVLALSGG 274 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCC---------------CCEEECTTTCCEEEECS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCce---------------EEEEEcCCCCEEEEEcC
Confidence 999999 899999875 9999999976221 122222343332 68999999999999999
Q ss_pred CCcEEEEecCCC
Q 012721 405 SNLLRIFSHGVG 416 (457)
Q Consensus 405 dg~i~iw~~~~~ 416 (457)
||.|++|++.++
T Consensus 275 Dg~I~vwd~~~~ 286 (753)
T 3jro_A 275 DNKVTLWKENLE 286 (753)
T ss_dssp SSCEECCBCCSS
T ss_pred CCEEEEEecCCC
Confidence 999999999865
No 80
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2e-32 Score=253.35 Aligned_cols=256 Identities=16% Similarity=0.208 Sum_probs=200.2
Q ss_pred cccCCceEEEEECCC---CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKT---GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~---~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..|.+.|.+++|+|+ +++|++|+.||.|++|++.+++. .+..+.+|.
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--------------------------~~~~~~~~~---- 111 (357)
T 3i2n_A 62 IEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM--------------------------PVYSVKGHK---- 111 (357)
T ss_dssp EEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS--------------------------CSEEECCCS----
T ss_pred ecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc--------------------------cEEEEEecc----
Confidence 368999999999998 69999999999999999987662 345678888
Q ss_pred ccccccccCcEEEEEEEe----cCCCCEEEEeeCCCeEEEEEecccc-eeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721 106 YLKSLEIEEKINRVRWCA----APNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~----s~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (457)
..|.++.|.+ ++++++|++++.|+.|++||+.++. .........
T Consensus 112 --------~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~----------------------- 160 (357)
T 3i2n_A 112 --------EIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQ----------------------- 160 (357)
T ss_dssp --------SCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCT-----------------------
T ss_pred --------cceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccC-----------------------
Confidence 8899998754 5789999999999999999998865 222211000
Q ss_pred CceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEE----eCCCCCEEEEe-CCCeEEEEEcCCCcceeee
Q 012721 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSIS----NNSDCETFVSA-DDLRINLWNLEISDQCFNI 255 (457)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~ 255 (457)
..+...+.+++ |+|++++|+++ .|+.|++||++ .++...
T Consensus 161 ----------------------------------~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~- 204 (357)
T 3i2n_A 161 ----------------------------------GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR-NMALRW- 204 (357)
T ss_dssp ----------------------------------TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-TTEEEE-
T ss_pred ----------------------------------CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-cCceee-
Confidence 12244788888 78999999999 99999999998 444432
Q ss_pred eecCCCcccCCCCceEEEEEec---CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 256 VDMKPSNMDDLTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 256 ~~~~~~~~~~~~~~i~~v~~~p---~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
...|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+.. ..+.+|...|++
T Consensus 205 -------~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~----~~~~~--------~~~~~~~~~v~~ 264 (357)
T 3i2n_A 205 -------ETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPT----KGFAS--------VSEKAHKSTVWQ 264 (357)
T ss_dssp -------EEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETT----TEEEE--------EEEECCSSCEEE
T ss_pred -------ecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcc----cceee--------eccCCCcCCEEE
Confidence 345778999999999 88 99999999999999999886432 11111 013467889999
Q ss_pred EEEccCCC-eEEEEec-CcEEEEeccCCC------------------CceeEeeeccccccccccccCCCCccccceEEE
Q 012721 333 IKFANDGQ-HLLSRDY-MNLKLWDIRMDS------------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 333 ~~~s~~g~-~l~s~~~-~~i~~wd~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
++|+|+++ +|++++. |.|++||++... +.+..+..|...+ ++++|
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v---------------~~~~~ 329 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI---------------SSLDW 329 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE---------------EEEEE
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe---------------eEEEE
Confidence 99999998 7888765 999999997522 2355566666654 79999
Q ss_pred cCCCcEEE-EEeCCCcEEEEecCCC
Q 012721 393 SGDGLHFA-TGSYSNLLRIFSHGVG 416 (457)
Q Consensus 393 s~d~~~l~-s~~~dg~i~iw~~~~~ 416 (457)
+|++++|+ +++.||.|++||+.+.
T Consensus 330 s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 330 SPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cCCCCeEEEEecCCCcEEEEECCCc
Confidence 99999998 8999999999999876
No 81
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.6e-33 Score=253.06 Aligned_cols=234 Identities=13% Similarity=0.130 Sum_probs=185.5
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+.|++++| ++++++|++++.|++|++||+.++.......
T Consensus 14 ~~V~~v~~--s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~--------------------------------------- 52 (316)
T 3bg1_A 14 DMIHDAQM--DYYGTRLATCSSDRSVKIFDVRNGGQILIAD--------------------------------------- 52 (316)
T ss_dssp CCEEEEEE--CGGGCEEEEEETTTEEEEEEEETTEEEEEEE---------------------------------------
T ss_pred CeEEEeeE--cCCCCEEEEEeCCCeEEEEEecCCCcEEEEE---------------------------------------
Confidence 88999999 7899999999999999999998764322111
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
+.+|...|.+++|++ ++++|++| .|++|++||++ .+..... ..+.+|...|
T Consensus 53 --------------------l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~-~~~~~~~-----~~~~~h~~~V 106 (316)
T 3bg1_A 53 --------------------LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE-NGTWEKS-----HEHAGHDSSV 106 (316)
T ss_dssp --------------------EECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS-SSCCCEE-----EEECCCSSCC
T ss_pred --------------------EcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC-CCcceEE-----EEccCCCCce
Confidence 168999999999986 48899999 99999999998 3321111 1257899999
Q ss_pred EEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC----------
Q 012721 271 TSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---------- 338 (457)
Q Consensus 271 ~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---------- 338 (457)
.+++|+|+ + .+|++|+.|++|++||++.+... .. ...+.+|...|.+++|+|+
T Consensus 107 ~~v~~~p~~~g-~~lasgs~D~~i~lwd~~~~~~~----~~----------~~~~~~h~~~v~~~~~~~~~~~~~~~~~~ 171 (316)
T 3bg1_A 107 NSVCWAPHDYG-LILACGSSDGAISLLTYTGEGQW----EV----------KKINNAHTIGCNAVSWAPAVVPGSLIDHP 171 (316)
T ss_dssp CEEEECCTTTC-SCEEEECSSSCEEEEEECSSSCE----EE----------CCBTTSSSSCBCCCEECCCCCC------C
T ss_pred EEEEECCCCCC-cEEEEEcCCCCEEEEecCCCCCc----ce----------eeeeccccCCcceEEEccccCCccccccc
Confidence 99999998 6 89999999999999999875211 00 0113456778999999997
Q ss_pred -------CCeEEEEe-cCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCC----cEEEEEeC
Q 012721 339 -------GQHLLSRD-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG----LHFATGSY 404 (457)
Q Consensus 339 -------g~~l~s~~-~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~----~~l~s~~~ 404 (457)
+++|++|+ |+.|++||++... +++..+.+|...+ .+++|+|++ .+|++++.
T Consensus 172 ~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V---------------~~v~~sp~~~~~~~~las~s~ 236 (316)
T 3bg1_A 172 SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWV---------------RDVAWAPSIGLPTSTIASCSQ 236 (316)
T ss_dssp CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCE---------------EEEECCCCSSCSCCEEEEEET
T ss_pred cccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCce---------------EEEEecCCCCCCCceEEEEcC
Confidence 46889887 4999999996422 3566777887765 699999986 89999999
Q ss_pred CCcEEEEecCCC---CceeeEEecCCCcceeeeeccCCcceec
Q 012721 405 SNLLRIFSHGVG---SAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 405 dg~i~iw~~~~~---~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
|++|++|++.+. ......+..|..+|.+++|+|++...++
T Consensus 237 D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las 279 (316)
T 3bg1_A 237 DGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAV 279 (316)
T ss_dssp TCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEE
T ss_pred CCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEE
Confidence 999999999873 1234566789999999999999987776
No 82
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=6.1e-32 Score=268.74 Aligned_cols=299 Identities=11% Similarity=0.132 Sum_probs=210.4
Q ss_pred ccCC---ceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-c---cCC
Q 012721 30 QDVD---IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-Q---SHE 101 (457)
Q Consensus 30 ~h~~---~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~h~ 101 (457)
.|.+ .|.+++|+|+ +++|++++.||.|++||+.+++. +..+ . +|.
T Consensus 201 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------~~~~~~~~~~~~ 253 (615)
T 1pgu_A 201 THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF---------------------------LKYIEDDQEPVQ 253 (615)
T ss_dssp SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE---------------------------EEECCBTTBCCC
T ss_pred ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCE---------------------------eEEecccccccC
Confidence 3777 9999999999 99999999999999999987663 3455 4 677
Q ss_pred ccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecC---CCceeeeeeccccccccccCC
Q 012721 102 PEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDH---FPFVSSENTLLAEKNFMNEHN 178 (457)
Q Consensus 102 ~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 178 (457)
..|.+++| + ++.+|++++.|+.|++||+.+++......... ...+.++.+. ....++....
T Consensus 254 ------------~~v~~~~~--~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~ 317 (615)
T 1pgu_A 254 ------------GGIFALSW--L-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSL 317 (615)
T ss_dssp ------------SCEEEEEE--S-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEET
T ss_pred ------------CceEEEEE--c-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEEC
Confidence 88999999 7 89999999999999999999887766665442 2334444443 2222222111
Q ss_pred CCCceec-----------------------cC-CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE
Q 012721 179 PPSFAHG-----------------------YH-LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV 234 (457)
Q Consensus 179 ~~~~~~~-----------------------~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 234 (457)
.....+. ++ ..-..++.+++|+.. ++. .+|...|.+++| +++..|+
T Consensus 318 ~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~------~~~---~~~~~~v~~~~~-~~~~~l~ 387 (615)
T 1pgu_A 318 DGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSS------SMH---QDHSNLIVSLDN-SKAQEYS 387 (615)
T ss_dssp TSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTT------EEE---CCCCSCEEEEEC-CSTTCCE
T ss_pred CCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEch------hhc---CcccCceEEEEE-CCCcEEE
Confidence 1100000 00 000123355555543 111 345666666666 3355555
Q ss_pred Ee-CCCeEEEEEcCCC--------------------------------------------------------------cc
Q 012721 235 SA-DDLRINLWNLEIS--------------------------------------------------------------DQ 251 (457)
Q Consensus 235 ~~-~d~~i~iwd~~~~--------------------------------------------------------------~~ 251 (457)
++ .|+.|++||+... ..
T Consensus 388 ~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 467 (615)
T 1pgu_A 388 SISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGN 467 (615)
T ss_dssp EEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTS
T ss_pred EEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCC
Confidence 55 6666666665420 01
Q ss_pred eeeeeecCC-----CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-
Q 012721 252 CFNIVDMKP-----SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE- 325 (457)
Q Consensus 252 ~~~~~~~~~-----~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 325 (457)
.+.+++... ..+.+|...|++++|+|++ ++|++++.||.|++||+.+++.. .. +.+
T Consensus 468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~----~~-------------~~~~ 529 (615)
T 1pgu_A 468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSREVK----TS-------------RWAF 529 (615)
T ss_dssp CEEEEETTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEE----EC-------------CSCC
T ss_pred eEEEEECCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCCcce----eE-------------eecC
Confidence 111111111 2356789999999999999 99999999999999999987643 11 223
Q ss_pred cccceEEEEEcc----------CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 326 IIASISDIKFAN----------DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 326 h~~~v~~~~~s~----------~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
|...|++++|+| ++++|++++. +.|++||+....+++..+.+|...+ ++++|+|
T Consensus 530 h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v---------------~~l~~s~ 594 (615)
T 1pgu_A 530 RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGV---------------NNLLWET 594 (615)
T ss_dssp CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCE---------------EEEEEEE
T ss_pred CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccce---------------EEEEEcC
Confidence 678999999999 9999999875 9999999986447888888887765 7999999
Q ss_pred CCcEEEEEeCCCcEEEEecCC
Q 012721 395 DGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+++ |++++.||.|++|++.+
T Consensus 595 ~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp TTE-EEEEETTSCEEEEEEC-
T ss_pred CCC-eEEecCCceEEEEeeec
Confidence 999 99999999999999875
No 83
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.1e-33 Score=266.38 Aligned_cols=299 Identities=9% Similarity=0.074 Sum_probs=200.5
Q ss_pred ccCCceEEEEECCC------CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcc
Q 012721 30 QDVDIVSAIEFDKT------GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPE 103 (457)
Q Consensus 30 ~h~~~V~~~~~s~~------~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 103 (457)
.|.+.|.+++|+|+ +.+||+|+.||+|+|||+..+..... .+ .........+.+|.
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~--~~--------------~~~~~p~~~l~~h~-- 266 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVH--VF--------------KMCEKPSLTLSLAD-- 266 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSS--EE--------------ECCCSCSEEECCTT--
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccc--cc--------------eeecCceEEEEcCC--
Confidence 36789999999997 57999999999999999976642100 00 00011234577887
Q ss_pred ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccccee-EEEeecCCCceeeee-eccccc-cccccCCCC
Q 012721 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVK-KIKEMDHFPFVSSEN-TLLAEK-NFMNEHNPP 180 (457)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~ 180 (457)
..|.+++| +++ ..|++|+.||+|++||+.++... .... .....|.+++ ...+++ .++.+..
T Consensus 267 ----------~~v~sv~~--s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~S-- 330 (524)
T 2j04_B 267 ----------SLITTFDF--LSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTVA-- 330 (524)
T ss_dssp ----------TCEEEEEE--SSS-SEEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEEE--
T ss_pred ----------CCEEEEEe--cCC-CeEEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEec--
Confidence 88999999 454 48999999999999999876432 2222 2344577774 223333 3332221
Q ss_pred CceeccCCccccccceEEEeccCccccccceeeccCCCC--CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeee
Q 012721 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF--NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVD 257 (457)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~ 257 (457)
.++.+++||+... ++...+ .+|.. .|.+++|+|+++.++++ .|++|++||++ .+.+...
T Consensus 331 -----------~D~tvklWD~~~~---~~~~~~-~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~-~~~~~~~-- 392 (524)
T 2j04_B 331 -----------VDGYFYIFNPKDI---ATTKTT-VSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR-AAFAVHP-- 392 (524)
T ss_dssp -----------TTSEEEEECGGGH---HHHCEE-EEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT-CTTCCEE--
T ss_pred -----------cCCeEEEEECCCC---Cccccc-ccccccCcccceEeCCCcCeEEEeCCCCcEEEEECc-cccccee--
Confidence 3668999999743 333333 34543 58899999999999998 99999999998 4544433
Q ss_pred cCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
+.+|...|++++|+|++ ++|++|+.||+|++||+..+ ++..+..... ..+...+++++|+|
T Consensus 393 -----l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~--------~~~~~~~~~~-----~~~~~~v~~v~~sp 453 (524)
T 2j04_B 393 -----LVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARR--------LLHGIKNSSA-----TQKSLRLWKWDYSI 453 (524)
T ss_dssp -----EEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSS--------TTTCC-----------CCCCEEEECBCCS
T ss_pred -----eecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHh--------hccccccCcc-----ceeeeEEEEeccCC
Confidence 56799999999999999 99999999999999998653 1111000000 00123578999999
Q ss_pred CCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc---EEEEEeCCCcEEEEecC
Q 012721 338 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL---HFATGSYSNLLRIFSHG 414 (457)
Q Consensus 338 ~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~---~l~s~~~dg~i~iw~~~ 414 (457)
+++.+.. .+ .+++|+....+..+..+.+|...+ .+++|+|++. +||+|+.||.|+||++.
T Consensus 454 ~g~~~~~-~~-~~~~~~~~~~g~~~~~l~gh~~~V---------------~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 454 KDDKYRI-DS-SYEVYPLTVNDVSKAKIDAHGINI---------------TCTKWNETSAGGKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp SSCEEEE-CC-CCCCCC-------------CCCSC---------------CCEEECCSTTTTTEEEEECTTSEEEEEECS
T ss_pred CCCeEEc-cC-CceecccccCCcceeeecCCCceE---------------EEEECCCCCCccHHHHhhccCceEEEEEcc
Confidence 9986533 22 233443322256777888888765 6899999954 99999999999999987
Q ss_pred CC
Q 012721 415 VG 416 (457)
Q Consensus 415 ~~ 416 (457)
-.
T Consensus 517 ~~ 518 (524)
T 2j04_B 517 LE 518 (524)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 84
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4.8e-31 Score=271.05 Aligned_cols=324 Identities=15% Similarity=0.171 Sum_probs=238.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|.+++|+|++++||+|+.||.|+||++.+++ .+..+.+|.
T Consensus 53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~---------------------------~~~~~~~~~-------- 97 (814)
T 3mkq_A 53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE---------------------------KVVDFEAHP-------- 97 (814)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC---------------------------EEEEEECCS--------
T ss_pred cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc---------------------------EEEEEecCC--------
Confidence 489999999999999999999999999999998776 456778888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+.|.+++| ++++.+|++++.|+.|++|++.++.............+.+++|++.++..+....
T Consensus 98 ----~~v~~~~~--s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------- 160 (814)
T 3mkq_A 98 ----DYIRSIAV--HPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC----------- 160 (814)
T ss_dssp ----SCEEEEEE--CSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE-----------
T ss_pred ----CCEEEEEE--eCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe-----------
Confidence 88999999 7899999999999999999999874333333334556888888874444333221
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
.++.+++|++... .....+...+...+.+++|+| ++.+|+++ .|+.|++||+. .+..... +.+|
T Consensus 161 --~dg~v~vwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~-~~~~~~~-------~~~~ 227 (814)
T 3mkq_A 161 --LDRTVKVWSLGQS---TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ-TKSCVAT-------LEGH 227 (814)
T ss_dssp --TTSEEEEEETTCS---SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT-TTEEEEE-------EECC
T ss_pred --CCCeEEEEECCCC---cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC-CCcEEEE-------EcCC
Confidence 2568999998653 233333345668999999999 99999999 99999999998 5555544 5678
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC--eEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ--HLLS 344 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~--~l~s 344 (457)
...|.+++|+|++ .+|++++.||.|++||+.+++.. ..+ ..|...+.+++|+|++. ++++
T Consensus 228 ~~~v~~~~~~~~~-~~l~~~~~dg~v~vwd~~~~~~~----~~~-------------~~~~~~v~~~~~~~~~~~~~~~~ 289 (814)
T 3mkq_A 228 MSNVSFAVFHPTL-PIIISGSEDGTLKIWNSSTYKVE----KTL-------------NVGLERSWCIATHPTGRKNYIAS 289 (814)
T ss_dssp SSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCSEE----EEE-------------CCSSSSEEEEEECTTCGGGEEEE
T ss_pred CCCEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCcEE----EEe-------------ecCCCcEEEEEEccCCCceEEEE
Confidence 8999999999999 99999999999999999886533 222 33457899999999987 5777
Q ss_pred EecCcEEEEeccCCCCceeEeeeccccccc-----------------ccc------c-----cCCCCccccceEEEcCCC
Q 012721 345 RDYMNLKLWDIRMDSTPVATFKIHEHLRPK-----------------LCD------L-----YNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 345 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~-----------------~~~------~-----~~~~~~~~v~~~~~s~d~ 396 (457)
+.++.+.+|++.. ......+......+.. ... . ........+.+++|+|+|
T Consensus 290 ~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 368 (814)
T 3mkq_A 290 GFDNGFTVLSLGN-DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNG 368 (814)
T ss_dssp EETTEEEEEECSC-CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTS
T ss_pred EeCCCEEEEEcCC-CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCC
Confidence 8888899999864 3322222111000000 000 0 000011124689999999
Q ss_pred cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 397 LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 397 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
++|++++ |+.+.+|++... . ..+.+++.+++|+|++...+.
T Consensus 369 ~~la~~~-~~~~~i~~~~~~-~-----~~~~~~i~~~~~spdg~~la~ 409 (814)
T 3mkq_A 369 RFVTVVG-DGEYVIYTALAW-R-----NKAFGKCQDFVWGPDSNSYAL 409 (814)
T ss_dssp SEEEEEE-TTEEEEEETTTT-E-----EEEEEECSEEEECTTSSCEEE
T ss_pred CEEEEec-CCEEEEEECccc-c-----ccCCCceEEEEEeCCCCeEEE
Confidence 9999988 899999997644 1 122456778888888776655
No 85
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-31 Score=251.01 Aligned_cols=253 Identities=13% Similarity=0.090 Sum_probs=190.1
Q ss_pred ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.|.+.|.+++|+| ++++|++++.|+.|++||+.+... ..+....+|.
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-------------------------~~~~~~~~~~------- 163 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-------------------------QVFAKTDSWD------- 163 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-------------------------EEEECCCCSS-------
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-------------------------EEEeccCCCC-------
Confidence 4899999999999 789999999999999999985332 1112223333
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| ++++.+|++++.|+.|++||+. ++....
T Consensus 164 -----~~v~~~~~--~~~~~~l~~~~~d~~i~i~d~~-~~~~~~------------------------------------ 199 (383)
T 3ei3_B 164 -----YWYCCVDV--SVSRQMLATGDSTGRLLLLGLD-GHEIFK------------------------------------ 199 (383)
T ss_dssp -----CCEEEEEE--ETTTTEEEEEETTSEEEEEETT-SCEEEE------------------------------------
T ss_pred -----CCeEEEEE--CCCCCEEEEECCCCCEEEEECC-CCEEEE------------------------------------
Confidence 77999999 6899999999999999999984 332221
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCC---cceeeeeecCCCcc
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEIS---DQCFNIVDMKPSNM 263 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~ 263 (457)
+ .+|...|.+++|+|+++ +|+++ .|+.|++||++.. ......
T Consensus 200 ------------------------~-~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-------- 246 (383)
T 3ei3_B 200 ------------------------E-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAE-------- 246 (383)
T ss_dssp ------------------------E-ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEE--------
T ss_pred ------------------------e-ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEE--------
Confidence 1 57889999999999998 88998 9999999999842 233332
Q ss_pred cCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeecccccccccccccc----CcccceeccccceEEEEEccC
Q 012721 264 DDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH----GSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 264 ~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~s~~ 338 (457)
.+|...|.+++|+| ++ .+|++++.|+.|++||+++++.. ..+..|.... ............+..++|+|+
T Consensus 247 ~~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~d 321 (383)
T 3ei3_B 247 MPHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPD 321 (383)
T ss_dssp EECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCC
T ss_pred ecCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEeccCCCCceEEEecCC
Confidence 25889999999999 98 99999999999999999987543 2222211000 000000111245666788888
Q ss_pred CCeEEEEe-cCcEEEEeccCCCCceeEeeecc--ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 339 GQHLLSRD-YMNLKLWDIRMDSTPVATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 339 g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+++ +++ |+.|++||+.+ ++.+..+.++. ..+ ..++|+|++++|++|+ |+.|++||+++
T Consensus 322 g~~--s~s~d~~i~iwd~~~-~~~~~~l~~~~~~~~~---------------~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 322 DQL--LLNDKRTIDIYDANS-GGLVHQLRDPNAAGII---------------SLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TTT--CTTCCCCEEEEETTT-CCEEEEECBTTBCSCC---------------CEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ccc--ccCCCCeEEEEecCC-CceeeeecCCCCCceE---------------EEEEEecCccEEEEec-CCcEEEEecCC
Confidence 887 544 59999999986 78888887743 322 4569999999999997 99999999874
No 86
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-31 Score=252.93 Aligned_cols=240 Identities=15% Similarity=0.089 Sum_probs=181.7
Q ss_pred CcEEEEEEEecCCCCEE-EEeeCCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|.+++| ++++++| ++++.|+.|++|++. +++....+..
T Consensus 103 ~~v~~~~~--s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------------------------- 145 (450)
T 2vdu_B 103 SYIRNLRL--TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKR----------------------------------- 145 (450)
T ss_dssp CCEEEEEE--CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEE-----------------------------------
T ss_pred CceEEEEE--cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeec-----------------------------------
Confidence 67999999 7899986 889999999999998 6654433220
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceee-eeecCCCcccCCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFN-IVDMKPSNMDDLTE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~ 268 (457)
..|...|.+++|+|++++|+++ .++.|++|++.. ..... .. ..+.+|..
T Consensus 146 ------------------------~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~-~~~~~~~~----~~~~~h~~ 196 (450)
T 2vdu_B 146 ------------------------FCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINS-IPEEKFTQ----EPILGHVS 196 (450)
T ss_dssp ------------------------EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CCCSSCCC----CCSEECSS
T ss_pred ------------------------ccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCC-cccccccc----eeeecccC
Confidence 2566789999999999999999 999999999983 33221 00 13577999
Q ss_pred ceEEEEEecC---CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 269 VITSAEFHPI---YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 269 ~i~~v~~~p~---~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
.|++++|+|+ + .+|++++.|+.|++||+++++.. .. .+.+|...|.+++|+ ++++|+++
T Consensus 197 ~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~~~----~~------------~~~~h~~~v~~~~~s-d~~~l~s~ 258 (450)
T 2vdu_B 197 MLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCFIV----DK------------WLFGHKHFVSSICCG-KDYLLLSA 258 (450)
T ss_dssp CEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTTCE----EE------------ECCCCSSCEEEEEEC-STTEEEEE
T ss_pred ceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCcee----ee------------eecCCCCceEEEEEC-CCCEEEEE
Confidence 9999999999 8 99999999999999999876432 11 123577899999999 99999998
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccc----------cCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEec
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDL----------YNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSH 413 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~ 413 (457)
+. +.|++||+++ ++.+..+..+.......... .....-..+..++|+|++++|++++ .|+.|++|++
T Consensus 259 ~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 259 GGDDKIFAWDWKT-GKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ESSSEEEEEETTT-CCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eCCCeEEEEECCC-CcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 75 9999999986 77777776443110000000 0001112347899999999999999 8999999999
Q ss_pred --CCCC--ceeeEEecCCCcceeeeeccCC
Q 012721 414 --GVGS--AGGITVEAGKNENRKPILQAAP 439 (457)
Q Consensus 414 --~~~~--~~~~~~~~~~~~v~~~~~~p~~ 439 (457)
.++. .....+.+| .++.+++|+|++
T Consensus 338 ~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~ 366 (450)
T 2vdu_B 338 SEKQKGDLALKQIITFP-YNVISLSAHNDE 366 (450)
T ss_dssp CSSSTTCEEEEEEEECS-SCEEEEEEETTE
T ss_pred ccCCCCceeeccEeccC-CceEEEEecCCc
Confidence 4431 345667777 899999999964
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=7.6e-32 Score=255.93 Aligned_cols=266 Identities=17% Similarity=0.259 Sum_probs=203.4
Q ss_pred ccccCCceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.+.|.+.|++++|+|+ +.+||+|+.+|.|+||++......+ ........+..+.+|.
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~-----------------~~~~~~~~~~~~~~h~----- 181 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP-----------------EPSGECQPDLRLRGHQ----- 181 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC-----------------CTTCCCCCSEEEECCS-----
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc-----------------CccccCCCcEEecCCC-----
Confidence 4569999999999997 6899999999999999997632110 0000123556778888
Q ss_pred cccccccCcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 107 LKSLEIEEKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|.+++| ++++. +|++++.||.|++|++..+.....
T Consensus 182 -------~~v~~l~~--~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------------------------- 219 (430)
T 2xyi_A 182 -------KEGYGLSW--NPNLNGYLLSASDDHTICLWDINATPKEHR--------------------------------- 219 (430)
T ss_dssp -------SCCCCEEE--CTTSTTEEEEECTTSCEEEEETTSCCBGGG---------------------------------
T ss_pred -------CCeEEEEe--CCCCCCeEEEEeCCCeEEEEeCCCCCCCCc---------------------------------
Confidence 88999999 67777 999999999999999987421100
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCc--ceeeeeecCCC
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISD--QCFNIVDMKPS 261 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~--~~~~~~~~~~~ 261 (457)
.......+ .+|...|.+++|+| ++.+|+++ .|+.|++||++... .....
T Consensus 220 --------------------~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~------ 272 (430)
T 2xyi_A 220 --------------------VIDAKNIF-TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHT------ 272 (430)
T ss_dssp --------------------EEECSEEE-CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEE------
T ss_pred --------------------eeccceee-cCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeE------
Confidence 00111112 57899999999999 67888888 99999999998432 23322
Q ss_pred cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-
Q 012721 262 NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ- 340 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~- 340 (457)
+..|...|++++|+|++..+|++|+.||.|++||+++.... ...+..|...|.+++|+|+++
T Consensus 273 -~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~----------------~~~~~~h~~~v~~i~~sp~~~~ 335 (430)
T 2xyi_A 273 -VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK----------------LHSFESHKDEIFQVQWSPHNET 335 (430)
T ss_dssp -EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC----------------SEEEECCSSCEEEEEECSSCTT
T ss_pred -eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC----------------eEEeecCCCCEEEEEECCCCCC
Confidence 46788999999999998458999999999999999874211 112345778999999999996
Q ss_pred eEEEEe-cCcEEEEeccCCC-------------CceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCC
Q 012721 341 HLLSRD-YMNLKLWDIRMDS-------------TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYS 405 (457)
Q Consensus 341 ~l~s~~-~~~i~~wd~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~d 405 (457)
+|++++ ++.|++||+...+ .++..+.+|...+ .+++|+|++. +|++++.|
T Consensus 336 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v---------------~~~~~~p~~~~~l~s~s~d 400 (430)
T 2xyi_A 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKI---------------SDFSWNPNEPWIICSVSED 400 (430)
T ss_dssp EEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCE---------------EEEEECSSSTTEEEEEETT
T ss_pred EEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCc---------------eEEEECCCCCCEEEEEECC
Confidence 467765 5999999997522 4455566666544 6999999999 99999999
Q ss_pred CcEEEEecCCC
Q 012721 406 NLLRIFSHGVG 416 (457)
Q Consensus 406 g~i~iw~~~~~ 416 (457)
|.|+||++...
T Consensus 401 g~i~iw~~~~~ 411 (430)
T 2xyi_A 401 NIMQVWQMAEN 411 (430)
T ss_dssp SEEEEEEECHH
T ss_pred CCEEEeEcccc
Confidence 99999999754
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1e-32 Score=262.39 Aligned_cols=261 Identities=11% Similarity=0.049 Sum_probs=181.5
Q ss_pred cccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
..|.+.|++|+|+| ++++|++|+.||+|+|||+++.... .....|..
T Consensus 161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~---------------------------~~~~~~~~----- 208 (435)
T 4e54_B 161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILR---------------------------VFASSDTI----- 208 (435)
T ss_dssp CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEE---------------------------EEECCSSC-----
T ss_pred cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCcee---------------------------EEeccCCC-----
Confidence 46999999999998 6899999999999999998765421 11122221
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
...+.+++| ++++.+|++|+.||.|++||++......
T Consensus 209 -----~~~~~~~~~--~~~~~~l~~g~~dg~i~~wd~~~~~~~~------------------------------------ 245 (435)
T 4e54_B 209 -----NIWFCSLDV--SASSRMVVTGDNVGNVILLNMDGKELWN------------------------------------ 245 (435)
T ss_dssp -----SCCCCCEEE--ETTTTEEEEECSSSBEEEEESSSCBCCC------------------------------------
T ss_pred -----CccEEEEEE--CCCCCEEEEEeCCCcEeeeccCcceeEE------------------------------------
Confidence 156788999 6899999999999999999986532211
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+.+|...|.+++|+|++. +|++| .|+.|++||++........ ....+
T Consensus 246 --------------------------~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~-----~~~~~ 294 (435)
T 4e54_B 246 --------------------------LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF-----LYSLP 294 (435)
T ss_dssp --------------------------SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC-----SBCCB
T ss_pred --------------------------EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE-----EEeee
Confidence 167999999999999876 67778 9999999999843322211 12467
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccC----cccceeccccceEEEEEccCCCe
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG----SKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
|...|++++|+|++ .+|++++.||.|++||+++++... .+..|..... ...........+..+.+++++.+
T Consensus 295 h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 369 (435)
T 4e54_B 295 HRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWDCPL----GLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNF 369 (435)
T ss_dssp CSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSSSEE----EECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTS
T ss_pred ccccccceeECCCC-CeeEEEcCCCEEEEEECCCCccce----EEecccccccccceeEEEEEcCCCCEEEEEEcCCCCe
Confidence 99999999999999 999999999999999999875431 1111110000 00000011122333444444444
Q ss_pred EEEE-ec-CcEEEEeccCCCCceeEee-eccccccccccccCCCCccccceE-EEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 342 LLSR-DY-MNLKLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 342 l~s~-~~-~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
++++ .+ +.|++||..+ ++.+..+. +|...+ .++ +|+|+|.+|++|+ |+.|+||++++++
T Consensus 370 ~~~~~~~~~~i~iwd~~~-g~~~~~l~~~~~~~v---------------~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 370 KSCTPYELRTIDVFDGNS-GKMMCQLYDPESSGI---------------SSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp CCSSTTCCCCEEEECSSS-CCEEEEECCSSCCCC---------------CCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred EEEEecCCCEEEEEECCC-CcEEEEEeCCCCCcE---------------EEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 4432 23 6799999986 67776654 444443 455 7999999999876 7899999999883
No 89
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-31 Score=254.51 Aligned_cols=276 Identities=15% Similarity=0.192 Sum_probs=200.7
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEec---CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETV---GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
..|.+.|++++|+|++++|++|+.||+|++||++ .++. ...+.+|.
T Consensus 108 ~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~---------------------------~~~~~~~~---- 156 (437)
T 3gre_A 108 YDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESE---------------------------VKFLNCEC---- 156 (437)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTE---------------------------EEEEEEEE----
T ss_pred ccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCce---------------------------eeccccce----
Confidence 3689999999999999999999999999999995 3321 12222221
Q ss_pred cccccc-----ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721 106 YLKSLE-----IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (457)
Q Consensus 106 ~~~~~~-----~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (457)
+..+. +...+.++.+..++++.+|++++.|+.|++||+.+++....+..
T Consensus 157 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~------------------------- 210 (437)
T 3gre_A 157 -IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN------------------------- 210 (437)
T ss_dssp -EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-------------------------
T ss_pred -eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-------------------------
Confidence 11110 33779999977688999999999999999999998766544320
Q ss_pred CceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
..|...|++++|+|++++|++| .|+.|++||++ .++.+..+.
T Consensus 211 ----------------------------------~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~-- 253 (437)
T 3gre_A 211 ----------------------------------SPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR-FNVLIRSWS-- 253 (437)
T ss_dssp ----------------------------------CGGGCCEEEEEECTTSCEEEEEETTSCEEEEETT-TTEEEEEEB--
T ss_pred ----------------------------------CCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcC-CccEEEEEe--
Confidence 1277899999999999999999 99999999999 566655431
Q ss_pred CCcccCCCCceEEEEEec----CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccC-----------ccccee
Q 012721 260 PSNMDDLTEVITSAEFHP----IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHG-----------SKSFFT 324 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p----~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 324 (457)
..|...|.+++|+| ++ .+|++++.||.|++||+++++.. ..+..|..... ....+.
T Consensus 254 ----~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 254 ----FGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGHCQ----YAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp ----CTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTEEE----EEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred ----cCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCcEE----EEEEcCCCCCccceecccccccccceec
Confidence 25777899996665 56 79999999999999999987654 22322111100 011233
Q ss_pred c--cccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccc-------------------------
Q 012721 325 E--IIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC------------------------- 376 (457)
Q Consensus 325 ~--h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~------------------------- 376 (457)
+ |...|++++|+ ++++|++++ |+.|++||+.. ++....+.+|........
T Consensus 325 ~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 325 GIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE-LSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp CCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC-GGGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred ccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC-cccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 4 88899999999 788999887 59999999985 677777766421110000
Q ss_pred cccCCCCccccceEEEcCC--CcEEEEEeCCCcEEEEe
Q 012721 377 DLYNNDSIFDKFECSVSGD--GLHFATGSYSNLLRIFS 412 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d--~~~l~s~~~dg~i~iw~ 412 (457)
.....+ .|++++|+++ +.+|++|+.||.|+||+
T Consensus 403 ~~~h~~---~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHD---IINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CC---CEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccccc---ceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000111 2378999988 88999999999999995
No 90
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=1.5e-30 Score=236.83 Aligned_cols=246 Identities=19% Similarity=0.291 Sum_probs=198.8
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|...|++++|+|++++||+|+.||+|+||++.+++ .+..+.+|.
T Consensus 65 ~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~---------------------------~~~~~~~h~-------- 109 (318)
T 4ggc_A 65 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK---------------------------RLRNMTSHS-------- 109 (318)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE---------------------------EEEEEECCS--------
T ss_pred CCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce---------------------------eEEEecCcc--------
Confidence 478899999999999999999999999999998776 456788888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..+.++.+ ++..+++++.++.+++|+...+.....
T Consensus 110 ----~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~------------------------------------- 144 (318)
T 4ggc_A 110 ----ARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVA------------------------------------- 144 (318)
T ss_dssp ----SCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEE-------------------------------------
T ss_pred ----ceEEEeec----CCCEEEEEecCCceEeeecCCCceeEE-------------------------------------
Confidence 66777665 456999999999999999876533211
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
. +.+|...+.++.+++++++|+++ .|+.|++||++......... .....+..
T Consensus 145 ----------------------~-~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~~~~~ 197 (318)
T 4ggc_A 145 ----------------------T-LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL----QTFTQHQG 197 (318)
T ss_dssp ----------------------E-EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS----EEECCCCS
T ss_pred ----------------------E-EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce----eeecccCC
Confidence 1 15788899999999999999999 99999999998433221110 12456778
Q ss_pred ceEEEEEecCCccEE--EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 269 VITSAEFHPIYCNLL--AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l--~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.|.+++++|+++..+ ++++.++.|++||.+..... .. ..+...+..+.|+|++..+++++
T Consensus 198 ~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~----~~--------------~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 198 AVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL----SA--------------VDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp CEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE----EE--------------EECSSCEEEEEEETTTTEEEEEE
T ss_pred ceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc----cc--------------ccceeeeeeeeecccccceEEEE
Confidence 899999999885554 45678999999999886432 11 22346799999999999888653
Q ss_pred ---cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 347 ---YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 347 ---~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|+.|++||+++ ++++..+.+|...+ ++++|+||+++|+||+.||+|+|||+...
T Consensus 260 g~~d~~i~iwd~~~-~~~~~~l~gH~~~V---------------~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 260 GFAQNQLVIWKYPT-MAKVAELKGHTSRV---------------LSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CTTTCCEEEEETTT-CCEEEEECCCSSCE---------------EEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred EcCCCEEEEEECCC-CcEEEEEcCCCCCE---------------EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 49999999986 88999999998876 79999999999999999999999999765
No 91
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.1e-30 Score=238.15 Aligned_cols=278 Identities=14% Similarity=0.189 Sum_probs=208.5
Q ss_pred ceeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEeccccee---EEEeec-CCCceeeeee
Q 012721 92 RYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVK---KIKEMD-HFPFVSSENT 166 (457)
Q Consensus 92 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~---~~~~~~-~~~~~~~~~~ 166 (457)
.+..+|+||. +.|++|+| +|+ +++|+||+.|++|++||+..++.. ....+. ....|.++.|
T Consensus 29 ~l~~tL~GH~------------~~V~~v~~--sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 29 TLRGTLKGHN------------GWVTQIAT--TPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEECCCS------------SCEEEEEE--CTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred EEEEEECCcc------------CCEEEEEE--eCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence 3566899999 89999999 565 679999999999999999875432 122222 2345777777
Q ss_pred ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (457)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd 245 (457)
.+....++... .++.+++|+....... ... ..+...+..+.+++++.+|+++ .|+.+++||
T Consensus 95 s~dg~~l~s~~--------------~d~~i~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d 156 (340)
T 4aow_A 95 SSDGQFALSGS--------------WDGTLRLWDLTTGTTT---RRF-VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156 (340)
T ss_dssp CTTSSEEEEEE--------------TTSEEEEEETTTTEEE---EEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEc--------------ccccceEEeeccccee---eee-cCCCCceeEEEEeecCccceeecCCCeEEEEE
Confidence 65433222222 2557889988754322 222 4677788899999999999999 999999999
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
+.. ...... ...+|...+..++|++++. .++++++.|+.|++||+++++.. .. +.
T Consensus 157 ~~~-~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~----~~-------------~~ 212 (340)
T 4aow_A 157 TLG-VCKYTV------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK----TN-------------HI 212 (340)
T ss_dssp TTS-CEEEEE------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE----EE-------------EC
T ss_pred eCC-CceEEE------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee----eE-------------ec
Confidence 883 332222 2577899999999988752 47889999999999999987543 22 34
Q ss_pred ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+|...|++++|+|++++|++++. +.|++||++. .+.+..+..+... ..++|+|++.++ +++
T Consensus 213 ~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~-~~~~~~~~~~~~v----------------~~~~~~~~~~~~-~~~ 274 (340)
T 4aow_A 213 GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE-GKHLYTLDGGDII----------------NALCFSPNRYWL-CAA 274 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTT-TEEEEEEECSSCE----------------EEEEECSSSSEE-EEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEecc-CceeeeecCCceE----------------EeeecCCCCcee-ecc
Confidence 57789999999999999999875 9999999986 7777777665432 589999988655 566
Q ss_pred CCCcEEEEecCCCCceeeE---------EecCCCcceeeeeccCCcceec
Q 012721 404 YSNLLRIFSHGVGSAGGIT---------VEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 404 ~dg~i~iw~~~~~~~~~~~---------~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
.|+.|++||++++ ..... ..+|...|.+++|+|++...++
T Consensus 275 ~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 275 TGPSIKIWDLEGK-IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp ETTEEEEEETTTT-EEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CCCEEEEEECCCC-eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 7899999999876 33332 3578999999999999987776
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-32 Score=254.20 Aligned_cols=257 Identities=7% Similarity=-0.004 Sum_probs=193.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...|.+++|+|||+++|+++.|++|+ |...++ .+.+|.
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------------------------------~l~gh~---------- 52 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------------------------------DINCNS---------- 52 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------------------------------CCSSBG----------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc------------------------------eecCCC----------
Confidence 57999999999999999999999999 644332 346788
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..|.+++| +|+| .++.+.+|+.+.....
T Consensus 53 --~~v~~V~F--sPdg-------~~~~~~~~~~~~~~~~----------------------------------------- 80 (588)
T 2j04_A 53 --KNLFHVKE--FPLE-------FENKLDFELAQQNGLL----------------------------------------- 80 (588)
T ss_dssp --GGTEEEEE--ECCC-------CCCTTTTSCCCSSCSS-----------------------------------------
T ss_pred --ccEEEEEE--CCCC-------CcceEEEEeCCCceEe-----------------------------------------
Confidence 78999999 5777 4555555554322111
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC--
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-- 268 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-- 268 (457)
...|...|.+++|+|+|+.||++ .||.|++||.+ . .+.. +. |..
T Consensus 81 ----------------------~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~-~--~l~~-------l~-~~~~~ 127 (588)
T 2j04_A 81 ----------------------NSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN-K--MLTN-------LD-SKGNL 127 (588)
T ss_dssp ----------------------TTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT-E--EEEE-------CC-CSSCS
T ss_pred ----------------------ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC-c--eeee-------cc-CCCcc
Confidence 02457789999999999999999 99999999965 2 4333 34 443
Q ss_pred ---ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc---ccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 269 ---VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH---SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 269 ---~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
.+.+++|+|+| ++|++|+.||+|++||+.+++.... ....+.. ...+|...|.+++|+|+| ++
T Consensus 128 ~~~sv~svafSPDG-~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~---------~~~gh~~~V~sVawSPdg-La 196 (588)
T 2j04_A 128 SSRTYHCFEWNPIE-SSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL---------SDAGSKDWVTHIVWYEDV-LV 196 (588)
T ss_dssp TTTCEEEEEECSSS-SCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC---------SCTTCCCCEEEEEEETTE-EE
T ss_pred ccccEEEEEEcCCC-CEEEEEcCCCEEEEEECCCCccccccceeeeeeec---------ccccccccEEEEEEcCCc-EE
Confidence 59999999999 9999999999999999988642100 0122211 124577899999999999 55
Q ss_pred EEEecCcEEEEeccCCCCc---eeEee-eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 343 LSRDYMNLKLWDIRMDSTP---VATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 343 ~s~~~~~i~~wd~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
+++.|+.|++||+.. +.. ..++. +|...+ .+++|+ ++.||+++ +++|++||+.++ +
T Consensus 197 ass~D~tVrlWd~~~-~~~~~~~~tL~~~h~~~V---------------~svaFs--g~~LASa~-~~tIkLWd~~~~-~ 256 (588)
T 2j04_A 197 AALSNNSVFSMTVSA-SSHQPVSRMIQNASRRKI---------------TDLKIV--DYKVVLTC-PGYVHKIDLKNY-S 256 (588)
T ss_dssp EEETTCCEEEECCCS-SSSCCCEEEEECCCSSCC---------------CCEEEE--TTEEEEEC-SSEEEEEETTTT-E
T ss_pred EEeCCCeEEEEECCC-CccccceeeecccccCcE---------------EEEEEE--CCEEEEEe-CCeEEEEECCCC-e
Confidence 556679999999975 342 24553 565544 689999 68999987 699999999988 3
Q ss_pred eeeEEecCCCcceeeee--ccCCcceeccc
Q 012721 419 GGITVEAGKNENRKPIL--QAAPRARRSSL 446 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~--~p~~~~~~~~~ 446 (457)
......+|.+.+..++| +|++...+++.
T Consensus 257 ~~~~~~gh~~~V~~va~~~s~d~~~La~a~ 286 (588)
T 2j04_A 257 ISSLKTGSLENFHIIPLNHEKESTILLMSN 286 (588)
T ss_dssp EEEEECSCCSCCCEEEETTCSSCEEEEECS
T ss_pred EEEEEcCCCceEEEEEeeeCCCCCEEEEEc
Confidence 33334489999999999 99997777755
No 93
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=246.28 Aligned_cols=260 Identities=16% Similarity=0.137 Sum_probs=188.3
Q ss_pred EEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEE
Q 012721 38 IEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (457)
Q Consensus 38 ~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (457)
..+.+++.+||+|+.||+|++||+.+++.. ..+. . ..|.
T Consensus 42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~---------------------------~~~~--~------------~~v~ 80 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTI---------------------------TTIT--T------------PNPR 80 (343)
T ss_dssp SSSSEEEEEEEEEEETTEEEEEEESSSSCE---------------------------EEEE--E------------ECCC
T ss_pred hhhcCCCCEEEEECCCCcEEEEECCCCcEE---------------------------EEEe--c------------CCce
Confidence 344567899999999999999999887642 2222 2 4577
Q ss_pred EEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceE
Q 012721 118 RVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATK 197 (457)
Q Consensus 118 ~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 197 (457)
++.|+ |+ +++++.|++|++|+.... +.
T Consensus 81 ~~~~~--~~---~~s~s~D~~i~~w~~~~~------------------------------------------------~~ 107 (343)
T 3lrv_A 81 TGGEH--PA---IISRGPCNRLLLLYPGNQ------------------------------------------------IT 107 (343)
T ss_dssp TTCCC--CS---EEEECSTTEEEEEETTTE------------------------------------------------EE
T ss_pred eeeeC--Cc---eEEecCCCeEEEEEccCc------------------------------------------------eE
Confidence 77784 44 999999999999998653 22
Q ss_pred EEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE
Q 012721 198 IANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (457)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 274 (457)
+|+.... +.++....+|...|.+++|+| ++++++++ .|+.|++||++ .++..... ...+...+.+++
T Consensus 108 ~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~-~~~~~~~~------~~~~~~~i~~~~ 177 (343)
T 3lrv_A 108 ILDSKTN---KVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYE-DDSQYIVH------SAKSDVEYSSGV 177 (343)
T ss_dssp EEETTTC---CEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESS-SSCEEEEE------CCCSSCCCCEEE
T ss_pred EeecCCc---ceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECC-CCcEEEEE------ecCCCCceEEEE
Confidence 3333221 222333257788999999999 99999999 99999999999 55554432 234566799999
Q ss_pred EecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEEecCcEEEE
Q 012721 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDYMNLKLW 353 (457)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~~~i~~w 353 (457)
|+|++ .+|++|+.||.|++||+++++... . .+.. |...|++++|+|+|.+|++++++.|++|
T Consensus 178 ~~pdg-~~lasg~~dg~i~iwd~~~~~~~~------~----------~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iw 240 (343)
T 3lrv_A 178 LHKDS-LLLALYSPDGILDVYNLSSPDQAS------S----------RFPVDEEAKIKEVKFADNGYWMVVECDQTVVCF 240 (343)
T ss_dssp ECTTS-CEEEEECTTSCEEEEESSCTTSCC------E----------ECCCCTTSCEEEEEECTTSSEEEEEESSBEEEE
T ss_pred ECCCC-CEEEEEcCCCEEEEEECCCCCCCc------c----------EEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEE
Confidence 99999 999999999999999999874220 0 1233 7789999999999999999988899999
Q ss_pred eccCCCCceeEeee---ccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCceeeEEecCCCc
Q 012721 354 DIRMDSTPVATFKI---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSAGGITVEAGKNE 429 (457)
Q Consensus 354 d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~ 429 (457)
|++. .+.+..+.. |...+.. .+++|+|++++|++++. |+.|++|++..+.+.... .+
T Consensus 241 d~~~-~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~ 301 (343)
T 3lrv_A 241 DLRK-DVGTLAYPTYTIPEFKTGT-------------VTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DE 301 (343)
T ss_dssp ETTS-STTCBSSCCCBC-----CC-------------EEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EE
T ss_pred EcCC-CCcceeecccccccccccc-------------eEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cC
Confidence 9986 555444433 2222100 25999999999999998 999999999766332221 44
Q ss_pred ceeeeecc
Q 012721 430 NRKPILQA 437 (457)
Q Consensus 430 v~~~~~~p 437 (457)
+..+.|+|
T Consensus 302 ~~~~~~~~ 309 (343)
T 3lrv_A 302 ESALCLQS 309 (343)
T ss_dssp EEECCC--
T ss_pred ceeEecCc
Confidence 55555555
No 94
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.8e-30 Score=249.23 Aligned_cols=291 Identities=14% Similarity=0.156 Sum_probs=211.1
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|++++|+|++ +|++|+.||+|++||+.+++ .+..+.+|.
T Consensus 160 ~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~---------------------------~~~~~~~h~-------- 203 (464)
T 3v7d_B 160 GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGC---------------------------CTHVFEGHN-------- 203 (464)
T ss_dssp CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCc---------------------------EEEEECCCC--------
Confidence 499999999999988 99999999999999998765 456788888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc----ccccCCCCCceec
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN----FMNEHNPPSFAHG 185 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 185 (457)
+.|.+++|.+.+++.++++++.|+.|++||+.++............ ..+.+.+.... .+..+......+.
T Consensus 204 ----~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 277 (464)
T 3v7d_B 204 ----STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY--PLVFHTPEENPYFVGVLRGHMASVRTVS 277 (464)
T ss_dssp ----SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS--SEEESCGGGCTTEEEEECCCSSCEEEEE
T ss_pred ----CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc--ceEeeccCCCeEEEEEccCccceEEEEc
Confidence 8899999987788899999999999999999877544322111110 00001110000 0011111111222
Q ss_pred cCCcc----ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 186 YHLEW----TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 186 ~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
+++.+ ..++.+++||+.. .+++..+ .+|...|.+++|+|+++++++| .|+.|++||++ .++....
T Consensus 278 ~~~~~l~~~~~d~~i~vwd~~~---~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~-~~~~~~~----- 347 (464)
T 3v7d_B 278 GHGNIVVSGSYDNTLIVWDVAQ---MKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE-NGELMYT----- 347 (464)
T ss_dssp EETTEEEEEETTSCEEEEETTT---TEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT-TTEEEEE-----
T ss_pred CCCCEEEEEeCCCeEEEEECCC---CcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC-CCcEEEE-----
Confidence 23321 2356899999964 3455555 7899999999999999999999 99999999998 5665554
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
+.+|...|.+++|+ + .+|++++.||.|++||+++.... +.. .|...+..++|+|+++
T Consensus 348 --~~~h~~~v~~~~~~--~-~~l~s~s~dg~v~vwd~~~~~~~------~~~------------~~~~~~~~~~~~~~~~ 404 (464)
T 3v7d_B 348 --LQGHTALVGLLRLS--D-KFLVSAAADGSIRGWDANDYSRK------FSY------------HHTNLSAITTFYVSDN 404 (464)
T ss_dssp --ECCCSSCEEEEEEC--S-SEEEEEETTSEEEEEETTTCCEE------EEE------------ECTTCCCEEEEEECSS
T ss_pred --EeCCCCcEEEEEEc--C-CEEEEEeCCCcEEEEECCCCcee------eee------------cCCCCccEEEEEeCCC
Confidence 57899999999997 3 78999999999999999886422 111 1245678889999999
Q ss_pred eEEEEecCcEEEEeccCCCCceeE-eeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 341 HLLSRDYMNLKLWDIRMDSTPVAT-FKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 341 ~l~s~~~~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
+|++++++.|++||+++ ++.+.. +..|...+ .+++|+ +..++++++.||.+.+|-
T Consensus 405 ~l~~~~dg~i~iwd~~~-g~~~~~~~~~~~~~v---------------~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 405 ILVSGSENQFNIYNLRS-GKLVHANILKDADQI---------------WSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEETTEEEEEETTT-CCEEESCTTTTCSEE---------------EEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEEEecCCeEEEEECCC-CcEEehhhccCCCcE---------------EEEEec-CCEEEEEEEeCCeEEEEE
Confidence 99999999999999986 677664 44454443 688997 445666667777666554
No 95
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=9.9e-31 Score=245.76 Aligned_cols=282 Identities=11% Similarity=0.088 Sum_probs=211.6
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc------eeEEEeecCCCceeeeee
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK------VKKIKEMDHFPFVSSENT 166 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~~~~ 166 (457)
....+.+|. +.|++++| ++ .+|++++.|+.|++|++.+++ ...... .....|.++.|
T Consensus 8 ~~~~~~~h~------------~~i~~~~~--~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~ 70 (397)
T 1sq9_A 8 TANAGKAHD------------ADIFSVSA--CN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDV 70 (397)
T ss_dssp EEEESSCSS------------SCEEEEEE--CS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEE
T ss_pred hhhhhhhhh------------cCeEEEEe--cC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEE
Confidence 445678888 89999999 45 699999999999999999887 333333 34456888888
Q ss_pred ccc----c---ccccccCCCCCceeccCCccccccceEEEeccCcccc-cc-ceeeccCC-----CCCeeEEEeC----C
Q 012721 167 LLA----E---KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA-RC-QKVYPHAH-----DFNINSISNN----S 228 (457)
Q Consensus 167 ~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~-~~~~~~~h-----~~~v~~~~~~----~ 228 (457)
.+. . ..++... .++.+++|+++..... .. +..+ ..| ...|.+++|+ |
T Consensus 71 ~~~~~~~g~~~~~l~s~~--------------~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 135 (397)
T 1sq9_A 71 LQAIERDAFELCLVATTS--------------FSGDLLFYRITREDETKKVIFEKL-DLLDSDMKKHSFWALKWGASNDR 135 (397)
T ss_dssp EEEEETTTEEEEEEEEEE--------------TTSCEEEEEEEECTTTCCEEEEEE-CCSCTTGGGSCEEEEEEECCC--
T ss_pred ecccccCCccccEEEEEc--------------CCCCEEEEEccCCcccccccceee-cccccccCCCcEEEEEEeeccCC
Confidence 866 2 2222221 2568999999754321 11 3333 667 5899999999 9
Q ss_pred CCCE-EEEe-CCCeEEEEEcCCC-----cceee-----eeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 229 DCET-FVSA-DDLRINLWNLEIS-----DQCFN-----IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 229 ~~~~-l~~~-~d~~i~iwd~~~~-----~~~~~-----~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
++++ |+++ .|+.|++||++.. ...+. .+.........|...|.+++|+|++ +|++++.||.|++||
T Consensus 136 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 136 LLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISE 213 (397)
T ss_dssp --CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEE
T ss_pred CCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEE
Confidence 9999 9999 9999999999840 33332 2100000014578899999999997 899999999999999
Q ss_pred ccCCeeeccccccccccccccCcccceecc---ccceEEEEEccCCCeEEEEe-c---CcEEEEeccCCCCceeEeee--
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEI---IASISDIKFANDGQHLLSRD-Y---MNLKLWDIRMDSTPVATFKI-- 367 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~s~~g~~l~s~~-~---~~i~~wd~~~~~~~~~~~~~-- 367 (457)
+++++.. ..+.. ..+| ...|.+++|+|++++|++++ + +.|++||++. ++.+..+..
T Consensus 214 ~~~~~~~----~~~~~----------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~-~~~~~~~~~~~ 278 (397)
T 1sq9_A 214 LSTLRPL----YNFES----------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF-GERIGSLSVPT 278 (397)
T ss_dssp TTTTEEE----EEEEC----------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT-CCEEEEECBC-
T ss_pred CCCCcee----EEEec----------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC-CcccceeccCc
Confidence 9986533 22211 0126 68899999999999999875 6 8999999986 788888877
Q ss_pred -----------ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe------cC----
Q 012721 368 -----------HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE------AG---- 426 (457)
Q Consensus 368 -----------~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~------~~---- 426 (457)
|...+ .+++|+|++++|++++.||.|++||+.++ +....+. +|
T Consensus 279 ~~~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 279 HSSQASLGEFAHSSWV---------------MSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp -------CCBSBSSCE---------------EEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEECCGGGCSSGGGC
T ss_pred ccccccccccccCCcE---------------EEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEecccCcccchhhh
Confidence 66544 68999999999999999999999999998 6778888 88
Q ss_pred -----------CCcceeeeeccCC
Q 012721 427 -----------KNENRKPILQAAP 439 (457)
Q Consensus 427 -----------~~~v~~~~~~p~~ 439 (457)
..+|.+++|+|++
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g 366 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKG 366 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTT
T ss_pred hccccccccccCCceeEEEecccc
Confidence 9999999999998
No 96
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.4e-31 Score=246.72 Aligned_cols=256 Identities=14% Similarity=0.148 Sum_probs=200.7
Q ss_pred ccccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...|.+.|++++|+| ++++||+|+.||+|+||++.++... ....+.+..+.+|.
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~--------------------~~~~~~~~~~~~h~----- 131 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV--------------------LPLREPVITLEGHT----- 131 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS--------------------SCBCSCSEEEECCS-----
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc--------------------cccCCceEEecCCC-----
Confidence 446999999999999 9999999999999999999876431 00112456788888
Q ss_pred cccccccCcEEEEEEEecCCC-CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 107 LKSLEIEEKINRVRWCAAPNG-SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~-~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..|.+++| ++++ .+|++++.|+.|++||+.+++....+.
T Consensus 132 -------~~v~~~~~--~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------------------------------- 171 (402)
T 2aq5_A 132 -------KRVGIVAW--HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG------------------------------- 171 (402)
T ss_dssp -------SCEEEEEE--CSSBTTEEEEEETTSCEEEEETTTTEEEEEEC-------------------------------
T ss_pred -------CeEEEEEE--CcCCCCEEEEEcCCCEEEEEECCCCCccEEEe-------------------------------
Confidence 88999999 6776 699999999999999999876543321
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
..+|...|.+++|+|++++|+++ .|+.|++||++ .++....+ ..
T Consensus 172 ----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~-~~~~~~~~------~~ 216 (402)
T 2aq5_A 172 ----------------------------PDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR-KGTVVAEK------DR 216 (402)
T ss_dssp ----------------------------TTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETT-TTEEEEEE------EC
T ss_pred ----------------------------cCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCC-CCceeeee------cc
Confidence 04688899999999999999999 99999999998 55555442 14
Q ss_pred CCCCc-eEEEEEecCCccEEEEE---ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 265 DLTEV-ITSAEFHPIYCNLLAYS---SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 265 ~~~~~-i~~v~~~p~~~~~l~~~---~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
.|... +.++.|+|++ .+|++| +.|+.|++||+++.+... .... ..|...+.+++|+|+++
T Consensus 217 ~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~~~---~~~~------------~~~~~~v~~~~~s~~~~ 280 (402)
T 2aq5_A 217 PHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEEPL---SLQE------------LDTSSGVLLPFFDPDTN 280 (402)
T ss_dssp SSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSSCS---EEEE------------CCCCSSCEEEEEETTTT
T ss_pred CCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccCCc---eEEe------------ccCCCceeEEEEcCCCC
Confidence 56655 8999999998 999999 799999999998864210 1111 12456799999999999
Q ss_pred eEE-EEe-cCcEEEEeccCCCCc-eeEeeecc--ccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 341 HLL-SRD-YMNLKLWDIRMDSTP-VATFKIHE--HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 341 ~l~-s~~-~~~i~~wd~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+|+ +++ |+.|++||+.. +++ +..+..+. ..+ .+++|+|++.++++ .++.+++|++.+
T Consensus 281 ~l~~~g~~dg~i~i~d~~~-~~~~~~~l~~~~~~~~v---------------~~~~~sp~~~~~~s--~~~~~~~~~l~~ 342 (402)
T 2aq5_A 281 IVYLCGKGDSSIRYFEITS-EAPFLHYLSMFSSKESQ---------------RGMGYMPKRGLEVN--KCEIARFYKLHE 342 (402)
T ss_dssp EEEEEETTCSCEEEEEECS-STTCEEEEEEECCSSCC---------------SEEEECCGGGSCGG--GTEEEEEEEEET
T ss_pred EEEEEEcCCCeEEEEEecC-CCcceEeecccccCCcc---------------cceEEeccccccee--cceeEEEEEcCC
Confidence 997 454 59999999986 443 55665554 332 69999999998865 566999999998
Q ss_pred CC
Q 012721 416 GS 417 (457)
Q Consensus 416 ~~ 417 (457)
+.
T Consensus 343 ~~ 344 (402)
T 2aq5_A 343 RK 344 (402)
T ss_dssp TE
T ss_pred Cc
Confidence 73
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-30 Score=236.78 Aligned_cols=282 Identities=12% Similarity=0.145 Sum_probs=220.1
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
....+.+|. +.|++++| ++++++|++++.|+.|++||+.+++....+.. ....+.+++|.+....
T Consensus 24 ~~~~l~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~ 88 (369)
T 3zwl_B 24 KAIKLTGHE------------RPLTQVKY--NKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKY 88 (369)
T ss_dssp EEEEEECCS------------SCEEEEEE--CTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSE
T ss_pred ccEEEEEee------------ceEEEEEE--cCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCE
Confidence 445678888 89999999 78999999999999999999998877665543 3345778888764333
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC-----CeEEEEEc
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-----LRINLWNL 246 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~ 246 (457)
++... .++.+++||+... +++..+ .+...|.+++|+|++++++++ .+ +.|++||+
T Consensus 89 l~s~~--------------~dg~i~iwd~~~~---~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~ 149 (369)
T 3zwl_B 89 CVTGS--------------ADYSIKLWDVSNG---QCVATW--KSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI 149 (369)
T ss_dssp EEEEE--------------TTTEEEEEETTTC---CEEEEE--ECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred EEEEe--------------CCCeEEEEECCCC---cEEEEe--ecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence 33222 2568999999753 344444 278899999999999999998 88 99999999
Q ss_pred CCCcceeeeeec---CCCcccCCCC--ceEEEEEecCCccEEEEEccCCeEEEEEccCC-eeeccccccccccccccCcc
Q 012721 247 EISDQCFNIVDM---KPSNMDDLTE--VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQS-ALCDHSARILRDAAESHGSK 320 (457)
Q Consensus 247 ~~~~~~~~~~~~---~~~~~~~~~~--~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (457)
............ ....+..|.. .+.+++|+|++ ++|++++.||.|++||+++. +.. ..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~----~~----------- 213 (369)
T 3zwl_B 150 ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYEYV----DS----------- 213 (369)
T ss_dssp EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTEEE----EE-----------
T ss_pred cCCccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcEeE----EE-----------
Confidence 843321111100 0012344555 89999999999 99999999999999999873 221 12
Q ss_pred cceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721 321 SFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (457)
Q Consensus 321 ~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 399 (457)
+..|...|.+++|+|++++|++++. +.|++||++. ++.+..+.. ...+ ..++|+|+++++
T Consensus 214 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~~~~~~~l 274 (369)
T 3zwl_B 214 --IDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST-LQVLKKYET-DCPL---------------NTAVITPLKEFI 274 (369)
T ss_dssp --EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEEC-SSCE---------------EEEEECSSSSEE
T ss_pred --EecCCCceeEEEECCCCCEEEEecCCceEEEEECCC-CceeeeecC-CCCc---------------eeEEecCCCceE
Confidence 3446788999999999999999875 9999999986 777777763 3322 689999999999
Q ss_pred EEEeCCC--------------cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 400 ATGSYSN--------------LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 400 ~s~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
++++.++ .+++||+.++ +....+.+|..+|.+++|+|++...++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~s 332 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEIGRVQGHFGPLNTVAISPQGTSYAS 332 (369)
T ss_dssp EEEECCC-------------CEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCCC-cchhheecccCcEEEEEECCCCCEEEE
Confidence 9999988 8999999999 778889999999999999999987776
No 98
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-30 Score=233.78 Aligned_cols=238 Identities=18% Similarity=0.288 Sum_probs=194.0
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|.+++|+|++++|++|+.||.|++|++..... .+.+..+.+|.
T Consensus 56 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------------------------~~~~~~~~~~~------- 104 (313)
T 3odt_A 56 YTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------------------------EDPLYTLIGHQ------- 104 (313)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------------------------SCC-CEECCCS-------
T ss_pred ecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------------------------CCcccchhhcc-------
Confidence 34889999999999999999999999999999876542 22455677888
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.++.| ++.++++++.|+.|++|| .++....
T Consensus 105 -----~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~------------------------------------ 137 (313)
T 3odt_A 105 -----GNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYN------------------------------------ 137 (313)
T ss_dssp -----SCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEE------------------------------------
T ss_pred -----cCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEe------------------------------------
Confidence 88999999 356999999999999999 3322221
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC-
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD- 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~- 265 (457)
+..|...+.+++|.| +++.++++ .|+.|++||.. ..... +..
T Consensus 138 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~-------~~~~ 182 (313)
T 3odt_A 138 -------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKT-------FSGI 182 (313)
T ss_dssp -------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEE-------ECSS
T ss_pred -------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEE-------Eecc
Confidence 156888999999988 89999999 99999999944 23332 233
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|...+.+++|+|++ . +++++.||.|++||+++++.. .. +.+|...|++++|+|++. |+++
T Consensus 183 ~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~~~----~~-------------~~~~~~~i~~~~~~~~~~-l~~~ 242 (313)
T 3odt_A 183 HNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGDVL----RT-------------YEGHESFVYCIKLLPNGD-IVSC 242 (313)
T ss_dssp CSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCCEE----EE-------------EECCSSCEEEEEECTTSC-EEEE
T ss_pred CcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchhhh----hh-------------hhcCCceEEEEEEecCCC-EEEE
Confidence 88999999999998 6 999999999999999987533 22 345678999999999995 5555
Q ss_pred e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 346 D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 346 ~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+ ++.|++||++. ++++..+..|...+ .+++|+|+++ +++++.||.|++|++.++
T Consensus 243 ~~dg~v~iwd~~~-~~~~~~~~~~~~~i---------------~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 243 GEDRTVRIWSKEN-GSLKQVITLPAISI---------------WSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp ETTSEEEEECTTT-CCEEEEEECSSSCE---------------EEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ecCCEEEEEECCC-CceeEEEeccCceE---------------EEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 4 69999999986 78888888887654 6899999998 567999999999999987
No 99
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.2e-30 Score=258.94 Aligned_cols=285 Identities=14% Similarity=0.165 Sum_probs=210.6
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccce-----eEEEeecCCCceeeeee
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKV-----KKIKEMDHFPFVSSENT 166 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~-----~~~~~~~~~~~~~~~~~ 166 (457)
....+++|. +.|++++| +++ +++|++|+.|++|++|++..+.. ...+ ......|.+++|
T Consensus 374 ~~~~l~~H~------------~~V~~v~~--~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~ 438 (694)
T 3dm0_A 374 LKGTMRAHT------------DMVTAIAT--PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVL 438 (694)
T ss_dssp EEEEEECCS------------SCEEEEEC--CTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEE
T ss_pred hhhhcccCC------------ceeEEEEe--cCCCCCEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEE
Confidence 334567777 89999999 444 57999999999999999876421 1122 223445777777
Q ss_pred ccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEE
Q 012721 167 LLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWN 245 (457)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd 245 (457)
++....++... .++.+++||+... ++.+.+ .+|...|.+++|+|++++|++| .|++|++||
T Consensus 439 s~~g~~l~sgs--------------~Dg~v~vwd~~~~---~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 439 SSDGQFALSGS--------------WDGELRLWDLAAG---VSTRRF-VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN 500 (694)
T ss_dssp CTTSSEEEEEE--------------TTSEEEEEETTTT---EEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CCCCCEEEEEe--------------CCCcEEEEECCCC---cceeEE-eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence 65433333222 2568999999643 444555 7899999999999999999999 999999999
Q ss_pred cCCCcceeeeeecCCCcccCCCCceEEEEEecCCc-cEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 246 LEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC-NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
.. ......+. ....+|...|.+++|+|++. ..|++++.|++|++||+++++.. .. +.
T Consensus 501 ~~-~~~~~~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----~~-------------~~ 558 (694)
T 3dm0_A 501 TL-GECKYTIS----EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR----ST-------------LA 558 (694)
T ss_dssp TT-SCEEEEEC----SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE----EE-------------EC
T ss_pred CC-CCcceeec----cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE----EE-------------Ec
Confidence 87 33332221 12467899999999999862 48999999999999999886432 12 35
Q ss_pred ccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 325 EIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+|...|++++|+|++++|++++. +.|++||++. ++.+..+..+.. + .+++|+|++.+|++++
T Consensus 559 ~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~-~~~~~~~~~~~~-v---------------~~~~~sp~~~~l~~~~ 621 (694)
T 3dm0_A 559 GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE-GKKLYSLEANSV-I---------------HALCFSPNRYWLCAAT 621 (694)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTT-TEEEECCBCSSC-E---------------EEEEECSSSSEEEEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC-CceEEEecCCCc-E---------------EEEEEcCCCcEEEEEc
Confidence 67889999999999999999875 9999999986 666666554332 2 6899999999888776
Q ss_pred CCCcEEEEecCCCCceeeEEecCC-------------------CcceeeeeccCCcceecccccccccc
Q 012721 404 YSNLLRIFSHGVGSAGGITVEAGK-------------------NENRKPILQAAPRARRSSLSNLTRGL 453 (457)
Q Consensus 404 ~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~v~~~~~~p~~~~~~~~~~~~~~~~ 453 (457)
. +.|++||+.++ .....+..+. ..+.+++|+|++....+ ++.+...
T Consensus 622 ~-~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~s--gs~Dg~i 686 (694)
T 3dm0_A 622 E-HGIKIWDLESK-SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFS--GYTDGVI 686 (694)
T ss_dssp T-TEEEEEETTTT-EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEE--EETTSEE
T ss_pred C-CCEEEEECCCC-CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEE--EcCCCeE
Confidence 4 56999999988 4444443321 23678999999998888 4444333
No 100
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.8e-29 Score=240.89 Aligned_cols=276 Identities=14% Similarity=0.259 Sum_probs=216.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|.+++|+ +++|++|+.||+|++||+.+++ .+..+.+|.
T Consensus 157 ~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~---------------------------~~~~~~~h~-------- 199 (445)
T 2ovr_B 157 GHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGE---------------------------CIHTLYGHT-------- 199 (445)
T ss_dssp CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTE---------------------------EEEEECCCS--------
T ss_pred CCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCc---------------------------EEEEECCCC--------
Confidence 489999999998 6799999999999999998765 456788888
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..|.++.|. ++.+++++.|+.|++||+.+++.......+ ...+.++++ ++..+.+.
T Consensus 200 ----~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~---~~~~l~~~------------ 255 (445)
T 2ovr_B 200 ----STVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGH-VAAVRCVQY---DGRRVVSG------------ 255 (445)
T ss_dssp ----SCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECC-SSCEEEEEE---CSSCEEEE------------
T ss_pred ----CcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCC-cccEEEEEE---CCCEEEEE------------
Confidence 889999992 458999999999999999998776655432 344666666 22222211
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..++.+++||.+. .+++..+ .+|...|.+++| ++.+++++ .|+.|++||++ .++.... +.+|..
T Consensus 256 -~~dg~i~iwd~~~---~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~-~~~~~~~-------~~~~~~ 320 (445)
T 2ovr_B 256 -AYDFMVKVWDPET---ETCLHTL-QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVE-TGNCIHT-------LTGHQS 320 (445)
T ss_dssp -ETTSCEEEEEGGG---TEEEEEE-CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETT-TCCEEEE-------ECCCCS
T ss_pred -cCCCEEEEEECCC---CcEeEEe-cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECC-CCCEEEE-------EcCCcc
Confidence 1256899999864 3455555 789999999999 78899999 99999999998 5555544 567888
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
.+.++.++ + .++++|+.||.|++||+++++.. ..+.. ...|...|.+++|+ +++|++++.
T Consensus 321 ~v~~~~~~--~-~~l~~~~~dg~i~vwd~~~~~~~----~~~~~----------~~~~~~~v~~~~~~--~~~l~s~~~d 381 (445)
T 2ovr_B 321 LTSGMELK--D-NILVSGNADSTVKIWDIKTGQCL----QTLQG----------PNKHQSAVTCLQFN--KNFVITSSDD 381 (445)
T ss_dssp CEEEEEEE--T-TEEEEEETTSCEEEEETTTCCEE----EEECS----------TTSCSSCEEEEEEC--SSEEEEEETT
T ss_pred cEEEEEEe--C-CEEEEEeCCCeEEEEECCCCcEE----EEEcc----------CCCCCCCEEEEEEC--CCEEEEEeCC
Confidence 88888874 4 78999999999999999887543 22222 12366889999996 678998875
Q ss_pred CcEEEEeccCCCCceeEee-----eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc----EEEEecCCC
Q 012721 348 MNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL----LRIFSHGVG 416 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~----i~iw~~~~~ 416 (457)
|.|++||+.+ ++.+..+. .+...+ .+++|+|++.+|++|+.||+ |.+||+...
T Consensus 382 g~v~iwd~~~-~~~~~~~~~~~~~~~~~~v---------------~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 382 GTVKLWDLKT-GEFIRNLVTLESGGSGGVV---------------WRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp SEEEEEETTT-CCEEEEEEECTTGGGTCEE---------------EEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred CeEEEEECCC-CceeeeeeccccCCCCceE---------------EEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 9999999986 77777763 333333 78999999999999999998 999999864
No 101
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.98 E-value=5e-30 Score=238.68 Aligned_cols=260 Identities=12% Similarity=0.100 Sum_probs=192.9
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEee-cCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM-DHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
++|.+++| ++++++|++++.|+.|++||+.+++......+ .....+.+++|.+....++... .
T Consensus 9 ~~i~~~~~--s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--------------~ 72 (372)
T 1k8k_C 9 EPISCHAW--NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCG--------------T 72 (372)
T ss_dssp SCCCEEEE--CTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEE--------------T
T ss_pred CCeEEEEE--CCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEc--------------C
Confidence 88999999 78999999999999999999998863333333 2345678888876433332222 2
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce--eeeeecCCCcccCCCCc
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQC--FNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~ 269 (457)
++.+++|+++...... ... ...|...|.+++|+|++++|+++ .|+.|++||++..... ... ...+|...
T Consensus 73 dg~i~vwd~~~~~~~~-~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~------~~~~~~~~ 144 (372)
T 1k8k_C 73 DRNAYVWTLKGRTWKP-TLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKH------IKKPIRST 144 (372)
T ss_dssp TSCEEEEEEETTEEEE-EEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEE------ECTTCCSC
T ss_pred CCeEEEEECCCCeeee-eEE-eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeee------eecccCCC
Confidence 5689999996543211 111 25789999999999999999999 9999999999843321 111 13668899
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc-ccccccccccCcccceeccccceEEEEEccCCCeEEEEec-
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA-RILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY- 347 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~- 347 (457)
|.+++|+|++ .+|++++.||.|++||++......... ..+............+.+|...|.+++|+|++++|++++.
T Consensus 145 i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 223 (372)
T 1k8k_C 145 VLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHD 223 (372)
T ss_dssp EEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred eeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCC
Confidence 9999999999 999999999999999986432110000 0000000011112334577889999999999999999875
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+.|++||++. ++++..+..|...+ .+++|+|++.+|++| .|+.|++|++.+
T Consensus 224 ~~i~i~d~~~-~~~~~~~~~~~~~v---------------~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 224 STVCLADADK-KMAVATLASETLPL---------------LAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp TEEEEEEGGG-TTEEEEEECSSCCE---------------EEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CEEEEEECCC-CceeEEEccCCCCe---------------EEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999999986 78888888887654 689999999988888 899999999987
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=2.9e-30 Score=239.24 Aligned_cols=290 Identities=8% Similarity=-0.027 Sum_probs=193.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC-------CeEEEEEeccccee------EE--EeecC-CCceeeeeeccccccccccC
Q 012721 114 EKINRVRWCAAPNGSMFILSTND-------KTIKLWKVRDQKVK------KI--KEMDH-FPFVSSENTLLAEKNFMNEH 177 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d-------~~i~vw~~~~~~~~------~~--~~~~~-~~~~~~~~~~~~~~~~~~~~ 177 (457)
-+|.+++| +|++.+|++|+.| +.|++|++..+... .. ..+.. ...+.++++. +..+...
T Consensus 15 ~PV~sv~f--s~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~---~~~~~~g 89 (365)
T 4h5i_A 15 YPAYGAKF--LNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS---KGIILVG 89 (365)
T ss_dssp SCEEEEEE--EETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE---TTEEEEE
T ss_pred CCEEEEEE--eCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC---CCEEEEE
Confidence 58999999 5799999998753 35999998754321 11 11111 1123333332 2222111
Q ss_pred CCCCceeccCCccccccceEEEeccCcccc-cccee----eccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCC
Q 012721 178 NPPSFAHGYHLEWTENMATKIANVGNSVHA-RCQKV----YPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEIS 249 (457)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~----~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~ 249 (457)
.......+..+ ..+..+++|+++..... +.... ....+...+.+++|+|||+++++ + .|++|+|||++ .
T Consensus 90 ~~~~~~~l~s~--~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~-~ 166 (365)
T 4h5i_A 90 CNENSTKITQG--KGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPS-D 166 (365)
T ss_dssp CCCCHHHHHHT--SCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETT-T
T ss_pred ECCCccEEEEe--cCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECC-C
Confidence 11111111111 23457999998653221 11111 11345567899999999999764 4 78999999999 5
Q ss_pred cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
.+.... + .|...|.+++|+|+| ++|++++.++ +.+|+..+++... . ....+|...
T Consensus 167 ~~~~~~-------~-~~~~~V~~v~fspdg-~~l~s~s~~~-~~~~~~~~~~~~~----~-----------~~~~~~~~~ 221 (365)
T 4h5i_A 167 LTEKFE-------I-ETRGEVKDLHFSTDG-KVVAYITGSS-LEVISTVTGSCIA----R-----------KTDFDKNWS 221 (365)
T ss_dssp TEEEEE-------E-ECSSCCCEEEECTTS-SEEEEECSSC-EEEEETTTCCEEE----E-----------ECCCCTTEE
T ss_pred CcEEEE-------e-CCCCceEEEEEccCC-ceEEecccee-EEEEEeccCccee----e-----------eecCCCCCC
Confidence 555443 2 366789999999999 9999998655 6666666654321 0 012346678
Q ss_pred eEEEEEccCCCeEEEEe-cC----cEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 330 ISDIKFANDGQHLLSRD-YM----NLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~-~~----~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
|.+++|+|+++++++++ ++ .+++|++...... ...+.+|...+ ++++|+|||++||+
T Consensus 222 v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V---------------~~~~~Spdg~~las 286 (365)
T 4h5i_A 222 LSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGI---------------TSMDVDMKGELAVL 286 (365)
T ss_dssp EEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCE---------------EEEEECTTSCEEEE
T ss_pred EEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCe---------------EeEEECCCCCceEE
Confidence 99999999999999875 33 5788888642211 23445555544 79999999999999
Q ss_pred EeCCCcEEEEecCCCCceeeE-EecCCCcceeeeeccCCcceeccccccccccc
Q 012721 402 GSYSNLLRIFSHGVGSAGGIT-VEAGKNENRKPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 402 ~~~dg~i~iw~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
|+.|++|+|||+.++ +.+.. +.+|..+|++++|+||+...++ ++.+...|
T Consensus 287 gs~D~~V~iwd~~~~-~~~~~~~~gH~~~V~~v~fSpdg~~laS--~S~D~tvr 337 (365)
T 4h5i_A 287 ASNDNSIALVKLKDL-SMSKIFKQAHSFAITEVTISPDSTYVAS--VSAANTIH 337 (365)
T ss_dssp EETTSCEEEEETTTT-EEEEEETTSSSSCEEEEEECTTSCEEEE--EETTSEEE
T ss_pred EcCCCEEEEEECCCC-cEEEEecCcccCCEEEEEECCCCCEEEE--EeCCCeEE
Confidence 999999999999999 55554 5899999999999999998887 55555444
No 103
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.9e-32 Score=252.89 Aligned_cols=235 Identities=11% Similarity=0.088 Sum_probs=180.1
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
++|++++| ++++++|++++.|+.|++|++.++.....
T Consensus 12 ~~v~~~~~--s~~g~~l~~~~~d~~i~iw~~~~~~~~~~----------------------------------------- 48 (377)
T 3dwl_C 12 KPSYEHAF--NSQRTEFVTTTATNQVELYEQDGNGWKHA----------------------------------------- 48 (377)
T ss_dssp SCCSCCEE--CSSSSEEECCCSSSCBCEEEEETTEEEEC-----------------------------------------
T ss_pred CcEEEEEE--CCCCCEEEEecCCCEEEEEEccCCceEEE-----------------------------------------
Confidence 77999999 78999999999999999999987632111
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.. +.+|...|.+++|+|++++|+++ .|+.|++||+......... ..+.+|...|.+
T Consensus 49 -----------------~~-~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~-----~~~~~~~~~v~~ 105 (377)
T 3dwl_C 49 -----------------RT-FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQT-----LVLLRLNRAATF 105 (377)
T ss_dssp -----------------CC-BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCE-----EECCCCSSCEEE
T ss_pred -----------------EE-EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeee-----eEecccCCceEE
Confidence 11 16799999999999999999999 9999999999843301111 125679999999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEEec-CcE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY-MNL 350 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~-~~i 350 (457)
++|+|++ ++|++++.|+.|++||+++++.. ... ..+.+ |...|.+++|+|++++|++++. +.|
T Consensus 106 ~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~----~~~----------~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i 170 (377)
T 3dwl_C 106 VRWSPNE-DKFAVGSGARVISVCYFEQENDW----WVS----------KHLKRPLRSTILSLDWHPNNVLLAAGCADRKA 170 (377)
T ss_dssp EECCTTS-SCCEEEESSSCEEECCC-----C----CCC----------EEECSSCCSCEEEEEECTTSSEEEEEESSSCE
T ss_pred EEECCCC-CEEEEEecCCeEEEEEECCcccc----eee----------eEeecccCCCeEEEEEcCCCCEEEEEeCCCEE
Confidence 9999999 99999999999999999886421 011 11233 7789999999999999999875 999
Q ss_pred EEEeccCC-----------------CCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 351 KLWDIRMD-----------------STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 351 ~~wd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
++||++.. ++++..+ .|...+ .+++|+|++++|++++.||.|++||+
T Consensus 171 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v---------------~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 171 YVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWV---------------HAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSE---------------EEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEEEEEecccCCCccccccccccchhhhhhcc-cCCceE---------------EEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 99998521 2233333 454433 79999999999999999999999999
Q ss_pred CCCCce---eeEEecCCCcceeeeeccCCcceecc
Q 012721 414 GVGSAG---GITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 414 ~~~~~~---~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
.+++.. ...+.+|..++.+++|+|++...++|
T Consensus 235 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 269 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQLPLRSLLWANESAIVAAG 269 (377)
T ss_dssp CSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred CCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence 998431 67889999999999999999877764
No 104
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=4.2e-30 Score=239.65 Aligned_cols=242 Identities=16% Similarity=0.167 Sum_probs=191.2
Q ss_pred eeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 93 YKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 93 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
.+..+.+|. +.|.+++| ++++++|++++.|+.|++|++..+......
T Consensus 3 ~~~~~~~h~------------~~v~~~~~--s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~------------------- 49 (379)
T 3jrp_A 3 MVVIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID------------------- 49 (379)
T ss_dssp --CCEEECC------------CCEEEEEE--CSSSSEEEEEETTSCEEEEEEETTEEEEEE-------------------
T ss_pred ccEEecCCc------------ccEEEEEE--cCCCCEEEEEECCCcEEEEecCCCcceeee-------------------
Confidence 445678888 89999999 789999999999999999999854322211
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCC
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEIS 249 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~ 249 (457)
.+ .+|...|.+++|+++ +++|+++ .|+.|++||++ .
T Consensus 50 ---------------------------------------~~-~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~-~ 88 (379)
T 3jrp_A 50 ---------------------------------------TL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-N 88 (379)
T ss_dssp ---------------------------------------EE-CCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEE-T
T ss_pred ---------------------------------------Ee-cCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcC-C
Confidence 11 679999999999987 8999999 99999999998 4
Q ss_pred cceeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 250 DQCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
+..... ..+..|...|.+++|+|+ + .+|++++.||.|++||++..... .. ..+.+|.
T Consensus 89 ~~~~~~-----~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~~~----~~-----------~~~~~~~ 147 (379)
T 3jrp_A 89 GRWSQI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT----SP-----------IIIDAHA 147 (379)
T ss_dssp TEEEEE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCTTSCC----CE-----------EEEECCT
T ss_pred CceeEe-----eeecCCCcceEEEEeCCCCCC-CEEEEecCCCcEEEEecCCCCce----ee-----------EEecCCC
Confidence 432111 125678999999999999 7 99999999999999999876321 11 1134577
Q ss_pred cceEEEEEcc-------------CCCeEEEEec-CcEEEEeccCCCC---ceeEeeeccccccccccccCCCCccccceE
Q 012721 328 ASISDIKFAN-------------DGQHLLSRDY-MNLKLWDIRMDST---PVATFKIHEHLRPKLCDLYNNDSIFDKFEC 390 (457)
Q Consensus 328 ~~v~~~~~s~-------------~g~~l~s~~~-~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 390 (457)
..|.+++|+| ++.+|++++. +.|++||++.... ....+.+|...+ .++
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v---------------~~~ 212 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDV 212 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEE
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcE---------------eEE
Confidence 8999999999 6899998875 9999999985322 334566676654 699
Q ss_pred EEcCC---CcEEEEEeCCCcEEEEecCCCCc----eeeEEecCCCcceeeeeccCCcceec
Q 012721 391 SVSGD---GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 391 ~~s~d---~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+|+|+ +.+|++++.||.|++||+.++.. .......|..++.+++|+|++....+
T Consensus 213 ~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 273 (379)
T 3jrp_A 213 AWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLAL 273 (379)
T ss_dssp EECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEE
T ss_pred EECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEE
Confidence 99999 89999999999999999998732 22223448899999999999987766
No 105
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.98 E-value=1.8e-30 Score=243.29 Aligned_cols=256 Identities=12% Similarity=0.066 Sum_probs=168.9
Q ss_pred cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (457)
Q Consensus 124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 203 (457)
++++.++++++.|++|++||..++........
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~------------------------------------------------ 129 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNETIITQHVL------------------------------------------------ 129 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTEEEEEEEE------------------------------------------------
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCccceeeee------------------------------------------------
Confidence 35667899999999999999998765432211
Q ss_pred ccccccceeeccCCCCCeeEEEeCC--------CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEE
Q 012721 204 SVHARCQKVYPHAHDFNINSISNNS--------DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAE 274 (457)
Q Consensus 204 ~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 274 (457)
.. +.+|...|++++|+| ++++|++| .|++|+|||++....... +.+|...+.+++
T Consensus 130 -------~~-~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~--------~~~~~~~v~~v~ 193 (393)
T 4gq1_A 130 -------GG-KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILA--------GYPLSSPGISVQ 193 (393)
T ss_dssp -------CT-TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEE--------EEECSSCEEEEE
T ss_pred -------cc-cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeee--------ecCCCCCcEEEE
Confidence 11 278999999999987 78999999 999999999984443333 356888999999
Q ss_pred EecCCccEEEEEccCCeEEEEEccCCeeeccccccc--------cccccccCcccceeccccceEEEEEc-cCCCeEEEE
Q 012721 275 FHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARIL--------RDAAESHGSKSFFTEIIASISDIKFA-NDGQHLLSR 345 (457)
Q Consensus 275 ~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~h~~~v~~~~~s-~~g~~l~s~ 345 (457)
|+|+++.+|++++.||+|++||+++++......... ..............+|...+.++.|+ |+++.|+++
T Consensus 194 ~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~ 273 (393)
T 4gq1_A 194 FRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAM 273 (393)
T ss_dssp EETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEE
T ss_pred ECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEE
Confidence 999985689999999999999999875432111100 00000011112345788899999987 799999998
Q ss_pred ec-CcEEEEeccCCCCceeEeeeccccccccccccC---CCCccccceEEEcC--CCcEEEEEeCCCcEEEEecCCCCce
Q 012721 346 DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN---NDSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAG 419 (457)
Q Consensus 346 ~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~~~~~ 419 (457)
+. +.+++||+.. ++....+..|...+........ .........+.|+| ++.++++|+.||+|++||+.++ ..
T Consensus 274 s~d~~i~vwd~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~-~~ 351 (393)
T 4gq1_A 274 CKSGAWLRWNLFA-NNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK-DS 351 (393)
T ss_dssp CTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT-TC
T ss_pred eCCCCEEEEECcc-CCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC-cE
Confidence 75 9999999975 5555555444433221100000 00000012345554 4567888999999999999998 56
Q ss_pred eeEEecCCCcceeeeeccCCcceecc
Q 012721 420 GITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 420 ~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
...+.+|..+|++++|+|+++..+++
T Consensus 352 ~~~~~~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 352 NSIPIQLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp CEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred EEEecCCCCcEEEEEEcCCCCEEEEE
Confidence 67778899999999999999988774
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.98 E-value=7.8e-30 Score=235.57 Aligned_cols=300 Identities=12% Similarity=0.095 Sum_probs=195.7
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|||++||+|+.++ ++||++++.+.. ...+.
T Consensus 16 ~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~-----------------------------~~~~~------- 58 (355)
T 3vu4_A 16 NHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHI-----------------------------MSQEM------- 58 (355)
T ss_dssp ---CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEE-----------------------------EEEEC-------
T ss_pred ccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCccee-----------------------------eeeec-------
Confidence 34899999999999999999998775 789998765431 11111
Q ss_pred cccccCcEEEEEEEecCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..+..+++ .++++.+ ++++.|++|++||..+++....+. ....+.++.+.+.. ..
T Consensus 59 -----~~~~~~~~--~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~-~~-------------- 114 (355)
T 3vu4_A 59 -----RHLSKVRM--LHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSREF-IV-------------- 114 (355)
T ss_dssp -----SCCCEEEE--CTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSSE-EE--------------
T ss_pred -----CCeEEEEE--cCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCCE-EE--------------
Confidence 23667777 4555566 567888999999999988776554 34467777665321 00
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE--e-CCCeEEEEEcCCCcceee------eeec
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS--A-DDLRINLWNLEISDQCFN------IVDM 258 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~--~-~d~~i~iwd~~~~~~~~~------~~~~ 258 (457)
...++.+++|++.... +.+..+ .. +...+++++ .++++ | .||.|++||++....... ....
T Consensus 115 --~~~~~~i~i~d~~~~~--~~~~~~-~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 115 --VSYGDVISVFKFGNPW--KRITDD-IR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp --EEETTEEEEEESSTTC--CBSSCC-EE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred --EEEcCEEEEEECCCCc--eeeEEe-cc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 0124579999997541 222222 11 344455666 45554 6 899999999984320000 0000
Q ss_pred C--CCcccCCCCceEEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccccccccccccccCcccceec-cccceEEEE
Q 012721 259 K--PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHSARILRDAAESHGSKSFFTE-IIASISDIK 334 (457)
Q Consensus 259 ~--~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~ 334 (457)
. ...+.+|...|.+++|+|++ .+|++|+.||+ |++||+++++.. ..+. .+ |...|.+++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~~~----~~~~------------~g~h~~~v~~~~ 247 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGVLV----REFR------------RGLDRADVVDMK 247 (355)
T ss_dssp --CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCCEE----EEEE------------CTTCCSCEEEEE
T ss_pred CcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEE------------cCCCCCcEEEEE
Confidence 0 02368899999999999999 99999999998 999999987543 2222 13 678999999
Q ss_pred EccCCCeEEEEec-CcEEEEeccCCCC-ceeEeee-----ccccccccccc-cCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 335 FANDGQHLLSRDY-MNLKLWDIRMDST-PVATFKI-----HEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 335 ~s~~g~~l~s~~~-~~i~~wd~~~~~~-~~~~~~~-----~~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
|+|+|++|+++++ +.|++||++.... ....+.. +.......+.+ ...........++|++|+++|++++.||
T Consensus 248 ~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg 327 (355)
T 3vu4_A 248 WSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTR 327 (355)
T ss_dssp ECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTT
T ss_pred ECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCC
Confidence 9999999999875 9999999974211 1111111 00000000000 0000111114689999999999999999
Q ss_pred cEEEEecCCC
Q 012721 407 LLRIFSHGVG 416 (457)
Q Consensus 407 ~i~iw~~~~~ 416 (457)
.+++|++..+
T Consensus 328 ~~~~~~~~~~ 337 (355)
T 3vu4_A 328 MIETFKVVFD 337 (355)
T ss_dssp EEEEEEEEEE
T ss_pred eEEEEEEEcC
Confidence 9999998765
No 107
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=1.4e-29 Score=233.01 Aligned_cols=250 Identities=18% Similarity=0.113 Sum_probs=193.6
Q ss_pred eeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721 96 EFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (457)
Q Consensus 96 ~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (457)
.+.+|. +.|++++| ++++.+|++++.|+.|++|++.++.....
T Consensus 6 ~~~gH~------------~~v~~~~~--~~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------------------- 48 (351)
T 3f3f_A 6 FDSGHD------------DLVHDVVY--DFYGRHVATCSSDQHIKVFKLDKDTSNWE----------------------- 48 (351)
T ss_dssp EECCCS------------SCEEEEEE--CSSSSEEEEEETTSEEEEEEECSSSCCEE-----------------------
T ss_pred cCcccc------------cceeEEEE--cCCCCEEEEeeCCCeEEEEECCCCCCcce-----------------------
Confidence 467788 88999999 78999999999999999999987532211
Q ss_pred cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC--CCCEEEEe-CCCeEEEEEcCCCc--
Q 012721 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS--DCETFVSA-DDLRINLWNLEISD-- 250 (457)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~-~d~~i~iwd~~~~~-- 250 (457)
....+ .+|...|.+++|+| ++++|+++ .|+.|++||++...
T Consensus 49 ---------------------------------~~~~~-~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~ 94 (351)
T 3f3f_A 49 ---------------------------------LSDSW-RAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEE 94 (351)
T ss_dssp ---------------------------------EEEEE-ECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCT
T ss_pred ---------------------------------eccee-ccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCccc
Confidence 11111 57999999999999 69999999 99999999998432
Q ss_pred ------ceeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 251 ------QCFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 251 ------~~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
.... .+.+|...|.+++|+|+ + .+|++++.||.|++||+++++.. ..+............
T Consensus 95 ~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 95 CSGRRWNKLC-------TLNDSKGSLYSVKFAPAHLG-LKLACLGNDGILRLYDALEPSDL----RSWTLTSEMKVLSIP 162 (351)
T ss_dssp TSSCSEEEEE-------EECCCSSCEEEEEECCGGGC-SEEEEEETTCEEEEEECSSTTCT----TCCEEEEEEESCSCC
T ss_pred ccccCcceee-------eecccCCceeEEEEcCCCCC-cEEEEecCCCcEEEecCCChHHh----ccccccccccccccc
Confidence 2222 25789999999999999 8 99999999999999999987543 222110111111112
Q ss_pred eeccccceEEEEEccC---CCeEEEEec-CcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721 323 FTEIIASISDIKFAND---GQHLLSRDY-MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~---g~~l~s~~~-~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
...|...+.+++|+|+ +.++++++. +.+.+|+... ++. +..+.+|...+ ++++|+|++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~i---------------~~~~~~p~~ 226 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD-GKLHVAAKLPGHKSLI---------------RSISWAPSI 226 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT-SCEEEEEECCCCCSCE---------------EEEEECCCS
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC-CceeeeeecCCCCcce---------------eEEEECCCC
Confidence 2357788999999997 889998875 7787776653 443 55666776654 699999998
Q ss_pred ----cEEEEEeCCCcEEEEecCCCC---------------------------------------------ceeeEEecCC
Q 012721 397 ----LHFATGSYSNLLRIFSHGVGS---------------------------------------------AGGITVEAGK 427 (457)
Q Consensus 397 ----~~l~s~~~dg~i~iw~~~~~~---------------------------------------------~~~~~~~~~~ 427 (457)
.+|++++.||.|++||+.++. .....+.+|.
