BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012724
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M2O|A Chain A, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|C Chain C, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2V|A Chain A, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 768
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 166/440 (37%), Gaps = 71/440 (16%)
Query: 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAP---VYGSDGHMLPRCENCYA 58
VR T + FPS ++ +P G TP DE AP V S H C +
Sbjct: 11 GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH-------CKS 63
Query: 59 YFNTYCELE--QWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
N YC ++ +W+ Q YT+ S ++ L L+ + E
Sbjct: 64 ILNPYCVIDPRNSSWSCPICNSRNHLPPQ----YTN--------LSQENMPLELQSTTIE 111
Query: 117 TMQARPVYVA-----AVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDV 171
+ +PV V VDL+S E L+ + ++ +L +P AL GL T+ + + L+D+
Sbjct: 112 YITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDL 171
Query: 172 QGAIPVVKNVFI---------------------PSDTEDTLSLELEDVMP--LSQFLAPV 208
NVF P L + V P L++F P+
Sbjct: 172 SSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPL 231
Query: 209 ETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFA 268
E + + LE L P W AG + G L + SL L Y N
Sbjct: 232 EQVEFKLNQLLENLSP-DQWSVPAGHRP------LRATGSALNIASLL--LQGCYKNI-- 280
Query: 269 LARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRAL-LPEQTPFYKDLAAVAVQAG 326
AR+ F SGP G + + S + D+D A + FY +A G
Sbjct: 281 PARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANG 340
Query: 327 VCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAF 380
VDIFA + ++ +K L+ +GG L L + + Q R+ ++ AF
Sbjct: 341 HTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAF 400
Query: 381 NCIMRLRTSSEFKPGHSYGH 400
N M ++TS + K GH
Sbjct: 401 NGNMAVKTSKDLKVQGLIGH 420
>pdb|2QTV|A Chain A, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 772
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 109/440 (24%), Positives = 166/440 (37%), Gaps = 71/440 (16%)
Query: 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAP---VYGSDGHMLPRCENCYA 58
VR T + FPS ++ +P G TP DE AP V S H C +
Sbjct: 15 GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDELNVAPYNPVVCSGPH-------CKS 67
Query: 59 YFNTYCELE--QWAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLDLPLEGSEEE 116
N YC ++ +W+ Q YT+ S ++ L L+ + E
Sbjct: 68 ILNPYCVIDPRNSSWSCPICNSRNHLPPQ----YTN--------LSQENMPLELQSTTIE 115
Query: 117 TMQARPVYVA-----AVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYDV 171
+ +PV V VDL+S E L+ + ++ +L +P AL GL T+ + + L+D+
Sbjct: 116 YITNKPVTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALIGLITYGNVVQLHDL 175
Query: 172 QGAIPVVKNVFI---------------------PSDTEDTLSLELEDVMP--LSQFLAPV 208
NVF P L + V P L++F P+
Sbjct: 176 SSETIDRCNVFRGDREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPL 235
Query: 209 ETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFA 268
E + + LE L P W AG + G L + SL L Y N
Sbjct: 236 EQVEFKLNQLLENLSP-DQWSVPAGHRP------LRATGSALNIASLL--LQGCYKNI-- 284
Query: 269 LARVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRAL-LPEQTPFYKDLAAVAVQAG 326
AR+ F SGP G + + S + D+D A + FY +A G
Sbjct: 285 PARIILFASGPGTVAPGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANG 344
Query: 327 VCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAF 380
VDIFA + ++ +K L+ +GG L L + + Q R+ ++ AF
Sbjct: 345 HTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAF 404
Query: 381 NCIMRLRTSSEFKPGHSYGH 400
N M ++TS + K GH
Sbjct: 405 NGNMAVKTSKDLKVQGLIGH 424
>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 748
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 160/418 (38%), Gaps = 56/418 (13%)
Query: 4 RATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTY 63
R T++ P + LP G+ + PF + PV S + RC +C Y N +
Sbjct: 42 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQ---LPVVTSST--IVRCRSCRTYINPF 96
