BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012725
(457 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00105|VG22_ICHVA Uncharacterized protein ORF22 OS=Ictalurid herpesvirus 1 (strain
Auburn) GN=ORF22 PE=4 SV=1
Length = 1403
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 16/105 (15%)
Query: 66 LSEQHKRLSVRDLASKFDKNLTAAAKLADEAKLRDVA-------SLEGHVLLKKLRDALE 118
L + +KRL R+ ++ +K++++ +L ++ A + E H +LK+ DAL
Sbjct: 664 LHDTNKRLLTRN--TRLEKSISSKEELISSLTIKGNALSSQLADAREQHAVLKREYDALR 721
Query: 119 ALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKL 163
A RG A RTK+D +EAL KLTQ+E +L EK +V +L
Sbjct: 722 AERGGTA-RTKKDA------LEALQSKLTQSESQLAIEKLKVMEL 759
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2
Length = 1639
Score = 37.0 bits (84), Expect = 0.32, Method: Composition-based stats.
Identities = 48/213 (22%), Positives = 102/213 (47%), Gaps = 17/213 (7%)
Query: 42 IVEESKEDSKGLSLKEVVEKETVQLSEQHKRLSVRDLASKFDKNLTAAAKLADE--AKLR 99
+V+ SKE + EV + L++ +++ S+ K+ AA + ADE ++
Sbjct: 1274 VVQTSKEALR--KANEVYDTALTLLNDVNRQTQPEIDISQLKKDAVAANERADELLKQIT 1331
Query: 100 DVASLEGHVL--LKKLRDALEALRGRMAGRTKEDVE---KAISLVEALAVKLTQNEGELI 154
++++ G + + ++ EAL R + ED+E +A + + + Q + L
Sbjct: 1332 ELSNSNGELFADFETEQELTEALLKRAEQQQLEDIELLERAKAAHDKATKAVEQGDNTLK 1391
Query: 155 QEKFEVKKLANF---LKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSP 211
+ +KLA F ++++SE A+K + + EI++A +++ + EAL+ KN+
Sbjct: 1392 EANNTYEKLAGFQSDVQRSSESAEKALQTVPNIE-KEIQNAESLISQAEEALDGANKNAN 1450
Query: 212 KSKTQDVERLVDEIQEARR----IKRLHQPSKV 240
++K E + ++A + I+R +KV
Sbjct: 1451 EAKKNAQEAQLKYAEQASKDAELIRRKANETKV 1483
>sp|Q815G7|SECA_BACCR Protein translocase subunit SecA OS=Bacillus cereus (strain ATCC
14579 / DSM 31) GN=secA PE=3 SV=1
Length = 835
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 65/126 (51%), Gaps = 15/126 (11%)
Query: 100 DVASLEGHVLLKKLRDALEA--LRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEK 157
DV + V+ K+ ++ +E+ LRG + G K VE+A++L TQ E I+E
Sbjct: 600 DVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVAL-------HTQEE---IEED 649
Query: 158 FEVKKLANFLK-QASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQ 216
+ +K L ++L +D V +E+ A E + ++++ E E+EK P+ + +
Sbjct: 650 WNIKGLVDYLNTNLLQDGD--VKEEELRRLAPEEMSEPIIEKLIERYNEKEKLMPEEQMR 707
Query: 217 DVERLV 222
+ E++V
Sbjct: 708 EFEKVV 713
>sp|B7HEI8|SECA_BACC4 Protein translocase subunit SecA OS=Bacillus cereus (strain B4264)
GN=secA PE=3 SV=1
Length = 835
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 64/126 (50%), Gaps = 15/126 (11%)
Query: 100 DVASLEGHVLLKKLRDALEA--LRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEK 157
DV + V+ K+ ++ +E+ LRG + G K VE+A++L TQ E I+E
Sbjct: 600 DVLRQQREVIYKQRQEVMESDNLRGIIEGMMKSTVERAVAL-------HTQEE---IEED 649
Query: 158 FEVKKLANFLK-QASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQ 216
+ +K L ++L +D V +E+ A E + ++ + E E+EK P+ + +
Sbjct: 650 WNIKGLVDYLNTNLLQDGD--VKEEELRRLAPEEMSEPIIAKLIERYNEKEKLMPEEQMR 707
Query: 217 DVERLV 222
+ E++V
Sbjct: 708 EFEKVV 713
>sp|Q99104|MYO5A_MOUSE Unconventional myosin-Va OS=Mus musculus GN=Myo5a PE=1 SV=2
Length = 1853
Score = 32.3 bits (72), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 9/128 (7%)
Query: 39 DNQIVEESKEDSKGLSLKEVVEKETVQLSEQHKRLSVRDLASKFDKNLTAAAKLADEAKL 98
+++IVE++KE ++ + K V E + ++L +RL ++L ++F + L +E L
Sbjct: 1042 NHRIVEQAKEMTETMERKLVEETKQLELDLNDERLRYQNLLNEFSRLEERYDDLKEEMTL 1101
Query: 99 RDVASLEGHVLLKKLRDALE---------ALRGRMAGRTKEDVEKAISLVEALAVKLTQN 149
GH + E A +A RT+E +EK + L +L +KL +
Sbjct: 1102 MLNVPKPGHKRTDSTHSSNESEYTFSSEFAETEDIAPRTEEPIEKKVPLDMSLFLKLQKR 1161
Query: 150 EGELIQEK 157
EL QEK
Sbjct: 1162 VTELEQEK 1169
>sp|Q5R9I1|MTUS1_PONAB Microtubule-associated tumor suppressor 1 homolog OS=Pongo abelii
GN=MTUS1 PE=2 SV=1
Length = 1270
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 57 EVVEKETVQLSEQHKRLSVRDLASKFDKNLTAAAKL-----ADEAKLRDVASLEGHVLLK 111
E EK +QL EQ L+ SK + + + K+ A EA L ++ +GH + K
Sbjct: 1024 EEAEKYKMQLQEQFDNLNAAHETSKLEIEASHSEKVELLKKAYEASLSEIK--KGHEMEK 1081
Query: 112 KLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQAS 171
K +LE L +E +EK IS +++ E + + EK + ++ K+ +
Sbjct: 1082 K---SLEDL----LSEKQESLEKQISDLKS--------ENDALNEKLKSEEQ----KRRA 1122
Query: 172 EDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQE-ARR 230
+ L N + + E+ES +AV++ E L +++ K +E+LVD +
Sbjct: 1123 REKANLKNPQIMYLEQELESLKAVLEIKNEKLHQQD-----IKLMKMEKLVDNNTALVDK 1177
Query: 231 IKRLHQPSKVMDMEHELH-ALRTQI-REKSVLSLKIQKELAMNKR-AEENKSCLY 282
+KR Q ++ + + H A+ Q+ E++VL ++KE +NKR + EN+ L+
Sbjct: 1178 LKRFQQENEELKARMDKHMAISRQLSTEQAVLQESLEKESKVNKRLSMENEELLW 1232
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,302,907
Number of Sequences: 539616
Number of extensions: 5933754
Number of successful extensions: 22688
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 881
Number of HSP's that attempted gapping in prelim test: 21862
Number of HSP's gapped (non-prelim): 1540
length of query: 457
length of database: 191,569,459
effective HSP length: 121
effective length of query: 336
effective length of database: 126,275,923
effective search space: 42428710128
effective search space used: 42428710128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)