Query 012725
Match_columns 457
No_of_seqs 36 out of 38
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 05:39:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00409 recombination and DNA 91.2 2.5 5.3E-05 47.1 12.2 82 126-207 512-597 (782)
2 PF08317 Spc7: Spc7 kinetochor 85.2 30 0.00064 34.6 14.1 102 131-233 167-268 (325)
3 TIGR01069 mutS2 MutS2 family p 83.1 14 0.0003 41.4 11.9 80 126-205 507-590 (771)
4 PRK09039 hypothetical protein; 82.2 40 0.00086 34.4 13.8 120 142-270 44-183 (343)
5 PRK08476 F0F1 ATP synthase sub 80.8 24 0.00052 31.4 10.5 20 106-125 25-44 (141)
6 PRK04863 mukB cell division pr 80.7 84 0.0018 38.3 17.7 88 186-274 382-471 (1486)
7 TIGR02169 SMC_prok_A chromosom 80.2 57 0.0012 36.1 15.1 10 390-399 642-651 (1164)
8 smart00787 Spc7 Spc7 kinetocho 79.7 27 0.00058 35.5 11.6 140 108-254 140-280 (312)
9 PF09726 Macoilin: Transmembra 78.7 22 0.00047 39.8 11.5 35 239-273 546-580 (697)
10 TIGR02168 SMC_prok_B chromosom 78.7 1.1E+02 0.0024 33.7 17.8 10 369-378 599-608 (1179)
11 PRK08476 F0F1 ATP synthase sub 78.6 32 0.0007 30.6 10.5 25 166-190 67-91 (141)
12 TIGR01843 type_I_hlyD type I s 78.4 58 0.0013 31.8 13.1 13 413-425 386-398 (423)
13 PRK13461 F0F1 ATP synthase sub 78.3 31 0.00067 30.7 10.4 50 106-159 23-72 (159)
14 PRK09174 F0F1 ATP synthase sub 77.4 45 0.00097 31.8 11.8 53 105-161 70-122 (204)
15 PRK13454 F0F1 ATP synthase sub 77.4 61 0.0013 30.0 14.5 78 106-190 49-126 (181)
16 TIGR01843 type_I_hlyD type I s 77.1 31 0.00068 33.6 10.9 21 183-203 213-233 (423)
17 PF05557 MAD: Mitotic checkpoi 77.0 54 0.0012 36.1 13.7 130 214-382 564-704 (722)
18 KOG0994 Extracellular matrix g 74.6 84 0.0018 38.3 14.9 85 184-269 1644-1741(1758)
19 TIGR02169 SMC_prok_A chromosom 74.5 1.5E+02 0.0032 33.0 19.0 6 77-82 208-213 (1164)
20 TIGR01144 ATP_synt_b ATP synth 74.3 52 0.0011 28.6 10.5 48 106-157 13-60 (147)
21 PRK07353 F0F1 ATP synthase sub 73.3 60 0.0013 28.0 12.6 51 105-159 22-72 (140)
22 PF12325 TMF_TATA_bd: TATA ele 73.0 60 0.0013 29.1 10.7 87 135-229 14-109 (120)
23 PF12128 DUF3584: Protein of u 70.8 85 0.0018 36.8 14.0 61 133-193 638-698 (1201)
24 PF00038 Filament: Intermediat 70.1 40 0.00086 32.5 9.6 90 158-256 43-135 (312)
25 TIGR01147 V_ATP_synt_G vacuola 69.8 78 0.0017 28.3 10.6 78 169-267 13-101 (113)
26 CHL00118 atpG ATP synthase CF0 69.3 86 0.0019 28.1 12.6 49 106-158 40-88 (156)
27 PF14443 DBC1: DBC1 68.7 1.8 3.9E-05 39.4 0.3 15 302-317 54-68 (126)
28 TIGR02168 SMC_prok_B chromosom 68.6 1.9E+02 0.0042 31.9 18.4 28 243-270 864-891 (1179)
29 TIGR03545 conserved hypothetic 68.1 28 0.0006 38.0 9.0 82 172-256 149-230 (555)
30 PF03179 V-ATPase_G: Vacuolar 68.0 72 0.0016 26.7 10.4 32 167-198 9-40 (105)
31 KOG0161 Myosin class II heavy 67.3 3.5E+02 0.0076 34.4 19.6 150 115-268 1403-1581(1930)
32 PF12777 MT: Microtubule-bindi 67.0 48 0.001 33.3 9.9 91 132-222 10-110 (344)
33 PRK06231 F0F1 ATP synthase sub 65.8 1E+02 0.0022 29.3 11.3 19 106-124 66-84 (205)
34 PF14915 CCDC144C: CCDC144C pr 65.5 1.1E+02 0.0025 31.7 12.2 128 129-269 40-189 (305)
35 TIGR01010 BexC_CtrB_KpsE polys 64.7 1E+02 0.0022 30.7 11.5 39 217-257 222-261 (362)
36 PF10186 Atg14: UV radiation r 64.0 1.2E+02 0.0025 28.4 11.2 13 217-229 92-104 (302)
37 KOG0161 Myosin class II heavy 63.2 4.2E+02 0.009 33.8 18.9 140 112-256 1034-1189(1930)
38 PRK10930 FtsH protease regulat 61.0 50 0.0011 34.9 9.0 76 140-216 249-325 (419)
39 PRK06568 F0F1 ATP synthase sub 59.7 1.4E+02 0.003 27.9 10.6 78 108-192 24-101 (154)
40 PRK05759 F0F1 ATP synthase sub 59.0 1.3E+02 0.0027 26.4 12.5 75 107-188 23-97 (156)
41 PF05529 Bap31: B-cell recepto 57.9 47 0.001 30.4 7.4 31 212-257 157-187 (192)
42 PRK14473 F0F1 ATP synthase sub 56.8 1.5E+02 0.0032 26.6 12.6 49 105-157 25-73 (164)
43 TIGR03545 conserved hypothetic 56.3 2.4E+02 0.0052 31.1 13.3 58 110-169 173-230 (555)
44 PRK13460 F0F1 ATP synthase sub 56.1 68 0.0015 29.1 8.0 46 106-155 34-79 (173)
45 KOG0977 Nuclear envelope prote 55.9 3.3E+02 0.0072 30.4 16.9 62 77-141 85-155 (546)
46 TIGR00606 rad50 rad50. This fa 55.1 4.3E+02 0.0093 31.5 22.2 100 129-228 873-982 (1311)
47 cd07700 IgV_CD8_beta Immunoglo 55.1 57 0.0012 26.7 6.8 65 290-358 5-74 (107)
48 PRK13460 F0F1 ATP synthase sub 55.0 1.7E+02 0.0036 26.7 11.9 32 167-198 77-108 (173)
49 TIGR00606 rad50 rad50. This fa 54.9 3.1E+02 0.0068 32.6 14.8 36 110-145 805-840 (1311)
50 PF05957 DUF883: Bacterial pro 54.6 70 0.0015 26.4 7.2 48 160-207 11-58 (94)
51 TIGR02680 conserved hypothetic 53.8 3.6E+02 0.0078 32.5 15.2 168 98-269 210-385 (1353)
52 PRK09173 F0F1 ATP synthase sub 53.2 1.7E+02 0.0036 26.1 10.0 13 113-125 27-39 (159)
53 COG1566 EmrA Multidrug resista 52.9 1.7E+02 0.0037 30.5 11.1 77 131-207 92-171 (352)
54 PF13779 DUF4175: Domain of un 52.5 2.1E+02 0.0046 33.0 12.7 146 109-268 428-611 (820)
55 PRK13428 F0F1 ATP synthase sub 52.4 92 0.002 32.8 9.3 16 106-121 19-34 (445)
56 PF00038 Filament: Intermediat 52.4 1.1E+02 0.0023 29.6 9.1 145 111-258 28-182 (312)
57 cd03407 Band_7_4 A subgroup of 52.1 1.4E+02 0.003 28.7 9.8 72 129-206 142-213 (262)
58 PRK00106 hypothetical protein; 50.8 3E+02 0.0065 30.4 13.0 53 360-418 290-349 (535)
59 PRK06569 F0F1 ATP synthase sub 50.7 1E+02 0.0022 28.9 8.4 75 104-196 26-100 (155)
60 PRK04778 septation ring format 50.5 3.6E+02 0.0078 29.2 15.8 36 240-275 399-434 (569)
61 PRK00106 hypothetical protein; 49.9 2.5E+02 0.0055 30.9 12.3 30 165-194 46-75 (535)
62 PRK14471 F0F1 ATP synthase sub 49.7 1.4E+02 0.0029 26.8 8.8 20 106-125 26-45 (164)
63 CHL00118 atpG ATP synthase CF0 49.6 1.4E+02 0.0029 26.9 8.7 24 167-190 83-106 (156)
64 TIGR01005 eps_transp_fam exopo 49.6 1.9E+02 0.004 31.8 11.3 77 179-256 243-334 (754)
65 PF09730 BicD: Microtubule-ass 49.2 3.9E+02 0.0084 30.8 13.9 133 139-287 36-201 (717)
66 PRK05759 F0F1 ATP synthase sub 49.0 1.5E+02 0.0032 26.0 8.8 31 165-195 63-93 (156)
67 PRK09173 F0F1 ATP synthase sub 48.9 1.5E+02 0.0032 26.4 8.8 34 166-199 62-95 (159)
68 TIGR03007 pepcterm_ChnLen poly 48.9 2.1E+02 0.0045 29.6 11.0 78 179-257 210-294 (498)
69 PRK07352 F0F1 ATP synthase sub 48.8 1.4E+02 0.0031 27.0 8.9 31 166-196 79-109 (174)
70 PRK09174 F0F1 ATP synthase sub 48.8 1.5E+02 0.0033 28.3 9.4 32 165-196 112-143 (204)
71 PRK13453 F0F1 ATP synthase sub 48.4 1.2E+02 0.0026 27.7 8.4 71 106-194 36-106 (173)
