Query 012722
Match_columns 457
No_of_seqs 203 out of 1086
Neff 5.6
Searched_HMMs 13730
Date Mon Mar 25 14:58:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012722.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012722hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 21.0 44 0.0032 25.2 4.1 57 31-87 32-96 (100)
2 d2axtj1 f.23.32.1 (J:7-40) Pho 19.1 30 0.0022 21.6 2.1 22 336-357 2-26 (34)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 18.7 48 0.0035 25.4 3.9 57 31-87 38-102 (107)
4 d1ppjc2 f.21.1.2 (C:15-260) Mi 7.9 1.7E+02 0.012 25.4 4.6 67 48-123 159-235 (246)
5 d1q90l_ f.23.24.1 (L:) PetL su 6.1 88 0.0064 18.7 1.0 22 340-361 9-30 (32)
6 d2e74d2 f.23.12.1 (D:12-45) IS 5.6 1.8E+02 0.013 17.6 2.3 17 39-55 16-32 (34)
7 d1rh5b_ f.23.28.1 (B:) Preprot 4.9 4.8E+02 0.035 17.6 4.7 34 417-450 17-50 (56)
8 d2axth1 f.23.33.1 (H:2-65) Pho 4.3 2.1E+02 0.016 20.0 2.2 25 21-45 12-36 (64)
9 d2h8pc1 f.14.1.1 (C:22-78) Pot 4.2 4.7E+02 0.035 17.4 4.1 33 417-452 2-34 (57)
10 d1mkma1 a.4.5.33 (A:1-75) Tran 4.0 1.1E+02 0.0077 21.5 0.4 26 388-413 26-51 (75)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=21.01 E-value=44 Score=25.21 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=38.0
Q ss_pred eeeehhhhHHHHHHHHHHHHhhhhhccc--------CCHHHHHHHHhhHHHHHHHhhhhhheeee
Q 012722 31 LEWTVAPLFACMCACFLFILLKVLILRH--------KNARERILIFFPVDYGLSAGLLCLFLVYR 87 (457)
Q Consensus 31 aSW~iSP~lSG~~s~~lF~~ir~~VL~r--------~np~~~al~~lPi~~~~t~~in~f~Iv~k 87 (457)
.-|++..++......++|.+.||.--+. .+.+|-..-++|.+..+.+++-.+-++|.
T Consensus 32 v~~i~~~I~~~V~~~l~~~~~~~r~~~~~~~~~~~~n~~LEiiWTviP~lILi~l~~pS~~~ly~ 96 (100)
T d3dtub2 32 ILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFN 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHBTTTCCSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777777777777663321 12477788888888888887777666553
No 2
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.13 E-value=30 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.815 Sum_probs=13.4
Q ss_pred hhHHHH-HHHHHHH--HHHHhhccc
Q 012722 336 VSWWFR-ALGGLGA--VMGFILCGW 357 (457)
Q Consensus 336 ~p~wil-~~g~~~i--~~G~~~~G~ 357 (457)
+|.|+. ..+|++. .+|+++||-
T Consensus 2 iPLWlv~tv~G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 2 IPLWIVATVAGMGVIVIVGLFFYGA 26 (34)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcEEEeeehhhhhhHhheeeeeeee
Confidence 588877 3344332 458888774
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=18.74 E-value=48 Score=25.40 Aligned_cols=57 Identities=18% Similarity=0.339 Sum_probs=37.6
Q ss_pred eeeehhhhHHHHHHHHHHHHhhhhhcc--------cCCHHHHHHHHhhHHHHHHHhhhhhheeee
Q 012722 31 LEWTVAPLFACMCACFLFILLKVLILR--------HKNARERILIFFPVDYGLSAGLLCLFLVYR 87 (457)
Q Consensus 31 aSW~iSP~lSG~~s~~lF~~ir~~VL~--------r~np~~~al~~lPi~~~~t~~in~f~Iv~k 87 (457)
.-|++..++...+..++|.++||.--+ ..+.+|-..-++|.+..+.+++-.+-++|+
T Consensus 38 v~~i~~~I~~~V~~~~~~~~~~~r~~~~~~~~~~~~n~~lEi~WTviP~lIL~~laipSl~~Ly~ 102 (107)
T d3ehbb2 38 VLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFR 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSBTTTSSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666667777777777764211 112477777788888888888777766654
No 4
>d1ppjc2 f.21.1.2 (C:15-260) Mitochondrial cytochrome b subunit, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=7.95 E-value=1.7e+02 Score=25.44 Aligned_cols=67 Identities=19% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHhhhhhcccCCHHHHHHHHhhHHHHHHHhhhhhheeeecCCc--c----ccc----chhHHHHHHHHHHHHHHHhhhh
Q 012722 48 FILLKVLILRHKNARERILIFFPVDYGLSAGLLCLFLVYRVRGH--L----VHI----PRWVTIAAVALATFIGAVLPLV 117 (457)
Q Consensus 48 F~~ir~~VL~r~np~~~al~~lPi~~~~t~~in~f~Iv~kG~~~--~----l~~----~~w~~~~~~~v~~~vg~ll~~~ 117 (457)
-.+.|++.++ .++|+.....+.+=.++.-.+|++. + .|+ |.+..-...++.+.+..++.+.