Query: 64 CE-LEQWAWTXXXXXXXXXXXXQAIAR-----YTHPQSCAEMISSFIDLDLPLEGSEEET 117
L+Q W + + Y P E+ ++ I+ P E
Sbjct: 97 VSFLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPP 156
Query: 118 MQARPVYVAAVDLSSSEE---FLELTRSALQAALEAVPSGAL--FGLATFSHKIGLYDVQ 172
PVY+ D+S + +L +L L+ +P G TF I Y +Q
Sbjct: 157 QP--PVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQ 214
Query: 173 GAIPVVKNVFIPSDTEDTLSLELEDVMPLSQ-FLAPVETFKENITSALETLRPTTSWERT 231
++ + I SD ED +P+ + L + KE + L+TL
Sbjct: 215 ESLSQ-PQMLIVSDIEDVF-------IPMPENLLVNLNESKELVQDLLKTL--------- 257
Query: 232 AGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRR 291
Q L G A+++ F + G R+ F + P G G L R
Sbjct: 258 ---PQMFTKTLETQSALGPALQAAFKLMSPTGG------RMSVFQTQLPTLGVGALKPR- 307
Query: 292 YGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351
E+ + D + P T FYK LA V VD+F ++ +Y+DLASL +S S
Sbjct: 308 --EEPNHRSSAKDIHMTPS-TDFYKKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYS 364
Query: 352 GGSLFLYSS-------TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFF 402
GS++ Y S L +++ R L+R F +MR+R + +G+FF
Sbjct: 365 AGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFF 422
>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 753
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 160/418 (38%), Gaps = 56/418 (13%)
Query: 4 RATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTY 63
R T++ P + LP G+ + PF + PV S + RC +C Y N +
Sbjct: 47 RCTLTSIPQTQALLNKAKLPLGLLLHPFKDLVQ---LPVVTSST--IVRCRSCRTYINPF 101
Query: 64 CE-LEQWAWTXXXXXXXXXXXXQAIAR-----YTHPQSCAEMISSFIDLDLPLEGSEEET 117
L+Q W + + Y P E+ ++ I+ P E
Sbjct: 102 VSFLDQRRWKCNLCYRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIEFMAPSEYMLRPP 161
Query: 118 MQARPVYVAAVDLSSSEE---FLELTRSALQAALEAVPSGAL--FGLATFSHKIGLYDVQ 172
PVY+ D+S + +L +L L+ +P G TF I Y +Q
Sbjct: 162 QP--PVYLFVFDVSHNAVETGYLNSVCQSLLDNLDLLPGNTRTKIGFITFDSTIHFYGLQ 219
Query: 173 GAIPVVKNVFIPSDTEDTLSLELEDVMPLSQ-FLAPVETFKENITSALETLRPTTSWERT 231
++ + I SD ED +P+ + L + KE + L+TL
Sbjct: 220 ESLSQ-PQMLIVSDIEDVF-------IPMPENLLVNLNESKELVQDLLKTL--------- 262
Query: 232 AGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRR 291
Q L G A+++ F + G R+ F + P G G L R
Sbjct: 263 ---PQMFTKTLETQSALGPALQAAFKLMSPTGG------RMSVFQTQLPTLGVGALKPR- 312
Query: 292 YGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351
E+ + D + P T FYK LA V VD+F ++ +Y+DLASL +S S
Sbjct: 313 --EEPNHRSSAKDIHMTPS-TDFYKKLALDCSGQQVAVDLFLLSGQYSDLASLGCISRYS 369
Query: 352 GGSLFLYSS-------TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFF 402
GS++ Y S L +++ R L+R F +MR+R + +G+FF
Sbjct: 370 AGSVYYYPSYHHQHNPVQVQKLQKELQRYLTRKIGFEAVMRIRCTKGLSIHTFHGNFF 427
>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b
Length = 751
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 101/418 (24%), Positives = 164/418 (39%), Gaps = 55/418 (13%)
Query: 4 RATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTY 63
R T++ P + LP G+ + PF + PV S+ + RC +C Y N +
Sbjct: 44 RCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ---LPVITSNT--IVRCRSCRTYINPF 98
Query: 64 CE-LEQWAWTXXXXXXXXXXXXQAI-----ARYTHPQSCAEMISSFIDLDLPLEGSEEET 117
++Q W + + Y P E+ +S ++ + S+
Sbjct: 99 VSFIDQRRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEF---IASSDYML 155
Query: 118 MQARP-VYVAAVDLSSSEE---FLELTRSALQAALEAVP--SGALFGLATFSHKIGLYDV 171
+P VY+ +D+S + +L + +L L+ +P S G TF I Y++
Sbjct: 156 RPPQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLPGDSRTRIGFMTFDSTIHFYNL 215
Query: 172 QGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERT 231
Q + + I SD +D L D L + KE I L L + R
Sbjct: 216 QEGLSQ-PQMLIVSDIDDVF-LPTPD-----SLLVNLYESKELIKDLLNALPNMFTNTRE 268
Query: 232 AGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRR 291
+A G A+++ F + G RV F + P GAG L +R
Sbjct: 269 THSA------------LGPALQAAFKLMSPTGG------RVSVFQTQLPSLGAGLLQSRE 310
Query: 292 YGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351
Q +S L T FYK LA VD+F ++++Y+DLASL +S S
