Query 012724
Match_columns 457
No_of_seqs 139 out of 792
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 15:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012724.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012724hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3eh1_A Protein transport prote 100.0 4.6E-91 1.6E-95 754.3 39.8 413 2-455 42-475 (751)
2 3eh2_A Protein transport prote 100.0 1.1E-90 3.7E-95 753.7 36.5 422 2-455 45-493 (766)
3 3efo_B SEC24 related gene fami 100.0 1.3E-90 4.4E-95 753.5 36.4 422 2-455 49-497 (770)
4 1m2v_B SEC24, protein transpor 100.0 2.6E-88 8.9E-93 743.0 35.8 417 1-455 180-625 (926)
5 1pcx_A Protein transport prote 100.0 3.6E-88 1.2E-92 738.7 36.8 417 1-455 64-509 (810)
6 1m2o_A SEC23, protein transpor 100.0 6.4E-87 2.2E-91 726.7 40.2 429 2-455 11-501 (768)
7 2nut_A Protein transport prote 100.0 2E-85 6.9E-90 714.3 43.9 429 2-455 20-497 (769)
8 2yrc_A Protein transport prote 99.5 1.3E-14 4.6E-19 104.3 2.3 41 47-87 6-50 (59)
9 4fx5_A VON willebrand factor t 99.2 2.8E-09 9.5E-14 109.9 26.7 250 123-452 79-346 (464)
10 3ibs_A Conserved hypothetical 99.0 1.4E-08 4.6E-13 93.6 16.3 157 120-360 10-197 (218)
11 4b4t_W RPN10, 26S proteasome r 98.8 5E-08 1.7E-12 92.5 12.5 148 123-353 5-163 (268)
12 1ijb_A VON willebrand factor; 98.7 6.4E-07 2.2E-11 81.6 18.5 164 121-363 13-183 (202)
13 1v7p_C Integrin alpha-2; snake 98.6 1.3E-06 4.5E-11 79.2 17.5 174 121-373 6-194 (200)
14 2b2x_A Integrin alpha-1; compu 98.6 9.3E-07 3.2E-11 81.8 16.6 175 121-374 22-211 (223)
15 1n3y_A Integrin alpha-X; alpha 98.6 8.5E-07 2.9E-11 80.1 14.0 175 121-374 9-193 (198)
16 1atz_A VON willebrand factor; 98.5 4.5E-06 1.5E-10 74.9 18.1 159 121-362 5-171 (189)
17 1pt6_A Integrin alpha-1; cell 98.5 2.1E-06 7.2E-11 78.7 16.2 177 121-376 7-198 (213)
18 1mf7_A Integrin alpha M; cell 98.5 1.3E-06 4.4E-11 78.9 14.4 176 121-375 5-190 (194)
19 1q0p_A Complement factor B; VO 98.5 4.4E-06 1.5E-10 76.7 18.4 170 121-361 15-205 (223)
20 2x31_A Magnesium-chelatase 60 98.5 6.8E-09 2.3E-13 93.6 -1.0 164 121-359 5-172 (189)
21 2x5n_A SPRPN10, 26S proteasome 98.5 8.2E-07 2.8E-11 80.4 12.3 163 123-369 4-179 (192)
22 4hqf_A Thrombospondin-related 98.5 2.6E-06 8.8E-11 81.8 16.4 166 121-363 21-197 (281)
23 2odp_A Complement C2; C3/C5 co 98.5 1.8E-06 6.2E-11 89.9 16.5 177 121-373 9-209 (509)
24 1rrk_A Complement factor B; BB 98.4 4.4E-06 1.5E-10 86.6 16.9 177 123-361 3-191 (497)
25 4hqo_A Sporozoite surface prot 98.4 4.3E-06 1.5E-10 79.6 14.9 178 121-377 18-205 (266)
26 1mjn_A Integrin alpha-L; rossm 98.4 1.4E-05 4.6E-10 71.2 17.3 164 122-372 3-177 (179)
27 1shu_X Anthrax toxin receptor 98.4 9.9E-06 3.4E-10 71.9 15.7 153 121-354 6-160 (182)
28 3n2n_F Anthrax toxin receptor 98.3 3E-06 1E-10 75.6 11.5 160 122-362 8-171 (185)
29 3zqk_A VON willebrand factor; 98.2 1.9E-05 6.6E-10 71.5 14.6 153 121-363 21-181 (199)
30 2xgg_A Microneme protein 2; A/ 98.1 6.9E-05 2.3E-09 66.5 15.1 138 121-336 17-161 (178)
31 3hrz_D Complement factor B; se 98.1 3.7E-06 1.3E-10 91.6 7.7 177 123-361 245-433 (741)
32 1jey_B KU80; double-strand DNA 97.9 3.3E-05 1.1E-09 81.5 10.9 202 122-394 8-259 (565)
33 3k6s_A Integrin alpha-X; cell 97.8 4.5E-05 1.5E-09 86.3 9.4 161 123-362 132-301 (1095)
34 3fcs_B Integrin beta-3; beta p 96.1 0.64 2.2E-05 49.7 22.0 230 123-395 113-369 (690)
35 2ww8_A RRGA, cell WALL surface 95.9 0.027 9.2E-07 62.1 10.6 47 121-167 224-280 (893)
36 1jey_A KU70; double-strand DNA 95.9 0.086 2.9E-06 55.8 14.2 155 123-337 37-208 (609)
37 1yvr_A RO autoantigen, 60-kDa 95.6 0.03 1E-06 58.4 8.8 46 120-165 367-418 (538)
38 3t3p_B Integrin beta-3; integr 95.1 3.2 0.00011 41.9 22.9 229 122-395 112-369 (472)
39 3rag_A Uncharacterized protein 94.8 0.034 1.2E-06 51.3 5.8 45 121-165 134-182 (242)
40 2nvo_A RO sixty-related protei 92.5 0.47 1.6E-05 49.3 10.0 32 245-283 440-471 (535)
41 3vi3_B Integrin beta-1; beta p 92.5 9.7 0.00033 38.2 22.1 189 121-341 121-324 (454)
42 3v4v_B Integrin beta-7; cell a 89.9 18 0.00063 36.7 21.1 229 123-396 134-389 (503)
43 3k6s_B Integrin beta-2; cell r 87.4 1.8 6.2E-05 46.1 9.4 45 121-165 104-152 (687)
44 2iue_A Pactolus I-domain; memb 84.2 1.3 4.6E-05 39.9 5.5 43 123-165 5-51 (212)
45 2a20_A Regulating synaptic mem 82.8 0.28 9.5E-06 34.2 0.3 27 51-79 34-60 (62)
46 3rag_A Uncharacterized protein 81.8 2.9 0.0001 38.4 6.8 62 270-360 11-76 (242)
47 2j9u_B VPS36, vacuolar protein 79.3 0.33 1.1E-05 35.7 -0.3 17 69-85 16-32 (76)
48 2gmg_A Hypothetical protein PF 60.3 2 6.7E-05 33.9 0.2 34 49-85 66-99 (105)
49 1vq8_Z 50S ribosomal protein L 60.0 5.3 0.00018 30.2 2.5 30 50-81 27-56 (83)
50 1gh9_A 8.3 kDa protein (gene M 57.7 1.9 6.7E-05 31.6 -0.2 31 49-83 3-33 (71)
51 1s24_A Rubredoxin 2; electron 57.3 2.2 7.6E-05 32.5 0.0 31 49-79 34-77 (87)
52 6rxn_A Rubredoxin; electron tr 56.8 1.9 6.6E-05 28.7 -0.3 29 51-79 5-39 (46)
53 2avu_E Flagellar transcription 56.3 3 0.0001 36.8 0.7 28 49-77 133-161 (192)
54 4gat_A Nitrogen regulatory pro 56.3 3.9 0.00013 29.5 1.2 32 47-78 6-38 (66)
55 1yk4_A Rubredoxin, RD; electro 51.0 3.2 0.00011 28.4 -0.0 10 69-78 34-43 (52)
56 2csz_A Synaptotagmin-like prot 49.6 4 0.00014 30.2 0.3 29 51-79 43-73 (76)
57 4rxn_A Rubredoxin; electron tr 48.5 3.4 0.00012 28.5 -0.2 11 69-79 35-45 (54)
58 2akl_A PHNA-like protein PA012 45.3 12 0.00042 30.5 2.6 30 48-80 25-54 (138)
59 1pft_A TFIIB, PFTFIIBN; N-term 43.9 24 0.00084 23.3 3.6 28 50-80 5-34 (50)
60 2v3b_B Rubredoxin 2, rubredoxi 41.7 5.1 0.00017 27.7 -0.2 10 69-78 35-44 (55)
61 2kn9_A Rubredoxin; metalloprot 40.7 5.5 0.00019 29.9 -0.1 29 50-78 27-68 (81)
62 1yuz_A Nigerythrin; rubrythrin 40.3 8.8 0.0003 34.2 1.1 26 50-80 171-196 (202)
63 1e8j_A Rubredoxin; iron-sulfur 39.4 5 0.00017 27.4 -0.5 10 69-78 35-44 (52)
64 2lk0_A RNA-binding protein 5; 39.3 7.3 0.00025 23.6 0.3 13 69-81 4-16 (32)
65 4hc9_A Trans-acting T-cell-spe 39.3 6.2 0.00021 31.8 -0.1 30 49-78 4-34 (115)
66 1dx8_A Rubredoxin; electron tr 38.8 6.4 0.00022 28.7 -0.0 11 69-79 39-49 (70)
67 2zet_C Melanophilin; complex, 38.6 8.5 0.00029 32.6 0.7 32 50-81 85-119 (153)
68 1gnf_A Transcription factor GA 38.5 5.2 0.00018 26.6 -0.5 30 49-78 3-33 (46)
69 2vut_I AREA, nitrogen regulato 37.9 7.2 0.00025 25.5 0.1 29 50-78 1-30 (43)
70 3j20_Y 30S ribosomal protein S 37.1 18 0.0006 24.4 2.0 25 51-79 20-46 (50)
71 1b3t_A Protein (nuclear protei 36.8 42 0.0014 27.1 4.4 33 135-167 110-145 (147)
72 1wg8_A Predicted S-adenosylmet 34.1 18 0.00063 33.9 2.3 30 135-164 207-236 (285)
73 2kdx_A HYPA, hydrogenase/ureas 33.5 11 0.00038 30.3 0.6 28 50-81 73-101 (119)
74 2hgo_A CASSIICOLIN; toxin, dis 32.1 14 0.00049 20.6 0.7 25 52-76 2-27 (27)
75 2apo_B Ribosome biogenesis pro 31.6 17 0.00057 25.6 1.2 28 48-83 4-31 (60)
76 3tka_A Ribosomal RNA small sub 31.5 21 0.0007 34.5 2.2 30 135-164 248-277 (347)
77 2k1p_A Zinc finger RAN-binding 30.9 11 0.00039 22.9 0.2 13 69-81 5-17 (33)
78 1wii_A Hypothetical UPF0222 pr 30.8 10 0.00035 28.7 -0.0 16 68-83 21-36 (85)
79 1zbd_B Rabphilin-3A; G protein 30.6 22 0.00075 29.4 1.9 31 51-81 73-109 (134)
80 1w7p_D VPS36P, YLR417W; ESCRT- 30.5 11 0.00036 39.1 0.0 17 69-85 116-132 (566)
81 1x0t_A Ribonuclease P protein 27.8 18 0.0006 29.3 0.9 33 51-83 66-107 (120)
82 2kae_A GATA-type transcription 26.4 7.5 0.00026 28.4 -1.4 32 47-78 5-38 (71)
83 3j21_g 50S ribosomal protein L 25.9 20 0.00069 24.3 0.7 29 49-83 13-41 (51)
84 3gj5_B Nuclear pore complex pr 25.6 19 0.00063 22.2 0.5 17 67-83 4-20 (34)
85 1m6y_A S-adenosyl-methyltransf 24.5 24 0.00083 33.3 1.3 30 135-164 219-248 (301)
86 2k4x_A 30S ribosomal protein S 24.1 35 0.0012 23.4 1.7 27 51-79 19-45 (55)
87 4ayb_P DNA-directed RNA polyme 23.1 16 0.00053 24.2 -0.2 26 51-79 4-32 (48)
88 2k0a_A PRE-mRNA-splicing facto 22.6 17 0.0006 28.3 -0.1 38 51-88 30-75 (109)
89 2k3r_A Ribonuclease P protein 22.0 40 0.0014 27.3 1.9 33 51-83 61-102 (123)
90 1nj3_A NPL4; NZF domain, rubre 21.8 26 0.00089 20.7 0.6 15 69-83 5-19 (31)
91 3mjh_B Early endosome antigen 20.8 35 0.0012 21.0 1.0 14 70-83 5-18 (34)
92 2lce_A B-cell lymphoma 6 prote 20.4 26 0.00088 24.6 0.5 37 47-83 14-58 (74)
93 2co8_A NEDD9 interacting prote 20.3 45 0.0015 24.4 1.8 33 47-79 12-51 (82)
94 2cr8_A MDM4 protein; ZF-ranbp 20.1 27 0.00092 23.5 0.4 17 69-85 10-26 (53)
95 3uk3_C Zinc finger protein 217 20.1 19 0.00064 23.6 -0.4 34 49-82 3-44 (57)
No 1
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=100.00 E-value=4.6e-91 Score=754.33 Aligned_cols=413 Identities=24% Similarity=0.414 Sum_probs=365.0
Q ss_pred eeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCCCcccCCCCCCCCCcCcceEEecCceEe-CceEEEccCCCCC
Q 012724 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCENCYAYFNTYCELE-QWAWTCSLCGSLN 80 (457)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~p~~~~~~~~p~RC~~C~aYiNp~~~~~-~~~w~C~~C~~~N 80 (457)
+||+|||+||.+++++++++||||++|+||++..+ +|++. ..+|+||++|||||||||+|. +++|+||||+..|
T Consensus 42 ~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~~---~P~v~--~~~p~RC~rCrayiNPf~~f~~~~~w~Cn~C~~~N 116 (751)
T 3eh1_A 42 SFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLTQ---LPVIT--SNTIVRCRSCRTYINPFVSFIDQRRWKCNLCYRVN 116 (751)
T ss_dssp TEEESBSSEESSHHHHHHHCCCCEEEECTTCCCSC---CCEEC--CSCCCBCTTTCCBCCTTCEESSSSEEECTTTCCEE
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEecCCcCCC---CCccC--CCCCCcccCccCEeCCceEEecCCEEEcccccCCC
Confidence 69999999999999999999999999999998653 45543 457999999999999999984 5899999999999
Q ss_pred CCChhhhc-----ccCCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHhCC
Q 012724 81 GLSSQAIA-----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEAVP 152 (457)
Q Consensus 81 ~v~~~y~~-----~~~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~l~ 152 (457)
++|++|.. ++.+.++||||++|+|||++|++|..++ +.||+|+||||+|..+ |++++++++|+++|+.||
T Consensus 117 ~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~~r~--p~pp~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~~lp 194 (751)
T 3eh1_A 117 DVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYMLRP--PQPAVYLFVLDVSHNAVEAGYLTILCQSLLENLDKLP 194 (751)
T ss_dssp ECCGGGC---------CGGGSHHHHCSEEEEEECGGGCSSS--CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHhcccccccccCcccCchhccceEEEEcChhhhcCC--CCCcEEEEEEEccHhhhhhhHHHHHHHHHHHHHHhcC
Confidence 99999842 2335678999999999999999998653 5799999999999865 779999999999999999
Q ss_pred CCc--EEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHHHHhcCCCCCc
Q 012724 153 SGA--LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALETLRPTTSW 228 (457)
Q Consensus 153 ~~~--~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~l~~l~~~~~~ 228 (457)
++. +|||||||+.||||+++.+..+++++ ++.|++| ++|+ ++||+|++|+++.|+++|++|+.++.+
T Consensus 195 ~~~~~~VG~ITfd~~vh~y~l~~~~~~~qml---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~ 265 (751)
T 3eh1_A 195 GDSRTRIGFMTFDSTIHFYNLQEGLSQPQML---------IVSDIDDVFLPTPDSLLVNLYESKELIKDLLNALPNMFTN 265 (751)
T ss_dssp CCTTCEEEEEEESSSEEEEECCTTCSSCEEE---------EESCTTCTTSCCGGGTSEETTTTHHHHHHHHHHGGGTSTT
T ss_pred CCcCcEEEEEEeCCEEEEEECCCCcccceee---------ccccccccCCCChhhhcccHHHHHHHHHHHHHhhhHhhcC
Confidence 855 99999999999999999876655553 4568888 4677 689999999999999999999887543
Q ss_pred ccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCccccccccCccCCCCccccccCC
Q 012724 229 ERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALL 308 (457)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~ 308 (457)
.. ++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.|++.+. + ++++|+.++
T Consensus 266 ~~------------~~~~~~G~AL~aA~~ll~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~-~--~~~ke~~~~ 324 (751)
T 3eh1_A 266 TR------------ETHSALGPALQAAFKLMSPTG------GRVSVFQTQLPSLGAGLLQSREDPNQ-R--SSTKVVQHL 324 (751)
T ss_dssp CS------------CCCCCHHHHHHHHHHHHTTTC------EEEEEEECSCCCSSTTCCCCCCCSCG-G--GGSSSCTTC
T ss_pred CC------------CCccchHHHHHHHHHHhhcCC------CEEEEEecCCCCCCCCcccccccccc-C--CCchhhhhh
Confidence 32 367999999999999998764 89999999999999999999886653 3 234567899
Q ss_pred CcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCC-------cHHHHHHHHhccCccee
Q 012724 309 PEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS-------TLPQDIYRMLSRPYAFN 381 (457)
Q Consensus 309 ~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~-------~l~~dl~~~l~~~~~~~ 381 (457)
+++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+.+ +|.+||+|.|++++||+
T Consensus 325 ~~a~~fY~~la~~~~~~~i~VDlF~~s~~~~dlatl~~l~~~TGG~v~~y~~F~~~~~~~~~~~f~~dl~r~l~~~~gf~ 404 (751)
T 3eh1_A 325 GPATDFYKKLALDCSGQQTAVDLFLLSSQYSDLASLACMSKYSAGCIYYYPSFHYTHNPSQAEKLQKDLKRYLTRKIGFE 404 (751)
T ss_dssp SCSCSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHTTTCCEEECTTCBTTTBHHHHHHHHHHHHHHHHSCCEEE
T ss_pred cchHHHHHHHHHHHHhcCceEEEEEccCcccChHhHHHHHhhcCceEEEeCCcccccchhHHHHHHHHHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999753 79999999999999999
Q ss_pred eEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCC-CceeEEEEEEeeecCCCccc
Q 012724 382 CIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFA-RLHFNIQLLCLLRNFQVKDW 455 (457)
Q Consensus 382 ~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-~~~~~iQ~~~~y~~~~~~~~ 455 (457)
|+||||||+||+|++++||++.++ .+.|.++.+|++++|+|+|++++ ++. ...+|||++++||+.+|+-.
T Consensus 405 a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~~~~~~--~l~~~~~~~~Q~allYT~~~G~RR 475 (751)
T 3eh1_A 405 AVMRIRCTKGLSMHTFHGNFFVRS--TDLLSLANINPDAGFAVQLSIEE--SLTDTSLVCFQTALLYTSSKGERR 475 (751)
T ss_dssp EEEEEEECTTEEEEEEESSSEECS--SSEEEEEEECTTCCEEEEEEESS--CCCSCSEEEEEEEEEEECTTSCEE
T ss_pred eEEEEEecCCeEEEEeeCCeEeCC--CCceEeccCCCCCEEEEEEEEcC--CCCCCCceEEEEEEeeecCCCCEE
Confidence 999999999999999999999875 67899999999999999999964 453 57899999999999998754
No 2
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.1e-90 Score=753.69 Aligned_cols=422 Identities=21% Similarity=0.365 Sum_probs=374.3
Q ss_pred eeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCC-CcccCCCCCCCCCcCcceEEecCceEeC--ceEEEccCCC
Q 012724 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA-PVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (457)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~-p~~~~~~~~p~RC~~C~aYiNp~~~~~~--~~w~C~~C~~ 78 (457)
+||+|||+||.+++++++++||||++|+||++..+.+.+ |+++....+|+||++|||||||||+|+. ++|+||||++
T Consensus 45 ~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 124 (766)
T 3eh2_A 45 YIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSC 124 (766)
T ss_dssp TEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGGCCCBCTTTCCBCCTTCEEEGGGTEEECTTTCC
T ss_pred eEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCCCCCccCCCCCEeCCceEEecCCCEEEeccccc
Confidence 699999999999999999999999999999987765544 4555556789999999999999999984 7999999999
Q ss_pred CCCCChhhhccc------CCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHH
Q 012724 79 LNGLSSQAIARY------THPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (457)
Q Consensus 79 ~N~v~~~y~~~~------~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~ 149 (457)
.|++|++|++.. .+..+||||+.|+|||.+|.+|......+.||+|+||||+|..+ |++++++++|+++|+
T Consensus 125 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~si~~~L~ 204 (766)
T 3eh2_A 125 INDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYCKNNKFPSPPAFIFMIDVSYNAIRTGLVRLLCEELKSLLD 204 (766)
T ss_dssp EEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCCHHHhccccccccccccccCcccccCceeeecCHhhccCCCCCCCCEEEEEEECchhhccchHHHHHHHHHHHHHH
Confidence 999999987532 23678999999999999999997644456899999999999976 899999999999999
Q ss_pred hCCCC-------cEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHHHH
Q 012724 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (457)
Q Consensus 150 ~l~~~-------~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~l~ 220 (457)
.||++ ++|||||||++||||+++.+..+++++ ++.|++| ++|+ ++||+|++|+++.|+++|+
T Consensus 205 ~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~~~q~~---------vv~dl~d~f~P~~~~~lv~l~e~~~~i~~lL~ 275 (766)
T 3eh2_A 205 FLPREGGAEESAIRVGFVTYNKVLHFYNVKSSLAQPQMM---------VVSDVADMFVPLLDGFLVNVNESRAVITSLLD 275 (766)
T ss_dssp GCCCCSSCSSCCCEEEEEEESSSEEEEECCTTCSSCEEE---------EECCTTTCCCCCCTTSSBCTTTTHHHHHHHHH
T ss_pred hCCcccccCCccceEEEEEeCCEEEEEECCCCCCCceEE---------EecChhhhccccccceeEeHHHHHHHHHHHHH
Confidence 99964 899999999999999999876666654 3467888 5687 7899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCC-CCCCccccccccCccCCC
Q 012724 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (457)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (457)
+|++++.+.+ .+.+|+|+||++|+.+|+..+. ||||++|++|+|+ .|||+|+.+++++.+++
T Consensus 276 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~~----GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~s- 338 (766)
T 3eh2_A 276 QIPEMFADTR------------ETETVFVPVIQAGMEALKAAEC----AGKLFLFHTSLPIAEAPGKLKNRDDRKLINT- 338 (766)
T ss_dssp HHHHHHTTCC------------CCCCCSHHHHHHHHHHHHHTTC----CEEEEEEECSCCCSSSTTCCCCCCCGGGTTS-
T ss_pred hhhhhccCCC------------CCcchHHHHHHHHHHHhccCCC----CcEEEEEecCCCCcCCCcccccccccccCCC-
Confidence 9998754332 2578999999999999986432 4999999999787 79999999999888854
Q ss_pred CccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCC----CcHHHHHHHHhc
Q 012724 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDD----STLPQDIYRMLS 375 (457)
Q Consensus 300 ~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~----~~l~~dl~~~l~ 375 (457)
++|+.+++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+. ++|.+||+|.++
T Consensus 339 --dke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~d~~~f~~dl~~~l~ 416 (766)
T 3eh2_A 339 --DKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQYVDVATLSVVPQLTGGSVYKYASFQVENDQERFLSDLRRDVQ 416 (766)
T ss_dssp --TTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred --cchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCCCcChHHHHHHHhhcCceEEEeCCCcchhHHHHHHHHHHHHhh
Confidence 56778999999999999999999999999999999999999999999999999999999974 459999999999
Q ss_pred cCcceeeEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCC-CceeEEEEEEeeecCCCcc
Q 012724 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFA-RLHFNIQLLCLLRNFQVKD 454 (457)
Q Consensus 376 ~~~~~~~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-~~~~~iQ~~~~y~~~~~~~ 454 (457)
+++||+|+||||||+||+|+++|||+..++ .+.|.++.+|+++||+|+|++++ ++. ...+|||++++||+.+|+-
T Consensus 417 ~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--t~~~~l~~i~~d~s~~v~f~~~~--~l~~~~~~~~Q~allYt~~~G~R 492 (766)
T 3eh2_A 417 KVVGFDAVMRVRTSTGIRAVDFFGAFYMSN--TTDVELAGLDGDKTVTVEFKHDD--RLNEESGALLQCALLYTSCAGQR 492 (766)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEEESCBCSS--SSCEEEEEEETTCCEEEEEEESS--CCCTTTCEEEEEEEEEECTTSCE
T ss_pred hcceeeEEEEEEecCCeEEEEeECCeecCC--CCceeeccCCCCceEEEEEEecC--CCCCCCcEEEEEEEEeEcCCCCE
Confidence 999999999999999999999999999764 56799999999999999999964 454 6899999999999999875
Q ss_pred c
Q 012724 455 W 455 (457)
Q Consensus 455 ~ 455 (457)
.