T Consensus 159 ~TL~RFf~lH---------~lLPfiil~li~~Hl~~lh~~GssnPlG~~s~~dkIpF~Pyf~~KDl~~~~~~l~~~~~~v 229 (246)
T d1ppjc2 159 ATLTRFFAFH---------FILPFIIMAIAMVHLLFLHETGSNNPTGISSDVDKIPFHPYYTIKDILGALLLILALMLLV 229 (246)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHCCCCTTCSCCTTSEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCEeEECchHHHHHHHHHHHHHHHHHHHH
Confidence 3566777765 4689999998888888888888872 2 244 3333334555555555555455
Q ss_pred hcccee
Q 012722 118 VIVPLA 123 (457)
Q Consensus 118 ~~vP~l 123 (457)
++.|++
T Consensus 230 ~f~P~~ 235 (246)
T d1ppjc2 230 LFAPDL 235 (246)
T ss_dssp HHCTTT
T ss_pred HhccCc
Confidence 556764
No 5
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.08 E-value=88 Score=18.74 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhhccchhHh
Q 012722 340 FRALGGLGAVMGFILCGWKLTQ 361 (457)
Q Consensus 340 il~~g~~~i~~G~~~~G~rVi~ 361 (457)
-+++|+++..+|..++=.+|.+
T Consensus 9 glligal~~tlgiylgllkvvk 30 (32)
T d1q90l_ 9 GLLIGALVFTLGIYLGLLKVVK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3578888888887766555543
No 6
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=5.64 E-value=1.8e+02 Score=17.64 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 012722 39 FACMCACFLFILLKVLI 55 (457)
Q Consensus 39 lSG~~s~~lF~~ir~~V 55 (457)
+.|..-..+|=++||||
T Consensus 16 ~tg~alg~lypvvkyfi 32 (34)
T d2e74d2 16 VTGVALGALYPLVKYFI 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhhhhHHhhcC
Confidence 56788889999999997
No 7
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=4.89 E-value=4.8e+02 Score=17.55 Aligned_cols=34 Identities=6% Similarity=-0.105 Sum_probs=27.7
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q 012722 417 NVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVH 450 (457)
Q Consensus 417 ~V~w~~~~~I~~~WiiT~p~a~~is~~l~~~~~~ 450 (457)
.=+|+.+.+|...=-+-+.+-|.++++++.+..+
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~IGf~I~li~~~ 50 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGIIGYIIHVPATY 50 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3489999999988888888888999888876544
No 8
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.34 E-value=2.1e+02 Score=19.95 Aligned_cols=25 Identities=16% Similarity=0.162 Sum_probs=20.4
Q ss_pred cCCCceeeeeeeeehhhhHHHHHHH
Q 012722 21 FNGGGLLWIFLEWTVAPLFACMCAC 45 (457)
Q Consensus 21 ~~~~Gv~~IvaSW~iSP~lSG~~s~ 45 (457)
|..+.-++++-.|.-.|+++.+++-
T Consensus 12 plNSeyGKVaPGWGTTplMgv~m~L 36 (64)
T d2axth1 12 PLNSEYGKVAPGWGTTPLMAVFMGL 36 (64)
T ss_dssp TTTTCSSCCCSTTTTHHHHHHHHHH
T ss_pred ccccccCcccCCcCccHHHHHHHHH
Confidence 4556688999999999999887764
No 9
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=4.22 E-value=4.7e+02 Score=17.39 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=21.7
Q ss_pred ccchHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCC
Q 012722 417 NVNWKLLFKFICGWVMTIIFCCGAAFAIFYASVHAP 452 (457)
Q Consensus 417 ~V~w~~~~~I~~~WiiT~p~a~~is~~l~~~~~~aP 452 (457)
+++||.+.-.++-.++.+.+ .|.++|.+=.++|
T Consensus 2 a~~~R~~~~~~~~~~i~i~~---~s~~~y~~E~~~~ 34 (57)
T d2h8pc1 2 ALHWRAAGAATVLLVIVLLA---GSYLAVLAERGAP 34 (57)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHHHTTST
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcCCC
Confidence 57898888777766655543 3555666666655
No 10
>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=4.01 E-value=1.1e+02 Score=21.47 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHhcCCccccccccccceeeeeeeC
Q 012722 388 IVSTTNLPVSTVHAFVGSLVGVGIAD 413 (457)
Q Consensus 388 ~as~~GlPVSTTh~ivGavvGvG~~~ 413 (457)
+|..+|+|-||+|=++....--|+..
T Consensus 26 ia~~~~~~~st~~rll~tL~~~g~l~ 51 (75)
T d1mkma1 26 IAEKFNMSVSNAYKYMVVLEEKGFVL 51 (75)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 77889999999999999999999887
Done!