72 PF02403 Seryl_tRNA_N: Seryl-t 46.9 1.7E+02 0.0037 24.4 9.9 97 104-204 2-98 (108)
73 PRK03598 putative efflux pump 46.9 1.2E+02 0.0025 29.6 8.5 24 351-374 255-279 (331)
74 PF05597 Phasin: Poly(hydroxya 46.8 2.3E+02 0.005 25.9 10.7 42 149-191 46-87 (132)
75 PRK14472 F0F1 ATP synthase sub 46.8 2.3E+02 0.0049 25.8 12.6 48 106-157 36-83 (175)
76 PRK02224 chromosome segregatio 46.3 4.5E+02 0.0099 29.2 16.2 27 109-135 181-207 (880)
77 PRK09039 hypothetical protein; 46.3 3.5E+02 0.0075 27.8 14.4 44 184-228 141-184 (343)
78 PRK10476 multidrug resistance 45.6 2E+02 0.0043 28.3 10.0 17 183-199 148-164 (346)
79 PF05701 WEMBL: Weak chloropla 45.3 4.2E+02 0.0092 28.5 17.8 115 151-275 316-430 (522)
80 PF02841 GBP_C: Guanylate-bind 45.1 2.2E+02 0.0047 28.1 10.1 179 54-240 72-266 (297)
81 PF09731 Mitofilin: Mitochondr 45.0 4.1E+02 0.009 28.3 16.0 78 174-275 365-443 (582)
82 PF04201 TPD52: Tumour protein 44.9 56 0.0012 31.1 5.8 26 243-268 41-66 (162)
83 PF12240 Angiomotin_C: Angiomo 44.6 2.4E+02 0.0053 28.0 10.1 139 106-267 22-165 (205)
84 PRK12704 phosphodiesterase; Pr 44.5 3.1E+02 0.0068 29.8 11.9 13 374-386 284-296 (520)
85 PRK14472 F0F1 ATP synthase sub 44.4 1.8E+02 0.0038 26.5 8.8 28 167-194 79-106 (175)
86 TIGR03825 FliH_bacil flagellar 44.2 2.5E+02 0.0053 27.2 10.2 26 167-192 46-71 (255)
87 PRK13455 F0F1 ATP synthase sub 43.7 2.6E+02 0.0056 25.6 10.0 37 113-153 52-88 (184)
88 PRK08475 F0F1 ATP synthase sub 43.6 1.9E+02 0.0041 26.5 8.9 24 166-189 82-105 (167)
89 PRK07353 F0F1 ATP synthase sub 43.6 2.1E+02 0.0047 24.6 8.9 31 165-195 64-94 (140)
90 PRK02224 chromosome segregatio 43.3 5E+02 0.011 28.8 17.2 36 237-272 411-446 (880)
91 PF04111 APG6: Autophagy prote 43.0 1.4E+02 0.003 30.2 8.6 85 261-346 122-234 (314)
92 PF09177 Syntaxin-6_N: Syntaxi 42.8 90 0.0019 26.0 6.1 59 104-167 35-93 (97)
93 PF07798 DUF1640: Protein of u 42.5 2.8E+02 0.006 25.6 9.8 44 155-198 113-156 (177)
94 PRK12704 phosphodiesterase; Pr 42.5 3.1E+02 0.0068 29.8 11.6 27 168-194 45-71 (520)
95 PLN02320 seryl-tRNA synthetase 42.3 1.9E+02 0.0042 31.6 10.0 101 102-210 65-167 (502)
96 PF10186 Atg14: UV radiation r 42.1 2.1E+02 0.0046 26.8 9.2 39 183-229 59-97 (302)
97 PF15619 Lebercilin: Ciliary p 41.8 3.2E+02 0.007 26.2 10.8 93 110-209 98-193 (194)
98 PF08317 Spc7: Spc7 kinetochor 41.3 3.9E+02 0.0084 26.9 12.7 29 124-152 203-231 (325)
99 PRK08475 F0F1 ATP synthase sub 40.5 2.2E+02 0.0048 26.1 8.8 53 149-201 54-106 (167)
100 PRK03963 V-type ATP synthase s 40.4 1.3E+02 0.0028 27.5 7.3 37 164-200 9-45 (198)
101 PRK04863 mukB cell division pr 40.4 8.2E+02 0.018 30.4 16.0 122 128-269 291-414 (1486)
102 COG1666 Uncharacterized protei 40.3 18 0.00039 34.5 1.8 23 118-140 125-150 (165)
103 CHL00019 atpF ATP synthase CF0 40.3 2.3E+02 0.0049 26.1 8.9 28 167-194 85-112 (184)
104 CHL00019 atpF ATP synthase CF0 40.1 2.2E+02 0.0048 26.2 8.8 28 172-199 79-106 (184)
105 PRK10807 paraquat-inducible pr 39.8 1.4E+02 0.003 32.6 8.5 109 49-157 408-534 (547)
106 PRK13453 F0F1 ATP synthase sub 39.7 3E+02 0.0065 25.2 12.6 25 172-196 73-97 (173)
107 PRK06231 F0F1 ATP synthase sub 39.6 2.1E+02 0.0045 27.2 8.8 24 168-191 110-133 (205)
108 cd03404 Band_7_HflK Band_7_Hfl 39.5 3.3E+02 0.0071 25.9 10.1 103 100-209 134-249 (266)
109 PF03962 Mnd1: Mnd1 family; I 39.5 1.8E+02 0.0038 27.5 8.2 48 178-229 101-148 (188)
110 PLN03144 Carbon catabolite rep 39.4 56 0.0012 36.3 5.7 41 331-372 180-228 (606)
111 TIGR01933 hflK HflK protein. H 39.3 2.7E+02 0.0058 26.4 9.4 95 105-206 112-219 (261)
112 cd05852 Ig5_Contactin-1 Fifth 38.7 47 0.001 25.8 3.6 22 291-315 1-22 (73)
113 PF07888 CALCOCO1: Calcium bin 38.6 6.1E+02 0.013 28.4 13.1 58 142-200 169-226 (546)
114 PF05103 DivIVA: DivIVA protei 38.4 29 0.00062 29.3 2.6 73 126-198 17-100 (131)
115 TIGR03017 EpsF chain length de 38.0 4.4E+02 0.0096 26.6 11.6 38 218-256 263-300 (444)
116 PF07200 Mod_r: Modifier of ru 37.9 2.8E+02 0.0061 24.3 11.0 101 129-231 33-139 (150)
117 PRK13428 F0F1 ATP synthase sub 37.8 1.8E+02 0.0039 30.8 8.8 12 129-140 34-45 (445)
118 PF02841 GBP_C: Guanylate-bind 37.8 4.1E+02 0.0089 26.2 11.9 30 129-161 185-214 (297)
119 PF07851 TMPIT: TMPIT-like pro 37.6 2.4E+02 0.0053 29.5 9.5 75 151-229 7-81 (330)
120 PRK14475 F0F1 ATP synthase sub 36.8 2.8E+02 0.0062 25.1 8.9 32 165-196 69-100 (167)
121 PF03179 V-ATPase_G: Vacuolar 36.8 1.9E+02 0.004 24.3 7.2 79 165-264 18-96 (105)
122 PRK01919 tatB sec-independent 36.4 96 0.0021 29.8 5.9 107 189-331 36-153 (169)
123 PRK01005 V-type ATP synthase s 36.4 1.3E+02 0.0029 29.0 7.0 23 166-188 43-65 (207)
124 KOG4246 Predicted DNA-binding 36.0 11 0.00024 43.6 -0.2 32 302-346 537-568 (1194)
125 TIGR03321 alt_F1F0_F0_B altern 35.8 2.6E+02 0.0057 26.9 8.9 26 167-192 66-91 (246)
126 PF04461 DUF520: Protein of un 35.7 20 0.00044 33.9 1.4 19 123-141 129-147 (160)
127 TIGR00996 Mtu_fam_mce virulenc 35.6 4.1E+02 0.0088 25.5 11.9 70 112-182 150-219 (291)
128 PRK06568 F0F1 ATP synthase sub 35.6 3.7E+02 0.008 25.1 11.1 33 166-198 64-96 (154)
129 PRK11637 AmiB activator; Provi 35.5 5.2E+02 0.011 26.7 17.1 8 385-392 360-367 (428)
130 KOG0993 Rab5 GTPase effector R 34.6 2.3E+02 0.005 31.2 9.0 119 146-269 11-182 (542)
131 PF14257 DUF4349: Domain of un 34.5 2.8E+02 0.0062 26.5 8.9 90 103-203 97-192 (262)
132 PF04388 Hamartin: Hamartin pr 34.5 4.9E+02 0.011 29.2 11.8 46 207-255 591-645 (668)
133 COG2433 Uncharacterized conser 34.3 5.9E+02 0.013 29.2 12.2 97 132-241 424-520 (652)
134 PF07888 CALCOCO1: Calcium bin 34.3 7.1E+02 0.015 27.9 14.4 27 243-269 288-314 (546)
135 TIGR01144 ATP_synt_b ATP synth 33.5 3.2E+02 0.007 23.7 9.2 32 165-196 54-85 (147)
136 PF00430 ATP-synt_B: ATP synth 33.2 2.4E+02 0.0053 23.5 7.3 26 167-192 60-85 (132)
137 PF09726 Macoilin: Transmembra 33.1 2.7E+02 0.0058 31.6 9.6 47 103-156 422-474 (697)
138 TIGR03319 YmdA_YtgF conserved 32.9 6.1E+02 0.013 27.6 11.9 26 361-391 270-295 (514)
139 TIGR03319 YmdA_YtgF conserved 32.5 6.9E+02 0.015 27.2 13.6 26 168-193 39-64 (514)
140 PRK13454 F0F1 ATP synthase sub 32.4 3.7E+02 0.0081 24.9 9.0 32 165-196 90-121 (181)
141 COG1566 EmrA Multidrug resista 31.9 5.8E+02 0.013 26.7 11.2 22 179-200 150-171 (352)
142 COG1196 Smc Chromosome segrega 31.9 9.2E+02 0.02 28.5 16.7 20 239-258 885-904 (1163)