T Consensus 227 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 306 (351)
T 3f3f_A 227 GRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHN 306 (351)
T ss_dssp SCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTS
T ss_pred CCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEeccc
Confidence 899999999999999998742 4566778999
Q ss_pred CcceeeeeccCCcceec
Q 012721 428 NENRKPILQAAPRARRS 444 (457)
Q Consensus 428 ~~v~~~~~~p~~~~~~~ 444 (457)
.+|.+++|+|++...++
T Consensus 307 ~~v~~~~~s~~~~~l~s 323 (351)
T 3f3f_A 307 GEVWSVSWNLTGTILSS 323 (351)
T ss_dssp SCEEEEEECSSSCCEEE
T ss_pred ccEEEEEEcCCCCEEEE
Confidence 99999999999987776
No 108
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=4.3e-29 Score=235.24 Aligned_cols=259 Identities=11% Similarity=0.120 Sum_probs=194.6
Q ss_pred ccCCceEEEEECC-CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 30 QDVDIVSAIEFDK-TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 30 ~h~~~V~~~~~s~-~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
.|...|.+++|+| ++.+|++++.||.|++||+.+++. ...+. +.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~---------------------------~~~~~-~~------- 141 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT---------------------------ADVFN-FE------- 141 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEE---------------------------EEEEE-CS-------
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcc---------------------------ceecc-CC-------
Confidence 3899999999999 778999999999999999987653 22222 33
Q ss_pred cccccCcEEEEEEEec-CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 109 SLEIEEKINRVRWCAA-PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s-~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..+.++.|.|. +++.++++++.|+.|++||+.+++....+
T Consensus 142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---------------------------------- 182 (408)
T 4a11_B 142 -----ETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHIL---------------------------------- 182 (408)
T ss_dssp -----SCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEE----------------------------------
T ss_pred -----CceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeee----------------------------------
Confidence 67899999542 24559999999999999999877543321
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecC------
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMK------ 259 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~------ 259 (457)
.+|...|.+++|+|++. +|+++ .|+.|++||++........+...
T Consensus 183 ---------------------------~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 235 (408)
T 4a11_B 183 ---------------------------QGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQ 235 (408)
T ss_dssp ---------------------------CCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred ---------------------------cCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccce
Confidence 57888999999999998 47888 99999999998544344332110
Q ss_pred --CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 260 --PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 260 --~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
.....+|...|.+++|+|++ .+|++++.||.|++||+++++... ....+... .........+...+
T Consensus 236 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~----~~~~~~~~-------~~~~~~~~~~~~~~ 303 (408)
T 4a11_B 236 AVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTL----VNYGKVCN-------NSKKGLKFTVSCGC 303 (408)
T ss_dssp CTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCC----CCCCCCCC-------CCSSCCCCEECCSS
T ss_pred eeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccce----eccccccc-------cccccceeEEecCC
Confidence 01236788999999999999 999999999999999999875431 11110000 00011122233334
Q ss_pred CCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC
Q 012721 338 DGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 338 ~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
...+++++.++.|++||+.. ++++..+.+|...+ ++++|+|++++|++++.||.|++|++.+++
T Consensus 304 ~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~v---------------~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 304 SSEFVFVPYGSTIAVYTVYS-GEQITMLKGHYKTV---------------DCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp SSCEEEEEETTEEEEEETTT-CCEEEEECCCSSCE---------------EEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred CceEEEEecCCEEEEEECcC-CcceeeeccCCCeE---------------EEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 45555566679999999986 88899999888765 689999999999999999999999999883
No 109
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=2.2e-29 Score=238.92 Aligned_cols=254 Identities=15% Similarity=0.186 Sum_probs=191.4
Q ss_pred ccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 108 KSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..+.|.+.|++++|+ ++ +.+|++++.||.|++|++........
T Consensus 123 ~~~~h~~~v~~l~~~--p~~~~~lat~~~dg~V~vwd~~~~~~~~~---------------------------------- 166 (430)
T 2xyi_A 123 IKINHEGEVNRARYM--PQNACVIATKTPSSDVLVFDYTKHPSKPE---------------------------------- 166 (430)
T ss_dssp EEEEESSCCSEEEEE--TTEEEEEEEECSSSCEEEEEGGGSCSSCC----------------------------------
T ss_pred EEEcCCCcEEEEEEC--CCCCcEEEEECCCCcEEEEECCCcccccC----------------------------------
Confidence 334455899999995 55 67899999999999999976311100
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
......++..+ .+|...|.+++|+|++. +|++| .||.|++||+.........+. ....+.
T Consensus 167 ----------------~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~ 228 (430)
T 2xyi_A 167 ----------------PSGECQPDLRL-RGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID-AKNIFT 228 (430)
T ss_dssp ----------------TTCCCCCSEEE-ECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEE-CSEEEC
T ss_pred ----------------ccccCCCcEEe-cCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceec-cceeec
Confidence 00001222223 68999999999999988 99999 999999999984222111110 012356
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLL 343 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~ 343 (457)
+|...|.+++|+|+++.+|++++.||.|++||++++... .. ...+..|...|++++|+|+++ +|+
T Consensus 229 ~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~----~~----------~~~~~~~~~~v~~i~~~p~~~~~l~ 294 (430)
T 2xyi_A 229 GHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTS----KP----------SHTVDAHTAEVNCLSFNPYSEFILA 294 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSS----SC----------SEEEECCSSCEEEEEECSSCTTEEE
T ss_pred CCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCC----cc----------eeEeecCCCCeEEEEeCCCCCCEEE
Confidence 899999999999955489999999999999999976311 01 112345778999999999997 577
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCCC----
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVGS---- 417 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~~---- 417 (457)
+|+. |.|++||++....++..+..|...+ ++++|+|++. +|++++.|+.|+|||+....
T Consensus 295 tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v---------------~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 359 (430)
T 2xyi_A 295 TGSADKTVALWDLRNLKLKLHSFESHKDEI---------------FQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS 359 (430)
T ss_dssp EEETTSEEEEEETTCTTSCSEEEECCSSCE---------------EEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred EEeCCCeEEEEeCCCCCCCeEEeecCCCCE---------------EEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence 7765 9999999986567788888887765 6999999985 79999999999999998732
Q ss_pred ---------ceeeEEecCCCcceeeeeccCCc-ceec
Q 012721 418 ---------AGGITVEAGKNENRKPILQAAPR-ARRS 444 (457)
Q Consensus 418 ---------~~~~~~~~~~~~v~~~~~~p~~~-~~~~ 444 (457)
.......+|...+.+++|+|+++ ...+
T Consensus 360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s 396 (430)
T 2xyi_A 360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICS 396 (430)
T ss_dssp HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence 45677789999999999999998 4443
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.7e-30 Score=242.07 Aligned_cols=265 Identities=8% Similarity=-0.048 Sum_probs=173.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...+....+++++.+||+|+.|++|+|||+.+++.. ....+..+.||.
T Consensus 89 ~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~----------------------~~~~~~~~~gH~---------- 136 (393)
T 4gq1_A 89 DGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETII----------------------TQHVLGGKSGHH---------- 136 (393)
T ss_dssp --------CCEEEEEEEEEETTSCEEEEEEETTEEE----------------------EEEEECTTTSCS----------
T ss_pred CCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccc----------------------eeeeecccCCCC----------
Confidence 334444455556778999999999999999887642 223456688999
Q ss_pred ccCcEEEEEEEec------CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 112 IEEKINRVRWCAA------PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 112 ~~~~V~~v~~~~s------~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
+.|++|+|.|. .++++|++++.|++|+|||+.++......
T Consensus 137 --~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~-------------------------------- 182 (393)
T 4gq1_A 137 --NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAG-------------------------------- 182 (393)
T ss_dssp --SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEE--------------------------------
T ss_pred --CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeee--------------------------------
Confidence 88999999651 26889999999999999999876543221
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeee------
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVD------ 257 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~------ 257 (457)
..|...|.+++|+|++. +|+++ .|++|++||++..........
T Consensus 183 -----------------------------~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~ 233 (393)
T 4gq1_A 183 -----------------------------YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKN 233 (393)
T ss_dssp -----------------------------EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSC
T ss_pred -----------------------------cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCccc
Confidence 46778999999999874 78888 999999999984332211100
Q ss_pred -------cC----CCcccCCCCceEEEEEe-cCCccEEEEEccCCeEEEEEccCCeeecccccccccccccc-----C-c
Q 012721 258 -------MK----PSNMDDLTEVITSAEFH-PIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESH-----G-S 319 (457)
Q Consensus 258 -------~~----~~~~~~~~~~i~~v~~~-p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~-----~-~ 319 (457)
.. .....+|...+.++.|. |++ ..|++++.|+++++||+..++.. ..+..+.... . .
T Consensus 234 ~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~~~----~~l~~~~~~~~~~~~~~~ 308 (393)
T 4gq1_A 234 PWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANNDY----NEISDSTMKLGPKNLLPN 308 (393)
T ss_dssp CCSEEEESGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCS
T ss_pred ceEEecccccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCCCC----ceEeeecCccccEEEccc
Confidence 00 01135678889999997 687 99999999999999999876533 1111100000 0 0
Q ss_pred ccceeccccceEEEEEcc--CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721 320 KSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~--~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
......+...+ ...|+| ++.++++|++ +.|++||+.. ++.......|...+ .+++|+|||
T Consensus 309 ~~~~~~~~~~~-~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~-~~~~~~~~~~~~~V---------------~svafspdG 371 (393)
T 4gq1_A 309 VQGISLFPSLL-GACPHPRYMDYFATAHSQHGLIQLINTYE-KDSNSIPIQLGMPI---------------VDFCWHQDG 371 (393)
T ss_dssp EEEECSSCCSS-CCEECSSCTTEEEEEETTTTEEEEEETTC-TTCCEEEEECSSCE---------------EEEEECTTS
T ss_pred cccccccCcce-eEEEccCCCCEEEEEECCCCEEEEEECCC-CcEEEEecCCCCcE---------------EEEEEcCCC
Confidence 00111112222 334444 3445667764 9999999986 67777777777654 699999999
Q ss_pred cEEEEEeCCCcEEEEecC
Q 012721 397 LHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 397 ~~l~s~~~dg~i~iw~~~ 414 (457)
++||+++++| +.+|.+.
T Consensus 372 ~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 372 SHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp SEEEEEESSE-EEEEEEG
T ss_pred CEEEEEeCCC-eEEEEEe
Confidence 9999999876 5566653
No 111
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.9e-30 Score=239.73 Aligned_cols=262 Identities=7% Similarity=-0.045 Sum_probs=191.3
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...|++++|+|+| .++.+.+|+.+..... .+ .|.
T Consensus 49 ~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~~~----------------------------~~-~~~------- 85 (588)
T 2j04_A 49 NCNSKNLFHVKEFPLE-------FENKLDFELAQQNGLL----------------------------NS-QPV------- 85 (588)
T ss_dssp SSBGGGTEEEEEECCC-------CCCTTTTSCCCSSCSS----------------------------TT-SCS-------
T ss_pred cCCCccEEEEEECCCC-------CcceEEEEeCCCceEe----------------------------ec-CCC-------
Confidence 3699999999999999 4666666654433221 11 334
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++| +|+|++||+++.||.|++|+... .....
T Consensus 86 -----~~V~~vaw--SPdG~~LAs~s~dg~V~iwd~~~--~l~~l----------------------------------- 121 (588)
T 2j04_A 86 -----CYPRVCKP--SPIDDWMAVLSNNGNVSVFKDNK--MLTNL----------------------------------- 121 (588)
T ss_dssp -----CCEEEEEE--CSSSSCEEEEETTSCEEEEETTE--EEEEC-----------------------------------
T ss_pred -----CcEEEEEE--CCCCCEEEEEeCCCcEEEEeCCc--eeeec-----------------------------------
Confidence 78999999 89999999999999999999543 11111
Q ss_pred ccccccceEEEeccCccccccceeeccCCC-----CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce-------eee
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHD-----FNINSISNNSDCETFVSA-DDLRINLWNLEISDQC-------FNI 255 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-------~~~ 255 (457)
. |. ..|.+++|+|||++|++| .||+|++||+.. +.. +..
T Consensus 122 --------------------------~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-~~l~~~~~i~l~t 173 (588)
T 2j04_A 122 --------------------------D-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-NSENTPEFYFESS 173 (588)
T ss_dssp --------------------------C-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC-CTTTCCCCEEEEE
T ss_pred --------------------------c-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC-Cccccccceeeee
Confidence 2 33 259999999999999999 999999999984 432 233
Q ss_pred eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
+.. ...+|...|.+++|+|+| +++++.|++|++||+.+++.. .....+. .+|...|.+++|
T Consensus 174 i~~---~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~-~~~~tL~------------~~h~~~V~svaF 234 (588)
T 2j04_A 174 IRL---SDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQ-PVSRMIQ------------NASRRKITDLKI 234 (588)
T ss_dssp EEC---SCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSC-CCEEEEE------------CCCSSCCCCEEE
T ss_pred eec---ccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccc-cceeeec------------ccccCcEEEEEE
Confidence 211 136788999999999997 888899999999999876421 0001111 245678999999
Q ss_pred ccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE--cCCCcEEEEEeCCCcEEEEec
Q 012721 336 ANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV--SGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 336 s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--s~d~~~l~s~~~dg~i~iw~~ 413 (457)
+ |++||+++++.|++||+.. ++......+|...+ ..++| +||+..|+++++||+ ++|..
T Consensus 235 s--g~~LASa~~~tIkLWd~~~-~~~~~~~~gh~~~V---------------~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 235 V--DYKVVLTCPGYVHKIDLKN-YSISSLKTGSLENF---------------HIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp E--TTEEEEECSSEEEEEETTT-TEEEEEECSCCSCC---------------CEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred E--CCEEEEEeCCeEEEEECCC-CeEEEEEcCCCceE---------------EEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 9 6899988889999999974 44423332677765 68999 999999999999999 88886
Q ss_pred CC-----CC-----------------ceeeEEecCCCcceeeeeccCCcceec
Q 012721 414 GV-----GS-----------------AGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 414 ~~-----~~-----------------~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+. +. .....+++ ...|.+++|+|+|...+.
T Consensus 296 d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~-~~~I~~va~SPdG~~lA~ 347 (588)
T 2j04_A 296 DELHVTADNIIAPYLEKKFKKWSTIWNEFNNYET-TLVIHGISLSPDGYSIAI 347 (588)
T ss_dssp SSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCC-EEEEEEEEECTTSSEEEE
T ss_pred ccEEECCCceEEEEcCCEEEEEECCCCceeeecc-ceEEEEEEECCCCCEEEE
Confidence 31 10 11222333 456899999999977665
No 112
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=8.6e-29 Score=232.82 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=208.0
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.+.++.| ++ ..+++++.|+.|++|++.+++............+.+++|++....++... .++
T Consensus 95 ~~~~~~~--s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------------~dg 156 (401)
T 4aez_A 95 YLNLLDW--SN--LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL--------------GNG 156 (401)
T ss_dssp TCBCEEE--CT--TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE--------------TTS
T ss_pred eEEEEee--cC--CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC--------------CCC
Confidence 3566777 43 45888899999999999999888877776677789999887433333322 256
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
.+++|+++.. +.+..+ .+|...|.+++| ++.+|+++ .|+.|++||++........ +.+|...|.++
T Consensus 157 ~i~iwd~~~~---~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~-------~~~~~~~v~~~ 223 (401)
T 4aez_A 157 LVDIYDVESQ---TKLRTM-AGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGT-------LQGHSSEVCGL 223 (401)
T ss_dssp CEEEEETTTC---CEEEEE-CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEE-------EECCSSCEEEE
T ss_pred eEEEEECcCC---eEEEEe-cCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeE-------EcCCCCCeeEE
Confidence 8999998753 445555 689999999999 46799998 9999999999854544443 57899999999
Q ss_pred EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC-eEEEEe---cCc
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ-HLLSRD---YMN 349 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~-~l~s~~---~~~ 349 (457)
+|+|++ .+|++++.||.|++||+++++.. .. +..|...|.+++|+|++. ++++++ ++.
T Consensus 224 ~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~----~~-------------~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~ 285 (401)
T 4aez_A 224 AWRSDG-LQLASGGNDNVVQIWDARSSIPK----FT-------------KTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ 285 (401)
T ss_dssp EECTTS-SEEEEEETTSCEEEEETTCSSEE----EE-------------ECCCSSCCCEEEECTTSTTEEEEECCTTTCE
T ss_pred EEcCCC-CEEEEEeCCCeEEEccCCCCCcc----EE-------------ecCCcceEEEEEECCCCCCEEEEecCCCCCE
Confidence 999999 99999999999999999986432 11 234678899999999775 555654 599
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE--eCCCcEEEEecCCCCc-eeeEEecC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG--SYSNLLRIFSHGVGSA-GGITVEAG 426 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~--~~dg~i~iw~~~~~~~-~~~~~~~~ 426 (457)
|++||++. ++++..+..+.. + .+++|+|++++|+++ +.||.|++|++.+++. ....+.+|
T Consensus 286 i~i~d~~~-~~~~~~~~~~~~-v---------------~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h 348 (401)
T 4aez_A 286 IHFWNAAT-GARVNTVDAGSQ-V---------------TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH 348 (401)
T ss_dssp EEEEETTT-CCEEEEEECSSC-E---------------EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEECCC-CCEEEEEeCCCc-E---------------EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence 99999986 777777754332 2 689999999999994 4899999999998632 23447799
Q ss_pred CCcceeeeeccCCcceecc
Q 012721 427 KNENRKPILQAAPRARRSS 445 (457)
Q Consensus 427 ~~~v~~~~~~p~~~~~~~~ 445 (457)
..++.+++|+|+++...++
T Consensus 349 ~~~v~~~~~s~dg~~l~s~ 367 (401)
T 4aez_A 349 DTRVLYSALSPDGRILSTA 367 (401)
T ss_dssp SSCCCEEEECTTSSEEEEE
T ss_pred CCCEEEEEECCCCCEEEEE
Confidence 9999999999999877763
No 113
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=5.6e-29 Score=228.84 Aligned_cols=258 Identities=14% Similarity=0.110 Sum_probs=192.4
Q ss_pred ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEe-cCCccCCCcccchhhhhhcccccccCCCccceeeeecc--CCcc
Q 012721 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFET-VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQS--HEPE 103 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~ 103 (457)
...|...|.+++|+|+++ +|++|+.||.|++|++ .+++. ..+.+ |.
T Consensus 52 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~----------------------------~~~~~~~~~-- 101 (342)
T 1yfq_A 52 SLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF----------------------------QALTNNEAN-- 101 (342)
T ss_dssp EEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE----------------------------EECBSCCCC--
T ss_pred eeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce----------------------------EeccccCCC--
Confidence 346899999999999999 9999999999999998 76642 35666 77
Q ss_pred ccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 104 FDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 104 ~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..|.+++|. + +.+|++++.|+.|++||+.+........
T Consensus 102 ----------~~v~~l~~~--~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------------- 139 (342)
T 1yfq_A 102 ----------LGICRICKY--G-DDKLIAASWDGLIEVIDPRNYGDGVIAV----------------------------- 139 (342)
T ss_dssp ----------SCEEEEEEE--T-TTEEEEEETTSEEEEECHHHHTTBCEEE-----------------------------
T ss_pred ----------CceEEEEeC--C-CCEEEEEcCCCeEEEEcccccccccccc-----------------------------
Confidence 889999994 6 8899999999999999987611000000
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC-CcceeeeeecCCC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI-SDQCFNIVDMKPS 261 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~-~~~~~~~~~~~~~ 261 (457)
..+++.. ..|...|.+++|+|++ ++++ .|+.|++||++. ........
T Consensus 140 ----------------------~~~~~~~--~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~----- 188 (342)
T 1yfq_A 140 ----------------------KNLNSNN--TKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIE----- 188 (342)
T ss_dssp ----------------------EESCSSS--SSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEE-----
T ss_pred ----------------------cCCeeeE--EeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceee-----
Confidence 0011111 2377899999999887 7777 999999999984 22222221
Q ss_pred cccCCCCceEEEEEec-CCccEEEEEccCCeEEEEEccCC--eeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721 262 NMDDLTEVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQS--ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
...|...+.+++|+| ++ .+|++++.||.|++||++.. .........+..|.... .-.+|...|.+++|+|+
T Consensus 189 -~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~s~~ 262 (342)
T 1yfq_A 189 -ESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNL----KDTNLAYPVNSIEFSPR 262 (342)
T ss_dssp -ECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCT----TCCSSCCCEEEEEECTT
T ss_pred -ecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccc----cccccceeEEEEEEcCC
Confidence 346778999999999 98 99999999999999999875 10011112333211100 01134558999999999
Q ss_pred CCeEEEEec-CcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCc-EEEEe
Q 012721 339 GQHLLSRDY-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNL-LRIFS 412 (457)
Q Consensus 339 g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~-i~iw~ 412 (457)
+++|++++. |.|++||+.. ++.+..+..| ...+ .+++ |++++|++++.||. .+.|.
T Consensus 263 ~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~h~~~v---------------~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 263 HKFLYTAGSDGIISCWNLQT-RKKIKNFAKFNEDSV---------------VKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TCCEEEEETTSCEEEEETTT-TEEEEECCCCSSSEE---------------EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred CCEEEEecCCceEEEEcCcc-HhHhhhhhcccCCCc---------------eEec--CCCCeEEEEecCCccccccc
Confidence 999999875 9999999986 7888888887 6654 5677 99999999999998 55555
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=6.4e-28 Score=213.16 Aligned_cols=275 Identities=9% Similarity=0.070 Sum_probs=184.3
Q ss_pred ceEEEEECCCCC---EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 34 IVSAIEFDKTGD---YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 34 ~V~~~~~s~~~~---~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
.+.++-|-..|- .++++++. .|++|+..+.. .++.+.+++.|+...--+.-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~-~v~lw~~~~~~------------------------~~~~~~~~~~~~~~v~~~~~~ 95 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACED-VVSLWKALDAW------------------------QWEKLYTWHFAEVPVLQIVPV 95 (356)
T ss_dssp EEEEEEEC----CEEEEEEEESS-EEEEEEESSSS------------------------BEEEEEEEECCSSCEEEECCC
T ss_pred EEeeeeeccCCCCccEEEEeccc-eEEEcccCCCc------------------------cceeeEEEeccCceeEEEEEc
Confidence 356666655443 67788764 89999998863 445666777776221111000
Q ss_pred c-------------ccCcEEEEEEEecCC----CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccc
Q 012721 111 E-------------IEEKINRVRWCAAPN----GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNF 173 (457)
Q Consensus 111 ~-------------~~~~V~~v~~~~s~~----~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (457)
. +...|..+++ +|+ ++.+++++.+ +++|++.+++........
T Consensus 96 ~~~~~~~~~~~~~~~~~~v~sla~--spd~~~~~~~l~s~g~~--~~v~~l~~g~lv~ss~~g----------------- 154 (356)
T 2w18_A 96 PDVYNLVCVALGNLEIREIRALFC--SSDDESEKQVLLKSGNI--KAVLGLTKRRLVSSSGTL----------------- 154 (356)
T ss_dssp TTCCSCEEEEECSSSEEEEEEECC--------CCEEEEEEEEE--EEEEEETTTEEEEEESSS-----------------
T ss_pred CcccceeeeeeccccccceEEEEE--CCCccccccEEEeCCCe--EEEEecCCCcEEEecccC-----------------
Confidence 0 1136778888 678 8888887744 788998776654432111
Q ss_pred cccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC---CCCEEEEe-CCCeEEEEEcCCC
Q 012721 174 MNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS---DCETFVSA-DDLRINLWNLEIS 249 (457)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~~~-~d~~i~iwd~~~~ 249 (457)
.++.|++|++... ++.+..+ ..|...++.++|++ ++.+|+++ .|++|+|||++ .
T Consensus 155 ------------------~d~~V~~~~~s~d--G~~~~s~-~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~-T 212 (356)
T 2w18_A 155 ------------------SDQQVEVMTFAED--GGGKENQ-FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK-T 212 (356)
T ss_dssp ------------------TTCEEEEEEECTT--SCEEEEE-EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT-T
T ss_pred ------------------CCCcEEEEEECCC--Cceeeee-ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC-C
Confidence 1446888888532 3344443 67888999999998 78999998 99999999999 6
Q ss_pred cceeeeeecCCCcccCC---CCceEEEEEecCCccEE------------EEEccCCeEEEEEccCCeeeccccccccccc
Q 012721 250 DQCFNIVDMKPSNMDDL---TEVITSAEFHPIYCNLL------------AYSSSRGFVRLVDMRQSALCDHSARILRDAA 314 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l------------~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 314 (457)
++.+..+ .+| ...+.+++|+|+| .++ ++|+.|++|++||..+++.. .++.. .
T Consensus 213 Gk~l~tL-------~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l----~v~~~-~ 279 (356)
T 2w18_A 213 GQLLKKM-------HIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSV----GVMLY-C 279 (356)
T ss_dssp CCEEEEE-------ECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEEEETTTTEEE----EEEEE-C
T ss_pred CcEEEEE-------cCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEEEECCCCEEE----EEEEe-e
Confidence 7777664 332 3467888999998 765 56788999999999988654 22110 0
Q ss_pred cccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc
Q 012721 315 ESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (457)
Q Consensus 315 ~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 393 (457)
...+|...+.+..++ +.++++++ |++|+|||+.+ ++++.++.+|...+. ..++|+
T Consensus 280 -------~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~t-Gk~l~tL~gH~~~vv--------------s~vafS 335 (356)
T 2w18_A 280 -------LPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLL-GQCTALLPPVSDQHW--------------SFVKWS 335 (356)
T ss_dssp -------CCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTT-CSEEEEECCC--CCC--------------CEEEEC
T ss_pred -------ccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCC-CcEEEEecCCCCCeE--------------EEEEEC
Confidence 002344444444444 88899987 59999999986 899999998876431 358999
Q ss_pred CCCcEEEEEeCCCcEEEEec
Q 012721 394 GDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 394 ~d~~~l~s~~~dg~i~iw~~ 413 (457)
|||++|++|+.|++|+|||+
T Consensus 336 PDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 336 GTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp SSSSEEEEECTTSCEEEEEE
T ss_pred CCCCEEEEEECCCcEEEecC
Confidence 99999999999999999996
No 115
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=1.4e-28 Score=228.27 Aligned_cols=260 Identities=15% Similarity=0.162 Sum_probs=191.4
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|.+.|++++|+|++++|++|+.||.|++||+.+++. ..+.+|.
T Consensus 83 ~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~----------------------------~~~~~~~------- 127 (368)
T 3mmy_A 83 QMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA----------------------------IQIAQHD------- 127 (368)
T ss_dssp EECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE----------------------------EEEEECS-------
T ss_pred ccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCc----------------------------eeecccc-------
Confidence 34899999999999999999999999999999987653 2345677
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..|.+++|++++++.+|++++.|+.|++||+.+++....+.
T Consensus 128 -----~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------------------------------- 168 (368)
T 3mmy_A 128 -----APVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ---------------------------------- 168 (368)
T ss_dssp -----SCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE----------------------------------
T ss_pred -----CceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe----------------------------------
Confidence 88999999888899999999999999999998876544322
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.+ ..+.++.+.+ ..++++ .++.+++|+++......... ...+.
T Consensus 169 ---------------------------~~-~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~ 212 (368)
T 3mmy_A 169 ---------------------------LP-ERCYCADVIY--PMAVVATAERGLIVYQLENQPSEFRRI------ESPLK 212 (368)
T ss_dssp ---------------------------CS-SCEEEEEEET--TEEEEEEGGGCEEEEECSSSCEEEEEC------CCSCS
T ss_pred ---------------------------cC-CCceEEEecC--CeeEEEeCCCcEEEEEeccccchhhhc------ccccc
Confidence 12 2455666653 466677 99999999998544443332 12344
Q ss_pred CceEEEEEecCC---ccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 268 EVITSAEFHPIY---CNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 268 ~~i~~v~~~p~~---~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
..+.++++.++. +..+++++.||.|++||++..... .....+..|. .........+|...|++++|+|++++|++
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~l~s 290 (368)
T 3mmy_A 213 HQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-KDNFTFKCHR-SNGTNTSAPQDIYAVNGIAFHPVHGTLAT 290 (368)
T ss_dssp SCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-HHSEEEECSE-EC----CCCEEECCEEEEEECTTTCCEEE
T ss_pred CCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-ccceeeeeee-cccccccccccccceEEEEEecCCCEEEE
Confidence 555666666554 123999999999999999876321 1112223211 11111222344458999999999999999
Q ss_pred Eec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 345 RDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 345 ~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
++. |.|++||++. ++++..+..|...+ .+++|+|++++|++++.|+..+.|++.+.
T Consensus 291 ~~~dg~i~iwd~~~-~~~~~~~~~~~~~v---------------~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 291 VGSDGRFSFWDKDA-RTKLKTSEQLDQPI---------------SACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp EETTSCEEEEETTT-TEEEEECCCCSSCE---------------EEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred EccCCeEEEEECCC-CcEEEEecCCCCCc---------------eEEEECCCCCeEEEEecccccccccccCC
Confidence 874 9999999985 78888888887765 69999999999999999987666665443
No 116
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.9e-28 Score=231.88 Aligned_cols=259 Identities=9% Similarity=0.035 Sum_probs=191.6
Q ss_pred ccCCceEEEEECCCCCEE-EEEeCCCeEEEEEec--CCccCCCcccchhhhhhcccccccCCCccceeeeec--cCCccc
Q 012721 30 QDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ--SHEPEF 104 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~~ 104 (457)
.|.+.|++++|+|++++| |+|+.||.|+||++. +++. +..+. .|.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~---------------------------~~~~~~~~~~--- 149 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV---------------------------LKLRKRFCFS--- 149 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC---------------------------EEEEEEEECS---
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce---------------------------eeeeecccCC---
Confidence 467789999999999996 899999999999998 5542 23443 444
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..|.+++| ++++.+|++++.|+.|++|++.++.....
T Consensus 150 ---------~~v~~~~~--sp~~~~l~~~~~~g~v~~~~~~~~~~~~~-------------------------------- 186 (450)
T 2vdu_B 150 ---------KRPNAISI--AEDDTTVIIADKFGDVYSIDINSIPEEKF-------------------------------- 186 (450)
T ss_dssp ---------SCEEEEEE--CTTSSEEEEEETTSEEEEEETTSCCCSSC--------------------------------
T ss_pred ---------CCceEEEE--cCCCCEEEEEeCCCcEEEEecCCcccccc--------------------------------
Confidence 78999999 78999999999999999999887643210
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC---CCEEEEe-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD---CETFVSA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
+...+ .+|...|.+++|+|+ +++|++| .|+.|++||++ .+.....+
T Consensus 187 ------------------------~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~-~~~~~~~~---- 236 (450)
T 2vdu_B 187 ------------------------TQEPI-LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYP-QCFIVDKW---- 236 (450)
T ss_dssp ------------------------CCCCS-EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEES-CTTCEEEE----
T ss_pred ------------------------cceee-ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECC-CCceeeee----
Confidence 01111 578899999999999 9999999 99999999998 45444332
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccccccccccc----------ccCc--ccceecccc
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAE----------SHGS--KSFFTEIIA 328 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~----------~~~~--~~~~~~h~~ 328 (457)
+.+|...|.+++|+ ++ .+|++++.|+.|++||+++++.. ..+..+.. .+.. .........
T Consensus 237 --~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (450)
T 2vdu_B 237 --LFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGKNL----STFDYNSLIKPYLNDQHLAPPRFQNENNDIIEF 308 (450)
T ss_dssp --CCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCCEE----EEEECHHHHGGGCCTTSBC----------CBCC
T ss_pred --ecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCcEe----eeecchhhhhhhhhhcccccccccccccccceE
Confidence 46799999999999 88 99999999999999999988654 22221000 0000 000012345
Q ss_pred ceEEEEEccCCCeEEEEe--cCcEEEEec--cCCC---CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 329 SISDIKFANDGQHLLSRD--YMNLKLWDI--RMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~s~~--~~~i~~wd~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
.|.+++|+|++++|++++ ++.|++|++ .. + +.+..+..+ ..+ .+++|+|++.++++
T Consensus 309 ~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-~~~l~~~~~~~~~-~~v---------------~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 309 AVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-KGDLALKQIITFP-YNV---------------ISLSAHNDEFQVTL 371 (450)
T ss_dssp CEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-TTCEEEEEEEECS-SCE---------------EEEEEETTEEEEEE
T ss_pred EEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-CCceeeccEeccC-Cce---------------EEEEecCCcEEEEE
Confidence 799999999999999876 499999999 43 4 455566666 322 68999996554544
Q ss_pred EeC------CCcEEEEecCCC
Q 012721 402 GSY------SNLLRIFSHGVG 416 (457)
Q Consensus 402 ~~~------dg~i~iw~~~~~ 416 (457)
++. +..|.+|.+...
T Consensus 372 ~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 372 DNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp CCTTCCSSCCCSEEEEEEETT
T ss_pred ecccCCCCCCcceEEEEEEcC
Confidence 443 556899987644
No 117
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.1e-28 Score=233.68 Aligned_cols=265 Identities=13% Similarity=0.149 Sum_probs=183.5
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
+.+.|.+++| ++++++|++|+.||.|++|++.+++.......
T Consensus 27 ~~~~V~~v~~--s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~------------------------------------ 68 (447)
T 3dw8_B 27 EADIISTVEF--NHSGELLATGDKGGRVVIFQQEQENKIQSHSR------------------------------------ 68 (447)
T ss_dssp GGGSEEEEEE--CSSSSEEEEEETTSEEEEEEECC-----CCCC------------------------------------
T ss_pred ccCcEEEEEE--CCCCCEEEEEcCCCeEEEEEecCCCCCCcccc------------------------------------
Confidence 3488999999 78999999999999999999987652110000
Q ss_pred cccceEEEeccCccccccceeeccCCC------------CCeeEEEeCCCC--CEEEEe-CCCeEEEEEcCCCcceeeee
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHD------------FNINSISNNSDC--ETFVSA-DDLRINLWNLEISDQCFNIV 256 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--~~l~~~-~d~~i~iwd~~~~~~~~~~~ 256 (457)
...++...+ .+|. ..|.+++|+|++ ..|+++ .|+.|++||+.........+
T Consensus 69 -------------~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~ 134 (447)
T 3dw8_B 69 -------------GEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGY 134 (447)
T ss_dssp -------------CCEEEEEEE-ECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECC
T ss_pred -------------cceeEeccc-ccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCccee
Confidence 000111122 4666 789999999998 788888 99999999997322110000
Q ss_pred ecCC--------------------------------CcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec
Q 012721 257 DMKP--------------------------------SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD 304 (457)
Q Consensus 257 ~~~~--------------------------------~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~ 304 (457)
.... ....+|...|.+++|+|++ ++|++| .|+.|++||++......
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~-~d~~i~iwd~~~~~~~~ 212 (447)
T 3dw8_B 135 NLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDY-ETYLSA-DDLRINLWHLEITDRSF 212 (447)
T ss_dssp SCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTS-SEEEEE-CSSEEEEEETTEEEEEE
T ss_pred cccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCC-CEEEEe-CCCeEEEEECCCCCcee
Confidence 0000 0136799999999999999 999998 79999999998543221
Q ss_pred cccccccccccccCcccceeccccceEEEEEccCC-CeEEEEec-CcEEEEeccCCCCc----eeEeeeccccccccccc
Q 012721 305 HSARILRDAAESHGSKSFFTEIIASISDIKFANDG-QHLLSRDY-MNLKLWDIRMDSTP----VATFKIHEHLRPKLCDL 378 (457)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g-~~l~s~~~-~~i~~wd~~~~~~~----~~~~~~~~~~~~~~~~~ 378 (457)
..+.. ....+.+|...|.+++|+|++ ++|++++. +.|++||++. ++. +..+..|........
T Consensus 213 ---~~~~~------~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~-- 280 (447)
T 3dw8_B 213 ---NIVDI------KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRA-SALCDRHSKLFEEPEDPSNRSF-- 280 (447)
T ss_dssp ---EEEEC------CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTT-CSSSCTTCEEECCC-----CCH--
T ss_pred ---eeeec------ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcC-CccccceeeEeccCCCcccccc--
Confidence 11111 011346788899999999998 89998875 9999999986 554 677777764100000
Q ss_pred cCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce---------------eeeeccCCccee
Q 012721 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR---------------KPILQAAPRARR 443 (457)
Q Consensus 379 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~---------------~~~~~p~~~~~~ 443 (457)
.......+.+++|+|++++|++++. +.|++||+.+.......+.+|...+. .++|+|++...+
T Consensus 281 -~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~ 358 (447)
T 3dw8_B 281 -FSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVM 358 (447)
T ss_dssp -HHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEE
T ss_pred -ccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEE
Confidence 0000001269999999999999999 99999999984477888888865333 389999998776
Q ss_pred c
Q 012721 444 S 444 (457)
Q Consensus 444 ~ 444 (457)
+
T Consensus 359 s 359 (447)
T 3dw8_B 359 T 359 (447)
T ss_dssp E
T ss_pred E
Confidence 6
No 118
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=5.3e-27 Score=219.87 Aligned_cols=288 Identities=10% Similarity=0.085 Sum_probs=213.0
Q ss_pred CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEe
Q 012721 44 GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCA 123 (457)
Q Consensus 44 ~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~ 123 (457)
+.++++++.|+.|++||+.+++ .+..+.+|. .+.+++|
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~---------------------------~~~~~~~~~-------------~~~~~~~-- 39 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNK---------------------------VTATIPVGS-------------NPMGAVI-- 39 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTE---------------------------EEEEEECSS-------------SEEEEEE--
T ss_pred CEEEEEcCCCCEEEEEECCCCe---------------------------EEEEeecCC-------------CcceEEE--
Confidence 3467889999999999998765 334555554 4899999
Q ss_pred cCCCCEE-EEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721 124 APNGSMF-ILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (457)
Q Consensus 124 s~~~~~l-~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 202 (457)
++++.++ ++++.|+.|++||+.+++....+.... .+.+++|.+....++.... .++.+++||..
T Consensus 40 s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~~~-------------~~~~v~v~d~~ 104 (391)
T 1l0q_A 40 SPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNM-------------ASSTLSVIDTT 104 (391)
T ss_dssp CTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEET-------------TTTEEEEEETT
T ss_pred CCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEEEC-------------CCCEEEEEECC
Confidence 7899876 567799999999999988776655433 6777777765443433221 13579999987
Q ss_pred CccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721 203 NSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 280 (457)
.. +.+..+ .+...+.+++|+|+++.+ +++ .|+.|++||+. .++....+ ..+ ..+.+++|+|++
T Consensus 105 ~~---~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------~~~-~~~~~~~~~~dg- 169 (391)
T 1l0q_A 105 SN---TVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTV-TKAVINTV-------SVG-RSPKGIAVTPDG- 169 (391)
T ss_dssp TT---EEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE-------ECC-SSEEEEEECTTS-
T ss_pred CC---eEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCcEEEEE-------ecC-CCcceEEECCCC-
Confidence 54 333333 234578999999999977 567 89999999998 55555442 323 456899999999
Q ss_pred cEE-EEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----cCcEEEEec
Q 012721 281 NLL-AYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----YMNLKLWDI 355 (457)
Q Consensus 281 ~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~~~i~~wd~ 355 (457)
+.| ++++.++.|++||+++++.. ..+. +...+.+++|+|++++|++++ ++.|++||+
T Consensus 170 ~~l~~~~~~~~~v~~~d~~~~~~~----~~~~--------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 170 TKVYVANFDSMSISVIDTVTNSVI----DTVK--------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEE----EEEE--------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred CEEEEEeCCCCEEEEEECCCCeEE----EEEe--------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence 655 77889999999999987543 2222 235688999999999988764 499999999
Q ss_pred cCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE-EEEeCCCcEEEEecCCCCceeeEEecCCCcce---
Q 012721 356 RMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF-ATGSYSNLLRIFSHGVGSAGGITVEAGKNENR--- 431 (457)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~--- 431 (457)
+. ++.+..+..+... .+++|+|++++| ++++.|+.|++||+.++ +....+..+..+..
T Consensus 232 ~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~~~~~~~~~~~~ 293 (391)
T 1l0q_A 232 GT-NKITARIPVGPDP----------------AGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATMAVGKNPYASGQ 293 (391)
T ss_dssp TT-TEEEEEEECCSSE----------------EEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEEECSSSEECCSS
T ss_pred CC-CeEEEEEecCCCc----------------cEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEEECCcCCCccce
Confidence 85 6777777766543 589999999987 57788999999999998 67777887776643
Q ss_pred eeeeccCC
Q 012721 432 KPILQAAP 439 (457)
Q Consensus 432 ~~~~~p~~ 439 (457)
.+.+.|++
T Consensus 294 ~~~~~~~~ 301 (391)
T 1l0q_A 294 FIGSIPVQ 301 (391)
T ss_dssp CEEECSSC
T ss_pred eeeccccc
Confidence 24444443
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-28 Score=248.41 Aligned_cols=241 Identities=16% Similarity=0.173 Sum_probs=190.1
Q ss_pred eeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeecccccccc
Q 012721 95 TEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFM 174 (457)
Q Consensus 95 ~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (457)
..+.+|. ++|++++| ++++++|++|+.||.|++|++.++......
T Consensus 3 ~~l~gH~------------~~V~~l~~--s~dg~~latg~~dg~I~vwd~~~~~~~~~~--------------------- 47 (753)
T 3jro_A 3 VIANAHN------------ELIHDAVL--DYYGKRLATCSSDKTIKIFEVEGETHKLID--------------------- 47 (753)
T ss_dssp -----CC------------CCEEEECC--CSSSCCEEEEETTTEEEEEEEETTEEEEEE---------------------
T ss_pred eecccCc------------ceeEEEEE--CCCCCeEEEEECCCcEEEEecCCCCCccce---------------------
Confidence 3567888 89999999 789999999999999999999854322211
Q ss_pred ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC--CCEEEEe-CCCeEEEEEcCCCcc
Q 012721 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD--CETFVSA-DDLRINLWNLEISDQ 251 (457)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~~~-~d~~i~iwd~~~~~~ 251 (457)
.+ .+|...|.+++|+|+ +++|++| .||.|++||+. .+.
T Consensus 48 -------------------------------------~l-~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~-~~~ 88 (753)
T 3jro_A 48 -------------------------------------TL-TGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE-NGR 88 (753)
T ss_dssp -------------------------------------EE-CCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE-TTE
T ss_pred -------------------------------------ec-cCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC-CCc
Confidence 11 689999999999987 9999999 99999999998 443
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecC--CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPI--YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
.... ..+.+|...|.+++|+|+ + .++++|+.||.|++||++++... .. ..+.+|...
T Consensus 89 ~~~~-----~~~~~h~~~V~~v~~sp~~~~-~~l~sgs~dg~I~vwdl~~~~~~----~~-----------~~~~~~~~~ 147 (753)
T 3jro_A 89 WSQI-----AVHAVHSASVNSVQWAPHEYG-PLLLVASSDGKVSVVEFKENGTT----SP-----------IIIDAHAIG 147 (753)
T ss_dssp EEEE-----EEECCCSSCEEEEEECCGGGC-SEEEEEETTSEEEEEECCSSSCC----CC-----------EEEECCSSC
T ss_pred cccc-----ccccCCCCCeEEEEECCCCCC-CEEEEEeCCCcEEEEEeecCCCc----ce-----------eEeecCCCc
Confidence 2111 125779999999999999 7 99999999999999999886321 11 123567789
Q ss_pred eEEEEEcc-------------CCCeEEEEec-CcEEEEeccCCC---CceeEeeeccccccccccccCCCCccccceEEE
Q 012721 330 ISDIKFAN-------------DGQHLLSRDY-MNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV 392 (457)
Q Consensus 330 v~~~~~s~-------------~g~~l~s~~~-~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 392 (457)
|.+++|+| ++.+|++|+. |.|++||++... .....+.+|...+ ++++|
T Consensus 148 v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V---------------~~l~~ 212 (753)
T 3jro_A 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWV---------------RDVAW 212 (753)
T ss_dssp EEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCE---------------EEEEE
T ss_pred eEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcE---------------EEEEe
Confidence 99999999 5889998875 999999998632 3445666777654 79999
Q ss_pred cCC---CcEEEEEeCCCcEEEEecCCCCc----eeeEEecCCCcceeeeeccCCcceecc
Q 012721 393 SGD---GLHFATGSYSNLLRIFSHGVGSA----GGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 393 s~d---~~~l~s~~~dg~i~iw~~~~~~~----~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
+|+ +.+|++++.||.|++||+.++.. .......|...+.+++|+|++....+|
T Consensus 213 sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~ 272 (753)
T 3jro_A 213 SPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALS 272 (753)
T ss_dssp CCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEE
T ss_pred ccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEE
Confidence 999 99999999999999999998731 334446689999999999999877763
No 120
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=4.1e-27 Score=223.73 Aligned_cols=270 Identities=8% Similarity=0.017 Sum_probs=206.8
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
....+.+++|+|++.++++++.++.|++||+.+++.. .......+.+|.
T Consensus 121 ~~~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~----------------------~~~~~~~~~~~~--------- 169 (433)
T 3bws_A 121 TGFQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTV----------------------RLSPPEKYKKKL--------- 169 (433)
T ss_dssp CSSCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEE----------------------EECCCHHHHTTC---------
T ss_pred CCCCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEe----------------------eecCcccccccC---------
Confidence 4556779999998888888889999999999877642 000011345666
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
+.|.+++| ++++.++++++.|+.|++||+.+++.....
T Consensus 170 ---~~v~~~~~--~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~------------------------------------- 207 (433)
T 3bws_A 170 ---GFVETISI--PEHNELWVSQMQANAVHVFDLKTLAYKATV------------------------------------- 207 (433)
T ss_dssp ---CEEEEEEE--GGGTEEEEEEGGGTEEEEEETTTCCEEEEE-------------------------------------
T ss_pred ---CceeEEEE--cCCCEEEEEECCCCEEEEEECCCceEEEEE-------------------------------------
Confidence 78999999 688999999999999999999887654332
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..|...+.+++|+|+++.++ ++ .|+.|++||++ .++.... +. +..
T Consensus 208 ------------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~-~~~~~~~-------~~-~~~ 254 (433)
T 3bws_A 208 ------------------------DLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRK-TKLEIRK-------TD-KIG 254 (433)
T ss_dssp ------------------------ECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETT-TTEEEEE-------CC-CCS
T ss_pred ------------------------cCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECC-CCcEEEE-------ec-CCC
Confidence 35677899999999999885 56 79999999998 5555543 22 234
Q ss_pred ceEEEEEecCCccEEEEEc--------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 269 VITSAEFHPIYCNLLAYSS--------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~--------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
.+.+++|+|++ +.|++++ .||.|++||+++++.. ... .|...+.+++|+|+++
T Consensus 255 ~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~----~~~--------------~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 255 LPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLI----DTI--------------GPPGNKRHIVSGNTEN 315 (433)
T ss_dssp EEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEE----EEE--------------EEEECEEEEEECSSTT
T ss_pred CceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEE----eec--------------cCCCCcceEEECCCCC
Confidence 58999999999 8888887 4889999999987543 111 2235788999999998
Q ss_pred eEE-EEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC--------------
Q 012721 341 HLL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-------------- 404 (457)
Q Consensus 341 ~l~-s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-------------- 404 (457)
+++ +++ ++.|++||+.. ++.+..+.. ...+ .+++|+|++++|++++.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~-~~~~~~~~~-~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~ 378 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKE-KKVQKSIPV-FDKP---------------NTIALSPDGKYLYVSCRGPNHPTEGYLKKGL 378 (433)
T ss_dssp EEEEEETTTTEEEEEETTT-TEEEEEEEC-SSSE---------------EEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred EEEEEecCCCEEEEEECCC-CcEEEEecC-CCCC---------------CeEEEcCCCCEEEEEecCCCccccccccccc
Confidence 665 444 49999999985 666666653 2222 58999999999988876
Q ss_pred -CCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 405 -SNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 405 -dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
||.|++||+.++ +....+.. ...+..++|+|++.....
T Consensus 379 ~dg~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 379 VLGKVYVIDTTTD-TVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp SCCEEEEEETTTT-EEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred cceEEEEEECCCC-cEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 579999999998 55666665 457899999999987654
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.1e-27 Score=215.91 Aligned_cols=246 Identities=11% Similarity=0.029 Sum_probs=174.9
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeee-ccCCccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEF-QSHEPEFDYLKSL 110 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~ 110 (457)
...|.++.|+|+ +++|+.|++|++|+....... ..+ ...+.+..+ .+|.
T Consensus 76 ~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~-------~~~-----------~~~~~~~~~~~~~~--------- 125 (343)
T 3lrv_A 76 TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITI-------LDS-----------KTNKVLREIEVDSA--------- 125 (343)
T ss_dssp EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEE-------EET-----------TTCCEEEEEECCCS---------
T ss_pred cCCceeeeeCCc---eEEecCCCeEEEEEccCceEE-------eec-----------CCcceeEEeecCCC---------
Confidence 357788888887 999999999999987643210 000 011112222 2444
Q ss_pred cccCcEEEEEEEecC--CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 111 EIEEKINRVRWCAAP--NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~--~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
+.|.+++| +| ++++|++++.|++|++||+.+++......
T Consensus 126 ---~~v~~~~~--~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~---------------------------------- 166 (343)
T 3lrv_A 126 ---NEIIYMYG--HNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHS---------------------------------- 166 (343)
T ss_dssp ---SCEEEEEC--CC---CCEEEEEETTCCEEEEESSSSCEEEEEC----------------------------------
T ss_pred ---CCEEEEEc--CCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEe----------------------------------
Confidence 78999999 67 89999999999999999999886643221
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCccee-eeeecCCCcccC-
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCF-NIVDMKPSNMDD- 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~- 265 (457)
..|...|.+++|+|++.+|++| .|+.|++||++. +... .. +..
T Consensus 167 --------------------------~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~-~~~~~~~-------~~~~ 212 (343)
T 3lrv_A 167 --------------------------AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS-PDQASSR-------FPVD 212 (343)
T ss_dssp --------------------------CCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC-TTSCCEE-------CCCC
T ss_pred --------------------------cCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC-CCCCccE-------Eecc
Confidence 3455679999999999999999 999999999994 4433 33 455
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccce--EEEEEccCCCeEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI--SDIKFANDGQHLL 343 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~s~~g~~l~ 343 (457)
|...|++++|+|++ .+|++++ |+.|++||+++.+.. ..+.. +..|...+ .+++|+|+|++|+
T Consensus 213 h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~g~~l~ 276 (343)
T 3lrv_A 213 EEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT----LAYPT----------YTIPEFKTGTVTYDIDDSGKNMI 276 (343)
T ss_dssp TTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC----BSSCC----------CBC-----CCEEEEECTTSSEEE
T ss_pred CCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc----eeecc----------cccccccccceEEEECCCCCEEE
Confidence 99999999999999 9999999 559999999987532 11111 11122233 4799999999999
Q ss_pred EEe--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC---CCcEEEEEeCCCcEEEEecCCC
Q 012721 344 SRD--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG---DGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 344 s~~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+++ ++.|++|++....+.... ..+ ..+.|++ +...|++++.|+.+.++-....
T Consensus 277 ~~s~~d~~i~v~~~~~~~~~~~~-----~~~---------------~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~ 334 (343)
T 3lrv_A 277 AYSNESNSLTIYKFDKKTKNWTK-----DEE---------------SALCLQSDTADFTDMDVVCGDGGIAAILKTND 334 (343)
T ss_dssp EEETTTTEEEEEEECTTTCSEEE-----EEE---------------EECCC----CCCCEEEEEEETTEEEEEEECSS
T ss_pred EecCCCCcEEEEEEcccccceEe-----cCc---------------eeEecCccccccceeEEEecCCceEEEEecCC
Confidence 854 699999999653332222 111 4678888 8899999999999998865433
No 122
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.96 E-value=4.1e-26 Score=216.98 Aligned_cols=257 Identities=12% Similarity=0.192 Sum_probs=198.1
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.++.+ +++++++|+.||.|++||+.+++.......+ ...|.+++| ++..+.++ ..+
T Consensus 134 ~~v~~~~~----d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~---~~~~l~sg-------------~~d 192 (435)
T 1p22_A 134 KGVYCLQY----DDQKIVSGLRDNTIKIWDKNTLECKRILTGH-TGSVLCLQY---DERVIITG-------------SSD 192 (435)
T ss_dssp CCEEEEEC----CSSEEEEEESSSCEEEEESSSCCEEEEECCC-SSCEEEEEC---CSSEEEEE-------------ETT
T ss_pred CcEEEEEE----CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCC-CCcEEEEEE---CCCEEEEE-------------cCC
Confidence 67888876 6789999999999999999998876665432 344666666 22222211 135
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
+.+++||++.. +++..+ .+|...|.+++|++ ..+++| .|+.|++||++. +...... ..+.+|...|.+
T Consensus 193 g~i~vwd~~~~---~~~~~~-~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~-~~~~~~~----~~~~~~~~~v~~ 261 (435)
T 1p22_A 193 STVRVWDVNTG---EMLNTL-IHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMAS-PTDITLR----RVLVGHRAAVNV 261 (435)
T ss_dssp SCEEEEESSSC---CEEEEE-CCCCSCEEEEECCT--TEEEEEETTSCEEEEECSS-SSCCEEE----EEECCCSSCEEE
T ss_pred CeEEEEECCCC---cEEEEE-cCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCC-CCCceee----eEecCCCCcEEE
Confidence 68999999753 455555 78999999999974 588888 999999999984 3333111 125789999999
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~ 351 (457)
++| ++ ++|++|+.||.|++||+++++.. .. +.+|...|.++.|+ ++++++|+. +.|+
T Consensus 262 ~~~--~~-~~l~s~~~dg~i~vwd~~~~~~~----~~-------------~~~~~~~v~~~~~~--~~~l~~g~~dg~i~ 319 (435)
T 1p22_A 262 VDF--DD-KYIVSASGDRTIKVWNTSTCEFV----RT-------------LNGHKRGIACLQYR--DRLVVSGSSDNTIR 319 (435)
T ss_dssp EEE--ET-TEEEEEETTSEEEEEETTTCCEE----EE-------------EECCSSCEEEEEEE--TTEEEEEETTSCEE
T ss_pred EEe--CC-CEEEEEeCCCeEEEEECCcCcEE----EE-------------EcCCCCcEEEEEeC--CCEEEEEeCCCeEE
Confidence 999 55 89999999999999999987533 22 34567889999984 678888874 9999
Q ss_pred EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc--------eeeEE
Q 012721 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA--------GGITV 423 (457)
Q Consensus 352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~--------~~~~~ 423 (457)
+||+++ ++.+..+.+|...+ .+++| ++.+|++|+.||.|++||+.++.. ....+
T Consensus 320 iwd~~~-~~~~~~~~~h~~~v---------------~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 381 (435)
T 1p22_A 320 LWDIEC-GACLRVLEGHEELV---------------RCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTL 381 (435)
T ss_dssp EEETTT-CCEEEEECCCSSCE---------------EEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred EEECCC-CCEEEEEeCCcCcE---------------EEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeec
Confidence 999986 78888998888765 57777 889999999999999999977631 67788
Q ss_pred ecCCCcceeeeeccCCcceec
Q 012721 424 EAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 424 ~~~~~~v~~~~~~p~~~~~~~ 444 (457)
.+|.++|.+++| ++....+
T Consensus 382 ~~h~~~v~~l~~--~~~~l~s 400 (435)
T 1p22_A 382 VEHSGRVFRLQF--DEFQIVS 400 (435)
T ss_dssp CCCSSCCCCEEE--CSSCEEE
T ss_pred cCCCCCeEEEEe--CCCEEEE
Confidence 999999999999 4444444
No 123
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=6.5e-26 Score=209.28 Aligned_cols=276 Identities=12% Similarity=0.058 Sum_probs=182.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.+++| +++|++|++|+.|+ +++|++..++........ .+..+.+......+.... ..+
T Consensus 20 ~~V~~v~f--s~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~d 80 (355)
T 3vu4_A 20 NPVTDYEF--NQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVAFVT-------------GVK 80 (355)
T ss_dssp CCCCEEEE--CTTSSEEEEECSSE-EEEEEETTEEEEEEEECS---CCCEEEECTTSSEEEEEC-------------SST
T ss_pred CceEEEEE--CCCCCEEEEEcCCE-EEEEecCCcceeeeeecC---CeEEEEEcCCCCEEEEEE-------------CCc
Confidence 88999999 79999999888775 789999887655443322 233344333222111110 013
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
+.+++||..+. +++..+ .+...|.+++++++ .++++.|+.|++||+....+.+.. +.. ....+
T Consensus 81 ~~v~iWd~~~~---~~~~~~--~~~~~v~~v~~~~~--~~~~~~~~~i~i~d~~~~~~~~~~-------~~~---~~~~~ 143 (355)
T 3vu4_A 81 EVVHIWDDVKK---QDVSRI--KVDAPVKDLFLSRE--FIVVSYGDVISVFKFGNPWKRITD-------DIR---FGGVC 143 (355)
T ss_dssp TEEEEEETTTT---EEEEEE--ECSSCEEEEEECSS--EEEEEETTEEEEEESSTTCCBSSC-------CEE---EEEEE
T ss_pred cEEEEEECCCC---cEEEEE--ECCCceEEEEEcCC--EEEEEEcCEEEEEECCCCceeeEE-------ecc---CCceE
Confidence 48999998653 344444 36679999999875 455567889999999843244332 222 34455
Q ss_pred EEecCCccEEEE--EccCCeEEEEEccCCeeeccccccccccccccCc-ccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 274 EFHPIYCNLLAY--SSSRGFVRLVDMRQSALCDHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 274 ~~~p~~~~~l~~--~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
++++ .++++ |+.||.|++||+++++........... ....+ ...+.+|...|++++|+|+|++|++++. ++
T Consensus 144 ~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~--~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~ 218 (355)
T 3vu4_A 144 EFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQ--KAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGT 218 (355)
T ss_dssp EEET---TEEEEEESSCTTCEEEEECCC--------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCS
T ss_pred EEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccc--cccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCC
Confidence 6676 34444 689999999999876421000000000 00011 3446789999999999999999999875 98
Q ss_pred -EEEEeccCCCCceeEee-e-ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee-eEEe-
Q 012721 350 -LKLWDIRMDSTPVATFK-I-HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG-ITVE- 424 (457)
Q Consensus 350 -i~~wd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~-~~~~- 424 (457)
|++||+++ ++.+..+. + |...+ .+++|+||+++|++++.|++|++||+..+.... ..+.
T Consensus 219 ~v~iwd~~~-~~~~~~~~~g~h~~~v---------------~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~ 282 (355)
T 3vu4_A 219 IIRVFKTED-GVLVREFRRGLDRADV---------------VDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKG 282 (355)
T ss_dssp EEEEEETTT-CCEEEEEECTTCCSCE---------------EEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred EEEEEECCC-CcEEEEEEcCCCCCcE---------------EEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccc
Confidence 99999986 78888887 4 76654 699999999999999999999999998663211 1111
Q ss_pred --------------------cCCCcceeeeeccCCcceeccc
Q 012721 425 --------------------AGKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 425 --------------------~~~~~v~~~~~~p~~~~~~~~~ 446 (457)
.+..+...++|+|++.....+-
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~ 324 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWP 324 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEET
T ss_pred eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEe
Confidence 1122346788999987777643
No 124
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=7.3e-26 Score=215.12 Aligned_cols=239 Identities=9% Similarity=0.099 Sum_probs=187.6
Q ss_pred ccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
.|.+.|.+++|++++.++++++.|+.|++||+++++ .+..+..|.
T Consensus 167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~---------------------------~~~~~~~~~-------- 211 (433)
T 3bws_A 167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLA---------------------------YKATVDLTG-------- 211 (433)
T ss_dssp TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCC---------------------------EEEEEECSS--------
T ss_pred ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCce---------------------------EEEEEcCCC--------
Confidence 578899999999999999999999999999998765 345566776
Q ss_pred ccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 110 LEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..+.+++| ++++..+++ ++.|+.|++||+.+++.....
T Consensus 212 ----~~~~~~~~--~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~----------------------------------- 250 (433)
T 3bws_A 212 ----KWSKILLY--DPIRDLVYCSNWISEDISVIDRKTKLEIRKT----------------------------------- 250 (433)
T ss_dssp ----SSEEEEEE--ETTTTEEEEEETTTTEEEEEETTTTEEEEEC-----------------------------------
T ss_pred ----CCeeEEEE--cCCCCEEEEEecCCCcEEEEECCCCcEEEEe-----------------------------------
Confidence 77999999 678887755 558999999999887654321
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--------CCeEEEEEcCCCcceeeeeecC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--------DLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--------d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
.+...+.+++|+|+++.++++ . |+.|++||+. .++....+
T Consensus 251 ---------------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~-~~~~~~~~--- 299 (433)
T 3bws_A 251 ---------------------------DKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD-KEKLIDTI--- 299 (433)
T ss_dssp ---------------------------CCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT-TTEEEEEE---
T ss_pred ---------------------------cCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC-CCcEEeec---
Confidence 123358899999999998886 3 7899999998 45544432
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
.|...+.+++|+|++..++++++.|+.|++||+.+++.. ..+. +...+.+++|+|+|
T Consensus 300 -----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~~--------------~~~~~~~~~~s~dg 356 (433)
T 3bws_A 300 -----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSIP--------------VFDKPNTIALSPDG 356 (433)
T ss_dssp -----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE----EEEE--------------CSSSEEEEEECTTS
T ss_pred -----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE----EEec--------------CCCCCCeEEEcCCC
Confidence 344578899999999446677799999999999987543 2221 24578999999999
Q ss_pred CeEEEEec----------------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 340 QHLLSRDY----------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 340 ~~l~s~~~----------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
++|++++. |.|++||+.+ ++.+..+..+... ..++|+||+++|++++
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~ 419 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT-DTVKEFWEAGNQP----------------TGLDVSPDNRYLVISD 419 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT-TEEEEEEECSSSE----------------EEEEECTTSCEEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCC-CcEEEEecCCCCC----------------ceEEEcCCCCEEEEEE
Confidence 98887653 4899999975 7777777654332 5899999999999887
Q ss_pred C-CCcEEEEecCC
Q 012721 404 Y-SNLLRIFSHGV 415 (457)
Q Consensus 404 ~-dg~i~iw~~~~ 415 (457)
. |+.|++|+++.
T Consensus 420 ~~d~~i~v~~~~~ 432 (433)
T 3bws_A 420 FLDHQIRVYRRDG 432 (433)
T ss_dssp TTTTEEEEEEETT
T ss_pred CCCCeEEEEEecC
Confidence 5 99999999863
No 125
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.6e-24 Score=204.13 Aligned_cols=244 Identities=14% Similarity=0.117 Sum_probs=185.2
Q ss_pred CCEEEEEeCC------CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEE
Q 012721 44 GDYLAVGDRG------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKIN 117 (457)
Q Consensus 44 ~~~latg~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 117 (457)
+..++.++.+ +.|++||+++... ..+.+|. ..|.
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~----------------------------~~l~~~~------------~~v~ 182 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQ----------------------------FVVHRSP------------QPLM 182 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSC----------------------------EEEEEES------------SCEE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCC----------------------------EEEeCCC------------Ccce
Confidence 5566666554 7999999875432 3566677 7899
Q ss_pred EEEEEecCCCCEEEEeeCCC---eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 118 RVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 118 ~v~~~~s~~~~~l~s~s~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
+++| +|+|+.|++++.|+ .|++||+.+++...+
T Consensus 183 ~~~~--Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l------------------------------------------ 218 (415)
T 2hqs_A 183 SPAW--SPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------------------------------------ 218 (415)
T ss_dssp EEEE--CTTSSEEEEEECTTSSCEEEEEETTTCCEEEE------------------------------------------
T ss_pred eeEE--cCCCCEEEEEEecCCCcEEEEEECCCCcEEEe------------------------------------------
Confidence 9999 79999999999875 999999998765432
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
..|...+.+++|+|||+.|+ ++ .++ .|++||+. .++... +..|...+
T Consensus 219 --------------------~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~-~~~~~~--------l~~~~~~~ 269 (415)
T 2hqs_A 219 --------------------ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA-SGQIRQ--------VTDGRSNN 269 (415)
T ss_dssp --------------------ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------CCCCSSCE
T ss_pred --------------------ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECC-CCCEEe--------CcCCCCcc
Confidence 34566899999999999888 55 544 59999998 444432 45677889
Q ss_pred EEEEEecCCccEEEEEcc-CC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-
Q 012721 271 TSAEFHPIYCNLLAYSSS-RG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD- 346 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~- 346 (457)
.+++|+|+| +.|++++. ++ .|.+||+.+++.. .+ ..|...+.+++|+|+|++|++++
T Consensus 270 ~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~~~-----~l-------------~~~~~~~~~~~~spdG~~l~~~~~ 330 (415)
T 2hqs_A 270 TEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGAPQ-----RI-------------TWEGSQNQDADVSSDGKFMVMVSS 330 (415)
T ss_dssp EEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCCE-----EC-------------CCSSSEEEEEEECTTSSEEEEEEE
T ss_pred cceEECCCC-CEEEEEECCCCCcEEEEEECCCCCEE-----EE-------------ecCCCcccCeEECCCCCEEEEEEC
Confidence 999999999 87877775 45 6777888876421 11 12235688999999999999764
Q ss_pred c---CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC---cEEEEecCCCCcee
Q 012721 347 Y---MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN---LLRIFSHGVGSAGG 420 (457)
Q Consensus 347 ~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg---~i~iw~~~~~~~~~ 420 (457)
+ ..|++||+.. ++. ..+..+. .+ .+++|+|||++|++++.++ .|++||+..+ ..
T Consensus 331 ~~g~~~i~~~d~~~-~~~-~~l~~~~-~~---------------~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~--~~ 390 (415)
T 2hqs_A 331 NGGQQHIAKQDLAT-GGV-QVLSSTF-LD---------------ETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR--FK 390 (415)
T ss_dssp CSSCEEEEEEETTT-CCE-EECCCSS-SC---------------EEEEECTTSSEEEEEEEETTEEEEEEEETTSC--CE
T ss_pred cCCceEEEEEECCC-CCE-EEecCCC-Cc---------------CCeEEcCCCCEEEEEEcCCCccEEEEEECCCC--cE
Confidence 2 5899999975 443 3444443 22 5899999999999988877 7999999744 56
Q ss_pred eEEecCCCcceeeeeccCC
Q 012721 421 ITVEAGKNENRKPILQAAP 439 (457)
Q Consensus 421 ~~~~~~~~~v~~~~~~p~~ 439 (457)
..+.+|.+.|.+++|+|.-
T Consensus 391 ~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 391 ARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EECCCSSSEEEEEEECCCC
T ss_pred EEeeCCCCCCcCCcccccc
Confidence 7789999999999999974
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=5e-25 Score=194.76 Aligned_cols=278 Identities=10% Similarity=0.050 Sum_probs=171.4
Q ss_pred EEEEEEEecCCCC---EEEEeeCCCeEEEEEeccc-ceeEEEeecCCC-ceeeeeeccccccccccCCCC-CceeccCCc
Q 012721 116 INRVRWCAAPNGS---MFILSTNDKTIKLWKVRDQ-KVKKIKEMDHFP-FVSSENTLLAEKNFMNEHNPP-SFAHGYHLE 189 (457)
Q Consensus 116 V~~v~~~~s~~~~---~l~s~s~d~~i~vw~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 189 (457)
+.++.| ...+. .++++++ ..|++|+..++ +........+.. .|..+.+.+..-.+++..... ....+....
T Consensus 42 ~~~~~~--~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla 118 (356)
T 2w18_A 42 VSAMFW--ERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALF 118 (356)
T ss_dssp EEEEEE--C----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEEC
T ss_pred Eeeeee--ccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEE
Confidence 455666 23332 4556665 67999999987 223444444443 477777776655555433211 000000000
Q ss_pred cccc-cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 190 WTEN-MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 190 ~~~~-~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
+.++ .....+.. ..+|...|..+ ++++++.++ .|+.|++|++...++.... +..
T Consensus 119 ~spd~~~~~~~l~------------s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s-------~~~ 176 (356)
T 2w18_A 119 CSSDDESEKQVLL------------KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKEN-------QFL 176 (356)
T ss_dssp C------CCEEEE------------EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEE-------EEE
T ss_pred ECCCccccccEEE------------eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeee-------ecc
Confidence 1111 00000000 02333334333 456666663 4999999999645655543 456
Q ss_pred CCCceEEEEEec---CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeE
Q 012721 266 LTEVITSAEFHP---IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHL 342 (457)
Q Consensus 266 ~~~~i~~v~~~p---~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l 342 (457)
|...+..++|+| ++ .+|++++.|++|+|||+++++.. +.+..|. .+...+.+++|+|+|+++
T Consensus 177 ~~~~v~~l~fs~~~g~~-~~LaSgS~D~TIkIWDl~TGk~l----~tL~g~~----------~~v~~v~~vafSpdG~~l 241 (356)
T 2w18_A 177 MPPEETILTFAEVQGMQ-EALLGTTIMNNIVIWNLKTGQLL----KKMHIDD----------SYQASVCHKAYSEMGLLF 241 (356)
T ss_dssp CCCSSCEEEEEEEETST-TEEEEEETTSEEEEEETTTCCEE----EEEECCC-------------CCCEEEEEEETTEEE
T ss_pred CCCceeeEEeeccCCCC-ceEEEecCCCcEEEEECCCCcEE----EEEcCCC----------cceeeeEEEEECCCCCEE
Confidence 888888888888 66 89999999999999999998755 4443310 112468888999999987
Q ss_pred E------------EEe-cCcEEEEeccCCCCceeEee-----eccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 343 L------------SRD-YMNLKLWDIRMDSTPVATFK-----IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 343 ~------------s~~-~~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
+ +|+ |++|++||..+ ++.+..+. +|... .+..+.++.++++++.
T Consensus 242 vs~s~~~~~w~laSGs~D~tIklWd~~t-gk~l~v~~~~~p~Gh~~~-----------------~lsg~~sg~~lASgS~ 303 (356)
T 2w18_A 242 IVLSHPCAKESESLRSPVFQLIVINPKT-TLSVGVMLYCLPPGQAGR-----------------FLEGDVKDHCAAAILT 303 (356)
T ss_dssp EEEC------------CCEEEEEEETTT-TEEEEEEEECCCTTCCCC-----------------EEEEEEETTEEEEEET
T ss_pred EEeccCCCcceeeccCCCcEEEEEECCC-CEEEEEEEeeccCCCcce-----------------eEccccCCCEEEEEcC
Confidence 4 454 38999999975 66665542 33221 1233334789999999
Q ss_pred CCcEEEEecCCCCceeeEEecCCCcce-eeeeccCCcceeccccccccccc
Q 012721 405 SNLLRIFSHGVGSAGGITVEAGKNENR-KPILQAAPRARRSSLSNLTRGLY 454 (457)
Q Consensus 405 dg~i~iw~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~~~~~~~~~~~~~ 454 (457)
|++|+|||+.++ +...++.+|...+. .++|+|+++..++ ++.++..|
T Consensus 304 DgTIkIWDl~tG-k~l~tL~gH~~~vvs~vafSPDG~~LaS--GS~D~TIk 351 (356)
T 2w18_A 304 SGTIAIWDLLLG-QCTALLPPVSDQHWSFVKWSGTDSHLLA--GQKDGNIF 351 (356)
T ss_dssp TSCEEEEETTTC-SEEEEECCC--CCCCEEEECSSSSEEEE--ECTTSCEE
T ss_pred CCcEEEEECCCC-cEEEEecCCCCCeEEEEEECCCCCEEEE--EECCCcEE
Confidence 999999999999 78889999988765 5899999998888 56665554
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=2.6e-23 Score=201.81 Aligned_cols=303 Identities=12% Similarity=0.055 Sum_probs=207.0
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEe--cCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFET--VGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
.+.+++|+|||++|++++.|++|++||+ .+++ .+.++..+
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~---------------------------~~~~i~~g----------- 221 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPT---------------------------KVAEIKIG----------- 221 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCE---------------------------EEEEEECC-----------
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCCCc---------------------------EEEEEecC-----------
Confidence 3889999999999999999999999999 5443 33444432
Q ss_pred ccCcEEEEEEEecC----CCCEEEEee-CCCeEEEEEecccceeEEEeecC----------CCceeeeeecccccccccc
Q 012721 112 IEEKINRVRWCAAP----NGSMFILST-NDKTIKLWKVRDQKVKKIKEMDH----------FPFVSSENTLLAEKNFMNE 176 (457)
Q Consensus 112 ~~~~V~~v~~~~s~----~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 176 (457)
..+..++| +| +|+++++++ .+++|.+||..+++....+.... ...+..+.+++..+.++..
T Consensus 222 --~~p~~va~--sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 222 --IEARSVES--SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp --SEEEEEEE--CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred --CCcceEEe--CCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 45789999 78 999999887 58999999999988777665321 1133444444333222211
Q ss_pred CCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceee
Q 012721 177 HNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFN 254 (457)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~ 254 (457)
. ..++.+.+||........ +.. ..+...+..+.|+|++++|+++ .++.|.+||.. .++...
T Consensus 298 ~-------------~~~g~i~vvd~~~~~~l~-~~~--i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~-tg~l~~ 360 (543)
T 1nir_A 298 V-------------KETGKVLLVNYKDIDNLT-VTS--IGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK-DRRLSA 360 (543)
T ss_dssp E-------------TTTTEEEEEECTTSSSCE-EEE--EECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT-TTEEEE
T ss_pred E-------------CCCCeEEEEEecCCCcce-eEE--eccCcCccCceECCCCCEEEEEecCCCeEEEEECC-CCeEEE
Confidence 1 124578888886532211 111 2356678899999999987654 78999999999 566666
Q ss_pred eeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEE
Q 012721 255 IVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 333 (457)
.+... ...|.+....+ ++|++..+++++. .|++|.+||+.+.+.... .......+..|...+..+
T Consensus 361 ~i~~g---~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~----------~~~~v~~l~~~g~~~~~v 426 (543)
T 1nir_A 361 LVDVG---KTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY----------AWKKVAELQGQGGGSLFI 426 (543)
T ss_dssp EEECS---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTT----------BTSEEEEEECSCSCCCCE
T ss_pred eeccC---CCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchh----------cCeEEEEEEcCCCCceEE
Confidence 65432 12355443333 5787437778776 689999999987311000 001122345566778899
Q ss_pred EEccCCCeEEEEe--------cCcEEEEeccCCCCce-eEee--------eccccccccccccCCCCccccceEEEcCCC
Q 012721 334 KFANDGQHLLSRD--------YMNLKLWDIRMDSTPV-ATFK--------IHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 334 ~~s~~g~~l~s~~--------~~~i~~wd~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
+++|+|++|++++ +++|.+||+.+ .+.. ..+. .+... +..+.|+|||
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~-~~~~~~~~~v~~~~~~~~~~~~---------------~~~~~~~~~g 490 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKN-LDAKYQVLPIAEWADLGEGAKR---------------VVQPEYNKRG 490 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTC-TTSCCEEECHHHHHCCCSSCCE---------------EEEEEECSSS
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCC-CCCCeEEeechhhcccCCCCCc---------------eEeccCCCCC
Confidence 9999999999976 47999999986 4444 4432 11221 2689999999
Q ss_pred cEEEEEe-----CCCcEEEEecCCCCceeeEEecC
Q 012721 397 LHFATGS-----YSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 397 ~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
+.|+++. .|+.|.|||.+++ ++..+++..
T Consensus 491 ~~~~~s~~~~~~~~~~i~v~D~~t~-~~~~~i~~~ 524 (543)
T 1nir_A 491 DEVWFSVWNGKNDSSALVVVDDKTL-KLKAVVKDP 524 (543)
T ss_dssp SEEEEEEECCTTSCCEEEEEETTTT-EEEEEECCT
T ss_pred CEEEEEeecCCCCCCeEEEEECCCc-eEEEeecCC
Confidence 9988763 4799999999999 667777654
No 128
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.94 E-value=3.8e-23 Score=193.63 Aligned_cols=297 Identities=10% Similarity=0.088 Sum_probs=200.8
Q ss_pred cccCCceEEEEECCCCCEE-EEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYL-AVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~l-atg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
+.+...+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+
T Consensus 28 ~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~---------------------------~~~~~~~------- 73 (391)
T 1l0q_A 28 IPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV---------------------------IATVPAG------- 73 (391)
T ss_dssp EECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE---------------------------EEEEECS-------
T ss_pred eecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeE---------------------------EEEEECC-------
Confidence 3345679999999999976 6777899999999987663 2333333
Q ss_pred ccccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..+.+++| ++++++++. ++.|+.|++||+.+++....... ...+.+++|.+....++....
T Consensus 74 ------~~v~~~~~--spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~-------- 135 (391)
T 1l0q_A 74 ------SSPQGVAV--SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNN-------- 135 (391)
T ss_dssp ------SSEEEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEET--------
T ss_pred ------CCccceEE--CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeC--------
Confidence 46999999 789887765 45679999999999877665543 344666776654433322111
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
.++.+++||.... +.+..+ .. ...+.+++|+|+++.+ +++ .++.|++||++ .++....+
T Consensus 136 -----~~~~v~~~d~~~~---~~~~~~-~~-~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~-~~~~~~~~-------- 196 (391)
T 1l0q_A 136 -----GDKTVSVINTVTK---AVINTV-SV-GRSPKGIAVTPDGTKVYVANFDSMSISVIDTV-TNSVIDTV-------- 196 (391)
T ss_dssp -----TTTEEEEEETTTT---EEEEEE-EC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEE--------
T ss_pred -----CCCEEEEEECCCC---cEEEEE-ec-CCCcceEEECCCCCEEEEEeCCCCEEEEEECC-CCeEEEEE--------
Confidence 2458999998643 333333 23 3467999999999887 566 89999999998 55555442
Q ss_pred CCCCceEEEEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
.+...+.+++|+|++ ++|++++ .++.|++||+++++.. ..+.. ...+.+++|+|++++
T Consensus 197 ~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~ 257 (391)
T 1l0q_A 197 KVEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTGTNKIT----ARIPV--------------GPDPAGIAVTPDGKK 257 (391)
T ss_dssp ECSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETTTTEEE----EEEEC--------------CSSEEEEEECTTSSE
T ss_pred ecCCCccceEECCCC-CEEEEEecCcCCCcEEEEECCCCeEE----EEEec--------------CCCccEEEEccCCCE
Confidence 245678999999999 8787777 6899999999987543 22222 135789999999998
Q ss_pred EE-EEe-cCcEEEEeccCCCCceeEeeecccccccc--ccccCCCCccccceEEEcCC------C--cEEEEEeCCCcEE
Q 012721 342 LL-SRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKL--CDLYNNDSIFDKFECSVSGD------G--LHFATGSYSNLLR 409 (457)
Q Consensus 342 l~-s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~s~d------~--~~l~s~~~dg~i~ 409 (457)
|+ +++ ++.|++||+.+ ++.+..+..+....... .........+.+......+. . ..+...+.|..++
T Consensus 258 l~~s~~~d~~v~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (391)
T 1l0q_A 258 VYVALSFXNTVSVIDTAT-NTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEW 336 (391)
T ss_dssp EEEEETTTTEEEEEETTT-TEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEE
T ss_pred EEEEcCCCCEEEEEECCC-CcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEE
Confidence 85 555 49999999986 77777776665432100 00000001111111222211 1 3466667789999
Q ss_pred EEecCCC
Q 012721 410 IFSHGVG 416 (457)
Q Consensus 410 iw~~~~~ 416 (457)
+|++.++
T Consensus 337 ~W~~~~g 343 (391)
T 1l0q_A 337 KWDFGDG 343 (391)
T ss_dssp EEECSSS
T ss_pred EEECCCC
Confidence 9999887
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=5.1e-25 Score=207.47 Aligned_cols=182 Identities=13% Similarity=0.065 Sum_probs=136.6
Q ss_pred cCCCCCeeEEEeCCCCCEEEEe-CCC---eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE-EEccC
Q 012721 215 HAHDFNINSISNNSDCETFVSA-DDL---RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSR 289 (457)
Q Consensus 215 ~~h~~~v~~~~~~~~~~~l~~~-~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~d 289 (457)
.+|...+.+++|+|+|+.|+++ .++ .|++||+. .++... +..|...+.+++|+|+| +.|+ +++.+
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~-tg~~~~--------l~~~~~~~~~~~~spdg-~~la~~~~~~ 244 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLA-NGAVRQ--------VASFPRHNGAPAFSPDG-SKLAFALSKT 244 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETT-TCCEEE--------EECCSSCEEEEEECTTS-SEEEEEECTT
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECC-CCcEEE--------eecCCCcccCEEEcCCC-CEEEEEEecC
Confidence 4577789999999999999988 664 99999998 454443 34567789999999999 7666 66665
Q ss_pred C--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--C--cEEEEeccCCCCcee
Q 012721 290 G--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--M--NLKLWDIRMDSTPVA 363 (457)
Q Consensus 290 g--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~--~i~~wd~~~~~~~~~ 363 (457)
+ .|++||+.+++.. . +..|...+.+++|+|+|++|+.+++ + .|++||+.. ++ ..
T Consensus 245 g~~~i~~~d~~~~~~~-----~-------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~-~~-~~ 304 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIR-----Q-------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING-GA-PQ 304 (415)
T ss_dssp SSCEEEEEETTTCCEE-----E-------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS-SC-CE
T ss_pred CCceEEEEECCCCCEE-----e-------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC-CC-EE
Confidence 5 4999999886432 1 1234567999999999999987653 4 677778764 33 33
Q ss_pred EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC---CcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS---NLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
.+..+...+ .+++|+|||++|++++.+ ..|++||+.+++ . ..+..+. .+..++|+|++.
T Consensus 305 ~l~~~~~~~---------------~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~-~-~~l~~~~-~~~~~~~spdg~ 366 (415)
T 2hqs_A 305 RITWEGSQN---------------QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG-V-QVLSSTF-LDETPSLAPNGT 366 (415)
T ss_dssp ECCCSSSEE---------------EEEEECTTSSEEEEEEECSSCEEEEEEETTTCC-E-EECCCSS-SCEEEEECTTSS
T ss_pred EEecCCCcc---------------cCeEECCCCCEEEEEECcCCceEEEEEECCCCC-E-EEecCCC-CcCCeEEcCCCC
Confidence 444343322 579999999999988864 589999999883 3 4455554 899999999998
Q ss_pred ceec
Q 012721 441 ARRS 444 (457)
Q Consensus 441 ~~~~ 444 (457)
...+
T Consensus 367 ~l~~ 370 (415)
T 2hqs_A 367 MVIY 370 (415)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7666
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.9e-23 Score=202.67 Aligned_cols=267 Identities=9% Similarity=0.059 Sum_probs=200.6
Q ss_pred EECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEE
Q 012721 39 EFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINR 118 (457)
Q Consensus 39 ~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 118 (457)
+|+|++.++++++.|++|.+||..+++. +.++..+. . +..
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~---------------------------~~~i~~g~------------~-~~~ 183 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKI---------------------------VKVIDTGY------------A-VHI 183 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECST------------T-EEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceE---------------------------EEEEecCc------------c-cce
Confidence 3889999999999999999999887763 34555332 2 788
Q ss_pred EEEEecCCCCEEEEeeCCCeEEEEEe--cccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccce
Q 012721 119 VRWCAAPNGSMFILSTNDKTIKLWKV--RDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMAT 196 (457)
Q Consensus 119 v~~~~s~~~~~l~s~s~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 196 (457)
++| +|+|++|++++.|+.|++||+ .+++....+.
T Consensus 184 v~~--spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~------------------------------------------ 219 (543)
T 1nir_A 184 SRM--SASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK------------------------------------------ 219 (543)
T ss_dssp EEE--CTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE------------------------------------------
T ss_pred EEE--CCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe------------------------------------------
Confidence 999 899999999999999999999 6655433221
Q ss_pred EEEeccCccccccceeeccCCCCCeeEEEeCC----CCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCccc---CCC
Q 012721 197 KIANVGNSVHARCQKVYPHAHDFNINSISNNS----DCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLT 267 (457)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~ 267 (457)
+...+..++|+| +|++++++ .+++|.+||.. ..+.++.+........ -|.
T Consensus 220 --------------------~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~-t~~~~~~i~~~g~~~~~~~~~~ 278 (543)
T 1nir_A 220 --------------------IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE-TLEPKQIVSTRGMTVDTQTYHP 278 (543)
T ss_dssp --------------------CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT-TCCEEEEEECCEECSSSCCEES
T ss_pred --------------------cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc-ccccceeecccCcccCcccccc
Confidence 233578999999 99999887 58999999998 5666666543211111 122
Q ss_pred -CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 268 -EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 268 -~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
..+..+.++|+++.++++...++.|.+||+.+.+... ...+ .+...+..+.|+|+|+++++++
T Consensus 279 ~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~i--------------~~~~~~~~~~~spdg~~l~va~ 342 (543)
T 1nir_A 279 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTSI--------------GAAPFLHDGGWDSSHRYFMTAA 342 (543)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEEE--------------ECCSSCCCEEECTTSCEEEEEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEEe--------------ccCcCccCceECCCCCEEEEEe
Confidence 3788999999886788888899999999998764221 0011 1234577899999999887653
Q ss_pred --cCcEEEEeccCCCCceeEeee----ccccccccccccCCCCccccceEE-EcCC-CcEEEEEe-CCCcEEEEecCC--
Q 012721 347 --YMNLKLWDIRMDSTPVATFKI----HEHLRPKLCDLYNNDSIFDKFECS-VSGD-GLHFATGS-YSNLLRIFSHGV-- 415 (457)
Q Consensus 347 --~~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~-~s~d-~~~l~s~~-~dg~i~iw~~~~-- 415 (457)
+++|.+||+.+ ++++..+.. |.+. .+. ++|+ +..++++. .|++|.+||+.+
T Consensus 343 ~~~~~v~v~D~~t-g~l~~~i~~g~~ph~g~-----------------g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~ 404 (543)
T 1nir_A 343 NNSNKVAVIDSKD-RRLSALVDVGKTPHPGR-----------------GANFVHPKYGPVWSTSHLGDGSISLIGTDPKN 404 (543)
T ss_dssp GGGTEEEEEETTT-TEEEEEEECSSSBCCTT-----------------CEEEEETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred cCCCeEEEEECCC-CeEEEeeccCCCCCCCC-----------------CcccCCCCCccEEEeccCCCceEEEEEeCCCC
Confidence 39999999986 777777764 3221 223 4677 66677765 589999999998
Q ss_pred -----CCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 416 -----GSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 416 -----~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
. +.+.++.+|...+..+++||+++...++
T Consensus 405 ~~~~~~-~~v~~l~~~g~~~~~v~~~pdg~~l~v~ 438 (543)
T 1nir_A 405 HPQYAW-KKVAELQGQGGGSLFIKTHPKSSHLYVD 438 (543)
T ss_dssp CTTTBT-SEEEEEECSCSCCCCEECCTTCCEEEEC
T ss_pred CchhcC-eEEEEEEcCCCCceEEEcCCCCCcEEEe
Confidence 4 7789999999999999999999888874
No 131
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.4e-23 Score=213.31 Aligned_cols=282 Identities=9% Similarity=0.072 Sum_probs=196.9
Q ss_pred CCceEEEEECCCCCEEEEEeC-CC-----eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc---
Q 012721 32 VDIVSAIEFDKTGDYLAVGDR-GG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP--- 102 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~-dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--- 102 (457)
...|.+++|||||++||+++. |+ .|++||+.+++.. ..+..+..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~---------------------------~~~~~~~~~~~ 88 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR---------------------------LLVDSKVVLPG 88 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE---------------------------EEECGGGTC--
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee---------------------------Eccchhhcccc
Confidence 557999999999999999988 88 8999999887642 11111110
Q ss_pred ---------cccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEeccc---ceeEEEeecCCCceeeeeecccc
Q 012721 103 ---------EFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQ---KVKKIKEMDHFPFVSSENTLLAE 170 (457)
Q Consensus 103 ---------~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 170 (457)
.......+.....|.+++| +|||++|++++. +.|++||+.++ ....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l------------------ 147 (741)
T 2ecf_A 89 TETLSDEEKARRERQRIAAMTGIVDYQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQL------------------ 147 (741)
T ss_dssp ------------------CCEESCCCEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBC------------------
T ss_pred cccccchhhhhhhhhhhccccCcceeEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEc------------------
Confidence 0000000000023788999 899999999886 89999999876 33211
Q ss_pred ccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCc
Q 012721 171 KNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISD 250 (457)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~ 250 (457)
..|...+.+++|+|||++|+++.++.|++||+. .+
T Consensus 148 --------------------------------------------~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~-~g 182 (741)
T 2ecf_A 148 --------------------------------------------THGEGFATDAKLSPKGGFVSFIRGRNLWVIDLA-SG 182 (741)
T ss_dssp --------------------------------------------CCSSSCEEEEEECTTSSEEEEEETTEEEEEETT-TT
T ss_pred --------------------------------------------ccCCcccccccCCCCCCEEEEEeCCcEEEEecC-CC
Confidence 456678999999999999999866799999998 45
Q ss_pred ceeeeeecCCCcccCCCC----------------ceEEEEEecCCccEEEEEccCC------------------------
Q 012721 251 QCFNIVDMKPSNMDDLTE----------------VITSAEFHPIYCNLLAYSSSRG------------------------ 290 (457)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~----------------~i~~v~~~p~~~~~l~~~~~dg------------------------ 290 (457)
....+. ..+.. .+.+++|+||| +.|++++.|+
T Consensus 183 ~~~~~~-------~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~ 254 (741)
T 2ecf_A 183 RQMQLT-------ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADRTDVIEQRYP 254 (741)
T ss_dssp EEEECC-------CCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSCEEEEEEECC
T ss_pred CEEEec-------cCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCcccceEeecC
Confidence 544432 11211 14779999999 8888887665
Q ss_pred ---------eEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe------cCcEEEEe
Q 012721 291 ---------FVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD------YMNLKLWD 354 (457)
Q Consensus 291 ---------~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~------~~~i~~wd 354 (457)
.|.+||+.+ ++.. .+... ..|...+..++| |||++|+.+. +..|++||
T Consensus 255 ~~g~~~~~~~l~~~d~~~~~~~~----~~~~~-----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 255 AAGDANVQVKLGVISPAEQAQTQ----WIDLG-----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp BTTSCCCEEEEEEECSSTTCCCE----EECCC-----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCCCCeeEEEEEECCCCCceE----EecCC-----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 788888877 6432 11100 134567999999 9999998642 26799999
Q ss_pred ccCCCCceeEeeecccc-ccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee
Q 012721 355 IRMDSTPVATFKIHEHL-RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (457)
Q Consensus 355 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 433 (457)
+.+ ++....+..+... +. .+..++|+|||+++++++.||.++||.+..... ...+..+...+..+
T Consensus 319 ~~~-g~~~~~~~~~~~~~~~------------~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~ 384 (741)
T 2ecf_A 319 LAS-NQQRVLAHETSPTWVP------------LHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDEL 384 (741)
T ss_dssp TTT-CCEEEEEEEECSSCCC------------CCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEE
T ss_pred CCC-CceEEEEEcCCCCcCC------------cCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeE
Confidence 975 6666555554421 10 014789999999999999999888888763324 67777888888887
Q ss_pred -eeccCCcceec
Q 012721 434 -ILQAAPRARRS 444 (457)
Q Consensus 434 -~~~p~~~~~~~ 444 (457)
.|+|++.....
T Consensus 385 ~~~s~dg~~l~~ 396 (741)
T 2ecf_A 385 LAVDEKAGLAYF 396 (741)
T ss_dssp EEEETTTTEEEE
T ss_pred eEEeCCCCEEEE
Confidence 59999975543
No 132
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.92 E-value=4.2e-23 Score=185.12 Aligned_cols=253 Identities=11% Similarity=0.115 Sum_probs=179.5
Q ss_pred EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEEecCCCC
Q 012721 49 VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGS 128 (457)
Q Consensus 49 tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~ 128 (457)
.++.++.|++||+.+++. ..+..|. ..|.+++| +|+++
T Consensus 17 ~~~~~~~i~~~d~~~~~~----------------------------~~~~~~~------------~~v~~~~~--spdg~ 54 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKM----------------------------RVVWQTP------------ELFEAPNW--SPDGK 54 (297)
T ss_dssp -CCCCEEEEEEETTTTEE----------------------------EEEEEES------------SCCEEEEE--CTTSS
T ss_pred CCCcceeEEEEeCCCCce----------------------------eeeccCC------------cceEeeEE--CCCCC
Confidence 346789999999987653 2344455 78999999 78999
Q ss_pred EEEEeeCCCeEEEEEecc-cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcccc
Q 012721 129 MFILSTNDKTIKLWKVRD-QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (457)
Q Consensus 129 ~l~s~s~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 207 (457)
+|++++ ++.|.+||+.+ ++......
T Consensus 55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~----------------------------------------------------- 80 (297)
T 2ojh_A 55 YLLLNS-EGLLYRLSLAGDPSPEKVDT----------------------------------------------------- 80 (297)
T ss_dssp EEEEEE-TTEEEEEESSSCCSCEECCC-----------------------------------------------------
T ss_pred EEEEEc-CCeEEEEeCCCCCCceEecc-----------------------------------------------------
Confidence 999876 78999999988 65443210
Q ss_pred ccceeeccCCCCCeeEEEeCCCCCEEEEe-CC--CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 208 RCQKVYPHAHDFNINSISNNSDCETFVSA-DD--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 208 ~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
..+...+.+++|+|++++|+++ .+ +...||.++........ +..+ ..+..++|+|++ +.|+
T Consensus 81 -------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~-~~~~~~~~spdg-~~l~ 144 (297)
T 2ojh_A 81 -------GFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRL-------MTKN-LPSYWHGWSPDG-KSFT 144 (297)
T ss_dssp -------TTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------CCSS-SSEEEEEECTTS-SEEE
T ss_pred -------ccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------eecC-CCccceEECCCC-CEEE
Confidence 1224578899999999999887 33 44555554322222222 2222 348899999999 6665
Q ss_pred -EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCCCCc
Q 012721 285 -YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP 361 (457)
Q Consensus 285 -~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~ 361 (457)
+++.++.+++|++...... ... +..|...+.+++|+|+|++|+.++ ++.+++|+++..+..
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~---~~~-------------~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~ 208 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGV---ETR-------------LTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSS 208 (297)
T ss_dssp EEEEETTEEEEEEEETTTCC---EEE-------------CCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred EEECCCCceEEEEEECCCCc---ceE-------------cccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCC
Confidence 7888999999996532100 011 123456789999999999888654 489999998744566
Q ss_pred eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-----------CcEEEEecCCCCce-eeEEecCCCc
Q 012721 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----------NLLRIFSHGVGSAG-GITVEAGKNE 429 (457)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----------g~i~iw~~~~~~~~-~~~~~~~~~~ 429 (457)
+..+..+...+ ..++|+|++++|++++.+ +.|++||+.+++.. +..+.+|...
T Consensus 209 ~~~~~~~~~~~---------------~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 273 (297)
T 2ojh_A 209 VERITDSAYGD---------------WFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGT 273 (297)
T ss_dssp EEECCCCSEEE---------------EEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTT
T ss_pred cEEEecCCccc---------------CCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcc
Confidence 66666555432 579999999999988876 56999999988432 3344588999
Q ss_pred ceeeeeccCCcceec
Q 012721 430 NRKPILQAAPRARRS 444 (457)
Q Consensus 430 v~~~~~~p~~~~~~~ 444 (457)
+..+.|+|++....+
T Consensus 274 ~~~~~~spdg~~l~~ 288 (297)
T 2ojh_A 274 MNSPNWSPDGDEFAY 288 (297)
T ss_dssp SCSCCBCTTSSEEEE
T ss_pred cccceECCCCCEEEE
Confidence 999999999987665
No 133
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.91 E-value=1.5e-21 Score=179.03 Aligned_cols=277 Identities=10% Similarity=0.058 Sum_probs=171.7
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC-CeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTND-KTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.+++| ++++++|++++.+ +.|.+|++. ++.............+..++|++....++....
T Consensus 38 ~~~~~~~~--spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------------ 103 (343)
T 1ri6_A 38 GQVQPMVV--SPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------------ 103 (343)
T ss_dssp SCCCCEEE--CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------------
T ss_pred CCCceEEE--CCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------------
Confidence 56888999 7899988888876 999999998 666554444333334555666543332222111
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeee--ecCCCcccCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIV--DMKPSNMDDL 266 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~ 266 (457)
.++.+.+|+++.....+....+ . ....+.+++|+|++++++++ .++.|++||+...+...... .. ....