T Consensus 493 R 493 (766)
T 3eh2_A 493 R 493 (766)
T ss_dssp E
T ss_pred E
Confidence 4
No 3
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=100.00 E-value=1.3e-90 Score=753.49 Aligned_cols=422 Identities=20% Similarity=0.354 Sum_probs=373.6
Q ss_pred eeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCC-CcccCCCCCCCCCcCcceEEecCceEeC--ceEEEccCCC
Q 012724 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAA-PVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCGS 78 (457)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~-p~~~~~~~~p~RC~~C~aYiNp~~~~~~--~~w~C~~C~~ 78 (457)
+||+|||+||.+++++++++||||++|+||++..+.+.| |+++...++|+||++|||||||||+|+. ++|+||||++
T Consensus 49 ~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~ 128 (770)
T 3efo_B 49 FIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNC 128 (770)
T ss_dssp TEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTTCSCBCTTTCCBSCTTCEEEGGGTEEECTTTCC
T ss_pred eEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCCCCCccCCCCCCcCCceEEecCCCEEEeccccc
Confidence 699999999999999999999999999999998766554 5666667889999999999999999984 7999999999
Q ss_pred CCCCChhhhcccC------CCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHH
Q 012724 79 LNGLSSQAIARYT------HPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALE 149 (457)
Q Consensus 79 ~N~v~~~y~~~~~------~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~ 149 (457)
.|++|++|++..+ +..+||||++|+|||++|.+|......+.||+|+||||+|..+ |++++++++|+++|+
T Consensus 129 ~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~~~~~~p~pp~y~FvIDvs~~av~sg~l~~~~~sl~~~L~ 208 (770)
T 3efo_B 129 VNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYCRKSKPPNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLE 208 (770)
T ss_dssp EEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGSGGGSCCCCCEEEEEEECSHHHHHTTHHHHHHHHHHHHGG
T ss_pred cCCCchHhhccccccccccccccCcccccCceeeecCHHHhccCCCCCCcEEEEEEEcchhhccchHHHHHHHHHHHHHH
Confidence 9999999875432 3567999999999999999997533456899999999999975 799999999999999
Q ss_pred hCCCC-------cEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHHHH
Q 012724 150 AVPSG-------ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSALE 220 (457)
Q Consensus 150 ~l~~~-------~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~l~ 220 (457)
.||++ ++|||||||++||||+++....++++++ +.|++| ++|+ ++||+|++|+++.|+++|+
T Consensus 209 ~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q~q~~v---------v~d~~d~f~P~~~~~Lv~l~e~~~~i~~lL~ 279 (770)
T 3efo_B 209 KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQPQMMV---------VTDVGEVFVPLLDGFLVNYQESQSVIHNLLD 279 (770)
T ss_dssp GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSSCEEEE---------ECCTTSCCCCCSSSSSBCTTTTHHHHHHHHH
T ss_pred hCCccccccCccceEEEEEeCCEEEEEeCCCcccCceEEE---------ecccccccCCCccceeeeHHHHHHHHHHHHH
Confidence 99964 8999999999999999988776666643 457777 5787 7899999999999999999
Q ss_pred hcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCC-CCCCccccccccCccCCC
Q 012724 221 TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPD-HGAGQLDTRRYGEQYASK 299 (457)
Q Consensus 221 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt-~GpG~l~~~~~~~~~~~~ 299 (457)
+|++++.+.+ .+.+|+|+||++|+.+|+..+. ||||++|++|+|+ .|||+|+.|++++.+++
T Consensus 280 ~L~~~~~~~~------------~~~t~~g~al~aa~~~l~~~~~----GGkI~~F~s~lP~t~GpG~l~~r~~~~~~~t- 342 (770)
T 3efo_B 280 QIPDMFADSN------------ENETVFAPVIQAGMEALKAADC----PGKLFIFHSSLPTAEAPGKLKNRDDKKLVNT- 342 (770)
T ss_dssp HHHHHHHTCC------------CCCCCCHHHHHHHHHHHHHHTC----CEEEEEEECSCCCSSSTTCCCCCCCCCCSSC-
T ss_pred hhHhhccCCC------------CCcchHHHHHHHHHHHhccCCC----CcEEEEEecCCCCcCCCccccccccccccCC-
Confidence 9988753332 2578999999999999986421 4999999999777 89999999999888854
Q ss_pred CccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCC----CCcHHHHHHHHhc
Q 012724 300 GEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTD----DSTLPQDIYRMLS 375 (457)
Q Consensus 300 ~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~----~~~l~~dl~~~l~ 375 (457)
++|+.+++++++||++||++|+++||+||+|+++.+|+|+++|+.|++.|||.+++|++|+ .++|.+||+|.++
T Consensus 343 --~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~~vdlatl~~l~~~TGG~v~~y~~F~~~~~~~~f~~dl~~~l~ 420 (770)
T 3efo_B 343 --DKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQYVDVASLGLVPQLTGGTLYKYNNFQMHLDRQQFLNDLRNDIE 420 (770)
T ss_dssp --SCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSSCCCHHHHTHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred --cchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCCccChHHHHHHHhhcCceEEEecCCcchhHHHHHHHHHHHhhh
Confidence 5778899999999999999999999999999999999999999999999999999999997 4579999999999
Q ss_pred cCcceeeEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCC-CceeEEEEEEeeecCCCcc
Q 012724 376 RPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFA-RLHFNIQLLCLLRNFQVKD 454 (457)
Q Consensus 376 ~~~~~~~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~-~~~~~iQ~~~~y~~~~~~~ 454 (457)
+++||+|+||||||+|++|+++|||+..++ .+.|.++.+|++++|+|+|++++ ++. ...+|||++++||+.+|+-
T Consensus 421 ~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--t~~~~l~~~~~d~s~~v~f~~~~--~l~~~~~~~~Q~allYt~~~G~R 496 (770)
T 3efo_B 421 KKIGFDAIMRVRTSTGFRATDFFGGILMNN--TTDVEMAAIDCDKAVTVEFKHDD--KLSEDSGALIQCAVLYTTISGQR 496 (770)
T ss_dssp SCEEEEEEEEEEECTTEEEEEEESSCBCSS--SSCEEEEEEESSCCEEEEEEESS--CCBTTTBEEEEEEEEEECTTCCE
T ss_pred hceeeeEEEEEEecCCeEEEEeECCeeCCC--CCceEecccCcCceEEEEEEecC--CCCCCCcEEEEEEEEEEcCCCCE
Confidence 999999999999999999999999998764 56799999999999999999964 453 5689999999999999875
Q ss_pred c
Q 012724 455 W 455 (457)
Q Consensus 455 ~ 455 (457)
.
T Consensus 497 R 497 (770)
T 3efo_B 497 R 497 (770)
T ss_dssp E
T ss_pred E
Confidence 4
No 4
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=100.00 E-value=2.6e-88 Score=742.99 Aligned_cols=417 Identities=19% Similarity=0.371 Sum_probs=362.8
Q ss_pred CeeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCC-CCcccCCCCCCCCCcCcceEEecCceEeC--ceEEEccCC
Q 012724 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGA-APVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCG 77 (457)
Q Consensus 1 ~~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~-~p~~~~~~~~p~RC~~C~aYiNp~~~~~~--~~w~C~~C~ 77 (457)
.+||+|||+||.+++++++++||||++|+||++..+.+. +|++. ...|+||++|+|||||||+|+. ++|+||||+
T Consensus 180 ~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~--~~~pvRC~rCrAYiNPf~~~~~~g~~W~CnfC~ 257 (926)
T 1m2v_B 180 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCR 257 (926)
T ss_dssp TTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC--SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTC
T ss_pred CceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccC--CCCCCccCCccCEecCceEEeCCCCEEEccCCC
Confidence 379999999999999999999999999999998654333 34442 3459999999999999999994 799999999
Q ss_pred CCCCCChhhhc----ccCCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHh
Q 012724 78 SLNGLSSQAIA----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA 150 (457)
Q Consensus 78 ~~N~v~~~y~~----~~~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~ 150 (457)
+.|++|++|+. ...++.+||||++++|||++|++|..+. +.+|+||||||+|..+ +++++++++|+.+|+.
T Consensus 258 ~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~~r~--p~ppvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~ 335 (926)
T 1m2v_B 258 LANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQ--PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS 335 (926)
T ss_dssp CEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGCSSC--CCCCBEEEEEECSHHHHHSCHHHHHHHHHHHTTTT
T ss_pred CCCCCchhhccccccCccccccCccccCceEEEEcChhhccCC--CCCcEEEEEEECCHHHHhhhHHHHHHHHHHHHHHh
Confidence 99999998761 1113577899999999999999997653 5789999999999975 6799999999999999
Q ss_pred CCC---CcEEEEEEecceeEEEEccCCCc-------ceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHH
Q 012724 151 VPS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSA 218 (457)
Q Consensus 151 l~~---~~~vglItf~~~V~~y~l~~~~~-------~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~ 218 (457)
||+ +++|||||||+.||||+++.+.. +.++ .++.|++| ++|+ ++||++++|+++.|+++
T Consensus 336 LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qm---------lvvsdl~d~f~P~~~~~Lv~l~e~~~~I~~l 406 (926)
T 1m2v_B 336 IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETL 406 (926)
T ss_dssp SCCTTSCCEECEEEESSSEEEEECCCC---------CCEE---------EEECCCSSCCCSCSSSSSEETTTTHHHHHHH
T ss_pred CCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhh---------ccccccccccCCCcccccccHHHHHHHHHHH
Confidence 986 79999999999999999987543 2333 24567777 4666 78999999999999999
Q ss_pred HHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCccccccccCccCC
Q 012724 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYAS 298 (457)
Q Consensus 219 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~ 298 (457)
|++|++++... +++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.++++++.
T Consensus 407 Le~L~~~~~~~------------~~~~~~~G~AL~aA~~lL~~~G------GrI~~F~sg~Pt~GpG~l~~re~~~~~-- 466 (926)
T 1m2v_B 407 LTKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGVV-- 466 (926)
T ss_dssp HHHHHHHTSSC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCCCCC------
T ss_pred HHhhhhhhcCC------------CCCCccHHHHHHHHHHHHHhhC------CEEEEEecCCCCCCCCccccccccccc--
Confidence 99998865322 1478999999999999999765 899999999999999999999887543
Q ss_pred CCcccccc-CCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCC------cHHHHHH
Q 012724 299 KGEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIY 371 (457)
Q Consensus 299 ~~~~~~~~-~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~------~l~~dl~ 371 (457)
++++|+. +++++.+||++||.+|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.+ +|..|+.
T Consensus 467 -~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~vdla~l~~l~~~TGG~v~~y~~F~~~~~~d~~kf~~dl~ 545 (926)
T 1m2v_B 467 -NTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFA 545 (926)
T ss_dssp -CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEESCCTTSHHHHHHHHHHHH
T ss_pred -CcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCCcChHHHHHHHhcCCceEEEcCCCcchhhhHHHHHHHHHH
Confidence 5667776 9999999999999999999999999999999999999999999999999999999764 6889999
Q ss_pred HHhccCcceeeEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCCCceeEEEEEEeeecCC
Q 012724 372 RMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQ 451 (457)
Q Consensus 372 ~~l~~~~~~~~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~iQ~~~~y~~~~ 451 (457)
+.|++++||+|+||||||+||+|++++||++.++ +++|+++.+++++||+|+|++++ ++....+|||++++||+.+
T Consensus 546 ~~Lt~~~gf~a~mrVR~S~glkv~~~~G~~~~~~--s~~~~l~~l~~d~s~av~f~~~~--~l~~~~~~~Q~allYT~~~ 621 (926)
T 1m2v_B 546 KHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIMADYCYVQVAVLLSLNN 621 (926)
T ss_dssp HHHHSCCEEEEEEEEEECTTEEEEEEESSSBCSS--TTEEEEEEECSSCCEEEEEEECS--BCCSSEEEEEEEEEEEETT
T ss_pred HHhhhhhceeEEEEEEeCCCcEEEEeecCccccC--cCceEeeccCCCCEEEEEEEecc--CCCCCcEEEEEEEEEEcCC
Confidence 9999999999999999999999999999999754 78999999999999999999975 4567889999999999999
Q ss_pred Cccc
Q 012724 452 VKDW 455 (457)
Q Consensus 452 ~~~~ 455 (457)
|+..
T Consensus 622 G~RR 625 (926)
T 1m2v_B 622 SQRR 625 (926)
T ss_dssp TEEE
T ss_pred CCEE
Confidence 8754
No 5
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=100.00 E-value=3.6e-88 Score=738.66 Aligned_cols=417 Identities=19% Similarity=0.371 Sum_probs=348.7
Q ss_pred CeeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCC-CCcccCCCCCCCCCcCcceEEecCceEeC--ceEEEccCC
Q 012724 1 MAVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGA-APVYGSDGHMLPRCENCYAYFNTYCELEQ--WAWTCSLCG 77 (457)
Q Consensus 1 ~~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~-~p~~~~~~~~p~RC~~C~aYiNp~~~~~~--~~w~C~~C~ 77 (457)
.+||+|||+||.+++++++++||||++|+||++..+.+. +|++. ...|+||++|+|||||||+|+. ++|+||||+
T Consensus 64 ~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~--~~~pvRC~~CrayiNPf~~~~~~g~~W~C~~C~ 141 (810)
T 1pcx_A 64 DYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCR 141 (810)
T ss_dssp TTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEEC--SCCCCBCTTTCCBCCTTCEEETTTTEEECTTTC
T ss_pred CceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccC--CCCCCccCCccCEecCceEEeCCCCEEEccCCC
Confidence 379999999999999999999999999999998754333 34442 3459999999999999999994 799999999
Q ss_pred CCCCCChhhhc----ccCCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCCh---hHHHHHHHHHHHHHHh
Q 012724 78 SLNGLSSQAIA----RYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSE---EFLELTRSALQAALEA 150 (457)
Q Consensus 78 ~~N~v~~~y~~----~~~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~ 150 (457)
+.|++|++|+. ...++.+||||++++|||++|++|..++ +.+|+|+||||+|..+ |++++++++|+++|+.
T Consensus 142 ~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~~~~--p~pp~yvFvIDvs~~av~~g~l~~~~~si~~~L~~ 219 (810)
T 1pcx_A 142 LANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYTLRQ--PPPATYCFLIDVSQSSIKSGLLATTINTLLQNLDS 219 (810)
T ss_dssp CEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGCSSC--CCCCEEEEEEECSHHHHHHTHHHHHHHHHHHHTTT
T ss_pred CcCCCchhhccccccCccccccCccccCceEEEEcCchhccCC--CCCcEEEEEEECChHHHhhhHHHHHHHHHHHHHHh
Confidence 99999998861 1123677899999999999999997653 5799999999999975 6799999999999999
Q ss_pred CCC---CcEEEEEEecceeEEEEccCCCc-------ceeeeeeCCCCCccccccccc-cccc-cccccchHhHHHHHHHH
Q 012724 151 VPS---GALFGLATFSHKIGLYDVQGAIP-------VVKNVFIPSDTEDTLSLELED-VMPL-SQFLAPVETFKENITSA 218 (457)
Q Consensus 151 l~~---~~~vglItf~~~V~~y~l~~~~~-------~~~~v~~~~~~~~~v~~dl~~-~~p~-~~~l~~~~~~~~~i~~~ 218 (457)
||+ +++|||||||+.||||+++.... +.++ .++.|++| ++|+ ++||++++|+++.|+++
T Consensus 220 Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~m---------lvv~dl~d~f~P~~~~~Lv~l~e~~~~i~~l 290 (810)
T 1pcx_A 220 IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINM---------MDIADLEEPFLPRPNSMVVSLKACRQNIETL 290 (810)
T ss_dssp SCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEE---------ECCCCTTCC-----TTTSEETTTTHHHHHHH
T ss_pred CCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhh---------ccccccccccCCCcccccccHHHHHHHHHHH
Confidence 986 79999999999999999986543 2333 34567777 4666 78999999999999999
Q ss_pred HHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCccccccccCccCC
Q 012724 219 LETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQYAS 298 (457)
Q Consensus 219 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~ 298 (457)
|++|++++... +++.+|+|+||++|..+|+..| |||++|++|+||.|||+|+.++++++.
T Consensus 291 L~~L~~~~~~~------------~~~~~a~G~AL~~A~~lL~~~G------GrI~~F~sg~pt~GpG~l~~r~~~~~~-- 350 (810)
T 1pcx_A 291 LTKIPQIFQSN------------LITNFALGPALKSAYHLIGGVG------GKIIVVSGTLPNLGIGKLQRRNESGVV-- 350 (810)
T ss_dssp HHHHHHHTTTC------------CCCCCCHHHHHHHHHHHHTTTC------EEEEEEESSCCCSSTTCCCC---------
T ss_pred HHhhhhhccCC------------CCCCccHHHHHHHHHHHHHhcC------CEEEEEecCCCCCCCCccccccccccc--
Confidence 99998865322 1478999999999999998765 899999999999999999999887543
Q ss_pred CCcccccc-CCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCC------cHHHHHH
Q 012724 299 KGEDADRA-LLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDS------TLPQDIY 371 (457)
Q Consensus 299 ~~~~~~~~-~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~------~l~~dl~ 371 (457)
++++|+. +++++.+||++||.+|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.+ +|..|+.
T Consensus 351 -~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~~dla~l~~l~~~TGG~v~~y~~F~~~~~~d~~~f~~dl~ 429 (810)
T 1pcx_A 351 -NTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDYMDVASLSNLSRFTAGQTHFYPGFSGKNPNDIVKFSTEFA 429 (810)
T ss_dssp --------------CCHHHHHHHHHHHTTEEEEEEEEESSCCCHHHHHHHHHTTTCCEEEEETCCTTSHHHHHHHHHHHH
T ss_pred -CcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCccChHHHHHHHhcCCcEEEEcCCCcchhhHHHHHHHHHHH
Confidence 5667776 9999999999999999999999999999999999999999999999999999999764 6889999
Q ss_pred HHhccCcceeeEEEEEcCCCeeEeEeeeccccCCCCCCceEEeeeCCCceEEEEEEEecCCCCCCceeEEEEEEeeecCC
Q 012724 372 RMLSRPYAFNCIMRLRTSSEFKPGHSYGHFFPDPQYENVQHIICCDSYATYAYDFDFANAAGFARLHFNIQLLCLLRNFQ 451 (457)
Q Consensus 372 ~~l~~~~~~~~~lrvR~S~gl~i~~~~G~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~~~~iQ~~~~y~~~~ 451 (457)
+.|++++||+|+||||||+||+|++++||++.++ ++.|+++.+++++||+|+|++++ ++....+|||++++||+.+
T Consensus 430 ~~l~~~~gf~a~mrVR~S~gl~v~~~~G~~~~~~--~~~~~l~~~~~d~s~~v~f~~~~--~l~~~~~~~Q~allYt~~~ 505 (810)
T 1pcx_A 430 KHISMDFCMETVMRARGSTGLRMSRFYGHFFNRS--SDLCAFSTMPRDQSYLFEVNVDE--SIMADYCYVQVAVLLSLNN 505 (810)
T ss_dssp HHHHCCCCEEEEEEEEECTTEEEEEEESSSBCSS--SSEEEESSCCSSCCEEEEEEECS--CCCSSEEEEEEEEEEECTT
T ss_pred HHhhhhcceeEEEEEEcCCCeEEEEeecCccccC--cCceEeecCCCCCEEEEEEEecc--CCCCCcEEEEEEEEEEcCC
Confidence 9999999999999999999999999999999864 78999999999999999999975 4567889999999999999
Q ss_pred Cccc
Q 012724 452 VKDW 455 (457)
Q Consensus 452 ~~~~ 455 (457)
|+-.
T Consensus 506 G~RR 509 (810)
T 1pcx_A 506 SQRR 509 (810)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 8754
No 6
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=100.00 E-value=6.4e-87 Score=726.73 Aligned_cols=429 Identities=26% Similarity=0.371 Sum_probs=363.5
Q ss_pred eeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCCCcccCCCCCCCCCcC--cceEEecCceEeC--ceEEEccCC
Q 012724 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (457)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~p~~~~~~~~p~RC~~--C~aYiNp~~~~~~--~~w~C~~C~ 77 (457)
+||+|||+||.+++++++++||||++|+||++..+ +|++. ++|+||++ |+|||||||+|+. ++|+||||+
T Consensus 11 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~---~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 84 (768)
T 1m2o_A 11 GVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDE---LNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICN 84 (768)
T ss_dssp SEEESBSEEESSHHHHHHTCSCSEEEECTTCCCTT---CCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEECCTTTC
T ss_pred ceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCCC---CCcCC---CCCCccCCCCCCeEECCceEEeCCCCEEEcccCC
Confidence 79999999999999999999999999999997532 45543 47999999 9999999999984 799999999
Q ss_pred CCCCCChhhhcccCCCCCccccccccEEEEecCCCCccccCCCCcEEEEEEECCCChhHHHHHHHHHHHHHHhCCCCcEE
Q 012724 78 SLNGLSSQAIARYTHPQSCAEMISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGALF 157 (457)
Q Consensus 78 ~~N~v~~~y~~~~~~~~~~pEL~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~~~~~v 157 (457)
+.|++|++|. ..+..+.+|||++++|||++|.. .+.+|+|+||||+|.+++++++++++|+++|+.||++++|
T Consensus 85 ~~N~~P~~y~-~~~~~~~~pEL~~~tvEy~~p~~------~~~pp~~vFvIDvs~~~~~l~~l~~sl~~~L~~Lp~~~~V 157 (768)
T 1m2o_A 85 SRNHLPPQYT-NLSQENMPLELQSTTIEYITNKP------VTVPPIFFFVVDLTSETENLDSLKESIITSLSLLPPNALI 157 (768)
T ss_dssp CCCBCCGGGC-C---CCCCGGGTCSEEEEECSCC------CCSCCEEEEEEECCSCHHHHHHHHHHHHHHHHTSCTTCEE
T ss_pred CCCCCChHHc-cCCcccCChhhccCCEEEECCCC------CCCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 9999999976 34445668999999999999973 3578999999999999999999999999999999999999
Q ss_pred EEEEecceeEEEEccCCCcceeeeeeCCCCCc-------cc--cc-----cc-----cc-ccc----ccccccchHhHHH
Q 012724 158 GLATFSHKIGLYDVQGAIPVVKNVFIPSDTED-------TL--SL-----EL-----ED-VMP----LSQFLAPVETFKE 213 (457)
Q Consensus 158 glItf~~~V~~y~l~~~~~~~~~v~~~~~~~~-------~v--~~-----dl-----~~-~~p----~~~~l~~~~~~~~ 213 (457)
||||||+.||||+++.......+|+.+ +++. .+ +. ++ ++ +.| .++||+|++|+++
T Consensus 158 GlITf~~~V~~y~l~~~~~~~~~V~~g-~k~~~~~q~~~~l~~l~~~~~~~~~~~~~~~~f~p~~~~~~~~lv~l~e~~~ 236 (768)
T 1m2o_A 158 GLITYGNVVQLHDLSSETIDRCNVFRG-DREYQLEALTEMLTGQKPTGPGGAASHLPNAMNKVTPFSLNRFFLPLEQVEF 236 (768)
T ss_dssp EEEEESSEEEECCCSSSSSEEEEEEET-TSCCCHHHHHHHHHSCCCC---------------CCSSSGGGGSEEHHHHHH
T ss_pred EEEEECCEEEEEECCCCCCcceeeecC-CccccHHHHHHHHhhccccccCCccccccccccccccCCccceeeeHHHHHH
Confidence 999999999999999877666777764 2221 11 11 22 34 233 4789999999999
Q ss_pred HHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCcccccccc
Q 012724 214 NITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYG 293 (457)
Q Consensus 214 ~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~ 293 (457)
.|+++|++|+++ .|....+ +++.||+|+||++|..+|+...++ .||||++|++|+||.|||+|+.++++
T Consensus 237 ~i~~lL~~L~~~-~~~~~~~--------~~~~~~~G~Al~~A~~ll~~~~~~--~GGrI~~F~sg~pt~GpG~l~~r~~~ 305 (768)
T 1m2o_A 237 KLNQLLENLSPD-QWSVPAG--------HRPLRATGSALNIASLLLQGCYKN--IPARIILFASGPGTVAPGLIVNSELK 305 (768)
T ss_dssp HHHHHHHTCCCS-CSCCCTT--------BCCCCCHHHHHHHHHHHHHHHCTT--SCCEEEEEESSCCCSSSSCCSCSBTT
T ss_pred HHHHHHHhcccc-ccccCCC--------CCCcccHHHHHHHHHHHHhhccCC--CCcEEEEEeCCCCCCCCccccccccc
Confidence 999999999884 2332221 247899999999999999854221 15999999999999999999999999
Q ss_pred CccCCCC-cccc-ccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCCcHHHHHH
Q 012724 294 EQYASKG-EDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIY 371 (457)
Q Consensus 294 ~~~~~~~-~~~~-~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl~ 371 (457)
+.+|+|. ++++ +++++++.+||++||++|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.++|.++++
T Consensus 306 ~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~~dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~ 385 (768)
T 1m2o_A 306 DPLRSHHDIDSDHAQHYKKACKFYNQIAQRVAANGHTVDIFAGCYDQIGMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYL 385 (768)
T ss_dssp SCCCCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCSHHHHHHHHHHHTCCEEEESCTTSHHHHHHHH
T ss_pred cccccccccccchhhhcCchHHHHHHHHHHHHHCCeEEEEEEccCCccChHHHhhHhhcCCceEEEcCCCchHHHHHHHH
Confidence 9998864 3444 6889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc------CcceeeEEEEEcCCCeeEeEeeeccccCCC--------------CCCceEEeeeCCCceEEEEEEEecC
Q 012724 372 RMLSR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQ--------------YENVQHIICCDSYATYAYDFDFANA 431 (457)
Q Consensus 372 ~~l~~------~~~~~~~lrvR~S~gl~i~~~~G~~~~~~~--------------~~~~~~~~~~~~~~s~~~~~~~~~~ 431 (457)
|.|++ ++||+|+||||||+||+|++++||++..++ ..+.|+++.+|+++||+|+|++++.