143 KOG0996 Structural maintenance 31.7 8.1E+02 0.018 30.2 13.3 26 84-110 722-749 (1293)
144 TIGR01730 RND_mfp RND family e 31.3 2.7E+02 0.0058 26.1 8.0 20 150-169 77-96 (322)
145 COG1012 PutA NAD-dependent ald 30.9 2.3E+02 0.0051 30.0 8.3 77 84-180 40-117 (472)
146 PRK05431 seryl-tRNA synthetase 30.5 5.7E+02 0.012 26.9 11.0 98 104-209 2-102 (425)
147 cd00099 IgV Immunoglobulin var 30.5 99 0.0021 24.1 4.3 52 290-344 5-56 (105)
148 COG2433 Uncharacterized conser 30.2 1.7E+02 0.0036 33.3 7.4 32 242-273 478-509 (652)
149 TIGR00831 a_cpa1 Na+/H+ antipo 30.1 1.9E+02 0.0042 30.8 7.6 63 161-235 401-463 (525)
150 PLN02678 seryl-tRNA synthetase 30.0 6.9E+02 0.015 27.0 11.6 93 115-211 17-109 (448)
151 PF07106 TBPIP: Tat binding pr 29.6 69 0.0015 28.8 3.7 72 193-272 32-106 (169)
152 TIGR00634 recN DNA repair prot 29.6 7.4E+02 0.016 26.7 12.0 43 212-255 297-339 (563)
153 PF05130 FlgN: FlgN protein; 29.4 3.2E+02 0.0069 22.4 8.0 48 108-155 15-62 (143)
154 KOG0996 Structural maintenance 29.4 1.2E+03 0.026 29.0 15.2 140 108-268 885-1042(1293)
155 TIGR01010 BexC_CtrB_KpsE polys 29.2 2.9E+02 0.0063 27.5 8.3 23 65-87 65-87 (362)
156 PF12128 DUF3584: Protein of u 29.1 1E+03 0.023 28.3 15.4 65 55-124 601-665 (1201)
157 PF11657 Activator-TraM: Trans 29.1 4.4E+02 0.0096 24.6 8.8 61 172-234 64-124 (144)
158 PF15619 Lebercilin: Ciliary p 28.9 3.8E+02 0.0083 25.7 8.7 102 142-258 87-191 (194)
159 PRK00409 recombination and DNA 28.7 8.2E+02 0.018 28.0 12.5 15 125-139 497-511 (782)
160 cd05899 IgV_TCR_beta Immunoglo 28.4 1.6E+02 0.0035 23.9 5.4 35 290-328 12-46 (110)
161 TIGR03185 DNA_S_dndD DNA sulfu 28.3 7.4E+02 0.016 27.1 11.7 58 327-389 572-636 (650)
162 PF10168 Nup88: Nuclear pore c 28.2 9.4E+02 0.02 27.5 13.9 28 152-179 573-600 (717)
163 PF11740 KfrA_N: Plasmid repli 28.1 2.8E+02 0.006 23.2 6.8 41 165-205 73-113 (120)
164 PF10174 Cast: RIM-binding pro 27.9 1E+03 0.022 27.7 14.4 155 55-209 404-584 (775)
165 cd00336 Ribosomal_L22 Ribosoma 27.9 1.6E+02 0.0035 24.8 5.4 27 110-143 12-38 (105)
166 PF09969 DUF2203: Uncharacteri 27.8 2E+02 0.0043 25.7 6.2 59 189-258 5-63 (120)
167 PRK13461 F0F1 ATP synthase sub 27.6 4.4E+02 0.0096 23.5 9.2 24 167-190 66-89 (159)
168 PRK03918 chromosome segregatio 27.6 8.7E+02 0.019 26.9 17.7 40 115-154 503-542 (880)
169 PRK14473 F0F1 ATP synthase sub 27.5 4.5E+02 0.0098 23.5 11.1 24 166-189 68-91 (164)
170 PF08232 Striatin: Striatin fa 27.5 97 0.0021 27.9 4.3 19 228-255 52-70 (134)
171 cd05880 Ig_EVA1 Immunoglobulin 27.4 70 0.0015 26.9 3.2 36 291-326 13-49 (115)
172 PF10174 Cast: RIM-binding pro 27.0 1E+03 0.023 27.6 14.7 45 185-229 434-478 (775)
173 PF01322 Cytochrom_C_2: Cytoch 27.0 3.9E+02 0.0085 22.6 11.4 94 103-202 4-113 (122)
174 COG2811 NtpF Archaeal/vacuolar 26.7 2.1E+02 0.0045 25.8 6.1 40 167-206 23-63 (108)
175 PF05701 WEMBL: Weak chloropla 26.5 5E+02 0.011 28.0 10.0 96 113-208 307-425 (522)
176 KOG4557 Origin recognition com 26.4 68 0.0015 32.5 3.4 44 64-129 85-128 (262)
177 KOG1772 Vacuolar H+-ATPase V1 26.4 3.2E+02 0.0069 24.9 7.1 48 165-226 31-78 (108)
178 TIGR00998 8a0101 efflux pump m 26.3 5.9E+02 0.013 24.5 10.0 8 217-224 147-154 (334)
179 PF07926 TPR_MLP1_2: TPR/MLP1/ 26.2 4.4E+02 0.0094 23.2 8.0 56 150-210 48-103 (132)
180 TIGR01000 bacteriocin_acc bact 26.1 7.6E+02 0.016 25.7 12.8 11 413-423 427-437 (457)
181 PRK09578 periplasmic multidrug 25.4 2.9E+02 0.0062 27.7 7.5 32 183-214 149-180 (385)
182 PRK02292 V-type ATP synthase s 25.3 3.9E+02 0.0084 24.3 7.7 20 168-187 34-53 (188)
183 PRK05412 putative nucleotide-b 25.2 46 0.001 31.7 1.9 18 123-140 129-146 (161)
184 cd04276 ZnMc_MMP_like_2 Zinc-d 25.0 1.1E+02 0.0023 29.3 4.2 48 294-352 48-97 (197)
185 COG0215 CysS Cysteinyl-tRNA sy 25.0 5.7E+02 0.012 28.1 10.0 120 103-234 311-435 (464)
186 PF00769 ERM: Ezrin/radixin/mo 24.8 6.7E+02 0.015 24.6 14.2 44 217-275 76-119 (246)
187 TIGR03185 DNA_S_dndD DNA sulfu 24.8 9.5E+02 0.02 26.3 20.6 47 184-230 388-435 (650)
188 CHL00034 rpl22 ribosomal prote 24.7 1.8E+02 0.0039 25.8 5.3 47 108-185 19-65 (117)
189 PF06670 Etmic-2: Microneme pr 24.6 2E+02 0.0044 29.9 6.3 71 298-396 148-218 (379)
190 TIGR02302 aProt_lowcomp conser 24.5 1.1E+03 0.024 27.7 12.7 105 112-230 462-582 (851)
191 TIGR01837 PHA_granule_1 poly(h 24.5 4.9E+02 0.011 22.9 9.5 72 149-226 33-106 (118)
192 PRK10404 hypothetical protein; 24.3 3.3E+02 0.0071 23.7 6.8 44 163-206 21-64 (101)
193 PRK13729 conjugal transfer pil 24.2 72 0.0016 34.8 3.3 13 242-254 108-120 (475)
194 PRK10884 SH3 domain-containing 24.1 6.5E+02 0.014 24.4 9.4 33 243-275 137-169 (206)
195 KOG4809 Rab6 GTPase-interactin 23.9 1.1E+03 0.025 27.0 13.7 70 139-208 375-456 (654)
196 PRK15030 multidrug efflux syst 23.9 3.2E+02 0.007 27.7 7.6 59 152-214 118-182 (397)
197 TIGR01005 eps_transp_fam exopo 23.8 1E+03 0.022 26.3 17.6 46 185-230 343-390 (754)
198 PF04012 PspA_IM30: PspA/IM30 23.7 6E+02 0.013 23.6 9.2 113 160-273 10-126 (221)
199 TIGR03794 NHPM_micro_HlyD NHPM 23.6 8E+02 0.017 25.1 15.6 24 245-268 227-250 (421)
200 TIGR00998 8a0101 efflux pump m 23.6 6.7E+02 0.014 24.2 11.7 19 151-169 122-140 (334)
201 PRK14474 F0F1 ATP synthase sub 23.5 6.2E+02 0.013 24.8 9.2 88 140-227 39-127 (250)
202 PRK15136 multidrug efflux syst 23.4 5.3E+02 0.011 26.4 9.1 73 142-229 97-171 (390)
203 PF08285 DPM3: Dolichol-phosph 23.3 69 0.0015 27.5 2.4 18 213-230 65-82 (91)
204 PF09012 FeoC: FeoC like trans 23.1 66 0.0014 25.1 2.1 25 64-88 6-30 (69)
205 PRK06328 type III secretion sy 23.1 4.6E+02 0.0099 25.4 8.1 37 341-379 161-198 (223)
206 TIGR03007 pepcterm_ChnLen poly 23.0 6.6E+02 0.014 26.0 9.7 34 240-273 256-289 (498)
207 cd05714 Ig_CSPGs_LP Immunoglob 23.0 1.9E+02 0.0041 23.3 4.8 17 305-321 19-35 (106)
208 PF00769 ERM: Ezrin/radixin/mo 22.9 7.3E+02 0.016 24.4 10.2 44 179-230 74-117 (246)
209 PRK10780 periplasmic chaperone 22.8 5.7E+02 0.012 23.1 9.1 7 280-286 138-144 (165)
210 PF10037 MRP-S27: Mitochondria 22.6 7.9E+02 0.017 26.5 10.4 23 101-123 253-275 (429)
211 COG0172 SerS Seryl-tRNA synthe 22.4 7E+02 0.015 27.1 10.0 104 110-215 4-110 (429)
212 KOG0994 Extracellular matrix g 22.4 1.2E+03 0.026 29.3 12.5 39 188-226 1592-1632(1758)
213 KOG0999 Microtubule-associated 22.2 1E+03 0.022 27.5 11.4 107 157-267 14-136 (772)