T Consensus 104 -~~~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~----~~~~ 176 (343)
T 1ri6_A 104 -NAGNVSVTRLEDGLPVGVVDVV-E-GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV----TTVE 176 (343)
T ss_dssp -TTTEEEEEEEETTEEEEEEEEE-C-CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE----ECST
T ss_pred -CCCeEEEEECCCCccccccccc-c-CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc----ccCC
Confidence 1457999998522223333333 2 33458899999999877765 79999999998424333211 00 1112
Q ss_pred CCceEEEEEecCCccEE-EEEccCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 267 TEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
...+..++|+|++ +++ +++..++.|.+||+.. ++... ...... .+.. ......+..++|+|+|++|+
T Consensus 177 ~~~~~~~~~~pdg-~~l~~~~~~~~~i~~~~~~~~~g~~~~--~~~~~~---~~~~----~~~~~~~~~i~~s~dg~~l~ 246 (343)
T 1ri6_A 177 GAGPRHMVFHPNE-QYAYCVNELNSSVDVWELKDPHGNIEC--VQTLDM---MPEN----FSDTRWAADIHITPDGRHLY 246 (343)
T ss_dssp TCCEEEEEECTTS-SEEEEEETTTTEEEEEESSCTTSCCEE--EEEEEC---SCTT----CCSCCCEEEEEECTTSSEEE
T ss_pred CCCcceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCcEEE--Eeeccc---cCcc----ccccCCccceEECCCCCEEE
Confidence 3567889999999 655 5555899999999954 32110 011110 0000 01123577899999999887
Q ss_pred EEe--cCcEEEEeccCCC---CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecC--C
Q 012721 344 SRD--YMNLKLWDIRMDS---TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHG--V 415 (457)
Q Consensus 344 s~~--~~~i~~wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~--~ 415 (457)
++. ++.|.+||+.... +.+..+..+... ..++|+|++++|++++ .++.|.+|+++ +
T Consensus 247 v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~ 310 (343)
T 1ri6_A 247 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQP----------------RGFNVDHSGKYLIAAGQKSHHISVYEIVGEQ 310 (343)
T ss_dssp EEETTTTEEEEEEECTTSCCEEEEEEEECSSSC----------------CCEEECTTSSEEEEECTTTCEEEEEEEETTT
T ss_pred EEecCCCEEEEEEEcCCCCceEEeeeecCCCcc----------------ceEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 543 4999999997312 223333333321 5899999999888887 58999999554 5
Q ss_pred CCc-eeeEEecCCCcceeeeeccC
Q 012721 416 GSA-GGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 416 ~~~-~~~~~~~~~~~v~~~~~~p~ 438 (457)
++. ....+.. .....+++|.|+
T Consensus 311 g~~~~~~~~~~-g~~p~~i~~~~~ 333 (343)
T 1ri6_A 311 GLLHEKGRYAV-GQGPMWVVVNAH 333 (343)
T ss_dssp TEEEEEEEEEC-SSSCCEEEEEEE
T ss_pred ceeeEcccccc-CCCCeeEEEEcc
Confidence 521 1222333 244566677664
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=1.3e-21 Score=180.34 Aligned_cols=279 Identities=10% Similarity=0.019 Sum_probs=197.5
Q ss_pred ccCCceEEEEECCCCCEEEEEeC-------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDR-------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEP 102 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 102 (457)
.....+..++|+|+|++|++++. ++.|.+||..+++. +..+...
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~-- 88 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV---------------------------TQAIHND-- 88 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE---------------------------EEEEEES--
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE---------------------------EEEEecC--
Confidence 35678899999999998888774 56899999887763 2222221
Q ss_pred cccccccccccCcEEEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 103 EFDYLKSLEIEEKINRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
..+..++| ++++++++. ...++.|.+||..+++....+......
T Consensus 89 -----------~~~~~~~~--s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---------------------- 133 (353)
T 3vgz_A 89 -----------LKPFGATI--NNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRK---------------------- 133 (353)
T ss_dssp -----------SCCCSEEE--ETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCC----------------------
T ss_pred -----------CCcceEEE--CCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCc----------------------
Confidence 34667888 688885554 556799999999988765544321100
Q ss_pred ceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe---CCCeEEEEEcCCCcceeeeeec
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA---DDLRINLWNLEISDQCFNIVDM 258 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~ 258 (457)
.. .......+.+++|+|+++.++++ .++.|.+||.. .++....+
T Consensus 134 --------------------------~~----~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~-~~~~~~~~-- 180 (353)
T 3vgz_A 134 --------------------------RT----EEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGG-NIKLKTAI-- 180 (353)
T ss_dssp --------------------------CC----SSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETT-TTEEEEEE--
T ss_pred --------------------------cc----cccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCC-CCceEEEe--
Confidence 00 00111136789999999977765 37899999998 55555442
Q ss_pred CCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
..+...+.+++|+|++ +.+++++.++.|.+||+.+++.. ..+.. . ..++...+..++|+|+
T Consensus 181 -----~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~~~----~~~~~-~--------~~~~~~~~~~~~~s~d 241 (353)
T 3vgz_A 181 -----QNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNKIL----SRKKL-L--------DDGKEHFFINISLDTA 241 (353)
T ss_dssp -----CCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTEEE----EEEEC-C--------CSSSCCCEEEEEEETT
T ss_pred -----cCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCeEE----EEEEc-C--------CCCCCcccceEEECCC
Confidence 3234457789999999 88888999999999999987644 12111 0 0122356788999999
Q ss_pred CCeEEEEe-c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCC
Q 012721 339 GQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 415 (457)
Q Consensus 339 g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~ 415 (457)
|++++.++ + +.|.+||+.+ ++.+..+..... ..++|+||+++++.++ .++.|.+||+.+
T Consensus 242 g~~l~~~~~~~~~v~~~d~~~-~~~~~~~~~~~~-----------------~~~~~s~dg~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 242 RQRAFITDSKAAEVLVVDTRN-GNILAKVAAPES-----------------LAVLFNPARNEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TTEEEEEESSSSEEEEEETTT-CCEEEEEECSSC-----------------CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred CCEEEEEeCCCCEEEEEECCC-CcEEEEEEcCCC-----------------ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence 99887654 3 8999999975 677766664432 3799999999766655 689999999998
Q ss_pred CCceeeEEecCCCcceeeeeccCCcceec
Q 012721 416 GSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 416 ~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+ +....+... ..+..++|+|++.....
T Consensus 304 ~-~~~~~~~~~-~~~~~~~~s~dg~~l~v 330 (353)
T 3vgz_A 304 Y-KVVKTFDTP-THPNSLALSADGKTLYV 330 (353)
T ss_dssp T-EEEEEEECC-SEEEEEEECTTSCEEEE
T ss_pred C-eEEEEEecC-CCCCeEEEcCCCCEEEE
Confidence 8 555555543 46789999999985544
No 135
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=8.9e-22 Score=206.83 Aligned_cols=181 Identities=8% Similarity=0.060 Sum_probs=144.1
Q ss_pred CCCCeeEEEeC-CCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCC-ceEEEEEecCCccEEEEEccCCeEE-
Q 012721 217 HDFNINSISNN-SDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTE-VITSAEFHPIYCNLLAYSSSRGFVR- 293 (457)
Q Consensus 217 h~~~v~~~~~~-~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~v~~~p~~~~~l~~~~~dg~i~- 293 (457)
|...+.+++|+ |+|+.|+++.++.|++|++. .+.... +..|.. .+..++|+ +| +.|++++.++.+.
T Consensus 294 ~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~-~~~~~~--------~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~ 362 (1045)
T 1k32_A 294 SIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVS-GTYVLK--------VPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLG 362 (1045)
T ss_dssp ECGGGGEEEEEECGGGCEEEEETTEEEEECTT-SSBEEE--------CSCCSCEEEEEECSS-SE-EEEEEEETTEEEEE
T ss_pred cccccceeeecCCCCCEEEEEEcCEEEEEcCC-CCceEE--------ccCCCcceEEeeeEc-CC-CeEEEEECCCceEE
Confidence 34468999999 99999998878899999988 444332 345666 89999999 98 8888888888888
Q ss_pred EEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccc
Q 012721 294 LVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 294 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
+||+.+++.. .+ .+|...+..++|+|||++|++++. +.|++||+.+ ++.......|...+
T Consensus 363 ~~d~~~~~~~----~l--------------~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t-g~~~~~~~~~~~~v 423 (1045)
T 1k32_A 363 IYDYRTGKAE----KF--------------EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET-GKPTVIERSREAMI 423 (1045)
T ss_dssp EEETTTCCEE----EC--------------CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT-CCEEEEEECSSSCC
T ss_pred EEECCCCCce----Ee--------------cCCccceeeeEECCCCCEEEEECCCCeEEEEECCC-CceEEeccCCCCCc
Confidence 8998875422 11 134567999999999999998875 8999999975 66666665666543
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEEeCCC----------cEEEEecCCCCceeeEEecCCCcceeeeeccCCcce
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN----------LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRAR 442 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg----------~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 442 (457)
..++|+|||++|++++.++ .|++||+.++ + ...+..|...+..++|+|++...
T Consensus 424 ---------------~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g-~-~~~l~~~~~~~~~~~~spdG~~l 486 (1045)
T 1k32_A 424 ---------------TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR-K-IFAATTENSHDYAPAFDADSKNL 486 (1045)
T ss_dssp ---------------CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT-E-EEECSCSSSBEEEEEECTTSCEE
T ss_pred ---------------cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC-c-EEEeeCCCcccCCceEcCCCCEE
Confidence 5899999999999887654 8999999988 3 66778888889999999999866
Q ss_pred ec
Q 012721 443 RS 444 (457)
Q Consensus 443 ~~ 444 (457)
.+
T Consensus 487 ~~ 488 (1045)
T 1k32_A 487 YY 488 (1045)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 136
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.91 E-value=2.5e-21 Score=176.92 Aligned_cols=276 Identities=10% Similarity=0.072 Sum_probs=178.9
Q ss_pred CCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
...+ +++|+|+|++|++++. ++.|.+||..+++. ....+..+.
T Consensus 40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~--------------------------~~~~~~~~~--------- 83 (331)
T 3u4y_A 40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPP--------------------------KVVAIQEGQ--------- 83 (331)
T ss_dssp CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSC--------------------------EEEEEEECS---------
T ss_pred CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCce--------------------------eEEecccCC---------
Confidence 4556 9999999997766655 88999999987763 123444444
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCC---eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDK---TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
.+..+++| ++++++++++..++ .|.+||+.+++......
T Consensus 84 ---~~~~~~~~--s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~--------------------------------- 125 (331)
T 3u4y_A 84 ---SSMADVDI--TPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP--------------------------------- 125 (331)
T ss_dssp ---SCCCCEEE--CTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE---------------------------------
T ss_pred ---CCccceEE--CCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE---------------------------------
Confidence 44555899 78999988655553 89999998876654321
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCe-EEEEEcCCCcceeeeeecCCCccc
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLR-INLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~-i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
......+++|+|+|++++++ .++. |.+|++...+...... . ...
T Consensus 126 -----------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~---~~~ 172 (331)
T 3u4y_A 126 -----------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-Q---EFI 172 (331)
T ss_dssp -----------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-E---EEE
T ss_pred -----------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-C---ccc
Confidence 12245799999999866554 6677 9999998444332210 0 011
Q ss_pred CCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 265 DLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
.....+..++|+|+| + +++++..++.|.+||+.+++... ....+.. ...+..++|+|+|++|+
T Consensus 173 ~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~~~--------------~~~~~~~~~spdg~~l~ 236 (331)
T 3u4y_A 173 SGGTRPFNITFTPDG-NFAFVANLIGNSIGILETQNPENIT-LLNAVGT--------------NNLPGTIVVSRDGSTVY 236 (331)
T ss_dssp CSSSSEEEEEECTTS-SEEEEEETTTTEEEEEECSSTTSCE-EEEEEEC--------------SSCCCCEEECTTSSEEE
T ss_pred cCCCCccceEECCCC-CEEEEEeCCCCeEEEEECCCCcccc-eeeeccC--------------CCCCceEEECCCCCEEE
Confidence 233557899999999 6 55666678999999998875410 0112221 24577899999999887
Q ss_pred EEe--cCcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCCc
Q 012721 344 SRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGSA 418 (457)
Q Consensus 344 s~~--~~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~~ 418 (457)
.++ ++.|.+||+.+ ++. +..+..+-..- .........++|+||+++|++++. ++.|.+||+...
T Consensus 237 v~~~~~~~i~~~d~~~-~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~-- 305 (331)
T 3u4y_A 237 VLTESTVDVFNFNQLS-GTLSFVKSFGHGLLID--------PRPLFGANQMALNKTETKLFISANISRELKVFTISGK-- 305 (331)
T ss_dssp EECSSEEEEEEEETTT-TEEEEEEEEECCCCCC--------CGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC--
T ss_pred EEEcCCCEEEEEECCC-CceeeecccccccccC--------CCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC--
Confidence 654 38899999975 544 33222220000 001111135899999998876655 569999999865
Q ss_pred eeeEEecCCCcceeeeeccCCcc
Q 012721 419 GGITVEAGKNENRKPILQAAPRA 441 (457)
Q Consensus 419 ~~~~~~~~~~~v~~~~~~p~~~~ 441 (457)
......+....-....++|++..
T Consensus 306 ~~~~~~~~~~~g~~~~~~~~~~~ 328 (331)
T 3u4y_A 306 VVGYVAGIEANGGIAICHPDKHN 328 (331)
T ss_dssp EEEECTTCCCBSCEEECCCC---
T ss_pred cccceecccccCCeEEECCcccc
Confidence 33444455555556667777654
No 137
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=1.2e-22 Score=205.68 Aligned_cols=318 Identities=9% Similarity=-0.010 Sum_probs=200.3
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
..+.+++|+|||+++++ +.||+|++||+.+++. ...+.+|...
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~---------------------------~~~~~~~~~~--------- 59 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTS---------------------------TVLIEGKKIE--------- 59 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCC---------------------------EEEECTTTTT---------
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcE---------------------------EEEecccccc---------
Confidence 34788999999998876 7899999999988764 2334444410
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCC---------CeEEEEEecccceeEEEeecCC-CceeeeeeccccccccccCCCCCc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHF-PFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
...|.+++| +|||++|++++.+ +.|.+||+.+++...+...... ..+..++|
T Consensus 60 ~~~v~~~~~--SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~---------------- 121 (723)
T 1xfd_A 60 SLRAIRYEI--SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGW---------------- 121 (723)
T ss_dssp TTTCSEEEE--CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCB----------------
T ss_pred ccccceEEE--CCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEE----------------
Confidence 014899999 8999999998764 7888999998876332211111 11333333
Q ss_pred eeccCCcc---ccccceEEEeccCccccccceeeccCCCC------------------CeeEEEeCCCCCEEEEe-CCC-
Q 012721 183 AHGYHLEW---TENMATKIANVGNSVHARCQKVYPHAHDF------------------NINSISNNSDCETFVSA-DDL- 239 (457)
Q Consensus 183 ~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~~~~~~l~~~-~d~- 239 (457)
+++|.. ...+.+++|+..... ..+.. ..+.. .+.+++|+|||+.|+++ .|+
T Consensus 122 --SPdG~~la~~~~~~i~~~~~~~g~---~~~~~-~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~ 195 (723)
T 1xfd_A 122 --GPKGQQLIFIFENNIYYCAHVGKQ---AIRVV-STGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS 195 (723)
T ss_dssp --CSSTTCEEEEETTEEEEESSSSSC---CEEEE-CCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred --CCCCCEEEEEECCeEEEEECCCCc---eEEEe-cCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence 444431 223578888886532 22222 22222 23789999999999887 442
Q ss_pred ---------------------------------eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE
Q 012721 240 ---------------------------------RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (457)
Q Consensus 240 ---------------------------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~ 286 (457)
.|++||+. .+.....+... ..+..+...+..++|+||| ++|++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~SpDg-~~l~~~ 272 (723)
T 1xfd_A 196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLN-GPTHDLEMMPP-DDPRMREYYITMVKWATST-KVAVTW 272 (723)
T ss_dssp TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESS-SSCCCEECCCC-CCGGGSSEEEEEEEESSSS-EEEEEE
T ss_pred ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECC-CCceeEEeeCC-ccCCCccceeEEEEEeCCC-eEEEEE
Confidence 78899988 44432222110 1122346789999999999 888766
Q ss_pred cc----CCeEEEEEccCCeeeccccccccccccccCcccceeccccce----EEEEEccCCCeEEEE-e--cC------c
Q 012721 287 SS----RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASI----SDIKFANDGQHLLSR-D--YM------N 349 (457)
Q Consensus 287 ~~----dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v----~~~~~s~~g~~l~s~-~--~~------~ 349 (457)
+. +..|.+||+.+++.. .+... .+...+ ..++|+|||+.|+.. + ++ .
T Consensus 273 ~~~~~~~~~i~~~d~~~g~~~----~~~~~------------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~ 336 (723)
T 1xfd_A 273 LNRAQNVSILTLCDATTGVCT----KKHED------------ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYH 336 (723)
T ss_dssp EETTSCEEEEEEEETTTCCEE----EEEEE------------ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEE
T ss_pred EcCCCCeEEEEEEeCCCCcce----EEEEe------------ccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeE
Confidence 43 357999999887543 22221 011222 378999999988753 3 25 4
Q ss_pred EEEEeccCCCCc--eeEeeeccccccccccccCCCCccccce-EEEcCCCcEEEEEeCC---CcEEEEecCCCCc-eeeE
Q 012721 350 LKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYS---NLLRIFSHGVGSA-GGIT 422 (457)
Q Consensus 350 i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~s~~~d---g~i~iw~~~~~~~-~~~~ 422 (457)
|++||+...+.. ...+..+...+ .. ++|+|||+.|+..+.+ +.++||++..... ....
T Consensus 337 l~~~d~~~~~~~~~~~~l~~~~~~~---------------~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 401 (723)
T 1xfd_A 337 ITVSSSQPNSSNDNIQSITSGDWDV---------------TKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQC 401 (723)
T ss_dssp EEEECSSCCSSSCCCCBSCCSSSCE---------------EEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBC
T ss_pred EEEEeccCCCCccceeEeecCCeEE---------------EeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcce
Confidence 666773222331 33443222211 23 6899999999876655 7899999875422 2333
Q ss_pred Eec---CCCcceeeeeccCCcceecc
Q 012721 423 VEA---GKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 423 ~~~---~~~~v~~~~~~p~~~~~~~~ 445 (457)
+.. |...+..++|+|++...+..
T Consensus 402 l~~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 402 LSCDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp SSTTSSSSCCCCEEEECTTSSEEEEE
T ss_pred ecccccCCCCeEEEEECCCCCEEEEE
Confidence 443 67778999999998766653
No 138
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.90 E-value=6.2e-21 Score=175.51 Aligned_cols=268 Identities=11% Similarity=0.120 Sum_probs=170.8
Q ss_pred ccCCceEEEEECCCCCEEEEEeC---CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDR---GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.+...+..++|+|||+ |++++. ++.|.+|++.++.. +.+..+..+.
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-------------------------~~~~~~~~~~----- 85 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-------------------------HKLNTVVAPG----- 85 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-------------------------EEEEEEEEES-----
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-------------------------EEeeeeecCC-----
Confidence 3567788899999999 554443 68999999976653 1333334444
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..+..++| ++++++|++++ .++.|.+|++. ++............
T Consensus 86 -------~~p~~~a~--spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------------------------- 131 (347)
T 3hfq_A 86 -------TPPAYVAV--DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG------------------------- 131 (347)
T ss_dssp -------CCCSEEEE--ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-------------------------
T ss_pred -------CCCEEEEE--CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-------------------------
Confidence 56888999 78999888887 78999999995 33333222111000
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
. .+. ...+...+.+++|+|+++++++. .++.|.+|++...+........ .
T Consensus 132 ---------------------~-~p~---~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~----~ 182 (347)
T 3hfq_A 132 ---------------------H-GPR---PEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVL----T 182 (347)
T ss_dssp ---------------------C-CSS---TTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEE----E
T ss_pred ---------------------C-CCC---ccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeE----E
Confidence 0 000 01234468899999999966666 7899999999843433222110 0
Q ss_pred cCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 264 DDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 264 ~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
......+..++|+|+| + +++++..++.|.+|++.. ++... ...+.. .+.. + .....+..++|+|+|+
T Consensus 183 ~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~--~~~~~~---~~~~---~-~~~~~~~~i~~spdG~ 252 (347)
T 3hfq_A 183 MEAGFGPRHLVFSPDG-QYAFLAGELSSQIASLKYDTQTGAFTQ--LGIVKT---IPAD---Y-TAHNGAAAIRLSHDGH 252 (347)
T ss_dssp CCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEEETTTTEEEE--EEEEES---SCTT---C-CSCCEEEEEEECTTSC
T ss_pred cCCCCCCceEEECCCC-CEEEEEeCCCCEEEEEEecCCCCceEE--eeeeee---cCCC---C-CCCCcceeEEECCCCC
Confidence 1122357789999999 7 455567889999999874 33210 011111 0000 0 0113588999999999
Q ss_pred eEEEE-e-cCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-CcEEEEe--c
Q 012721 341 HLLSR-D-YMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-NLLRIFS--H 413 (457)
Q Consensus 341 ~l~s~-~-~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-g~i~iw~--~ 413 (457)
+|+++ . ++.|.+|++...+ +.+..+..+.... ..++|+|||++|++++.+ +.|.+|+ .
T Consensus 253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFP---------------RDFDLDPTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCC---------------CEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCc---------------CeEEECCCCCEEEEEEcCCCcEEEEEEeC
Confidence 88644 4 4999999996322 2333333332221 589999999999888765 8999995 4
Q ss_pred CCC
Q 012721 414 GVG 416 (457)
Q Consensus 414 ~~~ 416 (457)
.++
T Consensus 318 ~tg 320 (347)
T 3hfq_A 318 TSG 320 (347)
T ss_dssp TTC
T ss_pred CCC
Confidence 556
No 139
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=5.3e-22 Score=201.60 Aligned_cols=288 Identities=10% Similarity=0.060 Sum_probs=193.1
Q ss_pred ceEEEEECCCCCEEEEEeCCCeEEEEEecCC---ccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGGRVILFETVGG---KNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
.|.+++|||||++|++++. +.|++||+.++ +. ..+..|.
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~----------------------------~~l~~~~--------- 151 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAV----------------------------RQLTHGE--------- 151 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSC----------------------------CBCCCSS---------
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceE----------------------------EEcccCC---------
Confidence 4889999999999999886 89999999877 32 2345555
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+..++| +|||++|++++. +.|++||+.+++...+....... +. .+
T Consensus 152 ---~~~~~~~~--SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~-~~------------------------~g-- 198 (741)
T 2ecf_A 152 ---GFATDAKL--SPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTT-IG------------------------NG-- 198 (741)
T ss_dssp ---SCEEEEEE--CTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSS-EE------------------------ES--
T ss_pred ---cccccccC--CCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccc-ee------------------------cc--
Confidence 67999999 899999998874 68999999887654432110000 00 00
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC------------------------------
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL------------------------------ 239 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~------------------------------ 239 (457)
. ..... ......+..++|+|||++|+++ .|+
T Consensus 199 ----------~-------~~~v~-~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 260 (741)
T 2ecf_A 199 ----------I-------AEFVA-DEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDAN 260 (741)
T ss_dssp ----------C-------CCHHH-HHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCC
T ss_pred ----------c-------cceee-eeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCC
Confidence 0 00000 0011235789999999999887 554
Q ss_pred ---eEEEEEcCCC-cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-----CCeEEEEEccCCeeeccccccc
Q 012721 240 ---RINLWNLEIS-DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQSALCDHSARIL 310 (457)
Q Consensus 240 ---~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~ 310 (457)
.|++||+. . ++...+. . ...|...+..++| |+| +.|++++. +..|.+||+.+++.. .++
T Consensus 261 ~~~~l~~~d~~-~~~~~~~~~-~----~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~~~g~~~----~~~ 328 (741)
T 2ecf_A 261 VQVKLGVISPA-EQAQTQWID-L----GKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTLASNQQR----VLA 328 (741)
T ss_dssp CEEEEEEECSS-TTCCCEEEC-C----CSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEETTTCCEE----EEE
T ss_pred CeeEEEEEECC-CCCceEEec-C----CCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEECCCCceE----EEE
Confidence 78889988 4 4443321 0 1247788999999 999 87776653 578999999987543 222
Q ss_pred cccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccce
Q 012721 311 RDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFE 389 (457)
Q Consensus 311 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 389 (457)
..+.. .....+..++|+|||+++++++. +.++||.++..++ ...+..+...+ ..
T Consensus 329 ~~~~~---------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v---------------~~ 383 (741)
T 2ecf_A 329 HETSP---------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSV---------------DE 383 (741)
T ss_dssp EEECS---------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCE---------------EE
T ss_pred EcCCC---------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEE---------------Ee
Confidence 22000 00013467899999998887765 8788887764345 66666554432 35
Q ss_pred E-EEcCCCcEEEE-EeCCC--cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721 390 C-SVSGDGLHFAT-GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 390 ~-~~s~d~~~l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
+ .|+||++.|+. ++.++ .++||++.........+.. ...+..+.|+|++...+...++
T Consensus 384 ~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~ 445 (741)
T 2ecf_A 384 LLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSN 445 (741)
T ss_dssp EEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEE
T ss_pred EeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecC
Confidence 5 59999987764 55555 8999998753344555555 6667899999999877664443
No 140
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=1.6e-20 Score=171.60 Aligned_cols=264 Identities=10% Similarity=0.055 Sum_probs=175.4
Q ss_pred EEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721 38 IEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (457)
Q Consensus 38 ~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (457)
..|.++++ .+++++.++.|.+||..+++. +..+..+. ..+
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~------------~~~ 43 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEI---------------------------LNQITLGY------------DFV 43 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEECCC------------CEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccce---------------------------eeeEEccC------------Ccc
Confidence 34566554 467788899999999987763 23333333 456
Q ss_pred EEEEEEecCCCCEEEEeeC-CCeEEEEEecccce-eEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 117 NRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKV-KKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 117 ~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.++| +++++++++++. ++.|.+||..+++. ....
T Consensus 44 -~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~----------------------------------------- 79 (331)
T 3u4y_A 44 -DTAI--TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAI----------------------------------------- 79 (331)
T ss_dssp -EEEE--CSSSCEEEEEESTTCEEEEEECSSSSCEEEEE-----------------------------------------
T ss_pred -eEEE--cCCCCEEEEEeCCCCeEEEEECCCCceeEEec-----------------------------------------
Confidence 8999 789987776655 89999999988765 2221
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC-C--eEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD-L--RINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d-~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
..+..+..+++|+|++++++++ .+ + .|.+||+. .++....+ . ....+
T Consensus 80 --------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~-~~~~~~~~-------~-~~~~~ 130 (331)
T 3u4y_A 80 --------------------QEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFL-KNKFISTI-------P-IPYDA 130 (331)
T ss_dssp --------------------EECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETT-TTEEEEEE-------E-CCTTE
T ss_pred --------------------ccCCCCccceEECCCCCEEEEecCCCCcccEEEEECC-CCCeEEEE-------E-CCCCc
Confidence 2233445559999999999976 44 3 99999998 55555443 2 22446
Q ss_pred EEEEEecCCccEEEEEccCCe-EEEEEccCCeeeccc-cccccccccccCcccceeccccceEEEEEccCCCeEEEEe--
Q 012721 271 TSAEFHPIYCNLLAYSSSRGF-VRLVDMRQSALCDHS-ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-- 346 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~-i~lwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-- 346 (457)
.+++|+|+|..++++...++. |.+|++......... ...+ ........++|+|+|++++.++
T Consensus 131 ~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~--------------~~~~~~~~~~~spdg~~l~v~~~~ 196 (331)
T 3u4y_A 131 VGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI--------------SGGTRPFNITFTPDGNFAFVANLI 196 (331)
T ss_dssp EEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE--------------CSSSSEEEEEECTTSSEEEEEETT
T ss_pred cceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc--------------cCCCCccceEECCCCCEEEEEeCC
Confidence 899999999335555556688 999998864321100 0111 1134578999999999776554
Q ss_pred cCcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCce-ee
Q 012721 347 YMNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAG-GI 421 (457)
Q Consensus 347 ~~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~-~~ 421 (457)
++.|++||+.. ++. +..+..+... ..++|+|||++|+.++ .++.|.+||+.+++.. ..
T Consensus 197 ~~~v~v~d~~~-~~~~~~~~~~~~~~~~----------------~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~ 259 (331)
T 3u4y_A 197 GNSIGILETQN-PENITLLNAVGTNNLP----------------GTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK 259 (331)
T ss_dssp TTEEEEEECSS-TTSCEEEEEEECSSCC----------------CCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE
T ss_pred CCeEEEEECCC-CcccceeeeccCCCCC----------------ceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec
Confidence 38999999975 666 5555544332 5799999999776655 4788999999988321 22
Q ss_pred EEecC----CCcc---eeeeeccCCcceec
Q 012721 422 TVEAG----KNEN---RKPILQAAPRARRS 444 (457)
Q Consensus 422 ~~~~~----~~~v---~~~~~~p~~~~~~~ 444 (457)
.+..+ ..+. ..++|+|++.....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 260 SFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ccccccccCCCCcccccceEECCCCCEEEE
Confidence 22222 2222 45899999986543
No 141
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=5.2e-21 Score=171.44 Aligned_cols=234 Identities=13% Similarity=0.142 Sum_probs=165.2
Q ss_pred ccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecC-CccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVG-GKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
...|...|.+++|+|+|++|++++ ++.|++||+.+ ++. ...+.++.
T Consensus 37 ~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~---------------------------~~~~~~~~----- 83 (297)
T 2ojh_A 37 VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP---------------------------EKVDTGFA----- 83 (297)
T ss_dssp EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC---------------------------EECCCTTC-----
T ss_pred eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc---------------------------eEeccccc-----
Confidence 455889999999999999999987 77999999987 653 12233332
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
...|.+++| ++++++|++++ .++...+|.+. ++....
T Consensus 84 ------~~~~~~~~~--spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~------------------------------- 124 (297)
T 2ojh_A 84 ------TICNNDHGI--SPDGALYAISDKVEFGKSAIYLLPSTGGTPRL------------------------------- 124 (297)
T ss_dssp ------CCBCSCCEE--CTTSSEEEEEECTTTSSCEEEEEETTCCCCEE-------------------------------
T ss_pred ------cccccceEE--CCCCCEEEEEEeCCCCcceEEEEECCCCceEE-------------------------------
Confidence 156888999 78999999988 44566666654 332111
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
..+...+..++|+|+++.|+ ++ .++.+++|+++........
T Consensus 125 --------------------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~----- 167 (297)
T 2ojh_A 125 --------------------------------MTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETR----- 167 (297)
T ss_dssp --------------------------------CCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEE-----
T ss_pred --------------------------------eecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceE-----
Confidence 11222488899999999887 56 8999999997533322222
Q ss_pred CcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721 261 SNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 261 ~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
+..+...+.+++|+|++ +.|++++ .++.+++|++.. +... .. +..|...+..++|+|+
T Consensus 168 --~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~~~----~~-------------~~~~~~~~~~~~~s~d 227 (297)
T 2ojh_A 168 --LTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGSSV----ER-------------ITDSAYGDWFPHPSPS 227 (297)
T ss_dssp --CCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSCE----EE-------------CCCCSEEEEEEEECTT
T ss_pred --cccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCCCc----EE-------------EecCCcccCCeEECCC
Confidence 45577889999999999 7666555 689999998863 2111 11 1234467889999999
Q ss_pred CCeEEEEec------------CcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 339 GQHLLSRDY------------MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 339 g~~l~s~~~------------~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
|++|++++. +.|++||+.. ++. +..+..|...+ ..++|+||+++|++++.
T Consensus 228 g~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~~~~~~~~~~~~~~---------------~~~~~spdg~~l~~~~~ 291 (297)
T 2ojh_A 228 GDKVVFVSYDADVFDHPRDLDVRVQLMDMDG-GNVETLFDLFGGQGTM---------------NSPNWSPDGDEFAYVRY 291 (297)
T ss_dssp SSEEEEEEEETTCCSCCSSEEEEEEEEETTS-CSCEEEEEEEESTTTS---------------CSCCBCTTSSEEEEEEE
T ss_pred CCEEEEEEcCCCCCcccccCceEEEEEecCC-CCceeeeccCCCCccc---------------ccceECCCCCEEEEEEe
Confidence 999987642 4599999975 444 33333555443 57999999999998876
Q ss_pred CC
Q 012721 405 SN 406 (457)
Q Consensus 405 dg 406 (457)
|.
T Consensus 292 ~~ 293 (297)
T 2ojh_A 292 FP 293 (297)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=4.3e-21 Score=193.79 Aligned_cols=284 Identities=8% Similarity=0.054 Sum_probs=190.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
..|.+++|||| +.++.+. ++.|++||+.+++. ..+..+.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~----------------------------~~l~~~~----------- 120 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKV----------------------------TYLFDTN----------- 120 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEE----------------------------EEEECCT-----------
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCce----------------------------EEccCCc-----------
Confidence 57999999999 6665554 58999999987653 1233344
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecc-----cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRD-----QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..+.+++| +|+|+.|+++ .|+.|++|++.+ ++...+....... +
T Consensus 121 -~~~~~~~~--SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~-~-------------------------- 169 (706)
T 2z3z_A 121 -EETASLDF--SPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTET-L-------------------------- 169 (706)
T ss_dssp -TCCTTCEE--CTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTT-E--------------------------
T ss_pred -ccccCCcC--CCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCC-e--------------------------
Confidence 56788999 7999999885 689999999988 6544322111000 0
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-----------------------------
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D----------------------------- 237 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~----------------------------- 237 (457)
.+- .. .. ..+...+.+++|+|||++|+++ .
T Consensus 170 ----------~~g-------~~--~~-~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g 229 (706)
T 2z3z_A 170 ----------VYG-------QA--VH-QREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAG 229 (706)
T ss_dssp ----------EES-------SC--CG-GGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTT
T ss_pred ----------Ecc-------cc--hh-hhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCC
Confidence 000 00 00 2233457889999999999886 3
Q ss_pred ----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-----eEEEEEccCCeeeccccc
Q 012721 238 ----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 238 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~~~ 308 (457)
+..|++||+. .+....+. ....|...+.+++|+|+| +.|++++.++ .|.+||+.+++... .
T Consensus 230 ~~~~~~~l~~~d~~-~~~~~~~~-----~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~~~d~~~g~~~~---~ 299 (706)
T 2z3z_A 230 TPSHHVTVGIYHLA-TGKTVYLQ-----TGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVNAYDAETGRFVR---T 299 (706)
T ss_dssp SCCCEEEEEEEETT-TTEEEECC-----CCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEEEEETTTCCEEE---E
T ss_pred CCCCeeEEEEEECC-CCceEeec-----cCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEEEEECCCCceee---E
Confidence 2579999998 45443321 112467789999999999 8888887765 89999999873221 1
Q ss_pred cccccccccCcccceeccccceEEEEEcc--CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCcc
Q 012721 309 ILRDAAESHGSKSFFTEIIASISDIKFAN--DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIF 385 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~--~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (457)
+... .. . .....+..++|+| +|+++++++. +.+++|+++..+..+..+..+...+
T Consensus 300 ~~~~-~~-~-------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v------------- 357 (706)
T 2z3z_A 300 LFVE-TD-K-------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEV------------- 357 (706)
T ss_dssp EEEE-EC-S-------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCE-------------
T ss_pred EEEc-cC-C-------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEE-------------
Confidence 1111 00 0 0011246789999 9999888764 8899998874466666666554432
Q ss_pred ccce-EEEcCCCcEEEEEeC-CC----cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceecc
Q 012721 386 DKFE-CSVSGDGLHFATGSY-SN----LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSS 445 (457)
Q Consensus 386 ~v~~-~~~s~d~~~l~s~~~-dg----~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~ 445 (457)
.. ++|+||++.|+.++. ++ .|+.||+.+++ ...+ .+...+..++|+|++...+.+
T Consensus 358 --~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~--~~~l-~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 358 --TNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK--TKDL-TPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp --EEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC--CEES-CCSSSEEEEEECTTSSEEEEE
T ss_pred --EeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC--ceec-cCCCceEEEEECCCCCEEEEE
Confidence 34 799999998876554 44 67777777763 2333 367778999999999876654
No 143
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.5e-19 Score=170.63 Aligned_cols=178 Identities=11% Similarity=0.140 Sum_probs=127.4
Q ss_pred cccCCceEEEEECCCCCEEE----EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLA----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~la----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
+.|...|++++|+|+|++|| +|+.|+.|+|||+.+...... ........+..+.+|.
T Consensus 89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~----------------~~~~~~~~~~~~~~h~--- 149 (434)
T 2oit_A 89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK----------------QQKRPFAYHKLLKDAG--- 149 (434)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC----------------SSCCCSEEEECCCSGG---
T ss_pred ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCc----------------CCcceeeeeeccCCCC---
Confidence 44667899999999999999 788999999999876410000 0000111245566777
Q ss_pred cccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..|.+++| +|+ +.+|++++.||+|++||+.++......
T Consensus 150 ---------~~V~~v~~--~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~------------------------------ 188 (434)
T 2oit_A 150 ---------GMVIDMKW--NPTVPSMVAVCLADGSIAVLQVTETVKVCAT------------------------------ 188 (434)
T ss_dssp ---------GSEEEEEE--CSSCTTEEEEEETTSCEEEEEESSSEEEEEE------------------------------
T ss_pred ---------CceEEEEE--CCCCCCEEEEEECCCeEEEEEcCCCcceeec------------------------------
Confidence 88999999 565 789999999999999999887432110
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
.+|...|.+++|+|+|++|++| .|+.|++||++ . .....+......
T Consensus 189 -------------------------------~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~-~~~~~~~~~~~~ 235 (434)
T 2oit_A 189 -------------------------------LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L-QEKKVIPCPPFY 235 (434)
T ss_dssp -------------------------------ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C-CEEEEECCCTTC
T ss_pred -------------------------------cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C-cccccccCCccc
Confidence 3577899999999999999999 99999999998 3 333332211111
Q ss_pred ccCCCCceEEEEEecCCccEEEE-EccCC------eEEEEEccCC
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAY-SSSRG------FVRLVDMRQS 300 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~-~~~dg------~i~lwd~~~~ 300 (457)
...|...+.+++|++++ .++++ +..+| .+++||+++.
T Consensus 236 ~~~~~~~v~~v~w~~~~-~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 236 ESDHPVRVLDVLWIGTY-VFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CTTSCEEEEEEEEEETT-EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCCceeEEEEEEecCc-eEEEEEccCCCccCCCCceEEEEeccC
Confidence 11345589999999987 66544 33443 3899999865
No 144
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.87 E-value=1.1e-20 Score=186.26 Aligned_cols=256 Identities=14% Similarity=0.060 Sum_probs=175.4
Q ss_pred cCCceEEEEECCCCCEEEEEeC-CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDR-GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
+..+|++++|+|||++||+++. ||+++||++++++. ..+..|..
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~----------------------------~~lt~~~~------- 64 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET----------------------------VKLNREPI------- 64 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE----------------------------EECCSSCC-------
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc----------------------------Eeeecccc-------
Confidence 3568999999999999999876 99999999876553 22333320
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..+..+.| +|+ +++++++. +...++|.+.. ......+
T Consensus 65 ----~~~~~~~~--spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l------------------------------- 106 (582)
T 3o4h_A 65 ----NSVLDPHY--GVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL------------------------------- 106 (582)
T ss_dssp ----SEECEECT--TCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC-------------------------------
T ss_pred ----cccccccC--CCC-eEEEEeccCCCCcceEEEEEeccCCCccccc-------------------------------
Confidence 46889999 677 67776664 45567766543 2111100
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCC--EEEEeCCCeEEEEEcCCCcceeeeeecCCCc
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
. ....+...+|+|+++ .++++.++.+.+||+. .++...+.
T Consensus 107 ------------------------------~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~-~g~~~~l~------ 148 (582)
T 3o4h_A 107 ------------------------------E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALD-GGGLRELA------ 148 (582)
T ss_dssp ------------------------------T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEE-TTEEEEEE------
T ss_pred ------------------------------c-CCCCceeeeeCCCCCeEEEEecCCCCceEEEcc-CCcEEEee------
Confidence 0 111233556777765 4444555555599998 55544432
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccC----CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSR----GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND 338 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~ 338 (457)
.+.. .+++|+||| ++|++++.+ +.|++||+.+++.. . +..|...+..++||||
T Consensus 149 --~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~~~-----~-------------l~~~~~~~~~~~~SpD 205 (582)
T 3o4h_A 149 --RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGGLR-----V-------------FDSGEGSFSSASISPG 205 (582)
T ss_dssp --EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCCCE-----E-------------ECCSSCEEEEEEECTT
T ss_pred --cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCCce-----E-------------eecCCCccccceECCC
Confidence 1222 789999999 999988776 78999999887532 1 2334567899999999
Q ss_pred CCeEEEEec-C--cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE--------EcCCCcEEEEEeCCCc
Q 012721 339 GQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS--------VSGDGLHFATGSYSNL 407 (457)
Q Consensus 339 g~~l~s~~~-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~s~d~~~l~s~~~dg~ 407 (457)
|++|++++. + .|++||+.. ++.. .+..+...+ ..++ |+|||.++++++.|++
T Consensus 206 G~~l~~~~~~~~~~i~~~d~~~-~~~~-~~~~~~~~~---------------~~~~~~~~~~~~~spdg~~~~~~~~~g~ 268 (582)
T 3o4h_A 206 MKVTAGLETAREARLVTVDPRD-GSVE-DLELPSKDF---------------SSYRPTAITWLGYLPDGRLAVVARREGR 268 (582)
T ss_dssp SCEEEEEECSSCEEEEEECTTT-CCEE-ECCCSCSHH---------------HHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred CCEEEEccCCCeeEEEEEcCCC-CcEE-EccCCCcCh---------------hhhhhccccceeEcCCCcEEEEEEcCCc
Confidence 999996654 6 899999975 5555 555555433 2445 9999999999999999
Q ss_pred EEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 408 LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 408 i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+++|++ + +... ...+.+..++|+ ++....+
T Consensus 269 ~~l~~~--g-~~~~---~~~~~v~~~~~s-dg~~l~~ 298 (582)
T 3o4h_A 269 SAVFID--G-ERVE---APQGNHGRVVLW-RGKLVTS 298 (582)
T ss_dssp EEEEET--T-EEEC---CCSSEEEEEEEE-TTEEEEE
T ss_pred EEEEEE--C-Ceec---cCCCceEEEEec-CCEEEEE
Confidence 999999 5 3332 344678889999 7765543
No 145
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=1.8e-20 Score=177.00 Aligned_cols=229 Identities=10% Similarity=-0.017 Sum_probs=152.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...++.+++++++.++++|+.++ ++||+......... .+ .....+... .....+.
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~----------~~-------~~~~~~~~~-------~~~~~~~ 90 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNK----------PG-------DDPNKIVDK-------VQGLLVP 90 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCC----------TT-------CCTTCEEEC-------CCCEEEC
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcc----------cc-------cCccccccc-------Ccccccc
Confidence 45689999999999999999887 99998653221000 00 000000000 0011223
Q ss_pred ccCcEEEEEEEecCCCCEEE----EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 112 IEEKINRVRWCAAPNGSMFI----LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~----s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
+...|.+++| ++++++|+ +++.|+.|++||+.++..... ....
T Consensus 91 ~~~~v~~l~~--spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~---~~~~---------------------------- 137 (434)
T 2oit_A 91 MKFPIHHLAL--SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAK---QQKR---------------------------- 137 (434)
T ss_dssp CSSCEEEEEE--CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTC---SSCC----------------------------
T ss_pred CCCcccEEEE--cCCCCEEEEEEeccCCCceEEEEEccccccCCc---CCcc----------------------------
Confidence 3478999999 78999999 788999999999876510000 0000
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
....+.. +.+|...|.+++|+|+ +.+|+++ .|+.|++||++. +..... ..+
T Consensus 138 ------------------~~~~~~~-~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~-~~~~~~-------~~~ 190 (434)
T 2oit_A 138 ------------------PFAYHKL-LKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTE-TVKVCA-------TLP 190 (434)
T ss_dssp ------------------CSEEEEC-CCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESS-SEEEEE-------EEC
T ss_pred ------------------eeeeeec-cCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCC-Ccceee-------ccC
Confidence 0000111 2678999999999997 7899998 999999999984 333321 345
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
|...|.+++|+|+| ++|++|+.||.|++||++ ++.. ..+..+. ..-..|...|.+++|++++.++++.
T Consensus 191 ~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~~~----~~~~~~~------~~~~~~~~~v~~v~w~~~~~~l~~~ 258 (434)
T 2oit_A 191 STVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQEK----KVIPCPP------FYESDHPVRVLDVLWIGTYVFAIVY 258 (434)
T ss_dssp GGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CCEE----EEECCCT------TCCTTSCEEEEEEEEEETTEEEEEE
T ss_pred CCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cccc----ccccCCc------ccCCCCceeEEEEEEecCceEEEEE
Confidence 88899999999999 999999999999999998 3221 1121100 0001244579999999999888754
Q ss_pred e--cC------cEEEEeccC
Q 012721 346 D--YM------NLKLWDIRM 357 (457)
Q Consensus 346 ~--~~------~i~~wd~~~ 357 (457)
+ +| .+++|+++.
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~ 278 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPK 278 (434)
T ss_dssp EETTCCSSSCCEEEEEECCC
T ss_pred ccCCCccCCCCceEEEEecc
Confidence 3 22 389999975
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.1e-20 Score=190.73 Aligned_cols=236 Identities=8% Similarity=0.007 Sum_probs=162.7
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..|.+++| +++ ..++.+ .++.|++||+.+++....
T Consensus 82 ~~v~~~~~--spd-~~~~~~-~~~~i~~~d~~~~~~~~l----------------------------------------- 116 (706)
T 2z3z_A 82 FPSFRTLD--AGR-GLVVLF-TQGGLVGFDMLARKVTYL----------------------------------------- 116 (706)
T ss_dssp CCCEEEEE--TTT-TEEEEE-ETTEEEEEETTTTEEEEE-----------------------------------------
T ss_pred cCceeEEE--CCC-CeEEEE-ECCEEEEEECCCCceEEc-----------------------------------------
Confidence 46899999 788 566555 459999999988765433
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC----cceeeeeecCCCc-------
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEIS----DQCFNIVDMKPSN------- 262 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~~~~~~~~~~------- 262 (457)
..+...+.+++|+|||+.|+++.|+.|++||+... ++...+.......
T Consensus 117 ---------------------~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 117 ---------------------FDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp ---------------------ECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred ---------------------cCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 23445678899999999999998899999999831 4444331100000
Q ss_pred ccCCCCceEEEEEecCCccEEEEEc---------------------------------cCCeEEEEEccCCeeecccccc
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSS---------------------------------SRGFVRLVDMRQSALCDHSARI 309 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~---------------------------------~dg~i~lwd~~~~~~~~~~~~~ 309 (457)
.+.+...+.+++|+||| ++|++++ .+..|.+||+.+++.. .+
T Consensus 176 ~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~----~~ 250 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTV----YL 250 (706)
T ss_dssp GGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEE----EC
T ss_pred hhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceE----ee
Confidence 00011225789999999 8888887 4467999999887532 11
Q ss_pred ccccccccCcccceeccccceEEEEEccCCCeEEEEe-cC-----cEEEEeccCCCCceeEeeec-c-ccccccccccCC
Q 012721 310 LRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YM-----NLKLWDIRMDSTPVATFKIH-E-HLRPKLCDLYNN 381 (457)
Q Consensus 310 ~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~-----~i~~wd~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 381 (457)
... ..|...+.+++|+|||++|++++ ++ .|++||+.+ ++....+... . ..+.
T Consensus 251 ~~~-----------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~-g~~~~~~~~~~~~~~~~-------- 310 (706)
T 2z3z_A 251 QTG-----------EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET-GRFVRTLFVETDKHYVE-------- 310 (706)
T ss_dssp CCC-----------SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT-CCEEEEEEEEECSSCCC--------
T ss_pred ccC-----------CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC-CceeeEEEEccCCCeEC--------
Confidence 111 12456799999999999988754 33 899999975 5333333221 1 1110
Q ss_pred CCccccceEEEcC--CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee-eeeccCCcceec
Q 012721 382 DSIFDKFECSVSG--DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK-PILQAAPRARRS 444 (457)
Q Consensus 382 ~~~~~v~~~~~s~--d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~~~ 444 (457)
.+..++|+| ||++|++++.|+.++||.+.........+..+...+.. ++|+|++.....
T Consensus 311 ----~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~ 372 (706)
T 2z3z_A 311 ----PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYF 372 (706)
T ss_dssp ----CCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEE
T ss_pred ----ccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEE
Confidence 014689999 99999999999999999887322566677778888876 799999976654
No 147
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.87 E-value=1.3e-19 Score=165.61 Aligned_cols=250 Identities=11% Similarity=0.060 Sum_probs=172.6
Q ss_pred CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cCCccccccccccccC-cEEEEEEE
Q 012721 45 DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLKSLEIEE-KINRVRWC 122 (457)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~-~V~~v~~~ 122 (457)
++|++++.++.|.+||..+++. +..+. ++. . .+..++|
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~------------~~~~~~~~~- 41 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAV---------------------------DKVITIADA------------GPTPMVPMV- 41 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEE---------------------------EEEEECTTC------------TTCCCCEEE-
T ss_pred cEEEEcCCCCeEEEEECCCCcE---------------------------EEEEEcCCC------------CCCccceEE-
Confidence 5789999999999999987653 22232 121 1 3778999
Q ss_pred ecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEec
Q 012721 123 AAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANV 201 (457)
Q Consensus 123 ~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 201 (457)
+++++.++ ++..++.|.+||+.+++....+.....
T Consensus 42 -s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~------------------------------------------- 77 (337)
T 1pby_B 42 -APGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP------------------------------------------- 77 (337)
T ss_dssp -CTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT-------------------------------------------
T ss_pred -cCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc-------------------------------------------
Confidence 78887654 556688999999988876544321100
Q ss_pred cCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-------------CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 202 GNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 202 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
..|...+..++|+|++++++++ .++.|.+||+. .++....+. ...
T Consensus 78 -------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~-~~~~~~~~~--------~~~ 135 (337)
T 1pby_B 78 -------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE-TLSRRKAFE--------APR 135 (337)
T ss_dssp -------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETT-TTEEEEEEE--------CCS
T ss_pred -------------ccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECC-CCcEEEEEe--------CCC
Confidence 0122356689999999988877 36999999998 555554432 124
Q ss_pred ceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc------cccCc-----------------------
Q 012721 269 VITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA------ESHGS----------------------- 319 (457)
Q Consensus 269 ~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~------~~~~~----------------------- 319 (457)
.+.+++|+|++ ++|+++ ++.|.+||+.+++.... +.... ..+..
T Consensus 136 ~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~----~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~ 208 (337)
T 1pby_B 136 QITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVED----KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKD 208 (337)
T ss_dssp SCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEE----ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTT
T ss_pred CcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeee----eeccccCCCceeCCCccEEeeeccCCCceeeeeeccccc
Confidence 46788999999 777776 68899999998765411 10000 00000
Q ss_pred ------------------------ccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccc
Q 012721 320 ------------------------KSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (457)
Q Consensus 320 ------------------------~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 375 (457)
...+..+...+.+++|+|+|++++++ ++.|++||+.. ++.+..+..+...
T Consensus 209 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~~~~~~---- 282 (337)
T 1pby_B 209 IDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEK-NASIKRVPLPHSY---- 282 (337)
T ss_dssp SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTT-TEEEEEEECSSCC----
T ss_pred cccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCC-CcCcceecCCCce----
Confidence 00122333456789999999999988 69999999975 6666666544332
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
.+++|+||+++|++++.++.|++||+.++ +....+..+
T Consensus 283 ------------~~~~~s~dg~~l~~~~~~~~i~v~d~~~~-~~~~~~~~~ 320 (337)
T 1pby_B 283 ------------YSVNVSTDGSTVWLGGALGDLAAYDAETL-EKKGQVDLP 320 (337)
T ss_dssp ------------CEEEECTTSCEEEEESBSSEEEEEETTTC-CEEEEEECG
T ss_pred ------------eeEEECCCCCEEEEEcCCCcEEEEECcCC-cEEEEEEcC
Confidence 58999999999999999999999999998 555555544
No 148
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.87 E-value=6.1e-19 Score=163.11 Aligned_cols=289 Identities=11% Similarity=0.046 Sum_probs=174.6
Q ss_pred cCCceEEEEECCCCCEEEEEeCC----CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRG----GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
+...+..++|+|||++|++++.+ +.|.+|+++...- ..+.+.....+.
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------------~~~~~~~~~~~~----- 99 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG-----------------------TLHLLNTQKTMG----- 99 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT-----------------------EEEEEEEEECSS-----
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC-----------------------cEEEeeEeccCC-----
Confidence 56778889999999999998875 7999999876311 111233333333
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
.....+++ +++++++++ .++.|.+|++...........
T Consensus 100 -------~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~------------------------------ 138 (361)
T 3scy_A 100 -------ADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASD------------------------------ 138 (361)
T ss_dssp -------SCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE------------------------------
T ss_pred -------CCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccce------------------------------
Confidence 34566665 667777765 688999999875422110000
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcc----e-eeee-e
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQ----C-FNIV-D 257 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~----~-~~~~-~ 257 (457)
........ ... ...+...+.+++|+|+|++++++ .++.|.+|++..... . +... .
T Consensus 139 ------------~~~~~g~~-~~~----~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 139 ------------VIEFKGSG-PDK----ERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ------------EEECCCCC-SCT----TTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ------------eEEccCCC-CCc----cccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 00000000 000 01234457899999999976654 689999999874331 1 1100 0
Q ss_pred cCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEc
Q 012721 258 MKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 258 ~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
.. .....+...+..++|+|+| +++++++ .++.|.+||+.+++... ...+.. ...+......++|+
T Consensus 202 ~~-~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~----------~~~~~~~~~~i~~s 267 (361)
T 3scy_A 202 PE-AFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGMLDE--IQTVAA----------DTVNAQGSGDIHLS 267 (361)
T ss_dssp EE-EEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEEEE--EEEEES----------CSSCCCCEEEEEEC
T ss_pred cc-ceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCceEE--eEEEec----------CCCCCCCcccEEEC
Confidence 00 0012234557899999999 7666655 78999999998764321 011111 11122456899999
Q ss_pred cCCCeEEEEe---cCcEEEEeccCC-CC--ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEE
Q 012721 337 NDGQHLLSRD---YMNLKLWDIRMD-ST--PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLR 409 (457)
Q Consensus 337 ~~g~~l~s~~---~~~i~~wd~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~ 409 (457)
|||++|+++. ++.|.+|++... ++ .+..+.. .... ..++|+|||++|++++ .++.|.
T Consensus 268 pdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~---------------~~~~~spdg~~l~~~~~~~~~v~ 331 (361)
T 3scy_A 268 PDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP---------------RNFIITPNGKYLLVACRDTNVIQ 331 (361)
T ss_dssp TTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC---------------CEEEECTTSCEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC---------------ceEEECCCCCEEEEEECCCCCEE
Confidence 9999987643 378999999631 33 2223332 1111 5899999999998888 578999
Q ss_pred EEecC--CCCceeeEE-ecCCCcceeeeec
Q 012721 410 IFSHG--VGSAGGITV-EAGKNENRKPILQ 436 (457)
Q Consensus 410 iw~~~--~~~~~~~~~-~~~~~~v~~~~~~ 436 (457)
+|+++ ++ +...+. ..+...+.++.|.
T Consensus 332 v~~~d~~~g-~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 332 IFERDQATG-LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp EEEECTTTC-CEEECSCCEECSSEEEEEEE
T ss_pred EEEEECCCC-cEeecceeeeCCCCeEEEEc
Confidence 96554 56 222222 2344567777775
No 149
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.87 E-value=5.7e-20 Score=169.02 Aligned_cols=261 Identities=9% Similarity=0.054 Sum_probs=173.9
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721 37 AIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (457)
Q Consensus 37 ~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (457)
.+++++++.++++++.++.|.+||+.+++. +..+..+.. ..+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~-----------~~~ 45 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTV---------------------------YKSCVMPDK-----------FGP 45 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEE---------------------------EEEEECSSC-----------CSS
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcE---------------------------EEEEecCCC-----------CCC
Confidence 456888999999999999999999987653 223332210 246
Q ss_pred EEEEEEecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccc
Q 012721 117 NRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMA 195 (457)
Q Consensus 117 ~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (457)
..++| ++++++++ +...++.|.+||+.+++...........
T Consensus 46 ~~~~~--s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~------------------------------------ 87 (349)
T 1jmx_B 46 GTAMM--APDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVP------------------------------------ 87 (349)
T ss_dssp CEEEE--CTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCST------------------------------------
T ss_pred ceeEE--CCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccc------------------------------------
Confidence 78899 78888655 4557899999999888765443211000
Q ss_pred eEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC------------CeEEEEEcCCCcceeeeeecCCCc
Q 012721 196 TKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------------LRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 196 i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------------~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
......+..++|+|+|++++++ .+ +.|.+||+. .++....+.
T Consensus 88 -------------------~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~-~~~~~~~~~----- 142 (349)
T 1jmx_B 88 -------------------GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA-DGLEAKPVR----- 142 (349)
T ss_dssp -------------------TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG-GGGGBCCSE-----
T ss_pred -------------------ccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC-Cccccceee-----
Confidence 0002246789999999999988 54 999999998 332222110
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccc-ccc--------------Cc--------
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAA-ESH--------------GS-------- 319 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~-~~~--------------~~-------- 319 (457)
...+...+.+++|+|+| + +++++. .|.+||+.+++... .+.... ..+ ..
T Consensus 143 ~~~~~~~~~~~~~s~dg-~-l~~~~~--~i~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (349)
T 1jmx_B 143 TFPMPRQVYLMRAADDG-S-LYVAGP--DIYKMDVKTGKYTV----ALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 214 (349)
T ss_dssp EEECCSSCCCEEECTTS-C-EEEESS--SEEEECTTTCCEEE----EECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEE
T ss_pred eccCCCcccceeECCCC-c-EEEccC--cEEEEeCCCCceec----cccccccCCccccCccceeeecCCCcceeEEeee
Confidence 11123457889999999 7 444443 49999998876432 111100 000 00
Q ss_pred --------------------------------ccceeccccceEEEEEcc-CCCeEEEEecCcEEEEeccCCCCceeEee
Q 012721 320 --------------------------------KSFFTEIIASISDIKFAN-DGQHLLSRDYMNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 320 --------------------------------~~~~~~h~~~v~~~~~s~-~g~~l~s~~~~~i~~wd~~~~~~~~~~~~ 366 (457)
...+..+...+..++|+| +|++++++ ++.|.+||+.+ ++.+..+.
T Consensus 215 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~-~~~~~~~~ 292 (349)
T 1jmx_B 215 TIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAAN 292 (349)
T ss_dssp EEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTT-TEEEEEEE
T ss_pred eeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECcc-CeEEEEEc
Confidence 000011223567889999 99999988 89999999975 66666665
Q ss_pred eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
..... ..++|+||+++|++++.++.|++||+.++ +....+..
T Consensus 293 ~~~~~----------------~~~~~s~dg~~l~~~~~~~~v~v~d~~~~-~~~~~~~~ 334 (349)
T 1jmx_B 293 LDHTY----------------YCVAFDKKGDKLYLGGTFNDLAVFNPDTL-EKVKNIKL 334 (349)
T ss_dssp CSSCC----------------CEEEECSSSSCEEEESBSSEEEEEETTTT-EEEEEEEC
T ss_pred CCCCc----------------cceEECCCCCEEEEecCCCeEEEEecccc-ceeeeeec
Confidence 43322 58999999999988888999999999988 45555543
No 150
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.86 E-value=6.9e-20 Score=192.49 Aligned_cols=277 Identities=10% Similarity=0.065 Sum_probs=191.8
Q ss_pred cccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLK 108 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 108 (457)
..|...+.++.|+++ .++++++.++.+.||.++.... ....+..|.
T Consensus 200 ~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~--------------------------~~~~l~~~~------- 245 (1045)
T 1k32_A 200 VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGK--------------------------DLRKHTSFT------- 245 (1045)
T ss_dssp ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSC--------------------------SCEECCCCC-------
T ss_pred cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCC--------------------------cceEecCCC-------
Confidence 358889999999988 6777888899999998764221 112333343
Q ss_pred cccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeec----------CCCceeeeeeccccccccccCC
Q 012721 109 SLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMD----------HFPFVSSENTLLAEKNFMNEHN 178 (457)
Q Consensus 109 ~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 178 (457)
.+..++| +++|+.|+++ .++.|.+|++...... .+... ....+.+++|++++|..+..
T Consensus 246 ------~~~~~~~--SpDG~~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~-- 313 (1045)
T 1k32_A 246 ------DYYPRHL--NTDGRRILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF-- 313 (1045)
T ss_dssp ------SSCEEEE--EESSSCEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE--
T ss_pred ------CcceeeE--cCCCCEEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE--
Confidence 2456688 6789888887 4899999998544333 21110 01124445554122221111
Q ss_pred CCCceeccCCccccccceEEEeccCccccccceeeccCCCC-CeeEEEeCCCCCEEEEe-CCCeEE-EEEcCCCcceeee
Q 012721 179 PPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDF-NINSISNNSDCETFVSA-DDLRIN-LWNLEISDQCFNI 255 (457)
Q Consensus 179 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~~~-~d~~i~-iwd~~~~~~~~~~ 255 (457)
...+.+.+|+..... . ..+ ..|.. .+..++|+ +|+.|+++ .+..+. +||+. .+....
T Consensus 314 ------------~~~~~i~~~~~~~~~---~-~~~-~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~-~~~~~~- 373 (1045)
T 1k32_A 314 ------------VSRGQAFIQDVSGTY---V-LKV-PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYR-TGKAEK- 373 (1045)
T ss_dssp ------------EETTEEEEECTTSSB---E-EEC-SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETT-TCCEEE-
T ss_pred ------------EEcCEEEEEcCCCCc---e-EEc-cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECC-CCCceE-
Confidence 124467778775432 1 112 45666 89999999 99999998 888888 99987 444332
Q ss_pred eecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE
Q 012721 256 VDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF 335 (457)
Q Consensus 256 ~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 335 (457)
+.+|...+..++|+|+| ++|++++.++.|++||+.+++.. .+. .+|...+.+++|
T Consensus 374 -------l~~~~~~~~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~~~----~~~-------------~~~~~~v~~~~~ 428 (1045)
T 1k32_A 374 -------FEENLGNVFAMGVDRNG-KFAVVANDRFEIMTVDLETGKPT----VIE-------------RSREAMITDFTI 428 (1045)
T ss_dssp -------CCCCCCSEEEEEECTTS-SEEEEEETTSEEEEEETTTCCEE----EEE-------------ECSSSCCCCEEE
T ss_pred -------ecCCccceeeeEECCCC-CEEEEECCCCeEEEEECCCCceE----Eec-------------cCCCCCccceEE
Confidence 33677889999999999 99999999999999999887543 222 235567899999
Q ss_pred ccCCCeEEEEec-C----------cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC
Q 012721 336 ANDGQHLLSRDY-M----------NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY 404 (457)
Q Consensus 336 s~~g~~l~s~~~-~----------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~ 404 (457)
+|||++|++++. + .|++||+.. ++ ...+..|.... ..++|+|||++|++++.
T Consensus 429 SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~-g~-~~~l~~~~~~~---------------~~~~~spdG~~l~~~s~ 491 (1045)
T 1k32_A 429 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG-RK-IFAATTENSHD---------------YAPAFDADSKNLYYLSY 491 (1045)
T ss_dssp CTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT-TE-EEECSCSSSBE---------------EEEEECTTSCEEEEEES
T ss_pred CCCCCeEEEEecCccccccCCCCCeEEEEECCC-Cc-EEEeeCCCccc---------------CCceEcCCCCEEEEEec
Confidence 999999987643 3 899999975 44 55555554432 57899999999999998
Q ss_pred CCcEEEEec
Q 012721 405 SNLLRIFSH 413 (457)
Q Consensus 405 dg~i~iw~~ 413 (457)
++...+|+.
T Consensus 492 ~~~~~~~~~ 500 (1045)
T 1k32_A 492 RSLDPSPDR 500 (1045)
T ss_dssp CCCCCEECS
T ss_pred ccCCcCcch
Confidence 877777764
No 151
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.85 E-value=2e-18 Score=158.19 Aligned_cols=258 Identities=12% Similarity=0.156 Sum_probs=160.1
Q ss_pred cccCCceEEEEECCCCCEEEEEeCC-CeEEEEEec--CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 29 LQDVDIVSAIEFDKTGDYLAVGDRG-GRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 29 ~~h~~~V~~~~~s~~~~~latg~~d-g~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
+.|...+.+++|+|+|++|++++.+ +.|.+|+++ ++.. +.+..+..+
T Consensus 34 ~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~~~~----- 83 (343)
T 1ri6_A 34 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-------------------------TFAAESALP----- 83 (343)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-------------------------EEEEEEECS-----
T ss_pred EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-------------------------eeccccccC-----
Confidence 4577889999999999999888876 899999997 3332 122223222
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEee-CCCeEEEEEeccccee-EEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVK-KIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
..+..++| +++++++++++ .++.|.+|++..+... ..........+.+++|.+....++...
T Consensus 84 --------~~~~~~~~--s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~------ 147 (343)
T 1ri6_A 84 --------GSLTHIST--DHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA------ 147 (343)
T ss_dssp --------SCCSEEEE--CTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEE------
T ss_pred --------CCCcEEEE--cCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEec------
Confidence 35788999 78999887766 4889999999533221 122222223344444443322222111
Q ss_pred eccCCccccccceEEEeccCccccccce--eeccCCCCCeeEEEeCCCCCEEEE-e-CCCeEEEEEcCC-Ccce--eeee
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNINSISNNSDCETFVS-A-DDLRINLWNLEI-SDQC--FNIV 256 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~-~~~~--~~~~ 256 (457)
..++.+.+|++.......... .........+..++|+|+++++++ + .++.|.+|+++. .+.. ...+
T Consensus 148 -------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~ 220 (343)
T 1ri6_A 148 -------LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL 220 (343)
T ss_dssp -------GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEE
T ss_pred -------CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeec
Confidence 124579999987522222211 221234457889999999997654 5 899999999963 2222 2221
Q ss_pred ecCCCcccCCCCceEEEEEecCCccEEE-EEccCCeEEEEEccC--CeeeccccccccccccccCcccceeccccceEEE
Q 012721 257 DMKPSNMDDLTEVITSAEFHPIYCNLLA-YSSSRGFVRLVDMRQ--SALCDHSARILRDAAESHGSKSFFTEIIASISDI 333 (457)
Q Consensus 257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~-~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 333 (457)
...+.. ......+..++|+|++ ++|+ ++..++.|.+||+.. +... ....+. .+ ..+..+
T Consensus 221 ~~~~~~-~~~~~~~~~i~~s~dg-~~l~v~~~~~~~i~v~d~~~~~~~~~--~~~~~~-------------~~-~~~~~~ 282 (343)
T 1ri6_A 221 DMMPEN-FSDTRWAADIHITPDG-RHLYACDRTASLITVFSVSEDGSVLS--KEGFQP-------------TE-TQPRGF 282 (343)
T ss_dssp ECSCTT-CCSCCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCCEE--EEEEEE-------------CS-SSCCCE
T ss_pred cccCcc-ccccCCccceEECCCC-CEEEEEecCCCEEEEEEEcCCCCceE--Eeeeec-------------CC-CccceE
Confidence 111000 0113467789999999 6555 566899999999983 2111 011111 11 237889
Q ss_pred EEccCCCeEEEEe-c-CcEEEEeccC
Q 012721 334 KFANDGQHLLSRD-Y-MNLKLWDIRM 357 (457)
Q Consensus 334 ~~s~~g~~l~s~~-~-~~i~~wd~~~ 357 (457)
+|+|+|++|++++ + +.|.+|+++.
T Consensus 283 ~~s~dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 283 NVDHSGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EECTTSSEEEEECTTTCEEEEEEEET
T ss_pred EECCCCCEEEEecCCCCeEEEEEEcC
Confidence 9999999888775 3 9999997653
No 152
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=1.8e-18 Score=158.94 Aligned_cols=245 Identities=11% Similarity=0.066 Sum_probs=156.5
Q ss_pred CcEEEEEEEecCCCCEEEEeeC---CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 114 EKINRVRWCAAPNGSMFILSTN---DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+..++| +|+|+ +++++. ++.|.+|++.++........
T Consensus 40 ~~p~~~a~--spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~----------------------------------- 81 (347)
T 3hfq_A 40 QNPTYLAL--SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTV----------------------------------- 81 (347)
T ss_dssp SCCCCEEE--CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEE-----------------------------------
T ss_pred CCcceEEE--ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeee-----------------------------------
Confidence 45677999 78998 555543 68999999987654332110
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCc----cc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSN----MD 264 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~----~~ 264 (457)
..+...+..++|+|++++|+++ .++.|.+|++...+....+....... ..
T Consensus 82 ------------------------~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~ 137 (347)
T 3hfq_A 82 ------------------------VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPE 137 (347)
T ss_dssp ------------------------EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTT
T ss_pred ------------------------ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCcc
Confidence 2344567889999999987776 68999999996443322221110000 00
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEcc-CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL 343 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~ 343 (457)
.....+.+++|+|+| +++++...++.|.+||+. .++.... ..+.. ........++|+|+|++|+
T Consensus 138 ~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g~~~~~--~~~~~------------~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 138 QDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAGQLSEQ--SVLTM------------EAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp CSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTSCEEEE--EEEEC------------CTTCCEEEEEECTTSSEEE
T ss_pred ccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCCcEEEe--eeEEc------------CCCCCCceEEECCCCCEEE
Confidence 123458899999999 677777789999999998 4432110 00010 0113567899999999877
Q ss_pred EEe-c-CcEEEEeccCC-CCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEE-EEeCCCcEEEEecCCCC
Q 012721 344 SRD-Y-MNLKLWDIRMD-STP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 344 s~~-~-~~i~~wd~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~dg~i~iw~~~~~~ 417 (457)
+++ . +.|.+|+++.. ++. +..+....... ........++|+|||++|+ +...++.|.+|++....
T Consensus 203 v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~---------~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 203 LAGELSSQIASLKYDTQTGAFTQLGIVKTIPADY---------TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEEEESSCTTC---------CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEeeeeeecCCCC---------CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 654 3 89999998742 222 11222111100 0000125799999999874 55668999999997331
Q ss_pred --ceeeEEecCCCcceeeeeccCCcceec
Q 012721 418 --AGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 418 --~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
.....+..+...+..++|+|++.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~spdg~~l~v 302 (347)
T 3hfq_A 274 HLTLIQQISTEGDFPRDFDLDPTEAFVVV 302 (347)
T ss_dssp CEEEEEEEECSSSCCCEEEECTTSSEEEE
T ss_pred cEEEeEEEecCCCCcCeEEECCCCCEEEE
Confidence 334455666677899999999985544
No 153
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.84 E-value=6.5e-20 Score=185.58 Aligned_cols=282 Identities=12% Similarity=0.080 Sum_probs=176.6
Q ss_pred EEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCc
Q 012721 36 SAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEK 115 (457)
Q Consensus 36 ~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~ 115 (457)
.+++|+|+|++++++ .|++|++||+.+++.. ..+.+|... ...
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~---------------------------~~~~~~~~~---------~~~ 61 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQSY---------------------------TILSNRTMK---------SVN 61 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCCEE---------------------------EEECHHHHH---------TTT
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCcEE---------------------------EEEcccccc---------ccc
Confidence 378999999766655 6899999999887632 223333200 013
Q ss_pred EEEEEEEecCCCCEEEEeeC---------CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 116 INRVRWCAAPNGSMFILSTN---------DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
|.+++| +|||++|++++. ++.|++||+.+++....
T Consensus 62 ~~~~~~--SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~---------------------------------- 105 (719)
T 1z68_A 62 ASNYGL--SPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG---------------------------------- 105 (719)
T ss_dssp CSEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS----------------------------------
T ss_pred eeeEEE--CCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc----------------------------------
Confidence 889999 899999998876 78999999988764110
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC--ccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS--NMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~--~~~ 264 (457)
......+..++|+|||+.|+.+.++.|++||+. .+...++...... .+.
T Consensus 106 ----------------------------~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~-~g~~~~l~~~~~~~~v~~ 156 (719)
T 1z68_A 106 ----------------------------NELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRP-GDPPFQITFNGRENKIFN 156 (719)
T ss_dssp ----------------------------SCCCSSBCCEEECSSTTCEEEEETTEEEEESST-TSCCEECCCCCBTTTEEE
T ss_pred ----------------------------eecCcccccceECCCCCEEEEEECCeEEEEeCC-CCCcEEEecCCCcCCeEc
Confidence 001135778999999999999978899999998 4444433110000 011
Q ss_pred CCCCc---------eEEEEEecCCccEEEEEccCC----------------------------------eEEEEEccCCe
Q 012721 265 DLTEV---------ITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSA 301 (457)
Q Consensus 265 ~~~~~---------i~~v~~~p~~~~~l~~~~~dg----------------------------------~i~lwd~~~~~ 301 (457)
++... ..+++|+||| +.|++++.|. .|++||+.+++
T Consensus 157 g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 157 GIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp SSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred ccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 22211 1489999999 9999887552 78889988764
Q ss_pred eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-----CcEEEEe----ccCCCCceeEe----eec
Q 012721 302 LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWD----IRMDSTPVATF----KIH 368 (457)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----~~i~~wd----~~~~~~~~~~~----~~~ 368 (457)
... ...+.. ...+.+|...+..++|+||++++++..+ ..|.+|| +.+ ++....+ ..|
T Consensus 236 ~~~-~~~~~~--------~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~-g~~~~~~~~~~~~~ 305 (719)
T 1z68_A 236 YVG-PQEVPV--------PAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT-WDCPKTQEHIEESR 305 (719)
T ss_dssp HHC-CEECCC--------CHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS-EECCGGGEEEEECS
T ss_pred ccc-eeEccC--------CccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC-CceEEEEecccccC
Confidence 210 000000 0112346678999999999988777432 3488889 654 4443333 244
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEEE--EeCCC--cEEEEecCCCCceeeEEecCCCcceeeeeccCCccee
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT--GSYSN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARR 443 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s--~~~dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~ 443 (457)
...+... ....+.|+|||+.|+. ...+| .|++|++.+++ ...+..+...+..+.++ ++....
T Consensus 306 ~~~~~~~----------~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt~~~~~v~~~~~~-d~~~i~ 371 (719)
T 1z68_A 306 TGWAGGF----------FVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN--AIQITSGKWEAINIFRV-TQDSLF 371 (719)
T ss_dssp SSCSSSS----------SCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT--CEECSCSSSCEEEEEEE-CSSEEE
T ss_pred CceEccc----------cCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc--eEecccCceEEEEEEEE-eCCEEE
Confidence 4432100 0016899999996554 44555 57777877663 34455555566666666 544433
No 154
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=2.6e-18 Score=158.15 Aligned_cols=242 Identities=11% Similarity=0.042 Sum_probs=166.5
Q ss_pred cCCceEEEEECCCCCEEE-EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
....+..++|+|+|++++ ++..++.|.+||..+++. +..+..+.... ..
T Consensus 87 ~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~---------------------------~~~~~~~~~~~---~~ 136 (353)
T 3vgz_A 87 NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEV---------------------------KGRLVLDDRKR---TE 136 (353)
T ss_dssp ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCE---------------------------EEEEESCCCCC---CS
T ss_pred cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCee---------------------------EEEEecCCCcc---cc
Confidence 345678899999999555 455679999999987763 22333222000 00
Q ss_pred ccccCcEEEEEEEecCCCCEEEEee--CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILST--NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
......+.++.| +++++++++++ .++.|.+||..+++....+
T Consensus 137 ~~~~~~~~~~~~--s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~---------------------------------- 180 (353)
T 3vgz_A 137 EVRPLQPRELVA--DDATNTVYISGIGKESVIWVVDGGNIKLKTAI---------------------------------- 180 (353)
T ss_dssp SCCCCEEEEEEE--ETTTTEEEEEEESSSCEEEEEETTTTEEEEEE----------------------------------
T ss_pred ccCCCCCceEEE--CCCCCEEEEEecCCCceEEEEcCCCCceEEEe----------------------------------
Confidence 000012688999 68888777765 5788999999887655432
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..+...+.+++|+|+++.++++ .++.|.+||+. .++....+... ..++
T Consensus 181 ---------------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~-~~~~~~~~~~~---~~~~ 229 (353)
T 3vgz_A 181 ---------------------------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTA-DNKILSRKKLL---DDGK 229 (353)
T ss_dssp ---------------------------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETT-TTEEEEEEECC---CSSS
T ss_pred ---------------------------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECC-CCeEEEEEEcC---CCCC
Confidence 1133346788999999999998 99999999998 55555544321 1235
Q ss_pred CCceEEEEEecCCccEEEEE-ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 267 TEVITSAEFHPIYCNLLAYS-SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
...+..++|+|++ +.++++ ..++.|.+||+.+++.. ..+.. .....++|+|+|++++.+
T Consensus 230 ~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~----~~~~~---------------~~~~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 230 EHFFINISLDTAR-QRAFITDSKAAEVLVVDTRNGNIL----AKVAA---------------PESLAVLFNPARNEAYVT 289 (353)
T ss_dssp CCCEEEEEEETTT-TEEEEEESSSSEEEEEETTTCCEE----EEEEC---------------SSCCCEEEETTTTEEEEE
T ss_pred CcccceEEECCCC-CEEEEEeCCCCEEEEEECCCCcEE----EEEEc---------------CCCceEEECCCCCEEEEE
Confidence 5678899999999 655554 45699999999887543 22222 112468999999977655
Q ss_pred e--cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 346 D--YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 346 ~--~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
+ ++.|.+||..+ ++.+..+...... ..++|+|||++|+.+..++
T Consensus 290 ~~~~~~v~~~d~~~-~~~~~~~~~~~~~----------------~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 290 HRQAGKVSVIDAKS-YKVVKTFDTPTHP----------------NSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp ETTTTEEEEEETTT-TEEEEEEECCSEE----------------EEEEECTTSCEEEEEEECC
T ss_pred ECCCCeEEEEECCC-CeEEEEEecCCCC----------------CeEEEcCCCCEEEEEEccc
Confidence 4 49999999975 6777666654432 5899999999887776654
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.84 E-value=1.3e-18 Score=161.10 Aligned_cols=258 Identities=11% Similarity=0.013 Sum_probs=164.5
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEec-CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETV-GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
..+..++|+|+|++|++++.+ .|.+|++. +++.. .+.....+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~-------------------------~~~~~~~~----------- 82 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIV-------------------------HEASHPIG----------- 82 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEE-------------------------EEEEEECC-----------
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEE-------------------------EeeEeecC-----------
Confidence 468899999999999999887 89999987 55421 11111111
Q ss_pred ccCcEEEEEEEecCCCCE--EEEee-------------CCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccc
Q 012721 112 IEEKINRVRWCAAPNGSM--FILST-------------NDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~--l~s~s-------------~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (457)
+.+.+++| +|+|++ ++++. .++.+.+|++. +++.......
T Consensus 83 --g~~~~~~~--spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~-------------------- 138 (365)
T 1jof_A 83 --GHPRANDA--DTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQN-------------------- 138 (365)
T ss_dssp --SSGGGGCT--TSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEE--------------------
T ss_pred --CCCccEEE--CCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEee--------------------
Confidence 11334677 788884 44553 68899999987 3543322110
Q ss_pred cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCccee
Q 012721 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCF 253 (457)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~ 253 (457)
+...+...+.+++|+|+|++++++ .++.|++||++..++..
T Consensus 139 -------------------------------------~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~ 181 (365)
T 1jof_A 139 -------------------------------------YEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE 181 (365)
T ss_dssp -------------------------------------EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE
T ss_pred -------------------------------------EEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEE
Confidence 001244578899999999988876 57899999997223222
Q ss_pred eeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEcc--CCeeec--cccccccccccccCcccceecccc
Q 012721 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR--QSALCD--HSARILRDAAESHGSKSFFTEIIA 328 (457)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~ 328 (457)
.+... ....|...+..++|+|+| +++++++ .++.|.+|++. +++... .....+.. .+.+|..
T Consensus 182 ~~~~~---~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~---------~~~g~~~ 248 (365)
T 1jof_A 182 LVGSV---DAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP---------GIPDRDP 248 (365)
T ss_dssp EEEEE---ECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT---------TCCCBCT
T ss_pred EeeeE---ecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC---------CcCCccc
Confidence 11100 011234668999999999 7777665 57899999875 343210 00111111 0112222
Q ss_pred ------ceEEEE-EccCCCeEEEEec--C-----cEEEEeccCCCCceeE---eeeccccccccccccCCCCccccceEE
Q 012721 329 ------SISDIK-FANDGQHLLSRDY--M-----NLKLWDIRMDSTPVAT---FKIHEHLRPKLCDLYNNDSIFDKFECS 391 (457)
Q Consensus 329 ------~v~~~~-~s~~g~~l~s~~~--~-----~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (457)
.+..++ |+|||++|++++. + .|.+|++...++.... ...+.... ..++
T Consensus 249 ~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~---------------~~~a 313 (365)
T 1jof_A 249 ETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGG---------------HSNA 313 (365)
T ss_dssp TTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCT---------------TCCC
T ss_pred ccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCc---------------ccce
Confidence 578999 9999999886542 3 8999999633444321 22222111 4789
Q ss_pred EcC---CCcEEEEEeCC-CcEEEEecCCC
Q 012721 392 VSG---DGLHFATGSYS-NLLRIFSHGVG 416 (457)
Q Consensus 392 ~s~---d~~~l~s~~~d-g~i~iw~~~~~ 416 (457)
|+| ||++|++++.+ +.|.+|+++..
T Consensus 314 ~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 314 VSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 999 89999998875 89999999765
No 156
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=2.2e-19 Score=181.90 Aligned_cols=295 Identities=10% Similarity=0.035 Sum_probs=179.9
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCC--ceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFP--FVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..+.+++| +++|+++++ +.|++|++||+.+++........... .+.+++|++....++........ ....
T Consensus 17 ~~~~~~~~--spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-----~~~~ 88 (723)
T 1xfd_A 17 IHDPEAKW--ISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-----YQHS 88 (723)
T ss_dssp CCCCCCCB--SSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-----SSSC
T ss_pred ccccccEE--cCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccc-----eeec
Confidence 34677899 789987665 78999999999999876665432211 36677776654333332211000 0011
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCc--ccCCC--
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSN--MDDLT-- 267 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-- 267 (457)
..+.+.+||+++... +.+... .+|...+..++|+|||+.|+.+.++.|++||+. .++..++....... +.++.
T Consensus 89 ~~~~i~~~d~~~~~~-~~l~~~-~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~g~~~~~~~~~~~~~~~~g~~~~ 165 (723)
T 1xfd_A 89 YTGYYVLSKIPHGDP-QSLDPP-EVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHV-GKQAIRVVSTGKEGVIYNGLSDW 165 (723)
T ss_dssp CCSEEEEEESSSCCC-EECCCT-TCCSCCCSBCCBCSSTTCEEEEETTEEEEESSS-SSCCEEEECCCBTTTEEEEECCH
T ss_pred ceeeEEEEECCCCce-EeccCC-ccccccccccEECCCCCEEEEEECCeEEEEECC-CCceEEEecCCCCCceECcccce
Confidence 235788999875432 122211 345556899999999999999955899999998 45555442110000 00011
Q ss_pred -------CceEEEEEecCCccEEEEEccCC----------------------------------eEEEEEccCCeeeccc
Q 012721 268 -------EVITSAEFHPIYCNLLAYSSSRG----------------------------------FVRLVDMRQSALCDHS 306 (457)
Q Consensus 268 -------~~i~~v~~~p~~~~~l~~~~~dg----------------------------------~i~lwd~~~~~~~~~~ 306 (457)
..+.+++|+||| +.|++++.|+ .|++||+.+++..
T Consensus 166 v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~--- 241 (723)
T 1xfd_A 166 LYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD--- 241 (723)
T ss_dssp HHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC---
T ss_pred eEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee---
Confidence 123789999999 8888887543 7888888776421
Q ss_pred cccccccccccCcccceeccccceEEEEEccCCCeEEEEe----c-CcEEEEeccCCCCceeEeeec-cccccccccccC
Q 012721 307 ARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYN 380 (457)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~-~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~ 380 (457)
..+..+ ..+..+...+..++|+|||++|++.. . ..|++||+.+ ++....+..+ ...+...
T Consensus 242 -~~l~~~-------~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~~~~~----- 307 (723)
T 1xfd_A 242 -LEMMPP-------DDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATT-GVCTKKHEDESEAWLHRQ----- 307 (723)
T ss_dssp -EECCCC-------CCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTT-CCEEEEEEEECSSCCCCC-----
T ss_pred -EEeeCC-------ccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCC-CcceEEEEeccCCEEecc-----
Confidence 111110 00122356789999999999987653 2 5799999975 5655554433 2221000
Q ss_pred CCCccccceEEEcCCCcEEEE--EeCCC------cEEEEec-CCCCc--eeeEEecCCCcce-eeeeccCCcceec
Q 012721 381 NDSIFDKFECSVSGDGLHFAT--GSYSN------LLRIFSH-GVGSA--GGITVEAGKNENR-KPILQAAPRARRS 444 (457)
Q Consensus 381 ~~~~~~v~~~~~s~d~~~l~s--~~~dg------~i~iw~~-~~~~~--~~~~~~~~~~~v~-~~~~~p~~~~~~~ 444 (457)
...++|+|||+.|+. +..++ .|++||+ .++ . ....+..+...+. .++|+|++....+
T Consensus 308 ------~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~ 376 (723)
T 1xfd_A 308 ------NEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS-SNDNIQSITSGDWDVTKILAYDEKGNKIYF 376 (723)
T ss_dssp ------CCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS-SSCCCCBSCCSSSCEEEEEEEETTTTEEEE
T ss_pred ------CCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCC-CccceeEeecCCeEEEeeeEEcCCCCEEEE
Confidence 026899999997775 45666 5777773 444 3 1333433334444 4689999987654
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=2.2e-18 Score=160.95 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=170.2
Q ss_pred EEECCCCCEEEEEeC-CCe--EEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccC
Q 012721 38 IEFDKTGDYLAVGDR-GGR--VILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEE 114 (457)
Q Consensus 38 ~~~s~~~~~latg~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 114 (457)
.+|||||++||.++. +|. |.+||+.+++. .....++. .
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~---------------------------~~lt~~~~------------~ 81 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA---------------------------TQLTEGRG------------D 81 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEE---------------------------EECCCSSC------------B
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCce---------------------------EEeeeCCC------------C
Confidence 889999999998887 674 77778776653 12233443 3
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
.+..+.| +|+++.|+.++.++.|++||+.+++...+...
T Consensus 82 ~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~--------------------------------------- 120 (388)
T 3pe7_A 82 NTFGGFL--SPDDDALFYVKDGRNLMRVDLATLEENVVYQV--------------------------------------- 120 (388)
T ss_dssp CSSSCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEEC---------------------------------------
T ss_pred CccceEE--cCCCCEEEEEeCCCeEEEEECCCCcceeeeec---------------------------------------
Confidence 3445678 79999999999999999999998876544321
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeE--EEeCCCCCEEEE----------------------e-CCCeEEEEEcCCC
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINS--ISNNSDCETFVS----------------------A-DDLRINLWNLEIS 249 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~~l~~----------------------~-~d~~i~iwd~~~~ 249 (457)
+...+.. ..++|++..++. . .+..|++||+. .
T Consensus 121 ----------------------~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-~ 177 (388)
T 3pe7_A 121 ----------------------PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLK-T 177 (388)
T ss_dssp ----------------------CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETT-T
T ss_pred ----------------------hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECC-C
Confidence 1112222 234777777763 2 44789999998 4
Q ss_pred cceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccC------CeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 250 DQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
++...+ ..+...+..++|+| +| +.|+....+ ..|.++|+..++.. .+... .
T Consensus 178 g~~~~l--------~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~-~-------- 235 (388)
T 3pe7_A 178 GESTVI--------LQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTH-A-------- 235 (388)
T ss_dssp CCEEEE--------EEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCC-C--------
T ss_pred CceEEe--------ecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeC-C--------
Confidence 544433 33456789999999 98 878776653 36778887654321 11111 0
Q ss_pred eeccccceEEEEEccCCCeEEEEe--c-C---cEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 323 FTEIIASISDIKFANDGQHLLSRD--Y-M---NLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g~~l~s~~--~-~---~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
....+..+.|+|||+.|+..+ + + .|++||+.+ ++. +..+.++..... ......|+|
T Consensus 236 ---~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~-g~~~~l~~~~~~~~~~~------------~~~~~~~sp 299 (388)
T 3pe7_A 236 ---EGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPET-LENRQLTSMPACSHLMS------------NYDGSLMVG 299 (388)
T ss_dssp ---TTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTT-CCEEEEEEECCEEEEEE------------CTTSSEEEE
T ss_pred ---CCcccccceECCCCCEEEEEecCCCCCcceEEEEecCC-CceEEEEcCCCceeeee------------cCCCCeEcc
Confidence 012477889999999887543 2 2 399999975 443 222222110000 002458999
Q ss_pred CCcEEEEE---------eCCCcEEEEecCCCCceeeEEecCCC-----------cceeeeeccCCcceec
Q 012721 395 DGLHFATG---------SYSNLLRIFSHGVGSAGGITVEAGKN-----------ENRKPILQAAPRARRS 444 (457)
Q Consensus 395 d~~~l~s~---------~~dg~i~iw~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~~~~ 444 (457)
||+.|+.. ..+..|++||+.++ + ...+..+.. .+..++|+||+....+
T Consensus 300 dg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~-~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~ 367 (388)
T 3pe7_A 300 DGSDAPVDVQDDSGYKIENDPFLYVFNMKNG-T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILF 367 (388)
T ss_dssp EECCC------------CCCCEEEEEETTTT-E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEE
T ss_pred CCCcceeEeeeccccccCCCCEEEEEeccCC-c-eEEeccccCcccccccccccCCCCccCCCCCCEEEE
Confidence 99988854 45668999999987 3 345555655 5788999999976665
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.82 E-value=2.7e-18 Score=173.89 Aligned_cols=271 Identities=12% Similarity=0.086 Sum_probs=170.0
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
....+++|+|||++|+++ ||+|++|++.+++. ...+.+|... . .
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~---------------------------~~~~~~~~~~-----~--~ 60 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNS---------------------------SVFLENSTFD-----E--F 60 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCE---------------------------EEEECTTTTT-----T--C
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCce---------------------------EEEEechhhh-----h--h
Confidence 346689999999999986 89999999988763 2345555511 0 0
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCC---------CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 113 EEKINRVRWCAAPNGSMFILSTND---------KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
......+.| ||||++|+.++.+ +.+.+||+.+++...+
T Consensus 61 ~~~~~~~~~--Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l------------------------------- 107 (740)
T 4a5s_A 61 GHSINDYSI--SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE------------------------------- 107 (740)
T ss_dssp CSCCCEEEE--CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------------------------
T ss_pred cccccceEE--CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-------------------------------
Confidence 022345788 8999999998876 4556888877754321
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcc
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM 263 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 263 (457)
..|...+...+|+|||+.||.+.|+.|++|++. .+...++. .
T Consensus 108 -------------------------------~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~-~~~~~~lt------~ 149 (740)
T 4a5s_A 108 -------------------------------ERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEP-NLPSYRIT------W 149 (740)
T ss_dssp -------------------------------SCCCTTEEEEEECSSTTCEEEEETTEEEEESST-TSCCEECC------S
T ss_pred -------------------------------ccCCCcceeeEECCCCCEEEEEECCeEEEEECC-CCceEEEc------C
Confidence 455667999999999999999988999999998 44444331 1
Q ss_pred cCCCCce-----------------EEEEEecCCccEEEEEccCC------------------------------------
Q 012721 264 DDLTEVI-----------------TSAEFHPIYCNLLAYSSSRG------------------------------------ 290 (457)
Q Consensus 264 ~~~~~~i-----------------~~v~~~p~~~~~l~~~~~dg------------------------------------ 290 (457)
.++...+ ..+.|+||| +.|+.++.|.
T Consensus 150 ~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~ 228 (740)
T 4a5s_A 150 TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTV 228 (740)
T ss_dssp CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEE
T ss_pred CCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCee
Confidence 2222222 348999999 8888876432
Q ss_pred eEEEEEccC---CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----c-CcEEEEeccCCCC--
Q 012721 291 FVRLVDMRQ---SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y-MNLKLWDIRMDST-- 360 (457)
Q Consensus 291 ~i~lwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~-~~i~~wd~~~~~~-- 360 (457)
.|++||+.+ ++... ...+.. ...+.+|...+..++|+|||+.++... + ..|++||+.+ ++
T Consensus 229 ~l~v~d~~~~~~~~~~~--~~~l~~-------~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t-g~~~ 298 (740)
T 4a5s_A 229 KFFVVNTDSLSSVTNAT--SIQITA-------PASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE-SSGR 298 (740)
T ss_dssp EEEEEETTSCCSSSCCC--EEEECC-------CHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET-TTTE
T ss_pred EEEEEECCCCCCCCcce--EEEecC-------CccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC-Cccc
Confidence 244455444 31000 000000 000113667899999999999777542 1 4799999986 44
Q ss_pred --c--eeEe--eeccccccccccccCCCCccccceEEEcCCCcEEE-EEeC-CC--cEEEEecCCCCceeeEEecCCCcc
Q 012721 361 --P--VATF--KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY-SN--LLRIFSHGVGSAGGITVEAGKNEN 430 (457)
Q Consensus 361 --~--~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~v 430 (457)
+ +..+ ..+...+.. .......|+|||+.|+ ..+. +| .|++|++.++ .......+ ...+
T Consensus 299 ~~~~~~~~l~~~~~~~~v~~----------~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~-~~~~lT~g-~~~v 366 (740)
T 4a5s_A 299 WNCLVARQHIEMSTTGWVGR----------FRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK-DCTFITKG-TWEV 366 (740)
T ss_dssp EEECGGGCEEEECSSSCSSS----------SSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS-SCEESCCS-SSCE
T ss_pred cceeEEEEeeeccCCceEcc----------CcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC-ceEecccC-CEEE
Confidence 1 2222 334443310 0013688999999877 6654 33 5888898876 33333333 4444
Q ss_pred eee
Q 012721 431 RKP 433 (457)
Q Consensus 431 ~~~ 433 (457)
..+
T Consensus 367 ~~~ 369 (740)
T 4a5s_A 367 IGI 369 (740)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=1.1e-16 Score=148.04 Aligned_cols=241 Identities=9% Similarity=0.059 Sum_probs=151.2
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC----CeEEEEEecc--cceeEEEeecCCCceeeeeeccccccccccCCCCCceeccC
Q 012721 114 EKINRVRWCAAPNGSMFILSTND----KTIKLWKVRD--QKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYH 187 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d----~~i~vw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (457)
..+..++| +|++++|++++.+ +.|.+|++.. ++...+...
T Consensus 50 ~~p~~l~~--spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~-------------------------------- 95 (361)
T 3scy_A 50 ANPSYLIP--SADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ-------------------------------- 95 (361)
T ss_dssp SCCCSEEE--CTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE--------------------------------
T ss_pred CCCceEEE--CCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe--------------------------------
Confidence 55778999 7999999998875 7999999876 443322111
Q ss_pred CccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeee---eecC---
Q 012721 188 LEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNI---VDMK--- 259 (457)
Q Consensus 188 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~---~~~~--- 259 (457)
..+......+++ ++++|+++ .++.|.+|++...+..... ....
T Consensus 96 ---------------------------~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~ 146 (361)
T 3scy_A 96 ---------------------------KTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG 146 (361)
T ss_dssp ---------------------------ECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred ---------------------------ccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence 123345666777 77777665 7899999999743322111 0000
Q ss_pred CCcccCCCCceEEEEEecCCccEE-EEEccCCeEEEEEccCCee------e-cc-ccccccccccccCcccceeccccce
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMRQSAL------C-DH-SARILRDAAESHGSKSFFTEIIASI 330 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~~~~~------~-~~-~~~~~~~~~~~~~~~~~~~~h~~~v 330 (457)
+.....+...+.+++|+|+| ++| ++...++.|.+|++..... . .. ...... ..+....