T Consensus 386 r~l~~~~~~~~~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~~vsd~~ig~~~t~~~~l~~~~~d~t~~v~f~~~~~ 465 (768)
T 1m2o_A 386 RLFAKDEEGYLKMAFNGNMAVKTSKDLKVQGLIGHASAVKKTDANNISESEIGIGATSTWKMASLSPYHSYAIFFEIANT 465 (768)
T ss_dssp HTTCBCTTSSBSCEEEEEEEEEECTTEEEEEEESSCEECCSCCCSCBCSSCSSBCSCSEEEEEEECTTCCEEEEEEECCC
T ss_pred HHHhhccccccceEEEEEEEEEecCCceEEEeecCccccccccccccCcceeccCCCceEEeecCCCCCEEEEEEEeccc
Confidence 99998 689999999999999999999999996542 1357999999999999999999865
Q ss_pred CCC------------CCceeEEEEEEeeecCCCccc
Q 012724 432 AGF------------ARLHFNIQLLCLLRNFQVKDW 455 (457)
Q Consensus 432 ~~l------------~~~~~~iQ~~~~y~~~~~~~~ 455 (457)
... +...+|||++++||+.+|+-.
T Consensus 466 ~~~~~~~~~~~l~~~~~~~~~iQ~a~lYt~~~G~rr 501 (768)
T 1m2o_A 466 AANSNPMMSAPGSADRPHLAYTQFITTYQHSSGTNR 501 (768)
T ss_dssp -----------------CEEEEEEEEEEEETTTEEE
T ss_pred cccccccccccccccCCCcEEEEEEEEEEcCCCCEE
Confidence 321 357899999999999988753
No 7
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=100.00 E-value=2e-85 Score=714.29 Aligned_cols=429 Identities=22% Similarity=0.288 Sum_probs=366.1
Q ss_pred eeecccCccCCCHHHHHhcCCceEEEEccCCCCCCCCCCCcccCCCCCCCCCcC--cceEEecCceEeC--ceEEEccCC
Q 012724 2 AVRATVSRFPSDPDAQEASGLPWGVTVTPFATKDENGAAPVYGSDGHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCG 77 (457)
Q Consensus 2 ~vR~T~~~~P~~~~~~~~~~lPlg~vv~Pf~~~~~~~~~p~~~~~~~~p~RC~~--C~aYiNp~~~~~~--~~w~C~~C~ 77 (457)
+||+|||+||.+++++++++||||++|+||++.++ +|++. ++|+||++ |+|||||||+|+. ++|+||||+
T Consensus 20 ~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~~---~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W~C~~C~ 93 (769)
T 2nut_A 20 GVRFSWNVWPSSRLEATRMVVPVAALFTPLKERPD---LPPIQ---YEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCY 93 (769)
T ss_dssp SEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCSC---CCCBC---SCCCBCSSTTCCCBCCTTSEEETTTTEEECSSSC
T ss_pred cccceeccCCCChHHHhcccCCeEEEEeeCCCCCC---CCcCC---CCCCcCCCCCCCeEECCceEEeCCCCEEEccCCC
Confidence 79999999999999999999999999999997532 44443 47999999 9999999999984 699999999
Q ss_pred CCCCCChhhhcccCCCCCcccc--ccccEEEEecCCCCccccCCCCcEEEEEEECCCChhHHHHHHHHHHHHHHhCCCCc
Q 012724 78 SLNGLSSQAIARYTHPQSCAEM--ISSFIDLDLPLEGSEEETMQARPVYVAAVDLSSSEEFLELTRSALQAALEAVPSGA 155 (457)
Q Consensus 78 ~~N~v~~~y~~~~~~~~~~pEL--~~~~ve~~~~~~~~~~~~~~~~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~~~~ 155 (457)
+.|++|++|+ .....+.+||| ++++|||++|++| +.+|+|+||||+|.++..+++++++|+++|+.||+++
T Consensus 94 ~~N~~P~~Y~-~~~~~~~~pEL~p~~~tvEy~~~~~~------p~pp~~vFvIDvS~~a~~l~~l~~si~~~L~~Lp~~~ 166 (769)
T 2nut_A 94 QRNQFPPSYA-GISELNQPAELLPQFSSIEYVVLRGP------QMPLIFLYVVDTCMEDEDLQALKESMQMSLSLLPPTA 166 (769)
T ss_dssp CEEECCGGGT-TCBTTBCCGGGSGGGSSEEEEECSSC------CCCCEEEEEEECCSCHHHHHHHHHHHHHHHTTSCTTC
T ss_pred CCCCCChHHc-cCCcccCChhhcCCCCcEEEEccCCC------CCCCEEEEEEECCccHHHHHHHHHHHHHHHHhCCCCc
Confidence 9999999986 34445678999 8999999999876 4689999999999999999999999999999999999
Q ss_pred EEEEEEecceeEEEEccCCCcceeeeeeCCCCCc--------ccccc----c-----ccc--ccccccccchHhHHHHHH
Q 012724 156 LFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTED--------TLSLE----L-----EDV--MPLSQFLAPVETFKENIT 216 (457)
Q Consensus 156 ~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~--------~v~~d----l-----~~~--~p~~~~l~~~~~~~~~i~ 216 (457)
+|||||||+.||||+++.+....++|+.+. ++. .++.| + +|+ +|+++||+|++|+++.|+
T Consensus 167 ~VGlITf~~~v~~y~l~~~~~~~~~vf~G~-k~~~~~q~~~ml~v~d~~~~~~~~~~~~~f~~p~~~~lv~~~e~~~~i~ 245 (769)
T 2nut_A 167 LVGLITFGRMVQVHELGCEGISKSYVFRGT-KDLSAKQLQEMLGLSKVPVTQATRGPQVQQPPPSNRFLQPVQKIDMNLT 245 (769)
T ss_dssp EEEEEEESSEEEEEESSCCSSCEEEEEETT-SCCCSHHHHHHHC-------------------CCCSSSEEHHHHHHHHH
T ss_pred eEEEEEeCCEEEEEeCCCCCCccceeecCC-ccccHHHHHHHhCCCCcccccccccccccCCCcccceeeeHHHHHHHHH
Confidence 999999999999999998877778888753 221 11332 2 453 577899999999999999
Q ss_pred HHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCCCCccccccccCcc
Q 012724 217 SALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHGAGQLDTRRYGEQY 296 (457)
Q Consensus 217 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~ 296 (457)
++|++|++. .|....+ +++.+|+|+||++|..+|+...++ .||||++|++|+||.|||+|+.+++++.+
T Consensus 246 ~lLe~L~~~-~~~~~~~--------~~~~~a~G~Al~~A~~lL~~~~~~--~GGrI~~F~sg~pt~GpG~l~~r~~~~~~ 314 (769)
T 2nut_A 246 DLLGELQRD-PWPVPQG--------KRPLRSSGVALSIAVGLLECTFPN--TGARIMMFIGGPATQGPGMVVGDELKTPI 314 (769)
T ss_dssp HHHHHCCCC-SSCCCTT--------BCCCCCHHHHHHHHHHHHHHHSCS--SCCEEEEEESSCCCSSSSCCSCSBTTSCC
T ss_pred HHHHhcccc-cccccCC--------CCCccchHHHHHHHHHHHhhcccC--CCcEEEEEeCCCCCCCCCCCcCccccccc
Confidence 999999884 2332221 247899999999999999954222 15999999999999999999999999999
Q ss_pred CCCC-cccc-ccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEeCCCCCCcHHHHHHHHh
Q 012724 297 ASKG-EDAD-RALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLYSSTDDSTLPQDIYRML 374 (457)
Q Consensus 297 ~~~~-~~~~-~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~~~~~~~~l~~dl~~~l 374 (457)
|+|. +++| +++++++.+||++||++|+++||+||+|+++.+++|+++|+.|++.|||.+++|++|+.++|.++|+|.|
T Consensus 315 rs~~d~~ke~~~~~~~a~~fY~~la~~~~~~gi~VDlF~~~~~~vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~ 394 (769)
T 2nut_A 315 RSWHDIDKDNAKYVKKGTKHFEALANRAATTGHVIDIYACALDQTGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVF 394 (769)
T ss_dssp CCHHHHHTTCCTTHHHHHHHHHHHHHHHHHHTCEEEEEEECSSCCCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTT
T ss_pred ccccccccchhhhccchHHHHHHHHHHHHHCCeEEEEEeccCCccChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHH
Confidence 8764 4555 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc------CcceeeEEEEEcCCCeeEeEeeeccccCCCC-------------CCceEEeeeCCCceEEEEEEEecCCC--
Q 012724 375 SR------PYAFNCIMRLRTSSEFKPGHSYGHFFPDPQY-------------ENVQHIICCDSYATYAYDFDFANAAG-- 433 (457)
Q Consensus 375 ~~------~~~~~~~lrvR~S~gl~i~~~~G~~~~~~~~-------------~~~~~~~~~~~~~s~~~~~~~~~~~~-- 433 (457)
++ ++||+|+||||||+||+|++++||++..+++ .+.|+++.+|+++||+|+|++++...
T Consensus 395 ~~~~~~~l~~gf~a~mrVr~S~gl~v~~~~G~~~~~~~~~~~vsd~~~g~~~t~~~~l~~~~~d~s~~v~f~~~~~~~~~ 474 (769)
T 2nut_A 395 TKDMHGQFKMGFGGTLEIKTSREIKISGAIGPCVSLNSKGPCVSENEIGTGGTCQWKICGLSPTTTLAIYFEVVNQHNAP 474 (769)
T ss_dssp CBCTTSCBSCEEEEEEEEEECTTEEEEEEESSCEECCCCCTTBCSSCCSBCSCSEEEEEEECTTCCEEEEEEEC------
T ss_pred hhhcccccceEEEEEEEEEecCCeEEEeeeccccccccccCccccceeccCCCceEEeecCCCCCEEEEEEEecCccccc
Confidence 98 6899999999999999999999999864322 35799999999999999999986432
Q ss_pred C-CCceeEEEEEEeeecCCCccc
Q 012724 434 F-ARLHFNIQLLCLLRNFQVKDW 455 (457)
Q Consensus 434 l-~~~~~~iQ~~~~y~~~~~~~~ 455 (457)
+ +...+|||++++||+.+|+-.
T Consensus 475 l~~~~~~~~Q~a~lYt~~~G~rR 497 (769)
T 2nut_A 475 IPQGGRGAIQFVTQYQHSSGQRR 497 (769)
T ss_dssp ----CCEEEEEEEEEEETTSCEE
T ss_pred cCCCCeEEEEEEEEEECCCCCEE
Confidence 3 468899999999999998753
No 8
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=99.46 E-value=1.3e-14 Score=104.33 Aligned_cols=41 Identities=22% Similarity=0.557 Sum_probs=37.6
Q ss_pred CCCCCCCcC--cceEEecCceEeC--ceEEEccCCCCCCCChhhh
Q 012724 47 GHMLPRCEN--CYAYFNTYCELEQ--WAWTCSLCGSLNGLSSQAI 87 (457)
Q Consensus 47 ~~~p~RC~~--C~aYiNp~~~~~~--~~w~C~~C~~~N~v~~~y~ 87 (457)
.++|+||++ |+|||||||+|+. ++|+||||++.|++|++|+
T Consensus 6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~~P~~Y~ 50 (59)
T 2yrc_A 6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYA 50 (59)
T ss_dssp CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEECCSCCS
T ss_pred CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCCCCHHHh
Confidence 568999999 9999999999994 6999999999999999864
No 9
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=99.24 E-value=2.8e-09 Score=109.85 Aligned_cols=250 Identities=11% Similarity=0.029 Sum_probs=164.8
Q ss_pred EEEEEEECCCChh----HHHHHHHHHHHHHHhCCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcccccccccc
Q 012724 123 VYVAAVDLSSSEE----FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (457)
Q Consensus 123 ~~vFvID~s~~~~----~l~~~~~~l~~~l~~l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~~ 198 (457)
-++||||+|.++. .++.+++++...++.|+++.+||||+|++.....--
T Consensus 79 dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~drv~lV~Fs~~a~~~~p--------------------------- 131 (464)
T 4fx5_A 79 VEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARVVYP--------------------------- 131 (464)
T ss_dssp EEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTCEEEEEEESSSEEEEES---------------------------
T ss_pred eEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCCEEEEEEEcCceEEEec---------------------------
Confidence 4999999999864 588899999999999999999999999987654211
Q ss_pred ccccccccc-hHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEec
Q 012724 199 MPLSQFLAP-VETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLS 277 (457)
Q Consensus 199 ~p~~~~l~~-~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~ 277 (457)
+...+.+ -...+..+.+.|+.|... .++.++.||..|..+|....+ ....|+++++
T Consensus 132 --~t~~l~~~~~~~~~~l~~~I~~L~~~------------------GgT~l~~aL~~A~~~l~~~~~---~~~~IILLTD 188 (464)
T 4fx5_A 132 --TGGQLLRADYQSRAAAKEAVGRLHAN------------------GGTAMGRWLAQAGRIFDTAPS---AIKHAILLTD 188 (464)
T ss_dssp --SSSSCEECSHHHHHHHHHHHHTCCCC------------------SCCCHHHHHHHHHHHHTTCTT---SEEEEEEEES
T ss_pred --CCcccccCCHHHHHHHHHHHHcCCCC------------------CCCcHHHHHHHHHHHHhcCCC---CCCEEEEEcC
Confidence 0000111 123556667777776532 356799999999999976432 1358999999
Q ss_pred CCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEE
Q 012724 278 GPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFL 357 (457)
Q Consensus 278 g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~ 357 (457)
|.++.+.- ... . -+.+....+|.+..|.++. ..|...|..|+..|||..++
T Consensus 189 G~~~~~~~--------------------------~~l-~-~~~~a~~~~i~i~tiGiG~-~~d~~~L~~IA~~tgG~~~~ 239 (464)
T 4fx5_A 189 GKDESETP--------------------------ADL-A-RAIQSSIGNFTADCRGIGE-DWEPKELRKIADALLGTVGI 239 (464)
T ss_dssp SCCTTSCH--------------------------HHH-H-HHHHHHTTTCEEEEEEESS-SSCHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCh--------------------------HHH-H-HHHHHhcCCCeEEEEEeCC-ccCHHHHHHHHHhCCCEEEE
Confidence 98864210 001 1 1222345788888887754 46778899999999999888
Q ss_pred eCCCCC-CcHHHHHHHHhccCcceeeEEEEEcCCCeeEeEeeec------cccCCC-----CCCceEEeeeCCCceEEEE
Q 012724 358 YSSTDD-STLPQDIYRMLSRPYAFNCIMRLRTSSEFKPGHSYGH------FFPDPQ-----YENVQHIICCDSYATYAYD 425 (457)
Q Consensus 358 ~~~~~~-~~l~~dl~~~l~~~~~~~~~lrvR~S~gl~i~~~~G~------~~~~~~-----~~~~~~~~~~~~~~s~~~~ 425 (457)
.++.+. .....++...+.....-++.+++++..|..+..+..- +..... ....+.++.+ .+..=.|.
T Consensus 240 v~d~~~L~~~f~~i~~~~~s~~~~dv~l~l~~~~g~~v~~v~~v~P~~~~l~~~~~~~~~~~~~~v~lG~l-~~e~r~~l 318 (464)
T 4fx5_A 240 IRDPATLAEDFREMTAKSMGKEVADVALRLWAPKGATIRYVKQVSPNLADLSGMRVPGDNPLTGDYPTGAW-GAESREYH 318 (464)
T ss_dssp ESSGGGHHHHHHHHHHHHHTCCEEEEEEEEECCTTCEEEEEEEEESBCEECGGGCEECSSTTEEEEEEEEE-SSEEEEEE
T ss_pred cCCHHHHHHHHHHHHHHhhchheeeeEEEEEeCCCcEEEEEEeecccccccCcccccCCCCcEEEEECCcC-CCCeEEEE
Confidence 776542 1233344444556678999999999999988766321 111110 1234566777 66666666
Q ss_pred EEEecCCCCCCceeE-EEEEEeeecCCC
Q 012724 426 FDFANAAGFARLHFN-IQLLCLLRNFQV 452 (457)
Q Consensus 426 ~~~~~~~~l~~~~~~-iQ~~~~y~~~~~ 452 (457)
+++.-+..-.+.+.- .+..+.|.+..+
T Consensus 319 v~l~v~~~~~g~~~~~~~v~~~y~~~~~ 346 (464)
T 4fx5_A 319 ICVEVEPGNIGQEKLAGRVQLVAKDAGG 346 (464)
T ss_dssp EEEECCCCCTTCEEEEEEEEEEEEETTE
T ss_pred EEEEcCCCCCCceeEEEEEEEEEcCCCc
Confidence 666544222233333 688899988663
No 10
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.4e-08 Score=93.63 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=114.9
Q ss_pred CCcEEEEEEECCCChh-------HHHHHHHHHHHHHHhCCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcccc
Q 012724 120 ARPVYVAAVDLSSSEE-------FLELTRSALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLS 192 (457)
Q Consensus 120 ~~p~~vFvID~s~~~~-------~l~~~~~~l~~~l~~l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~ 192 (457)
.+.-++|+||+|.++. .++.+++++...++.++ +.+||||+|++..+.. .
T Consensus 10 ~~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~-~~~v~lv~F~~~~~~~-------------~--------- 66 (218)
T 3ibs_A 10 KGVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELD-NDKVGMIVFAGDAFTQ-------------L--------- 66 (218)
T ss_dssp CCCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCS-SCEEEEEEESSSEEEE-------------E---------
T ss_pred CCCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCC-CCeEEEEEECCCceEe-------------C---------
Confidence 4557999999999863 68999999999999997 6799999999764321 0
Q ss_pred ccccccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEE
Q 012724 193 LELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARV 272 (457)
Q Consensus 193 ~dl~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkI 272 (457)
++ ....+.+.++|+.|.... .+ ...+.++.||..|...+..... ....|
T Consensus 67 -~~-------------~~~~~~~~~~l~~l~~~~---~~-----------~g~T~l~~al~~a~~~l~~~~~---~~~~i 115 (218)
T 3ibs_A 67 -PI-------------TSDYISAKMFLESISPSL---IS-----------KQGTAIGEAINLATRSFTPQEG---VGRAI 115 (218)
T ss_dssp -EE-------------ESCHHHHHHHHHTCCGGG---CC-----------SCSCCHHHHHHHHHTTSCSCSS---CCEEE
T ss_pred -CC-------------CCCHHHHHHHHHhcCccc---CC-----------CCCCcHHHHHHHHHHHHhhCCC---CCcEE
Confidence 01 112344566777775421 00 1457899999999999876521 13689
Q ss_pred EEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCC---------------
Q 012724 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE--------------- 337 (457)
Q Consensus 273 i~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~--------------- 337 (457)
+++++|.++.| . ..+.+..+.+.+|.|..+.++..
T Consensus 116 vllTDG~~~~~--~----------------------------~~~~~~~~~~~~i~v~~igig~~~~~~~~~~g~~~~~~ 165 (218)
T 3ibs_A 116 IVITDGENHEG--G----------------------------AVEAAKAAAEKGIQVSVLGVGMPEGAPIPVEGTNDYRR 165 (218)
T ss_dssp EEEECCTTCCS--C----------------------------HHHHHHHHHTTTEEEEEEEESCTTCEECBCTTSSCBCB
T ss_pred EEEcCCCCCCC--c----------------------------HHHHHHHHHhcCCEEEEEEecCCCCCcccccCCCceeE
Confidence 99999988754 0 13577788889999999988764
Q ss_pred ---------ccCccccccccccCccEEEEeCC
Q 012724 338 ---------YTDLASLKFLSIESGGSLFLYSS 360 (457)
Q Consensus 338 ---------~~~l~~l~~l~~~TGG~v~~~~~ 360 (457)
..+...|..+|+.|||..++..+
T Consensus 166 ~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 166 DREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp CTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred cCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 46677899999999999877764
No 11
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.77 E-value=5e-08 Score=92.55 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=103.7
Q ss_pred EEEEEEECCCCh-------hHHHHHHHHHHHHHHh---CCCCcEEEEEEecce-eEEEEccCCCcceeeeeeCCCCCccc
Q 012724 123 VYVAAVDLSSSE-------EFLELTRSALQAALEA---VPSGALFGLATFSHK-IGLYDVQGAIPVVKNVFIPSDTEDTL 191 (457)
Q Consensus 123 ~~vFvID~s~~~-------~~l~~~~~~l~~~l~~---l~~~~~vglItf~~~-V~~y~l~~~~~~~~~v~~~~~~~~~v 191 (457)
..|||||+|.++ ..+++.+.++...++. ..+..+||||+|... ..+. .
T Consensus 5 AtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~vl-------------~-------- 63 (268)
T 4b4t_W 5 ATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVL-------------S-------- 63 (268)
T ss_dssp EEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEEE-------------E--------
T ss_pred eEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCcceec-------------c--------
Confidence 479999999986 3688888888877763 456779999999642 2111 1
Q ss_pred cccccccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccE
Q 012724 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (457)
Q Consensus 192 ~~dl~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gk 271 (457)
++...+..|...|+.|+.. ..+.++.||+.|..+|+...... .--|
T Consensus 64 ---------------plT~D~~~il~aL~~l~~~------------------G~T~l~~gL~~A~~aLk~~~~k~-~~~r 109 (268)
T 4b4t_W 64 ---------------TFTAEFGKILAGLHDTQIE------------------GKLHMATALQIAQLTLKHRQNKV-QHQR 109 (268)
T ss_dssp ---------------EEESCHHHHHHHHTTCCCC------------------SCCCHHHHHHHHHHHHHTCSCTT-SEEE
T ss_pred ---------------CCcchHHHHHHHhhhcCcC------------------CCCChHHHHHHHHHHHHhcccCC-CceE
Confidence 1112345566777766532 34679999999999997543211 1248
Q ss_pred EEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccC
Q 012724 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (457)
Q Consensus 272 Ii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~T 351 (457)
||+|++|+-+. ..+-..++++++.+++|.||++.++.+..+-..|..+++..
T Consensus 110 IIlf~ds~~~~----------------------------~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~ 161 (268)
T 4b4t_W 110 IVAFVCSPISD----------------------------SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAV 161 (268)
T ss_dssp EEEEECSCCSS----------------------------CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHH
T ss_pred EEEEECCCCCC----------------------------CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHh
Confidence 99999985321 12234689999999999999999998766777788887766
Q ss_pred cc
Q 012724 352 GG 353 (457)
Q Consensus 352 GG 353 (457)
+|
T Consensus 162 Ng 163 (268)
T 4b4t_W 162 NN 163 (268)
T ss_dssp CS
T ss_pred cC
Confidence 55
No 12
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=98.73 E-value=6.4e-07 Score=81.62 Aligned_cols=164 Identities=11% Similarity=0.070 Sum_probs=107.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl 195 (457)
+.-.+|+||.|.+. ..++.+++.++..++.++ ++.|||+|+|++..+.. . ++
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~-------------~----------~l 69 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAY-------------I----------GL 69 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEE-------------E----------CT
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEE-------------E----------ec
Confidence 44689999999985 467889999999999886 57899999999875431 0 11
Q ss_pred cccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHH-hhccccCCCccccEEEE
Q 012724 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN-YLGSEYGNTFALARVFA 274 (457)
Q Consensus 196 ~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~-lL~~~~~~~~~~gkIi~ 274 (457)
. .+ ..++.+.+.++.|+... ...+.+|.||..|.. ++.. +......-.|++
T Consensus 70 ~------~~-----~~~~~~~~~i~~l~~~g----------------g~~T~~~~aL~~a~~~~~~~-~~r~~~~~~iil 121 (202)
T 1ijb_A 70 K------DR-----KRPSELRRIASQVKYAG----------------SQVASTSEVLKYTLFQIFSK-IDRPEASRIALL 121 (202)
T ss_dssp T------CC-----CCHHHHHHHHHTCCCCC----------------BSCCCHHHHHHHHHHHTSSS-CSCTTSEEEEEE
T ss_pred C------CC-----CCHHHHHHHHHhCcCCC----------------CCcCcHHHHHHHHHHHHhcc-CCCCCCCeEEEE
Confidence 1 11 12345666777775421 013689999999974 4442 111111236888
Q ss_pred EecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCcccccccccc-Ccc
Q 012724 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIE-SGG 353 (457)
Q Consensus 275 f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~-TGG 353 (457)
+++|.++.|.. .-..+.++.+.+.||.|-.+.++. ..|..+|..++.. +||
T Consensus 122 lTDG~~~~~~~---------------------------~~~~~~a~~l~~~gi~i~~igvG~-~~~~~~L~~iA~~~~~~ 173 (202)
T 1ijb_A 122 LMASQEPQRMS---------------------------RNFVRYVQGLKKKKVIVIPVGIGP-HANLKQIRLIEKQAPEN 173 (202)
T ss_dssp EECCCCCGGGC---------------------------TTHHHHHHHHHHTTEEEEEEEEST-TSCHHHHHHHHHHCTTC
T ss_pred EccCCCCccch---------------------------HHHHHHHHHHHHCCCEEEEEecCC-cCCHHHHHHHhCCCCcc
Confidence 89987753200 011346677778888776666643 4678889999984 688
Q ss_pred EEEEeCCCCC
Q 012724 354 SLFLYSSTDD 363 (457)
Q Consensus 354 ~v~~~~~~~~ 363 (457)
++|..++++.