214 PRK01558 V-type ATP synthase s 22.1 5.1E+02 0.011 24.4 8.1 32 165-196 26-57 (198)
215 PRK09098 type III secretion sy 22.0 6.3E+02 0.014 24.7 8.9 30 167-196 45-74 (233)
216 COG0711 AtpF F0F1-type ATP syn 22.0 6.1E+02 0.013 23.1 8.7 77 107-190 25-101 (161)
217 cd07114 ALDH_DhaS Uncharacteri 21.9 2.7E+02 0.0057 28.7 6.7 64 97-177 36-99 (457)
218 PF09787 Golgin_A5: Golgin sub 21.7 1E+03 0.022 25.7 11.0 101 152-258 278-382 (511)
219 PF11629 Mst1_SARAH: C termina 21.6 1.1E+02 0.0023 24.5 2.9 22 241-262 22-43 (49)
220 PF05878 Phyto_Pns9_10: Phytor 21.5 64 0.0014 33.5 2.2 47 217-264 174-220 (312)
221 COG4575 ElaB Uncharacterized c 21.2 1.3E+02 0.0028 27.0 3.7 62 75-140 17-80 (104)
222 PF09832 DUF2059: Uncharacteri 21.2 3.5E+02 0.0076 20.5 5.7 42 138-190 9-50 (64)
223 KOG0249 LAR-interacting protei 21.1 1.4E+03 0.031 27.1 13.2 30 58-87 72-101 (916)
224 TIGR03017 EpsF chain length de 21.1 8.7E+02 0.019 24.6 10.3 8 247-254 344-351 (444)
225 smart00340 HALZ homeobox assoc 21.0 94 0.002 24.3 2.5 25 217-243 20-44 (44)
226 PTZ00464 SNF-7-like protein; P 20.9 7.9E+02 0.017 24.0 11.5 15 214-228 122-136 (211)
227 cd07139 ALDH_AldA-Rv0768 Mycob 20.9 3.9E+02 0.0085 27.6 7.6 64 97-178 53-118 (471)
228 PRK10476 multidrug resistance 20.8 8.2E+02 0.018 24.1 13.6 45 180-229 121-165 (346)
229 TIGR01069 mutS2 MutS2 family p 20.8 1.3E+03 0.028 26.4 12.2 13 126-138 493-505 (771)
230 PRK13455 F0F1 ATP synthase sub 20.8 6.6E+02 0.014 23.0 9.8 30 166-195 87-116 (184)
231 COG0711 AtpF F0F1-type ATP syn 20.8 6.5E+02 0.014 23.0 10.4 46 149-194 38-83 (161)
232 PF12699 phiKZ_IP: phiKZ-like 20.6 1.3E+02 0.0027 30.7 4.1 92 75-179 229-322 (339)
233 cd05865 Ig1_NCAM-1 First immun 20.6 1.1E+02 0.0024 25.1 3.1 26 288-315 12-37 (96)
234 cd03405 Band_7_HflC Band_7_Hfl 20.5 5.4E+02 0.012 23.8 7.8 32 169-200 185-216 (242)
235 PF01991 vATP-synt_E: ATP synt 20.4 3.9E+02 0.0084 23.8 6.6 24 165-188 12-35 (198)
236 PF14174 YycC: YycC-like prote 20.3 1.2E+02 0.0025 24.6 2.9 30 87-116 9-40 (53)
237 PF12999 PRKCSH-like: Glucosid 20.3 2.2E+02 0.0047 27.5 5.3 53 175-228 120-172 (176)
238 PRK09216 rplM 50S ribosomal pr 20.1 1.1E+02 0.0024 28.3 3.2 43 312-358 14-64 (144)
239 PRK00565 rplV 50S ribosomal pr 20.1 2.2E+02 0.0049 24.7 5.0 46 109-185 13-58 (112)
No 1
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.25 E-value=2.5 Score=47.14 Aligned_cols=82 Identities=24% Similarity=0.276 Sum_probs=64.4
Q ss_pred CCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 012725 126 GRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASED----AKKLVNQEKSFACAEIESARAVVQRFGE 201 (457)
Q Consensus 126 GrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD----AkkiV~eERa~A~aEIE~ARAaV~Rve~ 201 (457)
+....++++.|.=.+..-.++-++..|+.+.+.|++++-+-++..-+. -+++.++.+..|...|+.||..+..+-.
T Consensus 512 ~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~ 591 (782)
T PRK00409 512 GEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIK 591 (782)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888888888888888888887777665444 5577888888888889999888887777
Q ss_pred HHHHHH
Q 012725 202 ALEEEE 207 (457)
Q Consensus 202 aleEqe 207 (457)
-|++..
T Consensus 592 ~lk~~~ 597 (782)
T PRK00409 592 ELRQLQ 597 (782)
T ss_pred HHHHhh
Confidence 777653
No 2
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=85.22 E-value=30 Score=34.59 Aligned_cols=102 Identities=25% Similarity=0.357 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012725 131 DVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNS 210 (457)
Q Consensus 131 dVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s 210 (457)
.+.+.+..+.-+-.++..+-.+|..+-...+.++.-+....-+-=.-..++=+...++|+.=|.-+..++.-+++-+...
T Consensus 167 ~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 167 KLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666665555555555555444444444433322221111111222222333333333333334444333333322
Q ss_pred CCCcchhHHHHHHHHHHHHhhhh
Q 012725 211 PKSKTQDVERLVDEIQEARRIKR 233 (457)
Q Consensus 211 ~~s~kqd~e~L~~EVqEARRIKm 233 (457)
...++...++..+|++|.|+..
T Consensus 247 -~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 247 -EELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Confidence 2233366677777777777765
No 3
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=83.08 E-value=14 Score=41.42 Aligned_cols=80 Identities=24% Similarity=0.221 Sum_probs=52.7
Q ss_pred CCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhh----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 012725 126 GRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQAS----EDAKKLVNQEKSFACAEIESARAVVQRFGE 201 (457)
Q Consensus 126 GrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqAS----eDAkkiV~eERa~A~aEIE~ARAaV~Rve~ 201 (457)
+..+.++++-|.=.+..-.++-+...++.+.+.|++++-.-|++.. +.-+++.++.+..|...|+.||.-+..+-.
T Consensus 507 ~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~ 586 (771)
T TIGR01069 507 GEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIR 586 (771)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777777777666655554433 334567777777777777777776666665
Q ss_pred HHHH
Q 012725 202 ALEE 205 (457)
Q Consensus 202 aleE 205 (457)
-|++
T Consensus 587 ~lk~ 590 (771)
T TIGR01069 587 ELKE 590 (771)
T ss_pred HHHh
Confidence 5554
No 4
>PRK09039 hypothetical protein; Validated
Probab=82.24 E-value=40 Score=34.35 Aligned_cols=120 Identities=22% Similarity=0.299 Sum_probs=59.3
Q ss_pred HhhhhhcchhhhhhHHHHHHHHHHHHHH---hhHHHHHHHHH----------hhhhhHHHHH-------HHHHHHHHHHH
Q 012725 142 LAVKLTQNEGELIQEKFEVKKLANFLKQ---ASEDAKKLVNQ----------EKSFACAEIE-------SARAVVQRFGE 201 (457)
Q Consensus 142 LavqltqrE~ELiQeK~EVkKlA~~lKq---ASeDAkkiV~e----------ERa~A~aEIE-------~ARAaV~Rve~ 201 (457)
|..++|.++.||-+-..++.-|+..|.. .+.|....+.+ +|+....-.+ .+.+.....++
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~ 123 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHH
Confidence 4556666666666666666666644432 23333222221 2221111111 11223333444
Q ss_pred HHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012725 202 ALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKELAM 270 (457)
Q Consensus 202 aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~~ 270 (457)
.|.+....+..... ++..|+.+|..-|+= .-.+|.+|.++..+.++.....-.|..+|..