T Consensus 147 ~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~------------~~~~~~~ 213 (361)
T 3scy_A 147 PDKERQTMPHLHCVRITPDG-KYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK------------VAPGSGP 213 (361)
T ss_dssp SCTTTCSSCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE------------CCTTCCE
T ss_pred CCccccCCCcceEEEECCCC-CEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee------------cCCCCCC
Confidence 00011223446889999999 755 5555689999999876431 1 00 000000 1113457
Q ss_pred EEEEEccCCCeEEEEe--cCcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-
Q 012721 331 SDIKFANDGQHLLSRD--YMNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS- 405 (457)
Q Consensus 331 ~~~~~s~~g~~l~s~~--~~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d- 405 (457)
..++|+|+|+++++++ ++.|.+|++.. ++. +..+....... .....++|+|||++|++++.+
T Consensus 214 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~-g~~~~~~~~~~~~~~~------------~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 214 RHLIFNSDGKFAYLINEIGGTVIAFRYAD-GMLDEIQTVAADTVNA------------QGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECTTSSEEEEEETTTCEEEEEEEET-TEEEEEEEEESCSSCC------------CCEEEEEECTTSSEEEEEECSS
T ss_pred eEEEEcCCCCEEEEEcCCCCeEEEEEecC-CceEEeEEEecCCCCC------------CCcccEEECCCCCEEEEECCCC
Confidence 8899999999888765 39999999974 433 22222111100 011479999999999776654
Q ss_pred -CcEEEEecC--CCCc-eeeEEecCCCcceeeeeccCCcceec
Q 012721 406 -NLLRIFSHG--VGSA-GGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 406 -g~i~iw~~~--~~~~-~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+.|.+|++. +++. ....+.. ...+..++|+|++.....
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~ 322 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLV 322 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEE
Confidence 899999996 4421 2333344 567889999999985554
No 160
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.80 E-value=3.6e-18 Score=172.74 Aligned_cols=281 Identities=9% Similarity=0.023 Sum_probs=177.4
Q ss_pred ceEEEEECCCCCEEEEEeC---------CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 34 IVSAIEFDKTGDYLAVGDR---------GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~---------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
.|.+++|||||++||+++. ++.|++||+.+++.. ....+ .
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~-------------------------~~~~l---~--- 109 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFV-------------------------RGNEL---P--- 109 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC-------------------------CSSCC---C---
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccc-------------------------cceec---C---
Confidence 3899999999999999876 689999999887631 00011 1
Q ss_pred cccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 105 DYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
..+..++| +|||+.|+.+. |+.|++|++.+++...+.......
T Consensus 110 ---------~~~~~~~~--SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~------------------------- 152 (719)
T 1z68_A 110 ---------RPIQYLCW--SPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGREN------------------------- 152 (719)
T ss_dssp ---------SSBCCEEE--CSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTT-------------------------
T ss_pred ---------cccccceE--CCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcC-------------------------
Confidence 34788999 89999999886 789999999887654321100000
Q ss_pred ccCCccccccceEEEeccCccccccceeeccCCC---------CCeeEEEeCCCCCEEEEe-CCC---------------
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQKVYPHAHD---------FNINSISNNSDCETFVSA-DDL--------------- 239 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~~~-~d~--------------- 239 (457)
.++ .++. ....+++|+|||+.|+++ .|.
T Consensus 153 --------------------------~v~-~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~ 205 (719)
T 1z68_A 153 --------------------------KIF-NGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQ 205 (719)
T ss_dssp --------------------------TEE-ESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSS
T ss_pred --------------------------CeE-cccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCC
Confidence 000 1222 123589999999999987 442
Q ss_pred -------------------eEEEEEcCCCccee---eeeecCCCcccCCCCceEEEEEecCCccEEEEEccC----CeEE
Q 012721 240 -------------------RINLWNLEISDQCF---NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR----GFVR 293 (457)
Q Consensus 240 -------------------~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d----g~i~ 293 (457)
.|++||+. .+... .+. .+..+.+|...+..++|+||+ +++++.... ..|.
T Consensus 206 ~~~~~~~~yp~~g~~~~~~~l~~~d~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~SpD~-~~~~~~~~~~~~~~~l~ 281 (719)
T 1z68_A 206 YPRTINIPYPKAGAKNPVVRIFIIDTT-YPAYVGPQEVP--VPAMIASSDYYFSWLTWVTDE-RVCLQWLKRVQNVSVLS 281 (719)
T ss_dssp SCEEEEEECCBTTSCCCEEEEEEEESS-CHHHHCCEECC--CCHHHHTSCEEEEEEEESSSS-EEEEEEEESSTTEEEEE
T ss_pred CccceeecCCCCCCCCCeeEEEEEECC-CCCccceeEcc--CCccCCCCcceEEEeEEeCCC-eEEEEEeccccCeEEEE
Confidence 78899998 44432 210 112245688889999999998 877774432 3488
Q ss_pred EEE----ccCCeeeccccccccccccccCcccceeccccceE-----EEEEccCCCeEEE--Ee-cC--cEEEEeccCCC
Q 012721 294 LVD----MRQSALCDHSARILRDAAESHGSKSFFTEIIASIS-----DIKFANDGQHLLS--RD-YM--NLKLWDIRMDS 359 (457)
Q Consensus 294 lwd----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-----~~~~s~~g~~l~s--~~-~~--~i~~wd~~~~~ 359 (457)
+|| +.+++.. .+... ...+|...+. .+.|+|||+.|+. .. ++ .|.+||+.. +
T Consensus 282 ~~d~~~~~~~g~~~----~~~~~---------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~-~ 347 (719)
T 1z68_A 282 ICDFREDWQTWDCP----KTQEH---------IEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV-E 347 (719)
T ss_dssp EEEECSSSSSEECC----GGGEE---------EEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS-T
T ss_pred EEcccCCCCCCceE----EEEec---------ccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC-C
Confidence 889 7665432 22210 0012334455 7899999997654 32 23 577777753 3
Q ss_pred CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-----CcEEEEecCC--CCceeeEEe----cCCC
Q 012721 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGV--GSAGGITVE----AGKN 428 (457)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~iw~~~~--~~~~~~~~~----~~~~ 428 (457)
+ ...+..+...+ ..+.++ +++.|+..+.+ +.+++|.+.. +......+. +|..
T Consensus 348 ~-~~~lt~~~~~v---------------~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~ 410 (719)
T 1z68_A 348 N-AIQITSGKWEA---------------INIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERC 410 (719)
T ss_dssp T-CEECSCSSSCE---------------EEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTB
T ss_pred c-eEecccCceEE---------------EEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCC
Confidence 3 44444333222 356666 77777766654 8899998765 311122222 2566
Q ss_pred cceeeeeccCCcceec
Q 012721 429 ENRKPILQAAPRARRS 444 (457)
Q Consensus 429 ~v~~~~~~p~~~~~~~ 444 (457)
.+..+.|+|++...+.
T Consensus 411 ~~~~~~~s~dg~~l~~ 426 (719)
T 1z68_A 411 QYYTASFSDYAKYYAL 426 (719)
T ss_dssp CBEEEEECGGGSSEEE
T ss_pred ceEEEEECCCCCEEEE
Confidence 7788999998876554
No 161
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.79 E-value=3.1e-16 Score=139.83 Aligned_cols=260 Identities=12% Similarity=0.153 Sum_probs=176.8
Q ss_pred hhhHHhhhcCCCCCCccccCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccc
Q 012721 13 EWKCSQAFGERNPDEELQDVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYR 92 (457)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (457)
.|.+...|+. ......+...+.+++++++|+++++...++.|.+|+.+...
T Consensus 12 ~~~~~~~~g~--~g~~~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~--------------------------- 62 (286)
T 1q7f_A 12 RMIYHCKFGE--FGVMEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRF--------------------------- 62 (286)
T ss_dssp EECEEEEECC--BSSSTTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCE---------------------------
T ss_pred eeEEEEeccC--CCCCCCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcE---------------------------
Confidence 3444444554 23334467789999999999999988889999999976322
Q ss_pred eeeeec------cCCccccccccccccCcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeecCCCceeeee
Q 012721 93 YKTEFQ------SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 93 ~~~~~~------~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 165 (457)
+..+. ++. ..+..+++. .+++.++++... ++.|.+|+ .+++....+.
T Consensus 63 -~~~~~~~~~~~~~~------------~~p~~i~~~-~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~----------- 116 (286)
T 1q7f_A 63 -KFQFGECGKRDSQL------------LYPNRVAVV-RNSGDIIVTERSPTHQIQIYN-QYGQFVRKFG----------- 116 (286)
T ss_dssp -EEEECCBSSSTTCB------------SSEEEEEEE-TTTTEEEEEECGGGCEEEEEC-TTSCEEEEEC-----------
T ss_pred -EEEecccCCCcccc------------cCceEEEEE-cCCCeEEEEcCCCCCEEEEEC-CCCcEEEEec-----------
Confidence 11221 122 457888884 256655555533 78999999 4444332211
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEE
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLW 244 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iw 244 (457)
..+...+..++++|+++++++. .++.|.+|
T Consensus 117 -------------------------------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 147 (286)
T 1q7f_A 117 -------------------------------------------------ATILQHPRGVTVDNKGRIIVVECKVMRVIIF 147 (286)
T ss_dssp -------------------------------------------------TTTCSCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred -------------------------------------------------CccCCCceEEEEeCCCCEEEEECCCCEEEEE
Confidence 1233467899999999988887 88999999
Q ss_pred EcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
|.. +.....+. ...+...+..++++|+| +++++...++.|++||..... . ..+.. .
T Consensus 148 ~~~--g~~~~~~~-----~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~-~----~~~~~-----------~ 203 (286)
T 1q7f_A 148 DQN--GNVLHKFG-----CSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQY-L----RQIGG-----------E 203 (286)
T ss_dssp CTT--SCEEEEEE-----CTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCE-E----EEESC-----------T
T ss_pred cCC--CCEEEEeC-----CCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCE-E----EEEcc-----------C
Confidence 976 33443321 12344568999999999 888888889999999975432 1 12211 1
Q ss_pred ccccceEEEEEccCCCeEEEEec-C-cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 325 EIIASISDIKFANDGQHLLSRDY-M-NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~~l~s~~~-~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
++...+..++++++|+++++... + .|.+||.. ++.+..+..+..... ...++++|+|+++++
T Consensus 204 g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~--g~~~~~~~~~~~~~~-------------~~~i~~~~~g~l~vs- 267 (286)
T 1q7f_A 204 GITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQ-------------CFDVALMDDGSVVLA- 267 (286)
T ss_dssp TTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSC-------------EEEEEEETTTEEEEE-
T ss_pred CccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC--CCEEEEEcccCCCCc-------------ceeEEECCCCcEEEE-
Confidence 11246789999999988887754 5 99999964 666766665433210 147999999987777
Q ss_pred eCCCcEEEEecCCC
Q 012721 403 SYSNLLRIFSHGVG 416 (457)
Q Consensus 403 ~~dg~i~iw~~~~~ 416 (457)
+.|++|++|++...
T Consensus 268 ~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 268 SKDYRLYIYRYVQL 281 (286)
T ss_dssp ETTTEEEEEECSCC
T ss_pred CCCCeEEEEEcccc
Confidence 67999999998654
No 162
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.79 E-value=8.6e-18 Score=165.67 Aligned_cols=217 Identities=8% Similarity=-0.009 Sum_probs=152.0
Q ss_pred CcEEEEEEEecCCCCEEEEeeC-CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTN-DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
.+|.+++| ++||+.|++++. |++++||++.+++...+.
T Consensus 22 ~~~~~~~~--~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt--------------------------------------- 60 (582)
T 3o4h_A 22 VEKYSLQG--VVDGDKLLVVGFSEGSVNAYLYDGGETVKLN--------------------------------------- 60 (582)
T ss_dssp SCEEEEEE--EETTTEEEEEEEETTEEEEEEEETTEEEECC---------------------------------------
T ss_pred cchheeec--CCCCCeEEEEEccCCceeEEEEcCCCcEeee---------------------------------------
Confidence 57999999 689999999886 999999998766543321
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C---CCeEEEEEcCC--CcceeeeeecCCCcccCC
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D---DLRINLWNLEI--SDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~---d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~ 266 (457)
..+...+..++|+|| ++++++ . +....+|.++. .+....+ ...
T Consensus 61 ----------------------~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l--------~~~ 109 (582)
T 3o4h_A 61 ----------------------REPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQRL--------EAV 109 (582)
T ss_dssp ----------------------SSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCEEC--------TTS
T ss_pred ----------------------cccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccccc--------cCC
Confidence 223357889999999 777766 4 45566665543 2332222 111
Q ss_pred CCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 267 TEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
..+...+|+|++...+++...++.+.+||+.+++.. .+... .. .+++|+|||++|++++
T Consensus 110 -~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~----~l~~~--------------~~--~~~~~spDG~~la~~~ 168 (582)
T 3o4h_A 110 -KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR----ELARL--------------PG--FGFVSDIRGDLIAGLG 168 (582)
T ss_dssp -CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE----EEEEE--------------SS--CEEEEEEETTEEEEEE
T ss_pred -CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE----EeecC--------------CC--ceEEECCCCCEEEEEE
Confidence 123356888887444444444455569999887532 22222 12 7899999999999653
Q ss_pred -c----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC--cEEEEecCCCCce
Q 012721 347 -Y----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN--LLRIFSHGVGSAG 419 (457)
Q Consensus 347 -~----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg--~i~iw~~~~~~~~ 419 (457)
+ +.|++||+.. ++. ..+..+...+ ..++|||||++|+++..++ .|++||+.++ +.
T Consensus 169 ~~~~~~~~i~~~d~~~-g~~-~~l~~~~~~~---------------~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~-~~ 230 (582)
T 3o4h_A 169 FFGGGRVSLFTSNLSS-GGL-RVFDSGEGSF---------------SSASISPGMKVTAGLETAREARLVTVDPRDG-SV 230 (582)
T ss_dssp EEETTEEEEEEEETTT-CCC-EEECCSSCEE---------------EEEEECTTSCEEEEEECSSCEEEEEECTTTC-CE
T ss_pred EcCCCCeEEEEEcCCC-CCc-eEeecCCCcc---------------ccceECCCCCEEEEccCCCeeEEEEEcCCCC-cE
Confidence 3 5799999874 443 4566665543 5899999999999888888 8999999988 44
Q ss_pred eeEEecCCCcceeee--------eccCCcce
Q 012721 420 GITVEAGKNENRKPI--------LQAAPRAR 442 (457)
Q Consensus 420 ~~~~~~~~~~v~~~~--------~~p~~~~~ 442 (457)
. .+.+|...+..+. |+||+...
T Consensus 231 ~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~ 260 (582)
T 3o4h_A 231 E-DLELPSKDFSSYRPTAITWLGYLPDGRLA 260 (582)
T ss_dssp E-ECCCSCSHHHHHCCSEEEEEEECTTSCEE
T ss_pred E-EccCCCcChhhhhhccccceeEcCCCcEE
Confidence 4 7788888899899 99999433
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=1e-15 Score=141.53 Aligned_cols=245 Identities=9% Similarity=-0.003 Sum_probs=152.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEec-ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVR-DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..+..++| ++++++|++++.+ .|.+|++. +++.......
T Consensus 40 ~~~~~~a~--spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~------------------------------------- 79 (365)
T 1jof_A 40 EPISWMTF--DHERKNIYGAAMK-KWSSFAVKSPTEIVHEASH------------------------------------- 79 (365)
T ss_dssp CCCSEEEE--CTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEE-------------------------------------
T ss_pred CCCcEEEE--CCCCCEEEEEccc-eEEEEEECCCCCEEEeeEe-------------------------------------
Confidence 35778999 7899999998888 89999997 6654332111
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCE--EEEe--------------CCCeEEEEEcCCCcceeeee
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCET--FVSA--------------DDLRINLWNLEISDQCFNIV 256 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~~~--------------~d~~i~iwd~~~~~~~~~~~ 256 (457)
..+ +...+++|+|+|++ ++++ .++.+.+|++...+.....+
T Consensus 80 ----------------------~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~ 136 (365)
T 1jof_A 80 ----------------------PIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNV 136 (365)
T ss_dssp ----------------------ECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEE
T ss_pred ----------------------ecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceE
Confidence 001 12445788999984 3333 47899999997444443322
Q ss_pred ecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEcc-CCeeeccccccccccccccCcccceeccccceEEEE
Q 012721 257 DMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (457)
Q Consensus 257 ~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 334 (457)
... ...+...+.+++|+|+| ++|++++ .++.|++||+. +++... ...+.. ..|...+..++
T Consensus 137 ~~~---~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~~~~g~~~~--~~~~~~-----------~~~g~~p~~~~ 199 (365)
T 1jof_A 137 QNY---EYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRKLASGEVEL--VGSVDA-----------PDPGDHPRWVA 199 (365)
T ss_dssp EEE---ECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSCEEE--EEEEEC-----------SSTTCCEEEEE
T ss_pred eeE---EeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEECCCCCEEE--eeeEec-----------CCCCCCCCEeE
Confidence 110 01244678999999999 7777665 46899999998 554321 011110 01235688999
Q ss_pred EccCCCeEEEEec--CcEEEEeccC-CCCcee---EeeeccccccccccccCCC---CccccceEE-EcCCCcEEEEEeC
Q 012721 335 FANDGQHLLSRDY--MNLKLWDIRM-DSTPVA---TFKIHEHLRPKLCDLYNND---SIFDKFECS-VSGDGLHFATGSY 404 (457)
Q Consensus 335 ~s~~g~~l~s~~~--~~i~~wd~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~v~~~~-~s~d~~~l~s~~~ 404 (457)
|+|+|++|++++. +.|.+|+++. .++... .+......... ... ....+..++ |+|||++|++++.
T Consensus 200 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g-----~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 200 MHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPD-----RDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCC-----BCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCC-----cccccccccccccEEEECCCCCEEEEECC
Confidence 9999999987653 8999998753 133321 12111000000 000 000125799 9999999887664
Q ss_pred CC------cEEEEecC-CCCceee---EEecCCCcceeeeecc---CCcceec
Q 012721 405 SN------LLRIFSHG-VGSAGGI---TVEAGKNENRKPILQA---APRARRS 444 (457)
Q Consensus 405 dg------~i~iw~~~-~~~~~~~---~~~~~~~~v~~~~~~p---~~~~~~~ 444 (457)
+. +|.+|++. ++ +... ....+......++|+| ++.....
T Consensus 275 ~~~~~~~~~i~v~~~~~~g-~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v 326 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCG-SIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAI 326 (365)
T ss_dssp ESSTTSCCEEEEEEECTTS-CEEEEEEEEECSSCCTTCCCEEECTTCTTEEEE
T ss_pred CCCCCCCCeEEEEEECCCC-CEEEeeeeeecCCCCcccceecCCCcCCCEEEE
Confidence 32 89999996 55 3332 2334566678899999 7766555
No 164
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.76 E-value=2.1e-16 Score=158.26 Aligned_cols=183 Identities=10% Similarity=0.023 Sum_probs=120.0
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CC----------CeEEEEEcCCC-----cceeeeeecCCCccc-CCCCceEEEEEecCC
Q 012721 217 HDFNINSISNNSDCETFVSA-DD----------LRINLWNLEIS-----DQCFNIVDMKPSNMD-DLTEVITSAEFHPIY 279 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d----------~~i~iwd~~~~-----~~~~~~~~~~~~~~~-~~~~~i~~v~~~p~~ 279 (457)
|...+..++|+|||+.|+++ .+ ..|++||+... +.... +. .+...+..++|+|||
T Consensus 128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~SpDG 199 (662)
T 3azo_A 128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE--------LSDDAHRFVTGPRLSPDG 199 (662)
T ss_dssp TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE--------SSCSCSSEECCCEECTTS
T ss_pred CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE--------EEecCCCcccCceECCCC
Confidence 56678899999999999987 65 58999999831 33332 33 455678889999999
Q ss_pred ccEEEEEccC--------CeEEEEEcc-CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C-
Q 012721 280 CNLLAYSSSR--------GFVRLVDMR-QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M- 348 (457)
Q Consensus 280 ~~~l~~~~~d--------g~i~lwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~- 348 (457)
+.|+.++.+ ..|.+||+. ++... ....+. .+|...+..+.|+|||+++++++. +
T Consensus 200 -~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~-~~~~l~-------------~~~~~~~~~~~~spdg~l~~~~~~~~~ 264 (662)
T 3azo_A 200 -RQAVWLAWDHPRMPWEGTELKTARVTEDGRFA-DTRTLL-------------GGPEEAIAQAEWAPDGSLIVATDRTGW 264 (662)
T ss_dssp -SEEEEEEECTTCCTTTCEEEEEEEECTTSCEE-EEEEEE-------------EETTBCEEEEEECTTSCEEEEECTTSS
T ss_pred -CEEEEEECCCCCCCCCCcEEEEEEECCCCccc-ccEEeC-------------CCCCceEcceEECCCCeEEEEECCCCC
Confidence 888877754 379999998 45110 000111 123467899999999997766654 6
Q ss_pred -cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEE--ecCCCCceeeEEec
Q 012721 349 -NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIF--SHGVGSAGGITVEA 425 (457)
Q Consensus 349 -~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw--~~~~~~~~~~~~~~ 425 (457)
.|.+||+.. ++.......+.... .+.-..++..++|+|+++++++++. +.++|| |+.++ ....+..
T Consensus 265 ~~l~~~~~~~-~~~~~l~~~~~~~~-------~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~--~~~~l~~ 333 (662)
T 3azo_A 265 WNLHRVDPAT-GAATQLCRREEEFA-------GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESG--ELVDAAG 333 (662)
T ss_dssp CEEEEECTTT-CCEEESSCCSSBSS-------CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTT--EEEECCS
T ss_pred eEEEEEECCC-Cceeeccccccccc-------CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCC--cEEEecC
Confidence 566666543 44332222222110 0011111257899999999999999 999999 54444 3566777
Q ss_pred CCCcceee
Q 012721 426 GKNENRKP 433 (457)
Q Consensus 426 ~~~~v~~~ 433 (457)
+...+..+
T Consensus 334 ~~~~~~~~ 341 (662)
T 3azo_A 334 PWTEWAAT 341 (662)
T ss_dssp SCCEEEEE
T ss_pred CCCeEEEE
Confidence 77777766
No 165
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=4.3e-16 Score=142.21 Aligned_cols=229 Identities=13% Similarity=0.056 Sum_probs=152.9
Q ss_pred CEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcccc
Q 012721 128 SMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHA 207 (457)
Q Consensus 128 ~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 207 (457)
+++++++.++.|.+||..+++....+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~----------------------------------------------------- 28 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT----------------------------------------------------- 28 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-----------------------------------------------------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-----------------------------------------------------
Confidence 478899999999999998886654432
Q ss_pred ccceeeccCCCC-CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 208 RCQKVYPHAHDF-NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 208 ~~~~~~~~~h~~-~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
.++.. .+..++|+|+++.+++ + .++.|.+||+. .++....+.... ...+...+.+++|+|+| +.|+
T Consensus 29 -------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~--~~~~~~~~~~~~~s~dg-~~l~ 97 (337)
T 1pby_B 29 -------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV-TGETLGRIDLST--PEERVKSLFGAALSPDG-KTLA 97 (337)
T ss_dssp -------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT-TCCEEEEEECCB--TTEEEECTTCEEECTTS-SEEE
T ss_pred -------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC-CCCeEeeEEcCC--cccccccccceEECCCC-CEEE
Confidence 12211 3678999999987654 5 78999999998 455554432210 00012256789999999 8888
Q ss_pred EEc------------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEE
Q 012721 285 YSS------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 352 (457)
Q Consensus 285 ~~~------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~ 352 (457)
+++ .++.|.+||+.+++.. ..+.. ...+..++|+|+|++|+++ ++.|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~----~~~~~--------------~~~~~~~~~s~dg~~l~~~-~~~i~~ 158 (337)
T 1pby_B 98 IYESPVRLELTHFEVQPTRVALYDAETLSRR----KAFEA--------------PRQITMLAWARDGSKLYGL-GRDLHV 158 (337)
T ss_dssp EEEEEEEECSSCEEECCCEEEEEETTTTEEE----EEEEC--------------CSSCCCEEECTTSSCEEEE-SSSEEE
T ss_pred EEecccccccccccccCceEEEEECCCCcEE----EEEeC--------------CCCcceeEECCCCCEEEEe-CCeEEE
Confidence 775 5799999999887543 22221 2356788999999988887 589999
Q ss_pred EeccCCCCceeEeeeccccccccc-----cc-----------------------------------cCCC----------
Q 012721 353 WDIRMDSTPVATFKIHEHLRPKLC-----DL-----------------------------------YNND---------- 382 (457)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~-----~~-----------------------------------~~~~---------- 382 (457)
||+.. ++....+..+........ .+ ++..
T Consensus 159 ~d~~~-~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~ 237 (337)
T 1pby_B 159 MDPEA-GTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVR 237 (337)
T ss_dssp EETTT-TEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEE
T ss_pred EECCC-CcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecC
Confidence 99975 555554443320000000 00 0000
Q ss_pred -CccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 383 -SIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 383 -~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
....+..++|+||+++|+++ ++.|++||+.++ +....+.. ...+..++|+|++.....
T Consensus 238 ~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~ 296 (337)
T 1pby_B 238 IMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKN-ASIKRVPL-PHSYYSVNVSTDGSTVWL 296 (337)
T ss_dssp ECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECTTSCEEEE
T ss_pred CCCCceeeEEECCCCCEEEEe--CCeEEEEECCCC-cCcceecC-CCceeeEEECCCCCEEEE
Confidence 00012358999999999988 799999999988 44555543 356789999999985554
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.75 E-value=3.5e-15 Score=137.40 Aligned_cols=270 Identities=9% Similarity=0.046 Sum_probs=166.8
Q ss_pred CCCEEEEEe------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcE
Q 012721 43 TGDYLAVGD------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKI 116 (457)
Q Consensus 43 ~~~~latg~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 116 (457)
+++++++.. .|+.|.+||..+++. +..+..+. .+
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~---------------------------~~~i~~g~------------~p- 53 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKF---------------------------LGMVPTAF------------NG- 53 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCE---------------------------EEEEECCE------------EE-
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeE---------------------------EEEecCCC------------CC-
Confidence 556666543 367999999877653 23344333 33
Q ss_pred EEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 117 NRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 117 ~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
.++| ++++++++++. .++.|.+||..+++....+......
T Consensus 54 -~i~~--spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~--------------------------- 103 (361)
T 2oiz_A 54 -HVQV--SNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKR--------------------------- 103 (361)
T ss_dssp -EEEE--CTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTB---------------------------
T ss_pred -ceEE--CCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccc---------------------------
Confidence 7888 79999999876 3678999999887765544321100
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeee-eecCCCc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMKPSN 262 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~~~~ 262 (457)
..+......++++|+|++|+++ . ++.|.+||+. .++.+.. +...
T Consensus 104 ----------------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~-~~~~~~~~i~~~--- 151 (361)
T 2oiz_A 104 ----------------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVA-KGDYVEDVTAAA--- 151 (361)
T ss_dssp ----------------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETT-TTEEEEEEGGGT---
T ss_pred ----------------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEECC-CCcEEEEEecCC---
Confidence 1123456689999999999887 3 6899999999 4554443 3211
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC-Ceeeccc--ccccccccccc-------Cc-----------cc
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHS--ARILRDAAESH-------GS-----------KS 321 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~--~~~~~~~~~~~-------~~-----------~~ 321 (457)
....+.+.|++...+++.+.||.+.+|++.. ++..... ...+.. ...+ .. ..
T Consensus 152 ------~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~v~ 224 (361)
T 2oiz_A 152 ------GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV-KDDPIFIAPALDKDKAHFVSYYGNVY 224 (361)
T ss_dssp ------TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT-TTSCBCSCCEECSSEEEEEBTTSEEE
T ss_pred ------CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC-CCCceEEEecccCCEEEEEeCCCeEE
Confidence 1122345555434555556666666666543 2211000 000000 0000 00 00
Q ss_pred -------------cee------cc----ccceEEEEEccCCCeEEEEe------------cCcEEEEeccCCCCceeEee
Q 012721 322 -------------FFT------EI----IASISDIKFANDGQHLLSRD------------YMNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 322 -------------~~~------~h----~~~v~~~~~s~~g~~l~s~~------------~~~i~~wd~~~~~~~~~~~~ 366 (457)
.+. .+ ......++|+|+++.++.+. .+.|.+||+.+ .+.+..+.
T Consensus 225 v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t-~~~v~~i~ 303 (361)
T 2oiz_A 225 SADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKT-KQRVARIP 303 (361)
T ss_dssp EEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTT-TEEEEEEE
T ss_pred EEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCC-CcEEEEEe
Confidence 000 00 01111268899988777542 14799999986 78888887
Q ss_pred eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCC-ceeeEEecCCCcceeeeeccCCc
Q 012721 367 IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGS-AGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
.+. . ..++|+|||++|++++. +.|.+||..+++ +....+..+......++++|+|.
T Consensus 304 ~~~-p----------------~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 304 GRD-A----------------LSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp CTT-C----------------CEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred cCC-e----------------eEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 766 3 58999999999998887 999999999872 23344456677778899999975
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=3.1e-16 Score=143.90 Aligned_cols=236 Identities=10% Similarity=0.016 Sum_probs=152.0
Q ss_pred cCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccC
Q 012721 124 APNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGN 203 (457)
Q Consensus 124 s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 203 (457)
++++.++++++.++.|.+||..+++....+..
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------------------------------------ 39 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVM------------------------------------------------ 39 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETTTTEEEEEEEC------------------------------------------------
T ss_pred cCCCEEEEEeCCCCeEEEEECCCCcEEEEEec------------------------------------------------
Confidence 56788899999999999999998876544321
Q ss_pred ccccccceeeccCCCCCeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc
Q 012721 204 SVHARCQKVYPHAHDFNINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (457)
Q Consensus 204 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 281 (457)
+....+..++|+|+++.++ ++ .++.|.+||+. .++....+..... -......+..++|+|+| +
T Consensus 40 ------------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~-t~~~~~~~~~~~~-~~~~~~~~~~~~~spdg-~ 104 (349)
T 1jmx_B 40 ------------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD-TCKNTFHANLSSV-PGEVGRSMYSFAISPDG-K 104 (349)
T ss_dssp ------------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT-TTEEEEEEESCCS-TTEEEECSSCEEECTTS-S
T ss_pred ------------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCC-CCcEEEEEEcccc-cccccccccceEECCCC-C
Confidence 1112466899999998665 45 78999999998 4555444321100 00002336789999999 8
Q ss_pred EEEEEccC------------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721 282 LLAYSSSR------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349 (457)
Q Consensus 282 ~l~~~~~d------------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~ 349 (457)
+|++++.+ +.|.+||+.+++.. ..... ..+...+.+++|+|+|+ +++++ +.
T Consensus 105 ~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~-----------~~~~~~~~~~~~s~dg~-l~~~~-~~ 167 (349)
T 1jmx_B 105 EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA----KPVRT-----------FPMPRQVYLMRAADDGS-LYVAG-PD 167 (349)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB----CCSEE-----------EECCSSCCCEEECTTSC-EEEES-SS
T ss_pred EEEEEcccccccccccccCCCeEEEEECCCcccc----ceeee-----------ccCCCcccceeECCCCc-EEEcc-Cc
Confidence 88888765 89999999875422 11111 11123578899999999 55443 45
Q ss_pred EEEEeccCCCCceeEeeeccccccc--------------------c---ccccC---------------------CCC--
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPK--------------------L---CDLYN---------------------NDS-- 383 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~--------------------~---~~~~~---------------------~~~-- 383 (457)
|++||+.+ ++....+..+...... . ..+.. ...
T Consensus 168 i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (349)
T 1jmx_B 168 IYKMDVKT-GKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTH 246 (349)
T ss_dssp EEEECTTT-CCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEE
T ss_pred EEEEeCCC-CceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEE
Confidence 99999975 6655555433200000 0 00000 000
Q ss_pred -------ccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 384 -------IFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 384 -------~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
-.....++|+| |+++|+++ ++.|++||+.++ +....+.. ...+..++|+|++.....
T Consensus 247 ~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~-~~~~~~~~-~~~~~~~~~s~dg~~l~~ 311 (349)
T 1jmx_B 247 TQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR-KLIKAANL-DHTYYCVAFDKKGDKLYL 311 (349)
T ss_dssp EEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTT-EEEEEEEC-SSCCCEEEECSSSSCEEE
T ss_pred ecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccC-eEEEEEcC-CCCccceEECCCCCEEEE
Confidence 00124678899 99999988 889999999988 44455543 345678999999876554
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=1.7e-16 Score=160.75 Aligned_cols=241 Identities=11% Similarity=0.092 Sum_probs=150.4
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
...++.| ++++.+++++ |++|++||+.+++...++.....
T Consensus 18 ~~~~~~w--~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~------------------------------------ 57 (740)
T 4a5s_A 18 KLYSLRW--ISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTF------------------------------------ 57 (740)
T ss_dssp CCCCEEE--CSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTT------------------------------------
T ss_pred cccccEE--CCCCcEEEEc--CCcEEEEECCCCceEEEEechhh------------------------------------
Confidence 4567999 7899888876 99999999999876544321100
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC---------CeEEEEEcCCCcceeeeeecCCCccc
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
..+......++|+|||++|+.+ .+ +.+++||+. .++... +.
T Consensus 58 --------------------~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~-~~~~~~--------l~ 108 (740)
T 4a5s_A 58 --------------------DEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN-KRQLIT--------EE 108 (740)
T ss_dssp --------------------TTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT-TTEECC--------SS
T ss_pred --------------------hhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECC-CCcEEE--------cc
Confidence 1112233458899999999988 54 667899998 555432 45
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc---------cceEEEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---------ASISDIKF 335 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~ 335 (457)
.+...+..++|+||| +.||.+ .++.|++||+.+++.. ++... ......+.++. +....+.|
T Consensus 109 ~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~~~~----~lt~~----g~~~~~~~g~~~~v~~ee~~~~~~~~~w 178 (740)
T 4a5s_A 109 RIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNLPSY----RITWT----GKEDIIYNGITDWVYEEEVFSAYSALWW 178 (740)
T ss_dssp CCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTSCCE----ECCSC----CBTTTEEESBCCHHHHHHTSSSSBCEEE
T ss_pred cCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCCceE----EEcCC----CCccceecCcccccccchhcCCCcceEE
Confidence 567789999999999 888887 5789999999887532 11110 00001122222 22345899
Q ss_pred ccCCCeEEEEe-c-CcEE-----------------------------------EEeccC---CCC-ceeEeeeccccccc
Q 012721 336 ANDGQHLLSRD-Y-MNLK-----------------------------------LWDIRM---DST-PVATFKIHEHLRPK 374 (457)
Q Consensus 336 s~~g~~l~s~~-~-~~i~-----------------------------------~wd~~~---~~~-~~~~~~~~~~~~~~ 374 (457)
||||++||..+ | ..+. +||+.. ... ....+.....
T Consensus 179 SpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~---- 254 (740)
T 4a5s_A 179 SPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS---- 254 (740)
T ss_dssp CTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH----
T ss_pred CCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc----
Confidence 99999999763 2 4344 444432 100 1111111000
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeC----CCcEEEEecCCCC-------ceeeEEecCCCcce-----eeeeccC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSY----SNLLRIFSHGVGS-------AGGITVEAGKNENR-----KPILQAA 438 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----dg~i~iw~~~~~~-------~~~~~~~~~~~~v~-----~~~~~p~ 438 (457)
+. ....-+..++|+|||+.++.... +..|++||+.+++ .....-++|...+. .+.|+||
T Consensus 255 ---~~--~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 255 ---ML--IGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp ---HH--TSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred ---CC--CCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 00 00011268899999997765543 3479999999984 11222266776665 7899999
Q ss_pred Cccee
Q 012721 439 PRARR 443 (457)
Q Consensus 439 ~~~~~ 443 (457)
+....
T Consensus 330 G~~l~ 334 (740)
T 4a5s_A 330 GNSFY 334 (740)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 98654
No 169
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.74 E-value=3e-15 Score=136.22 Aligned_cols=260 Identities=11% Similarity=0.074 Sum_probs=171.7
Q ss_pred CCceEEEEECCCCCEEEEEeCC------------------------CeEEEEEecCCccCCCcccchhhhhhcccccccC
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRG------------------------GRVILFETVGGKNTPNQHISRSELEKQMDFTSTS 87 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~d------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
.+.|.+++++|+|+++++...+ ++|.+||..+++.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~--------------------- 81 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI--------------------- 81 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE---------------------
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE---------------------
Confidence 4689999999999999988777 3688888766553
Q ss_pred CCccceeeeec-cCCccccccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccc-eeEEEeecCCCceeeee
Q 012721 88 HPEYRYKTEFQ-SHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQK-VKKIKEMDHFPFVSSEN 165 (457)
Q Consensus 88 ~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~~~ 165 (457)
+..+. ++- .....+++ +++|+++++...++.|++|+..... ....+......
T Consensus 82 ------~~~~~~~~~------------~~p~gia~--d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~------ 135 (329)
T 3fvz_A 82 ------LQSSGKNLF------------YLPHGLSI--DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQP------ 135 (329)
T ss_dssp ------EEEECTTTC------------SSEEEEEE--CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBC------
T ss_pred ------EeccCCCcc------------CCceEEEE--CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCC------
Confidence 12222 222 46889999 7899888888889999999976542 22211100000
Q ss_pred eccccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe--CCCeEE
Q 012721 166 TLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA--DDLRIN 242 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~--~d~~i~ 242 (457)
+ ...++......++++| ++.++++. .++.|+
T Consensus 136 -----g-----------------------------------------~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~ 169 (329)
T 3fvz_A 136 -----G-----------------------------------------SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV 169 (329)
T ss_dssp -----C-----------------------------------------CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred -----C-----------------------------------------CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence 0 0023445678999999 78888876 489999
Q ss_pred EEEcCCCcceeeeeecCCC---cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCc
Q 012721 243 LWNLEISDQCFNIVDMKPS---NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGS 319 (457)
Q Consensus 243 iwd~~~~~~~~~~~~~~~~---~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~ 319 (457)
+||.. +.....+..... ...++......++++|++..++++...++.|++||..+++.. ..+..
T Consensus 170 ~~~~~--g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~----~~~~~------- 236 (329)
T 3fvz_A 170 QFSPS--GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFV----REIKH------- 236 (329)
T ss_dssp EECTT--SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EEECC-------
T ss_pred EEcCC--CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEE----EEEec-------
Confidence 99955 444444311100 001233458999999983288888889999999999866543 22221
Q ss_pred ccceeccccceEEEEEccCCCeEEEE-------ec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEE
Q 012721 320 KSFFTEIIASISDIKFANDGQHLLSR-------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECS 391 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~~g~~l~s~-------~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 391 (457)
..+...+..++|+| +..+++. .. ..|++||... ++.+..+....... .....++
T Consensus 237 ----~~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~-g~~~~~~~~~~~~~------------~~p~~ia 298 (329)
T 3fvz_A 237 ----ASFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSS-GEIIDVFKPVRKHF------------DMPHDIV 298 (329)
T ss_dssp ----TTTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTT-CCEEEEECCSSSCC------------SSEEEEE
T ss_pred ----cccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCC-CeEEEEEcCCCCcc------------CCeeEEE
Confidence 12235678899999 4333332 22 5899999875 77777664211110 0115899
Q ss_pred EcCCCcEEEEEeCCCcEEEEecCC
Q 012721 392 VSGDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 392 ~s~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
++|+|.++++...+++|++|++..
T Consensus 299 ~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 299 ASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ECCCCCEEEEECCCCEEEEEeCCc
Confidence 999998888888899999999864
No 170
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=7.2e-16 Score=144.15 Aligned_cols=298 Identities=11% Similarity=0.030 Sum_probs=172.0
Q ss_pred cCCceEEEEECCCCCEEEEEeCC---CeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRG---GRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYL 107 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 107 (457)
|...+.+++|||||++||..... ..|.+|++.+++.. .+..+..
T Consensus 34 ~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~----------------------------~l~~~~~----- 80 (396)
T 3c5m_A 34 HRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAV----------------------------QLTEGKG----- 80 (396)
T ss_dssp ECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEE----------------------------ECCCSSC-----
T ss_pred cceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEE----------------------------EeecCCC-----
Confidence 33447889999999998876543 36778887766531 1222220
Q ss_pred ccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC-------
Q 012721 108 KSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP------- 180 (457)
Q Consensus 108 ~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 180 (457)
.....+.| +|+|+.|+.++.++.|.+|++.+++...+...... +.+....++......
T Consensus 81 ------~~~~~~~~--spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~-------~~~~g~~l~~~~~~~~~~~~~~ 145 (396)
T 3c5m_A 81 ------DNTFGGFI--STDERAFFYVKNELNLMKVDLETLEEQVIYTVDEE-------WKGYGTWVANSDCTKLVGIEIL 145 (396)
T ss_dssp ------BCTTTCEE--CTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTT-------EEEEEEEEECTTSSEEEEEEEE
T ss_pred ------CccccceE--CCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccc-------cCCCCCEEEeccCCcccccccc
Confidence 11223678 79999999999999999999998876655443221 111111111110000
Q ss_pred CceeccCCcc---------ccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-CC------CeEEE
Q 012721 181 SFAHGYHLEW---------TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-DD------LRINL 243 (457)
Q Consensus 181 ~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~d------~~i~i 243 (457)
...+.+++.. .....+.+||+.... .... ..+...+..+.|+| ++..|+.. .+ ..|.+
T Consensus 146 ~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~---~~~~--~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~ 220 (396)
T 3c5m_A 146 KRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE---LEVI--HQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWL 220 (396)
T ss_dssp GGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC---EEEE--EEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEE
T ss_pred ccccCCCCcceeeeeeccCCCcceEEEEECCCCc---EEee--ccCCcccccceECCCCCCEEEEEecCCCCCCCceEEE
Confidence 0123334432 123367788876422 2221 24566788999999 78877664 32 46888
Q ss_pred EEcCCCcceeeeeecCCCcccCC-CCceEEEEEecCCccEEEEEccC-----CeEEEEEccCCeeecccccccccccccc
Q 012721 244 WNLEISDQCFNIVDMKPSNMDDL-TEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDMRQSALCDHSARILRDAAESH 317 (457)
Q Consensus 244 wd~~~~~~~~~~~~~~~~~~~~~-~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~~ 317 (457)
||+. .+....+ .... ...+..++|+|+| +.|+.++.+ +.|.+||+.+++.. .+...
T Consensus 221 ~d~~-~~~~~~l-------~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~----- 282 (396)
T 3c5m_A 221 VNED-GSNVRKI-------KEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLENE----EVMVM----- 282 (396)
T ss_dssp EETT-SCCCEES-------SCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCCEE----EEEEC-----
T ss_pred EECC-CCceeEe-------eccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCCeE----EeeeC-----
Confidence 8887 3333222 1111 2357889999999 766666543 45999999876532 11111
Q ss_pred CcccceeccccceEEEEEcc-CCCeEEEEe-----------------cCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721 318 GSKSFFTEIIASISDIKFAN-DGQHLLSRD-----------------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (457)
Q Consensus 318 ~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~-----------------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (457)
.... +.|+| +|++++.+. +..|++||+.. ++. ..+..+...... +
T Consensus 283 ----------~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~-~~~-~~l~~~~~~~~~----~ 345 (396)
T 3c5m_A 283 ----------PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKA-KSA-QKLCKHSTSWDV----L 345 (396)
T ss_dssp ----------CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTT-TBC-CEEEECCCCCCC----B
T ss_pred ----------CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEeccc-Cce-EEccCCCCcccc----c
Confidence 1123 88999 999888642 27899999874 443 344444321000 0
Q ss_pred CCCCccccceEEEcCCCcEEEEEeC-CCcEEEE--ecCCC
Q 012721 380 NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIF--SHGVG 416 (457)
Q Consensus 380 ~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw--~~~~~ 416 (457)
..+....+..++|+|||+.|+.++. ++...|| ++.++
T Consensus 346 ~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 346 DGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp TTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred cccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 0000000146899999998887765 4554454 55555
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.72 E-value=5.6e-15 Score=134.79 Aligned_cols=272 Identities=13% Similarity=0.080 Sum_probs=178.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...|.+++|++++..++..+.++.++.|... ....+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~---------- 44 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITAE------------------------------PWLEISKKG---------- 44 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEECE------------------------------EEEEEESSC----------
T ss_pred ccccceeeecCCccceeEEeecccCcccccc------------------------------eeEEEeccC----------
Confidence 3457889999998888777778889998321 122344444
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..+.+++| ++++.+++++..++.|.+||..+++.....
T Consensus 45 --~~~~~~~~--~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~-------------------------------------- 82 (333)
T 2dg1_A 45 --LQLEGLNF--DRQGQLFLLDVFEGNIFKINPETKEIKRPF-------------------------------------- 82 (333)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTCEEEEECTTTCCEEEEE--------------------------------------
T ss_pred --ccccCcEE--CCCCCEEEEECCCCEEEEEeCCCCcEEEEe--------------------------------------
Confidence 55789999 688887778888999999998877654321
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC----CeEEEEEcCCCcceeeeeecCCCcccCC
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD----LRINLWNLEISDQCFNIVDMKPSNMDDL 266 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 266 (457)
..+...+.+++++|+++++++. .+ +.|.+||.+ .+.....+. ...+
T Consensus 83 -----------------------~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~-~~~~~~~~~-----~~~~ 133 (333)
T 2dg1_A 83 -----------------------VSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN-GDNLQDIIE-----DLST 133 (333)
T ss_dssp -----------------------ECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT-SCSCEEEEC-----SSSS
T ss_pred -----------------------eCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCC-CCEEEEEEc-----cCcc
Confidence 1234578999999999988887 65 699999988 443332221 0123
Q ss_pred CCceEEEEEecCCccEEEEEcc------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 267 TEVITSAEFHPIYCNLLAYSSS------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 267 ~~~i~~v~~~p~~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
...+.+++++|+| +++++... .+.|..||..+++.. .... +...+..++|+|+|+
T Consensus 134 ~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~~--------------~~~~~~~i~~~~dg~ 194 (333)
T 2dg1_A 134 AYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVT----PIIQ--------------NISVANGIALSTDEK 194 (333)
T ss_dssp CCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEE----EEEE--------------EESSEEEEEECTTSS
T ss_pred CCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEE----Eeec--------------CCCcccceEECCCCC
Confidence 4578999999999 87776653 355666665543321 1111 123578899999998
Q ss_pred eEEEE-e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 341 HLLSR-D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 341 ~l~s~-~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
+|+.+ + ++.|.+||+...+..+..+...... .+. .......++++++|+++++...++.|.+||.. + .
T Consensus 195 ~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~-----~~~---~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g-~ 264 (333)
T 2dg1_A 195 VLWVTETTANRLHRIALEDDGVTIQPFGATIPY-----YFT---GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G-Y 264 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE-----ECC---SSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-S-C
T ss_pred EEEEEeCCCCeEEEEEecCCCcCcccccceEEE-----ecC---CCCCCCceEECCCCCEEEEEcCCCEEEEECCC-C-C
Confidence 76654 3 3899999996434433322100000 000 00011479999999988888888999999984 4 3
Q ss_pred eeeEEecCCC------cceeeeeccCCccee
Q 012721 419 GGITVEAGKN------ENRKPILQAAPRARR 443 (457)
Q Consensus 419 ~~~~~~~~~~------~v~~~~~~p~~~~~~ 443 (457)
....+..+.. .+..++|+|++....
T Consensus 265 ~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 265 PIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp EEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred EEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence 4455544432 688999999975443
No 172
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.71 E-value=7.1e-16 Score=143.89 Aligned_cols=253 Identities=13% Similarity=0.077 Sum_probs=148.5
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...+..++|+|||+.|+.++.++.|++||+.+++.. ..+..+.
T Consensus 80 ~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~---------------------------~~~~~~~---------- 122 (388)
T 3pe7_A 80 GDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEEN---------------------------VVYQVPA---------- 122 (388)
T ss_dssp CBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEE---------------------------EEEECCT----------
T ss_pred CCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcce---------------------------eeeechh----------
Confidence 344456789999999999999999999999887642 1223333
Q ss_pred ccCcEEEEEEEecCCCCEEEEee----------------------CCCeEEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILST----------------------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s----------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (457)
..+....|..++++.+++... .+..|.+||+.+++...+
T Consensus 123 --~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l----------------- 183 (388)
T 3pe7_A 123 --EWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVI----------------- 183 (388)
T ss_dssp --TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEE-----------------
T ss_pred --hcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEe-----------------
Confidence 334445554478888776421 223455555544433222
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCC-CCCEEEEe-C------CCeE
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNS-DCETFVSA-D------DLRI 241 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~-~------d~~i 241 (457)
..+...+..++|+| +|+.|+.+ . ...|
T Consensus 184 ---------------------------------------------~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l 218 (388)
T 3pe7_A 184 ---------------------------------------------LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARM 218 (388)
T ss_dssp ---------------------------------------------EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSE
T ss_pred ---------------------------------------------ecCCccccccEECCCCCCEEEEEEecCCCCCcceE
Confidence 23445688999999 99988876 4 3378
Q ss_pred EEEEcCCCcceeeeeecCCCcccCCC--CceEEEEEecCCccEEEEEc-cCC----eEEEEEccCCeeeccccccccccc
Q 012721 242 NLWNLEISDQCFNIVDMKPSNMDDLT--EVITSAEFHPIYCNLLAYSS-SRG----FVRLVDMRQSALCDHSARILRDAA 314 (457)
Q Consensus 242 ~iwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~v~~~p~~~~~l~~~~-~dg----~i~lwd~~~~~~~~~~~~~~~~~~ 314 (457)
.++|.. .+.... +..+. ..+..++|+|+| +.|+..+ .++ .|.+||+.+++.. .+...
T Consensus 219 ~~~d~~-~~~~~~--------l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~~~----~l~~~-- 282 (388)
T 3pe7_A 219 WLINED-GTNMRK--------VKTHAEGESCTHEFWVPDG-SALVYVSYLKGSPDRFIYSADPETLENR----QLTSM-- 282 (388)
T ss_dssp EEEETT-SCCCEE--------SCCCCTTEEEEEEEECTTS-SCEEEEEEETTCCCEEEEEECTTTCCEE----EEEEE--
T ss_pred EEEeCC-CCceEE--------eeeCCCCcccccceECCCC-CEEEEEecCCCCCcceEEEEecCCCceE----EEEcC--
Confidence 888876 333332 22233 357788999999 7565443 222 4999999987532 11111
Q ss_pred cccCcccceeccc-cceEEEEEccCCCeEEEE---------e-cCcEEEEeccCCCCceeEeeeccccccccccccCCCC
Q 012721 315 ESHGSKSFFTEII-ASISDIKFANDGQHLLSR---------D-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDS 383 (457)
Q Consensus 315 ~~~~~~~~~~~h~-~~v~~~~~s~~g~~l~s~---------~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (457)
+. ..|. .....+.|+|||+.|+.. . +..|++||+.. + .+..+..+......+ ..+.
T Consensus 283 --~~-----~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~-~-~~~~l~~~~~~~~~~----~~~~ 349 (388)
T 3pe7_A 283 --PA-----CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKN-G-TQHRVARHDTSWKVF----EGDR 349 (388)
T ss_dssp --CC-----EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTT-T-EEEEEEECCCCCCCB----TTBS
T ss_pred --CC-----ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccC-C-ceEEeccccCccccc----cccc
Confidence 00 0000 001123799999988842 2 37899999974 3 344555444310000 0000
Q ss_pred ccccceEEEcCCCcEEEEEe-CCCcEEEEecC
Q 012721 384 IFDKFECSVSGDGLHFATGS-YSNLLRIFSHG 414 (457)
Q Consensus 384 ~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~ 414 (457)
...+..++|+|||+.|+..+ .+|...||.+.
T Consensus 350 ~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 350 QVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 00115789999999888766 46766666554
No 173
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=2.8e-15 Score=150.15 Aligned_cols=177 Identities=14% Similarity=0.006 Sum_probs=105.0
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CC--------CeEEEEEcCCCc---ceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 217 HDFNINSISNNSDCETFVSA-DD--------LRINLWNLEISD---QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d--------~~i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
+...+..++|+|||++|+.+ .+ ..|++||+...+ ....+ ..++...+..++|+|+| ++++
T Consensus 186 ~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l-------~~~~~~~~~~~~~spdg-~l~~ 257 (662)
T 3azo_A 186 AHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL-------LGGPEEAIAQAEWAPDG-SLIV 257 (662)
T ss_dssp CSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE-------EEETTBCEEEEEECTTS-CEEE
T ss_pred CCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe-------CCCCCceEcceEECCCC-eEEE
Confidence 34567788999999999876 44 379999998323 33332 23456788999999999 7888
Q ss_pred EEccCC--eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCce
Q 012721 285 YSSSRG--FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPV 362 (457)
Q Consensus 285 ~~~~dg--~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~ 362 (457)
+++.++ .|.+||+.+++.. .+...+..... ..-...+..++|+|+++++++++.+.++||.++..+..+
T Consensus 258 ~~~~~~~~~l~~~~~~~~~~~----~l~~~~~~~~~-----p~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 328 (662)
T 3azo_A 258 ATDRTGWWNLHRVDPATGAAT----QLCRREEEFAG-----PLWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGEL 328 (662)
T ss_dssp EECTTSSCEEEEECTTTCCEE----ESSCCSSBSSC-----CCCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEE
T ss_pred EECCCCCeEEEEEECCCCcee----ecccccccccC-----ccccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcE
Confidence 888888 6666666555432 12111000000 000011456899999999888755888888554333446
Q ss_pred eEeeeccccccccccccCCCCccccceE-EEcCCCcEEEEEeCCC--cEEEEecCCCCceeeEEecC
Q 012721 363 ATFKIHEHLRPKLCDLYNNDSIFDKFEC-SVSGDGLHFATGSYSN--LLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~d~~~l~s~~~dg--~i~iw~~~~~~~~~~~~~~~ 426 (457)
..+..+...+ ..+ +++++.-++++++.+. .|++||+.++ +.......+
T Consensus 329 ~~l~~~~~~~---------------~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g-~~~~l~~~~ 379 (662)
T 3azo_A 329 VDAAGPWTEW---------------AATLTVSGTRAVGVAASPRTAYEVVELDTVTG-RARTIGARH 379 (662)
T ss_dssp EECCSSCCEE---------------EEEEEEETTEEEEEEEETTEEEEEEEEETTTC-CEEEEESCC
T ss_pred EEecCCCCeE---------------EEEEecCCCEEEEEEcCCCCCCEEEEEECCCC-ceEEeecCC
Confidence 6666554432 234 3333333344455554 4666677677 333333344
No 174
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.68 E-value=2.6e-14 Score=128.07 Aligned_cols=240 Identities=8% Similarity=-0.011 Sum_probs=166.5
Q ss_pred cCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 31 DVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 31 h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
+.....+++|+|+|+ +++++..++.|..|+..++ . ..+..+.
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~----------------------------~~~~~~~-------- 68 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L----------------------------SPEMHPS-------- 68 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E----------------------------EEEESSC--------
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e----------------------------EEEECCC--------
Confidence 566788999999998 7888888999999998765 2 2333344
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
..+.++++ +++|.++++...++.|.+||..+++.........
T Consensus 69 ----~~~~~l~~--~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~-------------------------------- 110 (296)
T 3e5z_A 69 ----HHQNGHCL--NKQGHLIACSHGLRRLERQREPGGEWESIADSFE-------------------------------- 110 (296)
T ss_dssp ----SSEEEEEE--CTTCCEEEEETTTTEEEEECSTTCCEEEEECEET--------------------------------
T ss_pred ----CCcceeeE--CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccC--------------------------------
Confidence 56899999 7899887777777899999998776543321100
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE----e-C-------------CCeEEEEEcCCCcc
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEISDQ 251 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~~~~ 251 (457)
......+..++++|+|+++++ | . .+.|..++.. +.
T Consensus 111 -------------------------~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~ 163 (296)
T 3e5z_A 111 -------------------------GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GT 163 (296)
T ss_dssp -------------------------TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SC
T ss_pred -------------------------CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CC
Confidence 111234678999999998887 3 1 2455555544 33
Q ss_pred eeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc-CCee-eccccccccccccccCcccceeccccc
Q 012721 252 CFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR-QSAL-CDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
... +..+......++|+|++ +.+++.+.++.|.+||+. .++. .. ...+ . .+...
T Consensus 164 ~~~--------~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~-~------------~~~~~ 219 (296)
T 3e5z_A 164 LSA--------PIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGETEYQ--GVHF-T------------VEPGK 219 (296)
T ss_dssp EEE--------EECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCEEEE--EEEE-C------------CSSSC
T ss_pred EEE--------eecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcCcCC--CeEe-e------------CCCCC
Confidence 222 23345567899999999 777778888999999987 3332 10 0122 1 12245
Q ss_pred eEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEE-cCCCcEEEEEeCCCcE
Q 012721 330 ISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSV-SGDGLHFATGSYSNLL 408 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~s~~~dg~i 408 (457)
+..++++++|++.++. ++.|.+||.. ++.+..+..+.. + .+++| +|+++.|++++.++ +
T Consensus 220 p~~i~~d~~G~l~v~~-~~~v~~~~~~--g~~~~~~~~~~~-~---------------~~~~f~~~d~~~L~v~t~~~-l 279 (296)
T 3e5z_A 220 TDGLRVDAGGLIWASA-GDGVHVLTPD--GDELGRVLTPQT-T---------------SNLCFGGPEGRTLYMTVSTE-F 279 (296)
T ss_dssp CCSEEEBTTSCEEEEE-TTEEEEECTT--SCEEEEEECSSC-C---------------CEEEEESTTSCEEEEEETTE-E
T ss_pred CCeEEECCCCCEEEEc-CCeEEEECCC--CCEEEEEECCCC-c---------------eeEEEECCCCCEEEEEcCCe-E
Confidence 6789999999977777 7899999985 677777766654 3 58899 58999898888764 4
Q ss_pred EEEecCCC
Q 012721 409 RIFSHGVG 416 (457)
Q Consensus 409 ~iw~~~~~ 416 (457)
.-++.++.
T Consensus 280 ~~~~~~~~ 287 (296)
T 3e5z_A 280 WSIETNVR 287 (296)
T ss_dssp EEEECSCC
T ss_pred EEEEcccc
Confidence 45555554
No 175
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.66 E-value=5.1e-14 Score=141.93 Aligned_cols=248 Identities=9% Similarity=0.060 Sum_probs=157.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCC-----eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGG-----RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
|...+..++|||||++||.+..++ .|++||+.+++.. . ..+..
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~-------------------------~-~~~~~------ 170 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL-------------------------P-DVLER------ 170 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE-------------------------E-EEEEE------
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------------------------c-ccccC------
Confidence 344689999999999999775433 8999999887642 0 01111
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCe----------------EEEEEecccceeEEEeecCCCceeeeeeccc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT----------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLA 169 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~----------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (457)
..+..++| +|||+.|+.++.++. |++|++.++.......
T Consensus 171 --------~~~~~~~w--spDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v--------------- 225 (710)
T 2xdw_A 171 --------VKFSCMAW--THDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILC--------------- 225 (710)
T ss_dssp --------ECSCCEEE--CTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEE---------------
T ss_pred --------cccceEEE--EeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEE---------------
Confidence 22567899 789999999887765 6666665543211000
Q ss_pred cccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-----CCeEEE
Q 012721 170 EKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-----DLRINL 243 (457)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-----d~~i~i 243 (457)
.. ...|...+..+.|+|||++|+.+ . +..|++
T Consensus 226 -----------------------------------------~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 226 -----------------------------------------AE-FPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp -----------------------------------------EC-CTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred -----------------------------------------ec-cCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 00 02345567889999999998875 3 678999
Q ss_pred EEcCC------CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc----CCeEEEEEccCCeeecccccccccc
Q 012721 244 WNLEI------SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS----RGFVRLVDMRQSALCDHSARILRDA 313 (457)
Q Consensus 244 wd~~~------~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~----dg~i~lwd~~~~~~~~~~~~~~~~~ 313 (457)
||+.. ....... +..+...+.. .|+|+| ..|+..+. .+.|.+||+.++... ..+.
T Consensus 264 ~d~~~~~~~~~~~~~~~~-------l~~~~~~~~~-~~s~dg-~~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~---- 328 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVK-------LIDNFEGEYD-YVTNEG-TVFTFKTNRHSPNYRLINIDFTDPEES--KWKV---- 328 (710)
T ss_dssp EEGGGSSSSSCSSCCCEE-------EECSSSSCEE-EEEEET-TEEEEEECTTCTTCEEEEEETTSCCGG--GCEE----
T ss_pred EECcccccccCCccceEE-------eeCCCCcEEE-EEeccC-CEEEEEECCCCCCCEEEEEeCCCCCcc--ccee----
Confidence 99984 2112222 2334444444 488888 65555443 346999998775310 0011
Q ss_pred ccccCcccceeccc--cceEEEEEccCCCeEEEEec-C--cEEEEeccCCCCceeEeeeccccccccccccCCCCccccc
Q 012721 314 AESHGSKSFFTEII--ASISDIKFANDGQHLLSRDY-M--NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKF 388 (457)
Q Consensus 314 ~~~~~~~~~~~~h~--~~v~~~~~s~~g~~l~s~~~-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 388 (457)
+..|. ..+..+.|++++.++++..+ + .|.+||+.. ++.+..+..+...+ .
T Consensus 329 ---------l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~-g~~~~~l~~~~~~v---------------~ 383 (710)
T 2xdw_A 329 ---------LVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLAT-GALLKIFPLEVGSV---------------V 383 (710)
T ss_dssp ---------EECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTT-CCEEEEECCCSSEE---------------E
T ss_pred ---------ccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCC-CCEEEecCCCCceE---------------E
Confidence 11122 25778899877777777653 5 466677643 66666666554332 4
Q ss_pred eEEEcCCCcEEEEE-e---CCCcEEEEecCCCC
Q 012721 389 ECSVSGDGLHFATG-S---YSNLLRIFSHGVGS 417 (457)
Q Consensus 389 ~~~~s~d~~~l~s~-~---~dg~i~iw~~~~~~ 417 (457)
.++++|++..|+.. + ..++|++||+.+++
T Consensus 384 ~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 384 GYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 68889998766533 2 35789999999884
No 176
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.65 E-value=1.9e-14 Score=144.68 Aligned_cols=249 Identities=10% Similarity=-0.003 Sum_probs=154.5
Q ss_pred cCCceEEEEECCCCCEEE-----EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 31 DVDIVSAIEFDKTGDYLA-----VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~la-----tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
|...+.+++|||||++|| .|+.+..|++||+.+++.. . ..+...
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~---------------------------~--~~~~~~-- 167 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS---------------------------K--VDVIEG-- 167 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC---------------------------S--SCCBSC--
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc---------------------------C--CcccCc--
Confidence 445799999999999998 4445578999999988641 0 111100
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCe-------------EEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
.....++| ++||+.|+.++.|.. |++|++.++.......+.
T Consensus 168 --------~~~~~~~w--spDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~---------------- 221 (695)
T 2bkl_A 168 --------GKYATPKW--TPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHE---------------- 221 (695)
T ss_dssp --------CTTCCCEE--CTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEEC----------------
T ss_pred --------ccccceEE--ecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEe----------------
Confidence 11256889 799999999988765 788877665421110000
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC----eEEEEEcC
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL----RINLWNLE 247 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~----~i~iwd~~ 247 (457)
...+...+..+.|+|||++|+.+ .++ .|++|+..
T Consensus 222 -----------------------------------------~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 222 -----------------------------------------RTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp -----------------------------------------CCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred -----------------------------------------cCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 03455678899999999998886 554 67777654
Q ss_pred CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc---cCCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS---SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
.+....+ ..+...+....+ ++| .+++.+. .++.|.+||+.+++... ...++..
T Consensus 261 -~~~~~~l--------~~~~~~~~~~~~-~~g-~l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~------------ 316 (695)
T 2bkl_A 261 -EKDFRLL--------VKGVGAKYEVHA-WKD-RFYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPE------------ 316 (695)
T ss_dssp -CSSCEEE--------EECSSCCEEEEE-ETT-EEEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECC------------
T ss_pred -CCceEEe--------ecCCCceEEEEe-cCC-cEEEEECCCCCCCEEEEEeCCCCCccC-CeEEecC------------
Confidence 2333322 234444555556 777 5444444 25889999987753100 0011111
Q ss_pred ccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeec-cccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 325 EIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
.....+..++|+ ++.++++.. ++..++|.+...++....+..+ ...+ ..++++||+..|+..
T Consensus 317 ~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v---------------~~~~~s~d~~~l~~~ 380 (695)
T 2bkl_A 317 DSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAA---------------SNLMGLEDLDDAYYV 380 (695)
T ss_dssp CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEE---------------CCCBSCTTCSEEEEE
T ss_pred CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEE---------------EEeecCCCCCEEEEE
Confidence 002357788888 666777665 4777777665335555555443 2221 467888998777632
Q ss_pred ----eCCCcEEEEecCCCC
Q 012721 403 ----SYSNLLRIFSHGVGS 417 (457)
Q Consensus 403 ----~~dg~i~iw~~~~~~ 417 (457)
...++|++||+.+++
T Consensus 381 ~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 381 FTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp EEETTEEEEEEEEETTTCC
T ss_pred EcCCCCCCEEEEEECCCCc
Confidence 235789999999884
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=2e-12 Score=125.12 Aligned_cols=310 Identities=13% Similarity=0.075 Sum_probs=184.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEec--CCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETV--GGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKS 109 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~ 109 (457)
...+..+.|+|||+++++++.++.|.+||+. +.+ .+.++...
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~---------------------------~v~~i~~G--------- 239 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPT---------------------------TVAEIKIG--------- 239 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCC---------------------------EEEEEECC---------
T ss_pred CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCc---------------------------EeEEEecC---------
Confidence 4467799999999999999999999999985 443 22333322
Q ss_pred ccccCcEEEEEEEec----CCCCEEEEee-CCCeEEEEEecccceeEEEeecC----------CCceeeeeecccccccc
Q 012721 110 LEIEEKINRVRWCAA----PNGSMFILST-NDKTIKLWKVRDQKVKKIKEMDH----------FPFVSSENTLLAEKNFM 174 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s----~~~~~l~s~s-~d~~i~vw~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~ 174 (457)
.....++| + |+|++++++. .+++|.++|..+.+....+.... ...+..+..+......+
T Consensus 240 ----~~P~~ia~--s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~v 313 (567)
T 1qks_A 240 ----SEARSIET--SKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 313 (567)
T ss_dssp ----SEEEEEEE--CCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEE
T ss_pred ----CCCceeEE--ccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEE
Confidence 23578888 6 5998888766 56999999998887776654321 11122222211111000
Q ss_pred ccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcce
Q 012721 175 NEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA--DDLRINLWNLEISDQC 252 (457)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~ 252 (457)
.+ ....+.+.++|........ +.. .........+.|+|++++++++ .++.|.++|+. .++.
T Consensus 314 -----------v~--~~~~g~v~~vd~~~~~~~~-v~~--i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~-t~kl 376 (567)
T 1qks_A 314 -----------VN--VKETGKILLVDYTDLNNLK-TTE--ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTK-EGKL 376 (567)
T ss_dssp -----------EE--ETTTTEEEEEETTCSSEEE-EEE--EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETT-TTEE
T ss_pred -----------EE--ecCCCeEEEEecCCCccce-eee--eeccccccCceECCCCCEEEEEeCCCCeEEEEECC-CCcE
Confidence 00 0123456666654332111 111 1233456788999999998765 78999999999 5666
Q ss_pred eeeeec-CCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEEccCCeeec---cccccccccccccCcccceeccc
Q 012721 253 FNIVDM-KPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVDMRQSALCD---HSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 253 ~~~~~~-~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
...+.+ . ...|.+.-..+ ++|++...++++. .++.|.++|....+... +.++.+.. ..
T Consensus 377 ~~~i~vgg---~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~-------------~g 439 (567)
T 1qks_A 377 VAIEDTGG---QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPA-------------LG 439 (567)
T ss_dssp EEEEECSS---SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEEC-------------SC
T ss_pred EEEEeccC---cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEec-------------CC
Confidence 665544 2 12344322222 6887536666654 56899999988732110 00111111 11
Q ss_pred cceEEEEEccCCCeEEEEe--------cCcEEEEeccCC-----CCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 328 ASISDIKFANDGQHLLSRD--------YMNLKLWDIRMD-----STPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~--------~~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
..-..+..+|+++++.+.. .+.|.++|+.+. .+.+..+...+-. .+ .+.-..+..+.|+|
T Consensus 440 ~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~ 512 (567)
T 1qks_A 440 GGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA-----GI--TEGQPRVVQGEFNK 512 (567)
T ss_dssp SCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH-----TC--CSSCCEEEEEEECT
T ss_pred CCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc-----cc--CCCCcceEeeeECC
Confidence 2224577899999998754 259999999863 2222333211000 00 00000125899999
Q ss_pred CCcEEEEEe-----CCCcEEEEecCCCCceeeEEec
Q 012721 395 DGLHFATGS-----YSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 395 d~~~l~s~~-----~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
+|+++..+. .++.|.|+|.+++ +...++..
T Consensus 513 ~G~~~~~s~~~~~~~~~~i~v~D~~t~-~~~~~i~~ 547 (567)
T 1qks_A 513 DGTEVWFSVWNGKDQESALVVVDDKTL-ELKHVIKD 547 (567)
T ss_dssp TSSEEEEEEECCTTSCCEEEEEETTTT-EEEEEECC
T ss_pred CCCEEEEEeecCCCCCCcEEEEECCCc-eEEEEeCC
Confidence 999877663 3789999999998 55666654
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=5.7e-13 Score=121.38 Aligned_cols=245 Identities=10% Similarity=0.088 Sum_probs=156.1
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
+...+.+++|+++|++++++..++.|.+|+.++++.. .....+.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~---------------------------~~~~~~~--------- 86 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK---------------------------RPFVSHK--------- 86 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE---------------------------EEEECSS---------
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEE---------------------------EEeeCCC---------
Confidence 4567899999999998888888999999998766531 1111233
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCC----CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTND----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..+.++++ ++++.++++...+ +.|.+||..++........
T Consensus 87 ---~~~~~i~~--~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~------------------------------- 130 (333)
T 2dg1_A 87 ---ANPAAIKI--HKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIED------------------------------- 130 (333)
T ss_dssp ---SSEEEEEE--CTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECS-------------------------------
T ss_pred ---CCcceEEE--CCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEcc-------------------------------
Confidence 56999999 7888887777666 6899999877654322110
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C------CCeEEEEEcCCCcceeeeeecC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D------DLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~------d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
..+...+..++++|+++++++. . .+.|..+|.. .++....
T Consensus 131 ----------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~-~~~~~~~---- 177 (333)
T 2dg1_A 131 ----------------------------LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPD-FRTVTPI---- 177 (333)
T ss_dssp ----------------------------SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTT-SCCEEEE----
T ss_pred ----------------------------CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCC-CCEEEEe----
Confidence 1233468899999999888876 3 2556666655 2333222
Q ss_pred CCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEcc
Q 012721 260 PSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN 337 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~ 337 (457)
......+..++|+|++ + ++++.+.++.|.+||+.+ +... ..+.. . ....+.++ ..+..+++++
T Consensus 178 ----~~~~~~~~~i~~~~dg-~~l~v~~~~~~~i~~~d~~~~g~~~----~~~~~-~----~~~~~~~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 178 ----IQNISVANGIALSTDE-KVLWVTETTANRLHRIALEDDGVTI----QPFGA-T----IPYYFTGH-EGPDSCCIDS 242 (333)
T ss_dssp ----EEEESSEEEEEECTTS-SEEEEEEGGGTEEEEEEECTTSSSE----EEEEE-E----EEEECCSS-SEEEEEEEBT
T ss_pred ----ecCCCcccceEECCCC-CEEEEEeCCCCeEEEEEecCCCcCc----ccccc-e----EEEecCCC-CCCCceEECC
Confidence 1122457889999998 6 445556789999999864 2211 00000 0 00000111 3567899999
Q ss_pred CCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC
Q 012721 338 DGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN 406 (457)
Q Consensus 338 ~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg 406 (457)
+|+++++... +.|.+||.. ++.+..+..+..... ....+.+++|+||+..|+.++.++
T Consensus 243 ~G~l~v~~~~~~~v~~~d~~--g~~~~~~~~~~~~~g---------~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNKR--GYPIGQILIPGRDEG---------HMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp TCCEEEEEETTTEEEEECTT--SCEEEEEECTTGGGT---------CSCBCCEEEECTTSCEEEEEEECG
T ss_pred CCCEEEEEcCCCEEEEECCC--CCEEEEEEcCCCccc---------cccCcceEEECCCCCEEEEEeCcc
Confidence 9988777654 899999984 566666654432000 000015899999987776655553
No 179
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=1.5e-13 Score=125.02 Aligned_cols=269 Identities=9% Similarity=0.006 Sum_probs=161.0
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
+.+.+|++ +++|+++++...++.+.+++......... .. ......
T Consensus 24 ~~v~~va~--d~~G~l~v~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~~~ 68 (329)
T 3fvz_A 24 GQVSGVAL--DSKNNLVIFHRGDHVWDGNSFDSKFVYQQ---RG------------------------------LGPIEE 68 (329)
T ss_dssp SCEEEEEE--CTTCCEEEEECTTCCCCTTSBCTTSCBSC---GG------------------------------GCSCCS
T ss_pred CCceEEEE--CCCCCEEEEeCCCCeEEeeccCcceeecc---cc------------------------------cccccC
Confidence 67999999 78998888888775443332221110000 00 000012
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC--CCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK--PSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~i 270 (457)
+.+.+||.++. +.+.....++......++++|+|+++++. .++.|++||.......+..+... +..-.++...+
T Consensus 69 ~~i~~~d~~~g---~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P 145 (329)
T 3fvz_A 69 DTILVIDPNNA---EILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQP 145 (329)
T ss_dssp CCEEEECTTTC---CEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSE
T ss_pred CcEEEEECCCC---eEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCC
Confidence 34555554321 11222213445578899999999988888 89999999987221133332110 00013445578
Q ss_pred EEEEEec-CCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEec
Q 012721 271 TSAEFHP-IYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY 347 (457)
Q Consensus 271 ~~v~~~p-~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~ 347 (457)
..++++| ++ .++++.+ .++.|++||. .++.. ..+....... ....++-.....++++|+ +.++++...
T Consensus 146 ~~ia~~~~~g-~lyv~d~~~~~~I~~~~~-~g~~~----~~~~~~g~~~---~~~~~~~~~p~gia~d~~~g~l~v~d~~ 216 (329)
T 3fvz_A 146 TDVAVEPSTG-AVFVSDGYCNSRIVQFSP-SGKFV----TQWGEESSGS---SPRPGQFSVPHSLALVPHLDQLCVADRE 216 (329)
T ss_dssp EEEEECTTTC-CEEEEECSSCCEEEEECT-TSCEE----EEECEECCSS---SCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred cEEEEeCCCC-eEEEEeCCCCCeEEEEcC-CCCEE----EEeccCCCCC---CCCCcccCCCcEEEEECCCCEEEEEECC
Confidence 9999999 67 8888886 6999999994 44322 2222100000 000112245789999999 665556544
Q ss_pred -CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC------CCcEEEEEeCCCcEEEEecCCCCcee
Q 012721 348 -MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG------DGLHFATGSYSNLLRIFSHGVGSAGG 420 (457)
Q Consensus 348 -~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~------d~~~l~s~~~dg~i~iw~~~~~~~~~ 420 (457)
+.|++||..+ ++.+..+....... .+..++|+| +++..++...+.+|++|++.++ +..
T Consensus 217 ~~~I~~~~~~~-G~~~~~~~~~~~~~-------------~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g-~~~ 281 (329)
T 3fvz_A 217 NGRIQCFKTDT-KEFVREIKHASFGR-------------NVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG-EII 281 (329)
T ss_dssp TTEEEEEETTT-CCEEEEECCTTTTT-------------CEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC-CEE
T ss_pred CCEEEEEECCC-CcEEEEEeccccCC-------------CcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC-eEE
Confidence 8999999974 77777765332111 115788888 3333333334568999999998 556
Q ss_pred eEE---ecCCCcceeeeeccCCcceec
Q 012721 421 ITV---EAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 421 ~~~---~~~~~~v~~~~~~p~~~~~~~ 444 (457)
..+ .++......++++|++....+
T Consensus 282 ~~~~~~~~~~~~p~~ia~~~dG~lyva 308 (329)
T 3fvz_A 282 DVFKPVRKHFDMPHDIVASEDGTVYIG 308 (329)
T ss_dssp EEECCSSSCCSSEEEEEECTTSEEEEE
T ss_pred EEEcCCCCccCCeeEEEECCCCCEEEE
Confidence 665 467778899999999965555
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.62 E-value=1.3e-13 Score=126.33 Aligned_cols=241 Identities=14% Similarity=0.107 Sum_probs=153.9
Q ss_pred ccCCceEEEEECCCCCEEEEEe---------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGD---------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH 100 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 100 (457)
.....+..+++ ||+++|... .++.|.+|++.+++.. .+
T Consensus 12 ~~~~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~----------------------------~l--- 58 (347)
T 2gop_A 12 AKFAYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR----------------------------FI--- 58 (347)
T ss_dssp CCSCEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE----------------------------EE---
T ss_pred eeeEEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE----------------------------Ec---
Confidence 34567888889 898887642 2567889998776531 11
Q ss_pred CccccccccccccCcEEEEEEEecCCCCEEEEeeCC---C--eEEEEEecccceeEEEeecCCCceeeeeeccccccccc
Q 012721 101 EPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND---K--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMN 175 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (457)
..+..++| +|+|+.|+.++.+ + .|.+|++.+++...+..
T Consensus 59 -------------~~~~~~~~--SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~--------------------- 102 (347)
T 2gop_A 59 -------------ENATMPRI--SPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILE--------------------- 102 (347)
T ss_dssp -------------ESCEEEEE--CTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEE---------------------
T ss_pred -------------ccCCCeEE--CCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEc---------------------
Confidence 13678899 8999999887643 3 36667777665443321
Q ss_pred cCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC----------------
Q 012721 176 EHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------- 238 (457)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------------- 238 (457)
+.. +..++|+||++.|+.+ .+
T Consensus 103 -----------------------------------------~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~ 140 (347)
T 2gop_A 103 -----------------------------------------AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAW 140 (347)
T ss_dssp -----------------------------------------ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC
T ss_pred -----------------------------------------CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEccccee
Confidence 122 7889999999988876 32
Q ss_pred -----------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-------eEEEEEccCC
Q 012721 239 -----------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-------FVRLVDMRQS 300 (457)
Q Consensus 239 -----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-------~i~lwd~~~~ 300 (457)
..|++||+. .++....+ .. . .+..++|+|+| +++++..++ ...||.+.++
T Consensus 141 ~~g~~~~~~~~~~l~~~d~~-~~~~~~~l-------~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 141 FDDLGFFDGEKTTFWIFDTE-SEEVIEEF-------EK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp ---------CEEEEEEEETT-TTEEEEEE-------EE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT
T ss_pred ecCcccccCccceEEEEECC-CCeEEeee-------cC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC
Confidence 578999998 45442222 22 2 57789999998 566555432 3455544443
Q ss_pred eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---------CcEEEEeccCCCCceeEeeecccc
Q 012721 301 ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---------MNLKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---------~~i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
+. ..+. .+ ..+..+ +|+|++|+..+. ..|.+|| . ++.......+...
T Consensus 209 ~~-----~~l~-------------~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~-~~~~~l~~~~~~~ 264 (347)
T 2gop_A 209 KE-----EKMF-------------EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--G-KEVMGILDEVDRG 264 (347)
T ss_dssp EE-----EEEE-------------EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--S-SCEEESSTTCCSE
T ss_pred ce-----EEec-------------cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--C-CceEeccccCCcc
Confidence 21 1111 11 234444 999999886542 3577777 2 4433333333332
Q ss_pred ccccccccCCCCccccce-EEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721 372 RPKLCDLYNNDSIFDKFE-CSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~-~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p 437 (457)
+ .. +.|+ |+ ++++++.++.++|| +.++ +. ..+..+...+..+.|+|
T Consensus 265 ~---------------~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g-~~-~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 265 V---------------GQAKIKD-GK-VYFTLFEEGSVNLY-IWDG-EI-KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp E---------------EEEEEET-TE-EEEEEEETTEEEEE-EESS-SE-EEEECSSSEEEEEEESS
T ss_pred c---------------CCccEEc-Cc-EEEEEecCCcEEEE-EcCC-ce-EEEecCCCeEEeeeeeC
Confidence 2 34 8899 88 88999999999999 8855 44 33444577889999998
No 181
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.62 E-value=9.3e-13 Score=117.20 Aligned_cols=231 Identities=10% Similarity=0.077 Sum_probs=158.3
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
..+.++++ ++++.++++...++.|.+|+.. ++....+.....
T Consensus 30 ~~p~~v~~--~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~----------------------------------- 71 (286)
T 1q7f_A 30 TEPSGVAV--NAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK----------------------------------- 71 (286)
T ss_dssp SCEEEEEE--CTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS-----------------------------------
T ss_pred CCCceEEE--CCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC-----------------------------------
Confidence 56889999 6888888888889999999977 433322110000
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEe-CCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISN-NSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
..++...+..+++ .+++.++++. . ++.|.+||.. +.....+. ..+...+
T Consensus 72 --------------------~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~--g~~~~~~~------~~~~~~~ 123 (286)
T 1q7f_A 72 --------------------RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY--GQFVRKFG------ATILQHP 123 (286)
T ss_dssp --------------------STTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT--SCEEEEEC------TTTCSCE
T ss_pred --------------------CcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC--CcEEEEec------CccCCCc
Confidence 0234556889999 5778777776 4 8999999954 44444331 2244568
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
.+++++|+| +++++...++.|.+||.... .. ..+.. ..+...+..++++|+|+++++... +.
T Consensus 124 ~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~----~~~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~ 186 (286)
T 1q7f_A 124 RGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VL----HKFGC-----------SKHLEFPNGVVVNDKQEIFISDNRAHC 186 (286)
T ss_dssp EEEEECTTS-CEEEEETTTTEEEEECTTSC-EE----EEEEC-----------TTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred eEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EE----EEeCC-----------CCccCCcEEEEECCCCCEEEEECCCCE
Confidence 999999999 88888888899999996542 21 11211 012345889999999997777654 99
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCC-cEEEEecCCCCceeeEEecCCC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSN-LLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
|++||.. ++.+..+..+.... ....++++++|+++++...++ .|.+|+.. + .....+..+..
T Consensus 187 i~~~~~~--g~~~~~~~~~g~~~-------------~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g-~~~~~~~~~~~ 249 (286)
T 1q7f_A 187 VKVFNYE--GQYLRQIGGEGITN-------------YPIGVGINSNGEILIADNHNNFNLTIFTQD-G-QLISALESKVK 249 (286)
T ss_dssp EEEEETT--CCEEEEESCTTTSC-------------SEEEEEECTTCCEEEEECSSSCEEEEECTT-S-CEEEEEEESSC
T ss_pred EEEEcCC--CCEEEEEccCCccC-------------CCcEEEECCCCCEEEEeCCCCEEEEEECCC-C-CEEEEEcccCC
Confidence 9999974 55565554332110 115899999999888888776 99999954 4 44555555443
Q ss_pred --cceeeeeccCCcceec
Q 012721 429 --ENRKPILQAAPRARRS 444 (457)
Q Consensus 429 --~v~~~~~~p~~~~~~~ 444 (457)
.+..++++|++....+
T Consensus 250 ~~~~~~i~~~~~g~l~vs 267 (286)
T 1q7f_A 250 HAQCFDVALMDDGSVVLA 267 (286)
T ss_dssp CSCEEEEEEETTTEEEEE
T ss_pred CCcceeEEECCCCcEEEE
Confidence 3668999999976655
No 182
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.61 E-value=3.1e-13 Score=119.19 Aligned_cols=237 Identities=8% Similarity=0.001 Sum_probs=157.2
Q ss_pred ceEEEEECCCCCEEE-EEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 34 IVSAIEFDKTGDYLA-VGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 34 ~V~~~~~s~~~~~la-tg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
...+++++++|++++ +...++.|.+|+..+.... .....+.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~---------------------------~~~~~~~----------- 66 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTT---------------------------VLPFNGL----------- 66 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----E---------------------------ECCCCSC-----------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccc---------------------------eEeeCCc-----------
Confidence 789999999999777 5467788999986554321 0001111
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..+.++++ ++++.++++.. ++.|.+|+..++..... .
T Consensus 67 -~~p~~i~~--~~~g~l~v~~~-~~~i~~~d~~~~~~~~~-~-------------------------------------- 103 (270)
T 1rwi_B 67 -YQPQGLAV--DGAGTVYVTDF-NNRVVTLAAGSNNQTVL-P-------------------------------------- 103 (270)
T ss_dssp -CSCCCEEE--CTTCCEEEEET-TTEEEEECTTCSCCEEC-C--------------------------------------
T ss_pred -CCcceeEE--CCCCCEEEEcC-CCEEEEEeCCCceEeee-e--------------------------------------
Confidence 34677888 67887666655 88899998765432211 0
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
......+..++++++++++++. .++.|.+|+.. ....... .......+.
T Consensus 104 ----------------------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-~~~~~~~-------~~~~~~~p~ 153 (270)
T 1rwi_B 104 ----------------------FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAG-SKTQTVL-------PFTGLNDPD 153 (270)
T ss_dssp ----------------------CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTT-CCSCEEC-------CCCSCCSCC
T ss_pred ----------------------cCCcCCCcceEECCCCCEEEEECCCCEEEEEECC-CceeEee-------ccccCCCce
Confidence 1122457899999999988877 78999999765 2222111 112234577
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcE
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNL 350 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i 350 (457)
+++++++| +++++...++.|.+||........ ... .+...+..++++++|.++++... +.|
T Consensus 154 ~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~----~~~-------------~~~~~p~~i~~d~~g~l~v~~~~~~~v 215 (270)
T 1rwi_B 154 GVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVV----LPF-------------TDITAPWGIAVDEAGTVYVTEHNTNQV 215 (270)
T ss_dssp CEEECTTC-CEEEEEGGGTEEEEECTTTCCEEE----CCC-------------SSCCSEEEEEECTTCCEEEEETTTSCE
T ss_pred eEEEeCCC-CEEEEECCCCEEEEEecCCCceEe----ecc-------------cCCCCceEEEECCCCCEEEEECCCCcE
Confidence 89999999 888877788999999987653221 000 11145789999999976666544 899
Q ss_pred EEEeccCCCCceeEee-eccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 351 KLWDIRMDSTPVATFK-IHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 351 ~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.+||... ....... .+... ...++++++|+++++...+++|+++++...
T Consensus 216 ~~~~~~~--~~~~~~~~~~~~~---------------p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 216 VKLLAGS--TTSTVLPFTGLNT---------------PLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEECTTC--SCCEECCCCSCSC---------------EEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred EEEcCCC--CcceeeccCCCCC---------------ceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 9999863 2222221 11111 158999999998888889999999998865
No 183
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.61 E-value=2.5e-12 Score=124.50 Aligned_cols=268 Identities=10% Similarity=0.003 Sum_probs=177.8
Q ss_pred CCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEE
Q 012721 42 KTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRW 121 (457)
Q Consensus 42 ~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~ 121 (457)
+.+.++++...+++|.++|..+++. +.++... ..+..+.|
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v---------------------------~~~i~~g-------------~~p~~v~~ 204 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI---------------------------KTVLDTG-------------YAVHISRL 204 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE---------------------------EEEEECS-------------SCEEEEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE---------------------------EEEEeCC-------------CCccceEE
Confidence 4455677778889999999988764 2333322 34678888
Q ss_pred EecCCCCEEEEeeCCCeEEEEEec--ccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEE
Q 012721 122 CAAPNGSMFILSTNDKTIKLWKVR--DQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIA 199 (457)
Q Consensus 122 ~~s~~~~~l~s~s~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 199 (457)
+++|+++++++.|+.|.+||+. +++....+.
T Consensus 205 --SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~--------------------------------------------- 237 (567)
T 1qks_A 205 --SASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK--------------------------------------------- 237 (567)
T ss_dssp --CTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE---------------------------------------------
T ss_pred --CCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe---------------------------------------------
Confidence 8999999999999999999995 554433221
Q ss_pred eccCccccccceeeccCCCCCeeEEEeC----CCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCccc---CCCC-c
Q 012721 200 NVGNSVHARCQKVYPHAHDFNINSISNN----SDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMD---DLTE-V 269 (457)
Q Consensus 200 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~---~~~~-~ 269 (457)
. ......++|+ |||++++++ .++.|.++|.. ..+.++.+.+...... .|.. .
T Consensus 238 ---------------~--G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~-t~~~~~~i~~~~~~~~~~~~~p~~r 299 (567)
T 1qks_A 238 ---------------I--GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE-TLEPKKIQSTRGMTYDEQEYHPEPR 299 (567)
T ss_dssp ---------------C--CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETT-TCCEEEEEECCEECTTTCCEESCCC
T ss_pred ---------------c--CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECC-CCcEEEEEeccccccccccccCCCc
Confidence 1 1134688999 699998886 78999999988 5666665543221111 1222 5
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y- 347 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~- 347 (457)
+..+..+++++.+++....+|.|.++|....+... +..+.. ......+.|+|+|++++++. .
T Consensus 300 va~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i~~--------------~~~~~d~~~~pdgr~~~va~~~s 363 (567)
T 1qks_A 300 VAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEISA--------------ERFLHDGGLDGSHRYFITAANAR 363 (567)
T ss_dssp EEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEEEC--------------CSSEEEEEECTTSCEEEEEEGGG
T ss_pred eEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeeeec--------------cccccCceECCCCCEEEEEeCCC
Confidence 77888899886677777788999999987643210 011111 23466789999999988765 3
Q ss_pred CcEEEEeccCCCCceeEeee-ccccccccccccCCCCccccceEE-EcCCCc-EEEEEe-CCCcEEEEecCCCC------
Q 012721 348 MNLKLWDIRMDSTPVATFKI-HEHLRPKLCDLYNNDSIFDKFECS-VSGDGL-HFATGS-YSNLLRIFSHGVGS------ 417 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~s~d~~-~l~s~~-~dg~i~iw~~~~~~------ 417 (457)
+.|.++|+.+ ++.+..+.. ....-.. ..+. ++|++. ..+++. .++.|.++|..+++
T Consensus 364 n~V~ViD~~t-~kl~~~i~vgg~~Phpg-------------~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~ 429 (567)
T 1qks_A 364 NKLVVIDTKE-GKLVAIEDTGGQTPHPG-------------RGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAW 429 (567)
T ss_dssp TEEEEEETTT-TEEEEEEECSSSSBCCT-------------TCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBT
T ss_pred CeEEEEECCC-CcEEEEEeccCcCCCCc-------------cceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccC
Confidence 9999999986 666665543 2111000 1233 588754 444443 46899999998732
Q ss_pred ceeeEEecCCCcceeeeeccCCcceec
Q 012721 418 AGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
+...++......-..+..||+++....
T Consensus 430 kvv~~i~~~g~g~~~i~~~p~~~~l~v 456 (567)
T 1qks_A 430 KILDSFPALGGGSLFIKTHPNSQYLYV 456 (567)
T ss_dssp SEEEEEECSCSCCCCEECCTTCSEEEE
T ss_pred EEEEEEecCCCCCEEEEeCCCCCeEEE
Confidence 455666655444456778998875554
No 184
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.61 E-value=9e-12 Score=111.34 Aligned_cols=268 Identities=9% Similarity=0.020 Sum_probs=178.2
Q ss_pred cCCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
+...+.+++++++|+++++...++.|.+|+.. ++.. . ..+..+.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~-------------------------~-~~~~~~~--------- 56 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKIT-------------------------E-YPLPTPD--------- 56 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEE-------------------------E-EECSSTT---------
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeE-------------------------E-ecCCccc---------
Confidence 34689999999999988877667889999977 4321 0 0111122
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
..+.++++ ++++.++++...++.|..|+.. ++.... ..
T Consensus 57 ---~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~----------------------------------- 94 (299)
T 2z2n_A 57 ---AKVMCLTI--SSDGEVWFTENAANKIGRITKK-GIIKEY-TL----------------------------------- 94 (299)
T ss_dssp ---CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC-----------------------------------
T ss_pred ---CceeeEEE--CCCCCEEEeCCCCCeEEEECCC-CcEEEE-eC-----------------------------------
Confidence 56888998 6888877777778889999875 332211 10
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
......+..+++.+++.++++. .++.|..||.. . ...... .......
T Consensus 95 ------------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g-~~~~~~------~~~~~~~ 142 (299)
T 2z2n_A 95 ------------------------PNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDD-G-KIREYE------LPNKGSY 142 (299)
T ss_dssp ------------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-C-CEEEEE------CSSTTCC
T ss_pred ------------------------CCcCCCceeeEECCCCCEEEEecCCceEEEECCC-C-CEEEec------CCCCCCC
Confidence 1123467889999999888887 78999999984 3 222211 2223456
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-C
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-M 348 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~ 348 (457)
+..+++.++| .++++...++.|..||. +++.. .+.. ......+..++++++|++.++... +
T Consensus 143 ~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~ 204 (299)
T 2z2n_A 143 PSFITLGSDN-ALWFTENQNNAIGRITE-SGDIT-----EFKI-----------PTPASGPVGITKGNDDALWFVEIIGN 204 (299)
T ss_dssp EEEEEECTTS-CEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEE-----EeeC-----------CCCCCcceeEEECCCCCEEEEccCCc
Confidence 8999999998 88887777889999998 54322 1111 011245789999999987776643 8
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN 428 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 428 (457)
.|.+||. . ++.. .+...... ..+..++++++|+++++...++.|..||. ++......+..+..
T Consensus 205 ~i~~~~~-~-g~~~-~~~~~~~~-------------~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~ 267 (299)
T 2z2n_A 205 KIGRITT-S-GEIT-EFKIPTPN-------------ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSA 267 (299)
T ss_dssp EEEEECT-T-CCEE-EEECSSTT-------------CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEEEECSSSSC
T ss_pred eEEEECC-C-CcEE-EEECCCCC-------------CCceeEEECCCCCEEEeccCCceEEEECC-CCceEEEeCCCCCC
Confidence 8999998 4 4432 23211110 01158999999997776667889999998 45222222344556
Q ss_pred cceeeeeccCCcceec
Q 012721 429 ENRKPILQAAPRARRS 444 (457)
Q Consensus 429 ~v~~~~~~p~~~~~~~ 444 (457)
.+.++++ +++....+
T Consensus 268 ~~~~i~~-~~g~l~v~ 282 (299)
T 2z2n_A 268 EPHGICF-DGETIWFA 282 (299)
T ss_dssp CEEEEEE-CSSCEEEE
T ss_pred ccceEEe-cCCCEEEE
Confidence 7888888 88776555
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=4.5e-13 Score=135.00 Aligned_cols=234 Identities=12% Similarity=-0.010 Sum_probs=153.8
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCC-----eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDK-----TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..+..++| ||||++|+.++.++ .|++||+.+++......
T Consensus 125 ~~~~~~~~--SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~---------------------------------- 168 (710)
T 2xdw_A 125 VALRGYAF--SEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL---------------------------------- 168 (710)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----------------------------------
T ss_pred EEEEEEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc----------------------------------
Confidence 35788999 79999998765433 89999999887654211
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCe----------------EEEEEcCCCcc
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR----------------INLWNLEISDQ 251 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~----------------i~iwd~~~~~~ 251 (457)
.. ..+..++|+|||+.|+.+ .++. |++|++.+...
T Consensus 169 --------------------------~~--~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~ 220 (710)
T 2xdw_A 169 --------------------------ER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS 220 (710)
T ss_dssp --------------------------EE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG
T ss_pred --------------------------cC--cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc
Confidence 01 125678999999999887 6655 99999984332
Q ss_pred e-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-----CCeEEEEEccC------CeeeccccccccccccccCc
Q 012721 252 C-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-----RGFVRLVDMRQ------SALCDHSARILRDAAESHGS 319 (457)
Q Consensus 252 ~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-----dg~i~lwd~~~------~~~~~~~~~~~~~~~~~~~~ 319 (457)
. ..++ ....+...+..+.|+|+| ++|+.++. +..|.+||+.+ +... ...+
T Consensus 221 ~~~~v~-----~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l--------- 282 (710)
T 2xdw_A 221 EDILCA-----EFPDEPKWMGGAELSDDG-RYVLLSIREGCDPVNRLWYCDLQQESNGITGILK---WVKL--------- 282 (710)
T ss_dssp GCEEEE-----CCTTCTTCEEEEEECTTS-CEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEE---------
T ss_pred cceEEe-----ccCCCCeEEEEEEEcCCC-CEEEEEEEccCCCccEEEEEECcccccccCCccc---eEEe---------
Confidence 1 1221 122345667899999999 87777654 57899999876 3210 0111
Q ss_pred ccceeccccceEEEEEccCCCeEEEEec-----CcEEEEeccCCCC-ceeEeeeccccccccccccCCCCccccceEEEc
Q 012721 320 KSFFTEIIASISDIKFANDGQHLLSRDY-----MNLKLWDIRMDST-PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS 393 (457)
Q Consensus 320 ~~~~~~h~~~v~~~~~s~~g~~l~s~~~-----~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 393 (457)
..+...+.. .|+|+|+.|+..++ +.|.+||+..... ....+..+.... .+..++|+
T Consensus 283 ----~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-------------~~~~~~~~ 344 (710)
T 2xdw_A 283 ----IDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD-------------VLEWVACV 344 (710)
T ss_dssp ----ECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC-------------EEEEEEEE
T ss_pred ----eCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC-------------eEEEEEEE
Confidence 122233433 48899988775432 4689999875221 234444443310 01468888
Q ss_pred CCCcEEEEEeCCCc--EEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721 394 GDGLHFATGSYSNL--LRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 394 ~d~~~l~s~~~dg~--i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
+++.++++...|+. |++|++.++ .....+..+.+.+..+.++|++...+.+.++
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g-~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATG-ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTC-CEEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred cCCEEEEEEEECCEEEEEEEECCCC-CEEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence 88888889988885 566777677 4556677777788889999988766654444
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.60 E-value=2.9e-13 Score=124.12 Aligned_cols=152 Identities=11% Similarity=0.044 Sum_probs=92.4
Q ss_pred CeeEEEeCCCCCEEEEe-CC------C-eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC--
Q 012721 220 NINSISNNSDCETFVSA-DD------L-RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-- 289 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d------~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-- 289 (457)
.+..++|+|+| +++++ .+ . ...||.++ .++...+ ..+ ..+..+ +|+| +.|+.++.+
T Consensus 172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l--------~~~-~~~~~~--spdg-~~l~~~~~~~~ 237 (347)
T 2gop_A 172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKM--------FEK-VSFYAV--DSDG-ERILLYGKPEK 237 (347)
T ss_dssp TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEE--------EEE-ESEEEE--EECS-SCEEEEECCSS
T ss_pred CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEEe--------ccC-cceeeE--CCCC-CEEEEEEcccc
Confidence 67789999999 77776 43 2 44555554 4444332 222 344444 9999 777666543
Q ss_pred ------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEE-EEEccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721 290 ------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD-IKFANDGQHLLSRDY-MNLKLWDIRMDSTP 361 (457)
Q Consensus 290 ------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~ 361 (457)
..|.+|| +++.. .+.. +|...+.. +.|+ ++ +++++++ +.++|| +. .++.