Sbjct: 311 DPNQRSSTKVVQH---LGPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYS 367
Query: 352 GGSLFLYSS-------TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGHFF 402
G ++ Y S + L +D+ R L+R F +MR+R + +G+FF
Sbjct: 368 AGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFEAVMRIRCTKGLSMHTFHGNFF 425
>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Bet1
pdb|1PD0|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide From The Snare Protein Sed5
(Yeast Syntaxin-5)
pdb|1PD1|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24,
Complexed With A Peptide Containing The Dxe Cargo
Sorting Signal Of Yeast Sys1 Protein
Length = 810
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 97/424 (22%), Positives = 164/424 (38%), Gaps = 53/424 (12%)
Query: 3 VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNT 62
+R+T++ P + + S LP+G+ + P+ ++ P DG ++ RC C +Y N
Sbjct: 66 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDG-LIVRCRRCRSYMNP 124
Query: 63 YCE-LEQ-WAWTXXXXXXXXXXXXQA--------IARYTHPQ-SCAEMISSFIDLDLPLE 111
+ +EQ W Q +RY + CA M
Sbjct: 125 FVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVM---------EYM 175
Query: 112 GSEEETMQARP--VYVAAVDLSSSE---EFLELTRSALQAALEAVPSGALFGLATFSHKI 166
+E T++ P Y +D+S S L T + L L+++P+ +I
Sbjct: 176 APKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNH------DERTRI 229
Query: 167 GLYDVQGAIPVVKNVFIPSDTEDTL-SLELEDVMPLSQFLAPVETFKENITSALETLRPT 225
+ V AI K IP D+E+ S + ++M ++ P ++ +L+ R
Sbjct: 230 SILCVDNAIHYFK---IPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQN 286
Query: 226 TSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAG 285
T Q L+ G A++S ++ +G G ++ P+ G G
Sbjct: 287 IETLLTK-IPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTL------PNLGIG 339
Query: 286 QLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLK 345
+L R + E A LL Q FYK+ + + VD+F + +Y D+ASL
Sbjct: 340 KLQRRNESGVVNTSKETAQ--LLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLS 397
Query: 346 FLSIESGGSLFLYSSTDDSTLPQDIYRM-------LSRPYAFNCIMRLRTSSEFKPGHSY 398
LS + G Y P DI + +S + +MR R S+ + Y
Sbjct: 398 NLSRFTAGQTHFYPGFSGKN-PNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFY 456
Query: 399 GHFF 402
GHFF
Sbjct: 457 GHFF 460
>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER
Length = 926
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 97/424 (22%), Positives = 164/424 (38%), Gaps = 53/424 (12%)
Query: 3 VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNT 62
+R+T++ P + + S LP+G+ + P+ ++ P DG ++ RC C +Y N
Sbjct: 182 IRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNEDG-LIVRCRRCRSYMNP 240
Query: 63 YCE-LEQ-WAWTXXXXXXXXXXXXQA--------IARYTHPQ-SCAEMISSFIDLDLPLE 111
+ +EQ W Q +RY + CA M
Sbjct: 241 FVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVM---------EYM 291
Query: 112 GSEEETMQARP--VYVAAVDLSSSE---EFLELTRSALQAALEAVPSGALFGLATFSHKI 166
+E T++ P Y +D+S S L T + L L+++P+ +I
Sbjct: 292 APKEYTLRQPPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDSIPNH------DERTRI 345
Query: 167 GLYDVQGAIPVVKNVFIPSDTEDTL-SLELEDVMPLSQFLAPVETFKENITSALETLRPT 225
+ V AI K IP D+E+ S + ++M ++ P ++ +L+ R
Sbjct: 346 SILCVDNAIHYFK---IPLDSENNEESADQINMMDIADLEEPFLPRPNSMVVSLKACRQN 402
Query: 226 TSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAG 285
T Q L+ G A++S ++ +G G ++ P+ G G
Sbjct: 403 IETLLTK-IPQIFQSNLITNFALGPALKSAYHLIGGVGGKIIVVSGTL------PNLGIG 455
Query: 286 QLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLK 345
+L R + E A LL Q FYK+ + + VD+F + +Y D+ASL
Sbjct: 456 KLQRRNESGVVNTSKETAQ--LLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLS 513
Query: 346 FLSIESGGSLFLYSSTDDSTLPQDIYRM-------LSRPYAFNCIMRLRTSSEFKPGHSY 398
LS + G Y P DI + +S + +MR R S+ + Y
Sbjct: 514 NLSRFTAGQTHFYPGFSGKN-PNDIVKFSTEFAKHISMDFCMETVMRARGSTGLRMSRFY 572
Query: 399 GHFF 402
GHFF
Sbjct: 573 GHFF 576
>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|B Chain B, Crystal Structure Of The Human Copii-Coat Protein Sec24c
