Query 012722
Match_columns 457
No_of_seqs 203 out of 1086
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 14:58:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012722.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012722hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b19_A PEPA1; toxin, toxin apo 22.7 36 0.0012 22.4 1.4 14 34-47 7-20 (30)
2 3arc_J Photosystem II reaction 10.7 1.8E+02 0.0062 20.2 2.6 24 334-357 6-32 (40)
3 2w2e_A AQY1, aquaporin, aquapo 9.5 1.4E+02 0.0048 28.8 2.4 30 34-63 246-275 (279)
4 2k1a_A Integrin alpha-IIB; sin 8.7 3.2E+02 0.011 19.0 3.3 15 332-346 4-18 (42)
5 3l1l_A Arginine/agmatine antip 8.5 2.5E+02 0.0086 27.4 3.9 33 51-84 370-402 (445)
6 2knc_A Integrin alpha-IIB; tra 7.9 2.5E+02 0.0087 20.7 2.7 16 331-346 5-20 (54)
7 3dww_A Prostaglandin E synthas 6.0 1.3E+03 0.043 20.0 6.9 31 351-382 109-140 (158)
8 2gsm_B Cytochrome C oxidase su 5.8 4.9E+02 0.017 24.8 4.2 9 35-43 22-30 (262)
9 2ls4_A High affinity copper up 7.4 1.4E+02 0.0048 18.9 0.0 20 339-358 4-23 (26)
10 3tj6_B Protein PS 120; cytoske 5.2 3.3E+02 0.011 16.7 1.6 14 300-313 6-19 (23)
No 1
>4b19_A PEPA1; toxin, toxin apoptotic peptide, apoptosis; NMR {Staphylococcus aureus}
Probab=22.68 E-value=36 Score=22.38 Aligned_cols=14 Identities=21% Similarity=0.541 Sum_probs=11.2
Q ss_pred ehhhhHHHHHHHHH
Q 012722 34 TVAPLFACMCACFL 47 (457)
Q Consensus 34 ~iSP~lSG~~s~~l 47 (457)
+++|++||++=+++
T Consensus 7 iia~visGcivalF 20 (30)
T 4b19_A 7 IIAPVISGCAIAFF 20 (30)
T ss_dssp STTTTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 57899999876654
No 2
>3arc_J Photosystem II reaction center protein J; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_J* 3a0b_J* 3a0h_J* 2axt_J* 3bz1_J* 3bz2_J* 3kzi_J* 3prq_J* 3prr_J*
Probab=10.74 E-value=1.8e+02 Score=20.23 Aligned_cols=24 Identities=21% Similarity=0.681 Sum_probs=14.0
Q ss_pred cchhHHHH-HHHHHHH--HHHHhhccc
Q 012722 334 IDVSWWFR-ALGGLGA--VMGFILCGW 357 (457)
Q Consensus 334 ~~~p~wil-~~g~~~i--~~G~~~~G~ 357 (457)
..+|.|+. ..+|++. .+|+++||-
T Consensus 6 GRiPLWlvgtv~G~~vi~~~giFfyGs 32 (40)
T 3arc_J 6 GRIPLWIVATVAGMGVIVIVGLFFYGA 32 (40)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccEEeeeeehhhhhhheeeEEEeec
Confidence 36899987 3333332 357777763
No 3
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=9.54 E-value=1.4e+02 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=22.1
Q ss_pred ehhhhHHHHHHHHHHHHhhhhhcccCCHHH
Q 012722 34 TVAPLFACMCACFLFILLKVLILRHKNARE 63 (457)
Q Consensus 34 ~iSP~lSG~~s~~lF~~ir~~VL~r~np~~ 63 (457)
.+.|+++|++++++|-+++..=....||-+
T Consensus 246 ~vgPiiGa~la~~ly~~l~~~~~~~~~p~~ 275 (279)
T 2w2e_A 246 WLGPILGAFLAYSIWQMWKWLNYQTTNPGQ 275 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTCSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCcCCCCC
Confidence 579999999999999887765555555544
No 4
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=8.69 E-value=3.2e+02 Score=19.04 Aligned_cols=15 Identities=20% Similarity=0.570 Sum_probs=10.3
Q ss_pred CCcchhHHHHHHHHH
Q 012722 332 DSIDVSWWFRALGGL 346 (457)
Q Consensus 332 ~~~~~p~wil~~g~~ 346 (457)
...++|+|+.+.+.+
T Consensus 4 ~~~~vp~wiIi~s~l 18 (42)
T 2k1a_A 4 EERAIPIWWVLVGVL 18 (42)