T Consensus 238 ~~~~~~~~l~~~d--~~~~~----~l~~-------------~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~g~~ 294 (347)
T 2gop_A 238 KYMSEHNKLYIYD--GKEVM----GILD-------------EVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-DGEI 294 (347)
T ss_dssp SCCCSSCEEEEEC--SSCEE----ESST-------------TCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-SSSE
T ss_pred CCccccceEEEEC--CCceE----eccc-------------cCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-CCce
Confidence 4678887 43221 1111 22346775 8999 88 7777654 899999 87 3554
Q ss_pred eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE-EEEecCCCCceeeEEecCCCc
Q 012721 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL-RIFSHGVGSAGGITVEAGKNE 429 (457)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i-~iw~~~~~~~~~~~~~~~~~~ 429 (457)
. .+..+...+ .+++|+| .++++++.++.. .||.+. + + ...+..|...
T Consensus 295 ~-~~~~~~~~v---------------~~~~~s~--~~~~~~~~~~~~~~l~~~~-g-~-~~~lt~~n~~ 342 (347)
T 2gop_A 295 K-PIAKGRHWI---------------MGFDVDE--IVVYLKETATRLRELFTWD-G-E-EKQLTDYNDP 342 (347)
T ss_dssp E-EEECSSSEE---------------EEEEESS--SEEEEEECSSSCCEEEEES-S-S-EEECCCTTST
T ss_pred E-EEecCCCeE---------------EeeeeeC--cEEEEEcCCCChHHheEeC-C-c-EEEeccccHh
Confidence 3 333333332 5789999 677777777665 777776 5 3 3445555543
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=2.1e-12 Score=113.83 Aligned_cols=246 Identities=10% Similarity=0.033 Sum_probs=162.9
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEE
Q 012721 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (457)
Q Consensus 43 ~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (457)
.+++|++++.++.|.+||.++++. +.++..+.. ..+.++.+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~---------------------------~w~~~~~~~-----------~~~~~~~~- 44 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI---------------------------VWEYPLEKG-----------WECNSVAA- 44 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE---------------------------EEEEECCTT-----------CCCCEEEE-
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE---------------------------EEEeCCCcc-----------CCCcCeEE-
Confidence 468999999999999999887774 344544431 24678888
Q ss_pred ecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (457)
Q Consensus 123 ~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 202 (457)
.++|++++ +.++.|..||. +++.+..+.
T Consensus 45 -~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~------------------------------------------------ 72 (276)
T 3no2_A 45 -TKAGEILF--SYSKGAKMITR-DGRELWNIA------------------------------------------------ 72 (276)
T ss_dssp -CTTSCEEE--ECBSEEEEECT-TSCEEEEEE------------------------------------------------
T ss_pred -CCCCCEEE--eCCCCEEEECC-CCCEEEEEc------------------------------------------------
Confidence 68998888 45778999998 666543322
Q ss_pred CccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 280 (457)
.+....+.++.+.++|+++++. . ++.|..+|.. ++.+..+.... ....+......+++.++|
T Consensus 73 ------------~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~--Gk~l~~~~~~~-~~~~~~~~~~~v~~~~~G- 136 (276)
T 3no2_A 73 ------------APAGCEMQTARILPDGNALVAWCGHPSTILEVNMK--GEVLSKTEFET-GIERPHAQFRQINKNKKG- 136 (276)
T ss_dssp ------------CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT--SCEEEEEEECC-SCSSGGGSCSCCEECTTS-
T ss_pred ------------CCCCccccccEECCCCCEEEEecCCCCEEEEEeCC--CCEEEEEeccC-CCCcccccccCceECCCC-
Confidence 1122357788999999999987 6 7788888764 55444443321 111222334556788999
Q ss_pred cEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC
Q 012721 281 NLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS 359 (457)
Q Consensus 281 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~ 359 (457)
+++++...++.|..||.. ++.. ..+.. .....++...++|++++++.+ +.|..+|..+ +
T Consensus 137 ~~lv~~~~~~~v~~~d~~-G~~~----w~~~~--------------~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~t-G 196 (276)
T 3no2_A 137 NYLVPLFATSEVREIAPN-GQLL----NSVKL--------------SGTPFSSAFLDNGDCLVACGDAHCFVQLNLES-N 196 (276)
T ss_dssp CEEEEETTTTEEEEECTT-SCEE----EEEEC--------------SSCCCEEEECTTSCEEEECBTTSEEEEECTTT-C
T ss_pred CEEEEecCCCEEEEECCC-CCEE----EEEEC--------------CCCccceeEcCCCCEEEEeCCCCeEEEEeCcC-C
Confidence 999999999999999988 6543 22222 123556778899999998876 7899999875 8
Q ss_pred CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC--------CcEEEEecCCCCceeeEEe
Q 012721 360 TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS--------NLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d--------g~i~iw~~~~~~~~~~~~~ 424 (457)
+.+.++........ ....+..+...++|.++++.... +..+++++...++.+-.+.
T Consensus 197 ~~~w~~~~~~~~~~---------~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 197 RIVRRVNANDIEGV---------QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp CEEEEEEGGGSBSC---------CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred cEEEEecCCCCCCc---------cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEec
Confidence 88887764431100 11123578888999988876421 2345666643334444443
No 188
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=2.9e-12 Score=114.63 Aligned_cols=222 Identities=11% Similarity=0.045 Sum_probs=147.5
Q ss_pred CcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
....+++| +++++ +++++..++.|..|+..++ ....
T Consensus 28 ~~~eg~~~--d~~g~~l~~~~~~~~~i~~~~~~~~-~~~~---------------------------------------- 64 (296)
T 3e5z_A 28 TWTEGPVY--VPARSAVIFSDVRQNRTWAWSDDGQ-LSPE---------------------------------------- 64 (296)
T ss_dssp SSEEEEEE--EGGGTEEEEEEGGGTEEEEEETTSC-EEEE----------------------------------------
T ss_pred ccccCCeE--eCCCCEEEEEeCCCCEEEEEECCCC-eEEE----------------------------------------
Confidence 45788999 67887 7778888999999998876 3221
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
..+...+.+++++|+|+++++. .++.|.+||.. .++........ .......+.
T Consensus 65 ----------------------~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~-~g~~~~~~~~~---~~~~~~~~~ 118 (296)
T 3e5z_A 65 ----------------------MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP-GGEWESIADSF---EGKKLNSPN 118 (296)
T ss_dssp ----------------------ESSCSSEEEEEECTTCCEEEEETTTTEEEEECST-TCCEEEEECEE---TTEECCCCC
T ss_pred ----------------------ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC-CCcEEEEeecc---CCCCCCCCC
Confidence 2234568899999999988887 77999999986 34433321100 011123467
Q ss_pred EEEEecCCccEEEE----Ecc-------------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE
Q 012721 272 SAEFHPIYCNLLAY----SSS-------------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (457)
Q Consensus 272 ~v~~~p~~~~~l~~----~~~-------------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 334 (457)
.++++|+| +++++ |.. .+.|..+|.. ++.. .+ ..+......++
T Consensus 119 ~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-----~~-------------~~~~~~~~gi~ 178 (296)
T 3e5z_A 119 DVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-----AP-------------IRDRVKPNGLA 178 (296)
T ss_dssp CEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-----EE-------------ECCCSSEEEEE
T ss_pred CEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-----Ee-------------ecCCCCCccEE
Confidence 89999999 88887 331 3455555554 3211 11 11234568899
Q ss_pred EccCCCeEEEEec-CcEEEEeccCCCCc---eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEE
Q 012721 335 FANDGQHLLSRDY-MNLKLWDIRMDSTP---VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRI 410 (457)
Q Consensus 335 ~s~~g~~l~s~~~-~~i~~wd~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~i 410 (457)
|+|+|+++++.+. +.|++|++...++. ...+..+.... ..++++++|+++++. ++.|.+
T Consensus 179 ~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p---------------~~i~~d~~G~l~v~~--~~~v~~ 241 (296)
T 3e5z_A 179 FLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKT---------------DGLRVDAGGLIWASA--GDGVHV 241 (296)
T ss_dssp ECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCC---------------CSEEEBTTSCEEEEE--TTEEEE
T ss_pred ECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCC---------------CeEEECCCCCEEEEc--CCeEEE
Confidence 9999999865554 89999999632443 22221111111 479999999977666 789999
Q ss_pred EecCCCCceeeEEecCCCcceeeee-ccCCcceec
Q 012721 411 FSHGVGSAGGITVEAGKNENRKPIL-QAAPRARRS 444 (457)
Q Consensus 411 w~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~~~ 444 (457)
|+.. + +....+..+.. +.+++| .|++.....
T Consensus 242 ~~~~-g-~~~~~~~~~~~-~~~~~f~~~d~~~L~v 273 (296)
T 3e5z_A 242 LTPD-G-DELGRVLTPQT-TSNLCFGGPEGRTLYM 273 (296)
T ss_dssp ECTT-S-CEEEEEECSSC-CCEEEEESTTSCEEEE
T ss_pred ECCC-C-CEEEEEECCCC-ceeEEEECCCCCEEEE
Confidence 9986 5 56667777777 899999 577764443
No 189
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.53 E-value=1.5e-12 Score=130.84 Aligned_cols=230 Identities=9% Similarity=-0.020 Sum_probs=145.4
Q ss_pred CcEEEEEEEecCCCCEEEE-----eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 114 EKINRVRWCAAPNGSMFIL-----STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s-----~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..+..++| ||||++|+. |+.+..|++||+.+++......
T Consensus 121 ~~~~~~~~--SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~---------------------------------- 164 (695)
T 2bkl_A 121 VSLGTWAV--SWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDV---------------------------------- 164 (695)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCC----------------------------------
T ss_pred EEEEEEEE--CCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcc----------------------------------
Confidence 46889999 799999984 4456789999999886430000
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCe-------------EEEEEcCCCcce-e
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLR-------------INLWNLEISDQC-F 253 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~-------------i~iwd~~~~~~~-~ 253 (457)
+.. .....++|+|||+.|+.+ .|.. |++|++.+.... .
T Consensus 165 -------------------------~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~ 217 (695)
T 2bkl_A 165 -------------------------IEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDT 217 (695)
T ss_dssp -------------------------BSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCE
T ss_pred -------------------------cCc--ccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhce
Confidence 011 112578999999999887 7665 999999843321 2
Q ss_pred eeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC----eEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 254 NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
.++ ....+...+..+.|+|+| ++|+.++.++ .|.+||..+++. ..+ ..+...
T Consensus 218 lv~-----~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~~-----~~l-------------~~~~~~ 273 (695)
T 2bkl_A 218 VVH-----ERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKDF-----RLL-------------VKGVGA 273 (695)
T ss_dssp EEE-----CCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSSC-----EEE-------------EECSSC
T ss_pred EEE-----ecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCce-----EEe-------------ecCCCc
Confidence 221 123455678899999999 7777766555 566665544321 111 112234
Q ss_pred eEEEEEccCCCeEEEEe----cCcEEEEeccCCCCc--eeEeeecc-ccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 330 ISDIKFANDGQHLLSRD----YMNLKLWDIRMDSTP--VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 330 v~~~~~s~~g~~l~s~~----~~~i~~wd~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
+....+ ++|.+++..+ ++.|.+||+.. +.. ...+..+. .. .+..++|+ ++.++++.
T Consensus 274 ~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~--------------~l~~~~~~-~~~lv~~~ 336 (695)
T 2bkl_A 274 KYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAK-PARASWKEIVPEDSSA--------------SLLSVSIV-GGHLSLEY 336 (695)
T ss_dssp CEEEEE-ETTEEEEEECTTCTTCEEEEEBTTB-CSGGGCEEEECCCSSC--------------EEEEEEEE-TTEEEEEE
T ss_pred eEEEEe-cCCcEEEEECCCCCCCEEEEEeCCC-CCccCCeEEecCCCCC--------------eEEEEEEE-CCEEEEEE
Confidence 555555 6666444443 27899999865 332 23333332 21 01467787 77888999
Q ss_pred eCCCcEEEEecC-CCCceeeEEecC-CCcceeeeeccCCcceeccccc
Q 012721 403 SYSNLLRIFSHG-VGSAGGITVEAG-KNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 403 ~~dg~i~iw~~~-~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
..|+..+||.+. ++ .....+..+ .+.+..+.++|++...+...++
T Consensus 337 ~~dg~~~l~~~~~~g-~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 383 (695)
T 2bkl_A 337 LKDATSEVRVATLKG-KPVRTVQLPGVGAASNLMGLEDLDDAYYVFTS 383 (695)
T ss_dssp EETTEEEEEEEETTC-CEEEECCCSSSSEECCCBSCTTCSEEEEEEEE
T ss_pred EECCEEEEEEEeCCC-CeeEEecCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 999998888765 34 344445544 6677888899988777654443
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.53 E-value=1.1e-10 Score=104.34 Aligned_cols=269 Identities=9% Similarity=0.035 Sum_probs=178.8
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...+.+++++++|++.++...++.|.+|+.. ++.. . ..+..+.
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~-------------------------~-~~~~~~~---------- 61 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIK-------------------------E-FEVPTPD---------- 61 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceE-------------------------E-EECCCCC----------
Confidence 4578999999999988887778899999976 4321 0 0111122
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..+..+++ .+++.++++...++.|..||.. ++.... ..
T Consensus 62 --~~~~~i~~--~~~g~l~v~~~~~~~v~~~d~~-g~~~~~-~~------------------------------------ 99 (300)
T 2qc5_A 62 --AKVMCLIV--SSLGDIWFTENGANKIGKLSKK-GGFTEY-PL------------------------------------ 99 (300)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEE-EC------------------------------------
T ss_pred --CcceeEEE--CCCCCEEEEecCCCeEEEECCC-CCeEEe-cC------------------------------------
Confidence 45888988 6788777776667889999877 543221 10
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
......+.++++.+++.++++. .++.|..||.. +..... . +......+
T Consensus 100 -----------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~ 148 (300)
T 2qc5_A 100 -----------------------PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD--GTIYEY-D-----LPNKGSYP 148 (300)
T ss_dssp -----------------------SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT--SCEEEE-E-----CSSTTCCE
T ss_pred -----------------------CCCCCCCccceECCCCCEEEEccCCCeEEEECCC--CCEEEc-c-----CCCCCCCc
Confidence 1123467899999999988888 78999999987 332221 1 22234568
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
..+++.+++ +++++...++.|..||. .++.. .+.. ..+...+..++++++|++.++... +.
T Consensus 149 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 149 AFITLGSDN-ALWFTENQNNSIGRITN-TGKLE-----EYPL-----------PTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEecCCCeEEEECC-CCcEE-----EeeC-----------CCCCCCcceEEECCCCCEEEEccCCCE
Confidence 899999999 87777777889999998 44322 1111 111246789999999987776654 78
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 429 (457)
|.+||.. ++... +....... .+..++++++|++.++...++.|..|+. ++......+......
T Consensus 211 i~~~~~~--g~~~~-~~~~~~~~-------------~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~ 273 (300)
T 2qc5_A 211 IGRITTT--GEISE-YDIPTPNA-------------RPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAE 273 (300)
T ss_dssp EEEECTT--CCEEE-EECSSTTC-------------CEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCC
T ss_pred EEEEcCC--CcEEE-EECCCCCC-------------CceEEEECCCCCEEEeccCCCeEEEECC-CCcEEEEECCccCCc
Confidence 9999983 44332 21111100 1158999999997777666789999998 452232333434566
Q ss_pred ceeeeeccCCcceecc
Q 012721 430 NRKPILQAAPRARRSS 445 (457)
Q Consensus 430 v~~~~~~p~~~~~~~~ 445 (457)
+.++++.+++....++
T Consensus 274 ~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 274 PHGITFGKDGSVWFAL 289 (300)
T ss_dssp CCCEEECTTSCEEEEC
T ss_pred cceeEeCCCCCEEEEc
Confidence 8889999998766553
No 191
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=8.5e-12 Score=113.21 Aligned_cols=249 Identities=9% Similarity=0.067 Sum_probs=158.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
.....+++. +++++++...++.|.+||..+++. +.++.. .
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~---------------------------~~~i~~-~----------- 83 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE---------------------------VGRITG-F----------- 83 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE---------------------------EEEEEC-C-----------
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE---------------------------EEEcCC-C-----------
Confidence 456778885 355566666778999999987764 233322 1
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
.....+++ ++++..+++...++.|.+||..+++....+.....
T Consensus 84 -~~p~~i~~--~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~---------------------------------- 126 (328)
T 3dsm_A 84 -TSPRYIHF--LSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDM---------------------------------- 126 (328)
T ss_dssp -SSEEEEEE--EETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTC----------------------------------
T ss_pred -CCCcEEEE--eCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCc----------------------------------
Confidence 45788888 46775444444899999999998876654332110
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
.+.......+++ .++.++++. . ++.|.++|+. .++....+... ...
T Consensus 127 ----------------------~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~-t~~~~~~i~~g--------~~p 174 (328)
T 3dsm_A 127 ----------------------DMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTE-TDKVVDELTIG--------IQP 174 (328)
T ss_dssp ----------------------CTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETT-TTEEEEEEECS--------SCB
T ss_pred ----------------------cccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECC-CCeEEEEEEcC--------CCc
Confidence 011123345566 345555555 3 8999999998 45555443221 234
Q ss_pred EEEEEecCCccEEEEEccC----------CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 271 TSAEFHPIYCNLLAYSSSR----------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~d----------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
..+.++|+| ++++++..+ +.|.++|..+++.. ..+.. ........++|+|+++
T Consensus 175 ~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~------------~~g~~p~~la~~~d~~ 237 (328)
T 3dsm_A 175 TSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKF------------KLGDWPSEVQLNGTRD 237 (328)
T ss_dssp CCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEEC------------CTTCCCEEEEECTTSC
T ss_pred cceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEec------------CCCCCceeEEEecCCC
Confidence 678899999 777776654 78999999887643 12211 0013578999999999
Q ss_pred eEEEEecCcEEEEeccCCCCcee-EeeeccccccccccccCCCCccccceEEEcC-CCcEEEEE----eCCCcEEEEecC
Q 012721 341 HLLSRDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATG----SYSNLLRIFSHG 414 (457)
Q Consensus 341 ~l~s~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~----~~dg~i~iw~~~ 414 (457)
+|..++. .|.+||..+ ++... .+....... ...++++| ++.+.++. ..++.|.+||..
T Consensus 238 ~lyv~~~-~v~~~d~~t-~~~~~~~~~~~~~~~--------------p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 238 TLYWINN-DIWRMPVEA-DRVPVRPFLEFRDTK--------------YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEEEESS-SEEEEETTC-SSCCSSCSBCCCSSC--------------EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEEEEcc-EEEEEECCC-CceeeeeeecCCCCc--------------eEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 9988764 899999875 44321 111110110 15799999 45555665 568899999998
Q ss_pred CCCceeeEEec
Q 012721 415 VGSAGGITVEA 425 (457)
Q Consensus 415 ~~~~~~~~~~~ 425 (457)
+ +.+..+..
T Consensus 302 -g-~~~~~i~~ 310 (328)
T 3dsm_A 302 -G-KLIDEFYV 310 (328)
T ss_dssp -C-CEEEEEEE
T ss_pred -C-CEEEEEEe
Confidence 6 55555543
No 192
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.53 E-value=9.1e-12 Score=112.30 Aligned_cols=248 Identities=11% Similarity=0.127 Sum_probs=156.3
Q ss_pred CCceEEEEECCCCCEEEE-------EeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeee--eccCCc
Q 012721 32 VDIVSAIEFDKTGDYLAV-------GDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEP 102 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~lat-------g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~ 102 (457)
-....+++|+++|.++++ +..++.|.+|+..+++.. .+.. ..++.
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~-------------------------~~~~~~~~~~~- 70 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKT-------------------------VICKPEVNGYG- 70 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEE-------------------------EEECCEETTEE-
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEE-------------------------EEEecccCCCC-
Confidence 345689999999998888 677889999997766531 0000 01122
Q ss_pred cccccccccccCcEEEEEEEecCC-CCEEEEeeCCCeEEEEEecccceeEE-EeecCCCceeeeeeccccccccccCCCC
Q 012721 103 EFDYLKSLEIEEKINRVRWCAAPN-GSMFILSTNDKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (457)
Q Consensus 103 ~~~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (457)
..+.++++ +++ +.++++ +..+.|.+|+.. ++.... .... .
T Consensus 71 -----------~~~~~i~~--~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~--~--------------------- 112 (314)
T 1pjx_A 71 -----------GIPAGCQC--DRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDS--E--------------------- 112 (314)
T ss_dssp -----------CCEEEEEE--CSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCT--T---------------------
T ss_pred -----------CCCceEEE--ecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccC--C---------------------
Confidence 56888998 677 654444 444478889987 654321 1100 0
Q ss_pred CceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC---------------CeEEEE
Q 012721 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------------LRINLW 244 (457)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------------~~i~iw 244 (457)
......+.+++++++|+++++. .+ +.|..|
T Consensus 113 ----------------------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~ 158 (314)
T 1pjx_A 113 ----------------------------------GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF 158 (314)
T ss_dssp ----------------------------------SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE
T ss_pred ----------------------------------CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE
Confidence 1122357889999999888877 54 567777
Q ss_pred EcCCCcceeeeeecCCCcccCCCCceEEEEEe----cCCccEE-EEEccCCeEEEEEcc-CCeeeccccccccccccccC
Q 012721 245 NLEISDQCFNIVDMKPSNMDDLTEVITSAEFH----PIYCNLL-AYSSSRGFVRLVDMR-QSALCDHSARILRDAAESHG 318 (457)
Q Consensus 245 d~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~----p~~~~~l-~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~~~ 318 (457)
|.. +..... ..+......++++ |++ +.| ++...++.|.+||+. .++... ...+..
T Consensus 159 ~~~--g~~~~~--------~~~~~~~~~i~~~~~~d~dg-~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~~~~------ 219 (314)
T 1pjx_A 159 TTD--GQMIQV--------DTAFQFPNGIAVRHMNDGRP-YQLIVAETPTKKLWSYDIKGPAKIEN--KKVWGH------ 219 (314)
T ss_dssp CTT--SCEEEE--------EEEESSEEEEEEEECTTSCE-EEEEEEETTTTEEEEEEEEETTEEEE--EEEEEE------
T ss_pred CCC--CCEEEe--------ccCCCCcceEEEecccCCCC-CEEEEEECCCCeEEEEECCCCCcccc--ceEEEE------
Confidence 654 333222 1122446789999 998 655 444578999999986 332210 011111
Q ss_pred cccceeccc-cceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCC
Q 012721 319 SKSFFTEII-ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG 396 (457)
Q Consensus 319 ~~~~~~~h~-~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 396 (457)
+.++. .....++++++|+++++.. ++.|.+||.++ ++.+..+..+...+ .+++|+|++
T Consensus 220 ----~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~-g~~~~~~~~~~~~~---------------~~i~~~~dg 279 (314)
T 1pjx_A 220 ----IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDG-GQPKMRIRCPFEKP---------------SNLHFKPQT 279 (314)
T ss_dssp ----CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTC-BSCSEEEECSSSCE---------------EEEEECTTS
T ss_pred ----CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCC-CcEeEEEeCCCCCc---------------eeEEECCCC
Confidence 11122 4567899999998888764 48999999864 55555555443222 589999999
Q ss_pred cEEE-EEeCCCcEEEEecCCC
Q 012721 397 LHFA-TGSYSNLLRIFSHGVG 416 (457)
Q Consensus 397 ~~l~-s~~~dg~i~iw~~~~~ 416 (457)
+.|+ +...++.|..|++...
T Consensus 280 ~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 280 KTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp SEEEEEETTTTEEEEEECSSC
T ss_pred CEEEEEeCCCCeEEEEeCCCC
Confidence 9555 4455688999998753
No 193
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=1.1e-12 Score=132.65 Aligned_cols=160 Identities=9% Similarity=-0.012 Sum_probs=95.4
Q ss_pred CCCCeeEEEeCCCCCEEEEe-CC-----CeEEEEEcCCCc-ceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-
Q 012721 217 HDFNINSISNNSDCETFVSA-DD-----LRINLWNLEISD-QCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS- 288 (457)
Q Consensus 217 h~~~v~~~~~~~~~~~l~~~-~d-----~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~- 288 (457)
+...+..+.|+|||++|+.. .+ ..|++||+.... ..... +..+...+... +.|+| ..|+..+.
T Consensus 266 ~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~-------l~~~~~~~~~~-~~~dg-~~l~~~s~~ 336 (741)
T 1yr2_A 266 LPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTA-------LIPDLKAQWDF-VDGVG-DQLWFVSGD 336 (741)
T ss_dssp CTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEE-------EECSSSSCEEE-EEEET-TEEEEEECT
T ss_pred CCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEE-------ecCCCCceEEE-EeccC-CEEEEEECC
Confidence 33457899999999988876 44 389999998331 20222 22233334444 34888 66666654
Q ss_pred ---CCeEEEEEccCCe-eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCcee
Q 012721 289 ---RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 363 (457)
Q Consensus 289 ---dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~ 363 (457)
++.|.+||+.++. .. ..++.. +...+..+.++ ++.++++.. ++..+||.+...++...
T Consensus 337 ~~~~~~l~~~d~~~~~~~~---~~l~~~-------------~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~ 399 (741)
T 1yr2_A 337 GAPLKKIVRVDLSGSTPRF---DTVVPE-------------SKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG 399 (741)
T ss_dssp TCTTCEEEEEECSSSSCEE---EEEECC-------------CSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred CCCCCEEEEEeCCCCcccc---EEEecC-------------CCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence 4569999987741 11 012211 22346677777 455666654 47766666543355555
Q ss_pred Eeeec-cccccccccccCCCCccccceEEEcCCCcEEEE-E---eCCCcEEEEecCCCC
Q 012721 364 TFKIH-EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT-G---SYSNLLRIFSHGVGS 417 (457)
Q Consensus 364 ~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s-~---~~dg~i~iw~~~~~~ 417 (457)
.+..+ ...+ ..++++||+..|+. . ...++|++||+.+++
T Consensus 400 ~l~~~~~~~v---------------~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 400 AVSLPGIGSA---------------SGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ECBCSSSCEE---------------EEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred eccCCCCeEE---------------EEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 55432 2221 46889999876652 2 235789999998873
No 194
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.51 E-value=5.4e-12 Score=116.03 Aligned_cols=269 Identities=9% Similarity=0.013 Sum_probs=149.9
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.++|+|||++|++++ .++.|.+||..+.+. +.++......
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~---------------------------~~~i~~~~~~--- 103 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF---------------------------EKEISLPPKR--- 103 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE---------------------------EEEEEECTTB---
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE---------------------------EEEEEcCccc---
Confidence 899999999999886 367899999876653 2222211000
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEE-EeecCCCceeeeeeccccccccccCCCCCce
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
.........+++ +++|++|+++.. +++|.+||+.+++.... +..... ..+.+.+.....+ .
T Consensus 104 ---~~~g~~p~~i~~--spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~---~~v~~~p~~~~~~-------~- 167 (361)
T 2oiz_A 104 ---VQGLNYDGLFRQ--TTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC---WSVIPQPNRPRSF-------M- 167 (361)
T ss_dssp ---CCBCCCGGGEEE--CTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE---EEEEECTTSSSEE-------E-
T ss_pred ---cccCCCcceEEE--CCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc---ceeEEcCCCCeeE-------E-
Confidence 000023556888 799999998864 68999999998866543 221110 0011111000000 0
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeE-------EEeCCCCCEEEEe-CCCeEEEEEcCCCcc-eee
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINS-------ISNNSDCETFVSA-DDLRINLWNLEISDQ-CFN 254 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~-------~~~~~~~~~l~~~-~d~~i~iwd~~~~~~-~~~ 254 (457)
....++.+.+++.+... +..... +...+.. +.+++++..++.. .++.|.++|+..... ...
T Consensus 168 -----~~~~dg~~~~v~~~~~g--~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~ 237 (361)
T 2oiz_A 168 -----TICGDGGLLTINLGEDG--KVASQS---RSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDG 237 (361)
T ss_dssp -----EEETTSSEEEEEECTTS--SEEEEE---ECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEE
T ss_pred -----EECCCCcEEEEEECCCC--cEeeec---cccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecc
Confidence 11223456666653211 111000 1001100 1123455566655 788999999873221 111
Q ss_pred eeecCCCc-ccC--CCCceEEEEEecCCccEEEEEcc-----------CCeEEEEEccCCeeeccccccccccccccCcc
Q 012721 255 IVDMKPSN-MDD--LTEVITSAEFHPIYCNLLAYSSS-----------RGFVRLVDMRQSALCDHSARILRDAAESHGSK 320 (457)
Q Consensus 255 ~~~~~~~~-~~~--~~~~i~~v~~~p~~~~~l~~~~~-----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
.+...... ... .......++|+|++ ..++++.. ++.|.+||+.+++.. ..+..
T Consensus 238 ~~~~~~~~~~~~~~~p~g~~~~a~~~dg-~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----~~i~~-------- 304 (361)
T 2oiz_A 238 PWSLLNDEDKAKNWVPGGYNLVGLHRAS-GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----ARIPG-------- 304 (361)
T ss_dssp EEESCCHHHHHTTCEECCSSCEEEETTT-TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----EEEEC--------
T ss_pred cccccCccccccccccCCeeEEEEecCC-CeEEEEEccCCCcccccCCCceEEEEECCCCcEE----EEEec--------
Confidence 11111000 000 00111236899998 55554432 358999999998654 33333
Q ss_pred cceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCc
Q 012721 321 SFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (457)
Q Consensus 321 ~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 397 (457)
+ . ..+++|+|+|++|++++++.|.+||..+ + +.+..+....... ..++++|||.
T Consensus 305 -----~-~-p~~ia~spdg~~l~v~n~~~v~v~D~~t-~~l~~~~~i~~~G~~P---------------~~~~~~p~G~ 360 (361)
T 2oiz_A 305 -----R-D-ALSMTIDQQRNLMLTLDGGNVNVYDISQ-PEPKLLRTIEGAAEAS---------------LQVQFHPVGG 360 (361)
T ss_dssp -----T-T-CCEEEEETTTTEEEEECSSCEEEEECSS-SSCEEEEEETTSCSSE---------------EEEEECCCSC
T ss_pred -----C-C-eeEEEECCCCCEEEEeCCCeEEEEECCC-CcceeeEEeccCCCCc---------------EEEEecCCCC
Confidence 2 2 8899999999999987679999999986 7 7777763322211 4799999985
No 195
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=2.8e-13 Score=126.49 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=108.2
Q ss_pred EEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE-------------------EEEecCCccE
Q 012721 223 SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS-------------------AEFHPIYCNL 282 (457)
Q Consensus 223 ~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-------------------v~~~p~~~~~ 282 (457)
.+.|+|||+.|+.+ .++.|++||+. .++...+.. .+...... +.|+|++ +.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~-~~~~~~~~~-------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg-~~ 155 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLE-TLEEQVIYT-------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT-SW 155 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETT-TCCEEEEEE-------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC-SH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECC-CCCcEEEEe-------cccccCCCCCEEEeccCCccccccccccccCCCC-cc
Confidence 47899999999887 88899999998 454444422 12221111 2456666 44
Q ss_pred EEEE-----ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEcc-CCCeEEEEec-------Cc
Q 012721 283 LAYS-----SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAN-DGQHLLSRDY-------MN 349 (457)
Q Consensus 283 l~~~-----~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~s~~~-------~~ 349 (457)
++.. ..+..|.+||+.+++.. .+. .+...+..+.|+| +++.|+..++ ..
T Consensus 156 ~~~~~~~~~~~~~~l~~~d~~~g~~~----~~~--------------~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~ 217 (396)
T 3c5m_A 156 EKFAEFYHTNPTCRLIKVDIETGELE----VIH--------------QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDAR 217 (396)
T ss_dssp HHHHHHHHTCCCEEEEEEETTTCCEE----EEE--------------EESSCEEEEEEETTEEEEEEEEECSCSSSCSCC
T ss_pred eeeeeeccCCCcceEEEEECCCCcEE----eec--------------cCCcccccceECCCCCCEEEEEecCCCCCCCce
Confidence 4433 35567899998876432 111 1245688999999 7887775432 35
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCC-----CcEEEEecCCCCceeeEEe
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~iw~~~~~~~~~~~~~ 424 (457)
|.+||+.. ++ ...+..+.... .+..++|+|||++|+.++.+ +.|++||+.+++ ......
T Consensus 218 l~~~d~~~-~~-~~~l~~~~~~~-------------~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-~~~l~~ 281 (396)
T 3c5m_A 218 MWLVNEDG-SN-VRKIKEHAEGE-------------SCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE-NEEVMV 281 (396)
T ss_dssp CEEEETTS-CC-CEESSCCCTTE-------------EEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC-EEEEEE
T ss_pred EEEEECCC-Cc-eeEeeccCCCc-------------cccceEECCCCCEEEEEecCCCCccceEEEEECCCCC-eEEeee
Confidence 78888753 33 22332221110 11478999999988877654 449999999883 322222
Q ss_pred cCCCcceeeeecc-CCcceec
Q 012721 425 AGKNENRKPILQA-APRARRS 444 (457)
Q Consensus 425 ~~~~~v~~~~~~p-~~~~~~~ 444 (457)
. .. .. +.|+| ++.....
T Consensus 282 ~-~~-~~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 282 M-PP-CS-HLMSNFDGSLMVG 299 (396)
T ss_dssp C-CS-EE-EEEECSSSSEEEE
T ss_pred C-CC-CC-CCccCCCCceEEE
Confidence 1 11 22 88999 9885554
No 196
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.47 E-value=2.7e-11 Score=106.75 Aligned_cols=220 Identities=9% Similarity=0.004 Sum_probs=152.3
Q ss_pred CCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCc
Q 012721 125 PNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNS 204 (457)
Q Consensus 125 ~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 204 (457)
..+++|++++.|+.|.+||.++|+.+..+.
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~-------------------------------------------------- 32 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYP-------------------------------------------------- 32 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTTEEEEEEE--------------------------------------------------
T ss_pred CCCcEEEeeCCCCEEEEEECCCCeEEEEeC--------------------------------------------------
Confidence 346789999999999999998887654432
Q ss_pred cccccceeeccCCC-CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEE
Q 012721 205 VHARCQKVYPHAHD-FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLL 283 (457)
Q Consensus 205 ~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l 283 (457)
.+. ..+.++.+.|+|++++ +.++.|..||.. .+ .+..+.. +....+.++.+.++| +++
T Consensus 33 -----------~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~~-G~-~~W~~~~------~~~~~~~~~~~~~dG-~~l 91 (276)
T 3no2_A 33 -----------LEKGWECNSVAATKAGEILF-SYSKGAKMITRD-GR-ELWNIAA------PAGCEMQTARILPDG-NAL 91 (276)
T ss_dssp -----------CCTTCCCCEEEECTTSCEEE-ECBSEEEEECTT-SC-EEEEEEC------CTTCEEEEEEECTTS-CEE
T ss_pred -----------CCccCCCcCeEECCCCCEEE-eCCCCEEEECCC-CC-EEEEEcC------CCCccccccEECCCC-CEE
Confidence 121 3577889999999888 556789999984 44 4433211 123467889999999 888
Q ss_pred EEEcc-CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721 284 AYSSS-RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTP 361 (457)
Q Consensus 284 ~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~ 361 (457)
++.+. ++.|..+|. .++.. ..+.. ... ...+......+++.++|+++++... +.|..||.+ ++.
T Consensus 92 v~~~~~~~~v~~vd~-~Gk~l----~~~~~---~~~----~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~--G~~ 157 (276)
T 3no2_A 92 VAWCGHPSTILEVNM-KGEVL----SKTEF---ETG----IERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN--GQL 157 (276)
T ss_dssp EEEESTTEEEEEECT-TSCEE----EEEEE---CCS----CSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT--SCE
T ss_pred EEecCCCCEEEEEeC-CCCEE----EEEec---cCC----CCcccccccCceECCCCCEEEEecCCCEEEEECCC--CCE
Confidence 88776 788888886 44432 11111 000 0111123445678899999998865 999999985 788
Q ss_pred eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC------Ccceeeee
Q 012721 362 VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK------NENRKPIL 435 (457)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~------~~v~~~~~ 435 (457)
+.++...... ..+.+.++|+++++++.+++|..+|..+| +.+..+..+. ..+..+..
T Consensus 158 ~w~~~~~~~~----------------~~~~~~~~g~~~v~~~~~~~v~~~d~~tG-~~~w~~~~~~~~~~~l~~~~~~~~ 220 (276)
T 3no2_A 158 LNSVKLSGTP----------------FSSAFLDNGDCLVACGDAHCFVQLNLESN-RIVRRVNANDIEGVQLFFVAQLFP 220 (276)
T ss_dssp EEEEECSSCC----------------CEEEECTTSCEEEECBTTSEEEEECTTTC-CEEEEEEGGGSBSCCCSEEEEEEE
T ss_pred EEEEECCCCc----------------cceeEcCCCCEEEEeCCCCeEEEEeCcCC-cEEEEecCCCCCCccccccccceE
Confidence 8887765332 47888899999999998889999999999 5555554332 12566666
Q ss_pred ccCCcceeccc
Q 012721 436 QAAPRARRSSL 446 (457)
Q Consensus 436 ~p~~~~~~~~~ 446 (457)
.+++.......
T Consensus 221 ~~~G~i~v~~~ 231 (276)
T 3no2_A 221 LQNGGLYICNW 231 (276)
T ss_dssp CTTSCEEEEEE
T ss_pred cCCCCEEEEec
Confidence 77776666643
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.46 E-value=3.4e-11 Score=109.25 Aligned_cols=225 Identities=12% Similarity=-0.034 Sum_probs=146.1
Q ss_pred cEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccccc
Q 012721 115 KINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENM 194 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (457)
....+.+ .++.++++...++.|.+||..+++....+.
T Consensus 45 ~~~~i~~---~~~~lyv~~~~~~~v~viD~~t~~~~~~i~---------------------------------------- 81 (328)
T 3dsm_A 45 VAQSMVI---RDGIGWIVVNNSHVIFAIDINTFKEVGRIT---------------------------------------- 81 (328)
T ss_dssp CEEEEEE---ETTEEEEEEGGGTEEEEEETTTCCEEEEEE----------------------------------------
T ss_pred cceEEEE---ECCEEEEEEcCCCEEEEEECcccEEEEEcC----------------------------------------
Confidence 3567777 245566666678999999999887654431
Q ss_pred ceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 195 ATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 195 ~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
.......++++++++.+++. .++.|.+||.. ..+....+.... ..+.......+
T Consensus 82 ----------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~-t~~~~~~i~~g~--~~~~~~~p~~i 136 (328)
T 3dsm_A 82 ----------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPK-TYEITGYIECPD--MDMESGSTEQM 136 (328)
T ss_dssp ----------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETT-TTEEEEEEECTT--CCTTTCBCCCE
T ss_pred ----------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECC-CCeEEEEEEcCC--ccccCCCcceE
Confidence 12356788898888766666 89999999998 555554443221 01111244566
Q ss_pred EEecCCccEEEEEc-cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c----
Q 012721 274 EFHPIYCNLLAYSS-SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y---- 347 (457)
Q Consensus 274 ~~~p~~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~---- 347 (457)
++ .++ .++++.. .++.|.++|+.+++.. ..+.. ......+.++|+|++++++. +
T Consensus 137 ~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~----~~i~~--------------g~~p~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 137 VQ-YGK-YVYVNCWSYQNRILKIDTETDKVV----DELTI--------------GIQPTSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp EE-ETT-EEEEEECTTCCEEEEEETTTTEEE----EEEEC--------------SSCBCCCEECTTSEEEEEBCCBCTTC
T ss_pred EE-ECC-EEEEEcCCCCCEEEEEECCCCeEE----EEEEc--------------CCCccceEEcCCCCEEEEECCCccCC
Confidence 66 444 5555554 5899999999987644 22221 12346788999999777653 2
Q ss_pred ------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCcee-
Q 012721 348 ------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGG- 420 (457)
Q Consensus 348 ------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~- 420 (457)
+.|.++|..+ ++....+....+..+ ..++|+||+++|+.+.. .|.+||..+++...
T Consensus 197 ~~~~~~~~v~~id~~t-~~v~~~~~~~~g~~p--------------~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~ 259 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAET-FTVEKQFKFKLGDWP--------------SEVQLNGTRDTLYWINN--DIWRMPVEADRVPVR 259 (328)
T ss_dssp SSCBCCCEEEEEETTT-TEEEEEEECCTTCCC--------------EEEEECTTSCEEEEESS--SEEEEETTCSSCCSS
T ss_pred ccccCCceEEEEECCC-CeEEEEEecCCCCCc--------------eeEEEecCCCEEEEEcc--EEEEEECCCCceeee
Confidence 5799999875 666655543321111 58999999999888765 89999998884321
Q ss_pred eEEecCCCcceeeeeccC-Ccceec
Q 012721 421 ITVEAGKNENRKPILQAA-PRARRS 444 (457)
Q Consensus 421 ~~~~~~~~~v~~~~~~p~-~~~~~~ 444 (457)
..+.........++++|+ +....+
T Consensus 260 ~~~~~~~~~p~gi~vdp~~g~lyva 284 (328)
T 3dsm_A 260 PFLEFRDTKYYGLTVNPNNGEVYVA 284 (328)
T ss_dssp CSBCCCSSCEEEEEECTTTCCEEEE
T ss_pred eeecCCCCceEEEEEcCCCCeEEEE
Confidence 112222456788999994 444444
No 198
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.46 E-value=1.1e-10 Score=104.34 Aligned_cols=233 Identities=9% Similarity=0.056 Sum_probs=147.7
Q ss_pred ceEEEEECCC-CCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 34 IVSAIEFDKT-GDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 34 ~V~~~~~s~~-~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
-.-+..|+++ +.++++...++.|..|+..+++.. .+. ..
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------------~~~-~~----------- 53 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----------------------------RVT-MD----------- 53 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----------------------------EEE-CS-----------
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----------------------------EEe-CC-----------
Confidence 4567889995 456667677889999998766421 111 12
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..+.++++ +++|+++++ . ++.|.+||..+++...+.....
T Consensus 54 -~~~~~i~~--~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~----------------------------------- 93 (297)
T 3g4e_A 54 -APVSSVAL--RQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDN----------------------------------- 93 (297)
T ss_dssp -SCEEEEEE--BTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCT-----------------------------------
T ss_pred -CceEEEEE--CCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCC-----------------------------------
Confidence 56889999 688885554 4 5679999988876544322110
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC---------CeEEEEEcCCCcceeeeeecCCCc
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD---------LRINLWNLEISDQCFNIVDMKPSN 262 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d---------~~i~iwd~~~~~~~~~~~~~~~~~ 262 (457)
......++.++++|+|+++++. .+ ..-.+|.+...+.....
T Consensus 94 ----------------------~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~------- 144 (297)
T 3g4e_A 94 ----------------------DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKY------- 144 (297)
T ss_dssp ----------------------TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEE-------
T ss_pred ----------------------CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEE-------
Confidence 0112357889999999977765 32 33455555433333222
Q ss_pred ccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc--CCeeeccccccccccccccCcccceeccccceEEEEEccCCC
Q 012721 263 MDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR--QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQ 340 (457)
Q Consensus 263 ~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~ 340 (457)
.........++|+|++..++++.+.++.|.+||+. ++.... .+.+.. +..+......++++++|+
T Consensus 145 -~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~----------~~~~~~~p~g~~~d~~G~ 211 (297)
T 3g4e_A 145 -FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK----------LEKEEQIPDGMCIDAEGK 211 (297)
T ss_dssp -EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE----------CCGGGCEEEEEEEBTTSC
T ss_pred -eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE----------CCCCCCCCCeeEECCCCC
Confidence 11234567899999993344666678999999973 443211 011111 111234578899999998
Q ss_pred eEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEEEeC
Q 012721 341 HLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 404 (457)
Q Consensus 341 ~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~ 404 (457)
+.++... +.|..||..+ ++.+..+..+...+ ++++|. ||++.|+..+.
T Consensus 212 lwva~~~~~~v~~~d~~t-G~~~~~i~~p~~~~---------------t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVT-GKRLQTVKLPVDKT---------------TSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEETTTEEEEECTTT-CCEEEEEECSSSBE---------------EEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCEEEEEcCCC-ceEEEEEECCCCCc---------------eEEEEeCCCCCEEEEEcC
Confidence 7777654 8899999875 77777777654332 689998 88776655543
No 199
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.43 E-value=7e-11 Score=103.93 Aligned_cols=224 Identities=8% Similarity=0.008 Sum_probs=145.0
Q ss_pred cEEEEEEEecCCCCEEE-EeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 115 KINRVRWCAAPNGSMFI-LSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 115 ~V~~v~~~~s~~~~~l~-s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
...++++ ++++.+++ +...++.|.+|+..++......
T Consensus 25 ~p~~i~~--~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~---------------------------------------- 62 (270)
T 1rwi_B 25 SPSGVAV--DSAGNVYVTSEGMYGRVVKLATGSTGTTVLP---------------------------------------- 62 (270)
T ss_dssp CEEEEEE--CTTCCEEEEECSSSCEEEEECC-----EECC----------------------------------------
T ss_pred CccceEE--CCCCCEEEEccCCCCcEEEecCCCcccceEe----------------------------------------
Confidence 5788998 68888777 5467889999986554321100
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSA 273 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v 273 (457)
..+...+.+++++++++++++..++.|.+||.. ..... .+ .......+..+
T Consensus 63 ---------------------~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~-~~~~~-~~------~~~~~~~p~~i 113 (270)
T 1rwi_B 63 ---------------------FNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAG-SNNQT-VL------PFDGLNYPEGL 113 (270)
T ss_dssp ---------------------CCSCCSCCCEEECTTCCEEEEETTTEEEEECTT-CSCCE-EC------CCCSCSSEEEE
T ss_pred ---------------------eCCcCCcceeEECCCCCEEEEcCCCEEEEEeCC-CceEe-ee------ecCCcCCCcce
Confidence 122235678999999986555578899999987 33222 21 11223568899
Q ss_pred EEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEE
Q 012721 274 EFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKL 352 (457)
Q Consensus 274 ~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~ 352 (457)
+++++| +++++...++.|.+|+..+.... ... ......+..++++++|+++++... +.|.+
T Consensus 114 ~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~------~~~-----------~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~ 175 (270)
T 1rwi_B 114 AVDTQG-AVYVADRGNNRVVKLAAGSKTQT------VLP-----------FTGLNDPDGVAVDNSGNVYVTDTDNNRVVK 175 (270)
T ss_dssp EECTTC-CEEEEEGGGTEEEEECTTCCSCE------ECC-----------CCSCCSCCCEEECTTCCEEEEEGGGTEEEE
T ss_pred EECCCC-CEEEEECCCCEEEEEECCCceeE------eec-----------cccCCCceeEEEeCCCCEEEEECCCCEEEE
Confidence 999998 88887778899999976543211 000 001235678999999987766654 89999
Q ss_pred EeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCccee
Q 012721 353 WDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRK 432 (457)
Q Consensus 353 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~ 432 (457)
||... .........+... ...++++++|.++++...++.|.+|+.... ........+...+..
T Consensus 176 ~~~~~-~~~~~~~~~~~~~---------------p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~-~~~~~~~~~~~~p~~ 238 (270)
T 1rwi_B 176 LEAES-NNQVVLPFTDITA---------------PWGIAVDEAGTVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLA 238 (270)
T ss_dssp ECTTT-CCEEECCCSSCCS---------------EEEEEECTTCCEEEEETTTSCEEEECTTCS-CCEECCCCSCSCEEE
T ss_pred EecCC-CceEeecccCCCC---------------ceEEEECCCCCEEEEECCCCcEEEEcCCCC-cceeeccCCCCCcee
Confidence 99864 3322111111111 158999999987777777899999998765 322222234456789
Q ss_pred eeeccCCcceec
Q 012721 433 PILQAAPRARRS 444 (457)
Q Consensus 433 ~~~~p~~~~~~~ 444 (457)
+++.|++....+
T Consensus 239 i~~~~~g~l~v~ 250 (270)
T 1rwi_B 239 VAVDSDRTVYVA 250 (270)
T ss_dssp EEECTTCCEEEE
T ss_pred EEECCCCCEEEE
Confidence 999999875555
No 200
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.43 E-value=7.6e-10 Score=101.82 Aligned_cols=255 Identities=11% Similarity=0.043 Sum_probs=152.4
Q ss_pred EECCCCCEEEEEeC--CC---eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccccc
Q 012721 39 EFDKTGDYLAVGDR--GG---RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIE 113 (457)
Q Consensus 39 ~~s~~~~~latg~~--dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 113 (457)
...|+++++.+... .. +|.+||..+++. +..+....
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~---------------------------~~~i~~g~------------ 67 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSI---------------------------LGHVNGGF------------ 67 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeE---------------------------EEEecCCC------------
Confidence 44578887777653 22 789999887663 22232222
Q ss_pred CcEEEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 114 EKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
.+ .+.+ +|++++++.+. .++.|.+||..+.+....+......
T Consensus 68 ~p--~i~~--spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~------------------------ 119 (373)
T 2mad_H 68 LP--NPVA--AHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAP------------------------ 119 (373)
T ss_pred CC--CeEE--CCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCcc------------------------
Confidence 22 7888 79999988875 3678999999877665543321000
Q ss_pred eccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeee-eecC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNI-VDMK 259 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~-~~~~ 259 (457)
+ ..+...-..+.++|||++|+.+ . ++.|.++| . .++.... +...
T Consensus 120 ---------------------------~---~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~-t~~~~~~~i~~~ 167 (373)
T 2mad_H 120 ---------------------------R---FDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q-GGSSDDQLLSSP 167 (373)
T ss_pred ---------------------------c---cccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C-CCCEEeEEcCCC
Confidence 0 0011233478999999999887 3 58899999 7 5555544 3221
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecccc--ccccc------cc----ccc----------
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSA--RILRD------AA----ESH---------- 317 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~------~~----~~~---------- 317 (457)
.++.+.|++...+++.+.||.+.++|. +++...... ..+.. +. ...
T Consensus 168 -----------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 235 (373)
T 2mad_H 168 -----------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGK 235 (373)
T ss_pred -----------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCce
Confidence 124455555455566667777777777 543321000 00000 00 000
Q ss_pred -----------Cccccee----------ccccceEEEEEccCCCeEEEEe-----------cCcEEEEeccCCCCceeEe
Q 012721 318 -----------GSKSFFT----------EIIASISDIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATF 365 (457)
Q Consensus 318 -----------~~~~~~~----------~h~~~v~~~~~s~~g~~l~s~~-----------~~~i~~wd~~~~~~~~~~~ 365 (457)
.....+. -.......+.++|+++.+..+. .+.|.++|+.+ .+.+..+
T Consensus 236 v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t-~~vv~~i 314 (373)
T 2mad_H 236 ILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV-GQTSSQI 314 (373)
T ss_pred EEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC-CEEEEEE
Confidence 0000000 0012233477899988777642 15799999986 7777777
Q ss_pred eeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCCCCceeeE
Q 012721 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~~~~~~~~ 422 (457)
...... ..+.|+|||+ .++++. .++.|.+||+.++ +....
T Consensus 315 ~~g~~p----------------~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~-~vv~~ 356 (373)
T 2mad_H 315 SLGHDV----------------DAISVAQDGGPDLYALSAGTEVLHIYDAGAG-DQDQS 356 (373)
T ss_pred ECCCCc----------------CeEEECCCCCeEEEEEcCCCCeEEEEECCCC-CEEee
Confidence 644433 5899999999 777777 4899999999999 44444
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.43 E-value=3.8e-11 Score=121.53 Aligned_cols=232 Identities=13% Similarity=0.075 Sum_probs=142.5
Q ss_pred CcEEEEEEEecCCCCEEEEeeCC-----CeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 114 EKINRVRWCAAPNGSMFILSTND-----KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..+..++| ||||++|+.++.+ ..|++||+.+++......
T Consensus 163 ~~~~~~~~--SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~---------------------------------- 206 (741)
T 1yr2_A 163 TALDAWAA--SDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL---------------------------------- 206 (741)
T ss_dssp EEEEEEEE--CTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE----------------------------------
T ss_pred EEEEeEEE--CCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC----------------------------------
Confidence 35788999 7999999887543 469999999887643210
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC--------------eEEEEEcCCCcce-
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--------------RINLWNLEISDQC- 252 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~--------------~i~iwd~~~~~~~- 252 (457)
+...+..++|+|| +.|+.+ .++ .|++|++.+....
T Consensus 207 ----------------------------~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~ 257 (741)
T 1yr2_A 207 ----------------------------KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSAD 257 (741)
T ss_dssp ----------------------------EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGC
T ss_pred ----------------------------CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhC
Confidence 0112346789999 888776 544 3899998733221
Q ss_pred eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC-----eEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 253 FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-----FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-----~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
..++. ...+...+..+.|+|+| ++|+..+.++ .|.+||+.++... ....+.. +.
T Consensus 258 ~lv~~-----~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~l~~-------------~~ 316 (741)
T 1yr2_A 258 QPVFA-----TPELPKRGHGASVSSDG-RWVVITSSEGTDPVNTVHVARVTNGKIG--PVTALIP-------------DL 316 (741)
T ss_dssp EEEEC-----CTTCTTCEEEEEECTTS-CEEEEEEECTTCSCCEEEEEEEETTEEC--CCEEEEC-------------SS
T ss_pred EEEec-----cCCCCeEEEEEEECCCC-CEEEEEEEccCCCcceEEEEECCCCCCc--ccEEecC-------------CC
Confidence 22211 12333458899999999 8777776543 8999998775210 0011111 12
Q ss_pred cceEEEEEccCCCeEEEEec-----CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 328 ASISDIKFANDGQHLLSRDY-----MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
..+... ++|+|+.|+..++ +.|.+||+.........+..+.... +..++|+ ++.++++.
T Consensus 317 ~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~--------------l~~~~~~-~~~lv~~~ 380 (741)
T 1yr2_A 317 KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDN--------------LESVGIA-GNRLFASY 380 (741)
T ss_dssp SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSE--------------EEEEEEE-BTEEEEEE
T ss_pred CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCe--------------EEEEEEE-CCEEEEEE
Confidence 233333 3488888876542 5588999864212223332222211 1356776 66788888
Q ss_pred eCCCcEEEEecC-CCCceeeEEec-CCCcceeeeeccCCcceeccccc
Q 012721 403 SYSNLLRIFSHG-VGSAGGITVEA-GKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 403 ~~dg~i~iw~~~-~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
..|+..+||.+. ++ .....+.. +.+.+..+.++|++...+...++
T Consensus 381 ~~dg~~~l~~~~~~g-~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss 427 (741)
T 1yr2_A 381 IHDAKSQVLAFDLDG-KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSS 427 (741)
T ss_dssp EETTEEEEEEEETTS-CEEEECBCSSSCEEEEEECCBTCSCEEEEEEE
T ss_pred EECCEEEEEEEeCCC-CceeeccCCCCeEEEEeecCCCCCEEEEEEcC
Confidence 999988777665 34 34444543 36678888999998776654443
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.42 E-value=9.3e-10 Score=98.13 Aligned_cols=239 Identities=8% Similarity=-0.002 Sum_probs=157.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...+.+++++++|.++++...++.|..|+.+ ++.. . ..+....
T Consensus 56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-------------------------~-~~~~~~~---------- 98 (299)
T 2z2n_A 56 DAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIK-------------------------E-YTLPNPD---------- 98 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-------------------------E-EECSSTT----------
T ss_pred cCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEE-------------------------E-EeCCCcC----------
Confidence 4678999999999988887778889999865 2210 0 0111122
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..+..+++ .+++.++++...++.|.+|+. +++......
T Consensus 99 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~------------------------------------- 136 (299)
T 2z2n_A 99 --SAPYGITE--GPNGDIWFTEMNGNRIGRITD-DGKIREYEL------------------------------------- 136 (299)
T ss_dssp --CCEEEEEE--CTTSCEEEEETTTTEEEEECT-TCCEEEEEC-------------------------------------
T ss_pred --CCceeeEE--CCCCCEEEEecCCceEEEECC-CCCEEEecC-------------------------------------
Confidence 45888998 678877777777888999987 554332110
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
......+..+++.+++.++++. .++.|..||.. +..... . .......+
T Consensus 137 -----------------------~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~ 185 (299)
T 2z2n_A 137 -----------------------PNKGSYPSFITLGSDNALWFTENQNNAIGRITES--GDITEF-K-----IPTPASGP 185 (299)
T ss_dssp -----------------------SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT--CCEEEE-E-----CSSTTCCE
T ss_pred -----------------------CCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcCC--CcEEEe-e-----CCCCCCcc
Confidence 1233467899999999888887 78999999983 333222 1 22334568
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~ 349 (457)
..++++++| .++++...++.|.+||. +++.. .+.. ..+...+.+++++++|++.++.. ++.
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEIT-----EFKI-----------PTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC-CCcEE-----EEEC-----------CCCCCCceeEEECCCCCEEEeccCCce
Confidence 899999998 87777777889999998 55322 1111 11235688999999998766653 489
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
|..||.. ++ +..+....... .+.++++ +++.+.++.. .+.|..++.+++
T Consensus 248 i~~~d~~--g~-~~~~~~~~~~~-------------~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 248 IGRLTSN--NI-IEEYPIQIKSA-------------EPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp EEEEETT--TE-EEEEECSSSSC-------------CEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred EEEECCC--Cc-eEEEeCCCCCC-------------ccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 9999983 33 33332211110 1157888 8888776655 567777887765
No 203
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.40 E-value=1.8e-10 Score=103.35 Aligned_cols=239 Identities=9% Similarity=-0.008 Sum_probs=152.3
Q ss_pred ccccCCceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 28 ELQDVDIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 28 ~~~h~~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
............|+|+|+ +++++..++.|..|+.. ++. ..+..+.
T Consensus 40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~----------------------------~~~~~~~----- 85 (305)
T 3dr2_A 40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV----------------------------DVLLDAT----- 85 (305)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE----------------------------EEEEESC-----
T ss_pred EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE----------------------------EEEeCCC-----
Confidence 334566778899999998 66777788899999863 321 1233333
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
..+..+++ +++|+++++...++.|.+|+.. ++.........
T Consensus 86 -------~~~~gl~~--d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~----------------------------- 126 (305)
T 3dr2_A 86 -------AFTNGNAV--DAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYA----------------------------- 126 (305)
T ss_dssp -------SCEEEEEE--CTTSCEEEEETTTTEEEEECTT-SCEEEEECEET-----------------------------
T ss_pred -------CccceeeE--CCCCCEEEEECCCCEEEEECCC-CCEEEEEeccC-----------------------------
Confidence 55888999 7889876665566889999875 54332211000
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEE----e-C-------------CCeEEEEEcCC
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVS----A-D-------------DLRINLWNLEI 248 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~----~-~-------------d~~i~iwd~~~ 248 (457)
......++.++++|+|+++++ | . .+.|+.||..
T Consensus 127 ----------------------------~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~- 177 (305)
T 3dr2_A 127 ----------------------------GKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD- 177 (305)
T ss_dssp ----------------------------TEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS-
T ss_pred ----------------------------CCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCC-
Confidence 011234678899999998886 3 2 2567777765
Q ss_pred CcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC------CeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 249 SDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR------GFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
.++...+ . .......++|+|++ +.|+.+... +.|.+||+..+.+. ..+.+..
T Consensus 178 ~g~~~~~--------~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l~--~~~~~~~---------- 235 (305)
T 3dr2_A 178 GSPLQRM--------A-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGALH--DRRHFAS---------- 235 (305)
T ss_dssp SCCCEEE--------E-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEEE--EEEEEEC----------
T ss_pred CCcEEEE--------e-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCcc--CCeEEEE----------
Confidence 3333322 1 22456789999999 766666554 78999998765311 0111111
Q ss_pred eeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEE
Q 012721 323 FTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATG 402 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 402 (457)
........++++++|++.++. .+.|.+|+.. ++.+..+..+... .+++|+++++.|..+
T Consensus 236 --~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~--g~~~~~~~~~~~~----------------~~~~f~~d~~~L~it 294 (305)
T 3dr2_A 236 --VPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD--GQLLGHIPTPGTA----------------SNCTFDQAQQRLFIT 294 (305)
T ss_dssp --CSSSCCCSEEECTTSCEEECC-SSEEEEECTT--SCEEEEEECSSCC----------------CEEEECTTSCEEEEE
T ss_pred --CCCCCCCeEEECCCCCEEEec-CCcEEEECCC--CCEEEEEECCCce----------------eEEEEeCCCCEEEEE
Confidence 011334568899999955554 4559999984 6777777655432 589999999888888
Q ss_pred eCCCcEEEEe
Q 012721 403 SYSNLLRIFS 412 (457)
Q Consensus 403 ~~dg~i~iw~ 412 (457)
+.++ ++.++
T Consensus 295 ~~~~-l~~~~ 303 (305)
T 3dr2_A 295 GGPC-LWMLP 303 (305)
T ss_dssp ETTE-EEEEE
T ss_pred cCCe-EEEEE
Confidence 7764 43333
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.40 E-value=4.2e-11 Score=120.05 Aligned_cols=246 Identities=11% Similarity=0.085 Sum_probs=147.1
Q ss_pred cCCceEEEEECCCCCEEEEE-----eCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 31 DVDIVSAIEFDKTGDYLAVG-----DRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 31 h~~~V~~~~~s~~~~~latg-----~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
|...+..++|||||++||.+ +....|++||+.+++.. ...+.+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~--------------------------~~~~~~------ 174 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPL--------------------------ETPLKD------ 174 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEE--------------------------EEEEEE------
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCC--------------------------ccccCC------
Confidence 55679999999999999853 33357999999988742 001111
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCe-------------EEEEEecccceeEEEeecCCCceeeeeecccccc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKT-------------IKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKN 172 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~-------------i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (457)
.....++| + |++.|+.++.+.. |++|++.++.....
T Consensus 175 --------~k~~~~~W--s-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-------------------- 223 (693)
T 3iuj_A 175 --------VKFSGISW--L-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR-------------------- 223 (693)
T ss_dssp --------EESCCCEE--E-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE--------------------
T ss_pred --------ceeccEEE--e-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce--------------------
Confidence 11246789 7 8888888877643 66666554321110
Q ss_pred ccccCCCCCceeccCCccccccceEEEeccCccccccceeeccC-CCCCeeEEEeCCCCCEEEEe-----CCCeEEEEEc
Q 012721 173 FMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHA-HDFNINSISNNSDCETFVSA-----DDLRINLWNL 246 (457)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~ 246 (457)
.+... .. |...+..+.|+|||++|+.. .++.|+++|+
T Consensus 224 ------------------------------------~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~ 266 (693)
T 3iuj_A 224 ------------------------------------LVFGA-IPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDL 266 (693)
T ss_dssp ------------------------------------EEESC-SGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEET
T ss_pred ------------------------------------EEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEEC
Confidence 00000 22 44457789999999988653 2358999999
Q ss_pred CCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---CeEEEEEccCCeeeccccccccccccccCcccce
Q 012721 247 EISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---GFVRLVDMRQSALCDHSARILRDAAESHGSKSFF 323 (457)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
......... +..+....... ++++|..+++....+ +.|..+|+.++... ..+. +
T Consensus 267 ~~~~~~~~~-------l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~-------------l 323 (693)
T 3iuj_A 267 SQENAPLLT-------VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRD-------------L 323 (693)
T ss_dssp TSTTCCCEE-------EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEE-------------E
T ss_pred CCCCCceEE-------EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEE-------------E
Confidence 743322322 23344444444 666663555555543 67899998875321 0011 1
Q ss_pred eccccceEEEEEccCCCeEEEEe--c--CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEE
Q 012721 324 TEIIASISDIKFANDGQHLLSRD--Y--MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHF 399 (457)
Q Consensus 324 ~~h~~~v~~~~~s~~g~~l~s~~--~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 399 (457)
..|...+. .|++++++|+... + ..|++||+. +.....+...... .+..+.+++++..|
T Consensus 324 ~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~--g~~~~~l~~p~~~--------------~~~~~~~~~d~~~l 385 (693)
T 3iuj_A 324 IPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE--GKRVREVALPGLG--------------SVSGFNGKHDDPAL 385 (693)
T ss_dssp ECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT--SCEEEEECCSSSS--------------EEEECCCCTTCSCE
T ss_pred ecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC--CCeeEEeecCCCc--------------eEEeeecCCCCCEE
Confidence 22233443 8899999888653 3 378889886 4444444322211 01356677888766
Q ss_pred EEEeCC----CcEEEEecCCCC
Q 012721 400 ATGSYS----NLLRIFSHGVGS 417 (457)
Q Consensus 400 ~s~~~d----g~i~iw~~~~~~ 417 (457)
+....+ ++|+.||+.+++
T Consensus 386 ~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 386 YFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECSSSCCEEEEECTTTCC
T ss_pred EEEecCCCCCCEEEEEECCCCe
Confidence 655444 789999998873
No 205
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=1.4e-10 Score=104.53 Aligned_cols=227 Identities=11% Similarity=0.041 Sum_probs=148.0
Q ss_pred CcEEEEEEEecCCCCEEEE-------eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceecc
Q 012721 114 EKINRVRWCAAPNGSMFIL-------STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGY 186 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s-------~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (457)
....+++| ++++.++++ ...++.|.+|+..+++...... . .
T Consensus 18 ~~~~~~~~--~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~--~--------------------------- 65 (314)
T 1pjx_A 18 PGAEGPVF--DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-P--E--------------------------- 65 (314)
T ss_dssp TTCEEEEE--CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-C--E---------------------------
T ss_pred CCccCceE--CCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-c--c---------------------------
Confidence 34678999 678877777 5778899999987776543210 0 0
Q ss_pred CCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCC-CCEEEEeCCCeEEEEEcCCCcceeee-eecCCCccc
Q 012721 187 HLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSD-CETFVSADDLRINLWNLEISDQCFNI-VDMKPSNMD 264 (457)
Q Consensus 187 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~ 264 (457)
..++...+.+++++++ ++++++..++.|.+||.+ ++.... .... ..
T Consensus 66 ---------------------------~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~--g~~~~~~~~~~---~~ 113 (314)
T 1pjx_A 66 ---------------------------VNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD--GTFEEIAKKDS---EG 113 (314)
T ss_dssp ---------------------------ETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT--SCEEECCSBCT---TS
T ss_pred ---------------------------cCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC--CCEEEEEeccC---CC
Confidence 0123446889999999 776666655589999987 333222 1100 01
Q ss_pred CCCCceEEEEEecCCccEEEEEccC---------------CeEEEEEccCCeeeccccccccccccccCcccceeccccc
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS 329 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~d---------------g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 329 (457)
.....+.+++++++| +++++...+ +.|..||.. ++.. .... +...
T Consensus 114 ~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~----~~~~--------------~~~~ 173 (314)
T 1pjx_A 114 RRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMI----QVDT--------------AFQF 173 (314)
T ss_dssp CBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEE----EEEE--------------EESS
T ss_pred ccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeEEEECCC-CCEE----Eecc--------------CCCC
Confidence 122457899999999 877776655 567777755 3221 1111 1234
Q ss_pred eEEEEEc----cCCCeEEEE-e-cCcEEEEeccCCCCc-----eeEeeecc-ccccccccccCCCCccccceEEEcCCCc
Q 012721 330 ISDIKFA----NDGQHLLSR-D-YMNLKLWDIRMDSTP-----VATFKIHE-HLRPKLCDLYNNDSIFDKFECSVSGDGL 397 (457)
Q Consensus 330 v~~~~~s----~~g~~l~s~-~-~~~i~~wd~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 397 (457)
...++|+ |+++.|+.+ . ++.|.+||....++. ...+..+. .. ...++++++|+
T Consensus 174 ~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~---------------p~~i~~d~~G~ 238 (314)
T 1pjx_A 174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGG---------------ADGMDFDEDNN 238 (314)
T ss_dssp EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCE---------------EEEEEEBTTCC
T ss_pred cceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCC---------------CCceEECCCCC
Confidence 6788999 999766654 3 389999998622321 11121111 11 14789999999
Q ss_pred EEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCc
Q 012721 398 HFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 398 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
++++...++.|.+||..++ +....+..+...+.+++++|++.
T Consensus 239 l~v~~~~~~~i~~~d~~~g-~~~~~~~~~~~~~~~i~~~~dg~ 280 (314)
T 1pjx_A 239 LLVANWGSSHIEVFGPDGG-QPKMRIRCPFEKPSNLHFKPQTK 280 (314)
T ss_dssp EEEEEETTTEEEEECTTCB-SCSEEEECSSSCEEEEEECTTSS
T ss_pred EEEEEcCCCEEEEEcCCCC-cEeEEEeCCCCCceeEEECCCCC
Confidence 8888888899999999877 44555666667889999999987
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.39 E-value=1.1e-09 Score=102.17 Aligned_cols=269 Identities=10% Similarity=0.052 Sum_probs=159.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
-.....|+|+++++++++...++.|++||.+++... ..... .
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~---------------------------~~~~~-~---------- 171 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT---------------------------TVHPG-F---------- 171 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE---------------------------EEEET-C----------
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE---------------------------Eeecc-C----------
Confidence 357889999999998888777889999998866531 11111 1
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCC--eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDK--TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
.... ++| +++++.|+++..++ .|.+|+...+........
T Consensus 172 --~~~~-ia~--~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~---------------------------------- 212 (409)
T 3hrp_A 172 --KGGK-PAV--TKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQ---------------------------------- 212 (409)
T ss_dssp --CBCB-CEE--CTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEE----------------------------------
T ss_pred --CCCc-eeE--ecCCCcEEEEecCCCceEEEEEcCCCceeEEeee----------------------------------
Confidence 2233 888 78888888887765 687777765543221100
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCC
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTE 268 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 268 (457)
........+.+++++|++..|+.+ .++.|+.||.. .+.. ..+... ...+...
T Consensus 213 -----------------------~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~-~~~~-~~~~~~--~~~g~~~ 265 (409)
T 3hrp_A 213 -----------------------LGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVK-TQEV-TLIKQL--ELSGSLG 265 (409)
T ss_dssp -----------------------CCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETT-TCCE-EEEEEC--CCCSCCC
T ss_pred -----------------------ccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECC-CCCE-EEEecc--cccCCCC
Confidence 001133456789999955555557 88999999998 3332 222000 0111212
Q ss_pred ce-E-EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcc--cceeccccceEEEEEccCCCeEEE
Q 012721 269 VI-T-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSK--SFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 269 ~i-~-~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
.- . .++|+|++..++++-..++.|+.|+..... ..+..+....... ......-.....++++|+|+++++
T Consensus 266 ~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyva 339 (409)
T 3hrp_A 266 TNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIV 339 (409)
T ss_dssp CSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEE
T ss_pred CCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEE
Confidence 22 3 899999542777777788999999976531 1111100000000 000001134789999999997777
Q ss_pred Ee-c-CcEEEEeccCCCCceeEeeeccccccccccccCC-CCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 345 RD-Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN-DSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 345 ~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
-. . +.|+.|++.. +. +..+.++....... +.... ........+++++++.++++-..+++|+.+++
T Consensus 340 d~~~~~~I~~~~~~~-G~-v~~~~g~~~~~g~~-~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 340 DGFKGYCLRKLDILD-GY-VSTVAGQVDVASQI-DGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ETTTTCEEEEEETTT-TE-EEEEEECTTCBSCC-CBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred eCCCCCEEEEEECCC-CE-EEEEeCCCCCCCcC-CCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 66 5 8999999753 43 44444441110000 00000 00111258999999888888888888988775
No 207
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=1.9e-11 Score=111.63 Aligned_cols=192 Identities=9% Similarity=0.064 Sum_probs=126.2
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
..++.+++++...++++|+.++ +++|+++..... +.. -..+|......++
T Consensus 38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~---------~~~--------------------~~~~~~~~~~~~l 87 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDH---------ITS--------------------DSTPLTFKWEKEI 87 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHH---------HHS--------------------SSCCCCCSEEEEC
T ss_pred ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhh---------hcc--------------------ccccccceEEeeC
Confidence 3799999999999999999985 777998754410 000 0000111111222
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
.. |+.|+| ++..|+++ .++.|++||+.........
T Consensus 88 p~-V~~l~f----d~~~L~v~-~~~~l~v~dv~sl~~~~~~--------------------------------------- 122 (388)
T 1xip_A 88 PD-VIFVCF----HGDQVLVS-TRNALYSLDLEELSEFRTV--------------------------------------- 122 (388)
T ss_dssp TT-EEEEEE----ETTEEEEE-ESSEEEEEESSSTTCEEEE---------------------------------------
T ss_pred CC-eeEEEE----CCCEEEEE-cCCcEEEEEchhhhccCcc---------------------------------------
Confidence 26 999999 67788888 8899999998765422111
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceE
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVIT 271 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (457)
..|...+.++.+.+.. ++++ .||.|.+||+. .+.... +...|+
T Consensus 123 ----------------------~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~-~~~~~~-----------~~~~Vs 166 (388)
T 1xip_A 123 ----------------------TSFEKPVFQLKNVNNT--LVILNSVNDLSALDLR-TKSTKQ-----------LAQNVT 166 (388)
T ss_dssp ----------------------EECSSCEEEEEECSSE--EEEEETTSEEEEEETT-TCCEEE-----------EEESEE
T ss_pred ----------------------ceeecceeeEEecCCC--EEEEECCCCEEEEEcc-CCcccc-----------ccCCce
Confidence 2344456777665442 7777 99999999998 444332 235799
Q ss_pred EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 272 SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
|++|+|+| ++.|..||++++|+....+...+ +.+.. .+.. ..-.+|...|.++.|.++++++++
T Consensus 167 ~v~WSpkG---~~vg~~dg~i~~~~~~~~~~~~k--~~I~~---Pp~~-~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 167 SFDVTNSQ---LAVLLKDRSFQSFAWRNGEMEKQ--FEFSL---PSEL-EELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EEEECSSE---EEEEETTSCEEEEEEETTEEEEE--EEECC---CHHH-HTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEEEcCCc---eEEEEcCCcEEEEcCCCcccccc--ceecC---Cccc-ccccCCCeeEEEEEEecCCeEEEE
Confidence 99999998 67788999999998877652100 11111 0000 000135678999999999999986
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.38 E-value=1.3e-09 Score=99.19 Aligned_cols=273 Identities=12% Similarity=0.047 Sum_probs=163.6
Q ss_pred EEECCCCCEEEEEeC-----CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 38 IEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 38 ~~~s~~~~~latg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
....|+++.+++... ++.|.++|..+.+. +.++..-.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v---------------------------~~~I~vG~----------- 79 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRV---------------------------IGMIDGGF----------- 79 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEE---------------------------EEEEEECS-----------
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeE---------------------------EEEEECCC-----------
Confidence 456799988888765 67899999887763 23333222
Q ss_pred cCcEEEEEEEecCCCCEEEEee----------CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCc
Q 012721 113 EEKINRVRWCAAPNGSMFILST----------NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s----------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
.+ . +.+ +|+|++++++. .++.|.+||..+++....+.......
T Consensus 80 -~P-~-va~--spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r---------------------- 132 (386)
T 3sjl_D 80 -LP-N-PVV--ADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---------------------- 132 (386)
T ss_dssp -SC-E-EEE--CTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----------------------
T ss_pred -CC-c-EEE--CCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc----------------------
Confidence 33 3 888 89999887765 36789999999988766554321000
Q ss_pred eeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeeeeecC
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
......-..++++|||++++.+ . ++.|.++|+. ..+.+..+.+.
T Consensus 133 --------------------------------~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~-t~~vv~tI~v~ 179 (386)
T 3sjl_D 133 --------------------------------FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE-GKAFKRMLDVP 179 (386)
T ss_dssp --------------------------------CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT-TTEEEEEEECC
T ss_pred --------------------------------cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC-CCcEEEEEECC
Confidence 0011234578999999998876 3 6899999999 56666654322
Q ss_pred CCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC-Ceeeccccccccc-------cc--cccCcccc-------
Q 012721 260 PSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRD-------AA--ESHGSKSF------- 322 (457)
Q Consensus 260 ~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~-------~~--~~~~~~~~------- 322 (457)
+ +....|.+...+++.+.||.+.+.++.. ++........+.. +. ..+..+..
T Consensus 180 -----g------~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~ 248 (386)
T 3sjl_D 180 -----D------CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGK 248 (386)
T ss_dssp -----S------EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSE
T ss_pred -----C------cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCE
Confidence 1 1122343334555666666666666654 3321100001100 00 00000000
Q ss_pred ---eec-----------------------cccceEEEEEccCCCeEEEEe-----------cCcEEEEeccCCCCceeEe
Q 012721 323 ---FTE-----------------------IIASISDIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATF 365 (457)
Q Consensus 323 ---~~~-----------------------h~~~v~~~~~s~~g~~l~s~~-----------~~~i~~wd~~~~~~~~~~~ 365 (457)
+.. .......++++++++.++... .+.|.+.|+.+ .+.+..+
T Consensus 249 V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t-~kv~~~i 327 (386)
T 3sjl_D 249 IHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT-GERLAKF 327 (386)
T ss_dssp EEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEE
T ss_pred EEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC-CeEEEEE
Confidence 000 011222366677777666542 14688888876 6777776
Q ss_pred eeccccccccccccCCCCccccceEEEcCCCc-EEEEEe-CCCcEEEEecCCCCceeeEEecCCCcceeeeeccC
Q 012721 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAA 438 (457)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~ 438 (457)
...... .++.+++|++ +|++.. .++.|.++|..++ +....+.. .+.-+.+.+++|
T Consensus 328 ~vg~~~----------------~~lavs~D~~~~ly~tn~~~~~VsViD~~t~-k~~~~i~~-~~~p~~l~~s~d 384 (386)
T 3sjl_D 328 EMGHEI----------------DSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVNQ-LGHGPQVITTAD 384 (386)
T ss_dssp EEEEEE----------------CEEEECSSSSCEEEEEETTTTEEEEEETTTC-CEEEEECC-CCSSCCEEEECC
T ss_pred ECCCCc----------------ceEEECCCCCeEEEEEcCCCCeEEEEECCCC-cEEEEecC-CCCCceeEECCc
Confidence 654332 5899999996 666654 4899999999999 55555543 455667777777
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=6.9e-10 Score=99.10 Aligned_cols=184 Identities=7% Similarity=0.047 Sum_probs=117.2
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---------
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------- 289 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--------- 289 (457)
..+.+++++++++++++. ++.|.+||.+ .+....+.... .......+..++++|+| +++++....
T Consensus 54 ~~~~~i~~~~dG~l~v~~-~~~l~~~d~~-~g~~~~~~~~~---~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI-GTKFCALNWK-EQSAVVLATVD---NDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE-TTEEEEEETT-TTEEEEEEECC---TTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEEE-CCeEEEEECC-CCcEEEEEecC---CCCCCCCCCCEEECCCC-CEEEecCCcccccccccC
Confidence 468899999999955544 5689999987 44433322111 01123457899999999 766654321
Q ss_pred CeEEEEEccCC-eeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE-ec-CcEEEEecc-CCCCce--e
Q 012721 290 GFVRLVDMRQS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR-DY-MNLKLWDIR-MDSTPV--A 363 (457)
Q Consensus 290 g~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~-~~-~~i~~wd~~-~~~~~~--~ 363 (457)
..-.||.+... +.. .... +......++|+|+++.|+.+ +. +.|.+|++. ..+... .
T Consensus 128 ~~~~l~~~d~~g~~~----~~~~--------------~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~ 189 (297)
T 3g4e_A 128 HQGALYSLFPDHHVK----KYFD--------------QVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRR 189 (297)
T ss_dssp TCEEEEEECTTSCEE----EEEE--------------EESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEE
T ss_pred CCcEEEEEECCCCEE----EEee--------------ccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcE
Confidence 22344444322 111 1111 12346789999999987655 33 899999974 223321 1
Q ss_pred Ee---eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec-cCC
Q 012721 364 TF---KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ-AAP 439 (457)
Q Consensus 364 ~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~-p~~ 439 (457)
.+ ..+.... ..+++.++|++.++....+.|.+||..++ +....+..+...+.+++|. |++
T Consensus 190 ~~~~~~~~~~~p---------------~g~~~d~~G~lwva~~~~~~v~~~d~~tG-~~~~~i~~p~~~~t~~~f~g~d~ 253 (297)
T 3g4e_A 190 SVYKLEKEEQIP---------------DGMCIDAEGKLWVACYNGGRVIRLDPVTG-KRLQTVKLPVDKTTSCCFGGKNY 253 (297)
T ss_dssp EEEECCGGGCEE---------------EEEEEBTTSCEEEEEETTTEEEEECTTTC-CEEEEEECSSSBEEEEEEESGGG
T ss_pred EEEECCCCCCCC---------------CeeEECCCCCEEEEEcCCCEEEEEcCCCc-eEEEEEECCCCCceEEEEeCCCC
Confidence 11 1111111 47899999998888878889999999988 6677777777789999998 776
Q ss_pred cce
Q 012721 440 RAR 442 (457)
Q Consensus 440 ~~~ 442 (457)
...
T Consensus 254 ~~L 256 (297)
T 3g4e_A 254 SEM 256 (297)
T ss_dssp CEE
T ss_pred CEE
Confidence 543
No 210
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.34 E-value=2.2e-09 Score=99.34 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=64.1
Q ss_pred EEEEccCCCeEEEEe-----------cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EE
Q 012721 332 DIKFANDGQHLLSRD-----------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HF 399 (457)
Q Consensus 332 ~~~~s~~g~~l~s~~-----------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l 399 (457)
.++++|+++.++... .+.|.++|..+ .+.+..+...... ..+.|+||++ ++
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T-~kvv~~I~vg~~P----------------~gia~spDg~~~l 385 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET-GERINKIELGHEI----------------DSINVSQDAEPLL 385 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT-CCEEEEEEEEEEE----------------CEEEECCSSSCEE
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCC-CeEEEEEECCCCc----------------CeEEEccCCCEEE
Confidence 468999988776542 24799999986 7888887655433 5899999999 88
Q ss_pred EEEe-CCCcEEEEecCCCCceeeEE-ecCCCcceeeeeccCC
Q 012721 400 ATGS-YSNLLRIFSHGVGSAGGITV-EAGKNENRKPILQAAP 439 (457)
Q Consensus 400 ~s~~-~dg~i~iw~~~~~~~~~~~~-~~~~~~v~~~~~~p~~ 439 (457)
++.. .++.|.++|+.++ +....+ ..-..| .+..+||.
T Consensus 386 yv~n~~s~~VsVID~~t~-kvv~tI~~vG~~P--~~i~~~~~ 424 (426)
T 3c75_H 386 YALSAGTQTLHIYDAATG-EELRSVDQLGRGP--QIITTHDM 424 (426)
T ss_dssp EEEETTTTEEEEEETTTC-CEEEEECCCSSSC--CEEECCCC
T ss_pred EEEcCCCCeEEEEECCCC-CEEEEecCCCCCC--cEEEcCCC
Confidence 8888 4899999999999 555554 222222 25666653
No 211
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=4.6e-10 Score=102.45 Aligned_cols=266 Identities=7% Similarity=-0.001 Sum_probs=160.1
Q ss_pred CceEEEEECCCCCEEEEEe--CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGD--RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSL 110 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 110 (457)
..+..++++++|+++++.. .++.++||.+++++.. .-|... ....+|.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-------------------~~p~~~--~~~~~~~--------- 66 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-------------------PFPPQS--GNAIITF--------- 66 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-------------------ESCCCC--SSCCCCC---------
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-------------------cCCCcc--cCcccce---------
Confidence 5789999999999998864 2343677777633321 000000 0111222
Q ss_pred cccCcEEEEEEEecCCCCEEEEeeC-----CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 111 EIEEKINRVRWCAAPNGSMFILSTN-----DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 111 ~~~~~V~~v~~~~s~~~~~l~s~s~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
..+..+++ ++++.++++-.. ++.|.+||+.+++....+......
T Consensus 67 ---~~p~gv~~--d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~-------------------------- 115 (343)
T 2qe8_A 67 ---DTVLGIKS--DGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPI-------------------------- 115 (343)
T ss_dssp ---SCEEEEEE--CSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTT--------------------------
T ss_pred ---eEeeEEEE--cCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhh--------------------------
Confidence 57899999 678866555433 578999999888765544322100
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-----CCCeEEEEEcCCCcceeeeeecCC
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-----DDLRINLWNLEISDQCFNIVDMKP 260 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-----~d~~i~iwd~~~~~~~~~~~~~~~ 260 (457)
..+...+..+++++++..++.+ .++.|.+||+. .++..+.+
T Consensus 116 -----------------------------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~-~g~~~r~~---- 161 (343)
T 2qe8_A 116 -----------------------------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQ-TGLAARVL---- 161 (343)
T ss_dssp -----------------------------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETT-TCCEEEEC----
T ss_pred -----------------------------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECC-CCCEEEEe----
Confidence 1233456789998865555444 36899999998 55555442
Q ss_pred CcccCCCCceE-EEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCC
Q 012721 261 SNMDDLTEVIT-SAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG 339 (457)
Q Consensus 261 ~~~~~~~~~i~-~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g 339 (457)
.+|..... ...+.++| ..+.+.+.+|.++.|. ..+..++|+|+|
T Consensus 162 ---~~~~~~~~~~~~~~~~g-~~~~~~~~~g~~~~~~-------------------------------~~~~gia~s~dg 206 (343)
T 2qe8_A 162 ---QGYPGIAPEDIDLVIDG-VPVQIGQPDGTVIRPH-------------------------------LGVNGIVLDAEN 206 (343)
T ss_dssp ---TTCTTTSCCSCCCEETT-EECBEECTTSCEECCC-------------------------------CCEEEEEECTTS
T ss_pred ---cCCCcccccccceeECC-EEEEeccCCCceecee-------------------------------cccceeEeccCC
Confidence 22211100 13455677 6777777777765542 135779999999
Q ss_pred CeEEEEec--CcEEEEeccC--CCC-----cee--EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcE
Q 012721 340 QHLLSRDY--MNLKLWDIRM--DST-----PVA--TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLL 408 (457)
Q Consensus 340 ~~l~s~~~--~~i~~wd~~~--~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i 408 (457)
+.|+.++. ..+..++... .+. ... ...++.... ..++++++|.++++...++.|
T Consensus 207 ~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~p---------------dgia~d~~G~l~va~~~~~~V 271 (343)
T 2qe8_A 207 EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPIC---------------DGISIDKDHNIYVGDLAHSAI 271 (343)
T ss_dssp CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSC---------------SCEEECTTCCEEEEEGGGTEE
T ss_pred CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCC---------------ceEEECCCCCEEEEccCCCeE
Confidence 98887754 4555554321 011 000 111121111 369999999999998889999
Q ss_pred EEEecCCCCceeeEEec-CCCcceeeeeccCCcceec
Q 012721 409 RIFSHGVGSAGGITVEA-GKNENRKPILQAAPRARRS 444 (457)
Q Consensus 409 ~iw~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~~~ 444 (457)
.+||..++ +....... +......+++.|++.....
T Consensus 272 ~~~d~~~G-~~~~~~~~~~~~~p~~va~~~~g~l~v~ 307 (343)
T 2qe8_A 272 GVITSADR-AYKLLVTDEKLSWTDSFNFGSDGYLYFD 307 (343)
T ss_dssp EEEETTTT-EEEEEEECGGGSCEEEEEECTTSCEEEE
T ss_pred EEEECCCC-CEEEEEECCceecCCeeEECCCCcEEEE
Confidence 99998566 33333322 2455788999988765554
No 212
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.32 E-value=6.7e-11 Score=107.98 Aligned_cols=145 Identities=8% Similarity=0.021 Sum_probs=96.9
Q ss_pred CCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721 216 AHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 216 ~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
.+.. |+.++| ++.+|+++.++.|++||+....+.. . ...|...+.++.+.+. .++++..||.|.+|
T Consensus 86 ~lp~-V~~l~f--d~~~L~v~~~~~l~v~dv~sl~~~~-~-------~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~ 151 (388)
T 1xip_A 86 EIPD-VIFVCF--HGDQVLVSTRNALYSLDLEELSEFR-T-------VTSFEKPVFQLKNVNN---TLVILNSVNDLSAL 151 (388)
T ss_dssp ECTT-EEEEEE--ETTEEEEEESSEEEEEESSSTTCEE-E-------EEECSSCEEEEEECSS---EEEEEETTSEEEEE
T ss_pred eCCC-eeEEEE--CCCEEEEEcCCcEEEEEchhhhccC-c-------cceeecceeeEEecCC---CEEEEECCCCEEEE
Confidence 3455 999999 8999999988999999998433222 1 2345566777766543 38888999999999
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCc--eeEeeecccccc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTP--VATFKIHEHLRP 373 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~--~~~~~~~~~~~~ 373 (457)
|+..+... . +...|++++|||+| +.+...+|.+++|+... ... ...+........
T Consensus 152 dl~~~~~~----~-----------------~~~~Vs~v~WSpkG-~~vg~~dg~i~~~~~~~-~~~~~k~~I~~Pp~~~~ 208 (388)
T 1xip_A 152 DLRTKSTK----Q-----------------LAQNVTSFDVTNSQ-LAVLLKDRSFQSFAWRN-GEMEKQFEFSLPSELEE 208 (388)
T ss_dssp ETTTCCEE----E-----------------EEESEEEEEECSSE-EEEEETTSCEEEEEEET-TEEEEEEEECCCHHHHT
T ss_pred EccCCccc----c-----------------ccCCceEEEEcCCc-eEEEEcCCcEEEEcCCC-ccccccceecCCccccc
Confidence 99976432 1 12579999999999 33344569999998864 332 334422110000
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+.+.-+.|.++.|.+++.++++-.
T Consensus 209 ------~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 209 ------LPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp ------SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred ------ccCCCeeEEEEEEecCCeEEEEEc
Confidence 000112347999999999998743
No 213
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.31 E-value=9.1e-09 Score=91.68 Aligned_cols=237 Identities=8% Similarity=-0.005 Sum_probs=154.4
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
...+.+++++++|++.++...++.|..|+.. ++.. ...+....
T Consensus 61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~--------------------------~~~~~~~~---------- 103 (300)
T 2qc5_A 61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT--------------------------EYPLPQPD---------- 103 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--------------------------EEECSSTT----------
T ss_pred CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE--------------------------EecCCCCC----------
Confidence 3678999999999988877767889999876 3320 01111112
Q ss_pred ccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccc
Q 012721 112 IEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWT 191 (457)
Q Consensus 112 ~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (457)
..+.++++ .+++.++++...++.|..|+.. ++..... .
T Consensus 104 --~~~~~i~~--~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~-~------------------------------------ 141 (300)
T 2qc5_A 104 --SGPYGITE--GLNGDIWFTQLNGDRIGKLTAD-GTIYEYD-L------------------------------------ 141 (300)
T ss_dssp --CCEEEEEE--CSTTCEEEEETTTTEEEEECTT-SCEEEEE-C------------------------------------
T ss_pred --CCCccceE--CCCCCEEEEccCCCeEEEECCC-CCEEEcc-C------------------------------------
Confidence 45788988 6788877777667889888876 5433211 0
Q ss_pred cccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCce
Q 012721 192 ENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVI 270 (457)
Q Consensus 192 ~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i 270 (457)
......+..+++.++++++++. .++.|..||.. +..... . .......+
T Consensus 142 -----------------------~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--g~~~~~-~-----~~~~~~~~ 190 (300)
T 2qc5_A 142 -----------------------PNKGSYPAFITLGSDNALWFTENQNNSIGRITNT--GKLEEY-P-----LPTNAAAP 190 (300)
T ss_dssp -----------------------SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT--CCEEEE-E-----CSSTTCCE
T ss_pred -----------------------CCCCCCceeEEECCCCCEEEEecCCCeEEEECCC--CcEEEe-e-----CCCCCCCc
Confidence 1223467889999999977777 68899999984 333222 1 22344568
Q ss_pred EEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-Cc
Q 012721 271 TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MN 349 (457)
Q Consensus 271 ~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~ 349 (457)
..++++++| .++++....+.|.+||. .++.. .+.. ..+...+.+++++++|++.++... +.
T Consensus 191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~-----~~~~-----------~~~~~~~~~i~~d~~g~l~v~~~~~~~ 252 (300)
T 2qc5_A 191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEIS-----EYDI-----------PTPNARPHAITAGKNSEIWFTEWGANQ 252 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCEE-----EEEC-----------SSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred ceEEECCCC-CEEEEccCCCEEEEEcC-CCcEE-----EEEC-----------CCCCCCceEEEECCCCCEEEeccCCCe
Confidence 899999998 88877777888999998 33221 1111 011346789999999986666644 89
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
|..||.. ++.. .+....... .+.++++.++|.+.++.. . .|..++.+
T Consensus 253 i~~~~~~--g~~~-~~~~~~~~~-------------~~~~i~~~~~g~l~v~~~-~-~i~~~~p~ 299 (300)
T 2qc5_A 253 IGRITND--NTIQ-EYQLQTENA-------------EPHGITFGKDGSVWFALK-C-KIGKLNLN 299 (300)
T ss_dssp EEEECTT--SCEE-EEECCSTTC-------------CCCCEEECTTSCEEEECS-S-EEEEEEEC
T ss_pred EEEECCC--CcEE-EEECCccCC-------------ccceeEeCCCCCEEEEcc-C-ceEEeCCC
Confidence 9999973 3322 332211100 115799999998666555 4 67777653
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.30 E-value=2.6e-09 Score=96.72 Aligned_cols=228 Identities=11% Similarity=0.017 Sum_probs=141.1
Q ss_pred ceEEEEECCCC-CEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 34 IVSAIEFDKTG-DYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 34 ~V~~~~~s~~~-~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
-.....|+|++ .++++...++.|..|+..+++.. .+. ..
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----------------------------~~~-~~----------- 89 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----------------------------VHA-LP----------- 89 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----------------------------EEE-CS-----------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----------------------------EEE-CC-----------
Confidence 34678999974 56666667889999998765421 111 12
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..+.++.| +++|.++++. .+ .|.+||..+++.........
T Consensus 90 -~~v~~i~~--~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~----------------------------------- 129 (326)
T 2ghs_A 90 -FMGSALAK--ISDSKQLIAS-DD-GLFLRDTATGVLTLHAELES----------------------------------- 129 (326)
T ss_dssp -SCEEEEEE--EETTEEEEEE-TT-EEEEEETTTCCEEEEECSST-----------------------------------
T ss_pred -CcceEEEE--eCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCC-----------------------------------
Confidence 45889999 5678666654 44 48899988776543321000
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccC
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~ 265 (457)
......++.++++|+|+++++. .+ +.|..++ .++.... ..