pdb|3EH2|C Chain C, Crystal Structure Of The Human Copii-Coat Protein Sec24c
Length = 766
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 94/427 (22%), Positives = 159/427 (37%), Gaps = 56/427 (13%)
Query: 3 VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLP-RCENCYAYFN 61
+R T P D + + +P + P A A+P G P RC C AY
Sbjct: 46 IRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYM- 104
Query: 62 TYCELEQWAWTXXXXXXXXXXXXQAI--ARYTHPQSCAEMISSFIDLDLPLEGSE----- 114
C Q+ + + H + + ++ +L L E
Sbjct: 105 --CPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATV 162
Query: 115 ----EETMQARPVYVAAVDLSSSEEFLELTR---SALQAALEAVP-------SGALFGLA 160
+ P ++ +D+S + L R L++ L+ +P S G
Sbjct: 163 DYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLDFLPREGGAEESAIRVGFV 222
Query: 161 TFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQFLAPVETFKENITSALE 220
T++ + Y+V+ ++ + + SD D V L FL V + ITS L+
Sbjct: 223 TYNKVLHFYNVKSSL-AQPQMMVVSDVADMF------VPLLDGFLVNVNESRAVITSLLD 275
Query: 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAF-LSGP 279
+ + R V+ G ME+L ++F F S P
Sbjct: 276 QIPEMFADTRETETV--FVPVIQAG------MEAL--------KAAECAGKLFLFHTSLP 319
Query: 280 PDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYT 339
G+L R + D ++ L QT Y+ LA V G CVD+F N+Y
Sbjct: 320 IAEAPGKLKNR---DDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYV 376
Query: 340 DLASLKFLSIESGGSLFLYSS----TDDSTLPQDIYRMLSRPYAFNCIMRLRTSSEFKPG 395
D+A+L + +GGS++ Y+S D D+ R + + F+ +MR+RTS+ +
Sbjct: 377 DVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQKVVGFDAVMRVRTSTGIRAV 436
Query: 396 HSYGHFF 402
+G F+
Sbjct: 437 DFFGAFY 443
>pdb|2NUP|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
pdb|2NUT|A Chain A, Crystal Structure Of The Human Sec23a24A HETERODIMER,
Complexed With The Snare Protein Sec22b
Length = 769
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 85/377 (22%), Positives = 151/377 (40%), Gaps = 54/377 (14%)
Query: 56 CYAYFNTYCELEQ----WAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLD-LPL 110
C A N C+++ WA I+ P AE++ F ++ + L
Sbjct: 70 CRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP---AELLPQFSSIEYVVL 126
Query: 111 EGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYD 170
G Q +++ VD +E L+ + ++Q +L +P AL GL TF + +++
Sbjct: 127 RGP-----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHE 181
Query: 171 VQGAIPVVKNVFIPSDTEDTLSLELEDVMPLSQ--------------------FLAPVET 210
+ G + K+ ++ T+D + +L++++ LS+ FL PV+
Sbjct: 182 L-GCEGISKS-YVFRGTKDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQK 239
Query: 211 FKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALA 270
N+T L L+ W QG + R G+A+ L + NT A
Sbjct: 240 IDMNLTDLLGELQ-RDPWP----VPQGKRPL----RSSGVALSIAVGLLECTFPNTGA-- 288
Query: 271 RVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRA-LLPEQTPFYKDLAAVAVQAGVC 328
R+ F+ GP G G + S + D D A + + T ++ LA A G
Sbjct: 289 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 348
Query: 329 VDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFNC 382
+DI+A + T L +K +GG + + S + S Q R+ ++ F
Sbjct: 349 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGG 408
Query: 383 IMRLRTSSEFKPGHSYG 399
+ ++TS E K + G
Sbjct: 409 TLEIKTSREIKISGAIG 425
>pdb|3EG9|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
pdb|3EGD|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND
BOUND To The Transport Signal Sequence Of Vesicular
Stomatitis Virus Glycoprotein
pdb|3EGX|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22B AND
Bound To The Transport Signal Sequence Of The Snare
Protein Bet1
Length = 764
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 152/377 (40%), Gaps = 54/377 (14%)
Query: 56 CYAYFNTYCELEQ----WAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLD-LPL 110
C A N C+++ WA I+ P AE++ F ++ + L
Sbjct: 66 CRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP---AELLPQFSSIEYVVL 122
Query: 111 EGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYD 170