T Consensus 174 ~~~~~~~~~~ 183 (202)
T 1ijb_A 174 KAFVLSSVDE 183 (202)
T ss_dssp CCEEESSGGG
T ss_pred cEEEeCCHHH
Confidence 9888887753
No 13
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=98.64 E-value=1.3e-06 Score=79.24 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=111.9
Q ss_pred CcEEEEEEECCCChhHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
+.-.+|+||+|.+.+.++.+++.+...++.+. ++.|||||+|++..+.. . ++.+
T Consensus 6 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~-------------~----------~l~~ 62 (200)
T 1v7p_C 6 LIDVVVVCDESNSIYPWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVV-------------F----------NLNT 62 (200)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEE-------------E----------CTTT
T ss_pred cccEEEEEECCCCcccHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEE-------------E----------eCCC
Confidence 44689999999987668889999999999885 68899999999875431 0 1110
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHh-hccccCC-CccccEEEEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSEYGN-TFALARVFAF 275 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-L~~~~~~-~~~~gkIi~f 275 (457)
+ ..+..+.+.|+.++... ...+.+|.||..|.+. +....+. ......|+++
T Consensus 63 ------~-----~~~~~~~~~i~~l~~~~----------------G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivll 115 (200)
T 1v7p_C 63 ------Y-----KTKEEMIVATSQTSQYG----------------GDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVV 115 (200)
T ss_dssp ------C-----SSHHHHHHHHHHCCCCC----------------CSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEE
T ss_pred ------c-----CCHHHHHHHHHhhhccC----------------CCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEE
Confidence 0 12344555666665321 0146799999999985 5432211 1112458889
Q ss_pred ecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecC----CccC----ccccccc
Q 012724 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN----EYTD----LASLKFL 347 (457)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~----~~~~----l~~l~~l 347 (457)
++|.++.+. -..+.++.+.+.||.|..+.++. ..++ ..+|..+
T Consensus 116 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~i~~igvg~~~~~~~~~~~~~~~~L~~i 166 (200)
T 1v7p_C 116 TDGESHDGS-----------------------------MLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAI 166 (200)
T ss_dssp ESSCCSCGG-----------------------------GHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHH
T ss_pred ccCCCCCcc-----------------------------cHHHHHHHHHHCCCEEEEEEecccccccccchhhHHHHHHHH
Confidence 999876221 02356778888998887776631 2344 4679999
Q ss_pred cccCccE-EEEeCCCCC-CcHHHHHHHH
Q 012724 348 SIESGGS-LFLYSSTDD-STLPQDIYRM 373 (457)
Q Consensus 348 ~~~TGG~-v~~~~~~~~-~~l~~dl~~~ 373 (457)
+..|||. +|..++++. ..+...|.+.
T Consensus 167 A~~~~g~~~~~~~~~~~l~~i~~~i~~~ 194 (200)
T 1v7p_C 167 ASIPTERYFFNVSDEAALLEKAGTLGEQ 194 (200)
T ss_dssp SCSSHHHHEEEESSSGGGHHHHHHHHHH
T ss_pred hCCccHhcEEEcCCHHHHHHHHHHHHhh
Confidence 9999986 455566643 2233444433
No 14
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=98.64 E-value=9.3e-07 Score=81.78 Aligned_cols=175 Identities=13% Similarity=0.101 Sum_probs=112.8
Q ss_pred CcEEEEEEECCCChhHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
+.-++|+||.|.+...++.+++.+...++.+. ++.+||||+|++.++.. . ++.+
T Consensus 22 ~~div~vlD~SgSM~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~-------------~----------~l~~ 78 (223)
T 2b2x_A 22 QLDIVIVLDGSNSIYPWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE-------------F----------NLNK 78 (223)
T ss_dssp CEEEEEEEECSTTCCCHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEE-------------E----------CTTT
T ss_pred cceEEEEEECCCChhhHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEE-------------E----------ecCC
Confidence 45689999999998778889999999998874 68899999999875431 0 1111
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHh-hccccCC-CccccEEEEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSEYGN-TFALARVFAF 275 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-L~~~~~~-~~~~gkIi~f 275 (457)
+ ..+..+.+.|+.+.... ...+.+|.||..|.+. +....+. ......|+++
T Consensus 79 ------~-----~~~~~~~~~i~~l~~~g----------------G~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iill 131 (223)
T 2b2x_A 79 ------Y-----SSTEEVLVAANKIVQRG----------------GRQTMTALGIDTARKEAFTEARGARRGVKKVMVIV 131 (223)
T ss_dssp ------C-----CSHHHHHHHHTTCCCCC----------------CSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEE
T ss_pred ------C-----CCHHHHHHHHHhhhccC----------------CCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 0 01223344455443210 0136799999999986 4422111 1112468889
Q ss_pred ecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCcc----C----ccccccc
Q 012724 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYT----D----LASLKFL 347 (457)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~----~----l~~l~~l 347 (457)
++|.++.|. -..+.++.+.+.||.|..+.++.+.- + ...|..+
T Consensus 132 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~~~~~~L~~i 182 (223)
T 2b2x_A 132 TDGESHDNY-----------------------------RLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSI 182 (223)
T ss_dssp ESSCCTTGG-----------------------------GHHHHHHHHHTTTEEEEEEEECGGGC---CCCHHHHHHHHTT
T ss_pred cCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEecCccccccccchhHHHHHHHH
Confidence 999876432 02356777888898887777654321 0 3678999
Q ss_pred ccc-CccEEEEeCCCCC-CcHHHHHHHHh
Q 012724 348 SIE-SGGSLFLYSSTDD-STLPQDIYRML 374 (457)
Q Consensus 348 ~~~-TGG~v~~~~~~~~-~~l~~dl~~~l 374 (457)
+.. |||.+|..++++. ..+.+.|.+.+
T Consensus 183 A~~p~~g~~~~~~~~~~L~~i~~~i~~~i 211 (223)
T 2b2x_A 183 ASEPTEKHFFNVSDELALVTIVKALGERI 211 (223)
T ss_dssp SCSSGGGTEEEESSTTGGGGGHHHHHTTT
T ss_pred hCCCchhcEEEeCCHHHHHHHHHHHHHhh
Confidence 998 9999988887653 23445554444
No 15
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=98.57 E-value=8.5e-07 Score=80.13 Aligned_cols=175 Identities=17% Similarity=0.188 Sum_probs=111.3
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
+.-++|+||.|.+. ..++.++++++..++.+ +++.+||||+|++.++..- ++.+
T Consensus 9 ~~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~~-----------------------~~~~ 65 (198)
T 1n3y_A 9 EQDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-----------------------TFEE 65 (198)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEEE-----------------------CHHH
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEEE-----------------------ecCc
Confidence 45689999999986 35677888899999988 7899999999998754310 0000
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHH-HhhccccCC-CccccEEEEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF-NYLGSEYGN-TFALARVFAF 275 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~-~lL~~~~~~-~~~~gkIi~f 275 (457)
. . .+..+.+.++.+... ...+.++.||..|. .++....+. ......|+++
T Consensus 66 ~----------~-~~~~~~~~i~~l~~~-----------------~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iill 117 (198)
T 1n3y_A 66 F----------R-RSSNPLSLLASVHQL-----------------QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVI 117 (198)
T ss_dssp H----------H-HCSSGGGGGTTCCCC-----------------CSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEE
T ss_pred c----------C-CHHHHHHHHhcCcCC-----------------CCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEE
Confidence 0 0 001111223333211 13578999999999 555542111 1113578999
Q ss_pred ecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCc---cCccccccccccCc
Q 012724 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIESG 352 (457)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~---~~l~~l~~l~~~TG 352 (457)
++|.++.++-. +.+.+..+.+.||.|..+.++.+. .+...|..++..||
T Consensus 118 TDG~~~~~~~~----------------------------~~~~~~~~~~~gi~i~~igvG~~~~~~~~~~~L~~iA~~~~ 169 (198)
T 1n3y_A 118 TDGKKEGDSLD----------------------------YKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPS 169 (198)
T ss_dssp ESSCCBSCSSC----------------------------HHHHHHHHHHTTCEEEEEEESGGGGSSTTHHHHHHHSCSSS
T ss_pred CCCCCCCCccc----------------------------HHHHHHHHHHCCCEEEEEEccccccccccHHHHHHHHcCCC
Confidence 99988733210 135677788899988888776553 36788999999999
Q ss_pred cEE-EEeCCCCC-CcHHHHHHHHh
Q 012724 353 GSL-FLYSSTDD-STLPQDIYRML 374 (457)
Q Consensus 353 G~v-~~~~~~~~-~~l~~dl~~~l 374 (457)
|.. +..++++. ..+.++|.+.+
T Consensus 170 g~~~~~~~~~~~l~~~~~~i~~~i 193 (198)
T 1n3y_A 170 QEHIFKVEDFDALKDIQNQLKEKI 193 (198)
T ss_dssp GGGEEEESSGGGGGGGHHHHHHHH
T ss_pred cccEEEeCCHHHHHHHHHHHHhhe
Confidence 974 55566542 23455665544
No 16
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=98.55 E-value=4.5e-06 Score=74.90 Aligned_cols=159 Identities=17% Similarity=0.157 Sum_probs=106.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl 195 (457)
+.-.+|+||.|.+. ..++.+++.+...++.++ ++.|||+|+|++.++.. . ++
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~-------------~----------~l 61 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTID-------------V----------PW 61 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE-------------E----------CT
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEE-------------E----------ec
Confidence 45689999999985 568889999999999885 35899999999865431 0 01
Q ss_pred cccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccc-cCCCccccE-EE
Q 012724 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE-YGNTFALAR-VF 273 (457)
Q Consensus 196 ~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~-~~~~~~~gk-Ii 273 (457)
. .. ..++.+.+.++.++.. ..++.+|.||..|.+.+... .|.+....+ ++
T Consensus 62 ~------~~-----~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vi 113 (189)
T 1atz_A 62 N------VV-----PEKAHLLSLVDVMQRE-----------------GGPSQIGDALGFAVRYLTSEMHGARPGASKAVV 113 (189)
T ss_dssp T------CC-----CCHHHHHHHHHTCCCC-----------------CCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEE
T ss_pred C------CC-----CCHHHHHHHHHhCcCC-----------------CCcchHHHHHHHHHHHHhccccCCCCCCCcEEE
Confidence 0 00 1244556677766532 13578999999999887542 111111135 67
Q ss_pred EEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCcc
Q 012724 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGG 353 (457)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG 353 (457)
++++|.++-. ..+.++.+.+.||.|..+.++. ..+...|..++..++|
T Consensus 114 vltdg~~~~~-------------------------------~~~~~~~~~~~gi~v~~igvG~-~~~~~~L~~iA~~~~~ 161 (189)
T 1atz_A 114 ILVTDVSVDS-------------------------------VDAAADAARSNRVTVFPIGIGD-RYDAAQLRILAGPAGD 161 (189)
T ss_dssp EEECSCCSSC-------------------------------CHHHHHHHHHTTEEEEEEEESS-SSCHHHHHHHTGGGGG
T ss_pred EEeCCCCCch-------------------------------HHHHHHHHHHCCCEEEEEEcCC-cCCHHHHHHHHCCCcc
Confidence 7888854311 0356777888998887777654 3677889999999876
Q ss_pred -EEEEeCCCC
Q 012724 354 -SLFLYSSTD 362 (457)
Q Consensus 354 -~v~~~~~~~ 362 (457)
.++...+++
T Consensus 162 ~~~~~~~~~~ 171 (189)
T 1atz_A 162 SNVVKLQRIE 171 (189)
T ss_dssp GGCEEESSTT
T ss_pred cCEEEecChh
Confidence 566666664
No 17
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=98.55 E-value=2.1e-06 Score=78.71 Aligned_cols=177 Identities=12% Similarity=0.090 Sum_probs=115.0
Q ss_pred CcEEEEEEECCCChhHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 121 RPVYVAAVDLSSSEEFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 121 ~p~~vFvID~s~~~~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
+.-.+|+||.|.+.+.++.+++.+...++.+. ++.+||||+|++.++.. . ++.+
T Consensus 7 ~~div~vlD~SgSm~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~-------------~----------~l~~ 63 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIYPWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE-------------F----------NLNK 63 (213)
T ss_dssp CEEEEEEEECCTTCCCHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEE-------------E----------CTTT
T ss_pred CccEEEEEECCCChhhHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEE-------------E----------eccc
Confidence 45689999999998778889999999888774 68999999999875431 0 1111
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHh-hccccCC-CccccEEEEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSEYGN-TFALARVFAF 275 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-L~~~~~~-~~~~gkIi~f 275 (457)
+ ..+..+.+.++.++... ...+.+|.||..|.+. +....+. ......|+++
T Consensus 64 ------~-----~~~~~~~~~i~~l~~~~----------------G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iill 116 (213)
T 1pt6_A 64 ------Y-----SSTEEVLVAAKKIVQRG----------------GRQTMTALGTDTARKEAFTEARGARRGVKKVMVIV 116 (213)
T ss_dssp ------C-----SSHHHHHHHHHTCCCCC----------------CSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEE
T ss_pred ------c-----CCHHHHHHHHHhccCCC----------------CCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 0 02233445566554321 0136799999999986 4422111 1112468889
Q ss_pred ecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCc----cC----ccccccc
Q 012724 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY----TD----LASLKFL 347 (457)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~----~~----l~~l~~l 347 (457)
++|.++.|. -..+.++.+.+.||.+..+.++.+. .+ ...|..+
T Consensus 117 TDG~~~~~~-----------------------------~~~~~~~~~~~~gi~i~~igig~~~~~~~~~~~~~~~~L~~i 167 (213)
T 1pt6_A 117 TDGESHDNH-----------------------------RLKKVIQDCEDENIQRFSIAILGSYNRGNLSTEKFVEEIKSI 167 (213)
T ss_dssp ESSCCSCSH-----------------------------HHHHHHHHHHHTTEEEEEEEECHHHHHTTCCCHHHHHHHHHH
T ss_pred cCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEeccccccccccchhhHHHHHHH
Confidence 999876431 1245677888889887777665321 11 3678999
Q ss_pred ccc-CccEEEEeCCCCC-CcHHHHHHHHhcc
Q 012724 348 SIE-SGGSLFLYSSTDD-STLPQDIYRMLSR 376 (457)
Q Consensus 348 ~~~-TGG~v~~~~~~~~-~~l~~dl~~~l~~ 376 (457)
+.. |||.+|..++++. ..+...|.+.+.+
T Consensus 168 A~~~~~g~~~~~~~~~~l~~i~~~l~~~i~~ 198 (213)
T 1pt6_A 168 ASEPTEKHFFNVSDELALVTIVKTLGERIFA 198 (213)
T ss_dssp SCSSHHHHEEEESSGGGGGGGHHHHHHHHTC
T ss_pred hCCCchhcEEEeCCHHHHHHHHHHHHHhhee
Confidence 998 7899988887653 3455666665544
No 18
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.54 E-value=1.3e-06 Score=78.85 Aligned_cols=176 Identities=14% Similarity=0.196 Sum_probs=110.3
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC-CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP-SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~-~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
+.-++|+||.|.+. ..++.++++++..++.+. ++.+||||+|++.++.. . ++.+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~-------------~----------~l~~ 61 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH-------------F----------TFKE 61 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE-------------E----------CHHH
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEE-------------E----------ecCC
Confidence 45689999999985 357788999988888874 67899999999875421 0 1110
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhh-ccccCCC-ccccEEEEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYGNT-FALARVFAF 275 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL-~~~~~~~-~~~gkIi~f 275 (457)
.. .+..+.+.++.|+.. ...+.+|.||..|.+.+ ....+.+ .....|+++
T Consensus 62 ----------~~-~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iill 113 (194)
T 1mf7_A 62 ----------FQ-NNPNPRSLVKPITQL-----------------LGRTHTATGIRKVVRELFNITNGARKNAFKILVVI 113 (194)
T ss_dssp ----------HH-HSCCHHHHHTTCCCC-----------------CSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEE
T ss_pred ----------cC-CHHHHHHHHHhCcCC-----------------CCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEE
Confidence 00 112234455555421 13578999999999644 3321111 012358889
Q ss_pred ecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCc---cCccccccccccC-
Q 012724 276 LSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIES- 351 (457)
Q Consensus 276 ~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~---~~l~~l~~l~~~T- 351 (457)
++|.++..+-. +.+.++.+.+.||.|..+.++.+. .+..+|..++..+
T Consensus 114 TDG~~~~d~~~----------------------------~~~~~~~~~~~gi~v~~igvG~~~~~~~~~~~L~~iA~~~~ 165 (194)
T 1mf7_A 114 TDGEKFGDPLG----------------------------YEDVIPEADREGVIRYVIGVGDAFRSEKSRQELNTIASKPP 165 (194)
T ss_dssp ESSCCBSCSSC----------------------------GGGTHHHHHHTTEEEEEEEESGGGCSHHHHHHHHHHSCSSH
T ss_pred cCCCCCCCchh----------------------------hHHHHHHHHHCCCEEEEEEecccccccccHHHHHHHhCCCC
Confidence 99988711100 013456677889888777765442 1367899999986
Q ss_pred ccEEEEeCCCCC-CcHHHHHHHHhc
Q 012724 352 GGSLFLYSSTDD-STLPQDIYRMLS 375 (457)
Q Consensus 352 GG~v~~~~~~~~-~~l~~dl~~~l~ 375 (457)
+|.+|..++++. ..+...|.+-+.
T Consensus 166 ~~~~~~~~~~~~l~~~~~~i~~~ic 190 (194)
T 1mf7_A 166 RDHVFQVNNFEALKTIQNQLREKIF 190 (194)
T ss_dssp HHHEEEESSGGGGGGGHHHHHHHHH
T ss_pred cccEEEeCCHHHHHHHHHHHHHHHh
Confidence 588888887753 335556655443
No 19
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.54 E-value=4.4e-06 Score=76.70 Aligned_cols=170 Identities=11% Similarity=0.142 Sum_probs=106.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l---~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl 195 (457)
+.-++||||.|.+. ..++.+++++...++.+ +++.+||||+|++.++..- ++
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~-----------------------~~ 71 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------KV 71 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE-----------------------CT
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee-----------------------cc
Confidence 45699999999985 45788888888877654 5578999999998764310 11
Q ss_pred cccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCC-----cccc
Q 012724 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNT-----FALA 270 (457)
Q Consensus 196 ~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~-----~~~g 270 (457)
.+ +....++.+.+.|+.|+..... . ...+.++.||..|...|....+.. ...-
T Consensus 72 ~~---------~~~~~~~~~~~~i~~l~~~~~~--~-----------~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~ 129 (223)
T 1q0p_A 72 SE---------ADSSNADWVTKQLNEINYEDHK--L-----------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRH 129 (223)
T ss_dssp TS---------GGGGCHHHHHHHHHTCCTTSCS--C-----------TTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEE
T ss_pred cc---------CCCCCHHHHHHHHHhccccccc--C-----------CCCccHHHHHHHHHHHhhccccccccccccCCe
Confidence 10 1122345567778877643100 0 146789999999999987532110 1124
Q ss_pred EEEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHH---------HHHHHcceEEEEeeecCCccCc
Q 012724 271 RVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLA---------AVAVQAGVCVDIFAITNEYTDL 341 (457)
Q Consensus 271 kIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la---------~~~~~~~isvdlf~~~~~~~~l 341 (457)
.|+++++|.++.|.... ..-+.+. +.+.+.+|.|..+.++. .++.
T Consensus 130 ~iillTDG~~~~g~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~i~i~~igvG~-~~~~ 183 (223)
T 1q0p_A 130 VIILMTDGLHNMGGDPI-------------------------TVIDEIRDLLYIGKDRKNPREDYLDVYVFGVGP-LVNQ 183 (223)
T ss_dssp EEEEEECSCCCSSSCTH-------------------------HHHHHHHHHTTCSCBTTBCCGGGEEEEEEECSS-CCCH
T ss_pred EEEEECCCCCCCCCChH-------------------------HHHHHHHHHHhhhhhhhhcccCCcEEEEEEecC-cCCH
Confidence 58899999998763100 0001111 22234566666665543 4678
Q ss_pred cccccccccCcc--EEEEeCCC
Q 012724 342 ASLKFLSIESGG--SLFLYSST 361 (457)
Q Consensus 342 ~~l~~l~~~TGG--~v~~~~~~ 361 (457)
..|..++..+|| .++..+++
T Consensus 184 ~~L~~iA~~~~G~~~~~~~~~~ 205 (223)
T 1q0p_A 184 VNINALASKKDNEQHVFKVKDM 205 (223)
T ss_dssp HHHHHHSCCCTTCCCEEETTC-
T ss_pred HHHHHHhcCCCCCceEEEcCCH
Confidence 889999999999 66666654
No 20
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.53 E-value=6.8e-09 Score=93.56 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=98.6
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC-CCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV-PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l-~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
+..++|+||+|.+. ..++.+++++...++.+ +++.+||||+|++... .+.
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~------------~~~--------------- 57 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAA------------QVL--------------- 57 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCC------------CBC---------------
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCc------------eEe---------------
Confidence 45689999999986 46778899999998877 8889999999986210 011
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEec
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLS 277 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~ 277 (457)
+|+. ..+..+.+.|+.+... ..+.++.||..|..++...... .....|+++++
T Consensus 58 -~~~~-------~~~~~~~~~i~~l~~~------------------g~T~~~~al~~a~~~l~~~~~~-~~~~~ivliTD 110 (189)
T 2x31_A 58 -LQPS-------RSLTQTKRQLQGLPGG------------------GGTPLASGMEMAMVTAKQARSR-GMTPTIALLTD 110 (189)
T ss_dssp -TTTC-------SCHHHHHHHHHHCCCC------------------BCCCCHHHHHHHHHHHHTCTTT-CSSEEEEECCB
T ss_pred -cCCC-------CCHHHHHHHHhcCCCC------------------CCCCHHHHHHHHHHHHHhccCC-CCceEEEEECC
Confidence 1111 1234455666666532 2467999999999998753211 01258999999
Q ss_pred CCCCCCCCccccccc-cCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEE
Q 012724 278 GPPDHGAGQLDTRRY-GEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLF 356 (457)
Q Consensus 278 g~pt~GpG~l~~~~~-~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~ 356 (457)
|.++.|+..-+..+. .... .+++..+.+.||.+..+.++.. +...|..|+..|||..+
T Consensus 111 G~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~gi~v~~ig~g~~--~~~~L~~iA~~~~G~~~ 169 (189)
T 2x31_A 111 GRGNIALDGTANRELAGEQA-------------------TKVARAIRASGMPAVIIDTAMR--PNPALVDLARTMDAHYI 169 (189)
T ss_dssp SCCSSCCTHHHHHGGGTCCC-------------------EEEEECTGGGGSCCTHHHHHHS--SCSSSCSTTTEEEESST
T ss_pred CCCCCCCCccccccchhHHH-------------------HHHHHHHHHcCCeEEEEecCCC--CHHHHHHHHHhcCCeEE
Confidence 999987531100000 0000 0011122334443333333322 66789999999999865
Q ss_pred EeC
Q 012724 357 LYS 359 (457)
Q Consensus 357 ~~~ 359 (457)
+.+
T Consensus 170 ~~~ 172 (189)
T 2x31_A 170 ALP 172 (189)
T ss_dssp TTH
T ss_pred ECC
Confidence 443
No 21
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=98.51 E-value=8.2e-07 Score=80.42 Aligned_cols=163 Identities=18% Similarity=0.175 Sum_probs=101.3
Q ss_pred EEEEEEECCCCh-------hHHHHHHHHHHHHHHh---CCCCcEEEEEEecce-eEEEEccCCCcceeeeeeCCCCCccc
Q 012724 123 VYVAAVDLSSSE-------EFLELTRSALQAALEA---VPSGALFGLATFSHK-IGLYDVQGAIPVVKNVFIPSDTEDTL 191 (457)
Q Consensus 123 ~~vFvID~s~~~-------~~l~~~~~~l~~~l~~---l~~~~~vglItf~~~-V~~y~l~~~~~~~~~v~~~~~~~~~v 191 (457)
..+|+||+|.++ ..++..+.++...+.. ..+..+||||+|... -++ ..
T Consensus 4 ~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~-------------~~-------- 62 (192)
T 2x5n_A 4 ATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQV-------------LS-------- 62 (192)
T ss_dssp EEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCE-------------EE--------
T ss_pred EEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEE-------------ec--------
Confidence 579999999975 3677777777665432 234579999999763 211 11
Q ss_pred cccccccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccE
Q 012724 192 SLELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALAR 271 (457)
Q Consensus 192 ~~dl~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gk 271 (457)
| +......+..+|+.+... .++.+|.||..|..+|+..... ....|
T Consensus 63 --------p-------lT~d~~~i~~~L~~l~~~------------------g~t~l~~aL~~A~~~l~~~~~~-~~~~r 108 (192)
T 2x5n_A 63 --------T-------LTRDYGKFLSAMHDLPVR------------------GNAKFGDGIQIAQLALKHRENK-IQRQR 108 (192)
T ss_dssp --------E-------EESCHHHHHHHHTTCCCC------------------SCCCHHHHHHHHHHHHHTCSCT-TSEEE
T ss_pred --------C-------CCCCHHHHHHHHHcCCCC------------------CCchHHHHHHHHHHHHHhcccc-CCCce
Confidence 1 112345566667665431 3468999999999999764311 11358
Q ss_pred EEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccC
Q 012724 272 VFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES 351 (457)
Q Consensus 272 Ii~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~T 351 (457)
|++|+++.-+.. ..-..++++.+.+.||.|+++.++.+.-+-. |..+++.+
T Consensus 109 iiil~~~~~~~~----------------------------~~~~~~~a~~lk~~gi~v~~Ig~G~~~~~~~-l~~la~~~ 159 (192)
T 2x5n_A 109 IVAFVGSPIVED----------------------------EKNLIRLAKRMKKNNVAIDIIHIGELQNESA-LQHFIDAA 159 (192)
T ss_dssp EEEEECSCCSSC----------------------------HHHHHHHHHHHHHTTEEEEEEEESCC---CH-HHHHHHHH
T ss_pred EEEEEECCCCCC----------------------------chhHHHHHHHHHHCCCEEEEEEeCCCCccHH-HHHHHHhc
Confidence 888887632110 1123578999999999999999987765656 88888874
Q ss_pred c--cEEEEeCCCCCCcHHHH
Q 012724 352 G--GSLFLYSSTDDSTLPQD 369 (457)
Q Consensus 352 G--G~v~~~~~~~~~~l~~d 369 (457)
+ |.-+|..--...++..|
T Consensus 160 n~~~~s~~~~~~~~~~~l~d 179 (192)
T 2x5n_A 160 NSSDSCHLVSIPPSPQLLSD 179 (192)
T ss_dssp CSTTCCEEEEECCCSSCHHH
T ss_pred cCCCceEEEEecCcchhHHH
Confidence 3 44333332233444444
No 22
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.51 E-value=2.6e-06 Score=81.76 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=108.6
Q ss_pred CcEEEEEEECCCCh---hHHHHHHHHHHHHHHhCCC---CcEEEEEEecceeEEE-EccCCCcceeeeeeCCCCCccccc
Q 012724 121 RPVYVAAVDLSSSE---EFLELTRSALQAALEAVPS---GALFGLATFSHKIGLY-DVQGAIPVVKNVFIPSDTEDTLSL 193 (457)
Q Consensus 121 ~p~~vFvID~s~~~---~~l~~~~~~l~~~l~~l~~---~~~vglItf~~~V~~y-~l~~~~~~~~~v~~~~~~~~~v~~ 193 (457)
+.-++||||.|.+. ..++.++++++..++.++. +.+||||+|++.++.. .+...