T Consensus 124 ~L~~~k~~~se~~~-~V~~L~~qI~aLr~Q--------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 124 ELDSEKQVSARALA-QVELLNQQIAALRRQ--------LAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444433333 555555555555543 4455666666666666666677777777753
No 5
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=80.82 E-value=24 Score=31.37 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHhhcccC
Q 012725 106 GHVLLKKLRDALEALRGRMA 125 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRva 125 (457)
+++|.|.++.+|+.=+-++.
T Consensus 25 ~kfl~kPi~~~l~~R~~~I~ 44 (141)
T PRK08476 25 NSWLYKPLLKFMDNRNASIK 44 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56788888888887665554
No 6
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.70 E-value=84 Score=38.31 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccC--CcccccchHHHHHHHHHHHHHhHHHHH
Q 012725 186 CAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQ--PSKVMDMEHELHALRTQIREKSVLSLK 263 (457)
Q Consensus 186 ~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~--PSKvMDME~El~~LR~ql~EKs~~~v~ 263 (457)
.++++.+...+..++..+.+....... -.+++..+...++...++++|-+ |--.-+++..+.....++.++......
T Consensus 382 eeEleelEeeLeeLqeqLaelqqel~e-lQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~e 460 (1486)
T PRK04863 382 EARAEAAEEEVDELKSQLADYQQALDV-QQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLS 460 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444332222111 12367788888999999999987 334456778888888888888888888
Q ss_pred HHHHHHHhhhh
Q 012725 264 IQKELAMNKRA 274 (457)
Q Consensus 264 L~KEL~~~kr~ 274 (457)
+..+|..++..
T Consensus 461 lE~kL~~lea~ 471 (1486)
T PRK04863 461 LEQKLSVAQAA 471 (1486)
T ss_pred HHHHHHHHHHH
Confidence 88888765543
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=80.20 E-value=57 Score=36.07 Aligned_cols=10 Identities=10% Similarity=0.415 Sum_probs=5.1
Q ss_pred EeecCCcCCC
Q 012725 390 SQMNGQDYSS 399 (457)
Q Consensus 390 ~Q~NG~d~~s 399 (457)
+-++|..+..
T Consensus 642 vTldG~~~~~ 651 (1164)
T TIGR02169 642 VTLEGELFEK 651 (1164)
T ss_pred EEeCceeEcC
Confidence 4446665543
No 8
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.71 E-value=27 Score=35.46 Aligned_cols=140 Identities=20% Similarity=0.224 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHh-hHHHHHHHHHhhhhhH
Q 012725 108 VLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQA-SEDAKKLVNQEKSFAC 186 (457)
Q Consensus 108 vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqA-SeDAkkiV~eERa~A~ 186 (457)
-|++.|+..|+.=.+.+-. .+.-+.+-+..+.-+--+|..+-.+|..|=..++.+..-+..- .++.+++- ++=+...
T Consensus 140 kllegLk~~L~~~~~~l~~-D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk-~~l~~~~ 217 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKE-DYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK-EKLKKLL 217 (312)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH-HHHHHHH
Confidence 3455555555543333321 1222555666666666666666666666666666555555442 22333333 5555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHH
Q 012725 187 AEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQI 254 (457)
Q Consensus 187 aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql 254 (457)
.+|+..+.-+.-+++-|++-+..-. ..++...++..+|++|+++.-=+... + -+|+..|+.++
T Consensus 218 ~ei~~~~~~l~e~~~~l~~l~~~I~-~~~~~k~e~~~~I~~ae~~~~~~r~~---t-~~Ei~~Lk~~~ 280 (312)
T smart00787 218 QEIMIKVKKLEELEEELQELESKIE-DLTNKKSELNTEIAEAEKKLEQCRGF---T-FKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCC---C-HHHHHHHHHHH
Confidence 6777777766666666666555433 23447888999999999976332222 2 25666666554
No 9
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.75 E-value=22 Score=39.83 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=26.4
Q ss_pred ccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 012725 239 KVMDMEHELHALRTQIREKSVLSLKIQKELAMNKR 273 (457)
Q Consensus 239 KvMDME~El~~LR~ql~EKs~~~v~L~KEL~~~kr 273 (457)
+.=|||.||+.||..+..|-..+..|.+|+.-...
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34478888888888888888888888888753333
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=78.67 E-value=1.1e+02 Score=33.68 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=4.5
Q ss_pred CchhHHHHHh
Q 012725 369 GLGSYVETLL 378 (457)
Q Consensus 369 GL~~yVEaL~ 378 (457)
|...+|..|.
T Consensus 599 ~~~~~~~dl~ 608 (1179)
T TIGR02168 599 GFLGVAKDLV 608 (1179)
T ss_pred chhHHHHHHh
Confidence 4444444443
No 11
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=78.56 E-value=32 Score=30.59 Aligned_cols=25 Identities=36% Similarity=0.381 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEIE 190 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEIE 190 (457)
-|.+|..+|.+++++.++.|+.|.+
T Consensus 67 ~l~~Ar~eA~~~~~~a~~~A~~ea~ 91 (141)
T PRK08476 67 ILKNAREEANKIRQKAIAKAKEEAE 91 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554433
No 12
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=78.37 E-value=58 Score=31.80 Aligned_cols=13 Identities=15% Similarity=0.135 Sum_probs=9.1
Q ss_pred Eeeccceeeeeee
Q 012725 413 KLCRGWITNLEKY 425 (457)
Q Consensus 413 KL~KG~~t~Ak~Y 425 (457)
.|.-|.++.+.++
T Consensus 386 ~l~~Gm~~~v~i~ 398 (423)
T TIGR01843 386 ELSPGMPVTADIK 398 (423)
T ss_pred ccCCCCEEEEEEE
Confidence 4667888877754
No 13
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=78.29 E-value=31 Score=30.69 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHH
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFE 159 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~E 159 (457)
..++.|.+.+.|+.=+.++.+ ++++|-..-+-..-.+.+-+..|.+-+.|
T Consensus 23 ~~f~~kpi~~~l~~R~~~I~~----~l~~A~~~~~eA~~~~~e~~~~l~~a~~e 72 (159)
T PRK13461 23 KHFFFDKIKAVIDSRQSEIDN----KIEKADEDQKKARELKLKNERELKNAKEE 72 (159)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887777654 44444444333333444444444444433
No 14
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=77.39 E-value=45 Score=31.79 Aligned_cols=53 Identities=25% Similarity=0.379 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHH
Q 012725 105 EGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVK 161 (457)
Q Consensus 105 er~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVk 161 (457)
=..++++.++++|+.=+.++.+ ++++|-.+-+-..-.+.+-|.+|.+-+.|..
