BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012722
         (457 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
 pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
           Adohcy
 pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
           Adomet
          Length = 1330

 Score = 32.0 bits (71), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 244 SAYNFVRNFTKSTVSP----VIEYDRNTLIRHAL-----AEKYDEIEDCFSVPHLLASCI 294
           + Y  + N  ++TV P    V  +  ++L+RHA       E YDE +D    P  L+ C+
Sbjct: 238 AVYEDLINKIETTVPPSTINVNRFTEDSLLRHAQFVVSQVESYDEAKDDDETPIFLSPCM 297

Query: 295 FALIQ 299
            ALI 
Sbjct: 298 RALIH 302


>pdb|2C5J|A Chain A, N-Terminal Domain Of Tlg1, Domain-Swapped Dimer
 pdb|2C5J|B Chain B, N-Terminal Domain Of Tlg1, Domain-Swapped Dimer
 pdb|2C5K|T Chain T, N-Terminal Domain Of Tlg1 Complexed With N-Terminus Of
           Vps51
          Length = 95

 Score = 31.2 bits (69), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 141 MNSTKEQCVEIQDQTCSNNTKGRDDEAE---DVLREFMQRRVLD-----TVYEEEERNSC 192
           +  TKEQ   I +    +NT G DD+ E   D+L++ ++  ++D      V + +E    
Sbjct: 12  VKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKD-VEETIVDLDRSIIVMKRDENEDV 70

Query: 193 ASPDSTIKDSDQQL 206
           +  ++ +K+  QQL
Sbjct: 71  SGREAQVKNIKQQL 84


>pdb|2C5I|T Chain T, N-Terminal Domain Of Tlg1 Complexed With N-Terminus Of
           Vps51 In Distorted Conformation
          Length = 101

 Score = 31.2 bits (69), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 9/74 (12%)

Query: 141 MNSTKEQCVEIQDQTCSNNTKGRDDEAE---DVLREFMQRRVLD-----TVYEEEERNSC 192
           +  TKEQ   I +    +NT G DD+ E   D+L++ ++  ++D      V + +E    
Sbjct: 12  VKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKD-VEETIVDLDRSIIVXKRDENEDV 70

Query: 193 ASPDSTIKDSDQQL 206
           +  ++ +K+  QQL
Sbjct: 71  SGREAQVKNIKQQL 84


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,753,773
Number of Sequences: 62578
Number of extensions: 485941
Number of successful extensions: 1430
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1430
Number of HSP's gapped (non-prelim): 5
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)