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~~~l~~~------------------- 81 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREIIRLHSD------------------- 81 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEEEEECSS-------------------
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEEEEcccc-------------------
Confidence 44599999999985 3347889999999998875 7899999999876432 11110
Q ss_pred cccccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEE
Q 012724 194 ELEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVF 273 (457)
Q Consensus 194 dl~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi 273 (457)
. ...+..+.+.|+.|+.... . ...+.+|.||..|...|...++.......||
T Consensus 82 --------~------~~~~~~l~~~i~~l~~~~~---~-----------~G~T~~~~aL~~a~~~l~~~~~r~~~~~~ii 133 (281)
T 4hqf_A 82 --------A------SKNKEKALIIIKSLLSTNL---P-----------YGKTSLTDALLQVRKHLNDRINRENANQLVV 133 (281)
T ss_dssp --------C------SSCHHHHHHHHHHHHHTTG---G-----------GCSCCHHHHHHHHHHHHHTSCCCTTCEEEEE
T ss_pred --------C------ccCHHHHHHHHHHHhhccC---C-----------CCCccHHHHHHHHHHHHHhccCCCCCCEEEE
Confidence 0 0023345555666643110 0 1457899999999888765432111124688
Q ss_pred EEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCcccccccccc--C
Q 012724 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIE--S 351 (457)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~--T 351 (457)
++++|.++-+ .-..+.++.+.+.||.|-.+.++.+ .+-..|..++.. +
T Consensus 134 llTDG~~~d~-----------------------------~~~~~~~~~l~~~gv~i~~igiG~~-~~~~~L~~iA~~~~~ 183 (281)
T 4hqf_A 134 ILTDGIPDSI-----------------------------QDSLKESRKLSDRGVKIAVFGIGQG-INVAFNRFLVGCHPS 183 (281)
T ss_dssp EEESSCCSCH-----------------------------HHHHHHHHHHHHTTCEEEEEEESSS-CCHHHHHHHTTSCSS
T ss_pred EEecCCCCCc-----------------------------HHHHHHHHHHHHCCCEEEEEeCCCc-cCHHHHHhhhCCCCC
Confidence 8888877511 1123567778888987777766543 677778888876 6
Q ss_pred cc--EEEEeCCCCC
Q 012724 352 GG--SLFLYSSTDD 363 (457)
Q Consensus 352 GG--~v~~~~~~~~ 363 (457)
|| .++...+|+.
T Consensus 184 ~g~~~~~~~~~~~~ 197 (281)
T 4hqf_A 184 DGKCNLYADSAWEN 197 (281)
T ss_dssp SSCCTTEEEECGGG
T ss_pred CCCCceEEecchhh
Confidence 76 7777777753
No 23
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.51 E-value=1.8e-06 Score=89.86 Aligned_cols=177 Identities=13% Similarity=0.117 Sum_probs=112.8
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l---~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl 195 (457)
+.-++|+||.|.+. ..++.++++++..++.| +++.+||||+|++..+.. + ++
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~-------------~----------~l 65 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVL-------------M----------SV 65 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEE-------------E----------CT
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCcee-------------E----------ec
Confidence 44689999999985 45788899999988877 788999999999865431 0 01
Q ss_pred cccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCC--------c
Q 012724 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNT--------F 267 (457)
Q Consensus 196 ~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~--------~ 267 (457)
.. +....++.+.+.|+.|+... ..+ ..++.++.||+.|.++|...+... .
T Consensus 66 ~~---------~~~~~~~~~~~~l~~l~~~~---~~~----------~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~ 123 (509)
T 2odp_A 66 LN---------DNSRDMTEVISSLENANYKD---HEN----------GTGTNTYAALNSVYLMMNNQMRLLGMETMAWQE 123 (509)
T ss_dssp TS---------GGGGCHHHHHHHHHTCCGGG---GTT----------CCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHT
T ss_pred cC---------CCCCCHHHHHHHHHhccccc---CCC----------CCCccHHHHHHHHHHHHhhcccccccccccccc
Confidence 00 01123455667777775431 000 145789999999999985422100 0
Q ss_pred cccEEEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHH---------HcceEEEEeeecCCc
Q 012724 268 ALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAV---------QAGVCVDIFAITNEY 338 (457)
Q Consensus 268 ~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~---------~~~isvdlf~~~~~~ 338 (457)
....|+++++|.++.|.. . .++++.+. +.+|.|..+.++.+.
T Consensus 124 ~~~~iillTDG~~~~~~~---~--------------------------~~~~~~~~~~~~~~~~~~~~i~i~~iGvG~~~ 174 (509)
T 2odp_A 124 IRHAIILLTDGKSNMGGS---P--------------------------KTAVDHIREILNINQKRNDYLDIYAIGVGKLD 174 (509)
T ss_dssp EEEEEEEESCSCCCSSSC---T--------------------------HHHHHHHHHHTTCCSTTGGGEEEEEEEESSSC
T ss_pred cceEEEEECCCCccCCCC---h--------------------------hHHHHHHHHHhhccccccCceEEEEEEcCCCc
Confidence 013589999999887621 0 11222222 567777777665554
Q ss_pred cCccccccccccCccE--EEEeCCCCCCcHHHHHHHH
Q 012724 339 TDLASLKFLSIESGGS--LFLYSSTDDSTLPQDIYRM 373 (457)
Q Consensus 339 ~~l~~l~~l~~~TGG~--v~~~~~~~~~~l~~dl~~~ 373 (457)
.+..+|..++..+||. +++.+++ ..+.+-+.++
T Consensus 175 ~~~~~L~~iA~~~~G~~~~~~~~~~--~~l~~~~~~i 209 (509)
T 2odp_A 175 VDWRELNELGSKKDGERHAFILQDT--KALHQVFEHM 209 (509)
T ss_dssp CCHHHHHHHSCCCTTCCCEEEESSH--HHHHHHHHHH
T ss_pred ccHHHHHhhccCCCCceeeEEecCH--HHHHHHHHhh
Confidence 8899999999999998 5555544 3344333333
No 24
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.43 E-value=4.4e-06 Score=86.59 Aligned_cols=177 Identities=10% Similarity=0.104 Sum_probs=105.1
Q ss_pred EEEEEEECCCCh--hHHHHHHHHHHHHHHh---CCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 123 VYVAAVDLSSSE--EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 123 ~~vFvID~s~~~--~~l~~~~~~l~~~l~~---l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
-++||||.|.+. ..++.++++++..++. .+++.+||||+|++..+..- ++.+
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~-----------------------~~~~ 59 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV-----------------------KVSE 59 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE-----------------------CTTS
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee-----------------------cccc
Confidence 479999999986 4688888888888775 45678999999998654311 1111
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccC--C---CccccEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYG--N---TFALARV 272 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~--~---~~~~gkI 272 (457)
+....++.+.+.|+.|...... . ...+.+|.||..|.++|..... . ......|
T Consensus 60 ---------~~~~~~~~~~~~l~~l~~~~~~--~-----------~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~i 117 (497)
T 1rrk_A 60 ---------ADSSNADWVTKQLNEINYEDHK--L-----------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVI 117 (497)
T ss_dssp ---------GGGGCHHHHHHHHHHCCGGGSC--C-----------TTCCCHHHHHHHHHHHHCCC------CGGGCEEEE
T ss_pred ---------ccccCHHHHHHHHHhCcCcccc--c-----------cCccCHHHHHHHHHHHhhhhhccccccccccceEE
Confidence 1122356667778877642100 0 1457899999999999842210 0 0012478
Q ss_pred EEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCc
Q 012724 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESG 352 (457)
Q Consensus 273 i~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TG 352 (457)
+++++|.++.|.......+ .. ++...+ ...+..+.+.+|.|..+.++. .++...|..|+..+|
T Consensus 118 illTDG~~~~g~~~~~~~~---~~------~~~~~~-------~~~~~~~~~~~i~v~~igvG~-~~~~~~L~~iA~~~~ 180 (497)
T 1rrk_A 118 ILMTDGLHNMGGDPITVID---EI------RDLLYI-------GKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKD 180 (497)
T ss_dssp EEEECSCCCSSSCTHHHHH---HH------HHHTTC-------SSCC-CCCGGGEEEEEEECSS-SCCHHHHHHHSCCCT
T ss_pred EEEeCCCcccCCChhHHHH---HH------HHHhhh-------hcccccchhcCeeEEEecCCC-ccCHHHHHHHhcCCC
Confidence 8999999987642110000 00 000000 000011223376666665543 368888999999999
Q ss_pred c--EEEEeCCC
Q 012724 353 G--SLFLYSST 361 (457)
Q Consensus 353 G--~v~~~~~~ 361 (457)
| .++..+++
T Consensus 181 g~~~~~~~~~~ 191 (497)
T 1rrk_A 181 NEQHVCKVKDM 191 (497)
T ss_dssp TCCCEEETTCH
T ss_pred CcceEEEeCCH
Confidence 9 76666544
No 25
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=98.41 E-value=4.3e-06 Score=79.62 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=112.2
Q ss_pred CcEEEEEEECCCCh--hHH-HHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcccccc
Q 012724 121 RPVYVAAVDLSSSE--EFL-ELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l-~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~d 194 (457)
+.-++|+||.|.+. ..+ +.++++++..++.+. ++.+||||+|++.+... + +
T Consensus 18 ~~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~-------------~----------~ 74 (266)
T 4hqo_A 18 QVDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTEL-------------I----------R 74 (266)
T ss_dssp CEEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEE-------------E----------C
T ss_pred ceeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceE-------------E----------e
Confidence 34589999999985 334 578999999999886 68999999999865431 0 1
Q ss_pred ccccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEE
Q 012724 195 LEDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFA 274 (457)
Q Consensus 195 l~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~ 274 (457)
+. .+ ....+..+.+.|+.|+.... . ...+.+|.||..|..++...++.....-.||+
T Consensus 75 l~------~~---~~~~~~~~~~~i~~l~~~~~---~-----------~G~T~~~~AL~~a~~~l~~~~~r~~~~~~iIl 131 (266)
T 4hqo_A 75 LG------SG---QSIDKRQALSKVTELRKTYT---P-----------YGTTSMTAALDEVQKHLNDRVNREKAIQLVIL 131 (266)
T ss_dssp TT------SH---HHHCHHHHHHHHHHHHHHCC---C-----------CSCCCHHHHHHHHHHHHHTTCSCTTSEEEEEE
T ss_pred cC------CC---CccCHHHHHHHHHHhhhccC---C-----------CCCCCHHHHHHHHHHHHhhccccCCCCeEEEE
Confidence 11 11 01124556667777741100 0 13578999999999988764321112246888
Q ss_pred EecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccC--c
Q 012724 275 FLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIES--G 352 (457)
Q Consensus 275 f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~T--G 352 (457)
+++|.++- + .-..+.++.+.+.||.|-.+.++. ..+-..|..++... +
T Consensus 132 lTDG~~~d-~----------------------------~~~~~~a~~l~~~gi~i~~iGiG~-~~~~~~L~~iA~~~~~~ 181 (266)
T 4hqo_A 132 MTDGVPNS-K----------------------------YRALEVANKLKQRNVRLAVIGIGQ-GINHQFNRLIAGCRPRE 181 (266)
T ss_dssp EECSCCSC-H----------------------------HHHHHHHHHHHHTTCEEEEEECSS-SCCHHHHHHHHTCCTTC
T ss_pred EccCCCCC-c----------------------------hHHHHHHHHHHHCCCEEEEEecCc-ccCHHHHHHhhCCCCCC
Confidence 88887751 0 112457788888998777776654 45666678888764 4
Q ss_pred c--EEEEeCCCCCCcHHHHHHHHhccC
Q 012724 353 G--SLFLYSSTDDSTLPQDIYRMLSRP 377 (457)
Q Consensus 353 G--~v~~~~~~~~~~l~~dl~~~l~~~ 377 (457)
| .++++.+|+ .|. ++...|.+.
T Consensus 182 g~~~~~~~~d~~--~L~-~i~~~l~~~ 205 (266)
T 4hqo_A 182 PNCKFYSYADWN--EAV-ALIKPFIAK 205 (266)
T ss_dssp SSCTTEECSCHH--HHH-HHHHHHHCC
T ss_pred CCCCeEEecCHH--HHH-HHHHHHHhh
Confidence 3 677766553 243 444444444
No 26
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.41 E-value=1.4e-05 Score=71.25 Aligned_cols=164 Identities=11% Similarity=0.095 Sum_probs=103.2
Q ss_pred cEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC-CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcccccccccc
Q 012724 122 PVYVAAVDLSSSE--EFLELTRSALQAALEAVP-SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (457)
Q Consensus 122 p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~-~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~~ 198 (457)
.-.+|+||.|.+. ..++.+++.++..++.+. ++.|||+|+|++.++.. . ++.+
T Consensus 3 ~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~-------------~----------~l~~- 58 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE-------------F----------DFSD- 58 (179)
T ss_dssp EEEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE-------------E----------CHHH-
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE-------------E----------cCcc-
Confidence 3589999999985 457888999999998884 56799999999876431 0 1110
Q ss_pred ccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHH-hhccccCCC-ccccEEEEEe
Q 012724 199 MPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFN-YLGSEYGNT-FALARVFAFL 276 (457)
Q Consensus 199 ~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~-lL~~~~~~~-~~~gkIi~f~ 276 (457)
. ..++.+.++++.++... ..+.+|.||..|.. ++....+.+ ...-.|++++
T Consensus 59 ---------~-~~~~~~~~~~~~i~~~~-----------------g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillT 111 (179)
T 1mjn_A 59 ---------Y-VKRKDPDALLKHVKHML-----------------LLTNTFGAINYVATEVFREELGARPDATKVLIIIT 111 (179)
T ss_dssp ---------H-HHHCCHHHHHTTCCCCC-----------------BCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEE
T ss_pred ---------c-CCHHHHHHHHHhcccCC-----------------CCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEc
Confidence 0 01223455666665431 24679999999985 555332211 0123688899
Q ss_pred cCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccC----ccccccccccCc
Q 012724 277 SGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTD----LASLKFLSIESG 352 (457)
Q Consensus 277 ~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~----l~~l~~l~~~TG 352 (457)
+|.++.|.- . + .+.||.+-.+.++.. .+ ..+|..++..+|
T Consensus 112 DG~~~~~~~-~----------------------~------------~~~~i~i~~igvG~~-~~~~~~~~~L~~iA~~~~ 155 (179)
T 1mjn_A 112 DGEATDSGN-I----------------------D------------AAKDIIRYIIGIGKH-FQTKESQETLHKFASKPA 155 (179)
T ss_dssp SSCCSSCSC-C----------------------G------------GGTTSEEEEEEESGG-GCSHHHHHTTGGGSCSCH
T ss_pred CCCCCCCcc-h----------------------H------------HHCCCEEEEEEcccc-ccccccHHHHHHHhCCcc
Confidence 998875420 0 0 134666655555433 23 378999999998
Q ss_pred c-EEEEeCCCCC-CcHHHHHHH
Q 012724 353 G-SLFLYSSTDD-STLPQDIYR 372 (457)
Q Consensus 353 G-~v~~~~~~~~-~~l~~dl~~ 372 (457)
| .+|+.++|+. ..+.++|.+
T Consensus 156 ~~~~~~~~~~~~L~~i~~~i~~ 177 (179)
T 1mjn_A 156 SEFVKILDTFEKLKDLCTELQK 177 (179)
T ss_dssp HHHEEEESSGGGSCCHHHHHHH
T ss_pred HhcEEEeCCHHHHHHHHHHHHh
Confidence 8 4677777753 345556543
No 27
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=98.38 E-value=9.9e-06 Score=71.90 Aligned_cols=153 Identities=15% Similarity=0.082 Sum_probs=97.4
Q ss_pred CcEEEEEEECCCChh-HHHHHHHHHHHHHHh-CCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcccccccccc
Q 012724 121 RPVYVAAVDLSSSEE-FLELTRSALQAALEA-VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (457)
Q Consensus 121 ~p~~vFvID~s~~~~-~l~~~~~~l~~~l~~-l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~~ 198 (457)
+.-++|+||.|.+.. .....++.++..+.. +.++.+||+|+|++..+..- ++.
T Consensus 6 ~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~-----------------------~~~-- 60 (182)
T 1shu_X 6 AFDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATIIL-----------------------PLT-- 60 (182)
T ss_dssp CEEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE-----------------------EEE--
T ss_pred ceeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEEE-----------------------CCC--
Confidence 456899999999862 111234445555444 44689999999988654311 000
Q ss_pred ccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCCCccccEEEEEecC
Q 012724 199 MPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGNTFALARVFAFLSG 278 (457)
Q Consensus 199 ~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g 278 (457)
..++.+..+++.+..... ..++.++.||..|...+....+. .....|+++++|
T Consensus 61 -----------~~~~~~~~~l~~l~~~~~---------------~g~T~~~~al~~a~~~l~~~~~~-~~~~~iiliTDG 113 (182)
T 1shu_X 61 -----------GDRGKISKGLEDLKRVSP---------------VGETYIHEGLKLANEQIQKAGGL-KTSSIIIALTDG 113 (182)
T ss_dssp -----------CCHHHHHHHHHHHHTCCC---------------CSCCCHHHHHHHHHHHHHHHTGG-GSCEEEEEEECC
T ss_pred -----------CCHHHHHHHHHhcccCCC---------------CCCchHHHHHHHHHHHHHhccCC-CCCeEEEEECCC
Confidence 123345556666653210 13577999999999998654210 013588889999
Q ss_pred CCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccE
Q 012724 279 PPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGS 354 (457)
Q Consensus 279 ~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~ 354 (457)
.++.+. .....+.++.+.+.+|.+..+.++ ..+...|..++..+||.
T Consensus 114 ~~~~~~---------------------------~~~~~~~~~~~~~~~i~i~~igvg--~~~~~~L~~ia~~~~~~ 160 (182)
T 1shu_X 114 KLDGLV---------------------------PSYAEKEAKISRSLGASVYCVGVL--DFEQAQLERIADSKEQV 160 (182)
T ss_dssp CCCTTH---------------------------HHHHHHHHHHHHHTTCEEEEEECS--SCCHHHHHHHSSSGGGE
T ss_pred CcCCCC---------------------------chhHHHHHHHHHhCCCEEEEEeCC--cCCHHHHHHHhCCCCce
Confidence 875210 122345777888889887777665 56778899999999875
No 28
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=98.35 E-value=3e-06 Score=75.56 Aligned_cols=160 Identities=13% Similarity=0.041 Sum_probs=102.0
Q ss_pred cEEEEEEECCCCh-hHHHHHHHHHHHHHHh-CCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccccc
Q 012724 122 PVYVAAVDLSSSE-EFLELTRSALQAALEA-VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVM 199 (457)
Q Consensus 122 p~~vFvID~s~~~-~~l~~~~~~l~~~l~~-l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~~~ 199 (457)
.-++|+||.|.+. +..+.+++.++..++. +.++.+||||+|++..+..- ++
T Consensus 8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~~-----------------------~l---- 60 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTLM-----------------------KL---- 60 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEEE-----------------------EE----
T ss_pred eeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEEe-----------------------cc----
Confidence 3589999999986 2345566666666665 45688999999988654311 11
Q ss_pred cccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhcccc-CCCccccEEEEEecC
Q 012724 200 PLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEY-GNTFALARVFAFLSG 278 (457)
Q Consensus 200 p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~-~~~~~~gkIi~f~~g 278 (457)
. +.++.+.+.++.|+.... ...+.+|.||..|...|.... +.......|+++++|
T Consensus 61 --~-------~~~~~~~~~i~~l~~~~~---------------~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG 116 (185)
T 3n2n_F 61 --T-------EDREQIRQGLEELQKVLP---------------GGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDG 116 (185)
T ss_dssp --E-------CCHHHHHHHHHHHHTCCC---------------CSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECC
T ss_pred --C-------CCHHHHHHHHHHHhhhcC---------------CCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCC
Confidence 1 134455666777764311 145789999999998773211 100012478888888
Q ss_pred CCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCccEEEEe
Q 012724 279 PPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESGGSLFLY 358 (457)
Q Consensus 279 ~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TGG~v~~~ 358 (457)
.++.++. .-..+.+..+.+.||.+..+.++ ..+..+|..++.. +|.+|+.
T Consensus 117 ~~~~~~~---------------------------~~~~~~~~~~~~~gi~i~~igvg--~~~~~~L~~iA~~-~~~~~~~ 166 (185)
T 3n2n_F 117 ELHEDLF---------------------------FYSEREANRSRDLGAIVYAVGVK--DFNETQLARIADS-KDHVFPV 166 (185)
T ss_dssp CCCHHHH---------------------------HHHHHHHHHHHHTTEEEEEEECS--SCCHHHHTTTSSS-GGGEEEH
T ss_pred CCCCCcc---------------------------cchHHHHHHHHHCCCEEEEEEec--cCCHHHHHHHhCC-CCCeEEe
Confidence 7642210 01145778888889777766665 6788889999865 5777776
Q ss_pred CC-CC
Q 012724 359 SS-TD 362 (457)
Q Consensus 359 ~~-~~ 362 (457)
.+ |+
T Consensus 167 ~~~~~ 171 (185)
T 3n2n_F 167 NDGFQ 171 (185)
T ss_dssp HHHHH
T ss_pred ccHHH
Confidence 64 53
No 29
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.24 E-value=1.9e-05 Score=71.50 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=95.2
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhC---CCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAV---PSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l---~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl 195 (457)
+--++|+||.|.+. ..++.++++++..++.+ +++.|||||+|++.++..- ++
T Consensus 21 ~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~~-----------------------~l 77 (199)
T 3zqk_A 21 VLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVEY-----------------------PF 77 (199)
T ss_dssp CCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEEE-----------------------CT
T ss_pred CcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEEE-----------------------ec
Confidence 34589999999985 45788999999999988 5789999999998765310 11
Q ss_pred cccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHh-hccccCCC-ccccEEE
Q 012724 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNY-LGSEYGNT-FALARVF 273 (457)
Q Consensus 196 ~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~l-L~~~~~~~-~~~gkIi 273 (457)
. .+ ..++.+.+.++.++... ...+.+|.||..|.+. +....+.+ ...-.|+
T Consensus 78 ~------~~-----~~~~~~~~~i~~l~~~g----------------g~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~ii 130 (199)
T 3zqk_A 78 S------EA-----QSKGDILQRLREIRYQG----------------GNRTNTGLALRYLSDHSFLVSQGDREQAPNLVY 130 (199)
T ss_dssp T------SC-----CCHHHHHHHHHHCCCCC----------------CSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEE
T ss_pred C------Cc-----CCHHHHHHHHHhCcCCC----------------CCcChHHHHHHHHHHHhhCcccCCCCCCCeEEE
Confidence 1 00 12345666777775431 0236799999999874 33222211 0113577
Q ss_pred EEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCC-ccCccccccccccCc
Q 012724 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE-YTDLASLKFLSIESG 352 (457)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~-~~~l~~l~~l~~~TG 352 (457)
++++|.++-. . .+ . ..+| .+|+++-. ..+..+|..++. +
T Consensus 131 llTDG~~~d~------------v------~~-----~-------------~~~v--~v~~iGiG~~~~~~~L~~iA~--~ 170 (199)
T 3zqk_A 131 MVTGNPASDE------------I------KR-----L-------------PGDI--QVVPIGVGPNANVQELERIGW--P 170 (199)
T ss_dssp EEECSCCSSC------------C------CC-----C-------------CTTE--EEEEEEESTTCCHHHHHHHHT--T
T ss_pred EEeCCCCchH------------H------HH-----H-------------hCCC--EEEEEEcCCCCCHHHHHHHhC--C
Confidence 7787753210 0 00 0 1455 45544433 678889999997 5
Q ss_pred cEEEEeCCCCC
Q 012724 353 GSLFLYSSTDD 363 (457)
Q Consensus 353 G~v~~~~~~~~ 363 (457)
|..++.++|+.