T Consensus 70 L~k~~~~pI~~vLe~R~~~I~~----~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~ 122 (204)
T PRK09174 70 MSRVILPRIGGIIETRRDRIAQ----DLDQAARLKQEADAAVAAYEQELAQARAKAH 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999988777754 5555555544444444444555544444433
No 15
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=77.39 E-value=61 Score=30.02 Aligned_cols=78 Identities=17% Similarity=0.220 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFA 185 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 185 (457)
+.+++++++.+|+.=+.++. +++++|-..-+-..-.+.+-|..|.+-|.|-..+ +..|-.+|+++.++.+..|
T Consensus 49 ~k~l~~PI~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~i---i~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 49 TRVALPRIGAVLAERQGTIT----NDLAAAEELKQKAVEAEKAYNKALADARAEAQRI---VAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 55677888888888777665 4555555544444444444444444444443332 3344444455555555444
Q ss_pred HHHHH
Q 012725 186 CAEIE 190 (457)
Q Consensus 186 ~aEIE 190 (457)
++|++
T Consensus 122 ~~e~~ 126 (181)
T PRK13454 122 DAEIA 126 (181)
T ss_pred HHHHH
Confidence 44433
No 16
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=77.07 E-value=31 Score=33.63 Aligned_cols=21 Identities=14% Similarity=0.069 Sum_probs=8.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 012725 183 SFACAEIESARAVVQRFGEAL 203 (457)
Q Consensus 183 a~A~aEIE~ARAaV~Rve~al 203 (457)
..++++++.+++.+..++..+
T Consensus 213 ~~~~~~l~~~~~~l~~~~~~~ 233 (423)
T TIGR01843 213 GRLEAELEVLKRQIDELQLER 233 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333
No 17
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=77.00 E-value=54 Score=36.07 Aligned_cols=130 Identities=23% Similarity=0.371 Sum_probs=66.8
Q ss_pred cchhHHHHHHHHHHHH-hhhhcc----CCccc-----cc-chHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhccccCcce
Q 012725 214 KTQDVERLVDEIQEAR-RIKRLH----QPSKV-----MD-MEHELHALRTQIREKSVLSLKIQKELAMNKRAEENKSCLY 282 (457)
Q Consensus 214 ~kqd~e~L~~EVqEAR-RIKmLH----~PSKv-----MD-ME~El~~LR~ql~EKs~~~v~L~KEL~~~kr~een~~~~y 282 (457)
.++.++.|++|.++-| ||+-|. .|..+ |+ ++.|+..|+.++..+-...-+| ||+=..|..+- .-..|
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RL-kevf~~ks~eF-r~av~ 641 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRL-KEVFKAKSQEF-REAVY 641 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHHHH
Confidence 3569999999988876 454443 34332 33 5789999999999887666665 45433332221 11334
Q ss_pred eecccccccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecccccccccCCCCcccceeeeeeecCCcEEEEEecC
Q 012725 283 VFDGSEALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISGASKLAYAPEPLDVGRVLQADILSNGQKITVTSAG 362 (457)
Q Consensus 283 eLeG~e~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~~G~k~~~~T~G 362 (457)
.| ||--+-+.|.+ =|||. |+|||.|-| +|-.|...++--..+ .|
T Consensus 642 ~l-----lGyki~~~~~~------------~~rl~--------------S~ya~~~~~---~l~f~~~~~~~~~~~--~~ 685 (722)
T PF05557_consen 642 SL-----LGYKIDFMPNG------------RVRLT--------------SMYAESPDD---YLIFDLESGTGSMKL--LE 685 (722)
T ss_dssp HH-----HSEEEEEETTT------------EEEEE--------------ETT-SSTT-----EEEEEE-----EEE--E-
T ss_pred HH-----hcceeeecCCC------------eEEEE--------------ecccCCCCC---eEEEeecCCCcccee--CC
Confidence 43 44444443332 26665 589999987 677777644321222 22
Q ss_pred CCCCCCCchhHHHHHhhcCC
Q 012725 363 PIESAAGLGSYVETLLRKSS 382 (457)
Q Consensus 363 PidpAaGL~~yVEaL~rk~~ 382 (457)
- +-++-+.+-|+.-|+..+
T Consensus 686 ~-~~~~~~~~~i~~~v~~~~ 704 (722)
T PF05557_consen 686 S-EFSPELEDLIEFWVEERN 704 (722)
T ss_dssp --CCHHCTHHHHHHHTTTS-
T ss_pred C-chHHHHHHHHHHHHHcCC
Confidence 1 223457777776665543
No 18
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=74.55 E-value=84 Score=38.25 Aligned_cols=85 Identities=20% Similarity=0.173 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH-hhhhccCCcc-----cc-------cchHHHHHH
Q 012725 184 FACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR-RIKRLHQPSK-----VM-------DMEHELHAL 250 (457)
Q Consensus 184 ~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR-RIKmLH~PSK-----vM-------DME~El~~L 250 (457)
.|..+..+|.+..++.++.++.-....+ ..++=++.-++..+-|| |++||-+--+ +| |||-+...=
T Consensus 1644 ~a~~~a~sa~~~A~~a~q~~~~lq~~~~-~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~ 1722 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLEILQKYYE-LVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRN 1722 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455566666666666666653222111 11223444444555554 5666543221 11 344444444
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 012725 251 RTQIREKSVLSLKIQKELA 269 (457)
Q Consensus 251 R~ql~EKs~~~v~L~KEL~ 269 (457)
-++|.-|+.+.--|-|+|.
T Consensus 1723 ~~~L~~~~aeL~~Le~r~~ 1741 (1758)
T KOG0994|consen 1723 EQALEDKAAELAGLEKRVE 1741 (1758)
T ss_pred hHHHHHHHHHhhhHHHHHH
Confidence 4566667777777777775
No 19
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=74.50 E-value=1.5e+02 Score=33.02 Aligned_cols=6 Identities=17% Similarity=0.612 Sum_probs=2.3
Q ss_pred hhHHhh
Q 012725 77 DLASKF 82 (457)
Q Consensus 77 DLA~KF 82 (457)
+++.+|
T Consensus 208 e~~~~~ 213 (1164)
T TIGR02169 208 EKAERY 213 (1164)
T ss_pred HHHHHH
Confidence 334333
No 20
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=74.25 E-value=52 Score=28.61 Aligned_cols=48 Identities=17% Similarity=0.139 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHH
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEK 157 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK 157 (457)
..+|.+.++.+|+.=+.++.+ ++++|=..-+-..-.+.+-+..|.+-+
T Consensus 13 ~~~~~~pi~~~l~~R~~~I~~----~l~~A~~~~~ea~~~~~e~~~~l~~A~ 60 (147)
T TIGR01144 13 MKYVWPPLAKAIETRQKKIAD----GLASAERAKKEAALAQKKAQVILKEAK 60 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788889999887777654 344444443333333333343333333
No 21
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=73.27 E-value=60 Score=27.99 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHH
Q 012725 105 EGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFE 159 (457)
Q Consensus 105 er~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~E 159 (457)
=+++|.+.|.+.|+.=+.++. +++++|-..-+-....+.+-|..|-+-+.|
T Consensus 22 l~~~l~~pi~~~l~~R~~~I~----~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~e 72 (140)
T PRK07353 22 LNALFYKPVGKVVEEREDYIR----TNRAEAKERLAEAEKLEAQYEQQLASARKQ 72 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888887666654 345555555444444444444444444333
No 22
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=73.03 E-value=60 Score=29.11 Aligned_cols=87 Identities=30% Similarity=0.349 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------
Q 012725 135 AISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEE------- 207 (457)
Q Consensus 135 aismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe------- 207 (457)
++++||-|.-++-++|+|+.+=|.++..|..-=+.|++.-=++. .+.|..++.+.++...-.+..
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~--------~~~e~~~~~~~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLM--------EENEELRALKKEVEELEQELEELQQRYQ 85 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999877666666554443 334444444443333222221
Q ss_pred hcCCCC--cchhHHHHHHHHHHHH
Q 012725 208 KNSPKS--KTQDVERLVDEIQEAR 229 (457)
Q Consensus 208 ~~s~~s--~kqd~e~L~~EVqEAR 229 (457)
...+-- ..+++|+|+-.|++-+
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK 109 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLK 109 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHH
Confidence 122222 2247788877776644
No 23
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=70.80 E-value=85 Score=36.80 Aligned_cols=61 Identities=20% Similarity=0.228 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHH
Q 012725 133 EKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESAR 193 (457)
Q Consensus 133 eeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~AR 193 (457)
+++-..+.-...++.|.+..+.+-+.+-..+-.-++++-+.++.-++++-..+..++....
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~ 698 (1201)
T PF12128_consen 638 EELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEELKQLK 698 (1201)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443333333333333334444444333333333333333333
No 24
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.15 E-value=40 Score=32.49 Aligned_cols=90 Identities=17% Similarity=0.351 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhhHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhc
Q 012725 158 FEVKKLANFLKQASEDAKKLVN---QEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRL 234 (457)
Q Consensus 158 ~EVkKlA~~lKqASeDAkkiV~---eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmL 234 (457)
.++..+-..+...-.++++.|+ .|++....++.+++..+..+..-+++....-... ..++..|++++.++...+
T Consensus 43 ~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~l-e~el~~lrk~ld~~~~~r-- 119 (312)
T PF00038_consen 43 EEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDL-EEELESLRKDLDEETLAR-- 119 (312)
T ss_dssp ---HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--
T ss_pred ccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhH--
Confidence 4445566666666677777765 4677777778888888888777776653332222 226677777777666554
Q ss_pred cCCcccccchHHHHHHHHHHHH
Q 012725 235 HQPSKVMDMEHELHALRTQIRE 256 (457)
Q Consensus 235 H~PSKvMDME~El~~LR~ql~E 256 (457)
+|+|.+|..|...|.-
T Consensus 120 ------~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 120 ------VDLENQIQSLKEELEF 135 (312)
T ss_dssp ------HHHHHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHH
Confidence 4778888877777654
No 25
>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G. This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.
Probab=69.84 E-value=78 Score=28.31 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=51.2
Q ss_pred HhhHHHHHHHHHhh-----------hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCC
Q 012725 169 QASEDAKKLVNQEK-----------SFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQP 237 (457)
Q Consensus 169 qASeDAkkiV~eER-----------a~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~P 237 (457)
.|-.+|.+||.+.| ..|..||+.=|+- -++-|+..+.....+.....++|.+|.++
T Consensus 13 ~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~---kE~ef~~~ea~~~g~~~~~~~~l~~et~~---------- 79 (113)
T TIGR01147 13 QAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQ---REKEFKEFEAKHLGGNGAAEEKAEAETQA---------- 79 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCCcchHHHHHHHHHHH----------
Confidence 47777777777666 4567777776653 34455554444333444466777777654
Q ss_pred cccccchHHHHHHHHHHHHHhHHHHHHHHH
Q 012725 238 SKVMDMEHELHALRTQIREKSVLSLKIQKE 267 (457)
Q Consensus 238 SKvMDME~El~~LR~ql~EKs~~~v~L~KE 267 (457)
+|..|...+..+...+|.+.=.
T Consensus 80 --------ki~~ik~~~~~~~~~Vv~~Ll~ 101 (113)
T TIGR01147 80 --------KIREIKKAVQKNKDAVIKDLLH 101 (113)
T ss_pred --------HHHHHHHHHHHhHHHHHHHHHH
Confidence 6888888888888888876543
No 26
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=69.33 E-value=86 Score=28.13 Aligned_cols=49 Identities=20% Similarity=0.217 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHH
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKF 158 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~ 158 (457)
+..|.+.+..+|+.=+.++.+ ++++|-..-+-....+.+-|..|.+-+.