T Consensus 130 ----------------------~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~---~g~~~~~--------~~ 176 (326)
T 2ghs_A 130 ----------------------DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA---KGKVTKL--------FA 176 (326)
T ss_dssp ----------------------TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE---TTEEEEE--------EE
T ss_pred ----------------------CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe---CCcEEEe--------eC
Confidence 0112357889999999977765 32 4555555 3433222 11
Q ss_pred CCCceEEEEEecCCccEE-EEEccCCeEEEEEcc--CC-eeeccccccccccccccCcccceeccccceEEEEEccCCCe
Q 012721 266 LTEVITSAEFHPIYCNLL-AYSSSRGFVRLVDMR--QS-ALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQH 341 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l-~~~~~dg~i~lwd~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~ 341 (457)
.......++|+|++ +.| ++.+.++.|.+||+. ++ +... .+.+.. +.........++++++|.+
T Consensus 177 ~~~~~~~i~~s~dg-~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~----------~~~~~~~p~gi~~d~~G~l 243 (326)
T 2ghs_A 177 DISIPNSICFSPDG-TTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID----------STGIKGGMDGSVCDAEGHI 243 (326)
T ss_dssp EESSEEEEEECTTS-CEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE----------CTTSSSEEEEEEECTTSCE
T ss_pred CCcccCCeEEcCCC-CEEEEEECCCCEEEEEEcccccCCcccC--ceEEEE----------CCCCCCCCCeeEECCCCCE
Confidence 22346789999999 655 455567899999986 44 2111 011111 0111234678999999987
Q ss_pred EEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc-CCCcEEEEEeC
Q 012721 342 LLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS-GDGLHFATGSY 404 (457)
Q Consensus 342 l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~ 404 (457)
.++... +.|..||.. ++.+..+..+...+ ++++|+ +++..|+.++.
T Consensus 244 wva~~~~~~v~~~d~~--g~~~~~i~~~~~~~---------------~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 244 WNARWGEGAVDRYDTD--GNHIARYEVPGKQT---------------TCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEETTTEEEEECTT--CCEEEEEECSCSBE---------------EEEEEESTTSCEEEEEEB
T ss_pred EEEEeCCCEEEEECCC--CCEEEEEECCCCCc---------------EEEEEecCCCCEEEEEec
Confidence 776644 889999983 66666665544322 689998 88876655544
No 215
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.28 E-value=2e-09 Score=100.46 Aligned_cols=242 Identities=10% Similarity=0.036 Sum_probs=145.6
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
.....|+| +++++++++...++.|++||..++.......
T Consensus 131 ~~P~~la~--d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~--------------------------------------- 169 (409)
T 3hrp_A 131 KYMWGIAA--VGNNTVLAYQRDDPRVRLISVDDNKVTTVHP--------------------------------------- 169 (409)
T ss_dssp CCEEEEEE--CSTTEEEEEETTTTEEEEEETTTTEEEEEEE---------------------------------------
T ss_pred CCceEEEE--eCCCCEEEEecCCCcEEEEECCCCEEEEeec---------------------------------------
Confidence 45788999 6888877777778999999998776554321
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccC-CCCc
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDD-LTEV 269 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~ 269 (457)
. ..... ++|+++++.|+++ .++ .|.+|+... +.....+. .+.. ....
T Consensus 170 ----------------------~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~-~~~~~~~g----~~~~~~~~~ 220 (409)
T 3hrp_A 170 ----------------------G-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKAS-GWAPTRIG----QLGSTFSGK 220 (409)
T ss_dssp ----------------------T-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGG-TTCEEEEE----ECCTTSCSC
T ss_pred ----------------------c-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCC-CceeEEee----eccchhcCC
Confidence 1 11223 8899999988887 544 899998873 32222210 0111 3456
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccc--eEEEEEccCCCeEE-EEe
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIAS--ISDIKFANDGQHLL-SRD 346 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~s~~g~~l~-s~~ 346 (457)
+.+++++|++ ..|+++..++.|+.||..++.. ..+.. ... .++... ...++|+|++..|. +..
T Consensus 221 p~~iav~p~~-g~lyv~d~~~~I~~~d~~~~~~-----~~~~~-~~~-------~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 221 IGAVALDETE-EWLYFVDSNKNFGRFNVKTQEV-----TLIKQ-LEL-------SGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp CCBCEECTTS-SEEEEECTTCEEEEEETTTCCE-----EEEEE-CCC-------CSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred cEEEEEeCCC-CeEEEEECCCcEEEEECCCCCE-----EEEec-ccc-------cCCCCCCccccEEEeCCCCEEEEEeC
Confidence 7889999954 3444477789999999987642 12211 000 001111 23899999644554 444
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCceeeEEe
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~ 424 (457)
. +.|+.|+.. +. +..+.++.....................++++|+|+++++-. .+++|+.|++.++ . ..++.
T Consensus 287 ~~~~I~~~~~~--g~-~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G-~-v~~~~ 361 (409)
T 3hrp_A 287 NLSSVYKITPD--GE-CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG-Y-VSTVA 361 (409)
T ss_dssp TTTEEEEECTT--CC-EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT-E-EEEEE
T ss_pred CCCEEEEEecC--CC-EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC-E-EEEEe
Confidence 4 889999875 33 333433320000000000000000125899999999877777 7899999998877 2 44455
Q ss_pred cC---------------CCcceeeeeccCCcceec
Q 012721 425 AG---------------KNENRKPILQAAPRARRS 444 (457)
Q Consensus 425 ~~---------------~~~v~~~~~~p~~~~~~~ 444 (457)
++ ......+++.|++.....
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVa 396 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIA 396 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEE
Confidence 44 245678888888766555
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.27 E-value=1.3e-09 Score=99.20 Aligned_cols=263 Identities=12% Similarity=0.118 Sum_probs=146.1
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccc
Q 012721 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDY 106 (457)
Q Consensus 37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 106 (457)
.++++|||++|++++ .++.|.+||..+.+.. .++.-...
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~---------------------------~~I~v~~g---- 130 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPT---------------------------ADIELPDA---- 130 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTC----
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEE---------------------------EEEECCCc----
Confidence 499999999887765 3578999999887642 22210000
Q ss_pred cccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCcee
Q 012721 107 LKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAH 184 (457)
Q Consensus 107 ~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (457)
+.......-..+.| +++|++++++.. ++.|.++|+.+++....+..... ...+......++ ..
T Consensus 131 -~r~~~g~~P~~~a~--spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P~g~~~~~--------~~ 195 (386)
T 3sjl_D 131 -PRFLVGTYPWMTSL--TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFPTAPDTFF--------MH 195 (386)
T ss_dssp -CCCCBSCCGGGEEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEE--------EE
T ss_pred -cccccCCCCceEEE--cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeecCCCceeE--------EE
Confidence 00000012345788 799999888764 68999999999988777654321 011110000011 11
Q ss_pred ccCCccccccceEEEeccCccccccce-eeccCCCCCee-EEEe-CCCCCEEEEeCCCeEEEEEcCCCcc-eeeeeec-C
Q 012721 185 GYHLEWTENMATKIANVGNSVHARCQK-VYPHAHDFNIN-SISN-NSDCETFVSADDLRINLWNLEISDQ-CFNIVDM-K 259 (457)
Q Consensus 185 ~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~h~~~v~-~~~~-~~~~~~l~~~~d~~i~iwd~~~~~~-~~~~~~~-~ 259 (457)
. .++.+.+.+........... ..+.....++. ...| .++|++++.+.++.|++.|+..... ....+.+ .
T Consensus 196 ~------~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 196 C------RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp E------TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred C------CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccc
Confidence 1 12233333332211100000 01011112222 2355 4688777766889999999973221 1211110 0
Q ss_pred CCcc-cC-CCCceEEEEEecCCccEEEEEcc----------CCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 260 PSNM-DD-LTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 260 ~~~~-~~-~~~~i~~v~~~p~~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
.... .+ ..+....+++++++ +.++.... .+.|.++|+.+++.. +.+.. .
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~-~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~----~~i~v--------------g 330 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRAL-DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL----AKFEM--------------G 330 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTT-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE--------------E
T ss_pred cccccccccCCCcceeeECCCC-CeEEEEeccccccccCCCCCEEEEEECCCCeEE----EEEEC--------------C
Confidence 0000 00 11223356778988 65555432 257999999998755 33332 2
Q ss_pred cceEEEEEccCCC-eEEEEe--cCcEEEEeccCCCCceeEeeecccc
Q 012721 328 ASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 328 ~~v~~~~~s~~g~-~l~s~~--~~~i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
..++.|.+++|++ +|++.+ ++.|.++|..+ ++.+.++......
T Consensus 331 ~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t-~k~~~~i~~~~~p 376 (386)
T 3sjl_D 331 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES-GEELRSVNQLGHG 376 (386)
T ss_dssp EEECEEEECSSSSCEEEEEETTTTEEEEEETTT-CCEEEEECCCCSS
T ss_pred CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC-CcEEEEecCCCCC
Confidence 3688999999997 666654 49999999986 8888888765554
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.25 E-value=5.6e-09 Score=94.48 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=114.1
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc------CCeE
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS------RGFV 292 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~------dg~i 292 (457)
..+.+++++++++++++..+ .|.+||.. .+....+.... .......+.+++++|+| +++++... .+.|
T Consensus 90 ~~v~~i~~~~dg~l~v~~~~-gl~~~d~~-~g~~~~~~~~~---~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l 163 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIASDD-GLFLRDTA-TGVLTLHAELE---SDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSI 163 (326)
T ss_dssp SCEEEEEEEETTEEEEEETT-EEEEEETT-TCCEEEEECSS---TTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEE
T ss_pred CcceEEEEeCCCeEEEEECC-CEEEEECC-CCcEEEEeeCC---CCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEE
Confidence 36888999999988776644 49999987 44433322111 01122468899999999 76665432 2455
Q ss_pred EEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEecc-CCC-Cce--eEee
Q 012721 293 RLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIR-MDS-TPV--ATFK 366 (457)
Q Consensus 293 ~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~-~~~-~~~--~~~~ 366 (457)
..+| .++.. ..... ......++|+|+|+.|+.++ . +.|.+||+. ..+ ... ..+.
T Consensus 164 ~~~~--~g~~~----~~~~~--------------~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~ 223 (326)
T 2ghs_A 164 YHVA--KGKVT----KLFAD--------------ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFI 223 (326)
T ss_dssp EEEE--TTEEE----EEEEE--------------ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEE
T ss_pred EEEe--CCcEE----EeeCC--------------CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEE
Confidence 5555 33321 11111 23467899999998776554 3 899999985 113 211 1121
Q ss_pred e---ccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec-cCCcce
Q 012721 367 I---HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ-AAPRAR 442 (457)
Q Consensus 367 ~---~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~ 442 (457)
. .... ...+++.++|.+.++...++.|.+|+. ++ +....+..+...+.+++|. |++...
T Consensus 224 ~~~~~~~~---------------p~gi~~d~~G~lwva~~~~~~v~~~d~-~g-~~~~~i~~~~~~~~~~af~g~d~~~L 286 (326)
T 2ghs_A 224 DSTGIKGG---------------MDGSVCDAEGHIWNARWGEGAVDRYDT-DG-NHIARYEVPGKQTTCPAFIGPDASRL 286 (326)
T ss_dssp ECTTSSSE---------------EEEEEECTTSCEEEEEETTTEEEEECT-TC-CEEEEEECSCSBEEEEEEESTTSCEE
T ss_pred ECCCCCCC---------------CCeeEECCCCCEEEEEeCCCEEEEECC-CC-CEEEEEECCCCCcEEEEEecCCCCEE
Confidence 1 1111 147899999998877777789999998 45 4556666666778999998 776543
No 218
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.13 E-value=8.5e-08 Score=87.87 Aligned_cols=171 Identities=12% Similarity=0.088 Sum_probs=95.9
Q ss_pred eEEEeCCCCCEEEEeC--------------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--ecCC
Q 012721 222 NSISNNSDCETFVSAD--------------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIY 279 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~~--------------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~ 279 (457)
+.+-|+|+++.++++. +..|.+||+. .++..+.+++. ........+.| +|++
T Consensus 191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~-~~k~~~tI~vg-----~~g~~P~~i~f~~~Pdg 264 (462)
T 2ece_A 191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLR-KRKRIHSLTLG-----EENRMALELRPLHDPTK 264 (462)
T ss_dssp CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETT-TTEEEEEEESC-----TTEEEEEEEEECSSTTC
T ss_pred ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECC-CCcEeeEEecC-----CCCCccceeEeeECCCC
Confidence 4577899999888873 7999999998 45666655432 11223455656 9999
Q ss_pred ccEEEEEc------cCCeEEEEEccCCeeeccccccccccccccCcc------cceeccccceEEEEEccCCCeEEEEec
Q 012721 280 CNLLAYSS------SRGFVRLVDMRQSALCDHSARILRDAAESHGSK------SFFTEIIASISDIKFANDGQHLLSRDY 347 (457)
Q Consensus 280 ~~~l~~~~------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~h~~~v~~~~~s~~g~~l~s~~~ 347 (457)
+++.+++ .+++|.+|....++... .+++.. ...+... ..+.+-......+.+||||++|.++..
T Consensus 265 -~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~--~~vIdi-~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr 340 (462)
T 2ece_A 265 -LMGFINMVVSLKDLSSSIWLWFYEDGKWNA--EKVIEI-PAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW 340 (462)
T ss_dssp -CEEEEEEEEETTTCCEEEEEEEEETTEEEE--EEEEEE-CCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET
T ss_pred -CEEEEEEeeeccCCCceEEEEEecCCceeE--EEEEeC-CCccccccccccccccccCCCceeEEEECCCCCEEEEEeC
Confidence 6555554 67788887766543211 111111 0000000 000111235788999999999998763
Q ss_pred --CcEEEEeccCCC--CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe
Q 012721 348 --MNLKLWDIRMDS--TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 348 --~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
+.|.+||+.... +.+..+..... +..............-..+.++|||++|+++.
T Consensus 341 g~d~VavfdV~d~~~~~lv~~I~tGG~-~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 341 GIGEVRQYDISNPFKPVLTGKVKLGGI-FHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTEEEEEECSSTTSCEEEEEEECBTT-TTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred CCCEEEEEEecCCCCcEEEEEEEeCCe-eccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 999999985322 33333332210 00000000000000004799999999999888
No 219
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.13 E-value=3.7e-09 Score=105.94 Aligned_cols=228 Identities=12% Similarity=0.052 Sum_probs=138.0
Q ss_pred CcEEEEEEEecCCCCEEEEe-----eCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 114 EKINRVRWCAAPNGSMFILS-----TNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~-----s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
..+..++| ||||++|+.+ +.+..|++||+.+++......
T Consensus 129 ~~l~~~~~--SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~---------------------------------- 172 (693)
T 3iuj_A 129 TALDQLSF--SRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL---------------------------------- 172 (693)
T ss_dssp CEEEEEEE--CTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE----------------------------------
T ss_pred EEEEEEEE--CCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc----------------------------------
Confidence 56888888 8999988853 334679999999987543210
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCC-------------eEEEEEcCCCcce-e
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDL-------------RINLWNLEISDQC-F 253 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~-------------~i~iwd~~~~~~~-~ 253 (457)
.+ .....++|+ |++.|+.+ .+. .|++|++.+.... .
T Consensus 173 --------------------------~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~ 223 (693)
T 3iuj_A 173 --------------------------KD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDR 223 (693)
T ss_dssp --------------------------EE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCE
T ss_pred --------------------------CC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccce
Confidence 00 012456799 99888877 553 4999998743321 2
Q ss_pred eeeecCCCcccC-CCCceEEEEEecCCccEEEEEc----cCCeEEEEEccCCeeeccccccccccccccCcccceecccc
Q 012721 254 NIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSS----SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIA 328 (457)
Q Consensus 254 ~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~----~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 328 (457)
.++. ... |......+.|+|+| ++|+... .+..|.++|+.++... ...+. .+..
T Consensus 224 ~v~~-----~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~~~~~---~~~l~-------------~~~~ 281 (693)
T 3iuj_A 224 LVFG-----AIPAQHHRYVGATVTEDD-RFLLISAANSTSGNRLYVKDLSQENAP---LLTVQ-------------GDLD 281 (693)
T ss_dssp EEES-----CSGGGCCSEEEEEECTTS-CEEEEEEESSSSCCEEEEEETTSTTCC---CEEEE-------------CSSS
T ss_pred EEEe-----cCCCCCeEEEEEEEcCCC-CEEEEEEccCCCCcEEEEEECCCCCCc---eEEEe-------------CCCC
Confidence 2211 222 44557889999999 7665443 2358999998765311 01111 1223
Q ss_pred ceEEEEEccCCCeEE-EEe-c---CcEEEEeccCCCCc--eeEeeeccccccccccccCCCCccccceEEEcCCCcEEEE
Q 012721 329 SISDIKFANDGQHLL-SRD-Y---MNLKLWDIRMDSTP--VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFAT 401 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~-s~~-~---~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s 401 (457)
..... ++++|..|+ ... + +.|..+|+.. +.. ...+..+...+ . .|++++++|+.
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~-~~~~~~~~l~~~~~~~---------------~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAAN-PGPAHWRDLIPERQQV---------------L--TVHSGSGYLFA 342 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTS-CCGGGCEEEECCCSSC---------------E--EEEEETTEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCC-CCccccEEEecCCCCE---------------E--EEEEECCEEEE
Confidence 33343 666666555 332 2 6788888875 332 34455554432 2 89999988876
Q ss_pred EeC-CC--cEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccccc
Q 012721 402 GSY-SN--LLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSLSN 448 (457)
Q Consensus 402 ~~~-dg--~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~~~ 448 (457)
... ++ .|++|++..+ ..........+.+..+.++|++...+...++
T Consensus 343 ~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss 391 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFEN 391 (693)
T ss_dssp EEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEEC
T ss_pred EEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecC
Confidence 655 43 6899998855 3222222344556777778888777665443
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.09 E-value=2.1e-08 Score=91.33 Aligned_cols=86 Identities=12% Similarity=0.041 Sum_probs=61.1
Q ss_pred EEEccCCCeEEEE-e---------cCcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEE
Q 012721 333 IKFANDGQHLLSR-D---------YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFAT 401 (457)
Q Consensus 333 ~~~s~~g~~l~s~-~---------~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s 401 (457)
++++|+++.++.+ . .+.+.++|+.+ .+.+..+...... ..++|+|||+ .+++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t-~~vv~~i~vg~~p----------------~gi~~s~Dg~~l~va 331 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV-GQTSGPISNGHDS----------------DAIIAAQDGASDNYA 331 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS-CCEEECCEEEEEE----------------CEEEECCSSSCEEEE
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC-CeEEEEEECCCCc----------------ceEEECCCCCEEEEE
Confidence 6899999887754 2 22566999986 7777777655543 5899999998 4555
Q ss_pred Ee-CCCcEEEEecCCCCceeeEEecCCCcceeeeecc
Q 012721 402 GS-YSNLLRIFSHGVGSAGGITVEAGKNENRKPILQA 437 (457)
Q Consensus 402 ~~-~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p 437 (457)
.. .++.|.++|+.++ +....+.....| ..+++++
T Consensus 332 ~~~~~~~VsVID~~t~-kvv~~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 332 NSAGTEVLDIYDAASD-QDQSSVELDKGP-ESLSVQN 366 (368)
T ss_dssp EETTTTEEEEEESSSC-EEEEECCCCSCC-CEEECCC
T ss_pred ccCCCCeEEEEECCCC-cEEEEEECCCCC-CEEEeec
Confidence 55 5899999999999 666666654443 3444443
No 221
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.09 E-value=1.2e-07 Score=87.09 Aligned_cols=252 Identities=10% Similarity=0.004 Sum_probs=138.0
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC-Ccccc
Q 012721 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (457)
Q Consensus 37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (457)
.++|+|||++|+++. .++.|.+||..+.+.. .++.-. ...+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~---------------------------~~i~~~~~~~~- 121 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 121 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence 899999999998885 3678999999876532 111100 0000
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEE-EeecCCCceeeeeeccccccccccCCCCCc
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKI-KEMDHFPFVSSENTLLAEKNFMNEHNPPSF 182 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
........+.| +|+|++|+++.. ++.|.++| .+++.... +.... ++.+.+.....+.
T Consensus 122 -----~~g~~p~~~~~--spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~~~~~~~~------- 181 (373)
T 2mad_H 122 -----DVGPYSWMNAN--TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHPGAPSTFY------- 181 (373)
T ss_pred -----ccCCCccceEE--CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEeCCCceEE-------
Confidence 00012346788 799999998874 57899999 88877654 33211 0111111111000
Q ss_pred eeccCCccccccceEEEeccCccccccce--eeccCCCCCe-eEEEeCCCCCEEEE-eCCCeEEEEEcCCCc-ceeeeee
Q 012721 183 AHGYHLEWTENMATKIANVGNSVHARCQK--VYPHAHDFNI-NSISNNSDCETFVS-ADDLRINLWNLEISD-QCFNIVD 257 (457)
Q Consensus 183 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~h~~~v-~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~-~~~~~~~ 257 (457)
....++.+.+++. ......... .. .....++ ....+.+++..++. ...+.+.+.|+.... .....+.
T Consensus 182 ------~~~~dg~~~~vd~-~g~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~ 253 (373)
T 2mad_H 182 ------LLCAQGGLAKTDH-AGGAAGAGLVGAM-LTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPID 253 (373)
T ss_pred ------EEcCCCCEEEEEC-CCcEEEEEecccc-ccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeee
Confidence 0112334555555 211110000 00 0111121 23445555554444 477899999986322 1122221
Q ss_pred cCCCc---ccCCCCceEEEEEecCCccEEEEEcc----------CCeEEEEEccCCeeeccccccccccccccCccccee
Q 012721 258 MKPSN---MDDLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFT 324 (457)
Q Consensus 258 ~~~~~---~~~~~~~i~~v~~~p~~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (457)
..... ..-.......+.++|++ ..+.++.. ++.|.++|+.+.+.. ..+..
T Consensus 254 ~~~~~~~~~~~~p~g~~~~~~s~d~-~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv----~~i~~------------ 316 (373)
T 2mad_H 254 ALSGGRKADTWRPGGWQQVAYLKSS-DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----SQISL------------ 316 (373)
T ss_pred ecCCcccccceecCceEeEEECCCC-CEEEEEeccCCcccccCCCCeEEEEECCCCEEE----EEEEC------------
Confidence 11000 00012234457889998 55555432 468999999987654 22222
Q ss_pred ccccceEEEEEccCCC-eEEEEe--cCcEEEEeccCCCCceeE
Q 012721 325 EIIASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVAT 364 (457)
Q Consensus 325 ~h~~~v~~~~~s~~g~-~l~s~~--~~~i~~wd~~~~~~~~~~ 364 (457)
......++|+|||+ +++++. ++.|.++|+.+ .+.+..
T Consensus 317 --g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t-~~vv~~ 356 (373)
T 2mad_H 317 --GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA-GDQDQS 356 (373)
T ss_pred --CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC-CCEEee
Confidence 23578999999999 677665 49999999986 677766
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.09 E-value=6.9e-08 Score=86.41 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=111.9
Q ss_pred CCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEecCCccEEEE----Ecc---
Q 012721 218 DFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAY----SSS--- 288 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~----~~~--- 288 (457)
...+..++++++|+++++. .++.|.+|+.+ +........ ..+ ....+..++++|+| .++++ |..
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~--g~~~~~~~~----~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~ 157 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDAD--GQAHLLVGR----YAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPS 157 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTT--SCEEEEECE----ETTEECSCCCCEEECTTS-CEEEECCSGGGSCGG
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCC--CCEEEEEec----cCCCccCCCCCEEECCCC-CEEEeCcCCCccccc
Confidence 3457889999999977777 67899999976 332222110 111 12346789999999 87776 332
Q ss_pred ----------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c------CcEE
Q 012721 289 ----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y------MNLK 351 (457)
Q Consensus 289 ----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~------~~i~ 351 (457)
.+.|..||..+++.. ... . ......++|+|+++.|+.++ . +.|.
T Consensus 158 ~~~~~~~~~~~~~v~~~d~~~g~~~----~~~-~--------------~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~ 218 (305)
T 3dr2_A 158 QGCPADPELAHHSVYRLPPDGSPLQ----RMA-D--------------LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEIT 218 (305)
T ss_dssp GSCCCCCSSSCEEEEEECSSSCCCE----EEE-E--------------ESSEEEEEECTTSSEEEEEECCC---CCCEEE
T ss_pred cccccccccCCCeEEEEcCCCCcEE----EEe-c--------------CCCCcceEEcCCCCEEEEEecCCcCCCCCEEE
Confidence 256777777655432 111 1 13467899999999777653 2 5799
Q ss_pred EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce
Q 012721 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR 431 (457)
Q Consensus 352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~ 431 (457)
+|++.. .. +........... . ....+++.++|++.++ +.+| |.+|+.. + +....+.... .+.
T Consensus 219 ~~~~~~-~~-l~~~~~~~~~~~---------~--~pdgi~~d~~G~lwv~-~~~g-v~~~~~~-g-~~~~~~~~~~-~~~ 280 (305)
T 3dr2_A 219 AFAWRD-GA-LHDRRHFASVPD---------G--LPDGFCVDRGGWLWSS-SGTG-VCVFDSD-G-QLLGHIPTPG-TAS 280 (305)
T ss_dssp EEEEET-TE-EEEEEEEECCSS---------S--CCCSEEECTTSCEEEC-CSSE-EEEECTT-S-CEEEEEECSS-CCC
T ss_pred EEEecC-CC-ccCCeEEEECCC---------C--CCCeEEECCCCCEEEe-cCCc-EEEECCC-C-CEEEEEECCC-cee
Confidence 999864 22 221111100000 0 0036899999995544 4444 9999984 4 4555555544 588
Q ss_pred eeeeccCCcceec
Q 012721 432 KPILQAAPRARRS 444 (457)
Q Consensus 432 ~~~~~p~~~~~~~ 444 (457)
.++|.|++.....
T Consensus 281 ~~~f~~d~~~L~i 293 (305)
T 3dr2_A 281 NCTFDQAQQRLFI 293 (305)
T ss_dssp EEEECTTSCEEEE
T ss_pred EEEEeCCCCEEEE
Confidence 8999988764443
No 223
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=99.05 E-value=9.5e-07 Score=77.23 Aligned_cols=176 Identities=12% Similarity=0.005 Sum_probs=105.4
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc--CCeEEEE
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS--RGFVRLV 295 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~--dg~i~lw 295 (457)
....+++++++..|+.+ ..+.|.+++++ ......+. .........++++|++..++++... .+.|..+
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~ 151 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMD-GTQRRVLF-------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETS 151 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEE
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcC-CCCEEEEE-------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEE
Confidence 56789999876555554 78899999987 32222221 1112456899999965244444433 4688888
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecccccc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~ 373 (457)
++..... ..+.. ........++++|++..|..++ . +.|.++|... ......+.....+
T Consensus 152 ~~dg~~~-----~~~~~------------~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g-~~~~~~~~~~~~P-- 211 (267)
T 1npe_A 152 HMDGTNR-----RILAQ------------DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ-PGRRKVLEGLQYP-- 211 (267)
T ss_dssp ETTSCCC-----EEEEC------------TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE-EEEEEEEECCCSE--
T ss_pred ecCCCCc-----EEEEE------------CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC-CceEEEecCCCCc--
Confidence 8764321 11110 0013467899999887777654 3 8999999863 2222222211111
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCCCceeeEEecCC-CcceeeeeccCCc
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPR 440 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~ 440 (457)
..++.. +..|+.+. ..+.|.++|..++ +....+.... .....+++.|++-
T Consensus 212 --------------~gi~~d--~~~lyva~~~~~~v~~~d~~~g-~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 212 --------------FAVTSY--GKNLYYTDWKTNSVIAMDLAIS-KEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp --------------EEEEEE--TTEEEEEETTTTEEEEEETTTT-EEEEEECCSSCCCCCCEEEECSCC
T ss_pred --------------eEEEEe--CCEEEEEECCCCeEEEEeCCCC-CceEEEccccccccceeeecCccC
Confidence 355553 44555444 5689999999988 5555554333 3477888888864
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.00 E-value=1.4e-07 Score=93.92 Aligned_cols=202 Identities=10% Similarity=0.048 Sum_probs=116.2
Q ss_pred eEEEeCCCCCEEEEe-CCC-------------------eEEEEEcCCCcceeeeeecCCCccc--CCCCceEEEEEecCC
Q 012721 222 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPIY 279 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~~ 279 (457)
..++++|++..++.+ .++ .|..+|.+ .++..-.+...+...- ........+....+|
T Consensus 246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~-TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG 324 (677)
T 1kb0_A 246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPD-TGKYKWHYQETPGDNWDYTSTQPMILADIKIAG 324 (677)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCCEEEEEEETT
T ss_pred cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECC-CCCEEEEEecCCCcccccccCCCcEEEecccCC
Confidence 467788888888877 553 59999998 4444433322211000 001222333444455
Q ss_pred c--cEEEEEccCCeEEEEEccCCeeecccccc---cccccc---ccC--------cc--cce---eccccceEEEEEccC
Q 012721 280 C--NLLAYSSSRGFVRLVDMRQSALCDHSARI---LRDAAE---SHG--------SK--SFF---TEIIASISDIKFAND 338 (457)
Q Consensus 280 ~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~~~~---~~~--------~~--~~~---~~h~~~v~~~~~s~~ 338 (457)
. ..++.++.+|.|+++|.++++..-..... +...-+ .+. .. ..+ .+.. .-..++++|+
T Consensus 325 ~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~-~w~~~a~dp~ 403 (677)
T 1kb0_A 325 KPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAH-NWHPMSFNPQ 403 (677)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSS-CSSCCEEETT
T ss_pred cEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCccccc-CCCCceEcCC
Confidence 2 47888999999999999999764211000 000000 000 00 000 0000 0125788898
Q ss_pred CCeEEEEe--------------------------------------------cCcEEEEeccCCCCceeEeeeccccccc
Q 012721 339 GQHLLSRD--------------------------------------------YMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 339 g~~l~s~~--------------------------------------------~~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+.++++.. .+.|..||+.+ ++.+-.+......
T Consensus 404 ~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~~~~--- 479 (677)
T 1kb0_A 404 TGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA-QKAAWSVEHVSPW--- 479 (677)
T ss_dssp TTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT-TEEEEEEEESSSC---
T ss_pred CCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCC-CcEEeecCCCCCC---
Confidence 87776532 16788999986 6766665533221
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe-cCCCcceeeeeccCCccee
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-AGKNENRKPILQAAPRARR 443 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~~ 443 (457)
....+..++..++.++.||.+++||..++ +.+..+. ++......+.+.+++....
T Consensus 480 -------------~~g~~~~~g~~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 480 -------------NGGTLTTAGNVVFQGTADGRLVAYHAATG-EKLWEAPTGTGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp -------------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -------------cCcceEeCCCEEEEECCCCcEEEEECCCC-ceeeeeeCCCCcccCCEEEEeCCEEEE
Confidence 24556677888899999999999999999 5555554 4434445566667775444
No 225
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.00 E-value=4.3e-10 Score=103.61 Aligned_cols=203 Identities=8% Similarity=0.012 Sum_probs=105.1
Q ss_pred CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcc
Q 012721 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (457)
Q Consensus 126 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 205 (457)
++..+++++.|+.|..||..+|+.......
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-------------------------------------------------- 37 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-------------------------------------------------- 37 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------------------------------------------
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------------------------------------------
Confidence 567899999999999999999976544321
Q ss_pred ccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEE
Q 012721 206 HARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLA 284 (457)
Q Consensus 206 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~ 284 (457)
..+.+..+..++..++++ .|+.|+.||.+ .++....+........ ...+ .+. .+ ..++
T Consensus 38 -------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~-tG~~~w~~~~~~~~~~-~~sp----~~~-~~-~~v~ 96 (369)
T 2hz6_A 38 -------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSK-NNEGLTKLPFTIPELV-QASP----CRS-SD-GILY 96 (369)
T ss_dssp -------------CCSCCCC-----CCEEECTTTCCEEEC------CCSEECSCCHHHHH-TTCS----CC-------CC
T ss_pred -------------CCceecceEcCCCEEEEeCCCCEEEEEECC-CCceeeeeeccCcccc-ccCc----eEe-cC-CEEE
Confidence 122223334567778877 99999999997 3443322211000000 0111 111 23 5677
Q ss_pred EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCcee
Q 012721 285 YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVA 363 (457)
Q Consensus 285 ~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~ 363 (457)
+++.|+.|..||.++++.. ..+.. + . ...++|++..+++++ ++.|+.||.++ ++.+.
T Consensus 97 ~g~~dg~v~a~D~~tG~~~----w~~~~-------------~-~---~~~~~p~~~~v~~~~~dg~v~a~d~~t-G~~~W 154 (369)
T 2hz6_A 97 MGKKQDIWYVIDLLTGEKQ----QTLSS-------------A-F---ADSLSPSTSLLYLGRTEYTITMYDTKT-RELRW 154 (369)
T ss_dssp CCEEEEEEEEECCC-------------------------------------------EEEEEEEEEEECCCSSS-SSCCC
T ss_pred EEeCCCEEEEEECCCCcEE----EEecC-------------C-C---cccccccCCEEEEEecCCEEEEEECCC-CCEEE
Confidence 8888999999999998643 11111 0 0 134456777787765 49999999986 66655
Q ss_pred EeeeccccccccccccCCCCccccceEEEcCCC---cEEEEEeCCCcEEEEecCCCCceeeEEecCCCcce-eeeeccCC
Q 012721 364 TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDG---LHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENR-KPILQAAP 439 (457)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~---~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~-~~~~~p~~ 439 (457)
.+..+... ...+.++. ..+++++.||.|+.||..+| +..-... ..+++. ...+++++
T Consensus 155 ~~~~~~~~-----------------~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG-~~~W~~~-~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 155 NATYFDYA-----------------ASLPEDDVDYKMSHFVSNGDGLVVTVDSESG-DVLWIQN-YASPVVAFYVWQREG 215 (369)
T ss_dssp EEEEEEEC-----------------CBCCCCCTTCCCCEEEEETSCEEEEECTTTC-CEEEEEE-CSSCEEEEEECTTSS
T ss_pred eEeccccc-----------------CccccCCccccceEEEECCCCEEEEEECCCC-cEEEEec-CCCceEEEEEecCCc
Confidence 55432211 23333332 45777889999999999999 4444444 334443 33445555
Q ss_pred c
Q 012721 440 R 440 (457)
Q Consensus 440 ~ 440 (457)
.
T Consensus 216 ~ 216 (369)
T 2hz6_A 216 L 216 (369)
T ss_dssp C
T ss_pred e
Confidence 3
No 226
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.98 E-value=9.1e-08 Score=88.61 Aligned_cols=255 Identities=10% Similarity=0.115 Sum_probs=140.8
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC-Ccccc
Q 012721 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (457)
Q Consensus 37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (457)
.++++|||++|+++. .++.|.++|..+.+.. ..+.-- ...|
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv---------------------------~~I~v~g~~r~- 173 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRF- 173 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEE---------------------------EEEEETTCCCC-
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEE---------------------------EEEECCCcccc-
Confidence 899999999888875 3678999999887642 221100 0000
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCce
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFA 183 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (457)
........+.| +++|++++++.. ++.|.+.|+.+++....+..... ....+.....+ ..
T Consensus 174 -----~~g~~P~~~~~--spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-----~~~~p~g~~~~-------v~ 234 (426)
T 3c75_H 174 -----LVGTYQWMNAL--TPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-----YHIFPASPTVF-------YM 234 (426)
T ss_dssp -----CBSCCGGGSEE--CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTEE-------EE
T ss_pred -----ccCCCcceEEE--cCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-----eeeccCCCcEE-------EE
Confidence 00011234677 799999998874 58899999999988766554211 00000000000 00
Q ss_pred eccCCccccccceEEEeccCccccccc-eeeccCCCCCe-eEEEeCCCCCEEEEe-CCCeEEEEEcCCCcce-eeeeecC
Q 012721 184 HGYHLEWTENMATKIANVGNSVHARCQ-KVYPHAHDFNI-NSISNNSDCETFVSA-DDLRINLWNLEISDQC-FNIVDMK 259 (457)
Q Consensus 184 ~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~h~~~v-~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~ 259 (457)
+ ..++.+.+.+.......... ..+ .....++ ..+.+.+++..++.. ..+.|.+.|+...... ...+.+.
T Consensus 235 ~------~~dG~~~~V~~~~~~v~~~~~~~~-~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~ 307 (426)
T 3c75_H 235 N------CRDGSLARVDFADGETKVTNTEVF-HTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEAL 307 (426)
T ss_dssp E------ETTSSEEEEECCTTCCEEEECCCC-SCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESS
T ss_pred E------cCCCCEEEEECCCCcEEEEeeeee-ccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeec
Confidence 1 11222222222110000000 011 1111121 235678888877766 7889999998632211 1111110
Q ss_pred C-Cccc--CCCCceEEEEEecCCccEEEEEcc----------CCeEEEEEccCCeeeccccccccccccccCcccceecc
Q 012721 260 P-SNMD--DLTEVITSAEFHPIYCNLLAYSSS----------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEI 326 (457)
Q Consensus 260 ~-~~~~--~~~~~i~~v~~~p~~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 326 (457)
. .... ........++++|++ ..+++... ++.|.++|+.+.+.. ..+..
T Consensus 308 ~~~~i~~g~~p~g~~~va~s~dg-~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv----~~I~v-------------- 368 (426)
T 3c75_H 308 TEAERADDWRPGGWQQTAYHRQS-DRIYLLVDQRDEWKHKAASRFVVVLNAETGERI----NKIEL-------------- 368 (426)
T ss_dssp CTTTGGGTEEECSSSCEEEEGGG-TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE----EEEEE--------------
T ss_pred cccccccccccCCceeeEEcCCC-CEEEEEecccccccccCCCCEEEEEECCCCeEE----EEEEC--------------
Confidence 0 0000 001112236899998 55444431 357999999998655 33332
Q ss_pred ccceEEEEEccCCC-eEEEEe--cCcEEEEeccCCCCceeEe
Q 012721 327 IASISDIKFANDGQ-HLLSRD--YMNLKLWDIRMDSTPVATF 365 (457)
Q Consensus 327 ~~~v~~~~~s~~g~-~l~s~~--~~~i~~wd~~~~~~~~~~~ 365 (457)
......+.|+|||+ ++++.. ++.|.++|+.+ .+.+.++
T Consensus 369 g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t-~kvv~tI 409 (426)
T 3c75_H 369 GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAAT-GEELRSV 409 (426)
T ss_dssp EEEECEEEECCSSSCEEEEEETTTTEEEEEETTT-CCEEEEE
T ss_pred CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCC-CCEEEEe
Confidence 13478999999999 788775 49999999986 7888776
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.95 E-value=3.7e-07 Score=90.98 Aligned_cols=202 Identities=12% Similarity=0.062 Sum_probs=117.0
Q ss_pred eEEEeCCCCCEEEEe-CCC-------------------eEEEEEcCCCcceeeeeecCCCcccC--CCCceEEEEEecCC
Q 012721 222 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY 279 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~ 279 (457)
..++++|+..+++.+ .++ .|..+|.++ ++..-.+...+..... ............+|
T Consensus 238 ~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~T-G~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 238 DSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADT-GEYVWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTT-CCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccC-CceeEeeecCCcccccccCCCCcEEEeeccCC
Confidence 367888888888888 665 499999994 4444333221110000 11222222333355
Q ss_pred cc---EEEEEccCCeEEEEEccCCeeeccccc---ccccccc----c-----------cCccc--ceeccc--cceEEEE
Q 012721 280 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAAE----S-----------HGSKS--FFTEII--ASISDIK 334 (457)
Q Consensus 280 ~~---~l~~~~~dg~i~lwd~~~~~~~~~~~~---~~~~~~~----~-----------~~~~~--~~~~h~--~~v~~~~ 334 (457)
. .++.++.+|.++++|.++++....... .+..+.+ . +.... .+.+.. ..-..++
T Consensus 317 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a 395 (689)
T 1yiq_A 317 -KPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMS 395 (689)
T ss_dssp -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCE
T ss_pred -cEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcce
Confidence 4 788999999999999999976521000 0000000 0 00000 000000 0122378
Q ss_pred EccCCCeEEEEe----------------------------------------------cCcEEEEeccCCCCceeEeeec
Q 012721 335 FANDGQHLLSRD----------------------------------------------YMNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 335 ~s~~g~~l~s~~----------------------------------------------~~~i~~wd~~~~~~~~~~~~~~ 368 (457)
|+|+..++++.. +|.|+.||+.+ ++.+-.+..+
T Consensus 396 ~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t-G~~~W~~~~~ 474 (689)
T 1yiq_A 396 YNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK-QQAAWEVPYV 474 (689)
T ss_dssp EETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT-TEEEEEEEES
T ss_pred ECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC-CCeEeEccCC
Confidence 888877776531 26688899986 7776666554
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccCCccee
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARR 443 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~ 443 (457)
... ..-.+...+.+++.|+.||.|+.||.++| +.+..++.. ......+.+..+|....
T Consensus 475 ~~~----------------~~g~~~tagglvf~gt~dg~l~a~D~~tG-~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 475 TIF----------------NGGTLSTAGNLVFEGSADGRVIAYAADTG-EKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp SSC----------------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CCc----------------cCccceECCCEEEEECCCCcEEEEECCCC-ccceeeeCCCCcccCceEEEECCEEEE
Confidence 432 23456667889999999999999999999 555555533 33345677777776553
No 228
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.83 E-value=2.3e-07 Score=84.45 Aligned_cols=241 Identities=9% Similarity=-0.035 Sum_probs=134.3
Q ss_pred ccCCceEEEEECCCCCEEEEEeC-----CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccc
Q 012721 30 QDVDIVSAIEFDKTGDYLAVGDR-----GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEF 104 (457)
Q Consensus 30 ~h~~~V~~~~~s~~~~~latg~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 104 (457)
.|...+..++++++|+++++-.. ++.|.+||+.+++.. ..+.....
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~---------------------------~~~~~~~~-- 114 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLS---------------------------RVIYLPPP-- 114 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEE---------------------------EEEECCTT--
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEE---------------------------EEEECChh--
Confidence 35678999999999987776543 578999998877631 12211110
Q ss_pred cccccccccCcEEEEEEEecCC-CCEEEEee---CCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCC
Q 012721 105 DYLKSLEIEEKINRVRWCAAPN-GSMFILST---NDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPP 180 (457)
Q Consensus 105 ~~~~~~~~~~~V~~v~~~~s~~-~~~l~s~s---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (457)
.......+..+++ +++ +..+++-. .++.|.+||..+++......
T Consensus 115 ----~~~~~~~~~~v~v--d~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-------------------------- 162 (343)
T 2qe8_A 115 ----ITLSNSFVNDLAV--DLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQ-------------------------- 162 (343)
T ss_dssp ----TSCTTCCCCEEEE--ETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECT--------------------------
T ss_pred ----hcccccccceEEE--ecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEec--------------------------
Confidence 0000134688898 454 44445544 67899999998876544321
Q ss_pred CceeccCCccccccceEEEeccCccccccceeeccCCCCCee-EEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec
Q 012721 181 SFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNIN-SISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM 258 (457)
Q Consensus 181 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~ 258 (457)
+|..... ...+.+++..+.+. .++.++.|.
T Consensus 163 -----------------------------------~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~------------- 194 (343)
T 2qe8_A 163 -----------------------------------GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH------------- 194 (343)
T ss_dssp -----------------------------------TCTTTSCCSCCCEETTEECBEECTTSCEECCC-------------
T ss_pred -----------------------------------CCCcccccccceeECCEEEEeccCCCceecee-------------
Confidence 1100000 02233356555555 566554432
Q ss_pred CCCcccCCCCceEEEEEecCCccEEEEEccCC-eEEEEEccCCeee-ccccccccccccccCcccceeccccceEEEEEc
Q 012721 259 KPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG-FVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKFA 336 (457)
Q Consensus 259 ~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg-~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 336 (457)
..+..|+|+|++ +.|+++..++ .+..++....... ......+.. ....++......++++
T Consensus 195 ---------~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~g~pdgia~d 256 (343)
T 2qe8_A 195 ---------LGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK--------IERYSEKPICDGISID 256 (343)
T ss_dssp ---------CCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT--------CEEEEECCSCSCEEEC
T ss_pred ---------cccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc--------eEecccCCCCceEEEC
Confidence 125679999999 8777776655 4444443210000 000000000 0011223456679999
Q ss_pred cCCCeEEEEec-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 337 NDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 337 ~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
++|.++++... +.|.+||... ++.. .+....... ...+++|.+++.++++.+..+.+.+|.
T Consensus 257 ~~G~l~va~~~~~~V~~~d~~~-G~~~-~~~~~~~~~-------------~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 257 KDHNIYVGDLAHSAIGVITSAD-RAYK-LLVTDEKLS-------------WTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp TTCCEEEEEGGGTEEEEEETTT-TEEE-EEEECGGGS-------------CEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred CCCCEEEEccCCCeEEEEECCC-CCEE-EEEECCcee-------------cCCeeEECCCCcEEEEeCccccccccc
Confidence 99988887765 9999999832 4432 222211110 015899999998888877655554443
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.75 E-value=5.9e-09 Score=95.96 Aligned_cols=188 Identities=10% Similarity=-0.001 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccccCcEEEEEEE
Q 012721 43 TGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEIEEKINRVRWC 122 (457)
Q Consensus 43 ~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~ 122 (457)
++..|++++.||.|+.||..+++.. ..+.. . .+.+..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~---------------------------W~~~~-~-------------~~~s~p~- 45 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIK---------------------------WTLKE-D-------------PVLQVPT- 45 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEE---------------------------EEEEC-C-------------CSCCCC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEE---------------------------EEecC-C-------------Cceecce-
Confidence 5788999999999999999988752 22222 1 1222223
Q ss_pred ecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEecc
Q 012721 123 AAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVG 202 (457)
Q Consensus 123 ~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 202 (457)
..++..+++++.|+.|+.||..+|+...........
T Consensus 46 -~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~------------------------------------------- 81 (369)
T 2hz6_A 46 -HVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPE------------------------------------------- 81 (369)
T ss_dssp -----CCEEECTTTCCEEEC-----CCSEECSCCHHH-------------------------------------------
T ss_pred -EcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcc-------------------------------------------
Confidence 245667888889999999999888654332110000
Q ss_pred CccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc
Q 012721 203 NSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN 281 (457)
Q Consensus 203 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 281 (457)
.....++ +. ++..++++ .|+.|+.||.+ .++....+ ..+. ...++|++ .
T Consensus 82 ------------~~~~sp~----~~-~~~~v~~g~~dg~v~a~D~~-tG~~~w~~-------~~~~----~~~~~p~~-~ 131 (369)
T 2hz6_A 82 ------------LVQASPC----RS-SDGILYMGKKQDIWYVIDLL-TGEKQQTL-------SSAF----ADSLSPST-S 131 (369)
T ss_dssp ------------HHTTCSC----C------CCCCEEEEEEEEECCC----------------------------------
T ss_pred ------------ccccCce----Ee-cCCEEEEEeCCCEEEEEECC-CCcEEEEe-------cCCC----cccccccC-C
Confidence 0000111 11 23456666 89999999998 44443221 2121 23455676 7
Q ss_pred EEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccC----CCeEEEEecCcEEEEeccC
Q 012721 282 LLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND----GQHLLSRDYMNLKLWDIRM 357 (457)
Q Consensus 282 ~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~----g~~l~s~~~~~i~~wd~~~ 357 (457)
.+++++.|+.|+.||.++++..- .+.. .......++++ +.+++...+|.|+.||.++
T Consensus 132 ~v~~~~~dg~v~a~d~~tG~~~W----~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~t 192 (369)
T 2hz6_A 132 LLYLGRTEYTITMYDTKTRELRW----NATY---------------FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSES 192 (369)
T ss_dssp -EEEEEEEEEEECCCSSSSSCCC----EEEE---------------EEECCBCCCCCTTCCCCEEEEETSCEEEEECTTT
T ss_pred EEEEEecCCEEEEEECCCCCEEE----eEec---------------ccccCccccCCccccceEEEECCCCEEEEEECCC
Confidence 88899999999999999886331 1111 01112223332 4444444459999999986
Q ss_pred CCCceeEee
Q 012721 358 DSTPVATFK 366 (457)
Q Consensus 358 ~~~~~~~~~ 366 (457)
++.+-.+.
T Consensus 193 -G~~~W~~~ 200 (369)
T 2hz6_A 193 -GDVLWIQN 200 (369)
T ss_dssp -CCEEEEEE
T ss_pred -CcEEEEec
Confidence 67666555
No 230
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.74 E-value=3.4e-06 Score=80.22 Aligned_cols=148 Identities=7% Similarity=0.040 Sum_probs=86.2
Q ss_pred CeEEEEEcCCC-cce-eeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeec-c----cccccc
Q 012721 239 LRINLWNLEIS-DQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCD-H----SARILR 311 (457)
Q Consensus 239 ~~i~iwd~~~~-~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~-~----~~~~~~ 311 (457)
+.|.+.|..+. +.. ...+.. .....++.++|||...++++..+.+|.++|+.+.+... . ...+..
T Consensus 254 ~~V~VID~~~~~~~~~~~~Ipv--------g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 254 NGVKVVDGRKEASSLFTRYIPI--------ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp TTEEEEECSGGGCCSSEEEEEE--------ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred CcEEEEeCcccCCceeEEEEec--------CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence 45888888841 222 333221 13456889999993345555588999999999653100 0 000000
Q ss_pred ccccccCcccceeccccceEEEEEccCCCeEEEEe--cCcEEEEeccCC---------CCceeEeeeccccccccccccC
Q 012721 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--YMNLKLWDIRMD---------STPVATFKIHEHLRPKLCDLYN 380 (457)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~~~i~~wd~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 380 (457)
. ..-...-..++|+|+| ++.+.. ++.|.+||+... .+.+..+..|-....
T Consensus 326 ~-----------v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh------- 386 (595)
T 1fwx_A 326 E-----------PELGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGH------- 386 (595)
T ss_dssp C-----------CBCCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEE-------
T ss_pred E-----------cCCCCCcceEEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccccc-------
Confidence 0 0112457889999999 666654 499999999641 344555555432100
Q ss_pred CCCccccceEEEcCCCcEEEEEeC---CCc----------EEEEecCCC
Q 012721 381 NDSIFDKFECSVSGDGLHFATGSY---SNL----------LRIFSHGVG 416 (457)
Q Consensus 381 ~~~~~~v~~~~~s~d~~~l~s~~~---dg~----------i~iw~~~~~ 416 (457)
...-....++|||++|++... |+. -.++|+..+
T Consensus 387 ---~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 387 ---LKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp ---EEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred ---ceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 000023466899999998764 432 188999655
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.72 E-value=3.2e-06 Score=77.55 Aligned_cols=199 Identities=10% Similarity=-0.002 Sum_probs=115.9
Q ss_pred eeEEEeCCCCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc------
Q 012721 221 INSISNNSDCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS------ 287 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~------ 287 (457)
-..+...|+| +++++ .+ +.|.++|.+ ..+.+..+... .+.......+-|+|++ +.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~-T~~v~~~~~~~----~~~~~~~Yd~~~~p~~-~~mvsS~wg~p~~ 212 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHY-SFEPLGKWEID----RGDQYLAYDFWWNLPN-EVLVSSEWAVPNT 212 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTT-TCCEEEECCSB----CTTCCCCCCEEEETTT-TEEEECBCCCHHH
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECC-CCeEEEEEccC----CCCccccceEEECCCC-CEEEEccCcCccc
Confidence 3456778999 66665 44 789999998 56666654321 1112234468889999 8887774
Q ss_pred -------------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEE--ccCCCeEEEEe------
Q 012721 288 -------------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQHLLSRD------ 346 (457)
Q Consensus 288 -------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~g~~l~s~~------ 346 (457)
.+.+|.+||+.+++.. ..+.. . ........+.| +|+++++..++
T Consensus 213 ~~~g~~~~~~~~~~~d~V~v~D~~~~k~~----~tI~v-g----------~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~ 277 (462)
T 2ece_A 213 IEDGLKLEHLKDRYGNRIHFWDLRKRKRI----HSLTL-G----------EENRMALELRPLHDPTKLMGFINMVVSLKD 277 (462)
T ss_dssp HTTCCCTTTHHHHSCCEEEEEETTTTEEE----EEEES-C----------TTEEEEEEEEECSSTTCCEEEEEEEEETTT
T ss_pred cccccchhhhhhccCCEEEEEECCCCcEe----eEEec-C----------CCCCccceeEeeECCCCCEEEEEEeeeccC
Confidence 4789999999987543 22222 0 00122344545 99999887543
Q ss_pred c-CcEEEEeccCCCCce--eEeeeccccc-ccccccc----CCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCCC
Q 012721 347 Y-MNLKLWDIRMDSTPV--ATFKIHEHLR-PKLCDLY----NNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVGS 417 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~--~~~~~~~~~~-~~~~~~~----~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~~ 417 (457)
. ++|.+|..+. ++.. ..+......+ ..+..+. .... ....+.+|+||++|.++.. .+.|.+||+....
T Consensus 278 Lss~V~v~~~d~-g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~--~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~ 354 (462)
T 2ece_A 278 LSSSIWLWFYED-GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPP--LVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF 354 (462)
T ss_dssp CCEEEEEEEEET-TEEEEEEEEEECCEECCSSCCGGGGGGTEECC--CCCCEEECTTSCEEEEEETTTTEEEEEECSSTT
T ss_pred CCceEEEEEecC-CceeEEEEEeCCCccccccccccccccccCCC--ceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC
Confidence 3 7888777653 3211 1111111000 0000000 0000 1158999999999998876 6799999986432
Q ss_pred ceeeEEecCCC----------------cceeeeeccCCcceec
Q 012721 418 AGGITVEAGKN----------------ENRKPILQAAPRARRS 444 (457)
Q Consensus 418 ~~~~~~~~~~~----------------~v~~~~~~p~~~~~~~ 444 (457)
....+-....+ .-..+.++||+.-...
T Consensus 355 ~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyV 397 (462)
T 2ece_A 355 KPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYV 397 (462)
T ss_dssp SCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEE
T ss_pred CcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEE
Confidence 22222111111 3588899999987766
No 232
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.72 E-value=7e-07 Score=81.26 Aligned_cols=254 Identities=9% Similarity=0.005 Sum_probs=134.1
Q ss_pred EEEECCCCCEEEEEe----------CCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccC-Ccccc
Q 012721 37 AIEFDKTGDYLAVGD----------RGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSH-EPEFD 105 (457)
Q Consensus 37 ~~~~s~~~~~latg~----------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~~~ 105 (457)
.+.++||+++++++. .++.|.+||+.+.+.. .++... ...|-
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv---------------------------~~I~v~~~~~~~ 121 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI---------------------------ADIELPDAPRFS 121 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---------------------------EEEEETTSCSCC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---------------------------EEEECCCccccc
Confidence 799999999988886 3678999999988742 232211 00000
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeC--CCeEEE--EEecccceeEEEeecCCCceeeeeeccccccccccCCCCC
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTN--DKTIKL--WKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPS 181 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~--d~~i~v--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (457)
.......+.+ +|||++++++.. +..+.+ +|..+ ...+..... +...+.....+..
T Consensus 122 ------~g~~P~~ia~--SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~-----~~~~p~g~~~~~~----- 180 (368)
T 1mda_H 122 ------VGPRVHIIGN--CASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC-----FHIHPGAAATHYL----- 180 (368)
T ss_dssp ------BSCCTTSEEE--CTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC-----CCCEEEETTEEEC-----
T ss_pred ------cCCCcceEEE--cCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc-----eEEccCCCeEEEE-----
Confidence 0011345788 799999998864 467888 88877 222221110 0011110000000
Q ss_pred ceeccCCccccccceEEEeccCccc--cccce---eeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCc-ceee
Q 012721 182 FAHGYHLEWTENMATKIANVGNSVH--ARCQK---VYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISD-QCFN 254 (457)
Q Consensus 182 ~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~---~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~-~~~~ 254 (457)
...++.+.+.+.+.... .+... ....-...+. . .+++..++.. . +.|.+.|+.... ....
T Consensus 181 --------~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~ 247 (368)
T 1mda_H 181 --------GSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKA 247 (368)
T ss_dssp --------CCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEEC
T ss_pred --------EcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEE
Confidence 01122333344432000 00000 0001112233 3 4455555554 8 999999986322 1222
Q ss_pred eeecCCCcccCC---CCceEEEEEecCCccEEEEEcc---------CCeEEEEEccCCeeeccccccccccccccCcccc
Q 012721 255 IVDMKPSNMDDL---TEVITSAEFHPIYCNLLAYSSS---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSF 322 (457)
Q Consensus 255 ~~~~~~~~~~~~---~~~i~~v~~~p~~~~~l~~~~~---------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (457)
.+.+.......+ ......++++|++ ..++++.. ++.+.++|+.+.+.. ..+..
T Consensus 248 ~~~~~~~~~~~~~~~p~g~~~v~~s~dg-~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv----~~i~v---------- 312 (368)
T 1mda_H 248 AIDGNESGRKADNFRSAGFQMVAKLKNT-DGIMILTVEHSRSCLAAAENTSSVTASVGQTS----GPISN---------- 312 (368)
T ss_dssp CCCSSCTHHHHTTEEECSSSCEEEETTT-TEEEEEEEECSSCTTSCEEEEEEEESSSCCEE----ECCEE----------
T ss_pred EEEeccccccccccccCcceeeEEcCCC-CEEEEEeccccCcccccCCCEEEEECCCCeEE----EEEEC----------
Confidence 211110000000 1111226799998 65554432 235669999998654 33322
Q ss_pred eeccccceEEEEEccCCCe-EEEEe--cCcEEEEeccCCCCceeEeeecccc
Q 012721 323 FTEIIASISDIKFANDGQH-LLSRD--YMNLKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 323 ~~~h~~~v~~~~~s~~g~~-l~s~~--~~~i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
......++|+|||++ +++.. ++.|.++|+.+ .+.+..+.....+
T Consensus 313 ----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t-~kvv~~I~vg~~P 359 (368)
T 1mda_H 313 ----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS-DQDQSSVELDKGP 359 (368)
T ss_dssp ----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS-CEEEEECCCCSCC
T ss_pred ----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC-CcEEEEEECCCCC
Confidence 135789999999985 44544 49999999986 8888888766554
No 233
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.69 E-value=1.4e-05 Score=71.96 Aligned_cols=157 Identities=11% Similarity=0.030 Sum_probs=91.8
Q ss_pred CeeEEEeCC-CCCEEEEe-C-----------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCc
Q 012721 220 NINSISNNS-DCETFVSA-D-----------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 220 ~v~~~~~~~-~~~~l~~~-~-----------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~ 280 (457)
....+++.+ +|.++++. . ++.|..||.. .+...... ........++++|++
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~-~~~~~~~~--------~~~~~p~gia~~~dg- 196 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS-TKETTLLL--------KELHVPGGAEVSADS- 196 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT-TTEEEEEE--------EEESCCCEEEECTTS-
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC-CCEEEEec--------cCCccCcceEECCCC-
Confidence 456788888 88777764 2 3678888876 33322211 011234678999998
Q ss_pred cEEE-EEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-----------cC
Q 012721 281 NLLA-YSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-----------YM 348 (457)
Q Consensus 281 ~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-----------~~ 348 (457)
+.|. +-...+.|..|++...... ....+.. ..+ ...++++++|++.++.. .+
T Consensus 197 ~~lyv~d~~~~~I~~~~~~~~~~~--~~~~~~~-------------~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~ 260 (322)
T 2fp8_A 197 SFVLVAEFLSHQIVKYWLEGPKKG--TAEVLVK-------------IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDP 260 (322)
T ss_dssp SEEEEEEGGGTEEEEEESSSTTTT--CEEEEEE-------------CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEE
T ss_pred CEEEEEeCCCCeEEEEECCCCcCC--ccceEEe-------------CCC-CCCeEECCCCCEEEEecCcccccccCCCcc
Confidence 6554 4466789999998753210 0011110 012 56789999998776643 25
Q ss_pred cEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 349 NLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 349 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.|..+|.. ++.+..+....+.. ...+..+++ .++.+.++...++.|..+++...
T Consensus 261 ~v~~~d~~--G~~~~~~~~~~g~~-----------~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~ 314 (322)
T 2fp8_A 261 KGIKFDEF--GNILEVIPLPPPFA-----------GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDKK 314 (322)
T ss_dssp EEEEECTT--SCEEEEEECCTTTT-----------TSCCCEEEE-ETTEEEEECSSCSEEEEEEC---
T ss_pred EEEEECCC--CCEEEEEECCCCCc-----------cccceEEEE-eCCEEEEeecCCCceEEEecccc
Confidence 57777763 67676665443210 000145655 46666666667788999998644
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.69 E-value=7.3e-05 Score=65.08 Aligned_cols=135 Identities=13% Similarity=0.150 Sum_probs=81.2
Q ss_pred CeeEEEeCCCCCEEEEe--C--CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEE
Q 012721 220 NINSISNNSDCETFVSA--D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLV 295 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lw 295 (457)
....++++|++..|+.+ . .+.|..++++ .. ....+ ..........++++|++..++++-...+.|.++
T Consensus 123 ~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d-g~-~~~~~------~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~ 194 (267)
T 1npe_A 123 NPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD-GT-NRRIL------AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL 194 (267)
T ss_dssp SEEEEEEETTTTEEEEEECCSSSCEEEEEETT-SC-CCEEE------ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CccEEEEeeCCCEEEEEECCCCCcEEEEEecC-CC-CcEEE------EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence 45789999966555544 3 4789888887 22 22221 111224578999999873555666677899999
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecccccc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~ 373 (457)
|+...... ..... ......++.. +..|..++ . +.|..+|..+ ++.+..+.......+
T Consensus 195 ~~~g~~~~----~~~~~--------------~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~-g~~~~~i~~g~~~~p 253 (267)
T 1npe_A 195 NPAQPGRR----KVLEG--------------LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAI-SKEMDTFHPHKQTRL 253 (267)
T ss_dssp ETTEEEEE----EEEEC--------------CCSEEEEEEE--TTEEEEEETTTTEEEEEETTT-TEEEEEECCSSCCCC
T ss_pred ecCCCceE----EEecC--------------CCCceEEEEe--CCEEEEEECCCCeEEEEeCCC-CCceEEEcccccccc
Confidence 98764321 11111 1123455554 45555443 3 8999999875 677777654321100
Q ss_pred ccccccCCCCccccceEEEcCCCc
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGL 397 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~ 397 (457)
..+++.|++.
T Consensus 254 --------------~gi~~~~~~~ 263 (267)
T 1npe_A 254 --------------YGITIALSQC 263 (267)
T ss_dssp --------------CCEEEECSCC
T ss_pred --------------ceeeecCccC
Confidence 4788888865
No 235
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.68 E-value=4e-05 Score=68.29 Aligned_cols=238 Identities=11% Similarity=0.114 Sum_probs=130.1
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCccccccccccc
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLEI 112 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 112 (457)
.....++|+++|+++++-..++.|..|+.++... ..+. ..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~----------------------------~~~~-~~----------- 71 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ----------------------------IHAT-VE----------- 71 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE----------------------------EEEE-CS-----------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE----------------------------EEEe-CC-----------
Confidence 5678899999999777776788888888654321 1111 11
Q ss_pred cCcEEEEEEEecCCCCEEEEeeCC-C-eEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcc
Q 012721 113 EEKINRVRWCAAPNGSMFILSTND-K-TIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEW 190 (457)
Q Consensus 113 ~~~V~~v~~~~s~~~~~l~s~s~d-~-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (457)
.....+++ .++++++++.... + .|..++..+++........
T Consensus 72 -~~p~gia~--~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~---------------------------------- 114 (306)
T 2p4o_A 72 -GKVSGLAF--TSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLP---------------------------------- 114 (306)
T ss_dssp -SEEEEEEE--CTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECT----------------------------------
T ss_pred -CCceeEEE--cCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCC----------------------------------
Confidence 45788898 6888866654432 2 3555666666554332210
Q ss_pred ccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeec--CCCcccCCC
Q 012721 191 TENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDM--KPSNMDDLT 267 (457)
Q Consensus 191 ~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~ 267 (457)
.......++..+++..+++. .++.|+.+|.......+..... .........
T Consensus 115 --------------------------~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~ 168 (306)
T 2p4o_A 115 --------------------------DAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF 168 (306)
T ss_dssp --------------------------TCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS
T ss_pred --------------------------CccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC
Confidence 01112233444455455555 6888888887621111110000 000011111
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccC-CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ-SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.....+ +|++..++++-...+.|..||+.. ++.. ....+.. ......++++++|++.++..
T Consensus 169 ~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~~--------------~~~P~gi~vd~dG~l~va~~ 230 (306)
T 2p4o_A 169 PAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFVE--------------QTNIDDFAFDVEGNLYGATH 230 (306)
T ss_dssp CSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEEE--------------SCCCSSEEEBTTCCEEEECB
T ss_pred CcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEec--------------cCCCCCeEECCCCCEEEEeC
Confidence 234555 788734555566788999999875 3211 0111111 12356689999998766654
Q ss_pred c-CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEc---CCCcEEEEEeCCC
Q 012721 347 Y-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVS---GDGLHFATGSYSN 406 (457)
Q Consensus 347 ~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s---~d~~~l~s~~~dg 406 (457)
. +.|.++|.. ++............ ..++++|. ||+..|+..+..+
T Consensus 231 ~~~~V~~~~~~--G~~~~~~~~~~~~~-------------~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 231 IYNSVVRIAPD--RSTTIIAQAEQGVI-------------GSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TTCCEEEECTT--CCEEEEECGGGTCT-------------TEEEEEECCSTTTTTEEEEEECTT
T ss_pred CCCeEEEECCC--CCEEEEeecccccC-------------CceEEEEecccCCCCEEEEECCCC
Confidence 4 889999874 44432211111100 01589998 8877777665543
No 236
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.67 E-value=5.8e-05 Score=69.43 Aligned_cols=151 Identities=13% Similarity=0.088 Sum_probs=84.7
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC--Cc---e-EEEEEecCCccEEEEEccCCeEEEEEccCCee
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT--EV---I-TSAEFHPIYCNLLAYSSSRGFVRLVDMRQSAL 302 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~--~~---i-~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~ 302 (457)
+..++.+ .++.|..+|.. .++..-....... .+.. .. + ..... .+ ..++.++.++.+..+|.++++.
T Consensus 188 ~~~v~~g~~~g~l~~~d~~-tG~~~w~~~~~~~--~~~~~~~~~~~~~~~p~~--~~-~~v~~~~~~g~l~~~d~~tG~~ 261 (376)
T 3q7m_A 188 FGAAVVGGDNGRVSAVLME-QGQMIWQQRISQA--TGSTEIDRLSDVDTTPVV--VN-GVVFALAYNGNLTALDLRSGQI 261 (376)
T ss_dssp TTEEEECCTTTEEEEEETT-TCCEEEEEECCC-------------CCCCCCEE--ET-TEEEEECTTSCEEEEETTTCCE
T ss_pred CCEEEEEcCCCEEEEEECC-CCcEEEEEecccC--CCCcccccccccCCCcEE--EC-CEEEEEecCcEEEEEECCCCcE
Confidence 3466677 89999999998 4444322211100 0000 00 0 01111 13 4677778899999999998864
Q ss_pred eccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCC
Q 012721 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNN 381 (457)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (457)
. +.. . ......+... +..|+.++ ++.|..+|..+ ++.+...........
T Consensus 262 ~------w~~-~------------~~~~~~~~~~--~~~l~~~~~~g~l~~~d~~t-G~~~w~~~~~~~~~~-------- 311 (376)
T 3q7m_A 262 M------WKR-E------------LGSVNDFIVD--GNRIYLVDQNDRVMALTIDG-GVTLWTQSDLLHRLL-------- 311 (376)
T ss_dssp E------EEE-C------------CCCEEEEEEE--TTEEEEEETTCCEEEEETTT-CCEEEEECTTTTSCC--------
T ss_pred E------eec-c------------CCCCCCceEE--CCEEEEEcCCCeEEEEECCC-CcEEEeecccCCCcc--------
Confidence 3 221 0 0123334333 44555554 58999999976 666554431111100
Q ss_pred CCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 382 DSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 382 ~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
..... .+..|+.++.+|.|+.+|..++ +.......
T Consensus 312 ------~~~~~--~~~~l~v~~~~g~l~~~d~~tG-~~~~~~~~ 346 (376)
T 3q7m_A 312 ------TSPVL--YNGNLVVGDSEGYLHWINVEDG-RFVAQQKV 346 (376)
T ss_dssp ------CCCEE--ETTEEEEECTTSEEEEEETTTC-CEEEEEEC
T ss_pred ------cCCEE--ECCEEEEEeCCCeEEEEECCCC-cEEEEEec
Confidence 12233 3467888999999999999999 45554544
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.64 E-value=2.9e-06 Score=80.65 Aligned_cols=181 Identities=8% Similarity=-0.008 Sum_probs=103.4
Q ss_pred CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---------------CeEEEEEccCCe
Q 012721 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---------------GFVRLVDMRQSA 301 (457)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---------------g~i~lwd~~~~~ 301 (457)
.++.+.+.|.++ .+....+.+ .+ ....++++|+| +++++.+.+ ..|.+.|....+
T Consensus 173 ~~~~vtvID~~t-~~v~~qI~V-----gg---~pd~~~~spdG-k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~ 242 (595)
T 1fwx_A 173 YVNVFTAVDADK-WEVAWQVLV-----SG---NLDNCDADYEG-KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE 242 (595)
T ss_dssp EEEEEEEEETTT-TEEEEEEEE-----SS---CCCCEEECSSS-SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH
T ss_pred cCceEEEEECCC-CeEEEEEEe-----CC---CccceEECCCC-CEEEEEecCcccCcchhhccccccceEEEeecccee
Confidence 356899999984 444433221 12 23456789998 777666644 235666654321
Q ss_pred ee--------ccccccccccccccCc-ccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCC----------
Q 012721 302 LC--------DHSARILRDAAESHGS-KSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDST---------- 360 (457)
Q Consensus 302 ~~--------~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~---------- 360 (457)
.. ...+.+++........ ...+. -.....++.++|||+++++++. .+|.++|+.+ .+
T Consensus 243 ~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~-~~~~~~~~l~~~ 320 (595)
T 1fwx_A 243 KAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR-FDAVFYENADPR 320 (595)
T ss_dssp HHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGG-HHHHHHSCCCGG
T ss_pred EeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcc-cccccccccCcc
Confidence 10 0112222220000000 00111 1234568999999999998763 9999999974 21
Q ss_pred --ceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC---------CceeeEEecCCCc
Q 012721 361 --PVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG---------SAGGITVEAGKNE 429 (457)
Q Consensus 361 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~---------~~~~~~~~~~~~~ 429 (457)
.........++ ..++|+|||...++.--|+.|.+||+.++ .+.+.++..|-.|
T Consensus 321 ~~v~~~v~vG~gP----------------~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqp 384 (595)
T 1fwx_A 321 SAVVAEPELGLGP----------------LHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQP 384 (595)
T ss_dssp GGEEECCBCCSCE----------------EEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCE
T ss_pred cceEEEcCCCCCc----------------ceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeeccccc
Confidence 12222222222 58999999943344556999999999872 1456666666544
Q ss_pred -----ceeeeeccCCcceecc
Q 012721 430 -----NRKPILQAAPRARRSS 445 (457)
Q Consensus 430 -----v~~~~~~p~~~~~~~~ 445 (457)
.....++|||.-..++
T Consensus 385 Gh~~~~~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 385 GHLKTVMGETLDATNDWLVCL 405 (595)
T ss_dssp EEEEETTTTSTTCCSSEEEEE
T ss_pred ccceeccceEeCCCCCEEEEc
Confidence 2445678888877763
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.63 E-value=3.1e-05 Score=66.52 Aligned_cols=211 Identities=9% Similarity=0.023 Sum_probs=123.9
Q ss_pred EEEEEEEecCCCCEEEEeeC--CCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 116 INRVRWCAAPNGSMFILSTN--DKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 116 V~~v~~~~s~~~~~l~s~s~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
...+.| ++++.++++.+. ++.|.+.|..+++....+....
T Consensus 23 ~~Gl~~--~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~------------------------------------ 64 (266)
T 2iwa_A 23 TQGLVY--AENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD------------------------------------ 64 (266)
T ss_dssp EEEEEE--CSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT------------------------------------
T ss_pred cccEEE--eCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC------------------------------------
Confidence 678999 676655555443 6899999999998776544211
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
+ .....+++. .+...++. .++.+.++|.. ..+.+..+... .+ . .
T Consensus 65 -----------------------~-~fgeGi~~~-g~~lyv~t~~~~~v~viD~~-t~~v~~~i~~g----~~--~---g 109 (266)
T 2iwa_A 65 -----------------------S-YFGEGLTLL-NEKLYQVVWLKNIGFIYDRR-TLSNIKNFTHQ----MK--D---G 109 (266)
T ss_dssp -----------------------T-CCEEEEEEE-TTEEEEEETTCSEEEEEETT-TTEEEEEEECC----SS--S---C
T ss_pred -----------------------C-cceEEEEEe-CCEEEEEEecCCEEEEEECC-CCcEEEEEECC----CC--C---e
Confidence 0 111234454 23344445 89999999998 55566554322 01 1 1
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~ 351 (457)
..++++| ..++++..++.|.++|..+.+.. ..+.. ...+ ..-...+.+.|. +|+..+.... +.|.
T Consensus 110 ~glt~Dg-~~l~vs~gs~~l~viD~~t~~v~----~~I~V-g~~~-------~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 110 WGLATDG-KILYGSDGTSILYEIDPHTFKLI----KKHNV-KYNG-------HRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp CEEEECS-SSEEEECSSSEEEEECTTTCCEE----EEEEC-EETT-------EECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEEECC-CEEEEECCCCeEEEEECCCCcEE----EEEEE-CCCC-------cccccceeEEEE-CCEEEEecCCCCeEE
Confidence 2355677 54555567899999999886544 22221 0000 001236778887 6754444433 8999
Q ss_pred EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEeCCCcEEEEecCCC
Q 012721 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~~dg~i~iw~~~~~ 416 (457)
+.|..+ ++.+..+.................. ....++|+|+++ +++++...+.+++-++...
T Consensus 176 vID~~t-g~V~~~I~~~g~~~~~~~~~~~~~~--v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKD-GTLLGWILLPNLRKKLIDEGFRDID--VLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTT-CCEEEEEECHHHHHHHHHTTCTTCC--CEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCC-CcEEEEEECCCcccccccccccccC--ceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 999986 7888777643110000000000000 015899999976 5556667889999888765
No 239
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.63 E-value=2.2e-05 Score=67.54 Aligned_cols=215 Identities=7% Similarity=-0.015 Sum_probs=126.8
Q ss_pred ccCC--ceEEEEECCCCCEEEEEeC--CCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccc
Q 012721 30 QDVD--IVSAIEFDKTGDYLAVGDR--GGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFD 105 (457)
Q Consensus 30 ~h~~--~V~~~~~s~~~~~latg~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 105 (457)
.|.. ....++|++++.+.++.+. ++.|.++|+.+++.. ..+.-...
T Consensus 16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~---------------------------~~i~l~~~--- 65 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVE---------------------------NIHKMDDS--- 65 (266)
T ss_dssp ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEE---------------------------EEEECCTT---
T ss_pred ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEE---------------------------EEEecCCC---
Confidence 3543 3678999998765555443 578999999988752 22211110
Q ss_pred ccccccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceec
Q 012721 106 YLKSLEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHG 185 (457)
Q Consensus 106 ~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (457)
.-...+.+ . .+.+.++.-.++.+.++|..+.+....+... .
T Consensus 66 --------~fgeGi~~--~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~--------------------------- 106 (266)
T 2iwa_A 66 --------YFGEGLTL--L-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-M--------------------------- 106 (266)
T ss_dssp --------CCEEEEEE--E-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-S---------------------------
T ss_pred --------cceEEEEE--e-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-C---------------------------
Confidence 11234555 2 2334444557899999999988766554321 0
Q ss_pred cCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc
Q 012721 186 YHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD 264 (457)
Q Consensus 186 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 264 (457)
+ . ...+++|++.++.+ .++.|.++|.. ..+....+.+.. -.
T Consensus 107 ------------------------------~---~--g~glt~Dg~~l~vs~gs~~l~viD~~-t~~v~~~I~Vg~--~~ 148 (266)
T 2iwa_A 107 ------------------------------K---D--GWGLATDGKILYGSDGTSILYEIDPH-TFKLIKKHNVKY--NG 148 (266)
T ss_dssp ------------------------------S---S--CCEEEECSSSEEEECSSSEEEEECTT-TCCEEEEEECEE--TT
T ss_pred ------------------------------C---C--eEEEEECCCEEEEECCCCeEEEEECC-CCcEEEEEEECC--CC
Confidence 0 1 12244578888888 88999999998 445554443220 00
Q ss_pred CCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEE
Q 012721 265 DLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLS 344 (457)
Q Consensus 265 ~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s 344 (457)
..-..+..+.|. ++ .+.+....++.|.+.|..+++... .+......+.....-..-....+.++|+|+++.++.
T Consensus 149 ~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~----~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 149 HRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLG----WILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp EECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEE----EEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred cccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEE----EEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 111236778888 66 777777778999999999987542 221100000000000000135689999999876665
Q ss_pred -Eec-CcEEEEeccC
Q 012721 345 -RDY-MNLKLWDIRM 357 (457)
Q Consensus 345 -~~~-~~i~~wd~~~ 357 (457)
+.. +.+...++..
T Consensus 223 Tgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 223 TGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTCSEEEEEEEEE
T ss_pred ECCCCCeEEEEEEec
Confidence 444 8888888864
No 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.56 E-value=0.00033 Score=64.48 Aligned_cols=176 Identities=10% Similarity=0.025 Sum_probs=100.1
Q ss_pred eeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEEc
Q 012721 221 INSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM 297 (457)
Q Consensus 221 v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd~ 297 (457)
...+++.+.+..|+. - ..+.|.+.+++ ......+ +.........++++|.+..++++-... +.|..+++
T Consensus 161 p~glavd~~~g~lY~~d~~~~~I~~~~~d-g~~~~~l-------~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~ 232 (386)
T 3v65_B 161 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 232 (386)
T ss_dssp CCCEEEETTTTEEEEEETTTTEEEECBTT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEEeCCCeEEEEcCCCCeEEEEeCC-CCceEEe-------ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeC
Confidence 356778775555544 4 67889988887 3322222 122335578999998763455554445 78888887
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeecccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 375 (457)
...... .+... ....-..|+++|++..|..++. +.|..+|+. +.....+.......+
T Consensus 233 dG~~~~----~~~~~-------------~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P-- 291 (386)
T 3v65_B 233 DGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP-- 291 (386)
T ss_dssp TSCSCE----EEECS-------------SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT--SCSCEEEECSSCSSE--
T ss_pred CCCCcE----EEEEC-------------CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC--CCeeEEEEECCCCCc--
Confidence 653211 11111 0134678999988777776653 889889886 333222221111000
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee-eeccCC
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAAP 439 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~-~~~p~~ 439 (457)
..+++. ++..+++-...+.|..++..+|+. ..++.........+ .++|..
T Consensus 292 ------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~-~~~i~~~~~~p~gi~v~~~~~ 342 (386)
T 3v65_B 292 ------------FAITVF-EDSLYWTDWHTKSINSANKFTGKN-QEIIRNKLHFPMDIHTLHPQR 342 (386)
T ss_dssp ------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCS-CEEEECSCSCCCCEEEESGGG
T ss_pred ------------eEEEEE-CCEEEEeeCCCCeEEEEECCCCcc-eEEEccCCCCCceEEEEchhc
Confidence 367773 445555666678899999777743 44444333333334 445544
No 241
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.54 E-value=0.00049 Score=62.42 Aligned_cols=177 Identities=11% Similarity=0.031 Sum_probs=101.3
Q ss_pred eeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEEc
Q 012721 221 INSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVDM 297 (457)
Q Consensus 221 v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd~ 297 (457)
...+++.+.+..|+ +- ..+.|.+.+++ ......+ ..........++++|.+..++++-... +.|..+++
T Consensus 118 p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~ 189 (349)
T 3v64_C 118 PGGLAVDWVHDKLYWTDSGTSRIEVANLD-GAHRKVL-------LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM 189 (349)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEE-------ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred ccEEEEecCCCeEEEEcCCCCeEEEEcCC-CCceEEE-------EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence 45788887555554 44 77899999988 3322222 122334578999999663555555555 78888887
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeecccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 375 (457)
...... .+... ....-..++++|++..|..++. +.|..+|+. +.....+.......+
T Consensus 190 dG~~~~----~~~~~-------------~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~P-- 248 (349)
T 3v64_C 190 DGSGRR----IIADT-------------HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD--GSHRKAVISQGLPHP-- 248 (349)
T ss_dssp TSCSCE----ESCCS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSSCSSE--
T ss_pred CCCCcE----EEEEC-------------CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC--CCceEEEEeCCCCCc--
Confidence 653211 11111 0134688999998877776653 889999986 333222221111000
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 439 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 439 (457)
..+++. ++...++-...+.|..++..+|+........-..|.--..++|..
T Consensus 249 ------------~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v~~~~~ 299 (349)
T 3v64_C 249 ------------FAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHTLHPQR 299 (349)
T ss_dssp ------------EEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEECSCSCCCCEEEECGGG
T ss_pred ------------eEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEeccCCCCCceEEEEcccc
Confidence 367773 455555555678898888777744333333333344334455554
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.52 E-value=8.8e-06 Score=73.30 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=105.7
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
.+.++...+++.+++...++.|..+|.. .. ....+ ......+.++...+++ .+++ ++ +.|..+| .+
T Consensus 138 ~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~-~~~~~-------~~~~~~~~~~~~d~~g-~l~v-~t--~~l~~~d-~~ 203 (330)
T 3hxj_A 138 IYATPIVSEDGTIYVGSNDNYLYAINPD-GT-EKWRF-------KTNDAITSAASIGKDG-TIYF-GS--DKVYAIN-PD 203 (330)
T ss_dssp CCSCCEECTTSCEEEECTTSEEEEECTT-SC-EEEEE-------ECSSCCCSCCEECTTC-CEEE-ES--SSEEEEC-TT
T ss_pred eeeeeEEcCCCEEEEEcCCCEEEEECCC-CC-EeEEE-------ecCCCceeeeEEcCCC-EEEE-Ee--CEEEEEC-CC
Confidence 3455666767775554488999999987 33 33222 1123445666777777 5444 44 7789999 55
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (457)
++.. +.. ......+.++...++|.+.+...++.|..+|.. ++.+..+.......
T Consensus 204 g~~~------~~~-----------~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~--g~~~~~~~~~~~~~------- 257 (330)
T 3hxj_A 204 GTEK------WNF-----------YAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD--GTEKWRFKTGKRIE------- 257 (330)
T ss_dssp SCEE------EEE-----------CCSSCCCSCCEECTTSCEEEEETTTEEEEECTT--SCEEEEEECSSCCC-------
T ss_pred CcEE------EEE-----------ccCCcceeceEECCCCeEEEEcCCCeEEEECCC--CCEeEEeeCCCCcc-------
Confidence 5322 111 001235777888888876665556888888753 55555554333221
Q ss_pred CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceeccc
Q 012721 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRSSL 446 (457)
Q Consensus 380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~~~ 446 (457)
..+.+.+++ .|..++.+|.|..+|. ++ +...........+.++...+++.....+.
T Consensus 258 --------~~~~~~~~g-~l~v~t~~ggl~~~d~-~g-~~~~~~~~~~~~~~~~~~d~~g~l~~gt~ 313 (330)
T 3hxj_A 258 --------SSPVIGNTD-TIYFGSYDGHLYAINP-DG-TEKWNFETGSWIIATPVIDENGTIYFGTR 313 (330)
T ss_dssp --------SCCEECTTS-CEEEECTTCEEEEECT-TS-CEEEEEECSSCCCSCCEECTTCCEEEECT
T ss_pred --------ccceEcCCC-eEEEecCCCCEEEECC-CC-cEEEEEEcCCccccceEEcCCCEEEEEcC
Confidence 245555555 4666888888999995 56 44455554555667777767776655533
No 243
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.49 E-value=4.5e-05 Score=75.83 Aligned_cols=92 Identities=9% Similarity=0.022 Sum_probs=59.8
Q ss_pred CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeec
Q 012721 290 GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIH 368 (457)
Q Consensus 290 g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~ 368 (457)
|.|..||+.+++.. +.. . +..++....+..++.+++.++ ++.+++||.++ ++.+..+...
T Consensus 457 g~l~A~D~~tG~~~------W~~-~-----------~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~t-G~~lw~~~~~ 517 (677)
T 1kb0_A 457 GRLLAWDPVAQKAA------WSV-E-----------HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAAT-GEKLWEAPTG 517 (677)
T ss_dssp EEEEEEETTTTEEE------EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEECS
T ss_pred cEEEEEeCCCCcEE------eec-C-----------CCCCCcCcceEeCCCEEEEECCCCcEEEEECCC-CceeeeeeCC
Confidence 78999999988643 222 0 112334445666777887776 49999999987 8888888765
Q ss_pred cccccccccccCCCCccccceEEEcCCCcEEE-EEeC----------------CCcEEEEecC
Q 012721 369 EHLRPKLCDLYNNDSIFDKFECSVSGDGLHFA-TGSY----------------SNLLRIFSHG 414 (457)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~-s~~~----------------dg~i~iw~~~ 414 (457)
..... .-+.|..+|+.++ ..+. .+.+..|.+.
T Consensus 518 ~~~~~--------------~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 518 TGVVA--------------APSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVG 566 (677)
T ss_dssp SCCCS--------------CCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEET
T ss_pred CCccc--------------CCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEecc
Confidence 54321 2467777886444 3222 3577778776
No 244
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.48 E-value=0.00043 Score=59.06 Aligned_cols=220 Identities=11% Similarity=0.138 Sum_probs=124.5
Q ss_pred CcEEEEEEEecCCCC-EEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCcccc
Q 012721 114 EKINRVRWCAAPNGS-MFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTE 192 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~-~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (457)
..+..++|. +++. ++++...++.|...|.. ++....+.+.
T Consensus 27 ~~lSGla~~--~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~------------------------------------ 67 (255)
T 3qqz_A 27 NNISSLTWS--AQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLD------------------------------------ 67 (255)
T ss_dssp SCEEEEEEE--TTTTEEEEEEETTEEEEEEETT-CCEEEEEECS------------------------------------
T ss_pred cCcceeEEe--CCCCEEEEEECCCCeEEEEeCC-CCEEEEEecC------------------------------------
Confidence 569999995 5544 55557778888888887 6655443211
Q ss_pred ccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcc--eeeeeecCCCcccCCCCc
Q 012721 193 NMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQ--CFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 193 ~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 269 (457)
-....-.+++.+++.++++. .++.+.++++..... .......... .......
T Consensus 68 ------------------------g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~-~~~~N~g 122 (255)
T 3qqz_A 68 ------------------------FVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQ-ESPTNCG 122 (255)
T ss_dssp ------------------------SCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCS-SCCCSSC
T ss_pred ------------------------CCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccc-cccccCC
Confidence 11346678888888877777 889999999874443 1222221100 1123455
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y- 347 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~- 347 (457)
...++|+|.+ +.|.++.+.....+|.+.. ........+... .. ... ..+...+.+++++|....|..-+ .
T Consensus 123 ~EGLA~d~~~-~~L~va~E~~p~~i~~~~g-~~~~~~l~i~~~-~~---~~~--~~~~~d~S~l~~dp~tg~lliLS~~s 194 (255)
T 3qqz_A 123 FEGLAYSRQD-HTFWFFKEKNPIEVYKVNG-LLSSNELHISKD-KA---LQR--QFTLDDVSGAEFNQQKNTLLVLSHES 194 (255)
T ss_dssp CEEEEEETTT-TEEEEEEESSSEEEEEEES-TTCSSCCEEEEC-HH---HHH--TCCSSCCCEEEEETTTTEEEEEETTT
T ss_pred cceEEEeCCC-CEEEEEECcCCceEEEEcc-cccCCceeeecc-hh---hcc--ccccCCceeEEEcCCCCeEEEEECCC
Confidence 7899999998 6666666554555655541 100001111110 00 000 00123578999999755555443 3
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~ 414 (457)
..+..+|.. ++.+..+.-..+.-... ..+-.--.++|.++|+ |+..++-+.++.+.-.
T Consensus 195 ~~L~~~d~~--g~~~~~~~L~~g~~~l~------~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 195 RALQEVTLV--GEVIGEMSLTKGSRGLS------HNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TEEEEECTT--CCEEEEEECSTTGGGCS------SCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CeEEEEcCC--CCEEEEEEcCCccCCcc------cccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 888888875 56665554332210000 0000014799999998 5555887877777543
No 245
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.48 E-value=0.00032 Score=62.37 Aligned_cols=187 Identities=11% Similarity=0.076 Sum_probs=102.9
Q ss_pred CeeEEEeCCCCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
....+++.++++++++. ... .|..+|.. .+....+... . .......++..+++ ..+++-..++.|..+|
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~-~g~~~~~~~~-----~-~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d 144 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKS-DGTVETLLTL-----P-DAIFLNGITPLSDT-QYLTADSYRGAIWLID 144 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECT-TSCEEEEEEC-----T-TCSCEEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCC-CCeEEEEEeC-----C-CccccCcccccCCC-cEEEEECCCCeEEEEe
Confidence 46789999999977765 332 46667765 4443333221 1 11223445555555 5566555689999999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCc--eeEeeeccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTP--VATFKIHEHLR 372 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~--~~~~~~~~~~~ 372 (457)
...++... ..... ... .......-.....+ +|++++|..++ . +.|..+++...++. ...+......
T Consensus 145 ~~~~~~~v---~~~~~--~~~--~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P- 214 (306)
T 2p4o_A 145 VVQPSGSI---WLEHP--MLA--RSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNI- 214 (306)
T ss_dssp TTTTEEEE---EEECG--GGS--CSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCC-
T ss_pred CCCCcEeE---EEECC--ccc--cccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCC-
Confidence 87542100 00000 000 00000001223445 78888777664 3 89999998632221 1111111111
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE--EecCCCcceeeeec---cCCcc
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT--VEAGKNENRKPILQ---AAPRA 441 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~v~~~~~~---p~~~~ 441 (457)
..++++++|+++++....+.|.+++.. + +.... +........+++|. |++..
T Consensus 215 ---------------~gi~vd~dG~l~va~~~~~~V~~~~~~-G-~~~~~~~~~~~~~~p~~~a~~g~~~d~~~ 271 (306)
T 2p4o_A 215 ---------------DDFAFDVEGNLYGATHIYNSVVRIAPD-R-STTIIAQAEQGVIGSTAVAFGQTEGDCTA 271 (306)
T ss_dssp ---------------SSEEEBTTCCEEEECBTTCCEEEECTT-C-CEEEEECGGGTCTTEEEEEECCSTTTTTE
T ss_pred ---------------CCeEECCCCCEEEEeCCCCeEEEECCC-C-CEEEEeecccccCCceEEEEecccCCCCE
Confidence 479999999987777778899999975 5 33222 22223457888998 77543
No 246
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.46 E-value=5e-05 Score=64.52 Aligned_cols=193 Identities=8% Similarity=0.096 Sum_probs=114.8
Q ss_pred ceEEEEECCCCCEEEEEeCCC--eEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeeccCCcccccccccc
Q 012721 34 IVSAIEFDKTGDYLAVGDRGG--RVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQSHEPEFDYLKSLE 111 (457)
Q Consensus 34 ~V~~~~~s~~~~~latg~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 111 (457)
-...+.|+ ++.++.+.+.+| .|+++|+++++.. ..+.-.
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~---------------------------~~~~l~----------- 84 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTL---------------------------QQIELG----------- 84 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEE---------------------------EEEECC-----------
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEE---------------------------EEEecC-----------
Confidence 34789998 677777777766 8999999988752 222111
Q ss_pred ccCcE--EEEEEEecCCCCEEEE-eeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 112 IEEKI--NRVRWCAAPNGSMFIL-STNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 112 ~~~~V--~~v~~~~s~~~~~l~s-~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
... -.+.. .++.|.. .-.++.+.+||..+.+....+....
T Consensus 85 --~~~FgeGit~----~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~------------------------------- 127 (262)
T 3nol_A 85 --KRYFGEGISD----WKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDG------------------------------- 127 (262)
T ss_dssp --TTCCEEEEEE----ETTEEEEEESSSSEEEEEETTTCCEEEEEECSS-------------------------------
T ss_pred --CccceeEEEE----eCCEEEEEEeeCCEEEEEECccCcEEEEEECCC-------------------------------
Confidence 122 23444 2334444 4468899999999887776554221
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLT 267 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 267 (457)
.=..++ ++++.|+.+ .++.|.++|.. ..+....+.+. ..+..
T Consensus 128 -------------------------------eG~glt--~dg~~L~~SdGs~~i~~iDp~-T~~v~~~I~V~---~~g~~ 170 (262)
T 3nol_A 128 -------------------------------EGWGLT--HNDQYLIMSDGTPVLRFLDPE-SLTPVRTITVT---AHGEE 170 (262)
T ss_dssp -------------------------------CCCCEE--ECSSCEEECCSSSEEEEECTT-TCSEEEEEECE---ETTEE
T ss_pred -------------------------------CceEEe--cCCCEEEEECCCCeEEEEcCC-CCeEEEEEEec---cCCcc
Confidence 112233 467777777 78899999998 45555544321 11111
Q ss_pred -CceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 268 -EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 268 -~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
..+..+.|. +| .+.+..-.++.|.+.|.++++.. ..+....-.+... ....-....+.++|+|+++.|+..+
T Consensus 171 ~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~V~----~~Id~~~L~~~~~-~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 171 LPELNELEWV-DG-EIFANVWQTNKIVRIDPETGKVT----GIIDLNGILAEAG-PLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp CCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCBEE----EEEECTTGGGGSC-SCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred ccccceeEEE-CC-EEEEEEccCCeEEEEECCCCcEE----EEEECCcCccccc-cccCcCCceEEEEEcCCCCEEEEEC
Confidence 334567776 66 77777778899999999998765 2222100000000 0001123578999999877666544
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.39 E-value=0.0014 Score=66.74 Aligned_cols=198 Identities=11% Similarity=0.055 Sum_probs=111.7
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCC-cccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPS-NMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
..|.++...++|.+.+...+ .|.+||.. .+.... +...+. ...-....|.++...++| . |..|+.++-|..|+.
T Consensus 263 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~-~~~~~~-~~~~~~~~~~l~~~~i~~i~~D~~g-~-lWigt~~~Gl~~~~~ 337 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIGTFN-DLNIYHEG-TDSFAS-YSSNPVENGSLSQRSVRSIFMDSQG-G-MWLGTYFGGLNYYHP 337 (795)
T ss_dssp SBEEEEEECTTSCEEEEESS-CEEEEETT-TTEEEE-ECCCTTSTTSCSSSCEEEEEECTTS-C-EEEEESSSCEEEECG
T ss_pred CeEEEEEEcCCCCEEEEeCC-hhheEcCC-CCeEEE-EecCCCCCCCCCCCcEEEEEEeCCc-C-EEEEECCCCeEEeCC
Confidence 46899999888877666555 68889977 333322 211110 011134679999999988 5 455667777888987
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecc-ccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHE-HLRPKLC 376 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~ 376 (457)
.+.... .+.. .+. .. .-....|.++...++|.+.+...++-|..||..+ + ....+.... .....
T Consensus 338 ~~~~~~-----~~~~---~~~-~~--~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~-~-~~~~~~~~~~~~~~~-- 402 (795)
T 4a2l_A 338 IRNRFK-----NIRN---IPY-KN--SLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPIT-Q-RFTSYTLQEDESARG-- 402 (795)
T ss_dssp GGGSSE-----EECC---CTT-SS--SCSCSSEEEEEECTTSCEEEEESSSCEEEECTTT-C-CEEEECCC------C--
T ss_pred Ccccce-----EEcC---CCC-CC--CCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCC-C-cEEEEecCCCCcccC--
Confidence 654311 1110 000 00 0013569999999988766644457889998764 2 233332111 00000
Q ss_pred cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe-----cCCCcceeeeeccCCccee
Q 012721 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE-----AGKNENRKPILQAAPRARR 443 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~-----~~~~~v~~~~~~p~~~~~~ 443 (457)
.... .|.++...+++..|..|+.++-|.+||..+++ . ..+. .....|.++...+++..-.