T Consensus 171 ~~~~~~~~~~~ 181 (199)
T 3zqk_A 171 NAPILIQDFET 181 (199)
T ss_dssp SCCEEESCTTT
T ss_pred CceEEeCCHHH
Confidence 55667777754
No 30
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.11 E-value=6.9e-05 Score=66.49 Aligned_cols=138 Identities=17% Similarity=0.116 Sum_probs=89.6
Q ss_pred CcEEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc
Q 012724 121 RPVYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL 195 (457)
Q Consensus 121 ~p~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl 195 (457)
+.-++|+||.|.+. ..++.+++++...++.++ ++.+||||+|++.++.. . ++
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~-------------~----------~l 73 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQ-------------W----------DL 73 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE-------------E----------CT
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEE-------------E----------eC
Confidence 45699999999985 467888999999999885 45899999999876421 0 11
Q ss_pred cccccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccc--cCCCccccEEE
Q 012724 196 EDVMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE--YGNTFALARVF 273 (457)
Q Consensus 196 ~~~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~--~~~~~~~gkIi 273 (457)
. .+- ...++.+.+.++.++.. ...+.+|.||+.|.+.|... |........|+
T Consensus 74 ~------~~~---~~~~~~~~~~i~~l~~~-----------------~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~ii 127 (178)
T 2xgg_A 74 Q------SPN---AVDKQLAAHAVLDMPYK-----------------KGSTNTSDGLKACKQILFTGSRPGREHVPKLVI 127 (178)
T ss_dssp T------SGG---GSCHHHHHHHHHHCCCC-----------------CCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEE
T ss_pred C------CCC---ccCHHHHHHHHHhCCCC-----------------CCCccHHHHHHHHHHHhcCcccCCCCCCCEEEE
Confidence 1 100 01345566677777521 13467999999999876321 11111125788
Q ss_pred EEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecC
Q 012724 274 AFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN 336 (457)
Q Consensus 274 ~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~ 336 (457)
++++|.++.|. -..+.++.+.+.||.|..+.++.
T Consensus 128 llTDG~~~~~~-----------------------------~~~~~~~~l~~~gi~v~~igvG~ 161 (178)
T 2xgg_A 128 GMTDGESDSDF-----------------------------RTVRAAKEIRELGGIVTVLAVGH 161 (178)
T ss_dssp EEESSCCCHHH-----------------------------HHSHHHHHHHHTTCEEEEEECC-
T ss_pred EEcCCCCCCCc-----------------------------cHHHHHHHHHHCCCEEEEEEcCC
Confidence 89999876320 12357778888898777776543
No 31
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.10 E-value=3.7e-06 Score=91.62 Aligned_cols=177 Identities=11% Similarity=0.139 Sum_probs=104.9
Q ss_pred EEEEEEECCCCh--hHHHHHHHHHHHHHHhCC---CCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccc
Q 012724 123 VYVAAVDLSSSE--EFLELTRSALQAALEAVP---SGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELED 197 (457)
Q Consensus 123 ~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~ 197 (457)
-++||||.|.+. ..++.++++++..++.++ .+.|||||+|++..... + ++.
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~-------------~----------~l~- 300 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIW-------------V----------KVS- 300 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEE-------------E----------CTT-
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCcee-------------E----------eec-
Confidence 489999999986 457888888888887664 56899999998864321 0 111
Q ss_pred cccccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccc--cCCCc---cccEE
Q 012724 198 VMPLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSE--YGNTF---ALARV 272 (457)
Q Consensus 198 ~~p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~--~~~~~---~~gkI 272 (457)
.+ -...++.+.+.|+.|+.... .. ..++.+|.||..|.+.|... +.... ..-.|
T Consensus 301 -----~~---~~~~~~~~~~~i~~l~~~~~---~~----------~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~i 359 (741)
T 3hrz_D 301 -----EA---DSSNADWVTKQLNEINYEDH---KL----------KSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVI 359 (741)
T ss_dssp -----SG---GGGCHHHHHHHHTTCCGGGG---SS----------SCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEE
T ss_pred -----cc---CCcCHHHHHHHHHhcccccc---cC----------CCChHHHHHHHHHHHHHhhhhhccccchhccCeEE
Confidence 00 01134556666776653110 00 14678999999999998321 10000 01258
Q ss_pred EEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCccCccccccccccCc
Q 012724 273 FAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEYTDLASLKFLSIESG 352 (457)
Q Consensus 273 i~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~~~l~~l~~l~~~TG 352 (457)
|++++|.+|.|..-....+ .+ .+.. ...+.++.+.+.+|.|..+.++. .++..+|..|+..+|
T Consensus 360 illTDG~~n~g~~p~~~~~---~i------~~~~-------~~~~~a~~~~~~gi~i~~igvG~-~~~~~~L~~ia~~~~ 422 (741)
T 3hrz_D 360 ILMTDGLHNMGGDPITVID---EI------RDLL-------YIGKDRKNPREDYLDVYVFGVGP-LVNQVNINALASKKD 422 (741)
T ss_dssp EEEECSCCCSSSCTHHHHH---HH------HHHT-------TCSSCTTCCCGGGEEEEEEECSS-SCCHHHHHHHSCCCT
T ss_pred EEECCCccccCCCchHHHH---HH------HHHh-------hcccccccccccCeeEEEEeCCC-cCCHHHHHHHhcCCC
Confidence 8999999998752111000 00 0000 00112234455676666655543 477888999999999
Q ss_pred cE--EEEeCCC
Q 012724 353 GS--LFLYSST 361 (457)
Q Consensus 353 G~--v~~~~~~ 361 (457)
|. +|..+++
T Consensus 423 g~~~~~~~~~~ 433 (741)
T 3hrz_D 423 NEQHVFKVKDM 433 (741)
T ss_dssp TCCCEECBSSH
T ss_pred CcceEEEeCCH
Confidence 96 6655554
No 32
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=97.93 E-value=3.3e-05 Score=81.47 Aligned_cols=202 Identities=12% Similarity=0.150 Sum_probs=113.3
Q ss_pred cEEEEEEECCCCh--------hHHHHHHHHHHHHHHh---CCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcc
Q 012724 122 PVYVAAVDLSSSE--------EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDT 190 (457)
Q Consensus 122 p~~vFvID~s~~~--------~~l~~~~~~l~~~l~~---l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~ 190 (457)
-..+|+||+|.++ ..|+.+++++...++. ..++.+||||+|++.-.--.+..... -.++.
T Consensus 8 e~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d~~-y~~i~-------- 78 (565)
T 1jey_B 8 AAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGGDQ-YQNIT-------- 78 (565)
T ss_dssp EEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTTTC-STTEE--------
T ss_pred eEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccccC-CCceE--------
Confidence 3689999999875 2688889999888873 56788999999987532111100000 00000
Q ss_pred ccccccccccccccccchHhHHHHHHHHHHh-cCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhcccc-CCCcc
Q 012724 191 LSLELEDVMPLSQFLAPVETFKENITSALET-LRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEY-GNTFA 268 (457)
Q Consensus 191 v~~dl~~~~p~~~~l~~~~~~~~~i~~~l~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~-~~~~~ 268 (457)
+..+|+ . . ....+. .|+. |... .....+|.||.+|..+|.... ...+.
T Consensus 79 vl~~l~------~----~--~~~~l~-~l~~~l~~~-----------------~~~t~i~~al~~A~~~l~~~~~~~k~~ 128 (565)
T 1jey_B 79 VHRHLM------L----P--DFDLLE-DIESKIQPG-----------------SQQADFLDALIVSMDVIQHETIGKKFE 128 (565)
T ss_dssp EEEEEE------C----C--CHHHHH-HHHTTCCCC-----------------SSCCCHHHHHHHHHHHHHHHSSSSCCS
T ss_pred EeecCC------C----C--CHHHHH-HHHhhccCC-----------------CccccHHHHHHHHHHHHHHHhhccccc
Confidence 011111 0 0 112222 2333 3211 024679999999999997651 11011
Q ss_pred ccEEEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEE-EeeecCCc----c----
Q 012724 269 LARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVD-IFAITNEY----T---- 339 (457)
Q Consensus 269 ~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvd-lf~~~~~~----~---- 339 (457)
.=+|++||+|--+.|.. -..++++.+.+.||.|+ ++.++.+. +
T Consensus 129 ~krIiLlTDg~~~~~~~----------------------------~~~~~a~~l~~~gI~i~~vig~g~~~~~~~~~~~~ 180 (565)
T 1jey_B 129 KRHIEIFTDLSSRFSKS----------------------------QLDIIIHSLKKCDISLQFFLPFSLGKEDGSGDRGD 180 (565)
T ss_dssp EEEEEEECCCCSCCCCT----------------------------THHHHHHHHHHTTEEEEEEESSCCC----------
T ss_pred ccEEEEEeCCCCCCCHH----------------------------HHHHHHHHHHhcCcEEEEEeccCCCcCCccccccc
Confidence 13899999886554311 12468999999999999 65444321 1
Q ss_pred -----------------------CccccccccccCcc-----EEEEeCCCCCCcHHHHHHHHhccCcceeeEEEEEcCCC
Q 012724 340 -----------------------DLASLKFLSIESGG-----SLFLYSSTDDSTLPQDIYRMLSRPYAFNCIMRLRTSSE 391 (457)
Q Consensus 340 -----------------------~l~~l~~l~~~TGG-----~v~~~~~~~~~~l~~dl~~~l~~~~~~~~~lrvR~S~g 391 (457)
+...|..++..||| .++...+.-. .+ .-+++...+...|.+.+++- ++
T Consensus 181 ~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~-~l-~~~k~~~~r~~~~~g~l~lg--~~ 256 (565)
T 1jey_B 181 GPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLR-KL-CVFKKIERHSIHWPCRLTIG--SN 256 (565)
T ss_dssp CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTT-SS-TTTGGGCCCCCCEEEEEEET--TT
T ss_pred ccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHHH-Hh-ccCcceeecccccccceEEC--CC
Confidence 11236778888888 6655432111 01 11223344555788888774 34
Q ss_pred eeE
Q 012724 392 FKP 394 (457)
Q Consensus 392 l~i 394 (457)
+.|
T Consensus 257 v~I 259 (565)
T 1jey_B 257 LSI 259 (565)
T ss_dssp EEE
T ss_pred cEE
Confidence 444
No 33
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=97.79 E-value=4.5e-05 Score=86.27 Aligned_cols=161 Identities=19% Similarity=0.186 Sum_probs=101.8
Q ss_pred EEEEEEECCCCh--hHHHHHHHHHHHHHHhCCCC-cEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccccccc
Q 012724 123 VYVAAVDLSSSE--EFLELTRSALQAALEAVPSG-ALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDVM 199 (457)
Q Consensus 123 ~~vFvID~s~~~--~~l~~~~~~l~~~l~~l~~~-~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~~~ 199 (457)
-.+|+||.|.+. ..++.++++++..++.+.++ .|||||+|++.++..- ++.+.
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~~-----------------------~lt~~- 187 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTHF-----------------------TFEEF- 187 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEEE-----------------------CSHHH-
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEEe-----------------------cCccc-
Confidence 489999999985 45788999999999988754 8999999998754321 11100
Q ss_pred cccccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhh-ccccCCC-ccccEEEEEec
Q 012724 200 PLSQFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYL-GSEYGNT-FALARVFAFLS 277 (457)
Q Consensus 200 p~~~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL-~~~~~~~-~~~gkIi~f~~ 277 (457)
. .++.+.++++.|+.. ...+.+|.||..|...+ ....+.+ ...-.||++++
T Consensus 188 ---------~-~~~~l~~ai~~i~~~-----------------gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTD 240 (1095)
T 3k6s_A 188 ---------R-RSSNPLSLLASVHQL-----------------QGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITD 240 (1095)
T ss_dssp ---------H-SCSCGGGGTTTCCCC-----------------CSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEES
T ss_pred ---------C-CHHHHHHHHhhhhcc-----------------cCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeC
Confidence 0 001112233444332 13467999999998754 3222211 01135788888
Q ss_pred CCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCCc---cCccccccccccCcc-
Q 012724 278 GPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNEY---TDLASLKFLSIESGG- 353 (457)
Q Consensus 278 g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~~---~~l~~l~~l~~~TGG- 353 (457)
|.++..+. -+.+.++++.+.||.+-.+.++..+ ++..+|..++..++|
T Consensus 241 G~~~~d~~----------------------------~~~~~a~~~r~~GI~i~aIGVG~~~~~~~d~~eL~~IAs~p~g~ 292 (1095)
T 3k6s_A 241 GKKEGDSL----------------------------DYKDVIPMADAAGIIRYAIGVGLAFQNRNSWKELNDIASKPSQE 292 (1095)
T ss_dssp SCCBSCSS----------------------------CHHHHHHHHHHHCEEECCEEBSSGGGSTTSSHHHHTTSCSSTTT
T ss_pred CCcCCCch----------------------------hHHHHHHHHHHCCCEEEEEecccccccccCHHHHHHHHcCCCCc
Confidence 87642111 1245677788888776655555442 588999999999887
Q ss_pred EEEEeCCCC
Q 012724 354 SLFLYSSTD 362 (457)
Q Consensus 354 ~v~~~~~~~ 362 (457)
.++..++++
T Consensus 293 ~vf~v~d~~ 301 (1095)
T 3k6s_A 293 HIFKVEDFD 301 (1095)
T ss_dssp SCCCBSCSG
T ss_pred eEEEcCCHH
Confidence 666666664
No 34
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.12 E-value=0.64 Score=49.66 Aligned_cols=230 Identities=17% Similarity=0.202 Sum_probs=108.8
Q ss_pred EEEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCccccccc-cc
Q 012724 123 VYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLEL-ED 197 (457)
Q Consensus 123 ~~vFvID~s~~~-~~l~~~~---~~l~~~l~~l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl-~~ 197 (457)
=.+|++|+|.++ ..++.|+ ..|...|..+.++.||||..|-+..-. .. +.+ ....+ ++
T Consensus 113 Dly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~-P~---------~~~-------~p~~~~~~ 175 (690)
T 3fcs_B 113 DIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVS-PY---------MYI-------SPPEALEN 175 (690)
T ss_dssp EEEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSST-TT---------SCC-------CSTTTTTC
T ss_pred cEEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccC-Cc---------ccc-------ChhhhccC
Confidence 489999999997 4455544 444455566678899999999764321 00 000 00111 11
Q ss_pred --------ccc-cc-ccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHH--HhhccccCC
Q 012724 198 --------VMP-LS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYGN 265 (457)
Q Consensus 198 --------~~p-~~-~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~~~ 265 (457)
-.| +. .-..++.+....+.+.++.+.... + .| .+...|-+.+++|+ .-+.=..+
T Consensus 176 pc~~~~~~c~~~f~f~~~l~lt~~~~~f~~~v~~~~isg--n--------~D---~PE~g~dAl~qa~~c~~~igWr~~- 241 (690)
T 3fcs_B 176 PCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR--N--------RD---APEGGFDAIMQATVCDEKIGWRND- 241 (690)
T ss_dssp TTSSSSSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCC--C--------SS---SSBCHHHHHHHHHHCHHHHTCCSS-
T ss_pred CCcCCCCCCCCCccceeecccCCCHHHHHHHhhceeccC--C--------CC---CCchHHHHHHHHhhcccccCCCCC-
Confidence 011 11 112456555566666676554321 1 11 13445655556653 33321111
Q ss_pred CccccEEEEEecCCCCC--CCCccccccccCccCCCCccccccCCCcch--H--HHHHHHHHHHHcceEEEEeeecCCcc
Q 012724 266 TFALARVFAFLSGPPDH--GAGQLDTRRYGEQYASKGEDADRALLPEQT--P--FYKDLAAVAVQAGVCVDIFAITNEYT 339 (457)
Q Consensus 266 ~~~~gkIi~f~~g~pt~--GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~--fY~~la~~~~~~~isvdlf~~~~~~~ 339 (457)
.-|+|+|++-.+-. |-|++...-..+....|- +... ++..+. + --.+|++++.+++|.+ ||+......
T Consensus 242 ---a~rllv~~TDa~~H~agDg~l~gi~~pnd~~chl-~~~~-~y~~s~~~DypSi~ql~~~l~~~~i~~-ifavt~~~~ 315 (690)
T 3fcs_B 242 ---ASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHV-GSDN-HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTENVV 315 (690)
T ss_dssp ---SEEEEEEEESSCBCCTTGGGGGTCCSCCCCCCCB-CTTC-BBGGGGTSCCCCHHHHHHHHHHTTCEE-EEEEEGGGH
T ss_pred ---ceEEEEEECCCccccCCCccccceecCCCcceee-cCCC-ccccccccCCCCHHHHHHHHHHcCCeE-EEEEeCCch
Confidence 25888888766644 556543221111111110 0000 111111 1 1357888888898844 666655544
Q ss_pred Ccccccccc-ccCccEEEEeCCCCC--CcHHHHHHHHhccCcceeeEEEEEc-CCCeeEe
Q 012724 340 DLASLKFLS-IESGGSLFLYSSTDD--STLPQDIYRMLSRPYAFNCIMRLRT-SSEFKPG 395 (457)
Q Consensus 340 ~l~~l~~l~-~~TGG~v~~~~~~~~--~~l~~dl~~~l~~~~~~~~~lrvR~-S~gl~i~ 395 (457)
++. ..|+ ..+|+.+-....-.. ..+..+-+..|.+ .+.|+... ++|++|+
T Consensus 316 ~~y--~~l~~~i~~s~v~~l~~dSsni~~li~~~y~~i~s----~v~l~~~~~p~~~~v~ 369 (690)
T 3fcs_B 316 NLY--QNYSELIPGTTVGVLSMDSSNVLQLIVDAYGKIRS----KVELEVRDLPEELSLS 369 (690)
T ss_dssp HHH--HHHHHHSTTCEEEEECTTCTTHHHHHHHHHHHHTT----CEEEEEESCCTTEEEE
T ss_pred hhH--HHHHhhcCCceeeeeccccHHHHHHHHHHHHhhhc----ceeeeccCCCCcceEE
Confidence 432 2333 234555544443221 1344444444433 34444433 4455544
No 35
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=95.94 E-value=0.027 Score=62.09 Aligned_cols=47 Identities=21% Similarity=0.144 Sum_probs=37.4
Q ss_pred CcEEEEEEECCCCh---h-----HHHHHHHHHHHHHHhCC--CCcEEEEEEecceeE
Q 012724 121 RPVYVAAVDLSSSE---E-----FLELTRSALQAALEAVP--SGALFGLATFSHKIG 167 (457)
Q Consensus 121 ~p~~vFvID~s~~~---~-----~l~~~~~~l~~~l~~l~--~~~~vglItf~~~V~ 167 (457)
+--.|||||+|.++ . .++.++++++..++.|. ++.|||||+|++.+.
T Consensus 224 ~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 224 PLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 44599999999986 1 46778888888888664 478999999998653
No 36
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=95.93 E-value=0.086 Score=55.80 Aligned_cols=155 Identities=11% Similarity=0.156 Sum_probs=86.5
Q ss_pred EEEEEEECCCCh---------hHHHHHHHHHHHHHHh---CCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcc
Q 012724 123 VYVAAVDLSSSE---------EFLELTRSALQAALEA---VPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDT 190 (457)
Q Consensus 123 ~~vFvID~s~~~---------~~l~~~~~~l~~~l~~---l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~ 190 (457)
..+|+||+|.++ ..|+.+++.+...++. -.++.+||||.|++.-+- +.... .++.
T Consensus 37 ~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~----n~l~~-d~i~-------- 103 (609)
T 1jey_A 37 SLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDK----NSVNF-KNIY-------- 103 (609)
T ss_dssp EEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCB----STTCC-TTEE--------
T ss_pred EEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCC----CcCCC-CCeE--------
Confidence 589999999864 2688888888888774 245679999999886421 11100 0111
Q ss_pred ccccccccccccccccchHhHHHHHHHHHH-----hcCCCCCcccccccccCCCCcccCCcchHHHHHHHHHhhccccCC
Q 012724 191 LSLELEDVMPLSQFLAPVETFKENITSALE-----TLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLFNYLGSEYGN 265 (457)
Q Consensus 191 v~~dl~~~~p~~~~l~~~~~~~~~i~~~l~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~~lL~~~~~~ 265 (457)
+..+|+.+ ... ....|.++++ .+....+. ..+..+|.||.+|.+++.....
T Consensus 104 v~~~L~~~--------~~~-~ik~l~~l~~~~~~~~~~~~~g~--------------~~~t~l~daL~~a~~~f~~~~~- 159 (609)
T 1jey_A 104 VLQELDNP--------GAK-RILELDQFKGQQGQKRFQDMMGH--------------GSDYSLSEVLWVCANLFSDVQF- 159 (609)
T ss_dssp EEEEEECC--------CHH-HHHHHHTTSHHHHHHHHHHHHCC--------------SCCCCHHHHHHHHHHHHHTCSS-
T ss_pred EEecCCCC--------CHH-HHHHHHHHhhcccchhhhhhcCC--------------CCCCCHHHHHHHHHHHHHhhch-
Confidence 11122210 000 1111111111 00000000 0246799999999999976421
Q ss_pred CccccEEEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecCC
Q 012724 266 TFALARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITNE 337 (457)
Q Consensus 266 ~~~~gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~~ 337 (457)
.+..=+|++||+|--+.|.. . ....-....|+.+.+.||.|.+|.++..
T Consensus 160 k~~~k~IiL~TDg~~p~~~~--~---------------------~~~~~~~~~a~~l~~~gI~i~~igig~~ 208 (609)
T 1jey_A 160 KMSHKRIMLFTNEDNPHGND--S---------------------AKASRARTKAGDLRDTGIFLDLMHLKKP 208 (609)
T ss_dssp CEEEEEEEEEESCSCTTTTC--H---------------------HHHHHHHHHHHHHHHHTEEEEEEEBCCT
T ss_pred hhcCCEEEEEcCCCCCCCCc--h---------------------HHHHHHHHHHHHHHhcCcEEEEEecCCC
Confidence 11124899999986544310 0 0011235789999999999999877644
No 37
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=95.55 E-value=0.03 Score=58.38 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=28.6
Q ss_pred CCcEEEEEEECCCChhH------HHHHHHHHHHHHHhCCCCcEEEEEEecce
Q 012724 120 ARPVYVAAVDLSSSEEF------LELTRSALQAALEAVPSGALFGLATFSHK 165 (457)
Q Consensus 120 ~~p~~vFvID~s~~~~~------l~~~~~~l~~~l~~l~~~~~vglItf~~~ 165 (457)
.+..++|+||+|.++.. +.....++..++..+.++.+||||+|++.
T Consensus 367 ~~~~v~lvvD~SgSM~~~~~~~~l~~~~~Aa~l~~~~~~~~d~vglv~Fs~~ 418 (538)
T 1yvr_A 367 TGKRFLLAIDVSASMNQRVLGSILNASVVAAAMCMLVARTEKDSHMVAFSDE 418 (538)
T ss_dssp CCCCEEEEEECSGGGGSBSTTSSCBHHHHHHHHHHHHHHHCSSEEEEEESSS
T ss_pred CCceEEEEEECccccCCCCCCCcHHHHHHHHHHHHHHhccCCceEEEEECCC
Confidence 34578999999998621 33322222223333445679999999863
No 38
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=95.11 E-value=3.2 Score=41.91 Aligned_cols=229 Identities=17% Similarity=0.175 Sum_probs=110.1
Q ss_pred cEEEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEEecceeE-EEEccCCCcceeeeeeCCCCCcccccc-c
Q 012724 122 PVYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHKIG-LYDVQGAIPVVKNVFIPSDTEDTLSLE-L 195 (457)
Q Consensus 122 p~~vFvID~s~~~-~~l~~~~---~~l~~~l~~l~~~~~vglItf~~~V~-~y~l~~~~~~~~~v~~~~~~~~~v~~d-l 195 (457)
-=.+|++|+|.++ ..++.++ ..|...|..+..+.||||..|-+..- =|- +. .... +
T Consensus 112 vDLy~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~---------------~~---~p~~~l 173 (472)
T 3t3p_B 112 VDIYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYM---------------YI---SPPEAL 173 (472)
T ss_dssp EEEEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTS---------------CC---CSHHHH
T ss_pred ceEEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccc---------------cC---Chhhhh
Confidence 3489999999997 4455544 44445555666789999999955321 010 00 0000 1
Q ss_pred ccc--------c-ccc-ccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHH--Hhhcccc
Q 012724 196 EDV--------M-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEY 263 (457)
Q Consensus 196 ~~~--------~-p~~-~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~ 263 (457)
+++ . |+. ....++.+....+.+.+..+.-.. + .| .+...|-+-+++|+ +-+.= .
T Consensus 174 ~nPc~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSG--n--------~D---~PEgg~dAl~qaavC~~~igW-R 239 (472)
T 3t3p_B 174 ENPCYDMKTTCLPMFGYKHVLTLTDQVTRFNEEVKKQSVSR--N--------RD---APEGGFDAIMQATVCDEKIGW-R 239 (472)
T ss_dssp HCTTTTTTSCCCCCCSEEEEEEEESCHHHHHHHHHHCCCCC--C--------SS---SSBCHHHHHHHHHHCHHHHTC-C
T ss_pred cCCCcccccCCCCCcceeEeeccCCCHHHHHHHHhhccccC--C--------CC---CCchHHHHHHHHhcchhhcCC-C
Confidence 111 1 111 113456566666777777764431 1 11 13455666666664 22321 1
Q ss_pred CCCccccEEEEEecCCCC--CCCCccccccccCccCCCCccccccCCCcc----hHHHHHHHHHHHHcceEEEEeeecCC
Q 012724 264 GNTFALARVFAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPEQ----TPFYKDLAAVAVQAGVCVDIFAITNE 337 (457)
Q Consensus 264 ~~~~~~gkIi~f~~g~pt--~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~----~~fY~~la~~~~~~~isvdlf~~~~~ 337 (457)
. ..-|+++|++-.+- .|-|++...-.++....|-.+ .. .+..+ -.-..+|.+.+.+++|.+ ||+.+..
