BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012725
         (457 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4DIX|A Chain A, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
           Protein Scab1
 pdb|4DIX|B Chain B, Crystal Structure Of The Ig-Ph Domain Of Actin-Binding
           Protein Scab1
          Length = 230

 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 119/147 (80%)

Query: 271 NKRAEENKSCLYVFDGSEALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISGAS 330
           + ++EEN S +Y  DG+EALGS LR+RP S+ AP LSKC+IQWYR S DGS+KE+ISGA+
Sbjct: 4   SSKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGAT 63

Query: 331 KLAYAPEPLDVGRVLQADILSNGQKITVTSAGPIESAAGLGSYVETLLRKSSSEFNVVIS 390
           K  YAPEP DVGRVL ADI+ +G  +++++ G I+ AAGLGSYVE L+RK   +FNVV++
Sbjct: 64  KSVYAPEPFDVGRVLHADIIYDGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVT 123

Query: 391 QMNGQDYSSHSNHCFNVGKLRIKLCRG 417
           QM+G+D++S S H F+VGK+RIKLC+G
Sbjct: 124 QMSGEDHTSESIHLFHVGKMRIKLCKG 150


>pdb|4DJG|A Chain A, Crystal Structure Of The Coiled-Coil 1 Domain Of
           Actin-Binding Protein Scab1
 pdb|4DJG|B Chain B, Crystal Structure Of The Coiled-Coil 1 Domain Of
           Actin-Binding Protein Scab1
          Length = 52

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 40/50 (80%), Positives = 47/50 (94%)

Query: 103 SLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGE 152
           SLE HVLLKKLRDALE+LRGR+AGR K+DVE+AI++VEALAV+LTQ EGE
Sbjct: 3   SLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52


>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
           Reductase (Nadh) From Aquifex Aeolicus Vf5
 pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
           Reductase (Nadh) From Aquifex Aeolicus Vf5
 pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
           Reductase (Nadh) From Aquifex Aeolicus Vf5
 pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
           Reductase (Nadh) From Aquifex Aeolicus Vf5
          Length = 285

 Score = 31.2 bits (69), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 343 RVLQADILSNGQKITVTSAGPIESAAGLGSYVETLLRKSSSEFNVVISQMNGQDYSSHSN 402
           R L  DI  +G +I   SAGP+++ A        LL + +++ N     +  +D      
Sbjct: 186 RYLAYDIAKHGHRINAISAGPVKTLAAYSITGFHLLMEHTTKVNPFGKPITIED------ 239

Query: 403 HCFNVGKLRIKLCRGWITNLEKYITH 428
               VG   + LC  W   +   + H
Sbjct: 240 ----VGDTAVFLCSDWARAITGEVVH 261


>pdb|1STZ|A Chain A, Crystal Structure Of A Hypothetical Protein At 2.2 A
           Resolution
 pdb|1STZ|B Chain B, Crystal Structure Of A Hypothetical Protein At 2.2 A
           Resolution
 pdb|1STZ|C Chain C, Crystal Structure Of A Hypothetical Protein At 2.2 A
           Resolution
          Length = 338

 Score = 29.3 bits (64), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 359 TSAGPIESAAGLGSYVETLLR--KSSSEFNVVISQMNGQDYSSHSNHCFNVGKLRIKLCR 416
           TSAG I +  GL  Y E +L+  K +SE ++ +        +      F  G L  +L  
Sbjct: 73  TSAGRIPTDKGLRFYYEEMLKISKETSEADLAVETFKSMPLADPEKVLFLAGNLLARLTE 132

Query: 417 GWI 419
           G++
Sbjct: 133 GYV 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.312    0.128    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,650,744
Number of Sequences: 62578
Number of extensions: 439546
Number of successful extensions: 1262
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 49
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)