T Consensus 40 ~k~l~~Pi~~~l~~R~~~I~~----~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ 88 (156)
T CHL00118 40 NIILYKPLLKVLDERKEYIRK----NLTKASEILAKANELTKQYEQELSKARK 88 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567778888888876655542 3444433333333333333444433333
No 27
>PF14443 DBC1: DBC1
Probab=68.66 E-value=1.8 Score=39.38 Aligned_cols=15 Identities=53% Similarity=1.143 Sum_probs=12.7
Q ss_pred CCCCCCCceeeEEEee
Q 012725 302 TAPSLSKCSIQWYRVS 317 (457)
Q Consensus 302 ~~~dlSkcsiQWyRv~ 317 (457)
..+|||+|+ ||||+.
T Consensus 54 tgiDLS~Ct-~W~rf~ 68 (126)
T PF14443_consen 54 TGIDLSNCT-QWYRFA 68 (126)
T ss_pred hccchhhcC-ccceee
Confidence 358999998 999976
No 28
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=68.64 E-value=1.9e+02 Score=31.90 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=16.8
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 012725 243 MEHELHALRTQIREKSVLSLKIQKELAM 270 (457)
Q Consensus 243 ME~El~~LR~ql~EKs~~~v~L~KEL~~ 270 (457)
++.++..|..++.........+++++..
T Consensus 864 ~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 891 (1179)
T TIGR02168 864 LEELIEELESELEALLNERASLEEALAL 891 (1179)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666655566666666653
No 29
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=68.05 E-value=28 Score=37.99 Aligned_cols=82 Identities=16% Similarity=0.349 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHH
Q 012725 172 EDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALR 251 (457)
Q Consensus 172 eDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR 251 (457)
.|++.|++.+.=....++|.+++.+-..++.+..--.... .+++++++++-|.+.+- +-+--|...--+.-|+..|+
T Consensus 149 p~~~eil~~~~L~T~~~~~~~~~~~k~~~~~w~~~~~~Lp--~~~~~~~yk~~v~~i~~-~~ik~p~~i~~~~~e~d~lk 225 (555)
T TIGR03545 149 PDPRALLKGEDLKTVETAEEIEKSLKAMQQKWKKRKKDLP--NKQDLEEYKKRLEAIKK-KDIKNPLELQKIKEEFDKLK 225 (555)
T ss_pred CCHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHH
Confidence 3556666666666666666666666666655555444443 35566666555554433 22334444444444555444
Q ss_pred HHHHH
Q 012725 252 TQIRE 256 (457)
Q Consensus 252 ~ql~E 256 (457)
.++..
T Consensus 226 ~e~~~ 230 (555)
T TIGR03545 226 KEGKA 230 (555)
T ss_pred HHHHH
Confidence 44433
No 30
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=68.02 E-value=72 Score=26.74 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV~R 198 (457)
|.+|-.+|..||++.|...-.=+..|+.-...
T Consensus 9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ 40 (105)
T PF03179_consen 9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEK 40 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777766665555555555443
No 31
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.27 E-value=3.5e+02 Score=34.42 Aligned_cols=150 Identities=23% Similarity=0.314 Sum_probs=99.6
Q ss_pred HHHHHhhcccCCC---ChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHH---------------
Q 012725 115 DALEALRGRMAGR---TKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKK--------------- 176 (457)
Q Consensus 115 d~LesLrGRvaGr---nKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk--------------- 176 (457)
+.||..+.|+.|- .--|++..-+.++.|..++-+-+.-|.+.|....+++.-+.+|..+++.
T Consensus 1403 ~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~ 1482 (1930)
T KOG0161|consen 1403 ASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEEL 1482 (1930)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4455555554432 2347777888899999999999999999998888888888776655432
Q ss_pred -----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch--hHHHHHHHHHHHHhhhhccCCcccccchHHHHH
Q 012725 177 -----LVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQ--DVERLVDEIQEARRIKRLHQPSKVMDMEHELHA 249 (457)
Q Consensus 177 -----iV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kq--d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~ 249 (457)
-++.+...+..||+.+--.+.-.+..++|-++.....+.+ |+..--+|...+.+ |+-++.+--+-+..+
T Consensus 1483 ~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le----~eE~~~lr~~~~~~~ 1558 (1930)
T KOG0161|consen 1483 LEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALE----AEEDKKLRLQLELQQ 1558 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHH
Confidence 2345667788888888888888888888888887666553 33333333333322 345555555556666
Q ss_pred HHHH----HHHHhHHHHHHHHHH
Q 012725 250 LRTQ----IREKSVLSLKIQKEL 268 (457)
Q Consensus 250 LR~q----l~EKs~~~v~L~KEL 268 (457)
+|.+ |++|-.++.+++|.+
T Consensus 1559 ~r~e~er~l~ek~Ee~E~~rk~~ 1581 (1930)
T KOG0161|consen 1559 LRSEIERRLQEKDEEIEELRKNL 1581 (1930)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 6665 455555555555554
No 32
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.01 E-value=48 Score=33.31 Aligned_cols=91 Identities=23% Similarity=0.296 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHH---HHHHHHhhhhhH---HH----HHHHHHHHHHHHH
Q 012725 132 VEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDA---KKLVNQEKSFAC---AE----IESARAVVQRFGE 201 (457)
Q Consensus 132 VeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDA---kkiV~eERa~A~---aE----IE~ARAaV~Rve~ 201 (457)
+.++=.-|+.|-.+|++.+-+|.+.+.|+.++-.-+..-+++| ++++.++...+. .| =+.|.+.+..++-
T Consensus 10 L~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~~a~P 89 (344)
T PF12777_consen 10 LKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELAEAEP 89 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888999999988888888888888777665433322 334443332221 11 2345566677777
Q ss_pred HHHHHHhcCCCCcchhHHHHH
Q 012725 202 ALEEEEKNSPKSKTQDVERLV 222 (457)
Q Consensus 202 aleEqe~~s~~s~kqd~e~L~ 222 (457)
+|++-....+.-.+.|+.+|+
T Consensus 90 ~L~~A~~al~~l~k~di~Eik 110 (344)
T PF12777_consen 90 ALEEAQEALKSLDKSDISEIK 110 (344)
T ss_dssp HHHHHHHHHHCS-HHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHH
Confidence 888888777777788887754
No 33
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=65.80 E-value=1e+02 Score=29.25 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=12.4
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 012725 106 GHVLLKKLRDALEALRGRM 124 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRv 124 (457)
..+|-|.++++|+.=+-.+
T Consensus 66 ~k~l~kPi~~~L~~R~~~I 84 (205)
T PRK06231 66 IFLFWKPTQRFLNKRKELI 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4556677788877655544
No 34
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=65.54 E-value=1.1e+02 Score=31.73 Aligned_cols=128 Identities=30% Similarity=0.387 Sum_probs=89.3
Q ss_pred hhHHHHHHHH-HHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012725 129 KEDVEKAISL-VEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEE 207 (457)
Q Consensus 129 KddVeeaism-VEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe 207 (457)
-||+..+|-+ -|+|.--..|-=|+|--=|+|-+.|-+=|..= .+-|.--.+||||-|+ |+-.|+.+|+
T Consensus 40 n~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~E--------Kq~kerLEtEiES~rs---RLaaAi~d~d 108 (305)
T PF14915_consen 40 NDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKE--------KQNKERLETEIESYRS---RLAAAIQDHD 108 (305)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHh--------HHHHHHHHHHHHHHHH---HHHHHHhhHH
Confidence 3677888887 46777777778888888888888888766432 2234445689999886 7788898888
Q ss_pred hcCCCCcchhHHH-HHHHHHHHH---------------hhhhccCC-----cccccchHHHHHHHHHHHHHhHHHHHHHH
Q 012725 208 KNSPKSKTQDVER-LVDEIQEAR---------------RIKRLHQP-----SKVMDMEHELHALRTQIREKSVLSLKIQK 266 (457)
Q Consensus 208 ~~s~~s~kqd~e~-L~~EVqEAR---------------RIKmLH~P-----SKvMDME~El~~LR~ql~EKs~~~v~L~K 266 (457)
++ +.| +.|++- +..+..|-= ...+|+|+ ||+=.+|.|++-.|+.|+||+...-.+|+
T Consensus 109 qs-q~s-krdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~Qr 186 (305)
T PF14915_consen 109 QS-QTS-KRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQR 186 (305)
T ss_pred HH-Hhh-HHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 74 222 224332 122222111 13567765 67888999999999999999998888888
Q ss_pred HHH
Q 012725 267 ELA 269 (457)
Q Consensus 267 EL~ 269 (457)
+|.
T Consensus 187 dL~ 189 (305)
T PF14915_consen 187 DLS 189 (305)
T ss_pred HHH
Confidence 775
No 35
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=64.67 E-value=1e+02 Score=30.68 Aligned_cols=39 Identities=26% Similarity=0.496 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHhhhhcc-CCcccccchHHHHHHHHHHHHH
Q 012725 217 DVERLVDEIQEARRIKRLH-QPSKVMDMEHELHALRTQIREK 257 (457)
Q Consensus 217 d~e~L~~EVqEARRIKmLH-~PSKvMDME~El~~LR~ql~EK 257 (457)
++.++.-+..+.|.. +-- +| .|...+.+|.+|+.||.+-
T Consensus 222 ~l~~~~~~l~~l~~~-~~~~~P-~v~~l~~~i~~l~~~i~~e 261 (362)
T TIGR01010 222 ELIRVQAQLAQLRSI-TPEQNP-QVPSLQARIKSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHHHHHhh-CCCCCC-chHHHHHHHHHHHHHHHHH
Confidence 334444444444432 222 33 5778889999999998763
No 36
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.03 E-value=1.2e+02 Score=28.45 Aligned_cols=13 Identities=23% Similarity=0.532 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHH
Q 012725 217 DVERLVDEIQEAR 229 (457)
Q Consensus 217 d~e~L~~EVqEAR 229 (457)
.++++++.++..|
T Consensus 92 ~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 92 RLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 37
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.20 E-value=4.2e+02 Score=33.83 Aligned_cols=140 Identities=23% Similarity=0.303 Sum_probs=80.0
Q ss_pred HHHHHHHHhhcccCCCC---hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHH----------H
Q 012725 112 KLRDALEALRGRMAGRT---KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKL----------V 178 (457)
Q Consensus 112 kLRd~LesLrGRvaGrn---KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkki----------V 178 (457)
+.|--+|..+-.+.|.. .+.+++.=..++-|..||..+|.||-+-..++....+.+.|+..-.+.+ .