T Consensus 240 ~---~a~rllV~~TDa~~H~agDgkL~GIv~pnDg~CHL~~-~~-~Y~~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~ 313 (472)
T 3t3p_B 240 N---DASHLLVFTTDAKTHIALDGRLAGIVQPNDGQCHVGS-DN-HYSASTTMDYPSLGLMTEKLSQKNINL-IFAVTEN 313 (472)
T ss_dssp S---SSEEEEEEEESSCBCCTTGGGGGTCCCCCCCCCCBCT-TC-BBTTTTTSCCCCHHHHHHHHHHTTCEE-EEEECGG
T ss_pred C---CceEEEEEECCCCcCcCCCccccceecCCCCceEECC-CC-cccccccCCCCCHHHHHHHHHhcCccE-EEEEecc
Confidence 1 12588888876653 366766432211111111110 00 11111 112457888888888654 7877665
Q ss_pred ccCcccccccccc-CccEEEEeCCCCCC---cHHHHHHHHhccCcceeeEEEEEc-CCCeeEe
Q 012724 338 YTDLASLKFLSIE-SGGSLFLYSSTDDS---TLPQDIYRMLSRPYAFNCIMRLRT-SSEFKPG 395 (457)
Q Consensus 338 ~~~l~~l~~l~~~-TGG~v~~~~~~~~~---~l~~dl~~~l~~~~~~~~~lrvR~-S~gl~i~ 395 (457)
..++. ..|+.. .|+.+-.... |.+ .|..+-+..|.++ +.|+... +.+++|+
T Consensus 314 ~~~~Y--~~L~~~ip~s~vg~L~~-dSsNiv~LI~~aY~~i~s~----V~l~~~~~p~~l~v~ 369 (472)
T 3t3p_B 314 VVNLY--QNYSELIPGTTVGVLSM-DSSNVLQLIVDAYGKIRSK----VELEVRDLPEELSLS 369 (472)
T ss_dssp GHHHH--HHHHHTSTTCEEEECCT-TSTTHHHHHHHHHHHHTTC----EEEEEESCCTTEEEE
T ss_pred chhHH--HHHHHhCCCceeeeccc-cchhHHHHHHHHHHHhheE----EEEeeCCCCCcEEEE
Confidence 54432 233332 2334333332 222 3444555555443 3444332 4455544
No 39
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=94.85 E-value=0.034 Score=51.32 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=38.0
Q ss_pred CcEEEEEEECCCCh-hHHHHHHHHHHHHHHhCC---CCcEEEEEEecce
Q 012724 121 RPVYVAAVDLSSSE-EFLELTRSALQAALEAVP---SGALFGLATFSHK 165 (457)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~~~l~~~l~~l~---~~~~vglItf~~~ 165 (457)
+.-+||+||+|.+. +.++.++.++...+..++ .+.+||||+|+..
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~ 182 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGK 182 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCS
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCC
Confidence 45689999999985 678999999999888765 4689999999974
No 40
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=92.51 E-value=0.47 Score=49.27 Aligned_cols=32 Identities=6% Similarity=-0.037 Sum_probs=22.5
Q ss_pred CcchHHHHHHHHHhhccccCCCccccEEEEEecCCCCCC
Q 012724 245 GRGFGLAMESLFNYLGSEYGNTFALARVFAFLSGPPDHG 283 (457)
Q Consensus 245 ~~~~G~Al~~a~~lL~~~~~~~~~~gkIi~f~~g~pt~G 283 (457)
++.++.||..|...... ...|++++++.-+.|
T Consensus 440 gTdi~~~l~~a~~~~~~-------~~~vIliTD~~~~~g 471 (535)
T 2nvo_A 440 GTDCAQPILWAAQERLD-------VDTFVVYTDNETWAG 471 (535)
T ss_dssp CCCTTHHHHHHHHTTCC-------CSEEEEEESSCCCCC
T ss_pred CccHHHHHHHHHHhcCC-------CCEEEEEeCCCccCC
Confidence 45688888877654322 268999999977665
No 41
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=92.46 E-value=9.7 Score=38.19 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=93.6
Q ss_pred CcE-EEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEEecce-eEEEEccCCCcceeeeeeCCCCCcccccc
Q 012724 121 RPV-YVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHK-IGLYDVQGAIPVVKNVFIPSDTEDTLSLE 194 (457)
Q Consensus 121 ~p~-~vFvID~s~~~-~~l~~~~---~~l~~~l~~l~~~~~vglItf~~~-V~~y~l~~~~~~~~~v~~~~~~~~~v~~d 194 (457)
-|+ .+|++|+|.++ ..++.++ ..|...|..+-.+.||||..|-+. |.=|.-.. |.... ..-.+
T Consensus 121 yPVDLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~----------p~~~~-nPC~~ 189 (454)
T 3vi3_B 121 YPIDLYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTT----------PAKLR-NPCTS 189 (454)
T ss_dssp CCEEEEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCS----------TTTTT-CCSCS
T ss_pred CceeEEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCC----------hHHhc-CCCcC
Confidence 344 89999999996 4455544 445555556667899999999553 21010000 00000 00000
Q ss_pred ccccc-ccc-ccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHH--HhhccccCCCcccc
Q 012724 195 LEDVM-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYGNTFALA 270 (457)
Q Consensus 195 l~~~~-p~~-~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~~~~~~~g 270 (457)
...-. |+. ....++.+....+.+.++.+.-.. + .| .+...|-+-+++|. .-+. ... .-
T Consensus 190 ~~~c~~~f~fr~~l~LT~d~~~F~~~V~~~~isG--n--------~D---~PEgg~DAl~Qaavc~~~ig-WR~----a~ 251 (454)
T 3vi3_B 190 EQNCTTPFSYKNVLSLTNKGEVFNELVGKQRISG--N--------LD---SPEGGFDAIMQVAVCGSLIG-WRN----VT 251 (454)
T ss_dssp SSCCCCCCSEEEEEEEESCHHHHHHHHTTCCCCC--C--------SS---SSBCHHHHHHHHHHCHHHHT-CCS----SE
T ss_pred ccCCCCCcceeeeeecCCCHHHHHHHHhhccccC--C--------Cc---CCchhHHHHHHHhccccccC-Ccc----ce
Confidence 00101 111 113466666666777777654321 1 11 13455656666664 1221 111 24
Q ss_pred EEEEEecCCC--CCCCCccccccccCccCCCCccccccCCCc---chHHHHHHHHHHHHcceEEEEeeecCCccCc
Q 012724 271 RVFAFLSGPP--DHGAGQLDTRRYGEQYASKGEDADRALLPE---QTPFYKDLAAVAVQAGVCVDIFAITNEYTDL 341 (457)
Q Consensus 271 kIi~f~~g~p--t~GpG~l~~~~~~~~~~~~~~~~~~~~~~~---~~~fY~~la~~~~~~~isvdlf~~~~~~~~l 341 (457)
|+++|++-.+ ..|-|++..--.++....|-.+ ..|... .-.-..+|++.+.+++|-+ ||+.+....++
T Consensus 252 rllV~~TDa~fH~agDgkL~GIv~PNDg~CHL~~--~~Yt~s~~~DYPSv~ql~~~l~e~nI~~-IFAVt~~~~~~ 324 (454)
T 3vi3_B 252 RLLVFSTDAGFHFAGDGKLGGIVLPNDGQCHLEN--NMYTMSHYYDYPSIAHLVQKLSENNIQT-IFAVTEEFQPV 324 (454)
T ss_dssp EEEEEEESSCBCCTTTTGGGTCCSCCCCCCCEET--TEECCTTTSCCCCHHHHHHHHHHTTEEE-EEEEEGGGHHH
T ss_pred EEEEEECCCCcCcCCCccccceecCCCCccEeCC--CcccccccCCCCCHHHHHHHHHhcCCcE-EEEEcCccchH
Confidence 8888887655 3477776433222222222111 111110 0112467888999998765 78777665443
No 42
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=89.90 E-value=18 Score=36.67 Aligned_cols=229 Identities=21% Similarity=0.214 Sum_probs=108.8
Q ss_pred EEEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEEecceeEEEEccCCCcceeeeeeCCCCCcccccccccc
Q 012724 123 VYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHKIGLYDVQGAIPVVKNVFIPSDTEDTLSLELEDV 198 (457)
Q Consensus 123 ~~vFvID~s~~~-~~l~~~~---~~l~~~l~~l~~~~~vglItf~~~V~~y~l~~~~~~~~~v~~~~~~~~~v~~dl~~~ 198 (457)
=.+|++|+|.++ ..++.++ ..|...|..+..+.||||..|-+..-+ ..... ....+.++
T Consensus 134 DLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~-P~~~~----------------~p~~l~~P 196 (503)
T 3v4v_B 134 DLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVL-PFVST----------------VPSKLRHP 196 (503)
T ss_dssp EEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSST-TTSCC----------------CHHHHHCC
T ss_pred eEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccC-CcccC----------------CHHHhcCC
Confidence 489999999997 4455555 445555566667899999999553210 00000 00111111
Q ss_pred --------c-ccc-ccccchHhHHHHHHHHHHhcCCCCCcccccccccCCCCcccCCcchHHHHHHHH--HhhccccCCC
Q 012724 199 --------M-PLS-QFLAPVETFKENITSALETLRPTTSWERTAGAAQGLDGVLMGGRGFGLAMESLF--NYLGSEYGNT 266 (457)
Q Consensus 199 --------~-p~~-~~l~~~~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~G~Al~~a~--~lL~~~~~~~ 266 (457)
. |+. .-..++.+....+.+.+....-.. + .| .+...|.+-+++|+ +-+. ...
T Consensus 197 C~~~~~~c~p~f~fr~~l~LT~d~~~F~~~V~~~~iSG--n--------lD---~PEggfDAlmQaavC~~~Ig-WR~-- 260 (503)
T 3v4v_B 197 CPTRLERCQSPFSFHHVLSLTGDAQAFEREVGRQSVSG--N--------LD---SPEGGFDAILQAALCQEQIG-WRN-- 260 (503)
T ss_dssp SSCSSSCCCCCCSEEEEEEEESCSHHHHHHHTTCCCCC--C--------SS---SSBCHHHHHHHHHHCHHHHT-CCS--
T ss_pred CcCCCCCCCCCcceEEEEEecCCHHHHHHHHhhcCccC--C--------CC---CCchHHHHHHHHhhcccccC-CCc--
Confidence 0 110 112355555555666666543321 1 11 14455666666664 2222 111
Q ss_pred ccccEEEEEecCCCC--CCCCccccccccCccCCCCccccccCCCcc----hHHHHHHHHHHHHcceEEEEeeecCCccC
Q 012724 267 FALARVFAFLSGPPD--HGAGQLDTRRYGEQYASKGEDADRALLPEQ----TPFYKDLAAVAVQAGVCVDIFAITNEYTD 340 (457)
Q Consensus 267 ~~~gkIi~f~~g~pt--~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~----~~fY~~la~~~~~~~isvdlf~~~~~~~~ 340 (457)
..|+++|++-.+- .|-|++...-..+..+.|-.. . .++..+ -.-..+|.+.+.+++|.+ ||+......+
T Consensus 261 --a~rllV~~TDA~fH~agDgkLaGIv~pNDg~CHL~~-~-~~Yt~s~~~DYPSv~ql~~kL~ennI~~-IFAVt~~~~~ 335 (503)
T 3v4v_B 261 --VSRLLVFTSDDTFHTAGDGKLGGIFMPSDGHCHLDS-N-GLYSRSTEFDYPSVGQVAQALSAANIQP-IFAVTSAALP 335 (503)
T ss_dssp --SEEEEEEEESSCBCCTTGGGTTTCCSCCCSSCCBCT-T-SBBGGGGGSCCCCHHHHHHHHHHHTEEE-EEEECSSSHH
T ss_pred --ceEEEEEECCCCcCcCCCccccceecCCCCCeEECC-C-CccccccccCCCCHHHHHHHHHhcCCeE-EEEEcccchh
Confidence 2589888875553 366665432111111111110 0 011111 111357788888888843 7887776554
Q ss_pred ccccccccccC-ccEEEEeCCCCCCc---HHHHHHHHhccCcceeeEEEEEc-CCCeeEeE
Q 012724 341 LASLKFLSIES-GGSLFLYSSTDDST---LPQDIYRMLSRPYAFNCIMRLRT-SSEFKPGH 396 (457)
Q Consensus 341 l~~l~~l~~~T-GG~v~~~~~~~~~~---l~~dl~~~l~~~~~~~~~lrvR~-S~gl~i~~ 396 (457)
+. ..|+..- |+.+-.... |.+. |..+-+..|.++ +.|+... ++|++|+-
T Consensus 336 ~Y--~~L~~~ip~s~vg~Ls~-dSsNiv~LI~~aY~~i~S~----V~l~~~~~p~~l~v~y 389 (503)
T 3v4v_B 336 VY--QELSKLIPKSAVGELSE-DSSNVVQLIMDAYNSLSST----VTLEHSSLPPGVHISY 389 (503)
T ss_dssp HH--HHHHTTSTTCEEEECCT-TSCTHHHHHHHHHHHHHTC----EEEECCCCCTTEEEEB
T ss_pred HH--HHHHHhCCCceeeEccc-cchhHHHHHHHHHHHhheE----EEEecCCCCCceEEEE
Confidence 33 3343333 333333332 3322 444444444433 4444332 45676653
No 43
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=87.42 E-value=1.8 Score=46.08 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=32.9
Q ss_pred CcEEEEEEECCCCh-hHHHHHH---HHHHHHHHhCCCCcEEEEEEecce
Q 012724 121 RPVYVAAVDLSSSE-EFLELTR---SALQAALEAVPSGALFGLATFSHK 165 (457)
Q Consensus 121 ~p~~vFvID~s~~~-~~l~~~~---~~l~~~l~~l~~~~~vglItf~~~ 165 (457)
|-=.+|++|+|.++ ..++.|+ +.|...|..+.++.||||..|-+.
T Consensus 104 pvDly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk 152 (687)
T 3k6s_B 104 PIDLYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDK 152 (687)
T ss_dssp CCEEEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCC
T ss_pred ceeEEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeecc
Confidence 33489999999997 3444444 445556667778999999999664
No 44
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=84.17 E-value=1.3 Score=39.88 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=31.5
Q ss_pred EEEEEEECCCCh-hHHHHHHHHHHH---HHHhCCCCcEEEEEEecce
Q 012724 123 VYVAAVDLSSSE-EFLELTRSALQA---ALEAVPSGALFGLATFSHK 165 (457)
Q Consensus 123 ~~vFvID~s~~~-~~l~~~~~~l~~---~l~~l~~~~~vglItf~~~ 165 (457)
=.+|++|+|.++ ..++.+++.+.. .|+.+.++.|+||..|-+.
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk 51 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM 51 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC
Confidence 389999999986 455666655554 4455667899999999554
No 45
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=82.84 E-value=0.28 Score=34.22 Aligned_cols=27 Identities=22% Similarity=0.629 Sum_probs=16.9
Q ss_pred CCCcCcceEEecCceEeCceEEEccCCCC
Q 012724 51 PRCENCYAYFNTYCELEQWAWTCSLCGSL 79 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~~~~~~w~C~~C~~~ 79 (457)
--|.||++++.. +-..-.|+||+|.+.
T Consensus 34 r~CaRCGg~v~l--r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 34 KFCARCGGRVSL--RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp EECTTSEEEEES--STTCEEEEEHHHHHH
T ss_pred eeecccCCEeee--cCCeEEEEehhhhhc
Confidence 346777776643 111248999999653
No 46
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=81.76 E-value=2.9 Score=38.38 Aligned_cols=62 Identities=15% Similarity=0.246 Sum_probs=47.7
Q ss_pred cEEEEEecCCCCCCCCccccccccCccCCCCccccccCCCcchHHHHHHHHHHHHcceEEEEeeecC-C---ccCccccc
Q 012724 270 ARVFAFLSGPPDHGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAITN-E---YTDLASLK 345 (457)
Q Consensus 270 gkIi~f~~g~pt~GpG~l~~~~~~~~~~~~~~~~~~~~~~~~~~fY~~la~~~~~~~isvdlf~~~~-~---~~~l~~l~ 345 (457)
-.||++++|.-|.|.. + .+.|+.+.+.||.|..+.+.. + ..|..+|.
T Consensus 11 k~iillTDG~~~~g~~---p--------------------------~~aa~~a~~~gi~v~tIGig~~~~~~~~~~~~L~ 61 (242)
T 3rag_A 11 RQILVITDGCSNIGPD---P--------------------------VEAARRAHRHGIVVNVIGIVGRGDAGEQGYQEAH 61 (242)
T ss_dssp EEEEEEESSCCCSSSC---H--------------------------HHHHHHHHHTTCEEEEEEECCSSSCTTCCCHHHH
T ss_pred cEEEEEccCCCCCCCC---H--------------------------HHHHHHHHHCCCEEEEEEecCCccccchhHHHHH
Confidence 4688888998777631 1 257888999999999998843 2 34568899
Q ss_pred cccccCccEEEEeCC
Q 012724 346 FLSIESGGSLFLYSS 360 (457)
Q Consensus 346 ~l~~~TGG~v~~~~~ 360 (457)
.++..|||..|....
T Consensus 62 ~IA~~tGG~yf~a~~ 76 (242)
T 3rag_A 62 SIADAGGGMCRIVQP 76 (242)
T ss_dssp HHHHHTTSCEEEECG
T ss_pred HHHHhcCCeEEEeeH
Confidence 999999999888743
No 47
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=79.33 E-value=0.33 Score=35.72 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=15.3
Q ss_pred ceEEEccCCCCCCCChh
Q 012724 69 WAWTCSLCGSLNGLSSQ 85 (457)
Q Consensus 69 ~~w~C~~C~~~N~v~~~ 85 (457)
-.|+|++|...|.++.+
T Consensus 16 ~tWVCpICsfsN~v~s~ 32 (76)
T 2j9u_B 16 STWVCPICMVSNETQGE 32 (76)
T ss_dssp EEEECTTTCCEEEESSC
T ss_pred cceECccccccCcCccc
Confidence 58999999999999876
No 48
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=60.32 E-value=2 Score=33.94 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=24.4
Q ss_pred CCCCCcCcceEEecCceEeCceEEEccCCCCCCCChh
Q 012724 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLSSQ 85 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N~v~~~ 85 (457)
.|++|.+|+-- |..-....-+|+.|+..|..++.
T Consensus 66 ~p~~C~~CG~~---F~~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 66 KPAQCRKCGFV---FKAEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp CCCBBTTTCCB---CCCCSSCCSSCSSSCCCCBCCCC
T ss_pred ECcChhhCcCe---ecccCCCCCCCcCCCCCccCCcc
Confidence 57899999964 32111355799999999977654
No 49
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=60.02 E-value=5.3 Score=30.17 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCCCcCcceEEecCceEeCceEEEccCCCCCC
Q 012724 50 LPRCENCYAYFNTYCELEQWAWTCSLCGSLNG 81 (457)
Q Consensus 50 p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N~ 81 (457)
...|..|++-. .-+..-+.|.|.-|++...
T Consensus 27 ~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGEDR--VDRQGTGIWQCSYCDYKFT 56 (83)
T ss_dssp CEECSSSCCEE--EEEEETTEEEETTTCCEEE
T ss_pred cCcCCCCCCcc--eeccCCCeEECCCCCCEec
Confidence 35799999832 1122247999999998654
No 50
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=57.70 E-value=1.9 Score=31.56 Aligned_cols=31 Identities=23% Similarity=0.586 Sum_probs=20.6
Q ss_pred CCCCCcCcceEEecCceEeCceEEEccCCCCCCCC
Q 012724 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N~v~ 83 (457)
.++||. |+.+. +.+-..+.-.|+ ||..-.+.
T Consensus 3 ~vv~C~-C~~~~--~~~~~~kT~~C~-CG~~~~~~ 33 (71)
T 1gh9_A 3 IIFRCD-CGRAL--YSREGAKTRKCV-CGRTVNVK 33 (71)
T ss_dssp EEEEET-TSCCE--EEETTCSEEEET-TTEEEECC
T ss_pred EEEECC-CCCEE--EEcCCCcEEECC-CCCeeeec
Confidence 358999 99973 222223577898 99876654
No 51
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=57.27 E-value=2.2 Score=32.52 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=20.4
Q ss_pred CCCCCcCcceEEecC-----------ceEeC--ceEEEccCCCC
Q 012724 49 MLPRCENCYAYFNTY-----------CELEQ--WAWTCSLCGSL 79 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~-----------~~~~~--~~w~C~~C~~~ 79 (457)
..-+|..|+-...+- ..|+. ..|+|+.|+..
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCCC
Confidence 346899998655553 23332 57999999863
No 52
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=56.83 E-value=1.9 Score=28.67 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=15.9
Q ss_pred CCCcCcceEEecC----ceEeC--ceEEEccCCCC
Q 012724 51 PRCENCYAYFNTY----CELEQ--WAWTCSLCGSL 79 (457)
Q Consensus 51 ~RC~~C~aYiNp~----~~~~~--~~w~C~~C~~~ 79 (457)
-+|..|+-...|- ..|+. ..|+|+.|+..
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~~ 39 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGVS 39 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCCc
Confidence 3677776444432 22332 45778888753
No 53
>2avu_E Flagellar transcriptional activator FLHC; C4-type zinc finger, transcription activator; 3.00A {Escherichia coli} SCOP: e.64.1.1
Probab=56.32 E-value=3 Score=36.76 Aligned_cols=28 Identities=25% Similarity=0.641 Sum_probs=19.2
Q ss_pred CCCCCcCcce-EEecCceEeCceEEEccCC
Q 012724 49 MLPRCENCYA-YFNTYCELEQWAWTCSLCG 77 (457)
Q Consensus 49 ~p~RC~~C~a-YiNp~~~~~~~~w~C~~C~ 77 (457)
...+|.+|++ |+...-. ....++|+||+
T Consensus 133 ~l~~C~~Cgg~fv~~~~~-~~~~f~Cp~C~ 161 (192)
T 2avu_E 133 QLSSCNCCGGNFITHAHQ-PVGSFACSLCQ 161 (192)
T ss_dssp EEEECTTTCCEEEEESSC-CSSCCCCTTC-
T ss_pred eeCcCCCCCCCeeCccCC-CCCCCcCCCCC
Confidence 4568999998 5544332 23689999999
No 54
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=56.32 E-value=3.9 Score=29.46 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=26.4
Q ss_pred CCCCCCCcCcceEEecCceEeC-ceEEEccCCC
Q 012724 47 GHMLPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (457)
Q Consensus 47 ~~~p~RC~~C~aYiNp~~~~~~-~~w~C~~C~~ 78 (457)
...+..|.+|++--.|..+-.. +...||-||.
T Consensus 6 ~~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl 38 (66)
T 4gat_A 6 QNGPTTCTNCFTQTTPLWRRNPEGQPLCNACGL 38 (66)
T ss_dssp SSSSCCCTTTCCCCCSSCEEETTTEEECHHHHH
T ss_pred CCCCCCCCCCCCCCCCcCCcCCCCCCccHHHHH
Confidence 3467899999999999888764 5699999984
No 55
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=50.98 E-value=3.2 Score=28.38 Aligned_cols=10 Identities=50% Similarity=1.458 Sum_probs=6.3
Q ss_pred ceEEEccCCC
Q 012724 69 WAWTCSLCGS 78 (457)
Q Consensus 69 ~~w~C~~C~~ 78 (457)
..|+|+.|+.
T Consensus 34 ~dw~CP~Cg~ 43 (52)
T 1yk4_A 34 DDWVCPLCGA 43 (52)
T ss_dssp TTCBCTTTCC
T ss_pred CCCcCCCCCC
Confidence 4566666665
No 56
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.59 E-value=4 Score=30.18 Aligned_cols=29 Identities=21% Similarity=0.780 Sum_probs=19.1
Q ss_pred CCCcCcceEEecCceEeC--ceEEEccCCCC
Q 012724 51 PRCENCYAYFNTYCELEQ--WAWTCSLCGSL 79 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~~~~--~~w~C~~C~~~ 79 (457)
..|..|.--+.-.|++.. ..|+|.+|...
T Consensus 43 ~~C~~Ck~rVC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 43 NTCRGCNHLVCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp SEETTTTEECCTTSEEECSTTCEEEHHHHSS
T ss_pred CcCcccChhhcccccccCCCCCEEEeeCchh
Confidence 445666666666666553 68999999654
No 57
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=48.52 E-value=3.4 Score=28.48 Aligned_cols=11 Identities=45% Similarity=1.129 Sum_probs=7.2
Q ss_pred ceEEEccCCCC
Q 012724 69 WAWTCSLCGSL 79 (457)
Q Consensus 69 ~~w~C~~C~~~ 79 (457)
..|+|+.|+..