T Consensus 403 --l~~~---~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~-~-~~~~~~~~~l~~~~v~~i~~d~~g~lwi 467 (795)
T 4a2l_A 403 --IGSN---NIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ-V-ENFNQRNSQLVNENVYAILPDGEGNLWL 467 (795)
T ss_dssp --CSCS---CEEEEEEETTTTEEEEEETTTEEEEEETTTCC-E-EEECTTTSCCSCSCEEEEEECSSSCEEE
T ss_pred --CCCc---cEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc-E-EEeecCCCCcCCCeeEEEEECCCCCEEE
Confidence 0001 12578888888856667777779999988772 2 2222 1234566666666555433
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.39 E-value=0.00014 Score=72.12 Aligned_cols=185 Identities=14% Similarity=0.129 Sum_probs=102.1
Q ss_pred eEEEeCCCCCEEEEe-CCC-------------------eEEEEEcCCCcceeeeeecCCCcccC--CCCceEEEEEecCC
Q 012721 222 NSISNNSDCETFVSA-DDL-------------------RINLWNLEISDQCFNIVDMKPSNMDD--LTEVITSAEFHPIY 279 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~-~d~-------------------~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~v~~~p~~ 279 (457)
..++++|+...++.+ .++ .|..+|.+ .++..-.+...+..... ...+.....+..+|
T Consensus 233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~-tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPD-TGKLAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTT-TCCEEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCC-CCceeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 457788877788777 655 48999998 44444333221110000 11233333344466
Q ss_pred cc---EEEEEccCCeEEEEEccCCeeeccccc---cccccc----ccc--------Cccc--ceecccc--ceEEEEEcc
Q 012721 280 CN---LLAYSSSRGFVRLVDMRQSALCDHSAR---ILRDAA----ESH--------GSKS--FFTEIIA--SISDIKFAN 337 (457)
Q Consensus 280 ~~---~l~~~~~dg~i~lwd~~~~~~~~~~~~---~~~~~~----~~~--------~~~~--~~~~h~~--~v~~~~~s~ 337 (457)
+ .++.++.+|.+.++|..+++....... .+.... ..+ ..+. .+.+..+ .-..++++|
T Consensus 312 -~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp 390 (668)
T 1kv9_A 312 -KPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNP 390 (668)
T ss_dssp -EEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEET
T ss_pred -cEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECC
Confidence 4 688999999999999999976521000 000000 000 0000 0000000 011256777
Q ss_pred CCCeEEEE------------------------------------ec-CcEEEEeccCCCCceeEeeeccccccccccccC
Q 012721 338 DGQHLLSR------------------------------------DY-MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYN 380 (457)
Q Consensus 338 ~g~~l~s~------------------------------------~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (457)
+..+++.. .. |.|..||+.+ ++.+-........
T Consensus 391 ~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~t-G~~~W~~~~~~~~--------- 460 (668)
T 1kv9_A 391 GTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVK-QKAAWKVPYPTHW--------- 460 (668)
T ss_dssp TTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTT-TEEEEEEEESSSC---------
T ss_pred CCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCC-CcEEEEccCCCCC---------
Confidence 65554431 12 7788999976 6766555543322
Q ss_pred CCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 381 NDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 381 ~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
....+...+.+++.++.|+.++.||.++| +.+..++..
T Consensus 461 -------~~~~~~t~gg~vf~g~~dg~l~a~d~~tG-~~l~~~~~~ 498 (668)
T 1kv9_A 461 -------NGGTLSTAGNLVFQGTAAGQMHAYSADKG-EALWQFEAQ 498 (668)
T ss_dssp -------CCCEEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECS
T ss_pred -------cCceeEeCCCEEEEECCcccchhhhhhcC-hhheEecCC
Confidence 23445557788999999999999999999 555555443
No 249
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.38 E-value=5.2e-05 Score=64.40 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=108.5
Q ss_pred CeeEEEeCCCCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
....+.|+ ++.++.+. .+| .|+.+|++ .++....+.+. .........+++..+.+..-.++.+.+||
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~-Tgkv~~~~~l~--------~~~FgeGit~~g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIE-SGKTLQQIELG--------KRYFGEGISDWKDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTT-TCCEEEEEECC--------TTCCEEEEEEETTEEEEEESSSSEEEEEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECC-CCcEEEEEecC--------CccceeEEEEeCCEEEEEEeeCCEEEEEE
Confidence 34788998 66555554 554 99999999 56666554332 12222222333425555556799999999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 375 (457)
..+.+.. ..+.. .. ....++++++.|+.++. +.|.++|..+ .+.+..+........
T Consensus 114 ~~t~~~~----~ti~~--------------~~--eG~glt~dg~~L~~SdGs~~i~~iDp~T-~~v~~~I~V~~~g~~-- 170 (262)
T 3nol_A 114 IRNLRQV----RSFNY--------------DG--EGWGLTHNDQYLIMSDGTPVLRFLDPES-LTPVRTITVTAHGEE-- 170 (262)
T ss_dssp TTTCCEE----EEEEC--------------SS--CCCCEEECSSCEEECCSSSEEEEECTTT-CSEEEEEECEETTEE--
T ss_pred CccCcEE----EEEEC--------------CC--CceEEecCCCEEEEECCCCeEEEEcCCC-CeEEEEEEeccCCcc--
Confidence 9987654 33322 01 11233466777776653 8899999986 677777665332110
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC------------CCcceeeeeccCCc
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG------------KNENRKPILQAAPR 440 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~v~~~~~~p~~~ 440 (457)
+.....+.|. +|...+..-.++.|.+.|.+++ +....+... ....+.+++.|+..
T Consensus 171 --------~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG-~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 171 --------LPELNELEWV-DGEIFANVWQTNKIVRIDPETG-KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp --------CCCEEEEEEE-TTEEEEEETTSSEEEEECTTTC-BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred --------ccccceeEEE-CCEEEEEEccCCeEEEEECCCC-cEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 0000246676 7765555556889999999999 555555432 12458889998754
No 250
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.37 E-value=0.00015 Score=73.19 Aligned_cols=73 Identities=14% Similarity=0.123 Sum_probs=42.2
Q ss_pred CeeEEEeCCCCCEEEEe----CCCeEEEEEcCCCccee--eeeecCCCcccCCCCceEEEEEecCCccEEEEEccC----
Q 012721 220 NINSISNNSDCETFVSA----DDLRINLWNLEISDQCF--NIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR---- 289 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~----~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d---- 289 (457)
....+.|+|||++|+.. ....|+++|+....... ..+ .........++.|+..+ .+++....+
T Consensus 272 ~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l------~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~ 344 (751)
T 2xe4_A 272 FSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIV------RPREKGVRYDVQMHGTS-HLVILTNEGGAVN 344 (751)
T ss_dssp CEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEES------SCCCTTCCEEEEEETTT-EEEEEECTTTCTT
T ss_pred eEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEe------ecCCCCceEEEeeeeCC-EEEEEeCCCCCCC
Confidence 45678999999988764 34578888987431112 221 22233455666655444 555555444
Q ss_pred CeEEEEEccC
Q 012721 290 GFVRLVDMRQ 299 (457)
Q Consensus 290 g~i~lwd~~~ 299 (457)
..|..+|+.+
T Consensus 345 ~~L~~~d~~~ 354 (751)
T 2xe4_A 345 HKLLIAPRGQ 354 (751)
T ss_dssp CEEEEEETTS
T ss_pred cEEEEEcCCC
Confidence 3566666654
No 251
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.36 E-value=5.8e-05 Score=67.83 Aligned_cols=219 Identities=8% Similarity=-0.054 Sum_probs=116.0
Q ss_pred CCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccccceEEEeccCcc
Q 012721 126 NGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSV 205 (457)
Q Consensus 126 ~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 205 (457)
++ .+..++.++.|..+|.. ++.......... .+.++.. ..++.++.... ++.+..++.+
T Consensus 107 ~~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~-~~~g~l~vgt~--------------~~~l~~~d~~--- 165 (330)
T 3hxj_A 107 ED-ILYVTSMDGHLYAINTD-GTEKWRFKTKKA-IYATPIV-SEDGTIYVGSN--------------DNYLYAINPD--- 165 (330)
T ss_dssp TT-EEEEECTTSEEEEECTT-SCEEEEEECSSC-CCSCCEE-CTTSCEEEECT--------------TSEEEEECTT---
T ss_pred CC-EEEEEecCCEEEEEcCC-CCEEEEEcCCCc-eeeeeEE-cCCCEEEEEcC--------------CCEEEEECCC---
Confidence 55 45667777888888888 665555543221 1111111 11122211111 1234444443
Q ss_pred ccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEE
Q 012721 206 HARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAY 285 (457)
Q Consensus 206 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~ 285 (457)
.+.+..+ ......+.++...+++.+++.+ +.|..+| . .+...... ......+.++...++| . |..
T Consensus 166 -g~~~~~~-~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~-~g~~~~~~-------~~~~~~~~~~~~~~~g-~-l~v 230 (330)
T 3hxj_A 166 -GTEKWRF-KTNDAITSAASIGKDGTIYFGS--DKVYAIN-P-DGTEKWNF-------YAGYWTVTRPAISEDG-T-IYV 230 (330)
T ss_dssp -SCEEEEE-ECSSCCCSCCEECTTCCEEEES--SSEEEEC-T-TSCEEEEE-------CCSSCCCSCCEECTTS-C-EEE
T ss_pred -CCEeEEE-ecCCCceeeeEEcCCCEEEEEe--CEEEEEC-C-CCcEEEEE-------ccCCcceeceEECCCC-e-EEE
Confidence 1111111 1223456677777788766655 8899999 4 33333221 2233457777888876 4 455
Q ss_pred EccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEe
Q 012721 286 SSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATF 365 (457)
Q Consensus 286 ~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~ 365 (457)
++.++.|..+|... +.. ..+.. ....+..+.+.+++.+.+...++.|..+|. . ++.+..+
T Consensus 231 ~t~~~gl~~~~~~g-~~~----~~~~~-------------~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~-g~~~~~~ 290 (330)
T 3hxj_A 231 TSLDGHLYAINPDG-TEK----WRFKT-------------GKRIESSPVIGNTDTIYFGSYDGHLYAINP-D-GTEKWNF 290 (330)
T ss_dssp EETTTEEEEECTTS-CEE----EEEEC-------------SSCCCSCCEECTTSCEEEECTTCEEEEECT-T-SCEEEEE
T ss_pred EcCCCeEEEECCCC-CEe----EEeeC-------------CCCccccceEcCCCeEEEecCCCCEEEECC-C-CcEEEEE
Confidence 66678888887533 221 11111 011233455566675555444578999986 3 5666555
Q ss_pred eeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
......+ .++...+++. |..++.+|.+++...+..
T Consensus 291 ~~~~~~~---------------~~~~~d~~g~-l~~gt~~G~~~~~~~~~~ 325 (330)
T 3hxj_A 291 ETGSWII---------------ATPVIDENGT-IYFGTRNGKFYALFNLEH 325 (330)
T ss_dssp ECSSCCC---------------SCCEECTTCC-EEEECTTSCEEEEEC---
T ss_pred EcCCccc---------------cceEEcCCCE-EEEEcCCCeEEEEecccc
Confidence 4433222 4566767776 556888999998887644
No 252
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=0.0004 Score=58.45 Aligned_cols=209 Identities=8% Similarity=0.047 Sum_probs=118.4
Q ss_pred cceeeeeccCCccccccccccccCcEEEEEEEecCCCCEEEEeeCC--CeEEEEEecccceeEEEeecCCCceeeeeecc
Q 012721 91 YRYKTEFQSHEPEFDYLKSLEIEEKINRVRWCAAPNGSMFILSTND--KTIKLWKVRDQKVKKIKEMDHFPFVSSENTLL 168 (457)
Q Consensus 91 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~~~s~~~~~l~s~s~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (457)
++.+.++ .|++. .-...+.|. . +.++.+.+.+ ..|+.+|+.+++...........
T Consensus 9 ~~v~~~~-phd~~----------~ftqGL~~~--~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~--------- 65 (243)
T 3mbr_X 9 YRVVKRY-PHDTT----------AFTEGLFYL--R-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY--------- 65 (243)
T ss_dssp EEEEEEE-ECCTT----------CCEEEEEEE--T-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---------
T ss_pred eEEEEEc-CCCCc----------cccccEEEE--C-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---------
Confidence 4455555 66643 557889993 3 5566666665 48999999999887665432110
Q ss_pred ccccccccCCCCCceeccCCccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcC
Q 012721 169 AEKNFMNEHNPPSFAHGYHLEWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLE 247 (457)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~ 247 (457)
.--.+++. ++++++.. .++.+.+||.+
T Consensus 66 ---------------------------------------------------fgeGi~~~-~~~ly~ltw~~~~v~v~D~~ 93 (243)
T 3mbr_X 66 ---------------------------------------------------FGAGIVAW-RDRLIQLTWRNHEGFVYDLA 93 (243)
T ss_dssp ---------------------------------------------------CEEEEEEE-TTEEEEEESSSSEEEEEETT
T ss_pred ---------------------------------------------------ceeEEEEe-CCEEEEEEeeCCEEEEEECC
Confidence 01123333 23344445 89999999998
Q ss_pred CCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc
Q 012721 248 ISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII 327 (457)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 327 (457)
..+.+..+... +. + ..+ .+++ ..|+.+..++.|.++|..+.+.. +.+.. ...+. .-
T Consensus 94 -tl~~~~ti~~~-----~~-G--wgl--t~dg-~~L~vSdgs~~l~~iDp~t~~~~----~~I~V-~~~g~-------~~ 149 (243)
T 3mbr_X 94 -TLTPRARFRYP-----GE-G--WAL--TSDD-SHLYMSDGTAVIRKLDPDTLQQV----GSIKV-TAGGR-------PL 149 (243)
T ss_dssp -TTEEEEEEECS-----SC-C--CEE--EECS-SCEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------EC
T ss_pred -cCcEEEEEeCC-----CC-c--eEE--eeCC-CEEEEECCCCeEEEEeCCCCeEE----EEEEE-ccCCc-------cc
Confidence 56666654322 11 1 233 3566 55555566899999999987654 22221 00000 01
Q ss_pred cceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccc-cCCCCccccceEEEcCCCcEEEEEe
Q 012721 328 ASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL-YNNDSIFDKFECSVSGDGLHFATGS 403 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~s~~ 403 (457)
..++.+.+. +|+..+..- ...|.+.|..+ ++.+..+....-.-.. ... .....+. ..++++|+++.|+..+
T Consensus 150 ~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t-G~V~~~idl~~l~~~~-~~~~~~~~~vl--NGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 150 DNLNELEWV-NGELLANVWLTSRIARIDPAS-GKVVAWIDLQALVPDA-DALTDSTNDVL--NGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEEECTTT-CBEEEEEECGGGSTTT-TSCCCTTSSCE--EEEEEETTTTEEEEEE
T ss_pred ccceeeEEe-CCEEEEEECCCCeEEEEECCC-CCEEEEEECCcCcccc-ccccCCcCCce--EEEEEcCCCCEEEEEC
Confidence 245566665 566444432 38999999986 7887777644211000 000 0001111 6899999866555444
No 253
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.35 E-value=8.1e-05 Score=74.17 Aligned_cols=81 Identities=7% Similarity=-0.028 Sum_probs=52.0
Q ss_pred CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeee
Q 012721 289 RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 289 dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~ 367 (457)
+|.|..||+.+++.. +.. . +..++....+...+.+++.++ |+.++.||.++ ++.+.++..
T Consensus 454 ~g~l~A~D~~tG~~~------W~~-~-----------~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~t-G~~lw~~~~ 514 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAA------WEV-P-----------YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADT-GEKLWEQPA 514 (689)
T ss_dssp EEEEEEEETTTTEEE------EEE-E-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTT-CCEEEEEEC
T ss_pred ceeEEEEECCCCCeE------eEc-c-----------CCCCccCccceECCCEEEEECCCCcEEEEECCC-CccceeeeC
Confidence 377899999888643 221 0 011222334555677888876 49999999987 888888876
Q ss_pred ccccccccccccCCCCccccceEEEcCCCc-EEEEE
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATG 402 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~ 402 (457)
...... .-+.|..||+ |+++.
T Consensus 515 ~~~~~~--------------~p~ty~~~G~qyv~~~ 536 (689)
T 1yiq_A 515 ASGVMA--------------APVTYSVDGEQYVTFM 536 (689)
T ss_dssp SSCCCS--------------CCEEEEETTEEEEEEE
T ss_pred CCCccc--------------CceEEEECCEEEEEEE
Confidence 654321 2467778887 44443
No 254
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.34 E-value=0.00022 Score=65.47 Aligned_cols=135 Identities=9% Similarity=-0.032 Sum_probs=79.5
Q ss_pred CCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccc
Q 012721 230 CETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSAR 308 (457)
Q Consensus 230 ~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 308 (457)
+..++.+ .++.+..+|.+ .++..-... ......+... + ..++.++.++.|..+|..+++..
T Consensus 239 ~~~v~~~~~~g~l~~~d~~-tG~~~w~~~---------~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~~----- 300 (376)
T 3q7m_A 239 NGVVFALAYNGNLTALDLR-SGQIMWKRE---------LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVTL----- 300 (376)
T ss_dssp TTEEEEECTTSCEEEEETT-TCCEEEEEC---------CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCEE-----
T ss_pred CCEEEEEecCcEEEEEECC-CCcEEeecc---------CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcEE-----
Confidence 4556666 89999999998 444332211 1223344433 4 56777788999999999988643
Q ss_pred cccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccccccCCCCcccc
Q 012721 309 ILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDK 387 (457)
Q Consensus 309 ~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 387 (457)
+.. .... ...+...... +..|+.++ +|.|.++|..+ ++.+.........+.
T Consensus 301 -w~~-~~~~---------~~~~~~~~~~--~~~l~v~~~~g~l~~~d~~t-G~~~~~~~~~~~~~~-------------- 352 (376)
T 3q7m_A 301 -WTQ-SDLL---------HRLLTSPVLY--NGNLVVGDSEGYLHWINVED-GRFVAQQKVDSSGFQ-------------- 352 (376)
T ss_dssp -EEE-CTTT---------TSCCCCCEEE--TTEEEEECTTSEEEEEETTT-CCEEEEEECCTTCBC--------------
T ss_pred -Eee-cccC---------CCcccCCEEE--CCEEEEEeCCCeEEEEECCC-CcEEEEEecCCCcce--------------
Confidence 221 0000 0112222222 44566665 49999999986 777766654332211
Q ss_pred ceEEEcCCCcEEEEEeCCCcEEEEe
Q 012721 388 FECSVSGDGLHFATGSYSNLLRIFS 412 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~dg~i~iw~ 412 (457)
..... .+..|+.++.+|.|+.|+
T Consensus 353 ~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 353 TEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp SCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred eCCEE--ECCEEEEEeCCCEEEEEe
Confidence 12222 245678899999999987
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.31 E-value=0.00028 Score=68.59 Aligned_cols=77 Identities=6% Similarity=-0.042 Sum_probs=45.7
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
+.|..||+.+ ++.+-++...... ....+...+..++.++.||.|+.||.++| +.+..++...
T Consensus 444 g~l~a~D~~t-G~~~W~~~~~~~~----------------~~~~~~t~gg~v~~g~~dg~l~a~D~~tG-~~lw~~~~~~ 505 (571)
T 2ad6_A 444 GQIRAFDLTT-GKAKWTKWEKFAA----------------WGGTLYTKGGLVWYATLDGYLKALDNKDG-KELWNFKMPS 505 (571)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSBCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred CeEEEEECCC-CCEEEEecCCCCc----------------cceeEEECCCEEEEEcCCCeEEEEECCCC-CEEEEEeCCC
Confidence 6788888875 6666555433221 12223334567778999999999999999 4555554332
Q ss_pred C-cceeeeeccCCcce
Q 012721 428 N-ENRKPILQAAPRAR 442 (457)
Q Consensus 428 ~-~v~~~~~~p~~~~~ 442 (457)
. ....+.+.+++...
T Consensus 506 ~~~~~p~~~~~~G~~y 521 (571)
T 2ad6_A 506 GGIGSPMTYSFKGKQY 521 (571)
T ss_dssp CCCSCCEEEEETTEEE
T ss_pred CcEeeeEEEEECCEEE
Confidence 2 12233344555433
No 256
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.30 E-value=0.00094 Score=56.98 Aligned_cols=217 Identities=11% Similarity=0.142 Sum_probs=120.7
Q ss_pred CceEEEEECCCCC-EEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeee--eccCCcccccccc
Q 012721 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTE--FQSHEPEFDYLKS 109 (457)
Q Consensus 33 ~~V~~~~~s~~~~-~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~~~~~~~ 109 (457)
+.+..++|+|+++ ++++...++.|...|.. ++. +.. +.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v---------------------------~~~i~l~g~--------- 69 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL---------------------------IRTIPLDFV--------- 69 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE---------------------------EEEEECSSC---------
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE---------------------------EEEEecCCC---------
Confidence 4799999999765 55557778888888876 432 122 2221
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEE-eecCCCceeeeeeccccccccccCCCCCceeccCC
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIK-EMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHL 188 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (457)
...-.|++ .+++.++++.-.++.+.++++......... ....
T Consensus 70 ----~D~EGIa~--~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~------------------------------- 112 (255)
T 3qqz_A 70 ----KDLETIEY--IGDNQFVISDERDYAIYVISLTPNSEVKILKKIKI------------------------------- 112 (255)
T ss_dssp ----SSEEEEEE--CSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEEC-------------------------------
T ss_pred ----CChHHeEE--eCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeecc-------------------------------
Confidence 23667888 567766666556788888887654321111 0000
Q ss_pred ccccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCC--CcceeeeeecCCCcccC
Q 012721 189 EWTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEI--SDQCFNIVDMKPSNMDD 265 (457)
Q Consensus 189 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~ 265 (457)
.+. ..........++|+|+++.|.++ ......+|.++. ....+.+.+.+...-..
T Consensus 113 --------------------~~~--~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~ 170 (255)
T 3qqz_A 113 --------------------PLQ--ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQF 170 (255)
T ss_dssp --------------------CCS--SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTC
T ss_pred --------------------ccc--cccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhcccc
Confidence 000 01234557899999988777766 433344444431 11122222110000011
Q ss_pred CCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE
Q 012721 266 LTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR 345 (457)
Q Consensus 266 ~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~ 345 (457)
+...+.+++++|....+++.+..+..|..+|.... .. ..+.. ... ..-+..--..-..|+|.++|++.+++
T Consensus 171 ~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~----~~~~L-~~g---~~~l~~~~~qpEGia~d~~G~lyIvs 241 (255)
T 3qqz_A 171 TLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VI----GEMSL-TKG---SRGLSHNIKQAEGVAMDASGNIYIVS 241 (255)
T ss_dssp CSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EE----EEEEC-STT---GGGCSSCCCSEEEEEECTTCCEEEEE
T ss_pred ccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EE----EEEEc-CCc---cCCcccccCCCCeeEECCCCCEEEEc
Confidence 23457899999987578888888999999997754 22 11111 000 00000001356789999999865564
Q ss_pred ecCcEEEEe
Q 012721 346 DYMNLKLWD 354 (457)
Q Consensus 346 ~~~~i~~wd 354 (457)
.-+.++.+.
T Consensus 242 E~n~~y~f~ 250 (255)
T 3qqz_A 242 EPNRFYRFT 250 (255)
T ss_dssp TTTEEEEEE
T ss_pred CCceEEEEE
Confidence 336555554
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.27 E-value=0.00085 Score=60.08 Aligned_cols=182 Identities=9% Similarity=-0.001 Sum_probs=102.7
Q ss_pred CeeEEEeCC-CCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEec-CCccEEEEEcc--------
Q 012721 220 NINSISNNS-DCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHP-IYCNLLAYSSS-------- 288 (457)
Q Consensus 220 ~v~~~~~~~-~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p-~~~~~l~~~~~-------- 288 (457)
....+++.+ +++++++...+.|..+|.. .+.. ..+.. ...+ .......+++.+ +| ++.++-..
T Consensus 81 ~p~gi~~~~~~g~l~v~d~~~~i~~~d~~-~g~~-~~~~~---~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~ 154 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIVDCYYHLSVVGSE-GGHA-TQLAT---SVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGV 154 (322)
T ss_dssp CEEEEEEETTTTEEEEEETTTEEEEECTT-CEEC-EEEES---EETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCH
T ss_pred CCceEEEcCCCCcEEEEECCCCEEEEeCC-CCEE-EEecc---cCCCCcccccceEEEecCCC-EEEEECCccccccccc
Confidence 467889987 6655555455568888876 3322 22110 0111 123467899999 88 76665432
Q ss_pred ---------CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccC
Q 012721 289 ---------RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRM 357 (457)
Q Consensus 289 ---------dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~ 357 (457)
++.|..||..+++.. ..... ......++++|+|++|..++ . +.|..|++..
T Consensus 155 ~~~~~~~~~~g~v~~~d~~~~~~~----~~~~~--------------~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 155 QQIMDTSDKTGRLIKYDPSTKETT----LLLKE--------------LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp HHHHHHTCCCEEEEEEETTTTEEE----EEEEE--------------ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ceehcccCCCceEEEEeCCCCEEE----EeccC--------------CccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 367888887665422 11111 12346799999998776653 3 8999999863
Q ss_pred CC-CceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeC----------CCcEEEEecCCCCceeeEEecC
Q 012721 358 DS-TPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY----------SNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 358 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~----------dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
.. .....+....++ ..+++.++|++.++... .+.|..+|.. + +....+...
T Consensus 217 ~~~~~~~~~~~~~gP----------------~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G-~~~~~~~~~ 278 (322)
T 2fp8_A 217 PKKGTAEVLVKIPNP----------------GNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-G-NILEVIPLP 278 (322)
T ss_dssp TTTTCEEEEEECSSE----------------EEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-S-CEEEEEECC
T ss_pred CcCCccceEEeCCCC----------------CCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-C-CEEEEEECC
Confidence 11 111122111111 47899999987766544 4667788764 4 444444433
Q ss_pred C----CcceeeeeccCCcceec
Q 012721 427 K----NENRKPILQAAPRARRS 444 (457)
Q Consensus 427 ~----~~v~~~~~~p~~~~~~~ 444 (457)
. ..+..+.+ .++.....
T Consensus 279 ~g~~~~~~~~~~~-~~g~L~v~ 299 (322)
T 2fp8_A 279 PPFAGEHFEQIQE-HDGLLYIG 299 (322)
T ss_dssp TTTTTSCCCEEEE-ETTEEEEE
T ss_pred CCCccccceEEEE-eCCEEEEe
Confidence 2 33455555 34444443
No 258
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.26 E-value=0.0059 Score=62.13 Aligned_cols=286 Identities=10% Similarity=0.078 Sum_probs=160.6
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCccCCCcccchhhhhhcccccccCCCccceeeeec-cCCccccccc-c
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGKNTPNQHISRSELEKQMDFTSTSHPEYRYKTEFQ-SHEPEFDYLK-S 109 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~-~ 109 (457)
...|.++...++|++-+ |+.++-|..|+..++... .+. .... .. .
T Consensus 356 ~~~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~~~----------------------------~~~~~~~~----~~~~ 402 (795)
T 4a2l_A 356 DNVVSCIVEDKDKNLWI-GTNDGGLNLYNPITQRFT----------------------------SYTLQEDE----SARG 402 (795)
T ss_dssp CSSEEEEEECTTSCEEE-EESSSCEEEECTTTCCEE----------------------------EECCC----------C
T ss_pred CCeeEEEEECCCCCEEE-EECCCCeEEEcCCCCcEE----------------------------EEecCCCC----cccC
Confidence 45799999999887654 666656888887654321 110 0000 00 0
Q ss_pred ccccCcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCc
Q 012721 110 LEIEEKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLE 189 (457)
Q Consensus 110 ~~~~~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (457)
+ ....|.++.. ..++..|..|+.++-|.+|+..+++........ .
T Consensus 403 l-~~~~v~~i~~--d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~--~------------------------------ 447 (795)
T 4a2l_A 403 I-GSNNIKAVYV--DEKKSLVYIGTHAGGLSILHRNSGQVENFNQRN--S------------------------------ 447 (795)
T ss_dssp C-SCSCEEEEEE--ETTTTEEEEEETTTEEEEEETTTCCEEEECTTT--S------------------------------
T ss_pred C-CCccEEEEEE--cCCCCEEEEEeCcCceeEEeCCCCcEEEeecCC--C------------------------------
Confidence 0 0146888887 567764677787777999998877654321000 0
Q ss_pred cccccceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCc
Q 012721 190 WTENMATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEV 269 (457)
Q Consensus 190 ~~~~~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 269 (457)
......|.++...+++.+.+... +.|.+||.. .+..... ......-.-....
T Consensus 448 -------------------------~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~-~~~~~~~-~~~~~~~~~~~~~ 499 (795)
T 4a2l_A 448 -------------------------QLVNENVYAILPDGEGNLWLGTL-SALVRFNPE-QRSFTTI-EKEKDGTPVVSKQ 499 (795)
T ss_dssp -------------------------CCSCSCEEEEEECSSSCEEEEES-SCEEEEETT-TTEEEEC-CBCTTCCBCCCCC
T ss_pred -------------------------CcCCCeeEEEEECCCCCEEEEec-CceeEEeCC-CCeEEEc-cccccccccCCce
Confidence 11234688998888887666556 568889987 3333222 1000000112367
Q ss_pred eEEEEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCc
Q 012721 270 ITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMN 349 (457)
Q Consensus 270 i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~ 349 (457)
|.++...++| .+.+.. . +-|..||..+++. . ...... . -......|.++..+++|.+.++.. +.
T Consensus 500 i~~i~~d~~g-~lWigt-~-~Gl~~~~~~~~~~--~-~~~~~~---~------~~l~~~~i~~i~~d~~g~lWigT~-~G 563 (795)
T 4a2l_A 500 ITTLFRDSHK-RLWIGG-E-EGLSVFKQEGLDI--Q-KASILP---V------SNVTKLFTNCIYEASNGIIWVGTR-EG 563 (795)
T ss_dssp EEEEEECTTC-CEEEEE-S-SCEEEEEEETTEE--E-ECCCSC---S------CGGGGSCEEEEEECTTSCEEEEES-SC
T ss_pred EEEEEECCCC-CEEEEe-C-CceEEEeCCCCeE--E-EecCCC---C------CCCCCCeeEEEEECCCCCEEEEeC-CC
Confidence 8999999888 655544 4 4588888876542 0 000000 0 011235789999999998766554 36
Q ss_pred EEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCc
Q 012721 350 LKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNE 429 (457)
Q Consensus 350 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 429 (457)
+..||... .....+....+.. .+. +.++...++|.+.+++ . +-|..|+..++ ....+....+.
T Consensus 564 l~~~d~~~--~~~~~~~~~~gl~--------~~~---i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~--~~~~~~~~dGl 626 (795)
T 4a2l_A 564 FYCFNEKD--KQIKRYNTTNGLP--------NNV---VYGILEDSFGRLWLST-N-RGISCFNPETE--KFRNFTESDGL 626 (795)
T ss_dssp EEEEETTT--TEEEEECGGGTCS--------CSC---EEEEEECTTSCEEEEE-T-TEEEEEETTTT--EEEEECGGGTC
T ss_pred ceeECCCC--CcEEEeCCCCCCc--------hhh---eEEEEECCCCCEEEEc-C-CceEEEcCCCC--cEEEcCCcCCC
Confidence 78888753 3333443222211 111 2577788888876655 3 45778888766 23333322221
Q ss_pred ----c--eeeeeccCCcceeccc
Q 012721 430 ----N--RKPILQAAPRARRSSL 446 (457)
Q Consensus 430 ----v--~~~~~~p~~~~~~~~~ 446 (457)
+ .++...+++....++.
T Consensus 627 ~~~~f~~~~~~~~~~G~l~~g~~ 649 (795)
T 4a2l_A 627 QSNQFNTASYCRTSVGQMYFGGI 649 (795)
T ss_dssp SCSCEEEEEEEECTTSCEEEEET
T ss_pred ccccCccCceeECCCCeEEEecC
Confidence 1 3445556665555543
No 259
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.25 E-value=0.0013 Score=61.37 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=49.6
Q ss_pred CeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEEE
Q 012721 220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lwd 296 (457)
....++++| ++.++++- .++.|..++.. .+....... .. .......++|+|++ + ++++-...+.|..++
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~-~~~~~~~~~-----~~-~~~~P~gia~~pdG-~~lyv~d~~~~~I~~~~ 298 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFT-TQETTPLFT-----IQ-DSGWEFHIQFHPSG-NYAYIVVVNQHYILRSD 298 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETT-TTEEEEEEE-----CS-SSSCCEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECC-CCcEEEEEE-----cC-CCCcceeEEEcCCC-CEEEEEECCCCEEEEEe
Confidence 345788999 67766666 88999999987 343322221 11 12456789999999 7 556656788999988
Q ss_pred ccC
Q 012721 297 MRQ 299 (457)
Q Consensus 297 ~~~ 299 (457)
...
T Consensus 299 ~d~ 301 (430)
T 3tc9_A 299 YDW 301 (430)
T ss_dssp EET
T ss_pred CCc
Confidence 764
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.25 E-value=0.00012 Score=62.29 Aligned_cols=178 Identities=12% Similarity=-0.038 Sum_probs=109.4
Q ss_pred CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
.....+.|+ ++.++.+. .++.|+++|++ .++....+ +.+ ......+++ ++..+.+..-.++.+.+||.
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~-Tgkv~~~~-l~~------~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLE-SAQPVWME-RLG------NIFAEGLAS--DGERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSS-CSSCSEEE-ECT------TCCEEEEEE--CSSCEEEEESSSCEEEEEET
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECC-CCcEEeEE-CCC------CcceeEEEE--eCCEEEEEEccCCEEEEEEC
Confidence 345788887 34455555 88889999999 55555543 221 111123444 44356666668999999999
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-cCcEEEEeccCCCCceeEeeeccccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 376 (457)
.+.+.. ..+.. ...-+.++ ++++.|+.++ .+.|.++|..+ .+.+..+........
T Consensus 124 ~Tl~~~----~ti~~--------------~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T-~~v~~~I~V~~~g~~--- 179 (268)
T 3nok_A 124 MPPQRE----RTTRY--------------SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDG-FALVGAVQVKLRGQP--- 179 (268)
T ss_dssp TTTEEE----EEEEC--------------SSCCCCEE--EETTEEEEECSSSEEEEECTTT-CCEEEEEECEETTEE---
T ss_pred CcCcEE----EEEeC--------------CCceeEEe--cCCCEEEEECCCCEEEEEcCCC-CeEEEEEEeCCCCcc---
Confidence 998655 23322 01113333 5677777665 49999999986 677777665432211
Q ss_pred cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-------------CCcceeeeeccCCc
Q 012721 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-------------KNENRKPILQAAPR 440 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~ 440 (457)
+..+..+.|. +|...+..-.+..|.+.|.+++ +....+... .+..+.+++.|++.
T Consensus 180 -------v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG-~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~ 247 (268)
T 3nok_A 180 -------VELINELECA-NGVIYANIWHSSDVLEIDPATG-TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG 247 (268)
T ss_dssp -------CCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC-BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC
T ss_pred -------cccccccEEe-CCEEEEEECCCCeEEEEeCCCC-cEEEEEECCCCcccccccccCcCCceEEEEEcCCCC
Confidence 0001346666 7765555546789999999999 554544422 13458899998754
No 261
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.24 E-value=0.00044 Score=58.73 Aligned_cols=197 Identities=11% Similarity=0.028 Sum_probs=113.9
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEeecCCCceeeeeeccccccccccCCCCCceeccCCccccc
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEMDHFPFVSSENTLLAEKNFMNEHNPPSFAHGYHLEWTEN 193 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (457)
.-...+.| + ++.++.+.+.+|.|+++|+.+++..... .....
T Consensus 55 ~ftqGL~~--~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~---------------------------------- 96 (268)
T 3nok_A 55 AFTQGLVF--H-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNI---------------------------------- 96 (268)
T ss_dssp CCEEEEEE--E-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTC----------------------------------
T ss_pred cccceEEE--E-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCc----------------------------------
Confidence 34578888 3 4667778888899999999999876554 22100
Q ss_pred cceEEEeccCccccccceeeccCCCCCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEE
Q 012721 194 MATKIANVGNSVHARCQKVYPHAHDFNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITS 272 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (457)
.-..+++.. +++++.. .++.+.+||.+ ..+.+..+... +. + ..
T Consensus 97 --------------------------FgeGit~~g-~~Ly~ltw~~~~v~V~D~~-Tl~~~~ti~~~-----~e-G--wG 140 (268)
T 3nok_A 97 --------------------------FAEGLASDG-ERLYQLTWTEGLLFTWSGM-PPQRERTTRYS-----GE-G--WG 140 (268)
T ss_dssp --------------------------CEEEEEECS-SCEEEEESSSCEEEEEETT-TTEEEEEEECS-----SC-C--CC
T ss_pred --------------------------ceeEEEEeC-CEEEEEEccCCEEEEEECC-cCcEEEEEeCC-----Cc-e--eE
Confidence 112244442 3444445 89999999998 56666665322 11 1 23
Q ss_pred EEEecCCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEE
Q 012721 273 AEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLK 351 (457)
Q Consensus 273 v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~ 351 (457)
++ +++ ..|+.+..++.|.++|..+.+.. ..+.. ...+. .-..++.+.|. +|+..+..-. +.|.
T Consensus 141 Lt--~Dg-~~L~vSdGs~~l~~iDp~T~~v~----~~I~V-~~~g~-------~v~~lNeLe~~-dG~lyanvw~s~~I~ 204 (268)
T 3nok_A 141 LC--YWN-GKLVRSDGGTMLTFHEPDGFALV----GAVQV-KLRGQ-------PVELINELECA-NGVIYANIWHSSDVL 204 (268)
T ss_dssp EE--EET-TEEEEECSSSEEEEECTTTCCEE----EEEEC-EETTE-------ECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred Ee--cCC-CEEEEECCCCEEEEEcCCCCeEE----EEEEe-CCCCc-------ccccccccEEe-CCEEEEEECCCCeEE
Confidence 33 566 66666667999999999987654 22221 00000 01245667776 6754444333 8999
Q ss_pred EEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCc-EEEEEe
Q 012721 352 LWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGL-HFATGS 403 (457)
Q Consensus 352 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~s~~ 403 (457)
+.|..+ ++.+..+....-.............+. ..++++|+++ +++||-
T Consensus 205 vIDp~T-G~V~~~Idl~~L~~~~~~~~~~~~~vl--NGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 205 EIDPAT-GTVVGVIDASALTRAVAGQVTNPEAVL--NGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EECTTT-CBEEEEEECHHHHHHHTTTCCCTTCCE--EEEEECTTTCCEEEEET
T ss_pred EEeCCC-CcEEEEEECCCCcccccccccCcCCce--EEEEEcCCCCEEEEeCC
Confidence 999986 788777764321000000000001111 5899999755 445554
No 262
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.23 E-value=0.00041 Score=58.35 Aligned_cols=180 Identities=11% Similarity=0.008 Sum_probs=108.3
Q ss_pred CCCeeEEEeCCCCCEEEEe-C--CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721 218 DFNINSISNNSDCETFVSA-D--DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l 294 (457)
......+.|++ +.++.+. . +..|+.+|+. .++....+.+. .+ ..--.+++. +..+....-.++.+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~-tgkv~~~~~l~-----~~-~fgeGi~~~--~~~ly~ltw~~~~v~v 89 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLE-TGRILQRAEVP-----PP-YFGAGIVAW--RDRLIQLTWRNHEGFV 89 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETT-TCCEEEEEECC-----TT-CCEEEEEEE--TTEEEEEESSSSEEEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECC-CCCEEEEEeCC-----CC-cceeEEEEe--CCEEEEEEeeCCEEEE
Confidence 34567899986 4444444 4 3599999999 66666654332 11 111233443 3256666678999999
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEeeecccccc
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~ 373 (457)
||..+.+.. ..+.. ...=+.++ ++++.|+.++. +.|.++|..+ .+.+..+........
T Consensus 90 ~D~~tl~~~----~ti~~--------------~~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t-~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 90 YDLATLTPR----ARFRY--------------PGEGWALT--SDDSHLYMSDGTAVIRKLDPDT-LQQVGSIKVTAGGRP 148 (243)
T ss_dssp EETTTTEEE----EEEEC--------------SSCCCEEE--ECSSCEEEECSSSEEEEECTTT-CCEEEEEECEETTEE
T ss_pred EECCcCcEE----EEEeC--------------CCCceEEe--eCCCEEEEECCCCeEEEEeCCC-CeEEEEEEEccCCcc
Confidence 999987655 33322 01113443 56776666544 8999999986 677777665432110
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-------------CCcceeeeeccCCc
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-------------KNENRKPILQAAPR 440 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-------------~~~v~~~~~~p~~~ 440 (457)
+..+..+.|. +|+..+..-.+..|.+.|.+++ +....+... ....+.+++.|+..
T Consensus 149 ----------~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG-~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 149 ----------LDNLNELEWV-NGELLANVWLTSRIARIDPASG-KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp ----------CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTC-BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred ----------cccceeeEEe-CCEEEEEECCCCeEEEEECCCC-CEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 0001245555 6665555546789999999999 554544422 13457888888653
No 263
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.17 E-value=0.0034 Score=55.90 Aligned_cols=164 Identities=10% Similarity=-0.037 Sum_probs=95.5
Q ss_pred CeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEE
Q 012721 220 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd 296 (457)
....+++.+.+..| ++- .++.|.+++++ ......++ .........++++|.+..++++.... +.|..++
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~-g~~~~~~~-------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~ 149 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEEE-------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCC-CCceEEEE-------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEc
Confidence 34678887655444 454 78899999987 33322221 12234578999999662455544333 7888888
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+..... +.+.. ..-.....+++++++..|..++. +.|..+|++ +.....+........
T Consensus 150 ~dG~~~-----~~~~~------------~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d--g~~~~~~~~~~~~~~- 209 (316)
T 1ijq_A 150 LNGVDI-----YSLVT------------ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 209 (316)
T ss_dssp TTSCCE-----EEEEC------------SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTS-
T ss_pred CCCCCe-----EEEEE------------CCCCCceEEEEeccCCEEEEEECCCCeEEEEecC--CCceEEEeecCCccC-
Confidence 764321 11100 00135678999998877776653 789999986 333333322110000
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
.. ..+++. .+..+++-...+.|..++..+++. ...+.
T Consensus 210 --------~P---~giav~-~~~ly~~d~~~~~V~~~~~~~g~~-~~~i~ 246 (316)
T 1ijq_A 210 --------HP---FSLAVF-EDKVFWTDIINEAIFSANRLTGSD-VNLLA 246 (316)
T ss_dssp --------SE---EEEEEE-TTEEEEEETTTTEEEEEETTTCCC-CEEEE
T ss_pred --------Cc---EEEEEE-CCEEEEEECCCCeEEEEeCCCCcc-eEEEe
Confidence 00 366774 355555566678899999877743 33343
No 264
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.16 E-value=0.00037 Score=69.24 Aligned_cols=33 Identities=12% Similarity=0.211 Sum_probs=23.8
Q ss_pred EEEEEEecCCCCEEEEee-CCCeEEEEEecccceeE
Q 012721 117 NRVRWCAAPNGSMFILST-NDKTIKLWKVRDQKVKK 151 (457)
Q Consensus 117 ~~v~~~~s~~~~~l~s~s-~d~~i~vw~~~~~~~~~ 151 (457)
.++++ ..++.+++.|+ .+..+.+||..+++...
T Consensus 246 ~~~~~--~~~g~lyv~GG~~~~~v~~yd~~t~~W~~ 279 (656)
T 1k3i_A 246 PGISM--DGNGQIVVTGGNDAKKTSLYDSSSDSWIP 279 (656)
T ss_dssp CEEEE--CTTSCEEEECSSSTTCEEEEEGGGTEEEE
T ss_pred ccccC--CCCCCEEEeCCCCCCceEEecCcCCceeE
Confidence 34555 47888888887 45679999988776543
No 265
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.16 E-value=0.0022 Score=62.40 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=48.8
Q ss_pred CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCC
Q 012721 348 MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK 427 (457)
Q Consensus 348 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 427 (457)
|.|..||+.+ ++.+-+....... ..-.....+.+++.|+.|+.++.||.++| +.+-.++...
T Consensus 466 G~l~A~D~~t-G~~~W~~~~~~~~----------------~~g~~~tagglvf~g~~dg~l~A~D~~tG-~~lW~~~~~~ 527 (582)
T 1flg_A 466 GSLRAMDPVS-GKVVWEHKEHLPL----------------WAGVLATAGNLVFTGTGDGYFKAFDAKSG-KELWKFQTGS 527 (582)
T ss_dssp EEEEEECTTT-CCEEEEEEESSCC----------------CSCCEEETTTEEEEECTTSEEEEEETTTC-CEEEEEECSS
T ss_pred ceEEEEECCC-CCEEEEecCCCCC----------------cccceEeCCCEEEEECCCCcEEEEECCCC-CEEEEecCCC
Confidence 7788899876 6666555433221 11122224667888999999999999999 5555555433
Q ss_pred Cc-ceeeeeccCCcceec
Q 012721 428 NE-NRKPILQAAPRARRS 444 (457)
Q Consensus 428 ~~-v~~~~~~p~~~~~~~ 444 (457)
.. ...+.+..++.....
T Consensus 528 g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 528 GIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp CCCSCCEEEEETTEEEEE
T ss_pred CcccCceEEEECCEEEEE
Confidence 22 233566667654443
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.10 E-value=0.005 Score=57.45 Aligned_cols=182 Identities=8% Similarity=0.025 Sum_probs=92.6
Q ss_pred CeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEecCCcc-EEEEEccCCeEEEE
Q 012721 220 NINSISNNS-DCETFVSA-DDLRINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHPIYCN-LLAYSSSRGFVRLV 295 (457)
Q Consensus 220 ~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p~~~~-~l~~~~~dg~i~lw 295 (457)
....++++| ++.++++- .++.|+.+|.. .+.. ..++... .......++|+|++ + ++++-...+.|+.+
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~-~g~~~~~~~~~~------~~~~~~~ia~dpdG-~~LYvad~~~~~I~~~ 300 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPA-TGTLTEEEVMMD------TKGSNFHIVWHPTG-DWAYIIYNGKHCIYRV 300 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTT-TCCEEEEEEECS------CCSSCEEEEECTTS-SEEEEEETTTTEEEEE
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECC-CCeEEEEEeccC------CCCCcccEEEeCCC-CEEEEEeCCCCEEEEE
Confidence 345688898 67666666 78899999987 3433 2222111 11223579999999 6 55555667899998
Q ss_pred EccC--CeeeccccccccccccccCccc--ceeccccceEEEEE---------ccCCCeEEEEec-CcEEEEeccCCCCc
Q 012721 296 DMRQ--SALCDHSARILRDAAESHGSKS--FFTEIIASISDIKF---------ANDGQHLLSRDY-MNLKLWDIRMDSTP 361 (457)
Q Consensus 296 d~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~---------s~~g~~l~s~~~-~~i~~wd~~~~~~~ 361 (457)
+... +... ....+........... .....-..-..+++ .++|.+.++-.. +.|+.++.. +.
T Consensus 301 ~~d~~~~~~~--~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~--G~- 375 (433)
T 4hw6_A 301 DYNRETGKLA--VPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE--GR- 375 (433)
T ss_dssp EBCTTTCCBC--CCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT--SE-
T ss_pred eCCCCCcccC--cEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC--CC-
Confidence 8653 2110 0011111000000000 00001123567888 666766665444 888888752 43
Q ss_pred eeEeeeccc--cccccccccCCC-CccccceEEEc-CCCcEEEEEeCCCcEEEEecC
Q 012721 362 VATFKIHEH--LRPKLCDLYNND-SIFDKFECSVS-GDGLHFATGSYSNLLRIFSHG 414 (457)
Q Consensus 362 ~~~~~~~~~--~~~~~~~~~~~~-~~~~v~~~~~s-~d~~~l~s~~~dg~i~iw~~~ 414 (457)
+..+.+... ............ ....-..++++ +++.++++-...++|+.++++
T Consensus 376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 333333211 000000000000 01112578888 566666666667788877764
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.05 E-value=0.0076 Score=55.61 Aligned_cols=178 Identities=8% Similarity=-0.033 Sum_probs=100.9
Q ss_pred CeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-CCeEEEEE
Q 012721 220 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~lwd 296 (457)
....+++.+.+..| ++- ..+.|.+.+++ ......++ .........|+++|.+..++.+-.. .+.|...+
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~-g~~~~~l~-------~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~ 231 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 231 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTT-TCSEEEEE-------ECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEE
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCC-CCceEEEE-------eCCCCCcceEEEecccCeEEEEeCCCCCEEEEEe
Confidence 56678888744444 444 78899999988 33332221 2233457899999976244444322 47788888
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+...... .+... .-.....|++++++..|..++. +.|..+|++ +.....+........
T Consensus 232 ~dG~~~~----~~~~~-------------~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~l~- 291 (400)
T 3p5b_L 232 LNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 291 (400)
T ss_dssp TTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCCCEEEEECSSTTS-
T ss_pred CCCCccE----EEEEC-------------CCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC--CCccEEEEeCCCCCC-
Confidence 7653211 11111 0135688999998888877653 789989886 333333322111000
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCC-cceeeeeccC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKN-ENRKPILQAA 438 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~v~~~~~~p~ 438 (457)
.. ..+++. .+.++.+-...+.|..++..+|+. ..++..... |.--..++|.
T Consensus 292 --------~P---~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~-~~~i~~~~~~p~~i~v~~~~ 343 (400)
T 3p5b_L 292 --------HP---FSLAVF-EDKVFWTDIINEAIFSANRLTGSD-VNLLAENLLSPEDMVLFHNL 343 (400)
T ss_dssp --------SE---EEEEEE-TTEEEEEESSSCSEEEEESSSCCC-CEEEECSCSCEEEEEEESGG
T ss_pred --------CC---EEEEEe-CCEEEEecCCCCeEEEEEcCCCCc-eEEEecCCCCCceEEEEeec
Confidence 00 356663 344555556678899999888844 344443333 3333345544
No 268
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.04 E-value=0.0015 Score=63.55 Aligned_cols=46 Identities=9% Similarity=-0.055 Sum_probs=30.0
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCceeeEEecCC-CcceeeeeccCCcc
Q 012721 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVEAGK-NENRKPILQAAPRA 441 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~ 441 (457)
.+..++.++.|+.|+.||.++| +.+-.++... .....+.+..++..
T Consensus 483 agg~vf~gt~dg~l~A~D~~tG-~~lW~~~l~~g~~~~P~~y~~~G~q 529 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDTG-DLLWKFKIPSGAIGYPMTYTHKGTQ 529 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTTC-CEEEEEECSSCCCSCCEEEEETTEE
T ss_pred cCCEEEEECCCCeEEEEECCCC-CEEEEeeCCCCcEeccEEEEeCCEE
Confidence 5667778999999999999999 4444444322 22233455555544
No 269
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.03 E-value=0.015 Score=58.39 Aligned_cols=179 Identities=9% Similarity=-0.007 Sum_probs=102.6
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEE
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd 296 (457)
....|++.+.+..|+.+ ..+.|.+.+++ ......+ +.........|+++|.+..++++-... +.|...+
T Consensus 472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld-G~~~~~l-------~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~ 543 (791)
T 3m0c_C 472 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTL-------FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 543 (791)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SSSEEEE-------EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcceeeeeecCCcEEEEecCCCeEEEEeCC-CCeEEEE-------EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEe
Confidence 45678888777655554 78899999998 3332222 122334578999999762444443333 7888888
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeec-ccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIH-EHLRP 373 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~-~~~~~ 373 (457)
+...... .+... .-.....|++++.+..|+.++. +.|...++. +.....+... .....
T Consensus 544 ~dG~~~~----~lv~~-------------~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d--G~~~~~v~~~~~~l~~ 604 (791)
T 3m0c_C 544 LNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLAH 604 (791)
T ss_dssp TTSCCEE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEEECTTTTSS
T ss_pred cCCCceE----EEEeC-------------CCCCceEEEEecCCCeEEEEeCCCCcEEEEecC--CCceEEEecCCCccCC
Confidence 8754321 11111 1135788999988777776653 788888885 4443333221 11100
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCC
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAP 439 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~ 439 (457)
.+.+++..+ .++++-...+.|...+..+|+....+......|..-..+||..
T Consensus 605 -------------P~glav~~~-~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~ 656 (791)
T 3m0c_C 605 -------------PFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT 656 (791)
T ss_dssp -------------EEEEEEETT-EEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred -------------CCEEEEeCC-EEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence 035665332 3344444567888888888844433333333444444566543
No 270
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.00 E-value=0.0073 Score=53.76 Aligned_cols=175 Identities=10% Similarity=0.067 Sum_probs=99.0
Q ss_pred CeeEEEeCCCCCEE-EEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc--cCCeEEEE
Q 012721 220 NINSISNNSDCETF-VSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS--SRGFVRLV 295 (457)
Q Consensus 220 ~v~~~~~~~~~~~l-~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~--~dg~i~lw 295 (457)
....+++.+.+..| ++- ..+.|.+++++ .... ..+ ..........++++|.+ ..|+... ..+.|...
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~d-G~~~-~~l------~~~~~~~P~giavdp~~-g~ly~td~~~~~~I~r~ 150 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLR-KVL------FWQELDQPRAIALDPSS-GFMYWTDWGEVPKIERA 150 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCSC-EEE------ECSSCSSEEEEEEEGGG-TEEEEEECSSSCEEEEE
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECC-CCcE-EEE------EeCCCCCccEEEEeCCC-CEEEEEecCCCCEEEEE
Confidence 34578887655444 444 77899999987 3322 221 12233557899999976 4444443 35788888
Q ss_pred EccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCceeEeeecccccc
Q 012721 296 DMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPVATFKIHEHLRP 373 (457)
Q Consensus 296 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~~~~~~~~~~~~ 373 (457)
++...... .+... .-..-..++++|++..|..++ . +.|..+|++ +.....+.......+
T Consensus 151 ~~dG~~~~----~~~~~-------------~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~P 211 (318)
T 3sov_A 151 GMDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPHP 211 (318)
T ss_dssp ETTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEETT--SCSCEEEECSCCSCE
T ss_pred EcCCCCeE----EEEEC-------------CCCCccEEEEeccCCEEEEEECCCCEEEEEcCC--CCceEEEecCCCCCc
Confidence 87643211 11111 013457899999877777665 3 889999986 333333321111100
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC-CCcceeeeeccC
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG-KNENRKPILQAA 438 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~ 438 (457)
..+++.. +.++.+-...+.|..++..+|+.. ..+... ..|.--..++|.
T Consensus 212 --------------~glav~~-~~lywtd~~~~~V~~~~~~~G~~~-~~i~~~~~~P~~i~v~~~~ 261 (318)
T 3sov_A 212 --------------FALTLFE-DILYWTDWSTHSILACNKYTGEGL-REIHSDIFSPMDIHAFSQQ 261 (318)
T ss_dssp --------------EEEEEET-TEEEEEETTTTEEEEEETTTCCSC-EEEECCCSSCCCEEEECGG
T ss_pred --------------eEEEEeC-CEEEEEecCCCeEEEEECCCCCce-EEEeCCCCCCcEEEEeccc
Confidence 3566653 344455556788999999888443 333332 333333344554
No 271
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=97.89 E-value=0.0069 Score=55.65 Aligned_cols=156 Identities=10% Similarity=-0.025 Sum_probs=94.2
Q ss_pred CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 220 NINSISNNSDCETFVS-A-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
....++|++.+..|+. - ..+.|+.++++ ......++ .........+++.+.+..++++-...+.|.+.++
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~ 188 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 188 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCCEEEEE-------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBT
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecC-CCCcEEEE-------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeC
Confidence 4778999976555554 4 78899999988 33332221 1122344678888765366666667788888887
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c-CcEEEEeccCCCCceeEeeeccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
...... .+... .......++++|.+.+|...+ . +.|..++++ +.....+.......+
T Consensus 189 dg~~~~----~l~~~-------------~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~P- 248 (386)
T 3v65_B 189 DGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFWP- 248 (386)
T ss_dssp TSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSCE-
T ss_pred CCCceE----EeecC-------------CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCCe-
Confidence 653211 11111 113468899999877776554 3 567777765 443333322111100
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~ 416 (457)
..++|+|++..|+.+. ..+.|..+++...
T Consensus 249 -------------nGlavd~~~~~lY~aD~~~~~I~~~d~dG~ 278 (386)
T 3v65_B 249 -------------NGLTIDYAGRRMYWVDAKHHVIERANLDGS 278 (386)
T ss_dssp -------------EEEEEEGGGTEEEEEETTTTEEEEECTTSC
T ss_pred -------------eeEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 4799998766665554 4677999988644
No 272
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.03 Score=56.82 Aligned_cols=190 Identities=9% Similarity=0.002 Sum_probs=108.4
Q ss_pred CCCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 218 DFNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
...|.++...+++.+.+...++.|..+|.. .++... +... ......|.++...+++ .+.+ |+. +-|..||.
T Consensus 406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~~~~-~~~~----~~~~~~v~~i~~d~~g-~lwi-gt~-~Gl~~~~~ 476 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTR-LKKFQI-IELE----KNELLDVRVFYEDKNK-KIWI-GTH-AGVFVIDL 476 (781)
T ss_dssp CSBEEEEEECTTSCEEEEETTEEEEEECSS-SCEEEE-CCST----TTCCCCEEEEEECTTS-EEEE-EET-TEEEEEES
T ss_pred CcceEEEEECCCCCEEEEeccCCEEEEcCC-CCcEEE-eccC----CCCCCeEEEEEECCCC-CEEE-EEC-CceEEEeC
Confidence 346889988888876665577788999876 333222 1100 1234678999888887 5444 444 55888998
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCD 377 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 377 (457)
.+++.. ..... ... ......|.++...++|.+.+....+-+..||... .....+......
T Consensus 477 ~~~~~~----~~~~~--~~~------~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~--~~~~~~~~~~~l------ 536 (781)
T 3v9f_A 477 ASKKVI----HHYDT--SNS------QLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDM--QLVRKFNQYEGF------ 536 (781)
T ss_dssp SSSSCC----EEECT--TTS------SCSCSCEEEEEECTTCCEEEEESSSCEEEECTTC--CEEEEECTTTTC------
T ss_pred CCCeEE----ecccC--ccc------ccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCC--CeEEEccCCCCC------
Confidence 775321 11000 000 0012568999999999877765545577788753 333333321111
Q ss_pred ccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC----CCcceeeeeccCCcceec
Q 012721 378 LYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG----KNENRKPILQAAPRARRS 444 (457)
Q Consensus 378 ~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~----~~~v~~~~~~p~~~~~~~ 444 (457)
... .|.++...++|.+.++. .+|.|..||..+++ ...+... ...+.++...+++..-.+
T Consensus 537 --~~~---~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~--~~~~~~~~gl~~~~i~~i~~d~~g~lW~~ 599 (781)
T 3v9f_A 537 --CSN---TINQIYRSSKGQMWLAT-GEGLVCFPSARNFD--YQVFQRKEGLPNTHIRAISEDKNGNIWAS 599 (781)
T ss_dssp --SCS---CEEEEEECTTSCEEEEE-TTEEEEESCTTTCC--CEEECGGGTCSCCCCCEEEECSSSCEEEE
T ss_pred --CCC---eeEEEEECCCCCEEEEE-CCCceEEECCCCCc--EEEccccCCCCCceEEEEEECCCCCEEEE
Confidence 001 12577778888866544 46665888887762 2222211 124556666666655444
No 273
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.03 Score=56.78 Aligned_cols=189 Identities=8% Similarity=0.069 Sum_probs=106.4
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEcc
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMR 298 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~ 298 (457)
..|.++...+++.+.+...++-|..||.. .+. ...+. .+ .......|.++...+++ .+. .|+.++-|..+|..
T Consensus 363 ~~v~~i~~d~~g~lWigt~~~Gl~~~~~~-~~~-~~~~~-~~--~~~~~~~v~~i~~d~~g-~lW-igt~~~Gl~~~~~~ 435 (781)
T 3v9f_A 363 KVVSSVCDDGQGKLWIGTDGGGINVFENG-KRV-AIYNK-EN--RELLSNSVLCSLKDSEG-NLW-FGTYLGNISYYNTR 435 (781)
T ss_dssp SCEEEEEECTTSCEEEEEBSSCEEEEETT-EEE-EECC--------CCCSBEEEEEECTTS-CEE-EEETTEEEEEECSS
T ss_pred cceEEEEEcCCCCEEEEeCCCcEEEEECC-CCe-EEEcc-CC--CCCCCcceEEEEECCCC-CEE-EEeccCCEEEEcCC
Confidence 46889998888876655567778889876 322 22111 00 12234678999888877 544 46666678899987
Q ss_pred CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccccc
Q 012721 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDL 378 (457)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~ 378 (457)
+++.. .+.. . ......|.++...++|.+.+... +.|..+|... ++.. .+....... +
T Consensus 436 ~~~~~-----~~~~-~---------~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~-~~~~-~~~~~~~~~-----~ 492 (781)
T 3v9f_A 436 LKKFQ-----IIEL-E---------KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLAS-KKVI-HHYDTSNSQ-----L 492 (781)
T ss_dssp SCEEE-----ECCS-T---------TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSS-SSCC-EEECTTTSS-----C
T ss_pred CCcEE-----Eecc-C---------CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCC-CeEE-ecccCcccc-----c
Confidence 76432 1110 0 00125688999888887665544 6788898764 3322 222111000 0
Q ss_pred cCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEec-C---CCcceeeeeccCCcceec
Q 012721 379 YNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEA-G---KNENRKPILQAAPRARRS 444 (457)
Q Consensus 379 ~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~-~---~~~v~~~~~~p~~~~~~~ 444 (457)
.. ..+.++...++|.+.+ |+.++-|..|+..++ . ...+.. + ...|.++...+++..-.+
T Consensus 493 -~~---~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~-~-~~~~~~~~~l~~~~i~~i~~d~~g~lWi~ 555 (781)
T 3v9f_A 493 -LE---NFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ-L-VRKFNQYEGFCSNTINQIYRSSKGQMWLA 555 (781)
T ss_dssp -SC---SCEEEEEECTTCCEEE-EESSSCEEEECTTCC-E-EEEECTTTTCSCSCEEEEEECTTSCEEEE
T ss_pred -cc---ceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC-e-EEEccCCCCCCCCeeEEEEECCCCCEEEE
Confidence 00 1125788888888665 444344778887765 2 222221 1 234566666666654433
No 274
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.86 E-value=0.00078 Score=67.95 Aligned_cols=114 Identities=12% Similarity=0.061 Sum_probs=70.6
Q ss_pred CeeEEEeC-CCCCEEEEe--CC----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC---
Q 012721 220 NINSISNN-SDCETFVSA--DD----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--- 289 (457)
Q Consensus 220 ~v~~~~~~-~~~~~l~~~--~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--- 289 (457)
.+...+|+ |||++|+.+ .+ ..|+++|+.+..+.+. ..+. .....++|+||| +.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~------~~~~---~~~~~~~WspDg-~~l~y~~~d~~~ 244 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA------DKVS---GTNGEIVWGPDH-TSLFYVTKDETL 244 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC------CCEE---EECSCCEECSST-TEEEEEEECTTC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC------cccc---CceeeEEEecCC-CEEEEEEECCCC
Confidence 57789999 999998865 23 2599999984303211 0011 123467899999 777666654
Q ss_pred --CeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---c-CcEEEEeccC
Q 012721 290 --GFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---Y-MNLKLWDIRM 357 (457)
Q Consensus 290 --g~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~-~~i~~wd~~~ 357 (457)
..|.++++.++.... ..++.. ........+.|+|||++|+... . ..|+++|+..
T Consensus 245 ~~~~v~~~~lgt~~~~~--~lv~~~------------~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~ 304 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSED--VCLYEE------------HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRK 304 (751)
T ss_dssp CEEEEEEEETTSCGGGC--EEEEEC------------CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSS
T ss_pred CCCEEEEEECCCCchhc--EEEEec------------CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence 257778876643110 112211 0113456789999999988543 2 5688888864
No 275
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.85 E-value=0.044 Score=57.66 Aligned_cols=133 Identities=9% Similarity=0.044 Sum_probs=72.6
Q ss_pred CceEEEEE---ecCCccEEEEEc----------cCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEE
Q 012721 268 EVITSAEF---HPIYCNLLAYSS----------SRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIK 334 (457)
Q Consensus 268 ~~i~~v~~---~p~~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 334 (457)
+.+.+++. ..+...+|++|. ..|.|.+|++..+++. .+.. ....+.+++++
T Consensus 829 E~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~-----lv~~-----------~~v~g~v~al~ 892 (1158)
T 3ei3_A 829 EYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQ-----TVAE-----------KEVKGAVYSMV 892 (1158)
T ss_dssp EEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEE-----EEEE-----------EEESSCEEEEE
T ss_pred cceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEE-----EEEE-----------EEcCCcCEEEe
Confidence 44555553 333236888875 3588999998754322 2111 12246788876
Q ss_pred EccCCCeEEEEecCcEEEEeccCCCCcee-EeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 335 FANDGQHLLSRDYMNLKLWDIRMDSTPVA-TFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 335 ~s~~g~~l~s~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
-- +| +|++|-..+|++|++.. .+.+. ....... + ..+.....+++|+.|+.-..|.+...
T Consensus 893 ~~-~g-~Lla~ig~~l~vy~l~~-~~~L~~~~~~~~~-i---------------~~~~l~~~~~~I~vgD~~~Sv~~~~y 953 (1158)
T 3ei3_A 893 EF-NG-KLLASINSTVRLYEWTT-EKELRTECNHYNN-I---------------MALYLKTKGDFILVGDLMRSVLLLAY 953 (1158)
T ss_dssp EE-TT-EEEEEETTEEEEEEECT-TSCEEEEEEECCC-S---------------CEEEEEEETTEEEEEESSBCEEEEEE
T ss_pred ee-CC-EEEEEcCCEEEEEECCC-CceEEEEeecccc-E---------------EEEEEeccCCEEEEEEhhheEEEEEE
Confidence 44 35 66666668999999974 44443 1111111 1 22233335678888888777877665
Q ss_pred CCCCceeeEEecCCC--cceeeee
Q 012721 414 GVGSAGGITVEAGKN--ENRKPIL 435 (457)
Q Consensus 414 ~~~~~~~~~~~~~~~--~v~~~~~ 435 (457)
+.....+..+..+.. .++++.+
T Consensus 954 ~~~~~~L~~~a~D~~~~~vta~~~ 977 (1158)
T 3ei3_A 954 KPMEGNFEEIARDFNPNWMSAVEI 977 (1158)
T ss_dssp ETTTTEEEEEEECCSCBCEEEEEE
T ss_pred EcCCCeEEEEEeecccccEEEEEE
Confidence 544334444443333 3444444
No 276
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=97.83 E-value=0.016 Score=52.26 Aligned_cols=156 Identities=9% Similarity=-0.039 Sum_probs=95.3
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
....++|++....|+.+ ..+.|..++++ ......++ .........+++.+.+..++++-...+.|.+.++
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~-g~~~~~~~-------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 145 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLN-GSNVEEVV-------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANL 145 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecC-CCCceEEE-------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcC
Confidence 46789998765555544 78899999988 33322221 1122345688998755366677677889999998
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c-CcEEEEeccCCCCceeEeeeccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
...... .+... .......++++|.+.+|...+ . +.|..++++ +.....+.......
T Consensus 146 dG~~~~----~l~~~-------------~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~~~~-- 204 (349)
T 3v64_C 146 DGAHRK----VLLWQ-------------SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD--GSGRRIIADTHLFW-- 204 (349)
T ss_dssp TSCSCE----EEECT-------------TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCSCEESCCSSCSC--
T ss_pred CCCceE----EEEeC-------------CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCC--CCCcEEEEECCCCC--
Confidence 754211 11111 113468899999776666544 3 667777765 43333332111110
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~ 416 (457)
-..++++|++..|+.+. ..+.|..+++...
T Consensus 205 ------------PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 205 ------------PNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp ------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred ------------cceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 05799998776666554 4678999998644
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.77 E-value=0.012 Score=54.82 Aligned_cols=172 Identities=9% Similarity=-0.016 Sum_probs=89.8
Q ss_pred CCeeEEEeCCCCCEEEEeCCC-----eEEEEEcCCCcce-eeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccCCe
Q 012721 219 FNINSISNNSDCETFVSADDL-----RINLWNLEISDQC-FNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSRGF 291 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~-----~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~dg~ 291 (457)
.....++++++++++++...+ .+...+.. .... ... +. .......++++| ++ .++++-..++.
T Consensus 182 ~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~-~~~~~~~~-------~~-~~~~P~giavd~~~G-~lyv~d~~~~~ 251 (433)
T 4hw6_A 182 GQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA-SGFTERLS-------LC-NARGAKTCAVHPQNG-KIYYTRYHHAM 251 (433)
T ss_dssp SCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-GTTCCEEE-------EE-ECSSBCCCEECTTTC-CEEECBTTCSE
T ss_pred CCccEEEECCCCCEEEEcCCCCcccceEEEEECC-CCeecccc-------cc-ccCCCCEEEEeCCCC-eEEEEECCCCE
Confidence 357799999999955554321 23333332 1111 011 11 123346688999 66 76666667889
Q ss_pred EEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCC-CCc--eeEee
Q 012721 292 VRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMD-STP--VATFK 366 (457)
Q Consensus 292 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~-~~~--~~~~~ 366 (457)
|+.+|..++.... .++.. .. ...-..++|+|+|++|..++ . +.|+.++.... +.. ...+.
T Consensus 252 V~~~d~~~g~~~~---~~~~~---~~---------~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~a 316 (433)
T 4hw6_A 252 ISSYDPATGTLTE---EEVMM---DT---------KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVC 316 (433)
T ss_dssp EEEECTTTCCEEE---EEEEC---SC---------CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEE
T ss_pred EEEEECCCCeEEE---EEecc---CC---------CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEE
Confidence 9999987654311 11111 00 11234699999999776654 3 88998887531 211 12222
Q ss_pred eccccccccccccCCCCccccceEEE---------cCCCcEEEEEeCCCcEEEEecCCC
Q 012721 367 IHEHLRPKLCDLYNNDSIFDKFECSV---------SGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~v~~~~~---------s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+...................-..+++ .+++.+.++-...++|+.++. +|
T Consensus 317 g~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 317 GQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp ECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred ecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 22000000000000000001146888 677777777667788999884 45
No 278
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.73 E-value=0.0088 Score=59.32 Aligned_cols=84 Identities=18% Similarity=0.182 Sum_probs=47.8
Q ss_pred EEEEecCCccEEEEEccCC-------------------eEEEEEccCCeeeccccccccccccccCcccceeccccceEE
Q 012721 272 SAEFHPIYCNLLAYSSSRG-------------------FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISD 332 (457)
Q Consensus 272 ~v~~~p~~~~~l~~~~~dg-------------------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 332 (457)
.+++.|+. .+++.+..++ .|..+|.++++..-. ++. .+...-.+. ...+...
T Consensus 234 ~~a~d~~~-~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~----~~~---~~~~~wd~~-~~~~~~~ 304 (668)
T 1kv9_A 234 SMAYDPEL-DLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWH----YQV---TPGDSWDFT-ATQQITL 304 (668)
T ss_dssp CEEEETTT-TEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEE----EES---STTCCSCCC-CCSCEEE
T ss_pred ceEEcCCC-CEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeE----eec---CCCcccccc-CCCCcEE
Confidence 46888887 7888887766 389999999874411 111 000000000 0122222
Q ss_pred EEEccCCC---eEEEEec-CcEEEEeccCCCCceeEe
Q 012721 333 IKFANDGQ---HLLSRDY-MNLKLWDIRMDSTPVATF 365 (457)
Q Consensus 333 ~~~s~~g~---~l~s~~~-~~i~~wd~~~~~~~~~~~ 365 (457)
..+..+|+ .++.++. |.++++|..+ ++++...
T Consensus 305 ~d~~~~G~~~~~v~~~~~~G~l~~lD~~t-G~~l~~~ 340 (668)
T 1kv9_A 305 AELNIDGKPRKVLMQAPKNGFFYVLDRTN-GKLISAE 340 (668)
T ss_dssp EEEEETTEEEEEEEECCTTSEEEEEETTT-CCEEEEE
T ss_pred EEeccCCcEEEEEEEECCCCEEEEEECCC-CCEeccc
Confidence 23334665 5666665 9999999986 7776443
No 279
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=0.017 Score=54.23 Aligned_cols=124 Identities=17% Similarity=0.088 Sum_probs=68.7
Q ss_pred CeeEEEe-------CCCCCEEEEe-CCC-------eEEEEEcCCCccee-----eeeecCCCcccCCCCceEEEEEecCC
Q 012721 220 NINSISN-------NSDCETFVSA-DDL-------RINLWNLEISDQCF-----NIVDMKPSNMDDLTEVITSAEFHPIY 279 (457)
Q Consensus 220 ~v~~~~~-------~~~~~~l~~~-~d~-------~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~i~~v~~~p~~ 279 (457)
....++| +++++.|+.+ ..+ .|.+++....+... ..+. .+ .....++++|++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~----~~----~~p~giavdp~~ 258 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA----AY----KQCNGATIHPIN 258 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE----EE----SCCCCEEECTTT
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec----cC----CCceEEEEcCCC
Confidence 5778999 9999866665 332 36666644212221 1210 11 234567889955
Q ss_pred ccEEEEEccCCeEEEEEcc-------CCeeeccccccccccccccCcccce-eccccceEEEEEccCCCeEEEEe-c-Cc
Q 012721 280 CNLLAYSSSRGFVRLVDMR-------QSALCDHSARILRDAAESHGSKSFF-TEIIASISDIKFANDGQHLLSRD-Y-MN 349 (457)
Q Consensus 280 ~~~l~~~~~dg~i~lwd~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~g~~l~s~~-~-~~ 349 (457)
..++++-..++.|..+|+. ++...... ..... . .....+ .+....-..++|+|+|++|..++ . ..
T Consensus 259 g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~-~~~~~---g-~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~ 333 (496)
T 3kya_A 259 GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPI-VKNNP---N-TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHY 333 (496)
T ss_dssp CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCB-GGGCT---T-TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred CeEEEEECCCCEEEEEecccccccccCceeeccc-ccccc---c-ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCE
Confidence 3777777788999999997 44320000 00000 0 000000 01123457899999999766554 3 88
Q ss_pred EEEEecc
Q 012721 350 LKLWDIR 356 (457)
Q Consensus 350 i~~wd~~ 356 (457)
|+.++..
T Consensus 334 I~kid~d 340 (496)
T 3kya_A 334 FMRSDYD 340 (496)
T ss_dssp EEEEEEE
T ss_pred EEEEecC
Confidence 8887765
No 280
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.60 E-value=0.0012 Score=65.82 Aligned_cols=178 Identities=8% Similarity=-0.021 Sum_probs=94.5
Q ss_pred CeeEEEeCCCCC-EEEEe-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-CeEEEEE
Q 012721 220 NINSISNNSDCE-TFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-GFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~-~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-g~i~lwd 296 (457)
....+++.+.+. ++++- ..+.|.++++. ......++ .........|+++|.+..++++-... +.|..++
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~d-g~~~~~l~-------~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~ 525 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTK-GVKRKTLF-------REQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 525 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSS-SCCEEEEC-------CCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCC
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecC-CCceEEEE-------eCCCCCcceEEEccCCCcEEEcccCCCCeEEEEe
Confidence 345688876444 44444 77899999987 33322221 11223456788998762444433222 6777777
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+...... .+... .-.....|+|+|++..|+.++. +.|..+++. +.....+........
T Consensus 526 ~dG~~~~----~l~~~-------------~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~d--G~~~~~~~~~~~~~~- 585 (699)
T 1n7d_A 526 LNGVDIY----SLVTE-------------NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN--GGNRKTILEDEKRLA- 585 (699)
T ss_dssp SSSCCCC----EESCS-------------SCSSCCCEEECTTTCCEEEEETTTTEEEEECSS--SSCCEEECCCSSSCS-
T ss_pred CCCCCee----EEEeC-------------CCCCccEEEEeccCCEEEEEecCCCeEEEEccC--CCceEEEEecCCcCC-
Confidence 6543210 11110 0124567999998777766543 789999886 333333321110000
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee-eeccC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP-ILQAA 438 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~-~~~p~ 438 (457)
.. ..+++..+ .++++....+.|..++..++ +...++.........+ .++|.
T Consensus 586 --------~P---~glavd~~-~lywtd~~~~~V~~~d~~~G-~~~~~i~~~~~~P~~i~v~~~~ 637 (699)
T 1n7d_A 586 --------HP---FSLAVFED-KVFWTDIINEAIFSANRLTG-SDVNLLAENLLSPEDMVLFHQL 637 (699)
T ss_dssp --------SC---CCCEEETT-EEEEECSTTTCEEEEETTTE-EEEECCCTTCSSCCCCCBCSSS
T ss_pred --------Cc---eEeEEECC-EEEEEeCCCCeEEEEEccCC-CceEEeecCCCCCcEEEEeCcc
Confidence 00 35666544 44445556789999998887 4444443333233334 34443
No 281
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.57 E-value=0.039 Score=49.26 Aligned_cols=158 Identities=8% Similarity=0.004 Sum_probs=88.7
Q ss_pred CCCeeEEEeCCCCCEEEEeCCCeEEE-EEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 218 DFNINSISNNSDCETFVSADDLRINL-WNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 218 ~~~v~~~~~~~~~~~l~~~~d~~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
...+..+.+.+++.+++.+.++.+.. .|- .+...+.+. ......+..+.+.+++ .+++. +.+|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~--gG~tW~~~~------~~~~~~~~~~~~~~~g-~~~~~-~~~G~~~~s~ 231 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP--GQTAWEPHN------RTTSRRLHNMGFTPDG-RLWMI-VNGGKIAFSD 231 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECT--TCSSCEEEE------CCSSSCEEEEEECTTS-CEEEE-ETTTEEEEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCC--CCCceeECC------CCCCCccceeEECCCC-CEEEE-eCCceEEEec
Confidence 34678899999998888884454443 332 133333321 1234568889999987 66544 4578777764
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLC 376 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 376 (457)
...++ .+.. ...+. ..+...+..+.+.+++.+++++.++.|. +..+ .++....+........
T Consensus 232 ~D~G~-------tW~~-~~~~~-----~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D-gG~tW~~~~~~~~~~~--- 293 (327)
T 2xbg_A 232 PDNSE-------NWGE-LLSPL-----RRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQD-GGQTWQQDVDVKKVPS--- 293 (327)
T ss_dssp TTEEE-------EECC-CBCTT-----SSCCSCEEEEEESSSSCEEEEESTTCEE-EESS-TTSSCEECGGGTTSSS---
T ss_pred CCCCC-------eeEe-ccCCc-----ccCCcceEEEEecCCCEEEEEeCCCeEE-EeCC-CCcccEEcCccCCCCC---
Confidence 33232 1211 00000 0011358889999988888888777663 4433 2444444332111000
Q ss_pred cccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEec
Q 012721 377 DLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSH 413 (457)
Q Consensus 377 ~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~ 413 (457)
....+.|.+++. ++.++.+|.|.-++-
T Consensus 294 ---------~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 294 ---------NFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp ---------CCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred ---------CeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 115788875555 556677898776653
No 282
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.54 E-value=0.043 Score=48.95 Aligned_cols=184 Identities=10% Similarity=0.007 Sum_probs=99.2
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
.+..+.+.+++..++++.++.|.. ....++...... ......+..+.+.|++ .+++.+...+..+-.|-.
T Consensus 123 ~~~~i~~~~~~~~~~~~~~g~v~~--S~DgG~tW~~~~------~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~g- 192 (327)
T 2xbg_A 123 SPRLIKALGNGSAEMITNVGAIYR--TKDSGKNWQALV------QEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPG- 192 (327)
T ss_dssp CEEEEEEEETTEEEEEETTCCEEE--ESSTTSSEEEEE------CSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTT-
T ss_pred CeEEEEEECCCCEEEEeCCccEEE--EcCCCCCCEEee------cCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCC-
Confidence 456676666676666665554432 222444444331 2344568899999988 777776554444444421
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (457)
+ ..+.... ......+..+.+.+++++++.+.+|.+++.+.+. ++....+......
T Consensus 193 G-------~tW~~~~---------~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~-G~tW~~~~~~~~~-------- 247 (327)
T 2xbg_A 193 Q-------TAWEPHN---------RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRR-------- 247 (327)
T ss_dssp C-------SSCEEEE---------CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTE-EEEECCCBCTTSS--------
T ss_pred C-------CceeECC---------CCCCCccceeEECCCCCEEEEeCCceEEEecCCC-CCeeEeccCCccc--------
Confidence 1 1111100 0112468889999999888777678777764221 2222222111000
Q ss_pred CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEe---cCCCcceeeeeccCCcceec
Q 012721 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVE---AGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~~~ 444 (457)
.-..+..+.+.+++..++++. +|.| ++..+.| +.-..+. .....+..+.|.+++...+.
T Consensus 248 ---~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG-~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~ 309 (327)
T 2xbg_A 248 ---NSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGG-QTWQQDVDVKKVPSNFYKILFFSPDQGFIL 309 (327)
T ss_dssp ---CCSCEEEEEESSSSCEEEEES-TTCE-EEESSTT-SSCEECGGGTTSSSCCCEEEEEETTEEEEE
T ss_pred ---CCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCC-cccEEcCccCCCCCCeEEEEEECCCceEEE
Confidence 000125788888877766554 6777 4555555 3333333 23456788888766554444
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.49 E-value=0.016 Score=57.35 Aligned_cols=75 Identities=12% Similarity=0.054 Sum_probs=47.9
Q ss_pred CCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cC-----C
Q 012721 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SR-----G 290 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~d-----g 290 (457)
....++++..++++++.| .+..+.+||.. ...-...- .+..... -.+++..+++ ++++.|+ .+ .
T Consensus 243 ~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~-t~~W~~~~-----~~~~~R~-~~s~~~~~dg-~iyv~GG~~~~~~~~~ 314 (656)
T 1k3i_A 243 MFCPGISMDGNGQIVVTGGNDAKKTSLYDSS-SDSWIPGP-----DMQVARG-YQSSATMSDG-RVFTIGGSWSGGVFEK 314 (656)
T ss_dssp CSSCEEEECTTSCEEEECSSSTTCEEEEEGG-GTEEEECC-----CCSSCCS-SCEEEECTTS-CEEEECCCCCSSSCCC
T ss_pred CccccccCCCCCCEEEeCCCCCCceEEecCc-CCceeECC-----CCCcccc-ccceEEecCC-eEEEEeCcccCCcccc
Confidence 334457777899999887 56789999988 33222211 1111111 1344566788 8888888 34 5
Q ss_pred eEEEEEccCCe
Q 012721 291 FVRLVDMRQSA 301 (457)
Q Consensus 291 ~i~lwd~~~~~ 301 (457)
.+.+||..+.+
T Consensus 315 ~~e~yd~~t~~ 325 (656)
T 1k3i_A 315 NGEVYSPSSKT 325 (656)
T ss_dssp CEEEEETTTTE
T ss_pred cceEeCCCCCc
Confidence 68999998764
No 284
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.49 E-value=0.091 Score=51.46 Aligned_cols=162 Identities=7% Similarity=-0.013 Sum_probs=95.0
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE-ccCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS-SSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~-~~dg~i~lwd 296 (457)
....+++.+.+..|+.+ ..+.|.+.+++ ......+ ....-.....|+++|..+.++.+- +..+.|...+
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d-G~~~~~l-------~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~ 152 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLD-GQHRQVL-------VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAA 152 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-STTCEEE-------ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecC-CCcEEEE-------EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEe
Confidence 35577887665555554 77899999987 3322222 112334578999998652444443 2356788887
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+...... .+... ......|+++++++.|..++. +.|..+|+.. .....+...-..
T Consensus 153 ~dG~~~~----~l~~~--------------~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG--~~~~v~~~~l~~--- 209 (628)
T 4a0p_A 153 MDGSERT----TLVPN--------------VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG--LNREVIADDLPH--- 209 (628)
T ss_dssp TTSCSCE----EEECS--------------CSSEEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEEECCSC---
T ss_pred CCCCceE----EEECC--------------CCCcceEEEccccCEEEEEECCCCEEEEEcCCC--CceEEeeccCCC---
Confidence 7654311 11111 245789999998888877653 8899999863 222233221110
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAG 426 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 426 (457)
. ..+++.. +...++-...+.|...|..+++. ..++...
T Consensus 210 ---------P---~glav~~-~~ly~tD~~~~~I~~~dk~tg~~-~~~l~~~ 247 (628)
T 4a0p_A 210 ---------P---FGLTQYQ-DYIYWTDWSRRSIERANKTSGQN-RTIIQGH 247 (628)
T ss_dssp ---------E---EEEEEET-TEEEEEETTTTEEEEEETTTCCS-CEEEECS
T ss_pred ---------c---eEEEEEC-CEEEEecCCCCEEEEEECCCCCc-eEEEecC
Confidence 0 3677754 34444444578899999888843 3444433
No 285
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.48 E-value=0.033 Score=49.48 Aligned_cols=157 Identities=8% Similarity=-0.038 Sum_probs=93.9
Q ss_pred CeeEEEeCCCCCEEE-Ee-CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 220 NINSISNNSDCETFV-SA-DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~-~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
....++|++.+..|+ +- ..+.|..++++.......++ .........+++.+.+..++++-...+.|.++++
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~-------~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~ 108 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVV-------VSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNL 108 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEE-------EECCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEE-------cCCCCCccEEEEEcCCCeEEEEECCCCEEEEEEC
Confidence 456888988555554 44 78899999988332111111 1112345678898755366666667889999998
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---cCcEEEEeccCCCCceeEeeeccccccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
...... .+... .......++++|.+.+|+.++ .+.|...+++ +.....+.......+
T Consensus 109 dG~~~~----~l~~~-------------~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d--G~~~~~~~~~~l~~P- 168 (318)
T 3sov_A 109 DGSLRK----VLFWQ-------------ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD--GSSRFIIINSEIYWP- 168 (318)
T ss_dssp TSCSCE----EEECS-------------SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT--SCSCEEEECSSCSCE-
T ss_pred CCCcEE----EEEeC-------------CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC--CCCeEEEEECCCCCc-
Confidence 754211 11111 123467899999766666544 2677777765 443333321111110
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~ 416 (457)
..+++++++..|+.+. ..+.|..+++...
T Consensus 169 -------------nglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 169 -------------NGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp -------------EEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred -------------cEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 4799999766666554 4678999998643
No 286
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.45 E-value=0.022 Score=50.16 Aligned_cols=179 Identities=9% Similarity=0.013 Sum_probs=101.5
Q ss_pred CCeeEEEeCC-CCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCcc-cCCCCceEEEEE---ecCCccEEEEEcc----
Q 012721 219 FNINSISNNS-DCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEF---HPIYCNLLAYSSS---- 288 (457)
Q Consensus 219 ~~v~~~~~~~-~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~---~p~~~~~l~~~~~---- 288 (457)
..-.+++|++ ++.++++. ..+.|..||.. .+....+ ....... ......+..|.| .|++ .++++...
T Consensus 13 ~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~-~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~~af 89 (334)
T 2p9w_A 13 LTPEDTIYDRTRQVFYQSNLYKGRIEVYNPK-TQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNAKSF 89 (334)
T ss_dssp CCCSCEEEETTTTEEEEEETTTTEEEEECTT-TCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEETTTT
T ss_pred cCCcCccCcCCCCEEEEEeccCCEEEEEcCC-CCeEEEE-ecCCccccCCCcceeeEEEEeccCCCC-cEEEEEcccccc
Confidence 3445789977 45555555 89999999987 3433333 1110000 011124578999 6887 88776442
Q ss_pred ---------CCeEEEEEcc---CCeeeccccccccccccccCcccceec-cccceEEEEEccCCCeEEEEec--CcEEEE
Q 012721 289 ---------RGFVRLVDMR---QSALCDHSARILRDAAESHGSKSFFTE-IIASISDIKFANDGQHLLSRDY--MNLKLW 353 (457)
Q Consensus 289 ---------dg~i~lwd~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~s~~~--~~i~~w 353 (457)
+..|..||+. +++.. ..... ...........+ -......++..++|+..++++. +.|...
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~----~~~dL-~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV 164 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPV----WSVNF-EKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARV 164 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCS----EEEES-HHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEE
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEE----EEecC-ccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEE
Confidence 6789999998 55432 11110 000000000000 0124789999999998887663 555555
Q ss_pred eccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 354 DIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 354 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
+.. ++.+..+........ .......++++|||..|++....|.|..+|+.+.
T Consensus 165 ~pd--G~~~~~~~~~~~~~~---------~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 165 SAD--GKTVSTFAWESGNGG---------QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CTT--SCCEEEEEECCCCSS---------SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eCC--CCEEeeeeecCCCcc---------cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 543 554443322111100 0111258999999998888777999999998844
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=97.44 E-value=0.056 Score=47.95 Aligned_cols=157 Identities=9% Similarity=-0.019 Sum_probs=93.5
Q ss_pred CeeEEEeCCCCCEEEE-e-CCCeEEEEEcCCC---cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEE
Q 012721 220 NINSISNNSDCETFVS-A-DDLRINLWNLEIS---DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRL 294 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~-~-~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~l 294 (457)
....++|++++..|+. - .++.|..++++.. .....+ +.........+++++.+.+++++-...+.|.+
T Consensus 31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~-------~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~ 103 (316)
T 1ijq_A 31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTV-------ISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSV 103 (316)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEE-------ECSSCSCCCEEEEETTTTEEEEEETTTTEEEE
T ss_pred ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEE-------EeCCCCCcCEEEEeecCCeEEEEECCCCEEEE
Confidence 5678999986655554 4 7899999998731 111212 11122345788898755266666677889999
Q ss_pred EEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe--c-CcEEEEeccCCCCceeEeeecccc
Q 012721 295 VDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD--Y-MNLKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 295 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~--~-~~i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
+|+...... .+... .......++++|.+.+|+.++ . +.|...+++ +.....+......
T Consensus 104 ~~~~g~~~~----~~~~~-------------~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d--G~~~~~~~~~~~~ 164 (316)
T 1ijq_A 104 ADTKGVKRK----TLFRE-------------NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN--GVDIYSLVTENIQ 164 (316)
T ss_dssp EETTSSSEE----EEEEC-------------TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT--SCCEEEEECSSCS
T ss_pred EeCCCCceE----EEEEC-------------CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC--CCCeEEEEECCCC
Confidence 998754211 11111 013467899999766665443 2 677777775 4444333211111
Q ss_pred ccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCCC
Q 012721 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGVG 416 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~~ 416 (457)
. ...+++++++..|+.+. ..+.|..+++...
T Consensus 165 ~--------------P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 165 W--------------PNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp C--------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred C--------------ceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 0 05799998877666555 4578999998743
No 288
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.39 E-value=0.066 Score=47.55 Aligned_cols=160 Identities=8% Similarity=0.071 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEE--ecCCcc-EEEEEccCCeEEEEEccC---Ceeecccccccc
Q 012721 238 DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEF--HPIYCN-LLAYSSSRGFVRLVDMRQ---SALCDHSARILR 311 (457)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~--~p~~~~-~l~~~~~dg~i~lwd~~~---~~~~~~~~~~~~ 311 (457)
+++|.+|++......+..+......+..-...+..+|+ +|.... ++++...+|.+..|++.. ++...+.++.+.
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~ 177 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK 177 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence 68999997742222233321000001011145666777 664423 677788889999999843 322222334444
Q ss_pred ccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCC----CceeEeeeccccccccccccCCCCccc
Q 012721 312 DAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDS----TPVATFKIHEHLRPKLCDLYNNDSIFD 386 (457)
Q Consensus 312 ~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (457)
. .+.+..+...+....|+.+.. ..|..++.+... +.+..+. .... ..+
T Consensus 178 l--------------gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~-~g~l------------~aD 230 (355)
T 3amr_A 178 M--------------NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD-GRHL------------TRD 230 (355)
T ss_dssp C--------------SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS-SSSB------------CSC
T ss_pred C--------------CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec-CCcc------------ccC
Confidence 3 356888999988888888875 335555544211 2232221 1111 012
Q ss_pred cceEEE--cCCCc-EEEEEe-CCCcEEEEecCCCCceeeEEe
Q 012721 387 KFECSV--SGDGL-HFATGS-YSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 387 v~~~~~--s~d~~-~l~s~~-~dg~i~iw~~~~~~~~~~~~~ 424 (457)
+..+++ .++++ ||++++ .++++.+||.....+.+..+.
T Consensus 231 vEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 231 IEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp EEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred cceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 235665 55655 666666 577999999973224444443
No 289
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.35 E-value=0.043 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.118 Sum_probs=23.2
Q ss_pred CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccc
Q 012721 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
.+..++.++ ++.|+.+|.++ ++.+..+.....
T Consensus 474 ~gg~v~~g~~dg~l~a~D~~t-G~~lw~~~~~~~ 506 (571)
T 2ad6_A 474 KGGLVWYATLDGYLKALDNKD-GKELWNFKMPSG 506 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred CCCEEEEEcCCCeEEEEECCC-CCEEEEEeCCCC
Confidence 345566665 49999999986 888887775543
No 290
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.31 E-value=0.015 Score=51.19 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=53.0
Q ss_pred CeeEEEeCCCCCEEEEe-CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 220 NINSISNNSDCETFVSA-DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
....++..++|+..+++ .. +.|...+.+ ++....+.+... ........+.|+++|+| .+|++....|.|..+|+
T Consensus 138 ~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~~~~~~~~~-~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~ 213 (334)
T 2p9w_A 138 GVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTVSTFAWESG-NGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDV 213 (334)
T ss_dssp EEEEEEECTTSCEEEEEEESSCEEEEECTT--SCCEEEEEECCC-CSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEEC
T ss_pred CCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEEeeeeecCC-CcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcC
Confidence 47889999999999987 66 777777766 333333322211 11122346789999999 77777766999999998
Q ss_pred cC
Q 012721 298 RQ 299 (457)
Q Consensus 298 ~~ 299 (457)
..
T Consensus 214 ~~ 215 (334)
T 2p9w_A 214 SK 215 (334)
T ss_dssp SS
T ss_pred CC
Confidence 84
No 291
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.31 E-value=0.11 Score=48.71 Aligned_cols=180 Identities=8% Similarity=0.016 Sum_probs=91.6
Q ss_pred eeEEEeCCC-CCEEEEe-CCCeEEEEEcCC------Ccce-----------e-eeeecCCCcccCCCCceEEEEEecCCc
Q 012721 221 INSISNNSD-CETFVSA-DDLRINLWNLEI------SDQC-----------F-NIVDMKPSNMDDLTEVITSAEFHPIYC 280 (457)
Q Consensus 221 v~~~~~~~~-~~~l~~~-~d~~i~iwd~~~------~~~~-----------~-~~~~~~~~~~~~~~~~i~~v~~~p~~~ 280 (457)
...++++|+ +.++++- .++.|..+|+.. .+.. . .++. . +.....+.|+|+|+|
T Consensus 249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~-----~-~~~~~p~~ia~~p~G- 321 (496)
T 3kya_A 249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFT-----I-ADPSWEFQIFIHPTG- 321 (496)
T ss_dssp CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEE-----C-SSSSCCEEEEECTTS-
T ss_pred ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEe-----c-CCCCCceEEEEcCCC-
Confidence 457788995 4545555 888999999871 1211 1 1111 1 123456899999999
Q ss_pred cE-EEEEccCCeEEEEEccC--Ceeeccccccccc------cccccCcccceeccccceE-EEEEc-------cCCCeEE
Q 012721 281 NL-LAYSSSRGFVRLVDMRQ--SALCDHSARILRD------AAESHGSKSFFTEIIASIS-DIKFA-------NDGQHLL 343 (457)
Q Consensus 281 ~~-l~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~------~~~~~~~~~~~~~h~~~v~-~~~~s-------~~g~~l~ 343 (457)
+. +++-.....|+.++... +... ...++.+ +.+.+.....| ..-. .++.. ++|.+.+
T Consensus 322 ~~lYvaD~~~h~I~kid~dg~~~~~~--~~~~~aG~~g~~G~~DG~~~~a~f----~~P~~gv~vd~~~~~~~~~g~lyV 395 (496)
T 3kya_A 322 KYAYFGVINNHYFMRSDYDEIKKEFI--TPYNFVGGYKQSGYRDDVGTEARM----NNPCQGVFVKNPDYTGEEEYDFYF 395 (496)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEC--CCEEEEEBTTBCCCBCCBGGGCBC----SSEEEEEEEECTTCCSSCCEEEEE
T ss_pred CEEEEEeCCCCEEEEEecCCCcceec--ccEEecCCCCCCcccCCccccccc----CCCeEEEEEccccccccCCCeEEE
Confidence 74 45445678898866543 2110 0011111 00000000001 1223 44444 4455555
Q ss_pred EEec-CcEEEEeccCCCCceeEeeeccccc--------ccccc-ccCCCCccccceEEEcCC-CcEEEEEeCCCcEEEEe
Q 012721 344 SRDY-MNLKLWDIRMDSTPVATFKIHEHLR--------PKLCD-LYNNDSIFDKFECSVSGD-GLHFATGSYSNLLRIFS 412 (457)
Q Consensus 344 s~~~-~~i~~wd~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~v~~~~~s~d-~~~l~s~~~dg~i~iw~ 412 (457)
+-.. .+|+.++.. + .+.++.+..... ..... .-.......-..++++++ +.++++=..+.+|+.++
T Consensus 396 aD~~N~rIr~i~~~--G-~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~ 472 (496)
T 3kya_A 396 VDRLNFCVRKVTPE--G-IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTIS 472 (496)
T ss_dssp EEGGGTEEEEECTT--C-BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCEEEEEeCC--C-CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEE
Confidence 4444 889999842 4 455554432100 00000 000001111257899987 77666666778899999
Q ss_pred cCCC
Q 012721 413 HGVG 416 (457)
Q Consensus 413 ~~~~ 416 (457)
+...