T ss_dssp SCCCCCHHHHHHHHH
T ss_pred CcCCcchHHHHHHHH
Confidence 345789998866554
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=8.48 E-value=2.5e+02 Score=27.42 Aligned_cols=33 Identities=9% Similarity=-0.016 Sum_probs=16.2
Q ss_pred hhhhhcccCCHHHHHHHHhhHHHHHHHhhhhhhe
Q 012722 51 LKVLILRHKNARERILIFFPVDYGLSAGLLCLFL 84 (457)
Q Consensus 51 ir~~VL~r~np~~~al~~lPi~~~~t~~in~f~I 84 (457)
+-..++|+++| ++-....|++..+.+....+.+
T Consensus 370 ~~~~~~r~~~~-~~r~~~~~~~~~~~~~~~~~~~ 402 (445)
T 3l1l_A 370 AALLLLGHGHF-GKARPAYLAVTTIAFLYCIWAV 402 (445)
T ss_dssp HHHHHHHSSSS-GGGCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCc-ccccchhHHHHHHHHHHHHHHH
Confidence 34456777777 4322344444444444444443
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=7.92 E-value=2.5e+02 Score=20.67 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=10.7
Q ss_pred cCCcchhHHHHHHHHH
Q 012722 331 VDSIDVSWWFRALGGL 346 (457)
Q Consensus 331 ~~~~~~p~wil~~g~~ 346 (457)
.....+|+|+.+.+.+
T Consensus 5 ~~~~~vp~wiIi~svl 20 (54)
T 2knc_A 5 SEERAIPIWWVLVGVL 20 (54)
T ss_dssp CTTTTCCHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHH
Confidence 3445689998866554
No 7
>3dww_A Prostaglandin E synthase; membrane protein, four helix bundle, isomerase, membrane, transmembrane; HET: GSH; 3.50A {Homo sapiens}
Probab=6.03 E-value=1.3e+03 Score=19.97 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=18.5
Q ss_pred HHhhccchhHhhhccCcccc-CCcchHHHHHHH
Q 012722 351 GFILCGWKLTQCLGGKLTYM-SNSRGLASQLST 382 (457)
Q Consensus 351 G~~~~G~rVi~TlG~~it~l-~p~~gf~ael~a 382 (457)
|..+..-||..+++. ++.. .|.|+...-++-
T Consensus 109 ~~~fv~~Rilh~~~Y-~~~~p~~~Rsl~~~vg~ 140 (158)
T 3dww_A 109 FLVFLVGRVAHTVAY-LGKLRAPIRSVTYTLAQ 140 (158)
T ss_dssp HHHHHHHHHHHHHHT-TSSCCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HcCCCccHHHHHHHHHH
Confidence 333444588888887 4443 677775554443
No 8
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=5.75 E-value=4.9e+02 Score=24.75 Aligned_cols=9 Identities=11% Similarity=0.287 Sum_probs=3.9
Q ss_pred hhhhHHHHH
Q 012722 35 VAPLFACMC 43 (457)
Q Consensus 35 iSP~lSG~~ 43 (457)
.||....+.
T Consensus 22 asp~a~~i~ 30 (262)
T 2gsm_B 22 ASPVATQIH 30 (262)
T ss_dssp CSHHHHHHH
T ss_pred CCHHHHHHH
Confidence 344444443
No 9
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=7.36 E-value=1.4e+02 Score=18.87 Aligned_cols=20 Identities=30% Similarity=0.612 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhhccch
Q 012722 339 WFRALGGLGAVMGFILCGWK 358 (457)
Q Consensus 339 wil~~g~~~i~~G~~~~G~r 358 (457)
|+++...+|..+|-+++||+
T Consensus 4 ~l~iavvlGa~~Gyf~F~~~ 23 (26)
T 2ls4_A 4 YLCIAVAAGAGTGYFLFSWK 23 (26)
Confidence 67777777888888888876
No 10
>3tj6_B Protein PS 120; cytoskeleton, epidemic typhus, SCA4, spotted fever, alpha-HE bundle domain, protein-protein interactions, cell adhesion; 2.76A {Rickettsia rickettsii}
Probab=5.16 E-value=3.3e+02 Score=16.71 Aligned_cols=14 Identities=21% Similarity=0.266 Sum_probs=10.7
Q ss_pred hhhhhhhHHHHHHH
Q 012722 300 SVSEIAAIVSPYGA 313 (457)
Q Consensus 300 GaNDvanaigp~~~ 313 (457)
-++|++|+.+++.-
T Consensus 6 kaqdv~~AL~nvi~ 19 (23)
T 3tj6_B 6 KAREVINAVNPVIE 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 37899999987643
Done!