T Consensus 35 ~dw~CP~Cg~~ 45 (54)
T 4rxn_A 35 DDWVCPLCGVG 45 (54)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCcCCCCc
Confidence 46777777753
No 58
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=45.33 E-value=12 Score=30.45 Aligned_cols=30 Identities=23% Similarity=0.503 Sum_probs=23.5
Q ss_pred CCCCCCcCcceEEecCceEeCceEEEccCCCCC
Q 012724 48 HMLPRCENCYAYFNTYCELEQWAWTCSLCGSLN 80 (457)
Q Consensus 48 ~~p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N 80 (457)
...|.|.+|.+ .|.--++..|+|+-|++.-
T Consensus 25 ~~lP~CP~C~s---eytYeDg~l~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNS---EYTYEDGALLVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCC---CCCEECSSSEEETTTTEEE
T ss_pred ccCCCCCCCCC---cceEecCCeEECCcccccc
Confidence 35689999986 4555667899999999854
No 59
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=43.95 E-value=24 Score=23.35 Aligned_cols=28 Identities=18% Similarity=0.388 Sum_probs=19.9
Q ss_pred CCCCcCcceEEecCceEeC--ceEEEccCCCCC
Q 012724 50 LPRCENCYAYFNTYCELEQ--WAWTCSLCGSLN 80 (457)
Q Consensus 50 p~RC~~C~aYiNp~~~~~~--~~w~C~~C~~~N 80 (457)
...|..|++ .-..++. +.++|.-||..-
T Consensus 5 ~~~CP~C~~---~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 5 QKVCPACES---AELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp CCSCTTTSC---CCEEEETTTTEEEESSSCCBC
T ss_pred cEeCcCCCC---cceEEcCCCCeEECcccCCcc
Confidence 467999988 1123453 689999999843
No 60
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.67 E-value=5.1 Score=27.72 Aligned_cols=10 Identities=40% Similarity=1.175 Sum_probs=6.2
Q ss_pred ceEEEccCCC
Q 012724 69 WAWTCSLCGS 78 (457)
Q Consensus 69 ~~w~C~~C~~ 78 (457)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cga 44 (55)
T 2v3b_B 35 ADWVCPDCGV 44 (55)
T ss_dssp TTCCCTTTCC
T ss_pred CCCcCCCCCC
Confidence 4566666665
No 61
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=40.73 E-value=5.5 Score=29.89 Aligned_cols=29 Identities=28% Similarity=0.701 Sum_probs=17.2
Q ss_pred CCCCcCcceEEecCc-----------eEeC--ceEEEccCCC
Q 012724 50 LPRCENCYAYFNTYC-----------ELEQ--WAWTCSLCGS 78 (457)
Q Consensus 50 p~RC~~C~aYiNp~~-----------~~~~--~~w~C~~C~~ 78 (457)
.-+|..|+=...|-. .|+. ..|+|+.|+.
T Consensus 27 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 27 LFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp EEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred eEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 457887875555422 2222 4688888876
No 62
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=40.29 E-value=8.8 Score=34.16 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=18.3
Q ss_pred CCCCcCcceEEecCceEeCceEEEccCCCCC
Q 012724 50 LPRCENCYAYFNTYCELEQWAWTCSLCGSLN 80 (457)
Q Consensus 50 p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N 80 (457)
.-+|..|+-.... ..-|+|++|++.-
T Consensus 171 ~~~C~~CG~i~~g-----~~p~~CP~C~~~k 196 (202)
T 1yuz_A 171 FHLCPICGYIHKG-----EDFEKCPICFRPK 196 (202)
T ss_dssp EEECSSSCCEEES-----SCCSBCTTTCCBG
T ss_pred EEEECCCCCEEcC-----cCCCCCCCCCCCh
Confidence 4589999855442 2349999999753
No 63
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=39.39 E-value=5 Score=27.42 Aligned_cols=10 Identities=40% Similarity=1.405 Sum_probs=5.5
Q ss_pred ceEEEccCCC
Q 012724 69 WAWTCSLCGS 78 (457)
Q Consensus 69 ~~w~C~~C~~ 78 (457)
..|+|+.|+.
T Consensus 35 ~dw~CP~Cg~ 44 (52)
T 1e8j_A 35 DDWACPVCGA 44 (52)
T ss_dssp TTCCCSSSCC
T ss_pred CCCcCCCCCC
Confidence 3455665554
No 64
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=39.34 E-value=7.3 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.555 Sum_probs=11.1
Q ss_pred ceEEEccCCCCCC
Q 012724 69 WAWTCSLCGSLNG 81 (457)
Q Consensus 69 ~~w~C~~C~~~N~ 81 (457)
+-|.|+.|+..|-
T Consensus 4 gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 4 EDWLCNKCCLNNF 16 (32)
T ss_dssp SEEECTTTCCEEE
T ss_pred CCCCcCcCcCCcC
Confidence 4699999999884
No 65
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=39.29 E-value=6.2 Score=31.81 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=24.7
Q ss_pred CCCCCcCcceEEecCceEeC-ceEEEccCCC
Q 012724 49 MLPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~~~~~~-~~w~C~~C~~ 78 (457)
.+..|.+|++---|..+-++ ..+.||-|+.
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl 34 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTGHYLCNACGL 34 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTSCEECHHHHH
T ss_pred CCCCCCCCCCccCCcceECCCCCCcCcchhh
Confidence 45789999999999988775 6799999985
No 66
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=38.79 E-value=6.4 Score=28.70 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=7.7
Q ss_pred ceEEEccCCCC
Q 012724 69 WAWTCSLCGSL 79 (457)
Q Consensus 69 ~~w~C~~C~~~ 79 (457)
..|+|+.|+..
T Consensus 39 ddw~CP~Cga~ 49 (70)
T 1dx8_A 39 DSFMCPACRSP 49 (70)
T ss_dssp TTCBCTTTCCB
T ss_pred CCCcCCCCCCC
Confidence 46778888763
No 67
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=38.59 E-value=8.5 Score=32.64 Aligned_cols=32 Identities=19% Similarity=0.560 Sum_probs=23.7
Q ss_pred CCCCcCcceEEecCceEe---CceEEEccCCCCCC
Q 012724 50 LPRCENCYAYFNTYCELE---QWAWTCSLCGSLNG 81 (457)
Q Consensus 50 p~RC~~C~aYiNp~~~~~---~~~w~C~~C~~~N~ 81 (457)
-..|..|+-.+.--|... ...|+|.+|...-.
T Consensus 85 g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~re 119 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLARV 119 (153)
T ss_dssp CEECTTTCCEECGGGEECCSSSSSCEEHHHHHHHH
T ss_pred CCcCCCCCchhhcccccccCCCCcEeeHHHHHHHH
Confidence 456777777777777644 36899999997654
No 68
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=38.48 E-value=5.2 Score=26.55 Aligned_cols=30 Identities=23% Similarity=0.474 Sum_probs=23.3
Q ss_pred CCCCCcCcceEEecCceEeC-ceEEEccCCC
Q 012724 49 MLPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~~~~~~-~~w~C~~C~~ 78 (457)
....|.+|++--.|..+-.. ....||-||.
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 33 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGL 33 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHH
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHH
Confidence 45789999998888777653 4588999985
No 69
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=37.93 E-value=7.2 Score=25.48 Aligned_cols=29 Identities=21% Similarity=0.475 Sum_probs=21.7
Q ss_pred CCCCcCcceEEecCceEeC-ceEEEccCCC
Q 012724 50 LPRCENCYAYFNTYCELEQ-WAWTCSLCGS 78 (457)
Q Consensus 50 p~RC~~C~aYiNp~~~~~~-~~w~C~~C~~ 78 (457)
|..|.+|++--.|..+-.. +.-.||-||.
T Consensus 1 p~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl 30 (43)
T 2vut_I 1 PTTCTNCFTQTTPLWRRNPEGQPLCNACGL 30 (43)
T ss_dssp -CCCSSSCCCCCSCCEECTTSCEECHHHHH
T ss_pred CCcCCccCCCCCCccccCCCCCcccHHHHH
Confidence 4679999998877777653 4588999984
No 70
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.11 E-value=18 Score=24.38 Aligned_cols=25 Identities=24% Similarity=0.678 Sum_probs=18.1
Q ss_pred CCCcCcce--EEecCceEeCceEEEccCCCC
Q 012724 51 PRCENCYA--YFNTYCELEQWAWTCSLCGSL 79 (457)
Q Consensus 51 ~RC~~C~a--YiNp~~~~~~~~w~C~~C~~~ 79 (457)
-.|.+|++ ++- -...+|.|.=||..
T Consensus 20 k~CP~CG~~~fm~----~~~~R~~C~kCG~t 46 (50)
T 3j20_Y 20 KFCPRCGPGVFMA----DHGDRWACGKCGYT 46 (50)
T ss_dssp EECSSSCSSCEEE----ECSSEEECSSSCCE
T ss_pred ccCCCCCCceEEe----cCCCeEECCCCCCE
Confidence 45999998 432 23579999999863
No 71
>1b3t_A Protein (nuclear protein EBNA1); protein-DNA complex, DNA-binding, activator, origin-binding protein, protein/DNA complex; HET: DNA; 2.20A {Human herpesvirus 4} SCOP: d.58.8.1 PDB: 1vhi_A
Probab=36.77 E-value=42 Score=27.09 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHhCCC---CcEEEEEEecceeE
Q 012724 135 EFLELTRSALQAALEAVPS---GALFGLATFSHKIG 167 (457)
Q Consensus 135 ~~l~~~~~~l~~~l~~l~~---~~~vglItf~~~V~ 167 (457)
-+.+.+++||+.-+..-|. +++|-+++||+.|-
T Consensus 110 ~fAe~~kDAi~Dyi~t~P~PT~~~~VtvcsFdd~V~ 145 (147)
T 1b3t_A 110 IFAEVLKDAIKDLVMTKPAPTCNIRVTVCSFDDGVD 145 (147)
T ss_dssp HHHHHHHHHHHHHHHTSCTTGGGEEEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCCCCcceEEEEEeCCCCcc
Confidence 4457788888887776553 67999999998763
No 72
>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23
Probab=34.08 E-value=18 Score=33.89 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEecc
Q 012724 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (457)
Q Consensus 135 ~~l~~~~~~l~~~l~~l~~~~~vglItf~~ 164 (457)
.+|+.+.++|.++++.|.++-|+++|||-+
T Consensus 207 ~EL~~L~~~L~~a~~~L~~gGrl~visfHS 236 (285)
T 1wg8_A 207 DELNALKEFLEQAAEVLAPGGRLVVIAFHS 236 (285)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 678889999999999999999999999854
No 73
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=33.53 E-value=11 Score=30.32 Aligned_cols=28 Identities=25% Similarity=0.595 Sum_probs=18.6
Q ss_pred CCCCcCcceEEecCceEeCceE-EEccCCCCCC
Q 012724 50 LPRCENCYAYFNTYCELEQWAW-TCSLCGSLNG 81 (457)
Q Consensus 50 p~RC~~C~aYiNp~~~~~~~~w-~C~~C~~~N~ 81 (457)
-.||..|+..... +.... .||-||+.+.
T Consensus 73 ~~~C~~CG~~~e~----~~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 73 ELECKDCSHVFKP----NALDYGVCEKCHSKNV 101 (119)
T ss_dssp EEECSSSSCEECS----CCSTTCCCSSSSSCCC
T ss_pred eEEcCCCCCEEeC----CCCCCCcCccccCCCc
Confidence 3588888865443 33456 7888888763
No 74
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=32.14 E-value=14 Score=20.56 Aligned_cols=25 Identities=32% Similarity=0.903 Sum_probs=20.2
Q ss_pred CCcCcceEEecCceEe-CceEEEccC
Q 012724 52 RCENCYAYFNTYCELE-QWAWTCSLC 76 (457)
Q Consensus 52 RC~~C~aYiNp~~~~~-~~~w~C~~C 76 (457)
.|-.|--+=|-||--. ++.|-|.=|
T Consensus 2 ~cvscv~fgngfcgdncgnswacsgc 27 (27)
T 2hgo_A 2 TCVSCVNFGNGFCGDNCGNSWACSGC 27 (27)
T ss_dssp CCCSCEEETTTEEECSSSCEEECSCC
T ss_pred cceEeEeecCccccCCcCCcccccCC
Confidence 4788888889998765 589999866
No 75
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=31.60 E-value=17 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.521 Sum_probs=20.8
Q ss_pred CCCCCCcCcceEEecCceEeCceEEEccCCCCCCCC
Q 012724 48 HMLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (457)
Q Consensus 48 ~~p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N~v~ 83 (457)
..+.+|.+|+.|== +-+|+.||..+..+
T Consensus 4 s~mr~C~~CgvYTL--------k~~CP~CG~~T~~~ 31 (60)
T 2apo_B 4 MRMKKCPKCGLYTL--------KEICPKCGEKTVIP 31 (60)
T ss_dssp CCCEECTTTCCEES--------SSBCSSSCSBCBCC
T ss_pred hhceeCCCCCCEec--------cccCcCCCCcCCCC
Confidence 35678999999852 34699999877654
No 76
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}
Probab=31.48 E-value=21 Score=34.49 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEecc
Q 012724 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (457)
Q Consensus 135 ~~l~~~~~~l~~~l~~l~~~~~vglItf~~ 164 (457)
.+|+.+.++|.++++.|.++-|+++|||-+
T Consensus 248 ~EL~~L~~~L~~a~~~L~~gGRl~VISFHS 277 (347)
T 3tka_A 248 SELEEIEQALKSSLNVLAPGGRLSIISFHS 277 (347)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEecCc
Confidence 578889999999999999999999999864
No 77
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=30.91 E-value=11 Score=22.89 Aligned_cols=13 Identities=31% Similarity=0.897 Sum_probs=11.1
Q ss_pred ceEEEccCCCCCC
Q 012724 69 WAWTCSLCGSLNG 81 (457)
Q Consensus 69 ~~w~C~~C~~~N~ 81 (457)
.-|+|+-|+..|-
T Consensus 5 gDW~C~~C~~~Nf 17 (33)
T 2k1p_A 5 NDWQCKTCSNVNW 17 (33)
T ss_dssp SSCBCSSSCCBCC
T ss_pred CCcccCCCCCccc
Confidence 4699999999994
No 78
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=30.83 E-value=10 Score=28.70 Aligned_cols=16 Identities=19% Similarity=0.565 Sum_probs=13.4
Q ss_pred CceEEEccCCCCCCCC
Q 012724 68 QWAWTCSLCGSLNGLS 83 (457)
Q Consensus 68 ~~~w~C~~C~~~N~v~ 83 (457)
...|.|+||++.+.+.
T Consensus 21 ~t~F~CPfCnh~~sV~ 36 (85)
T 1wii_A 21 ETQFTCPFCNHEKSCD 36 (85)
T ss_dssp SSCCCCTTTCCSSCEE
T ss_pred CCeEcCCCCCCCCeEE
Confidence 3679999999999764
No 79
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.56 E-value=22 Score=29.35 Aligned_cols=31 Identities=29% Similarity=0.683 Sum_probs=23.4
Q ss_pred CCCcCcceEEecCceEeC------ceEEEccCCCCCC
Q 012724 51 PRCENCYAYFNTYCELEQ------WAWTCSLCGSLNG 81 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~~~~------~~w~C~~C~~~N~ 81 (457)
..|..|+-.+..-|.... ..|+|++|...-.
T Consensus 73 ~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~re 109 (134)
T 1zbd_B 73 VVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQRE 109 (134)
T ss_dssp EECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHHHH
T ss_pred CCCCCCCcccccccCCccCCCCCccceechhhHHHHH
Confidence 578888888877777631 4899999997644
No 80
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=30.52 E-value=11 Score=39.07 Aligned_cols=17 Identities=24% Similarity=0.688 Sum_probs=0.0
Q ss_pred ceEEEccCCCCCCCChh
Q 012724 69 WAWTCSLCGSLNGLSSQ 85 (457)
Q Consensus 69 ~~w~C~~C~~~N~v~~~ 85 (457)
..|+|.+|+..|++|..
T Consensus 116 ~tWvC~ICsfsN~~~~~ 132 (566)
T 1w7p_D 116 STWVCPICMVSNETQGE 132 (566)
T ss_dssp -----------------
T ss_pred cceeccccccCCCCCCC
Confidence 58999999999999865
No 81
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=27.84 E-value=18 Score=29.30 Aligned_cols=33 Identities=21% Similarity=0.466 Sum_probs=24.8
Q ss_pred CCCcCcceEEecCce----EeCc-----eEEEccCCCCCCCC
Q 012724 51 PRCENCYAYFNTYCE----LEQW-----AWTCSLCGSLNGLS 83 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~----~~~~-----~w~C~~C~~~N~v~ 83 (457)
.-|.+|++++=|-.. +..+ .+.|..||+....|
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~kR~p 107 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIMRYP 107 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEc
Confidence 369999999988643 2332 57899999988665
No 82
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=26.44 E-value=7.5 Score=28.40 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=23.4
Q ss_pred CCCCCCCcCcceEEecCceE--eCceEEEccCCC
Q 012724 47 GHMLPRCENCYAYFNTYCEL--EQWAWTCSLCGS 78 (457)
Q Consensus 47 ~~~p~RC~~C~aYiNp~~~~--~~~~w~C~~C~~ 78 (457)
+..+..|.+|++--.|..+- ....-.||-||.
T Consensus 5 ~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl 38 (71)
T 2kae_A 5 NKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFI 38 (71)
T ss_dssp ---CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHH
T ss_pred CCCCCcCCccCCCCCCccccCCCCCCccchHHHH
Confidence 34678999999999888876 334478999984
No 83
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.89 E-value=20 Score=24.26 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.7
Q ss_pred CCCCCcCcceEEecCceEeCceEEEccCCCCCCCC
Q 012724 49 MLPRCENCYAYFNTYCELEQWAWTCSLCGSLNGLS 83 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~~~~~~~~w~C~~C~~~N~v~ 83 (457)
....|.+|++- .-.+.|.|-=||+.|.-|
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~~~lr~ 41 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGYKRLRP 41 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSSCCCEE
T ss_pred CCccCCCCCCc------CCCCceecCCCCCccccc
Confidence 45678888885 123789999999986433
No 84
>3gj5_B Nuclear pore complex protein NUP153; G protein, GDP, RAN, zinc finger, acetylation, cytoplasm, GTP-binding, HOST-virus interaction; HET: GDP; 1.79A {Rattus norvegicus} SCOP: g.41.11.1
Probab=25.60 E-value=19 Score=22.21 Aligned_cols=17 Identities=24% Similarity=0.602 Sum_probs=13.2
Q ss_pred eCceEEEccCCCCCCCC
Q 012724 67 EQWAWTCSLCGSLNGLS 83 (457)
Q Consensus 67 ~~~~w~C~~C~~~N~v~ 83 (457)
+.+.|.|..|-..|...
T Consensus 4 ~~G~W~C~~C~v~N~~~ 20 (34)
T 3gj5_B 4 GSGSWDCEVCLVQNKAD 20 (34)
T ss_dssp --CCEECTTTCCEECSS
T ss_pred CCCceECCeeEeECccc
Confidence 45789999999999764
No 85
>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*
Probab=24.50 E-value=24 Score=33.31 Aligned_cols=30 Identities=20% Similarity=0.220 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCcEEEEEEecc
Q 012724 135 EFLELTRSALQAALEAVPSGALFGLATFSH 164 (457)
Q Consensus 135 ~~l~~~~~~l~~~l~~l~~~~~vglItf~~ 164 (457)
.+|+.+.++|..+++.|.++-|+++|||-+
T Consensus 219 ~el~~l~~~l~~~~~~l~~ggr~~visfhs 248 (301)
T 1m6y_A 219 RELENLKEFLKKAEDLLNPGGRIVVISFHS 248 (301)
T ss_dssp THHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred cCHHHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence 577888888888888898899999999854
No 86
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=24.09 E-value=35 Score=23.41 Aligned_cols=27 Identities=19% Similarity=0.452 Sum_probs=19.5
Q ss_pred CCCcCcceEEecCceEeCceEEEccCCCC
Q 012724 51 PRCENCYAYFNTYCELEQWAWTCSLCGSL 79 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~~~~~~w~C~~C~~~ 79 (457)
..|.+|++-+ |+.-...+|.|.=|+..
T Consensus 19 ~fCPkCG~~~--~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 19 RFCPRCGPGV--FLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CCCTTTTTTC--CCEECSSEEECTTTCCC
T ss_pred ccCcCCCCce--eEeccCCEEECCCCCCE
Confidence 4699999844 33333469999999875
No 87
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.08 E-value=16 Score=24.22 Aligned_cols=26 Identities=27% Similarity=0.662 Sum_probs=13.0
Q ss_pred CCCcCcceEEecCceEeC---ceEEEccCCCC
Q 012724 51 PRCENCYAYFNTYCELEQ---WAWTCSLCGSL 79 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~~~~---~~w~C~~C~~~ 79 (457)
-+|-+|+.-. ..-+- -.-+|+.||..
T Consensus 4 Y~C~rCg~~f---s~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 4 YRCGKCWKTF---TDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp -CCCCTTTTC---CCCCSCCCSSSCCTTTCCS
T ss_pred EEeeccCCCc---cHHHHhhCCCcccCccCcE
Confidence 4677776522 11111 35677777754
No 88
>2k0a_A PRE-mRNA-splicing factor RDS3; zinc finger, topological knot, mRNA processing, nucleus, spliceosome, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=22.61 E-value=17 Score=28.27 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=29.7
Q ss_pred CCCcCcceEEecCceEe-------C-ceEEEccCCCCCCCChhhhc
Q 012724 51 PRCENCYAYFNTYCELE-------Q-WAWTCSLCGSLNGLSSQAIA 88 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~~~-------~-~~w~C~~C~~~N~v~~~y~~ 88 (457)
-||.-|-+|+.|...+- + ..=+|-+||....+.+.|++
T Consensus 30 GkC~iCDs~Vrp~~~VrICdeCs~G~~~~rCIiCg~~~g~~dAYYC 75 (109)
T 2k0a_A 30 GKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYC 75 (109)
T ss_dssp TCCTTTCCCCCCCEECEEEHHHHTSSTTSBCTTTSSSBCCEECEEC
T ss_pred CcccccCCccCCcceEEECCcCCCCCcCCceEEcCCCCCcccceeh
Confidence 58999999999965542 1 46789999988888878875
No 89
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=21.98 E-value=40 Score=27.31 Aligned_cols=33 Identities=24% Similarity=0.496 Sum_probs=24.6
Q ss_pred CCCcCcceEEecCce----EeCc-----eEEEccCCCCCCCC
Q 012724 51 PRCENCYAYFNTYCE----LEQW-----AWTCSLCGSLNGLS 83 (457)
Q Consensus 51 ~RC~~C~aYiNp~~~----~~~~-----~w~C~~C~~~N~v~ 83 (457)
.-|.+|++++=|-.. +..+ .+.|..||+....|
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR~p 102 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMRYP 102 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEEEe
Confidence 369999999988643 2232 57899999887665
No 90
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=21.78 E-value=26 Score=20.71 Aligned_cols=15 Identities=27% Similarity=0.702 Sum_probs=11.7
Q ss_pred ceEEEccCCCCCCCC
Q 012724 69 WAWTCSLCGSLNGLS 83 (457)
Q Consensus 69 ~~w~C~~C~~~N~v~ 83 (457)
..|.|+.|-..|...
T Consensus 5 ~~W~C~~CTf~N~~~ 19 (31)
T 1nj3_A 5 AMWACQHCTFMNQPG 19 (31)
T ss_dssp CCEECSSSCCEECSS
T ss_pred ccccCCcccccCCCC
Confidence 479999998888643
No 91
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=20.80 E-value=35 Score=20.97 Aligned_cols=14 Identities=21% Similarity=0.534 Sum_probs=10.1
Q ss_pred eEEEccCCCCCCCC
Q 012724 70 AWTCSLCGSLNGLS 83 (457)
Q Consensus 70 ~w~C~~C~~~N~v~ 83 (457)
.++|++|...-.-+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 58999998654433
No 92
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.44 E-value=26 Score=24.56 Aligned_cols=37 Identities=22% Similarity=0.527 Sum_probs=24.5
Q ss_pred CCCCCCCcCcceEEecCceEe--------CceEEEccCCCCCCCC
Q 012724 47 GHMLPRCENCYAYFNTYCELE--------QWAWTCSLCGSLNGLS 83 (457)
Q Consensus 47 ~~~p~RC~~C~aYiNp~~~~~--------~~~w~C~~C~~~N~v~ 83 (457)
+..+..|..|+--..-...+. .+.|.|..|+....-.
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~ 58 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRP 58 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCH
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCH
Confidence 556789999986543322222 2569999999876543
No 93
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.33 E-value=45 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=22.7
Q ss_pred CCCCCCCcCcceEEecC--ceEeC-----ceEEEccCCCC
Q 012724 47 GHMLPRCENCYAYFNTY--CELEQ-----WAWTCSLCGSL 79 (457)
Q Consensus 47 ~~~p~RC~~C~aYiNp~--~~~~~-----~~w~C~~C~~~ 79 (457)
.....+|.+|+--|-+- ....+ ..++|..|+..
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~ 51 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEAT 51 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCB
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCC
Confidence 45678999999988542 33233 35799999864
No 94
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=20.07 E-value=27 Score=23.49 Aligned_cols=17 Identities=29% Similarity=0.734 Sum_probs=13.5
Q ss_pred ceEEEccCCCCCCCChh
Q 012724 69 WAWTCSLCGSLNGLSSQ 85 (457)
Q Consensus 69 ~~w~C~~C~~~N~v~~~ 85 (457)
..|+|.-|++.|.-...
T Consensus 10 D~WkC~~C~k~N~Pl~r 26 (53)
T 2cr8_A 10 DEWQCTECKKFNSPSKR 26 (53)
T ss_dssp CCEECSSSCCEECSSCC
T ss_pred ceeecccccccCCCccc
Confidence 68999999999965433
No 95
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=20.07 E-value=19 Score=23.62 Aligned_cols=34 Identities=18% Similarity=0.493 Sum_probs=19.5
Q ss_pred CCCCCcCcceEEecCceEe--------CceEEEccCCCCCCC
Q 012724 49 MLPRCENCYAYFNTYCELE--------QWAWTCSLCGSLNGL 82 (457)
Q Consensus 49 ~p~RC~~C~aYiNp~~~~~--------~~~w~C~~C~~~N~v 82 (457)
.|..|..|+.-..-...+. .+.|.|+.|+.....
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 4567888876433322221 256999999876543
Done!