T Consensus 473 ~~~~ 476 (496)
T 3kya_A 473 MEQE 476 (496)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8755
No 292
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.31 E-value=0.15 Score=49.89 Aligned_cols=157 Identities=11% Similarity=0.015 Sum_probs=90.7
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd 296 (457)
....+++.+.+..|+.+ ..+.|.+.+++ ......++ .........|+++|.++.++++-- ..+.|...+
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d-G~~~~~l~-------~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~ 156 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLD-GSLRKVLF-------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAG 156 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEE-------CSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECC-CCCEEEEE-------eCCCCCCceEEEecCCCeEEEeccCCCCEEEEEE
Confidence 56788998866655554 78999999998 33222221 123345678999997524444432 246677777
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+...... .+... .-.....+++++++..|..++. +.|...|++ +.....+.......
T Consensus 157 ~dG~~~~----~l~~~-------------~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~~~~-- 215 (619)
T 3s94_A 157 MDGSSRF----IIINS-------------EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD--GTNRQAVVKGSLPH-- 215 (619)
T ss_dssp TTSCSCE----EEECS-------------SCSSEEEEEEETTTTEEEEEETTTCCEEEESSS--CCEEC-----------
T ss_pred CCCCceE----EEEeC-------------CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCC--CCccEEEEeCCCCC--
Confidence 6543211 11111 1135688999998777776653 788888875 33222221100000
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCc
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSA 418 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~ 418 (457)
. ..+++..+ ....+-...+.|...|..+++.
T Consensus 216 ---------P---~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~ 246 (619)
T 3s94_A 216 ---------P---FALTLFED-ILYWTDWSTHSILACNKYTGEG 246 (619)
T ss_dssp ---------C---CCEEESSS-EEEEECTTTCSEEEEESSSCCC
T ss_pred ---------c---eEEEEeCC-EEEEecCCCCEEEEEECCCCcc
Confidence 0 36777655 4444445678899999988843
No 293
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.23 E-value=0.02 Score=55.69 Aligned_cols=57 Identities=7% Similarity=0.032 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721 237 DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 237 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
.++.|..||+.+.+...+. ... ..+..-.....+ .+++.++.||.++.||.++++..
T Consensus 464 ~~G~l~A~D~~tG~~~W~~-~~~--------~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~l 520 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEH-KEH--------LPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKEL 520 (582)
T ss_dssp CSEEEEEECTTTCCEEEEE-EES--------SCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCEE
T ss_pred CcceEEEEECCCCCEEEEe-cCC--------CCCcccceEeCC-CEEEEECCCCcEEEEECCCCCEE
Confidence 3688999999844443332 111 111111122234 67778999999999999999754
No 294
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.20 E-value=0.017 Score=53.80 Aligned_cols=136 Identities=8% Similarity=0.059 Sum_probs=82.1
Q ss_pred CceEEEEEec-CCccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 268 EVITSAEFHP-IYCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 268 ~~i~~v~~~p-~~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
.....++++| ++ ..|.++...+.|+.+|+..+... .+... ......++|+++|++|+.++
T Consensus 137 ~~P~~lavdp~~~-g~Lyv~d~~~~I~~id~~~~~v~----~~~~~--------------~~~P~~ia~d~~G~~lyvad 197 (430)
T 3tc9_A 137 GGAVWLSFDPKNH-NHLYLVGEQHPTRLIDFEKEYVS----TVYSG--------------LSKVRTICWTHEADSMIITN 197 (430)
T ss_dssp SCCCEEEEETTEE-EEEEEEEBTEEEEEEETTTTEEE----EEECC--------------CSCEEEEEECTTSSEEEEEE
T ss_pred CCCCEEEECCCCC-CeEEEEeCCCcEEEEECCCCEEE----EEecC--------------CCCcceEEEeCCCCEEEEEe
Confidence 3457889998 34 44555555588999998876432 11111 24578999999999666554
Q ss_pred c--C----cEEEEeccCCCCce--eEeeeccccccccccccCCCCccccceEEEcC-CCcEEEEEeCCCcEEEEecCCCC
Q 012721 347 Y--M----NLKLWDIRMDSTPV--ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG-DGLHFATGSYSNLLRIFSHGVGS 417 (457)
Q Consensus 347 ~--~----~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~dg~i~iw~~~~~~ 417 (457)
. + .+.+++.. +... ..+...... ..++++| ++.++++-..++.|+.++..++.
T Consensus 198 ~~~~~~~~~v~~~~~~--g~~~~~~~l~~~~~p----------------~giavdp~~g~lyv~d~~~~~V~~~~~~~~~ 259 (430)
T 3tc9_A 198 DQNNNDRPNNYILTRE--SGFKVITELTKGQNC----------------NGAETHPINGELYFNSWNAGQVFRYDFTTQE 259 (430)
T ss_dssp CCSCTTSEEEEEEEGG--GTSCSEEEEEECSSC----------------CCEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred CCCCcccceEEEEeCC--CceeeeeeeccCCCc----------------eEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence 2 2 23334432 2222 222221111 4789999 67766666678899999998762
Q ss_pred ceeeEEecCCCcceeeeeccCCc
Q 012721 418 AGGITVEAGKNENRKPILQAAPR 440 (457)
Q Consensus 418 ~~~~~~~~~~~~v~~~~~~p~~~ 440 (457)
.......+.....+.++++|++.
T Consensus 260 ~~~~~~~~~~~~P~gia~~pdG~ 282 (430)
T 3tc9_A 260 TTPLFTIQDSGWEFHIQFHPSGN 282 (430)
T ss_dssp EEEEEECSSSSCCEEEEECTTSS
T ss_pred EEEEEEcCCCCcceeEEEcCCCC
Confidence 21111122224467899999987
No 295
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.10 E-value=0.075 Score=47.71 Aligned_cols=167 Identities=10% Similarity=0.069 Sum_probs=91.2
Q ss_pred CeeEEEeCCCCCEEEEe-------------CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec--CCcc-EE
Q 012721 220 NINSISNNSDCETFVSA-------------DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCN-LL 283 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~-~l 283 (457)
..-.+...|+|..++++ .+|.|.++|.+........+.....++.........+.+.+ ++.. ++
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34466677887766665 58899999987332222222211000122334677788766 3422 44
Q ss_pred EEEcc--CCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe----c----------
Q 012721 284 AYSSS--RGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD----Y---------- 347 (457)
Q Consensus 284 ~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~----~---------- 347 (457)
++-.. +.+|.+|++............+.. . .-...+.+.+.++|.+.++.. +
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g----~--------~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~ 198 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH----K--------LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHL 198 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECC----T--------TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHT
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEecccc----C--------CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhc
Confidence 44333 567888887654221111122221 0 024578999999999887753 1
Q ss_pred --CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEe-CCCcEEEEecCC
Q 012721 348 --MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGS-YSNLLRIFSHGV 415 (457)
Q Consensus 348 --~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~-~dg~i~iw~~~~ 415 (457)
..=.+|.+.. ++......+-... ..++|+||++.|+.+. ..+.|+.|++..
T Consensus 199 ~~~~g~vyr~d~-~~~~~~~~~l~~p----------------NGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 199 GLAWSFVTYYSP-NDVRVVAEGFDFA----------------NGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp TCCCEEEEEECT-TCCEEEEEEESSE----------------EEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cCCccEEEEEEC-CeEEEeecCCccc----------------CcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 1123343332 2222112211111 4799999998777665 568899999864
No 296
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=97.10 E-value=0.16 Score=49.36 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=23.6
Q ss_pred CCCeEEEEe-cCcEEEEeccCCCCceeEeeeccc
Q 012721 338 DGQHLLSRD-YMNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 338 ~g~~l~s~~-~~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
.+.+++.++ ++.++.||.++ ++.+-+++....
T Consensus 483 agg~vf~gt~dg~l~A~D~~t-G~~lW~~~l~~g 515 (599)
T 1w6s_A 483 AGDLVFYGTLDGYLKARDSDT-GDLLWKFKIPSG 515 (599)
T ss_dssp TTTEEEEECTTSEEEEEETTT-CCEEEEEECSSC
T ss_pred cCCEEEEECCCCeEEEEECCC-CCEEEEeeCCCC
Confidence 355666665 59999999987 888877765543
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.05 E-value=0.16 Score=45.51 Aligned_cols=135 Identities=8% Similarity=0.117 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCcceeeeeecCCCcccC-CCCceEEEEEecCCccEEEEEcc-----------------CCeEEEEEccC
Q 012721 238 DLRINLWNLEISDQCFNIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSS-----------------RGFVRLVDMRQ 299 (457)
Q Consensus 238 d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~-----------------dg~i~lwd~~~ 299 (457)
+..|.+|+++..+.....+. ++.+ .-.....+.+.++| .+.++... .|.|..+|.
T Consensus 138 ~s~ielf~~d~~~~~~~~~~----~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-- 210 (355)
T 3sre_A 138 SSTVEVFKFQEEEKSLLHLK----TIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-- 210 (355)
T ss_dssp CCEEEEEEEETTTTEEEEEE----EECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--
T ss_pred CCeEEEEEEECCCCEEEEEe----ccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEEEEC--
Confidence 67888888874433333221 1222 23467899999999 77776541 234444443
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe-c-CcEEEEeccCCCCce--eEeeecccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD-Y-MNLKLWDIRMDSTPV--ATFKIHEHLRPKL 375 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~-~-~~i~~wd~~~~~~~~--~~~~~~~~~~~~~ 375 (457)
++.. .+... -..-+.++|+||++.|..++ . +.|..|++...++.. ..+.....+
T Consensus 211 ~~~~----~~~~~--------------l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~P---- 268 (355)
T 3sre_A 211 NDVR----VVAEG--------------FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLV---- 268 (355)
T ss_dssp TCCE----EEEEE--------------ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEE----
T ss_pred CeEE----EeecC--------------CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCC----
Confidence 2110 11111 23568999999999888765 3 899999986433322 122111111
Q ss_pred ccccCCCCccccceEEEcC-CCcEEEEEeCC-CcEEEEec
Q 012721 376 CDLYNNDSIFDKFECSVSG-DGLHFATGSYS-NLLRIFSH 413 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~-d~~~l~s~~~d-g~i~iw~~ 413 (457)
-.+++.+ +|++.+++..+ +.|..|+-
T Consensus 269 ------------DGi~vD~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 269 ------------DNISVDPVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp ------------EEEEECTTTCCEEEEEESCHHHHHSCCT
T ss_pred ------------ceEEEeCCCCcEEEEecCCceEEEEECC
Confidence 3688888 59887766544 34444443
No 298
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.00 E-value=0.21 Score=45.95 Aligned_cols=122 Identities=9% Similarity=0.016 Sum_probs=68.4
Q ss_pred CeeEEEeCCCCCEEEEe--C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA--D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
....++++|.+..|+.+ . .+.|...+++ ......+ ....-.....|++++++..+.++-...+.|..+|
T Consensus 203 ~P~~iavdp~~g~ly~td~~~~~~I~~~~~d-G~~~~~~-------~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d 274 (400)
T 3p5b_L 203 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 274 (400)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCCEEEEETT-SCSCEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcceEEEecccCeEEEEeCCCCCEEEEEeCC-CCccEEE-------EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEe
Confidence 46788999866665554 2 4788888887 3322222 1223356789999987734445545678899999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCceeEee
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPVATFK 366 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~ 366 (457)
+...... .+... .+.......+++.. +.++++... +.|..+|..+ ++.+..+.
T Consensus 275 ~dG~~~~----~~~~~-----------~~~l~~P~gl~v~~-~~lywtd~~~~~V~~~~~~~-G~~~~~i~ 328 (400)
T 3p5b_L 275 VNGGNRK----TILED-----------EKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLT-GSDVNLLA 328 (400)
T ss_dssp TTSCCCE----EEEEC-----------SSTTSSEEEEEEET-TEEEEEESSSCSEEEEESSS-CCCCEEEE
T ss_pred CCCCccE----EEEeC-----------CCCCCCCEEEEEeC-CEEEEecCCCCeEEEEEcCC-CCceEEEe
Confidence 8754211 11111 00012344666632 333334334 8888888644 55444443
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=96.99 E-value=0.36 Score=48.52 Aligned_cols=73 Identities=8% Similarity=0.036 Sum_probs=47.7
Q ss_pred CeeEEEeCCCCCEEEEe--CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
....|+++|.+..|+.+ .+ +.|...+++ ......+ +.........|++++.+..++++=...+.|..+|
T Consensus 515 ~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~d-G~~~~~l-------v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d 586 (791)
T 3m0c_C 515 KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSL-------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSID 586 (791)
T ss_dssp CEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEE-------ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CcceEEEecCCCCEEEecCCCCCeEEEEecC-CCceEEE-------EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 46789999875555554 33 788888887 3333222 1223356889999987634555545667899999
Q ss_pred ccCC
Q 012721 297 MRQS 300 (457)
Q Consensus 297 ~~~~ 300 (457)
+...
T Consensus 587 ~dG~ 590 (791)
T 3m0c_C 587 VNGG 590 (791)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 8654
No 300
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.96 E-value=0.17 Score=44.25 Aligned_cols=166 Identities=5% Similarity=0.026 Sum_probs=91.6
Q ss_pred CCeeEEEeCCCCCEEEE-e---C----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEe--cCCccEEEEEcc
Q 012721 219 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFH--PIYCNLLAYSSS 288 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~--p~~~~~l~~~~~ 288 (457)
..|.....+++.++++. | . .|.+.+|..+ .+ ..+. +++|.+....+.+. +....+++.+..
T Consensus 152 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~-~sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r 222 (365)
T 2xzh_A 152 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RK-VSQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR 222 (365)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETT-TT-EEEE-------ECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred ceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeec-cc-ccce-------eeeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45666777888887764 2 2 3678899988 33 3333 57776655444332 111134554443
Q ss_pred ---CCeEEEEEccCCe-eecc-ccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce
Q 012721 289 ---RGFVRLVDMRQSA-LCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV 362 (457)
Q Consensus 289 ---dg~i~lwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~ 362 (457)
.+.+++-++.... .... ..+..+. ...+ ..-.+--.++..++.-..+..-+. |.|++||+++ +.++
T Consensus 223 ~~~g~kLhIiEi~~~~~~~~~f~kk~vdi-~fpp------ea~~DFPVamqvs~kygviyviTK~G~ihlyDleT-gt~i 294 (365)
T 2xzh_A 223 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 294 (365)
T ss_dssp ETTEEEEEEEECSSCCTTCCCCCCEEEEE-CCCT------TCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred cCCCcEEEEEEcCCCCCCCCCccccccee-eCCc------cccCCceEEEEecccCCEEEEEeCCcEEEEEEccc-CcEE
Confidence 2688888885420 0000 0011111 0011 011233457788877667766554 9999999997 8888
Q ss_pred eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
..-+.....+ +..+-+.+..=++.....|.|.--.++..
T Consensus 295 ~~nrIS~d~i---------------F~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~ 333 (365)
T 2xzh_A 295 YMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE 333 (365)
T ss_dssp EEEECCSSCE---------------EEEEEEGGGTEEEEEETTCEEEEEEECTT
T ss_pred EEeccCCCce---------------EEecccCCCCcEEEEcCCCEEEEEEECcc
Confidence 7766655543 23333333334555557777766666654
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.96 E-value=0.0074 Score=60.12 Aligned_cols=72 Identities=8% Similarity=-0.023 Sum_probs=45.0
Q ss_pred eeEEEeCCCCCEEEEe--CC-CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 221 INSISNNSDCETFVSA--DD-LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~--~d-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
...++++|.+.+|+.+ .. +.|..+++. .. ...++ ..........|+|+|++..++++-...+.|..+|+
T Consensus 498 P~giavDp~~g~ly~td~~~~~~I~~~~~d-G~-~~~~l------~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 498 PRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GV-DIYSL------VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCEECCSSSSCCEECCCSSSCCEEBCCSS-SC-CCCEE------SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred cceEEEccCCCcEEEcccCCCCeEEEEeCC-CC-CeeEE------EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 4577888865555544 33 678888776 22 22211 11122446789999986466666667789999998
Q ss_pred cCC
Q 012721 298 RQS 300 (457)
Q Consensus 298 ~~~ 300 (457)
...
T Consensus 570 dG~ 572 (699)
T 1n7d_A 570 NGG 572 (699)
T ss_dssp SSS
T ss_pred CCC
Confidence 653
No 302
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.92 E-value=0.22 Score=44.91 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=21.3
Q ss_pred CceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721 33 DIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (457)
Q Consensus 33 ~~V~~~~~s~~~~~latg~~dg~i~iw~ 60 (457)
.....|+|.|+|+++++ ..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEe
Confidence 46789999999986655 5668888886
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.88 E-value=0.18 Score=45.83 Aligned_cols=126 Identities=12% Similarity=0.145 Sum_probs=79.4
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcc-----------eeeeeecCCCcccCCCCceEEEEEecCCc--cEEEEE
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQ-----------CFNIVDMKPSNMDDLTEVITSAEFHPIYC--NLLAYS 286 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~v~~~p~~~--~~l~~~ 286 (457)
.|..+..+|+|.+||...+..|.|-.+..... ..+.+.+.+.+ ......|..+.|||-+. ..|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~-~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEE-VGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC---CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcc-cCCCCceeEEEeccccCCCCeEEEE
Confidence 56779999999999998888999988872110 11233333211 11357899999999763 388888
Q ss_pred ccCCeEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEE--ec-CcEEEE
Q 012721 287 SSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSR--DY-MNLKLW 353 (457)
Q Consensus 287 ~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~--~~-~~i~~w 353 (457)
..|+.|++||+...... +. .++. . .....+......|.+++|.+++-.|... +. |.|+-.
T Consensus 146 tsD~~Ir~yDl~~s~~~--P~-~L~k-~---~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEK--PI-VLNK-P---NNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp ETTSCEEEEETTCTTSC--CE-EESC-C---CSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred ecCCEEEEEEcccCCCC--Cc-chhc-c---ccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999873211 11 1111 0 0000112233678999999988766653 34 777643
No 304
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.73 E-value=0.31 Score=43.86 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=22.1
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFE 60 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~ 60 (457)
-.....++|.|+|+++++ ..+|.|.+++
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 345789999999996655 5668898888
No 305
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.63 E-value=0.28 Score=44.72 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=96.6
Q ss_pred eCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccCCeeecc
Q 012721 226 NNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALCDH 305 (457)
Q Consensus 226 ~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~~~ 305 (457)
.+.++..++.+.++.||.-++. .+...+.+..+. .-.-..|..+..+|+| .+||..+ +..|.|-.+..+.....
T Consensus 28 ~~~n~t~i~~a~~n~iR~~~i~-~~~~Yk~L~~~~---~i~f~~i~qlvlSpsG-~lLAl~g-~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 28 SSQNGTRIVFIQDNIIRWYNVL-TDSLYHSLNFSR---HLVLDDTFHVISSTSG-DLLCLFN-DNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp EETTTTEEEEEETTEEEEEETT-TCSSCEEEECTT---TCCCCTTCEEEECTTS-SEEEEEC-SSEEEEEECCTTCSCCC
T ss_pred EEcCCCEEEEEECCEEEEEECC-CCCcceEEecCc---ccccCceeEEEECCCC-CEEEEec-CCeEEEEEecCccccCc
Confidence 3457888888878999998887 333455543220 0012256789999999 8888875 45789988874321111
Q ss_pred c------c--ccccccccccCcccceeccccceEEEEEccCC---CeEEEE-ecCcEEEEeccCC-CCceeEeeeccccc
Q 012721 306 S------A--RILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSR-DYMNLKLWDIRMD-STPVATFKIHEHLR 372 (457)
Q Consensus 306 ~------~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~-~~~~i~~wd~~~~-~~~~~~~~~~~~~~ 372 (457)
. . +.+.. ++ .......+|..+.|+|-+ ..|++- +|+.|++||+... .++. .+.....
T Consensus 102 ~~~~~~~~q~~ty~l---~~----~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~-- 171 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSI---DE----EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNN-- 171 (452)
T ss_dssp CHHHHHTTEEEEEEG---GG----CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCS--
T ss_pred ccccccccceeEEEc---CC----cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhcccc--
Confidence 0 0 11111 00 001124689999999954 456654 5699999999742 2333 3331111
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEEe--CCCcEEE
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGS--YSNLLRI 410 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~--~dg~i~i 410 (457)
.+-..+.+.++.+++|.+++-.|...+ ..|-|+-
T Consensus 172 ----~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 172 ----SFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp ----EEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred ----ccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 011112334567999999877666644 6676654
No 306
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=96.57 E-value=0.34 Score=42.45 Aligned_cols=134 Identities=7% Similarity=-0.062 Sum_probs=69.4
Q ss_pred EeCCCCCEEEEeC---C--CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc-CCeEEEEEcc
Q 012721 225 SNNSDCETFVSAD---D--LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS-RGFVRLVDMR 298 (457)
Q Consensus 225 ~~~~~~~~l~~~~---d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~-dg~i~lwd~~ 298 (457)
.++++++.|+-.. + ..|+..+++ .....++ ..+.. .++++++ +.|...+. ...|..-++.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~l--------t~~~~----~~~~~~g-~~iy~t~~g~~~Iy~~~l~ 175 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKI--------KNHYL----FTCNTSD-RYFYYNNPKNGQLYRYDTA 175 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEE--------ESSCC----CCSEEET-TEEEEECTTTCCEEEEETT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEE--------eCCCc----eEeeEEC-CEEEEEeCCCceEEEEECC
Confidence 5666787777652 3 445555555 2222222 22222 3467888 55554443 6778887876
Q ss_pred CCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec---CcEEEEeccCCCCceeEeeecccccccc
Q 012721 299 QSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY---MNLKLWDIRMDSTPVATFKIHEHLRPKL 375 (457)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~---~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 375 (457)
.+... +++.. ... ..+.|++.+|+-.+. ..|..-++. +.....+... .
T Consensus 176 g~~~~----~l~~~----------------~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ld--G~~~~~Lt~~--~---- 226 (302)
T 3s25_A 176 SQSEA----LFYDC----------------NCY-KPVVLDDTNVYYMDVNRDNAIVHVNIN--NPNPVVLTEA--N---- 226 (302)
T ss_dssp TTEEE----EEECS----------------CEE-EEEEEETTEEEEEEGGGTTEEEEECSS--SCCCEECSCS--C----
T ss_pred CCCEE----EEeCC----------------Ccc-ceeeecCCEEEEEEcCCCcEEEEEECC--CCCeEEEeCC--C----
Confidence 65321 22222 122 235699999885432 344444443 4444444311 1
Q ss_pred ccccCCCCccccceEEEcCCCcEEEEEeC--CCcEEEEecC
Q 012721 376 CDLYNNDSIFDKFECSVSGDGLHFATGSY--SNLLRIFSHG 414 (457)
Q Consensus 376 ~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--dg~i~iw~~~ 414 (457)
...|+|++.+|+-++. .+.|..-++.
T Consensus 227 -------------~~~~~~~g~~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 227 -------------IEHYNVYGSLIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp -------------EEEEEEETTEEEEEECSSSCEEEEEETT
T ss_pred -------------cceEEECCCEEEEEECCCCcEEEEEECC
Confidence 2347778887776533 3445555554
No 307
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.52 E-value=0.47 Score=43.32 Aligned_cols=166 Identities=5% Similarity=0.019 Sum_probs=95.0
Q ss_pred CCeeEEEeCCCCCEEEE-e---C----CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec--CCccEEEEEcc
Q 012721 219 FNINSISNNSDCETFVS-A---D----DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP--IYCNLLAYSSS 288 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~-~---~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p--~~~~~l~~~~~ 288 (457)
..|.....+++.++++. | . .|.+.+|.++ .+. .+. +++|......+.... ..+.+++.+..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~e-r~~-sQ~-------ieGhaa~F~~~~~~g~~~~~~lf~fa~r 221 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKV-SQP-------IEGHAASFAQFKMEGNAEESTLFCFAVR 221 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEEST-TCC-EEE-------ECCSEEEEEEEECTTCSSEEEEEEEEEC
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeecc-ccc-cch-------heeeeeeeEEEecCCCCCCceEEEEEEe
Confidence 45667777888888764 2 2 3678899988 333 222 578876655544321 11135555544
Q ss_pred C---CeEEEEEccCCe-eecc-ccccccccccccCcccceeccccceEEEEEccCCCeEEEEec-CcEEEEeccCCCCce
Q 012721 289 R---GFVRLVDMRQSA-LCDH-SARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY-MNLKLWDIRMDSTPV 362 (457)
Q Consensus 289 d---g~i~lwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~-~~i~~wd~~~~~~~~ 362 (457)
. +.+++-++.... .... ..+..+. ...+ ..-.+--.++..++.-..+..-+. |.|++||+++ +.++
T Consensus 222 ~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv-~fpp------e~~~DFPvamqvs~kygviyviTK~G~i~lyDleT-gt~i 293 (494)
T 1bpo_A 222 GQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLET-GTCI 293 (494)
T ss_dssp STTCCEEEEEECSCCCTTCCCCCCEEEEC-CCCT------TSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTT-CCEE
T ss_pred cCCCcEEEEEEcCCCccCCCCccceeeee-eCCc------ccccCceeEEEecccCCEEEEEecCceEEEEeccc-ceee
Confidence 3 789999885430 0000 0011111 0011 111233457888887777776655 9999999997 7888
Q ss_pred eEeeeccccccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 363 ATFKIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
..-+.....+ +..+-..+..=++.....|.|.--.++..
T Consensus 294 ~~nrIs~~~i---------------F~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 294 YMNRISGETI---------------FVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEECCSSCE---------------EEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eeecccCCce---------------EEecccCCCCcEEEEccCceEEEEEEccc
Confidence 7766555443 23334444444555667787776666654
No 308
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.41 E-value=0.47 Score=42.14 Aligned_cols=130 Identities=11% Similarity=0.150 Sum_probs=75.9
Q ss_pred CeeEEEe--CCC-CC-EEEEe-CCCeEEEEEcCCC------cceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEcc
Q 012721 220 NINSISN--NSD-CE-TFVSA-DDLRINLWNLEIS------DQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSS 288 (457)
Q Consensus 220 ~v~~~~~--~~~-~~-~l~~~-~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~ 288 (457)
.+..+++ +|. +. +++.. .++.+..|++... .+.++.+.+ ...+-.+...+.. ..|+.+-+
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l--------gsq~EgcvvDd~~-g~Lyv~eE 199 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM--------NSQTEGMAADDEY-GRLYIAEE 199 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC--------SSCEEEEEEETTT-TEEEEEET
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC--------CCCcceEEEcCCC-CeEEEecc
Confidence 4556666 664 44 45555 8899999998421 233333322 2467788888877 78888888
Q ss_pred CCeEEEEEccCCeee-ccccccccccccccCcccceeccccceEEEEE--ccCCC-eEEEEe--cCcEEEEeccCCCCce
Q 012721 289 RGFVRLVDMRQSALC-DHSARILRDAAESHGSKSFFTEIIASISDIKF--ANDGQ-HLLSRD--YMNLKLWDIRMDSTPV 362 (457)
Q Consensus 289 dg~i~lwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--s~~g~-~l~s~~--~~~i~~wd~~~~~~~~ 362 (457)
+.-|..||.+-.... ...+..+.. ......+..|++ .++++ ||++++ +++..+||.....+.+
T Consensus 200 d~GIw~~da~p~~~~~~~~v~~~~~-----------g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 200 DEAIWKFSAEPDGGSNGTVIDRADG-----------RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp TTEEEEEECSTTSCSCCEEEEEBSS-----------SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred cceEEEEeCCcCCCCCceEEEEecC-----------CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 877777775421100 000011111 011235777777 45555 676665 3899999996336677
Q ss_pred eEeeecc
Q 012721 363 ATFKIHE 369 (457)
Q Consensus 363 ~~~~~~~ 369 (457)
..+....
T Consensus 269 g~f~Ig~ 275 (355)
T 3amr_A 269 ADFRITD 275 (355)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 7776433
No 309
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=96.24 E-value=0.63 Score=41.85 Aligned_cols=57 Identities=11% Similarity=-0.041 Sum_probs=37.1
Q ss_pred ceEEEc-------CCCcEEEEEeCCCcEEEEecCCCCcee---eEEecCCCcceeeeeccCCcceec
Q 012721 388 FECSVS-------GDGLHFATGSYSNLLRIFSHGVGSAGG---ITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 388 ~~~~~s-------~d~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
..++|. .+|.++++.-..+.|...++....... ..+.+....+..+++.||+.....
T Consensus 262 ~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~ 328 (354)
T 3a9g_A 262 SGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIS 328 (354)
T ss_dssp EEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEE
T ss_pred cceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEE
Confidence 466773 467777776667788888887532221 122233467889999999966555
No 310
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=96.15 E-value=0.7 Score=41.51 Aligned_cols=56 Identities=11% Similarity=-0.085 Sum_probs=35.2
Q ss_pred ceEEEcCCCcEEEEEeCCCcEEEEecCCCCce-----eeEEecCCCcceeeeeccCCcceec
Q 012721 388 FECSVSGDGLHFATGSYSNLLRIFSHGVGSAG-----GITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 388 ~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
..++| .+|.++++.-..+.|...++...... ...+-.....+..+++.||+.....
T Consensus 271 ~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~ 331 (352)
T 2ism_A 271 GNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVT 331 (352)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEE
T ss_pred cceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEE
Confidence 35666 46666666656677888877654221 1112123467899999999976665
No 311
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.82 E-value=0.73 Score=43.06 Aligned_cols=117 Identities=11% Similarity=0.097 Sum_probs=62.4
Q ss_pred CCeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecCCCccc--CCCCceEEEEEecC---CccEEEEEcc----
Q 012721 219 FNINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMKPSNMD--DLTEVITSAEFHPI---YCNLLAYSSS---- 288 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~i~~v~~~p~---~~~~l~~~~~---- 288 (457)
.....++|.|+|+++++- ..+.|++++.. .+....+..+.. .+. ........|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~-~g~~~~~~~~~~-~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPE-SGSVKTVFQVPE-IVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTT-TCCEEEEEECTT-CCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECC-CCcEeEEecCCc-cccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 356799999999988887 44578888765 333322222211 111 12456789999995 3144444332
Q ss_pred --------CCeEEEEEccCCe-eeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe
Q 012721 289 --------RGFVRLVDMRQSA-LCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD 346 (457)
Q Consensus 289 --------dg~i~lwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~ 346 (457)
...|.-|+..... .......++.. .+. -..| ....|+|.|||.+.++..
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~---~p~----~~~H--~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAG---LPS----SKDH--QSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEE---ECC----CSSC--CEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEc---CCC----CCCC--CCCeEeECCCCeEEEEEC
Confidence 2345555553321 00011112221 000 0123 468899999998777643
No 312
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.79 E-value=0.87 Score=39.65 Aligned_cols=146 Identities=10% Similarity=0.113 Sum_probs=70.0
Q ss_pred CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (457)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~ 297 (457)
++++++.| .+ ..+.+||+. ... ...+...+.....| ..+. -++ .+++.|+.+ ..+.+||+
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~-~~~-W~~~~~~p~~r~~~----~~~~--~~~-~iyv~GG~~~~~~~~~~~~~d~ 182 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPN-IDQ-WSMLGDMQTAREGA----GLVV--ASG-VIYCLGGYDGLNILNSVEKYDP 182 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETT-TTE-EEEEEECSSCCBSC----EEEE--ETT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcccCCCcccceEEEEcCC-CCe-EEECCCCCCCcccc----eEEE--ECC-EEEEECCCCCCcccceEEEEeC
Confidence 45666665 32 468888987 332 22221111111111 1222 255 778887754 45888998
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec------CcEEEEeccCCCCceeEeeecccc
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY------MNLKLWDIRMDSTPVATFKIHEHL 371 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~------~~i~~wd~~~~~~~~~~~~~~~~~ 371 (457)
.+.+-.. + ...+.. ......+.+ ++++++.|+. ..+.+||+.+ . ....+......
T Consensus 183 ~~~~W~~----~----~~~p~~-------r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~-~-~W~~~~~~p~~ 243 (301)
T 2vpj_A 183 HTGHWTN----V----TPMATK-------RSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRT-D-SWTTVTSMTTP 243 (301)
T ss_dssp TTTEEEE----E----CCCSSC-------CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-T-EEEEECCCSSC
T ss_pred CCCcEEe----C----CCCCcc-------cccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCC-C-cEEECCCCCCc
Confidence 8754221 0 001111 011122222 4666666531 5688899864 2 22222211111
Q ss_pred ccccccccCCCCccccceEEEcCCCcEEEEEeCC-----CcEEEEecCCC
Q 012721 372 RPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYS-----NLLRIFSHGVG 416 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~d-----g~i~iw~~~~~ 416 (457)
.. - ..++. -++++++.|+.+ ..+.+||+.+.
T Consensus 244 r~----------~---~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 244 RC----------Y---VGATV-LRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp CB----------S---CEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred cc----------c---eeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 00 0 12222 267777777765 35788888766
No 313
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.79 E-value=1 Score=40.43 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=22.1
Q ss_pred CceEEEEECCCCC-EEEEEeCCCeEEEEEe
Q 012721 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFET 61 (457)
Q Consensus 33 ~~V~~~~~s~~~~-~latg~~dg~i~iw~~ 61 (457)
...+.|+|.|+|+ +++ +...|.|++++.
T Consensus 18 ~~P~~i~~~pdG~~l~V-~e~~G~i~~~~~ 46 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLI-TLRGGELRHWQA 46 (353)
T ss_dssp SSEEEEEECSTTCCEEE-EETTTEEEEEET
T ss_pred CCcEEEEEcCCCCEEEE-EeCCceEEEEeC
Confidence 4568999999999 655 456788988874
No 314
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.63 E-value=0.61 Score=38.31 Aligned_cols=115 Identities=11% Similarity=-0.041 Sum_probs=64.2
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcc--cCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM--DDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
.+..++|+|+|.+.++ .++.++-.+.. ......-+.. ...+ .+-.. ..++.|.|+| .+.++ .||.|.-++-
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~-t~~~~~W~~s-~t~IG~~Gw~~-F~a~~fD~~G-~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPP-THDNDNWMGR-AKKIGNGGWNQ-FQFLFFDPNG-YLYAV--SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCC-CSTTCCHHHH-CEEEECSCGGG-CSEEEECTTS-CEEEE--ETTEEEEESC
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCC-CCCccccccc-ccEeccccccc-ceEEEECCCC-CEEEe--CCCEEEEeCC
Confidence 6779999999987777 77777766654 2111100000 0000 01111 4678999999 76666 6698887775
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEE
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKL 352 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~ 352 (457)
.+... ..+-. . ... .-..--..+..|.+.|+|.+.+.. ++.++-
T Consensus 115 P~~~~-----~~Wl~-~-a~~---vg~~gw~~~~~lff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 115 PQSDT-----DNWIA-R-ATE---VGSGGWSGFKFLFFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp CCSTT-----CCHHH-H-SEE---EECSSGGGEEEEEECTTSCEEEEE-TTEEEE
T ss_pred CcCCC-----Cceec-c-ccE---eccCCCCceEEEEECCCceEEEEe-CCcEEe
Confidence 43211 11110 0 000 000001357899999999888887 777543
No 315
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.30 E-value=1.5 Score=46.65 Aligned_cols=157 Identities=7% Similarity=0.067 Sum_probs=81.6
Q ss_pred cceEEEeccCccccccceeeccCC----CCCeeEEEeCCCCCEEEE-e-------CCCeEEEEEcCCCcceeeeeecCCC
Q 012721 194 MATKIANVGNSVHARCQKVYPHAH----DFNINSISNNSDCETFVS-A-------DDLRINLWNLEISDQCFNIVDMKPS 261 (457)
Q Consensus 194 ~~i~~~~~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~l~~-~-------~d~~i~iwd~~~~~~~~~~~~~~~~ 261 (457)
..|..|+++. ...+.+.+ ..| ...|.....+++.++++. | -.|.+.+|.++ .+. .+.
T Consensus 125 ~aVyHW~~~~--~s~P~k~f-dR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e-r~~-sQ~------ 193 (1630)
T 1xi4_A 125 NAVYHWSMEG--ESQPVKMF-DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD-RKV-SQP------ 193 (1630)
T ss_pred CeEEEeccCC--CCccHHHH-hcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc-ccc-chh------
Confidence 3466666643 22333333 223 345667777888888764 2 24788899887 332 222
Q ss_pred cccCCCCceEEEEEe--cCCccEEEEEcc---CCeEEEEEccCC-eeeccc-cccccccccccCcccceeccccceEEEE
Q 012721 262 NMDDLTEVITSAEFH--PIYCNLLAYSSS---RGFVRLVDMRQS-ALCDHS-ARILRDAAESHGSKSFFTEIIASISDIK 334 (457)
Q Consensus 262 ~~~~~~~~i~~v~~~--p~~~~~l~~~~~---dg~i~lwd~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 334 (457)
++||.+....+... +..+.+++.+.. .+.++|-++... ...... .+..+. ...| ..-..--.++.
T Consensus 194 -iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~-~~~~------~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 194 -IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDV-FFPP------EAQNDFPVAMQ 265 (1630)
T ss_pred -hhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccc-cCCc------ccccCcceEEE
Confidence 56776655444432 222134444332 368888888543 100000 001110 0001 01122334677
Q ss_pred EccCCCeEEEEec-CcEEEEeccCCCCceeEeeeccc
Q 012721 335 FANDGQHLLSRDY-MNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 335 ~s~~g~~l~s~~~-~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
.++.-..+..-+. |.|.+||+.+ +.++..-+....
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t-~~~i~~~ris~~ 301 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLET-GTCIYMNRISGE 301 (1630)
T ss_pred eccccCEEEEEecCceEEEEeccc-chhhhhccccCC
Confidence 7776666665554 9999999987 777665554443
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.29 E-value=0.15 Score=41.78 Aligned_cols=67 Identities=7% Similarity=-0.031 Sum_probs=36.6
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcc-cCCCCceEEEEEecCCccEEEEEccCCe
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNM-DDLTEVITSAEFHPIYCNLLAYSSSRGF 291 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~v~~~p~~~~~l~~~~~dg~ 291 (457)
..+..|.+.|+|.+.+.. |+.++-+..-... ...-+... ..+ ........-+.|.+++ .+.++. +|.
T Consensus 135 ~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~-~~~wl~~~-~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~ 202 (236)
T 1tl2_A 135 SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSN-QDNWLARA-TKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGK 202 (236)
T ss_dssp GGEEEEEECTTSCEEEEE-TTEEEEECCCSST-TCCHHHHC-EEEESSSGGGEEEEEECTTS-CEEEEE--TTE
T ss_pred CceEEEEECCCceEEEEe-CCcEEecCCCCCC-Cccccccc-ceeccCCcceEEEEEECCCC-cEEEEe--CCe
Confidence 357899999999998888 8875543222111 00000000 001 1233345557788888 666655 663
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=95.25 E-value=0.95 Score=40.66 Aligned_cols=78 Identities=8% Similarity=-0.010 Sum_probs=43.9
Q ss_pred CeeEEEeCCCCC-EEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC---CccEEEEEcc-------
Q 012721 220 NINSISNNSDCE-TFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI---YCNLLAYSSS------- 288 (457)
Q Consensus 220 ~v~~~~~~~~~~-~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~---~~~~l~~~~~------- 288 (457)
.-..++|.|+|+ ++++-..+.|++++.. +.....+.-.+............|+++|+ +..+.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~--g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG--KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT--TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC--CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 467899999999 6655577999999854 22211111000011122345689999995 3144444332
Q ss_pred CCeEEEEEccC
Q 012721 289 RGFVRLVDMRQ 299 (457)
Q Consensus 289 dg~i~lwd~~~ 299 (457)
...|..|++..
T Consensus 97 ~~~v~r~~~~~ 107 (353)
T 2g8s_A 97 GTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEECT
T ss_pred eeEEEEEEECC
Confidence 23566666543
No 318
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=95.12 E-value=2.7 Score=41.07 Aligned_cols=163 Identities=6% Similarity=-0.049 Sum_probs=94.3
Q ss_pred CCeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEE
Q 012721 219 FNINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVD 296 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd 296 (457)
..+..++|.+....|+.+ ..+.|+.++++ ......++... .........+..+++...+.++..+-+..+.|.+.+
T Consensus 340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~-g~~~~~v~~~~-~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~ 417 (628)
T 4a0p_A 340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQED-GSQGFTVVVSS-VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTR 417 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCSCEEEEC---------CCCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEecCCCeEEEEecCcceEEEEEcC-CCCceEEEEcc-cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEE
Confidence 457789998866666665 67889988887 33222222100 000012346789999988636667777888999999
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEE-EEec-C--cEEEEeccCCCCceeEeeeccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLL-SRDY-M--NLKLWDIRMDSTPVATFKIHEHLR 372 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~-s~~~-~--~i~~wd~~~~~~~~~~~~~~~~~~ 372 (457)
+.... . +++-. .......++++.|...+|. +-.. . .|...++ .+.....+....-.-
T Consensus 418 ~~G~~-~----~~l~~------------~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~--dG~~~~~l~~~~l~~ 478 (628)
T 4a0p_A 418 LDGRS-V----GVVLK------------GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAAL--DGTEREVLFFSGLSK 478 (628)
T ss_dssp TTSCE-E----EEEEE------------CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEET--TSCSCEEEECSSCSC
T ss_pred CCCCe-E----EEEEe------------CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeC--CCCCcEEEEeccCCC
Confidence 86532 1 11111 0124578999999544544 4322 2 4555554 355444443211110
Q ss_pred cccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCC
Q 012721 373 PKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~ 416 (457)
...+++.+++..|+.+.. .+.|...+++..
T Consensus 479 --------------P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~ 509 (628)
T 4a0p_A 479 --------------PIALALDSRLGKLFWADSDLRRIESSDLSGA 509 (628)
T ss_dssp --------------EEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred --------------ccEEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence 157899988777766654 578888888543
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.98 E-value=2.3 Score=39.60 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=23.7
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCC
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGG 64 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~ 64 (457)
-...+.|+|.|+|+++++-...+.|++++..++
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g 58 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESG 58 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCC
Confidence 346689999999998877554456877765444
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=94.25 E-value=2.5 Score=36.69 Aligned_cols=22 Identities=14% Similarity=0.373 Sum_probs=16.4
Q ss_pred CCcEEEEEeCCC-----cEEEEecCCC
Q 012721 395 DGLHFATGSYSN-----LLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~dg-----~i~iw~~~~~ 416 (457)
++.+++.|+.++ .+.+||+.+.
T Consensus 251 ~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 251 NGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCcCCCcccccEEEEcCCCC
Confidence 677777777654 4888998876
No 321
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.72 E-value=3.1 Score=36.24 Aligned_cols=134 Identities=13% Similarity=0.110 Sum_probs=71.0
Q ss_pred CCCCEEEEe---CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC--------------C
Q 012721 228 SDCETFVSA---DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR--------------G 290 (457)
Q Consensus 228 ~~~~~l~~~---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d--------------g 290 (457)
.++..|+.+ .++.|+..+.+ .....++. . . .+--+++++ ..|+.+... .
T Consensus 23 ~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~--------~--~--~~~~i~~~g-~~Iyy~~~~~~~~~~~~~~~~n~~ 88 (302)
T 3s25_A 23 ESDGEVFFSNTNDNGRLYAMNID-GSNIHKLS--------N--D--TAMYINADK-NYVYYVRNNNQKITSQTFFSYDRN 88 (302)
T ss_dssp EETTEEEEEEGGGTTEEEEEETT-SCSCEEEE--------E--E--EEEEEEECS-SEEEEEEECC------CCSSCCSE
T ss_pred EeCCEEEEEeCCCCceEEEEcCC-CCCCEEcc--------C--C--ceeeEEEcC-CEEEEEECCCCcccccceeccCCC
Confidence 456666654 36777777766 33333321 1 1 233457888 777666543 3
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEe---cCcEEEEeccCCCCceeEeee
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRD---YMNLKLWDIRMDSTPVATFKI 367 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~---~~~i~~wd~~~~~~~~~~~~~ 367 (457)
.|+..++...+.. .+.. . .+..|++++++|+-.+ ++.-.||-+...+.....+..
T Consensus 89 ~Iy~i~~dg~~~~-----~l~~---------------~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~ 146 (302)
T 3s25_A 89 SLCRIKRNGHGST-----VLDP---------------D--PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN 146 (302)
T ss_dssp EEEEEETTSCCCE-----EEEC---------------S--CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES
T ss_pred eEEEEeCCCCcce-----Eeec---------------C--CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC
Confidence 5666666654311 1111 1 1236778888888554 344444444333444444443
Q ss_pred ccccccccccccCCCCccccceEEEcCCCcEEEEEeC-CCcEEEEecCCC
Q 012721 368 HEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY-SNLLRIFSHGVG 416 (457)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~-dg~i~iw~~~~~ 416 (457)
+.. ..++++++.|+-.+. ...|++-++..+
T Consensus 147 ~~~-------------------~~~~~~g~~iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 147 HYL-------------------FTCNTSDRYFYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp SCC-------------------CCSEEETTEEEEECTTTCCEEEEETTTT
T ss_pred CCc-------------------eEeeEECCEEEEEeCCCceEEEEECCCC
Confidence 321 234567777765544 567777777655
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.50 E-value=3.5 Score=35.82 Aligned_cols=22 Identities=0% Similarity=0.196 Sum_probs=16.7
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCC
Q 012721 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~d-----g~i~iw~~~~~ 416 (457)
++.+++.|+.+ ..+.+||+.+.
T Consensus 247 ~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 247 GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 67788888754 46888998876
No 323
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=93.10 E-value=6.9 Score=38.12 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=88.1
Q ss_pred CeeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-cCCeEEEEE
Q 012721 220 NINSISNNSDCETFVSA--DDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-SRGFVRLVD 296 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-~dg~i~lwd 296 (457)
....+++.+.+..|+.+ ..+.|.+.+++ ... ..++ ....-.....|+++|..+.++.+-. ..+.|...+
T Consensus 393 ~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~-G~~-~~~l------~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~ 464 (619)
T 3s94_A 393 HPDGIAVDWVARNLYWTDTGTDRIEVTRLN-GTM-RKIL------ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAA 464 (619)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETT-SCS-CEEE------ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CcCceEEecccCcEEEEeCCCCcEEEEeCC-CCe-EEEE------EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEc
Confidence 45578887655555444 78899999988 332 2222 1223356789999997425544432 236677666
Q ss_pred ccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEec--CcEEEEeccCCCCceeEeeeccccccc
Q 012721 297 MRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDY--MNLKLWDIRMDSTPVATFKIHEHLRPK 374 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~~ 374 (457)
+...... .+... .-...+.|++++++..|..++. +.|..+++. +.....+......
T Consensus 465 ~dG~~~~----~l~~~-------------~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~d--G~~~~~~~~~~l~--- 522 (619)
T 3s94_A 465 LDGSDRV----VLVNT-------------SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTD--GTGRRVLVEDKIP--- 522 (619)
T ss_dssp TTSCSCE----EEECS-------------SCSCEEEEEEETTTTEEEEEETTTTEEEEEESS--SCCCEEEEECCCC---
T ss_pred cCCCccE----EEEeC-------------CCCCCeeeEEcccCCEEEEEECCCCEEEEEecC--CCceEEEeccCCC---
Confidence 6543211 11111 1245678999998777776653 788888885 3333333211110
Q ss_pred cccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 375 LCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 375 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.. ..++...+ .+..+-...+.|...+..++
T Consensus 523 --------~P---~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 523 --------HI---FGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp --------SS---CCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred --------Cc---EEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 00 35666544 33334444677888888887
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=92.70 E-value=4.9 Score=35.31 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=97.4
Q ss_pred CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-------cCCeEEEEEccCCee
Q 012721 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSAL 302 (457)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~lwd~~~~~~ 302 (457)
.+.|+.-.+..|+-|++.....+.++++.. ..+. ...|..-..+++. ++++..+ -.|.+.+|..+.+..
T Consensus 117 ~~~L~lVT~taVyHWs~~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~s 192 (365)
T 2xzh_A 117 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS 192 (365)
T ss_dssp SSEEEEEESSEEEEEESSTTCCCEEEEECC-GGGT--TCEEEEEEECTTS-CEEEEEEEEEETTEEEEEEEEEETTTTEE
T ss_pred CCeEEEEcCCcEEEEcccCCCCCceeeecc-hhcc--cceEEEEEECCCC-CEEEEEeEeccCCccceeEEEEeeccccc
Confidence 345555567889999998555666665432 1232 3567777778887 5544433 236677888766431
Q ss_pred eccccccccccccccCcccceeccccceEEEEEccC---CCeEEEEe---c-CcEEEEeccCC--CCceeEeeecccccc
Q 012721 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFAND---GQHLLSRD---Y-MNLKLWDIRMD--STPVATFKIHEHLRP 373 (457)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~---g~~l~s~~---~-~~i~~wd~~~~--~~~~~~~~~~~~~~~ 373 (457)
+.+ .+|......+.+..+ ..+++-+. . +++++-++..+ +.+....+.-+
T Consensus 193 -----Q~i-------------eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vd---- 250 (365)
T 2xzh_A 193 -----QPI-------------EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD---- 250 (365)
T ss_dssp -----EEE-------------CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEE----
T ss_pred -----cee-------------eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccce----
Confidence 222 333333322222211 12233222 1 68888888542 21111110000
Q ss_pred ccccccCCCCccc-cceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeee
Q 012721 374 KLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPIL 435 (457)
Q Consensus 374 ~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~ 435 (457)
-++.++...| -.++..|+.-..++.-+.-|.|++||+.++ .++..-+-...++...+.
T Consensus 251 ---i~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTg-t~i~~nrIS~d~iF~ta~ 309 (365)
T 2xzh_A 251 ---VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAP 309 (365)
T ss_dssp ---ECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEE
T ss_pred ---eeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccC-cEEEEeccCCCceEEecc
Confidence 0011110000 047888888888999999999999999999 777777666666654443
No 325
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=92.23 E-value=5.4 Score=34.69 Aligned_cols=64 Identities=13% Similarity=0.037 Sum_probs=33.2
Q ss_pred CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (457)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~ 297 (457)
++++++.| .+ ..+.+||.. .. ....+.. +.........+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~-~W~~~~~----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~ 191 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPE-RD-EWHLVAP----MLTRRIGVGVAVL--NR-LLYAVGGFDGTNRLNSAECYYP 191 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETT-TT-EEEECCC----CSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEET
T ss_pred CCEEEEEcCCCCCcccccEEEECCC-CC-eEeECCC----CCccccceEEEEE--CC-EEEEEeCCCCCCcCceEEEEeC
Confidence 45666665 32 468888887 33 2222211 1111111122222 55 777887754 45888998
Q ss_pred cCCe
Q 012721 298 RQSA 301 (457)
Q Consensus 298 ~~~~ 301 (457)
.+.+
T Consensus 192 ~~~~ 195 (308)
T 1zgk_A 192 ERNE 195 (308)
T ss_dssp TTTE
T ss_pred CCCe
Confidence 7754
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=92.09 E-value=14 Score=39.09 Aligned_cols=73 Identities=8% Similarity=0.022 Sum_probs=45.3
Q ss_pred CCeeEEEeCCC------CCEEEEe-C-CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEec-CCccEEEEEccC
Q 012721 219 FNINSISNNSD------CETFVSA-D-DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHP-IYCNLLAYSSSR 289 (457)
Q Consensus 219 ~~v~~~~~~~~------~~~l~~~-~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p-~~~~~l~~~~~d 289 (457)
..|.|+++.|. +.+++.| . |++++|+++. .-+.+.... +.. .....++.+.. .+..+|..|-.|
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~-~l~~~~~~~-----L~~-~~~p~si~l~~~~~~~~L~igl~d 626 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP-SFELLHKEM-----LGG-EIIPRSILMTTFESSHYLLCALGD 626 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT-TCCEEEEEE-----CCS-SCCEEEEEEEEETTEEEEEEEETT
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC-CCCeEEEEE-----CCC-CCCCcEEEEEEeCCCcEEEEEeCC
Confidence 36888888653 4688888 6 9999999998 433333221 111 12344444432 222678889999
Q ss_pred CeEEEEEcc
Q 012721 290 GFVRLVDMR 298 (457)
Q Consensus 290 g~i~lwd~~ 298 (457)
|.+.-+.+.
T Consensus 627 G~l~~~~~d 635 (1158)
T 3ei3_A 627 GALFYFGLN 635 (1158)
T ss_dssp SEEEEEEEC
T ss_pred CeEEEEEEc
Confidence 988666543
No 327
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=90.44 E-value=8.1 Score=33.41 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=16.2
Q ss_pred CCccEEEEEccC-----CeEEEEEccCCe
Q 012721 278 IYCNLLAYSSSR-----GFVRLVDMRQSA 301 (457)
Q Consensus 278 ~~~~~l~~~~~d-----g~i~lwd~~~~~ 301 (457)
++ .+++.|+.+ ..+.+||+.+.+
T Consensus 200 ~~-~i~v~GG~~~~~~~~~~~~yd~~~~~ 227 (306)
T 3ii7_A 200 KD-KIFAVGGQNGLGGLDNVEYYDIKLNE 227 (306)
T ss_dssp TT-EEEEECCEETTEEBCCEEEEETTTTE
T ss_pred CC-EEEEEeCCCCCCCCceEEEeeCCCCc
Confidence 55 777877753 458889988754
No 328
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=90.06 E-value=9.9 Score=33.80 Aligned_cols=55 Identities=9% Similarity=-0.019 Sum_probs=34.5
Q ss_pred eEEEcCCCcEEEEEeCCCcEEEEecCCCC---ceeeEEecCCCcceeeeeccCCcceec
Q 012721 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGS---AGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
.++|. ++..++..-..+.|....+..++ +....+.+....+..|...|||.....
T Consensus 267 G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~ 324 (347)
T 3das_A 267 GIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLV 324 (347)
T ss_dssp EEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEE
T ss_pred ceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEE
Confidence 56665 45555555555677767776542 123344555678999999999866544
No 329
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=89.94 E-value=18 Score=38.86 Aligned_cols=175 Identities=11% Similarity=0.026 Sum_probs=90.4
Q ss_pred CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-------cCCeEEEEEccCCee
Q 012721 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSAL 302 (457)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~lwd~~~~~~ 302 (457)
.+.|+.-.+..|+-|++.....+.++++.. ..+. ...|..-..+++. ++++..+ ..|.+.+|....+..
T Consensus 116 ~~~l~lVT~~aVyHW~~~~~s~P~k~fdR~-~~L~--~~QIinY~~d~~~-kW~~l~gi~~~~~~v~G~mQLyS~er~~s 191 (1630)
T 1xi4_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (1630)
T ss_pred CCeeEEEcCCeEEEeccCCCCccHHHHhcc-hhcc--cCeeEEeeeCCCC-CeEEEEeeccCCCcccceeeeeecccccc
Confidence 345555567899999997434444443221 1122 3556666777887 5544332 347788888766421
Q ss_pred eccccccccccccccCcccceeccccceEEEEEc--cC-CCeEEEEe----cCcEEEEeccCC--CCceeEeeecccccc
Q 012721 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFA--ND-GQHLLSRD----YMNLKLWDIRMD--STPVATFKIHEHLRP 373 (457)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s--~~-g~~l~s~~----~~~i~~wd~~~~--~~~~~~~~~~~~~~~ 373 (457)
+.++ ||.+....+... +. ...++-+. .+.+.|-++..+ +.+....+ ...+.
T Consensus 192 -----Q~ie-------------gha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk--~~~~~ 251 (1630)
T 1xi4_A 192 -----QPIE-------------GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKK--AVDVF 251 (1630)
T ss_pred -----hhhh-------------HhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccc--ccccc
Confidence 2233 333333222221 11 12222221 278888888542 11111100 00000
Q ss_pred ccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceee
Q 012721 374 KLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKP 433 (457)
Q Consensus 374 ~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~ 433 (457)
..+-..+|-. ..+..++.-..+..-+.-|.|+++|+.|+ ..+..-+-...+|...
T Consensus 252 -~~~~~~~Dfp---v~~~vs~k~g~iy~itk~G~~~~~d~~t~-~~i~~~ris~~~iF~~ 306 (1630)
T 1xi4_A 252 -FPPEAQNDFP---VAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVT 306 (1630)
T ss_pred -CCcccccCcc---eEEEeccccCEEEEEecCceEEEEecccc-hhhhhccccCCceEEe
Confidence 0000111111 46788888888888899999999999999 5555555444444333
No 330
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=88.63 E-value=15 Score=33.82 Aligned_cols=177 Identities=11% Similarity=0.056 Sum_probs=99.1
Q ss_pred CCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEc-------cCCeEEEEEccCCee
Q 012721 230 CETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSS-------SRGFVRLVDMRQSAL 302 (457)
Q Consensus 230 ~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~-------~dg~i~lwd~~~~~~ 302 (457)
.+.|+.-.+..|+-|++.....+.++++.. ..+. ...|..-..+++. ++++..+ -.|.+.+|..+.+..
T Consensus 116 ~~~l~lVT~taVyHWsi~~~s~P~kvFdR~-~~L~--~~QIInY~~d~~~-kW~~l~GI~~~~~~v~G~mQLYS~er~~s 191 (494)
T 1bpo_A 116 LNTVALVTDNAVYHWSMEGESQPVKMFDRH-SSLA--GCQIINYRTDAKQ-KWLLLTGISAQQNRVVGAMQLYSVDRKVS 191 (494)
T ss_dssp TTEEEEECSSEEEEEESSSSCCCEEEEECC-GGGT--TCEEEEEEECTTS-SEEEEEEEEEETTEEEEEEEEEESTTCCE
T ss_pred CCeEEEEcCCeeEEecccCCCCchhheecc-hhcc--cceEEEEEECCCC-CeEEEEeecccCCcccceEEEeecccccc
Confidence 345666677899999997555566665432 1232 3567777778888 5554333 236677887766421
Q ss_pred eccccccccccccccCcccceeccccceEEEEEccCC---CeEEEEe----cCcEEEEeccCC--CCceeEeeecccccc
Q 012721 303 CDHSARILRDAAESHGSKSFFTEIIASISDIKFANDG---QHLLSRD----YMNLKLWDIRMD--STPVATFKIHEHLRP 373 (457)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g---~~l~s~~----~~~i~~wd~~~~--~~~~~~~~~~~~~~~ 373 (457)
+. +.+|......+.+..+. .+++-+. .+.+.+.++... +.+....+.-+
T Consensus 192 -----Q~-------------ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vd---- 249 (494)
T 1bpo_A 192 -----QP-------------IEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVD---- 249 (494)
T ss_dssp -----EE-------------ECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEE----
T ss_pred -----ch-------------heeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeee----
Confidence 22 33444444333332111 2233232 278888888542 11111000000
Q ss_pred ccccccCCCCccc-cceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeec
Q 012721 374 KLCDLYNNDSIFD-KFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQ 436 (457)
Q Consensus 374 ~~~~~~~~~~~~~-v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~ 436 (457)
-++.++...| -.++..|+.-..++.-+.-|.|++||+.++ .++..-+-...++..-+.+
T Consensus 250 ---v~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg-t~i~~nrIs~~~iF~t~~~ 309 (494)
T 1bpo_A 250 ---VFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG-TCIYMNRISGETIFVTAPH 309 (494)
T ss_dssp ---CCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEEE
T ss_pred ---eeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc-eeeeeecccCCceEEeccc
Confidence 0111111100 047888988888999999999999999999 7777766666666544433
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=87.93 E-value=14 Score=32.76 Aligned_cols=28 Identities=4% Similarity=-0.073 Sum_probs=17.5
Q ss_pred EcCCCcEEEEEeCCC------cEEEEecCCCCce
Q 012721 392 VSGDGLHFATGSYSN------LLRIFSHGVGSAG 419 (457)
Q Consensus 392 ~s~d~~~l~s~~~dg------~i~iw~~~~~~~~ 419 (457)
..-++++++.|+.++ .|.++++++++..
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 334778888888653 3666788877433
No 332
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=87.70 E-value=15 Score=32.72 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=26.2
Q ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEEEecCCc
Q 012721 32 VDIVSAIEFDKTGDYLAVGDRGGRVILFETVGGK 65 (457)
Q Consensus 32 ~~~V~~~~~s~~~~~latg~~dg~i~iw~~~~~~ 65 (457)
-...+.|+|.|||.++++--..|.|++++..++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~ 64 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGR 64 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCc
Confidence 4577899999999988776558988888754443
No 333
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.57 E-value=13 Score=32.18 Aligned_cols=24 Identities=4% Similarity=-0.020 Sum_probs=16.6
Q ss_pred cCCccEEEEEcc-C-----CeEEEEEccCCe
Q 012721 277 PIYCNLLAYSSS-R-----GFVRLVDMRQSA 301 (457)
Q Consensus 277 p~~~~~l~~~~~-d-----g~i~lwd~~~~~ 301 (457)
-++ .+++.|+. + ..+.+||..+.+
T Consensus 147 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 147 HMD-LVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp ETT-EEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred ECC-EEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 355 77777776 2 468889988753
No 334
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=86.43 E-value=15 Score=31.69 Aligned_cols=64 Identities=9% Similarity=0.073 Sum_probs=34.4
Q ss_pred CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (457)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~ 297 (457)
++++++.| .+ ..+.+||+. .. ....+.. +.........+.+ ++ .+++.|+.+ ..+.+||+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~-~~-~W~~~~~----~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~ 238 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPE-RN-EWRMITA----MNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDV 238 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETT-TT-EEEECCC----CSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCC-CC-eEeeCCC----CCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeC
Confidence 55666665 33 568889987 33 2322211 1111111122222 55 788888764 56889998
Q ss_pred cCCe
Q 012721 298 RQSA 301 (457)
Q Consensus 298 ~~~~ 301 (457)
.+.+
T Consensus 239 ~~~~ 242 (308)
T 1zgk_A 239 ETET 242 (308)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8754
No 335
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.26 E-value=23 Score=33.64 Aligned_cols=71 Identities=10% Similarity=0.081 Sum_probs=48.8
Q ss_pred ceEEEEEccCCCeEEEEec--CcEEEEeccC-----CCCc-------eeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 329 SISDIKFANDGQHLLSRDY--MNLKLWDIRM-----DSTP-------VATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 329 ~v~~~~~s~~g~~l~s~~~--~~i~~wd~~~-----~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
....+..+|||+|++.++- .++.++|++. ..+. ........++ +..+|.+
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGP----------------lHt~Fd~ 387 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGP----------------LHTTFDG 387 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCE----------------EEEEECS
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcc----------------cEEEECC
Confidence 4457889999999998763 8999999863 1111 1111111111 5899999
Q ss_pred CCcEEEEEeCCCcEEEEecCC
Q 012721 395 DGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~ 415 (457)
+|.-..|---|..|.-|++..
T Consensus 388 ~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp SSEEEEEETTTTEEEEEEHHH
T ss_pred CCceEeeeeecceEEEEeccH
Confidence 995555556799999999875
No 336
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=85.77 E-value=16 Score=31.32 Aligned_cols=64 Identities=9% Similarity=0.030 Sum_probs=34.4
Q ss_pred CCCEEEEe-CC-----CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccC-----CeEEEEEc
Q 012721 229 DCETFVSA-DD-----LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSR-----GFVRLVDM 297 (457)
Q Consensus 229 ~~~~l~~~-~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~d-----g~i~lwd~ 297 (457)
++++++.| .+ ..+.+||+. .. ....+.. +.........+. -++ .+++.|+.+ ..+.+||+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~-~~-~W~~~~~----~p~~r~~~~~~~--~~~-~i~v~GG~~~~~~~~~v~~yd~ 229 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPH-TG-HWTNVTP----MATKRSGAGVAL--LND-HIYVVGGFDGTAHLSSVEAYNI 229 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETT-TT-EEEEECC----CSSCCBSCEEEE--ETT-EEEEECCBCSSSBCCCEEEEET
T ss_pred CCEEEEECCCCCCcccceEEEEeCC-CC-cEEeCCC----CCcccccceEEE--ECC-EEEEEeCCCCCcccceEEEEeC
Confidence 56666665 43 568889987 33 2322211 111111112222 245 788888764 46889999
Q ss_pred cCCe
Q 012721 298 RQSA 301 (457)
Q Consensus 298 ~~~~ 301 (457)
.+.+
T Consensus 230 ~~~~ 233 (301)
T 2vpj_A 230 RTDS 233 (301)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8754
No 337
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.72 E-value=25 Score=32.66 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=34.6
Q ss_pred CeeEEEeCCCCC--EEEEeCCCeEEEEEcCCCcceeeeeecCCCccc----CCCCceEEEEEecC
Q 012721 220 NINSISNNSDCE--TFVSADDLRINLWNLEISDQCFNIVDMKPSNMD----DLTEVITSAEFHPI 278 (457)
Q Consensus 220 ~v~~~~~~~~~~--~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~i~~v~~~p~ 278 (457)
.-..|+|.|++. +|++-..|.|++++.........+.++...... ........|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 456899999985 555558899999975421111111122111111 12456789999996
No 338
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=84.67 E-value=2.3 Score=40.22 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=52.6
Q ss_pred eeEEEeCCCCCEEEEe--CCCeEEEEEcCCCcceee--eeecCC---CcccCCCCceEEEEEecCCccEEEEEccCCeEE
Q 012721 221 INSISNNSDCETFVSA--DDLRINLWNLEISDQCFN--IVDMKP---SNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVR 293 (457)
Q Consensus 221 v~~~~~~~~~~~l~~~--~d~~i~iwd~~~~~~~~~--~~~~~~---~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~ 293 (457)
...+..+|||++++++ .+.++.++|++.-...+. +++.+. .+.+ -.-.....+|.++| +...+-..|..|.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCC-ceEeeeeecceEE
Confidence 3468899999999886 899999999983111100 000000 0111 22446788999999 8777888999999
Q ss_pred EEEccCC
Q 012721 294 LVDMRQS 300 (457)
Q Consensus 294 lwd~~~~ 300 (457)
-|++...
T Consensus 403 kWni~~a 409 (638)
T 3sbq_A 403 KWNMEEA 409 (638)
T ss_dssp EEEHHHH
T ss_pred EEeccHH
Confidence 9999763
No 339
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=83.48 E-value=22 Score=30.88 Aligned_cols=24 Identities=4% Similarity=-0.038 Sum_probs=16.4
Q ss_pred cCCccEEEEEcc------CCeEEEEEccCCe
Q 012721 277 PIYCNLLAYSSS------RGFVRLVDMRQSA 301 (457)
Q Consensus 277 p~~~~~l~~~~~------dg~i~lwd~~~~~ 301 (457)
.++ .+++.|+. -..+.+||+.+.+
T Consensus 157 ~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 157 HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp ETT-EEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred ECC-EEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 455 77777764 2458899988754
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.73 E-value=39 Score=33.35 Aligned_cols=155 Identities=10% Similarity=0.030 Sum_probs=75.8
Q ss_pred CCCEEEEe-CC------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCC--eEEEEEccC
Q 012721 229 DCETFVSA-DD------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRG--FVRLVDMRQ 299 (457)
Q Consensus 229 ~~~~l~~~-~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg--~i~lwd~~~ 299 (457)
++.+++.| .+ +.+.+||..+ . ....+.. +...... .+++...++ .+++.|+.++ .+.+||..+
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t-~-~W~~~~~----~p~~R~~-h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t 522 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKT-R-EWSMIKS----LSHTRFR-HSACSLPDG-NVLILGGVTEGPAMLLYNVTE 522 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTT-T-EEEECCC----CSBCCBS-CEEEECTTS-CEEEECCBCSSCSEEEEETTT
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCC-C-cEEECCC----CCCCccc-ceEEEEcCC-EEEEECCCCCCCCEEEEECCC
Confidence 56666665 32 3578888873 2 2322211 1111111 122232366 8888887654 689999988
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccC-CCeEEEEec--------CcEEEEeccCCCCc-----eeEe
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFAND-GQHLLSRDY--------MNLKLWDIRMDSTP-----VATF 365 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~-g~~l~s~~~--------~~i~~wd~~~~~~~-----~~~~ 365 (457)
..-... .. . ...+.. .....++.+..+ +++++.|+. +.+.+||+.+ ... ...+
T Consensus 523 ~~W~~~--~~--~-g~~p~~-------r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~-~~w~~~~~W~~~ 589 (695)
T 2zwa_A 523 EIFKDV--TP--K-DEFFQN-------SLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA-ENATEPITVIKK 589 (695)
T ss_dssp TEEEEC--CC--S-SGGGGS-------CCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT-TCSSCCEEEEEE
T ss_pred CceEEc--cC--C-CCCCCc-------ccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC-CccccceEEEEc
Confidence 542210 00 0 000100 112233555555 556666532 4588899875 331 2222
Q ss_pred eeccccccccccccCCCCccccceEEEcCCCcEEEEEeC--------CCcEEEEecCCC
Q 012721 366 KIHEHLRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSY--------SNLLRIFSHGVG 416 (457)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~--------dg~i~iw~~~~~ 416 (457)
.... ...... .+++...++.+++.|+. ...|.+||+.+.
T Consensus 590 ~~~p-~~~R~~-----------~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~ 636 (695)
T 2zwa_A 590 LQHP-LFQRYG-----------SQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSE 636 (695)
T ss_dssp EECG-GGCCBS-----------CEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTT
T ss_pred CCCC-CCCccc-----------ceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCC
Confidence 2210 000000 23444444777777774 346899999877
No 341
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=80.24 E-value=36 Score=35.13 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=29.6
Q ss_pred CceEEEEEecCCccEEEEEccCCeEEEEEccCCeee
Q 012721 268 EVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQSALC 303 (457)
Q Consensus 268 ~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~~~~~ 303 (457)
..+.+++..++. .++++-+.|+++|+|++.++++.
T Consensus 236 ~~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~~v 270 (950)
T 4gq2_M 236 NTIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQCV 270 (950)
T ss_dssp TCEEEEEEETTT-TEEEEEETTCEEEEEETTTTEEE
T ss_pred ceEEEEeecCCC-cEEEEEECCCEEEEEECCCCCeE
Confidence 356777777777 89999999999999999998765
No 342
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=80.17 E-value=50 Score=32.89 Aligned_cols=114 Identities=12% Similarity=0.054 Sum_probs=62.2
Q ss_pred CCeeEEEeCCCCCEEEE-eCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEc
Q 012721 219 FNINSISNNSDCETFVS-ADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDM 297 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~ 297 (457)
..|.++...++|.+.+. +..+-|..+|.. .++.... ... .+. ....+.++....+| .+.+ |+..| +..||.
T Consensus 472 ~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~-~~~~~~~-~~~--~~~-~~~~~~~i~~d~~g-~lWi-gt~~G-l~~~~~ 543 (758)
T 3ott_A 472 MFINQIIPDNEGNVWVLLYNNKGIDKINPR-TREVTKL-FAD--ELT-GEKSPNYLLCDEDG-LLWV-GFHGG-VMRINP 543 (758)
T ss_dssp SCEEEEEECTTSCEEEEETTCSSEEEEETT-TTEEEEE-CTT--TSC-GGGCEEEEEECTTS-CEEE-EETTE-EEEECC
T ss_pred ceeeeEEEcCCCCEEEEccCCCCcEEEeCC-CCceEEe-cCC--CcC-CCcccceEEECCCC-CEEE-EecCc-eEEEec
Confidence 35888888888887763 444568888887 3333322 110 011 13457888888887 5554 44444 788887
Q ss_pred cCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccC
Q 012721 298 RQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRM 357 (457)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~ 357 (457)
.+++.. .+.. .. + ....|.++... +|.+.++. ..-|..+|...
T Consensus 544 ~~~~~~-----~~~~-~g-------l--~~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~ 586 (758)
T 3ott_A 544 KDESQQ-----SISF-GS-------F--SNNEILSMTCV-KNSIWVST-TNGLWIIDRKT 586 (758)
T ss_dssp --CCCC-----BCCC-CC------------CCEEEEEEE-TTEEEEEE-SSCEEEEETTT
T ss_pred CCCceE-----Eecc-cC-------C--CccceEEEEEC-CCCEEEEC-CCCeEEEcCCC
Confidence 664321 1110 00 0 02457777664 66555544 44477788764
No 343
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=76.37 E-value=40 Score=29.73 Aligned_cols=22 Identities=23% Similarity=0.291 Sum_probs=17.7
Q ss_pred CEEEEEeCCCeEEEEEecCCcc
Q 012721 45 DYLAVGDRGGRVILFETVGGKN 66 (457)
Q Consensus 45 ~~latg~~dg~i~iw~~~~~~~ 66 (457)
.+++.++.||.|.-+|..+++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~ 32 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHI 32 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEE
T ss_pred CEEEEEeCCCeEEEEECCCCcE
Confidence 4678888899988888887764
No 344
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=71.21 E-value=58 Score=29.24 Aligned_cols=125 Identities=5% Similarity=0.064 Sum_probs=65.1
Q ss_pred CCeeEEEeC---CC----CCEEEEe--CCCeEEEEEcCCCcceeeeeec--CCC-----cccCC----CCceEEEEEecC
Q 012721 219 FNINSISNN---SD----CETFVSA--DDLRINLWNLEISDQCFNIVDM--KPS-----NMDDL----TEVITSAEFHPI 278 (457)
Q Consensus 219 ~~v~~~~~~---~~----~~~l~~~--~d~~i~iwd~~~~~~~~~~~~~--~~~-----~~~~~----~~~i~~v~~~p~ 278 (457)
..+..+.+. |+ +.++..+ ....|.++|+. .++..++... .+. ...+. ...+..|+++|+
T Consensus 152 S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~-~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~ 230 (381)
T 3q6k_A 152 TYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHK-KQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDR 230 (381)
T ss_dssp GGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETT-TTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCC
T ss_pred CccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECC-CCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCC
Confidence 345666665 22 3344444 67899999998 6666666421 010 00111 246788888887
Q ss_pred ----CccEEEEEccCCeEEEEEccCCeeeccccccccccccccCcccceeccc---cceEEEEEc-cCCCeEEEEec-Cc
Q 012721 279 ----YCNLLAYSSSRGFVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEII---ASISDIKFA-NDGQHLLSRDY-MN 349 (457)
Q Consensus 279 ----~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~s-~~g~~l~s~~~-~~ 349 (457)
+ +.|......+. ++|-+.+.-+.... ... .....+.. +.-..+++. .+|.++++--. +.
T Consensus 231 ~~~~~-~~LYf~plss~-~ly~V~T~~L~~~~---------~~~-~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a 298 (381)
T 3q6k_A 231 DSEGN-RPAYYLAGSAI-KVYSVNTKELKQKG---------GKL-NPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQ 298 (381)
T ss_dssp CTTSC-CEEEEEESSCS-EEEEEEHHHHSSTT---------CCC-CCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSE
T ss_pred cCCCC-eEEEEEECCCC-cEEEEEHHHhhCcc---------hhh-ceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCe
Confidence 5 66666655542 45555543211100 000 00011111 233456675 56765555544 89
Q ss_pred EEEEecc
Q 012721 350 LKLWDIR 356 (457)
Q Consensus 350 i~~wd~~ 356 (457)
|..|+..
T Consensus 299 I~~w~~~ 305 (381)
T 3q6k_A 299 VSCWNTQ 305 (381)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999985
No 345
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=68.20 E-value=56 Score=27.83 Aligned_cols=22 Identities=14% Similarity=0.385 Sum_probs=16.3
Q ss_pred CCcEEEEEeCC-----CcEEEEecCCC
Q 012721 395 DGLHFATGSYS-----NLLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~d-----g~i~iw~~~~~ 416 (457)
++.+++.|+.+ ..+.+||+.+.
T Consensus 204 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 204 NNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCC
Confidence 67777777764 36889998876
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=67.95 E-value=30 Score=30.52 Aligned_cols=29 Identities=14% Similarity=0.035 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCCcEEEEecCCCCceeeEEe
Q 012721 395 DGLHFATGSYSNLLRIFSHGVGSAGGITVE 424 (457)
Q Consensus 395 d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 424 (457)
++..+++|+.+|+++-.|+.+| +.+..+.
T Consensus 110 ~~g~Vy~Gs~~g~l~ald~~tG-~~~W~~~ 138 (339)
T 2be1_A 110 EDEKVYTGSMRTIMYTINMLNG-EIISAFG 138 (339)
T ss_dssp CCEEEEECEEEEEEEEEETTTC-CEEEEES
T ss_pred cCCEEEEEecCCEEEEEECCCC-cEEEEEe
Confidence 4567889999999999999999 4455443
No 347
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=67.15 E-value=1e+02 Score=30.56 Aligned_cols=161 Identities=9% Similarity=-0.001 Sum_probs=84.4
Q ss_pred CCeeEEEeCCCCCEEEEeCCCeEEEEEcCCC----ccee---eeeecCCCcccC-CCCceEEEEEecCCccEEEEEccCC
Q 012721 219 FNINSISNNSDCETFVSADDLRINLWNLEIS----DQCF---NIVDMKPSNMDD-LTEVITSAEFHPIYCNLLAYSSSRG 290 (457)
Q Consensus 219 ~~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~----~~~~---~~~~~~~~~~~~-~~~~i~~v~~~p~~~~~l~~~~~dg 290 (457)
..|.++...+++.+.+....+-|.++|.... .... ..+.. ..+ ....|.++...++| .+.+.++..+
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~i~~i~~d~~g-~lWi~~~t~~ 493 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSV----HNGLSGMFINQIIPDNEG-NVWVLLYNNK 493 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECG----GGTCSCSCEEEEEECTTS-CEEEEETTCS
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceeccccccc----ccccccceeeeEEEcCCC-CEEEEccCCC
Confidence 4578888877776555446677888886520 0111 11100 011 22458899988888 7665334344
Q ss_pred eEEEEEccCCeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeeccc
Q 012721 291 FVRLVDMRQSALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEH 370 (457)
Q Consensus 291 ~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~ 370 (457)
-|..+|..+++.. ..... . +. ....+.++....+|.+.++. .+-+..+|... .+ ...+.. .+
T Consensus 494 Gl~~~d~~~~~~~----~~~~~---~------~~-~~~~~~~i~~d~~g~lWigt-~~Gl~~~~~~~-~~-~~~~~~-~g 555 (758)
T 3ott_A 494 GIDKINPRTREVT----KLFAD---E------LT-GEKSPNYLLCDEDGLLWVGF-HGGVMRINPKD-ES-QQSISF-GS 555 (758)
T ss_dssp SEEEEETTTTEEE----EECTT---T------SC-GGGCEEEEEECTTSCEEEEE-TTEEEEECC---CC-CCBCCC-CC
T ss_pred CcEEEeCCCCceE----EecCC---C------cC-CCcccceEEECCCCCEEEEe-cCceEEEecCC-Cc-eEEecc-cC
Confidence 5788898775432 11000 0 00 02457788888888777654 44577888753 22 222211 11
Q ss_pred cccccccccCCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCC
Q 012721 371 LRPKLCDLYNNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVG 416 (457)
Q Consensus 371 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~ 416 (457)
.. .+. +.++... +|.+.+ ++.+| |..++..+.
T Consensus 556 l~--------~~~---i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~ 587 (758)
T 3ott_A 556 FS--------NNE---ILSMTCV-KNSIWV-STTNG-LWIIDRKTM 587 (758)
T ss_dssp -----------CC---EEEEEEE-TTEEEE-EESSC-EEEEETTTC
T ss_pred CC--------ccc---eEEEEEC-CCCEEE-ECCCC-eEEEcCCCc
Confidence 10 011 1355543 565444 44555 677887765
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=67.09 E-value=1.2e+02 Score=31.25 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=30.8
Q ss_pred CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
.+.+++..++..++++- .|+.+|+|++. .++++...++.
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~-t~~~v~t~dL~ 276 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELS 276 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETT-TTEEEEEEECC
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECC-CCCeEeeeccc
Confidence 46677777788888775 99999999999 67777776654
No 349
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=65.69 E-value=76 Score=28.48 Aligned_cols=155 Identities=8% Similarity=0.045 Sum_probs=84.9
Q ss_pred eEEEEEcCCCc--ceeeeeecCCCcccCCCCceEEEEEe---cC----CccEEEEE-ccCCeEEEEEccCCeeecccccc
Q 012721 240 RINLWNLEISD--QCFNIVDMKPSNMDDLTEVITSAEFH---PI----YCNLLAYS-SSRGFVRLVDMRQSALCDHSARI 309 (457)
Q Consensus 240 ~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~i~~v~~~---p~----~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~ 309 (457)
.|.+||+. .. +.++.+.++..... ....+..+.+. |. + .++..+ +..+.|.++|+.+++.. ++
T Consensus 124 kLv~~DL~-t~~~~li~~y~~p~~~~~-~~S~l~di~VD~~~~~~~c~~-~~aYItD~~~~gLIVydl~~~~sw----Rv 196 (381)
T 3q6k_A 124 AIVAYDLK-QPNYPEVVRYYFPTRLVE-KPTYFGGFAVDVANPKGDCSE-TFVYITNFLRGALFIYDHKKQDSW----NV 196 (381)
T ss_dssp EEEEEESS-STTCCEEEEEECCGGGCC-CGGGEEEEEEEESCTTTTSCS-EEEEEEETTTTEEEEEETTTTEEE----EE
T ss_pred eEEEEECC-CCCceeEEEEECCHHhcc-cCCccceEEEecccCCCCCCc-cEEEEEcCCCCcEEEEECCCCcEE----EE
Confidence 56677877 44 66666655433233 34567888888 22 2 343333 35678999999998654 32
Q ss_pred ccccccccCccc--ceecc----ccceEEEEEccC----CCeEEEEecCcEEEEeccC----CCC---ceeEeeeccccc
Q 012721 310 LRDAAESHGSKS--FFTEI----IASISDIKFAND----GQHLLSRDYMNLKLWDIRM----DST---PVATFKIHEHLR 372 (457)
Q Consensus 310 ~~~~~~~~~~~~--~~~~h----~~~v~~~~~s~~----g~~l~s~~~~~i~~wd~~~----~~~---~~~~~~~~~~~~ 372 (457)
... ...+.... ...+. ...+..|+++|+ ++.|.-..-..-++|.+.+ ... .+..+ +..+..
T Consensus 197 ~~~-~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~ 274 (381)
T 3q6k_A 197 THP-TFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELL-GNRGKY 274 (381)
T ss_dssp ECG-GGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEE-EECCTT
T ss_pred ccC-CCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEe-eecCCC
Confidence 221 11222111 11121 257899999998 7777755433334454432 011 11111 111110
Q ss_pred cccccccCCCCccccceEEEc-CCCcEEEEEeCCCcEEEEecCC
Q 012721 373 PKLCDLYNNDSIFDKFECSVS-GDGLHFATGSYSNLLRIFSHGV 415 (457)
Q Consensus 373 ~~~~~~~~~~~~~~v~~~~~s-~d~~~l~s~~~dg~i~iw~~~~ 415 (457)
. +. ..+++. .+|.++++--..+.|..|+..+
T Consensus 275 s--------~~----~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 275 N--------DA----IALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp C--------CE----EEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred C--------Cc----ceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 0 00 245675 6787777778889999999876
No 350
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=60.56 E-value=1.3e+02 Score=29.54 Aligned_cols=69 Identities=14% Similarity=0.163 Sum_probs=37.9
Q ss_pred CCCEEEEe-CCC--eEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecC-CccEEEEEcc--C-----CeEEEEEc
Q 012721 229 DCETFVSA-DDL--RINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPI-YCNLLAYSSS--R-----GFVRLVDM 297 (457)
Q Consensus 229 ~~~~l~~~-~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~-~~~~l~~~~~--d-----g~i~lwd~ 297 (457)
++.+++.| .++ .+.+||..+ . ....+... ..+........++.+..+ + .+++.|+. + +.+.+||+
T Consensus 500 ~~~iyv~GG~~~~~~v~~yd~~t-~-~W~~~~~~-g~~p~~r~~~~a~v~~~~~~-~iyv~GG~~~~~~~~~~~v~~yd~ 575 (695)
T 2zwa_A 500 DGNVLILGGVTEGPAMLLYNVTE-E-IFKDVTPK-DEFFQNSLVSAGLEFDPVSK-QGIILGGGFMDQTTVSDKAIIFKY 575 (695)
T ss_dssp TSCEEEECCBCSSCSEEEEETTT-T-EEEECCCS-SGGGGSCCBSCEEEEETTTT-EEEEECCBCTTSSCBCCEEEEEEE
T ss_pred CCEEEEECCCCCCCCEEEEECCC-C-ceEEccCC-CCCCCcccceeEEEEeCCCC-EEEEECCcCCCCCeeeCcEEEEEc
Confidence 67777776 433 789999873 2 33332110 001111122233455555 5 78888875 2 45889998
Q ss_pred cCCe
Q 012721 298 RQSA 301 (457)
Q Consensus 298 ~~~~ 301 (457)
.+..
T Consensus 576 ~~~~ 579 (695)
T 2zwa_A 576 DAEN 579 (695)
T ss_dssp CTTC
T ss_pred cCCc
Confidence 8764
No 351
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=59.69 E-value=36 Score=33.47 Aligned_cols=38 Identities=16% Similarity=0.302 Sum_probs=31.0
Q ss_pred CcEEEEEEEecCCCCEEEEeeCCCeEEEEEecccceeEEEee
Q 012721 114 EKINRVRWCAAPNGSMFILSTNDKTIKLWKVRDQKVKKIKEM 155 (457)
Q Consensus 114 ~~V~~v~~~~s~~~~~l~s~s~d~~i~vw~~~~~~~~~~~~~ 155 (457)
..|.++.+ +..++++-+.|+++|+|++.++.+......
T Consensus 222 ~~Is~~~~----~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 222 SVISCKLF----HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp CEEEEEEE----TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred ceEEEecc----CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 44666655 356999999999999999999998877766
No 352
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=57.66 E-value=91 Score=26.70 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=16.3
Q ss_pred CCcEEEEEeCCC-----cEEEEecCCC
Q 012721 395 DGLHFATGSYSN-----LLRIFSHGVG 416 (457)
Q Consensus 395 d~~~l~s~~~dg-----~i~iw~~~~~ 416 (457)
++++++.|+.++ .+.+||+.+.
T Consensus 196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 196 DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCEEEEEeccCCCCccceEEEEECCCC
Confidence 677777777654 4888898876
No 353
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=49.10 E-value=1.6e+02 Score=27.15 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=22.4
Q ss_pred CceEEEEECCCCC-EEEEEeCCCeEEEEEec
Q 012721 33 DIVSAIEFDKTGD-YLAVGDRGGRVILFETV 62 (457)
Q Consensus 33 ~~V~~~~~s~~~~-~latg~~dg~i~iw~~~ 62 (457)
...+.|+|.|||. .|+++...|.|++++.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4568999999996 34445678999998643
No 354
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.12 E-value=19 Score=38.09 Aligned_cols=33 Identities=9% Similarity=-0.111 Sum_probs=27.9
Q ss_pred eEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeE
Q 012721 389 ECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGIT 422 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~ 422 (457)
+++..++..++++-+.|++++||++.++ .++.+
T Consensus 242 s~~~~~~~~~lftL~~D~~LRiWsl~t~-~~v~t 274 (1139)
T 4fhn_B 242 SMIFLSTYNVLVMLSLDYKLKVLDLSTN-QCVET 274 (1139)
T ss_dssp CCEEETTTTEEEEEBTTCEEEEEETTTT-EEEEE
T ss_pred EeeccCCccEEEEEeCCCEEEEEECCCC-CeEEe
Confidence 5667788899999999999999999998 55444
No 355
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.06 E-value=96 Score=32.75 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=29.8
Q ss_pred CeeEEEeCCCCCEEEEe-CCCeEEEEEcCCCcceeeeeecC
Q 012721 220 NINSISNNSDCETFVSA-DDLRINLWNLEISDQCFNIVDMK 259 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~d~~i~iwd~~~~~~~~~~~~~~ 259 (457)
.+.+++..++..++++- .|+.+|+|++. .++++...++.
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~-t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLS-TNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETT-TTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECC-CCCeEEeechh
Confidence 34455666777787775 99999999999 67788777654
No 356
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=38.18 E-value=1.4e+02 Score=28.65 Aligned_cols=61 Identities=15% Similarity=-0.010 Sum_probs=35.9
Q ss_pred cceEEEEEccCCCeEEEEec-------------CcEEEEeccCCCCceeEeeeccccccccccccCCCCccccceEEEcC
Q 012721 328 ASISDIKFANDGQHLLSRDY-------------MNLKLWDIRMDSTPVATFKIHEHLRPKLCDLYNNDSIFDKFECSVSG 394 (457)
Q Consensus 328 ~~v~~~~~s~~g~~l~s~~~-------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 394 (457)
.....|.|+++|.+.++.+. +.+..++..+ +++...+...... ..+.++|+|
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~t-Gel~~fl~~P~~a--------------EpnGiafSP 540 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPAT-GEIRRFMVGPIGC--------------EVTGISFSP 540 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTT-CCEEEEEECCTTC--------------EEEEEEECT
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCC-CeEEEEEeCCCCc--------------cccCCEECC
Confidence 45678999999987774321 1344444432 4433333322211 116899999
Q ss_pred CCcEEEEEe
Q 012721 395 DGLHFATGS 403 (457)
Q Consensus 395 d~~~l~s~~ 403 (457)
|++.|+.+-
T Consensus 541 D~ktLfV~v 549 (592)
T 4a9v_A 541 DQKTLFVGI 549 (592)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999887654
No 357
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=37.90 E-value=34 Score=33.64 Aligned_cols=31 Identities=6% Similarity=-0.211 Sum_probs=24.9
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCCceeeEEec
Q 012721 394 GDGLHFATGSYSNLLRIFSHGVGSAGGITVEA 425 (457)
Q Consensus 394 ~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 425 (457)
.+..++++-+.|.++|+|++.++ ....+..-
T Consensus 229 ~~~~fLftL~~Dh~LRiWsL~t~-~lv~t~DL 259 (729)
T 3f7f_A 229 FHERYLIVLTQNCHLKIWDLTSF-TLIQDYDM 259 (729)
T ss_dssp ETTTEEEEEETTCEEEEEETTTT-EEEEEEET
T ss_pred cCCcEEEEEEcCCeEEEEEcCCC-ceEEeecc
Confidence 35789999999999999999999 55554433
No 358
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=32.22 E-value=2.3e+02 Score=23.91 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=84.7
Q ss_pred CeeEEEeCCCCCEEEEeCCCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEEccCCeEEEEEccC
Q 012721 220 NINSISNNSDCETFVSADDLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYSSSRGFVRLVDMRQ 299 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~~~dg~i~lwd~~~ 299 (457)
.|..++...+. .++.. ||.|+.|-....++.-. .......|..++..... .++. . ||.|..|-...
T Consensus 103 ~v~~ia~G~~h-s~al~-~G~v~~wG~n~~gqlg~--------~~~~~~~i~~i~~G~~~--~~~l-~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 103 GVDAIAAGAWA-SYALK-DGKVIAWGDDSDGQTTV--------PAEAQSGVTALDGGVYT--ALAV-K-NGGVIAWGDNY 168 (282)
T ss_dssp SEEEEEEETTE-EEEEE-TTEEEEEECCTTSTTSC--------CGGGGSSEEEEEECSSE--EEEE-E-TTEEEEEECCT
T ss_pred CeEEEECcCCE-EEEEe-CCeEEEecCCCCCcCCC--------CccCCCCeEEEEcccCE--EEEE-E-CCEEEEecCCC
Confidence 46666654333 33334 89999998764443211 01122457777765543 3333 3 79999997654
Q ss_pred CeeeccccccccccccccCcccceeccccceEEEEEccCCCeEEEEecCcEEEEeccCCCCceeEeeecccccccccccc
Q 012721 300 SALCDHSARILRDAAESHGSKSFFTEIIASISDIKFANDGQHLLSRDYMNLKLWDIRMDSTPVATFKIHEHLRPKLCDLY 379 (457)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s~~~~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (457)
......+.. -...|..++...+. .++. .+|.|+.|-....+++-.......
T Consensus 169 ~gqlg~p~~-----------------~~~~v~~i~~G~~h-s~al-~~G~v~~wG~n~~gqlg~p~~~~~---------- 219 (282)
T 3qhy_B 169 FGQTTVPAE-----------------AQSGVDDVAGGIFH-SLAL-KDGKVIAWGDNRYKQTTVPTEALS---------- 219 (282)
T ss_dssp TSTTSCCGG-----------------GGSSEEEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGGS----------
T ss_pred CCCCCCcee-----------------cCCCeEEEEecCCE-EEEE-ECCeEEEEECCCCCCCCCCcccCC----------
Confidence 322110000 02356666654433 3334 579999997654333311100000
Q ss_pred CCCCccccceEEEcCCCcEEEEEeCCCcEEEEecCCCCceeeEEecCCCcceeeeeccCCcceec
Q 012721 380 NNDSIFDKFECSVSGDGLHFATGSYSNLLRIFSHGVGSAGGITVEAGKNENRKPILQAAPRARRS 444 (457)
Q Consensus 380 ~~~~~~~v~~~~~s~d~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~~~ 444 (457)
.|..++-..+...+++ ||.|+.|-.....+... ...|..++..+.-..++.
T Consensus 220 ------~v~~i~~G~~h~~al~---~g~v~~wG~n~~gq~~v-----~~~v~~iaaG~~h~~al~ 270 (282)
T 3qhy_B 220 ------GVSAIASGEWYSLALK---NGKVIAWGSSRTAPSSV-----QSGVSSIEAGPNAAYALK 270 (282)
T ss_dssp ------SCCEEEECSSCEEEEE---TTEEEEESTTCCCCGGG-----SSCEEEEEECSSCEEEEE
T ss_pred ------CceEEEcCCCEEEEEE---CCEEEEecCCCCccccC-----CCCcEEEEECcCeEEEEe
Confidence 1235554444333333 89999998765422221 335666666555444433
No 359
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=29.41 E-value=2.1e+02 Score=27.49 Aligned_cols=57 Identities=11% Similarity=0.093 Sum_probs=35.5
Q ss_pred eEEEeCCCCCEEEEeC-C------------CeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE
Q 012721 222 NSISNNSDCETFVSAD-D------------LRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (457)
Q Consensus 222 ~~~~~~~~~~~l~~~~-d------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~ 286 (457)
--|+|+|.|.+++.-+ + +.+.+.+.. .++..+++.. .....++.++|+||+ +.|.+.
T Consensus 479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~-~g~~~rf~~~------P~gaE~TG~~fspDg-~tlfvn 548 (592)
T 3zwu_A 479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFMVG------PIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTT-TCCEEEEEEC------CTTCEEEEEEECTTS-SEEEEE
T ss_pred cceEECCCCCEEEEecCCCcccccccccccceEEEEeCC-CCeEEEEEeC------CCCccCcCeeECCCC-CEEEEE
Confidence 3588999998665532 1 235555555 4555544321 234789999999998 655544
No 360
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=25.71 E-value=1.5e+02 Score=28.53 Aligned_cols=55 Identities=7% Similarity=-0.098 Sum_probs=36.3
Q ss_pred eEEEcCCCcEEEEEeCC------------CcEEEEecCCCCceeeEEecC-CCcceeeeeccCCcceec
Q 012721 389 ECSVSGDGLHFATGSYS------------NLLRIFSHGVGSAGGITVEAG-KNENRKPILQAAPRARRS 444 (457)
Q Consensus 389 ~~~~s~d~~~l~s~~~d------------g~i~iw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~~~ 444 (457)
.++|+|+|.+++.-..+ ..+.+.+..++ +....+.+. .+.++.+.|+||+...-.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g-~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATG-EIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTC-CEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCC-eEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 68999999977654432 23555566667 444444444 568999999999865433
No 361
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=24.99 E-value=3.3e+02 Score=23.46 Aligned_cols=12 Identities=17% Similarity=0.157 Sum_probs=9.2
Q ss_pred CeEEEEEccCCe
Q 012721 290 GFVRLVDMRQSA 301 (457)
Q Consensus 290 g~i~lwd~~~~~ 301 (457)
..+.+||..+.+
T Consensus 168 ~~v~~yd~~~~~ 179 (357)
T 2uvk_A 168 KFLLSFDPSTQQ 179 (357)
T ss_dssp CEEEEEETTTTE
T ss_pred ccEEEEeCCCCc
Confidence 578899988754
No 362
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=22.77 E-value=4.7e+02 Score=25.00 Aligned_cols=59 Identities=7% Similarity=0.041 Sum_probs=36.7
Q ss_pred CeeEEEeCCCCCEEEEe-C------------CCeEEEEEcCCCcceeeeeecCCCcccCCCCceEEEEEecCCccEEEEE
Q 012721 220 NINSISNNSDCETFVSA-D------------DLRINLWNLEISDQCFNIVDMKPSNMDDLTEVITSAEFHPIYCNLLAYS 286 (457)
Q Consensus 220 ~v~~~~~~~~~~~l~~~-~------------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~p~~~~~l~~~ 286 (457)
....|.|.++|.+.+.. . .+.+..++.. .++...++.. .....++.++|+||+ +.|.++
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~-tGel~~fl~~------P~~aEpnGiafSPD~-ktLfV~ 548 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPA-TGEIRRFMVG------PIGCEVTGISFSPDQ-KTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTT-TCCEEEEEEC------CTTCEEEEEEECTTS-SEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCC-CCeEEEEEeC------CCCccccCCEECCCC-CEEEEE
Confidence 34578999999887743 1 1256666665 4544444211 123568999999999 665554
Done!