G Q +++ VD +E L+ + ++Q +L +P AL GL TF + +++
Sbjct: 123 RGP-----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHE 177
Query: 171 VQGAIPVVKNVFIPSDTEDTLSLELEDVM-----PLSQ---------------FLAPVET 210
+ G + K+ ++ T+D + +L++++ PL+Q FL PV+
Sbjct: 178 L-GCEGISKS-YVFRGTKDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRFLQPVQK 235
Query: 211 FKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALA 270
N+T L L+ W QG + R G+A+ L + NT A
Sbjct: 236 IDMNLTDLLGELQ-RDPWP----VPQGKRPL----RSSGVALSIAVGLLECTFPNTGA-- 284
Query: 271 RVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRA-LLPEQTPFYKDLAAVAVQAGVC 328
R+ F+ GP G G + S + D D A + + T ++ LA A G
Sbjct: 285 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 344
Query: 329 VDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFNC 382
+DI+A + T L +K +GG + + S + S Q R+ ++ F
Sbjct: 345 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGG 404
Query: 383 IMRLRTSSEFKPGHSYG 399
+ ++TS E K + G
Sbjct: 405 TLEIKTSREIKISGAIG 421
>pdb|3EFO|A Chain A, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
Length = 765
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 151/377 (40%), Gaps = 54/377 (14%)
Query: 56 CYAYFNTYCELEQ----WAWTXXXXXXXXXXXXQAIARYTHPQSCAEMISSFIDLD-LPL 110
C A N C+++ WA I+ P AE++ F ++ + L
Sbjct: 66 CRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQP---AELLPQFSSIEYVVL 122
Query: 111 EGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALFGLATFSHKIGLYD 170
G Q +++ VD +E L+ + ++Q +L +P AL GL TF + +++
Sbjct: 123 RGP-----QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMVQVHE 177
Query: 171 VQGAIPVVKNVFIPSDTEDTLSLELEDVM-----PLSQ---------------FLAPVET 210
+ G + K+ ++ T D + +L++++ PL+Q FL PV+
Sbjct: 178 L-GCEGISKS-YVFRGTGDLSAKQLQEMLGLSKVPLTQATRGPQVQQPPPSNRFLQPVQK 235
Query: 211 FKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALA 270
N+T L L+ W QG + R G+A+ L + NT A
Sbjct: 236 IDMNLTDLLGELQ-RDPWP----VPQGKRPL----RSSGVALSIAVGLLECTFPNTGA-- 284
Query: 271 RVFAFLSGPPDHGAGQLDTRRYGEQYASKGE-DADRA-LLPEQTPFYKDLAAVAVQAGVC 328
R+ F+ GP G G + S + D D A + + T ++ LA A G
Sbjct: 285 RIMMFIGGPATQGPGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRAATTGHV 344
Query: 329 VDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRMLSR------PYAFNC 382
+DI+A + T L +K +GG + + S + S Q R+ ++ F
Sbjct: 345 IDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFTKDMHGQFKMGFGG 404
Query: 383 IMRLRTSSEFKPGHSYG 399
+ ++TS E K + G
Sbjct: 405 TLEIKTSREIKISGAIG 421
>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
SYNTAXIN 5
pdb|3EG9|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein
Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF
MEMBRIN
Length = 770
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 270 ARVFAFLSGPPDHGA-GQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVC 328
++F F S P A G+L R + D ++ L QT Y LA V G
Sbjct: 313 GKLFIFHSSLPTAEAPGKLKNR---DDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCS 369
Query: 329 VDIFAITNEYTDLASLKFLSIESGGSLFLYSS----TDDSTLPQDIYRMLSRPYAFNCIM 384
V +F ++Y D+ASL + +GG+L+ Y++ D D+ + + F+ IM
Sbjct: 370 VTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIEKKIGFDAIM 429
Query: 385 RLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFD 427
R+RTS+ F+ +G + + I CD T + D
Sbjct: 430 RVRTSTGFRATDFFGGILMNNTTDVEMAAIDCDKAVTVEFKHD 472
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 3 VRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVY----GSDGHMLPRCENCYA 58
+R T FP D + + +P + PFAT N +P+Y G G + RC C A
Sbjct: 50 IRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSN-ESPLYLVNHGESGPV--RCNRCKA 106
Query: 59 YF 60
Y
Sbjct: 107 YM 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,696,229
Number of Sequences: 62578
Number of extensions: 562332
Number of successful extensions: 1055
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1024
Number of HSP's gapped (non-prelim): 18
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)