T Consensus 1034 ~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~l 1113 (1930)
T KOG0161|consen 1034 RIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEEL 1113 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444443333333433 4566667778999999999999999988887776655544443332222 2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC-CCC-cchhHHH-HHHHHHHHHhhhhccCCcccccchHHHHHHHHHHH
Q 012725 179 NQEKSFACAEIESARAVVQRFGEALEEEEKNS-PKS-KTQDVER-LVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIR 255 (457)
Q Consensus 179 ~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s-~~s-~kqd~e~-L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~ 255 (457)
+.|| +++++.|.+|+...+-=++|++.-... ..+ .++++.. .-.|+++.||.- --..++.|..+..||+..+
T Consensus 1114 e~er-~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~l----eee~~~~e~~~~~lr~~~~ 1188 (1930)
T KOG0161|consen 1114 EAER-ASRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDL----EEETLDHEAQIEELRKKHA 1188 (1930)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHH
Confidence 2333 567777777776665555554433222 111 1112222 223566666542 1356778888888886544
Q ss_pred H
Q 012725 256 E 256 (457)
Q Consensus 256 E 256 (457)
.
T Consensus 1189 ~ 1189 (1930)
T KOG0161|consen 1189 D 1189 (1930)
T ss_pred H
Confidence 3
No 38
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=61.00 E-value=50 Score=34.91 Aligned_cols=76 Identities=20% Similarity=0.277 Sum_probs=53.5
Q ss_pred HHHhhhhhcchhhhhhHHHHHHHHHHH-HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Q 012725 140 EALAVKLTQNEGELIQEKFEVKKLANF-LKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQ 216 (457)
Q Consensus 140 EaLavqltqrE~ELiQeK~EVkKlA~~-lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kq 216 (457)
+|+.-+.+.+|.+- +...|-..-|+- +-.|--+|.+|+.+..+.+.+.|..|++=+.|+.+.|.|-.+........
T Consensus 249 ~Af~~v~~Are~~~-~~i~eAeayan~iip~A~gea~~ii~~AeAyr~~~i~~AeGda~rF~~i~~~Y~kaP~vtr~R 325 (419)
T PRK10930 249 AAFDDAIAARENEQ-QYIREAEAYTNEVQPRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRER 325 (419)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCHHHHHHH
Confidence 33444444454433 344454444443 34788899999999999999999999999999999998877766555444
No 39
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=59.68 E-value=1.4e+02 Score=27.85 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHH
Q 012725 108 VLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACA 187 (457)
Q Consensus 108 vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~a 187 (457)
.+-|.|...|+.=.-++. +++++|=..=+-++..+.+.|..|-+-+.|-.. .+++|-++|.++.++.+..|+.
T Consensus 24 fawkPI~~~LeeR~~~I~----~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~---Ii~~A~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 24 PAKKAILNSLDAKILEVQ----EKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ---MIEESNEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666665544442 455555555444444445555554444433333 4555555555555555555555
Q ss_pred HHHHH
Q 012725 188 EIESA 192 (457)
Q Consensus 188 EIE~A 192 (457)
|++..
T Consensus 97 ea~r~ 101 (154)
T PRK06568 97 FLEHK 101 (154)
T ss_pred HHHHH
Confidence 54443
No 40
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=58.98 E-value=1.3e+02 Score=26.45 Aligned_cols=75 Identities=21% Similarity=0.308 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhH
Q 012725 107 HVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFAC 186 (457)
Q Consensus 107 ~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 186 (457)
..+.|.+.++|+.=+.++. +++++|-..-+.....+.+-|..|.+-+.|... .+..|-.+|.++.++.+..|+
T Consensus 23 ~~~~~pi~~~l~~R~~~I~----~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~---i~~~a~~ea~~~~~~~~~~a~ 95 (156)
T PRK05759 23 KFVWPPIMKALEERQKKIA----DGLAAAERAKKELELAQAKYEAQLAEARAEAAE---IIEQAKKRAAQIIEEAKAEAE 95 (156)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888877665553 455555555555555555555555555544433 334444555555444444444
Q ss_pred HH
Q 012725 187 AE 188 (457)
Q Consensus 187 aE 188 (457)
.|
T Consensus 96 ~e 97 (156)
T PRK05759 96 AE 97 (156)
T ss_pred HH
Confidence 43
No 41
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=57.95 E-value=47 Score=30.44 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=21.6
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHH
Q 012725 212 KSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREK 257 (457)
Q Consensus 212 ~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EK 257 (457)
...++|+++|++|+.. -|.|+.+|+.|...-
T Consensus 157 ~~~~~ei~~lk~el~~---------------~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK---------------KEKEIEALKKQSEGL 187 (192)
T ss_pred hhhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH
Confidence 3445678888888877 567777888776543
No 42
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=56.77 E-value=1.5e+02 Score=26.58 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=27.1
Q ss_pred hhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHH
Q 012725 105 EGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEK 157 (457)
Q Consensus 105 er~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK 157 (457)
=+.+|.|.+.++|+.=+.++. +++++|=..-+-..-.+.+-|..|.+-+
T Consensus 25 L~~fl~kpi~~~l~~R~~~I~----~~l~~Ae~~~~ea~~~~~e~e~~l~~A~ 73 (164)
T PRK14473 25 LRTFLYRPVLNLLNERTRRIE----ESLRDAEKVREQLANAKRDYEAELAKAR 73 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888766664 3455554444433333333333333333
No 43
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.26 E-value=2.4e+02 Score=31.09 Aligned_cols=58 Identities=28% Similarity=0.243 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHH
Q 012725 110 LKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQ 169 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKq 169 (457)
+|..+.......-.+. ||+++++.-.=|+++--.=-..-.++.|-|.|+.+|-+.+++
T Consensus 173 ~k~~~~~w~~~~~~Lp--~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 173 LKAMQQKWKKRKKDLP--NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred HHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555 577888777777777554334555777777788777776654
No 44
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=56.09 E-value=68 Score=29.14 Aligned_cols=46 Identities=20% Similarity=0.171 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhh
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQ 155 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQ 155 (457)
..++.|.+.++|+.=+-++.+ ++++|-..-+-..-.+.+-|..|.+
T Consensus 34 ~~~~~kpi~~~l~~R~~~I~~----~l~~Ae~~~~eA~~~~~e~e~~l~~ 79 (173)
T PRK13460 34 KKFAWDVILKALDERASGVQN----DINKASELRLEAEALLKDYEARLNS 79 (173)
T ss_pred HHHhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887666643 4444444333333333333433333
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=55.95 E-value=3.3e+02 Score=30.40 Aligned_cols=62 Identities=34% Similarity=0.501 Sum_probs=40.8
Q ss_pred hhHHhhhhchhHHHhhhHHHhhhhhhhchhhHHHHHHHHHHHHhhcccCCC---------ChhHHHHHHHHHHH
Q 012725 77 DLASKFDKNLTAAAKLADEAKLRDVASLEGHVLLKKLRDALEALRGRMAGR---------TKEDVEKAISLVEA 141 (457)
Q Consensus 77 DLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLRd~LesLrGRvaGr---------nKddVeeaismVEa 141 (457)
-|+..||.-+++|.++-+|+. ++.+.+|.. ++||++-++.|+.++.-. +.++....|+=+||
T Consensus 85 ~ik~~ye~El~~ar~~l~e~~-~~ra~~e~e--i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA 155 (546)
T KOG0977|consen 85 GIKAKYEAELATARKLLDETA-RERAKLEIE--ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA 155 (546)
T ss_pred chhHHhhhhHHHHHHHHHHHH-HHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh
Confidence 478899999999999999942 345555554 477777777776665432 34445555555554
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=55.12 E-value=4.3e+02 Score=31.46 Aligned_cols=100 Identities=12% Similarity=0.174 Sum_probs=52.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHH-------HHHHHHhhHHHHH---HHHHhhhhhHHHHHHHHHHHHH
Q 012725 129 KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKL-------ANFLKQASEDAKK---LVNQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 129 KddVeeaismVEaLavqltqrE~ELiQeK~EVkKl-------A~~lKqASeDAkk---iV~eERa~A~aEIE~ARAaV~R 198 (457)
+..+.+++....-|.-+|..-..++.+-..+++++ ...+..+...-.+ --+++-..++.++...+.-+..
T Consensus 873 klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 952 (1311)
T TIGR00606 873 KLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKN 952 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666666666665555555444 3333333333322 2233334455555555555666
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 012725 199 FGEALEEEEKNSPKSKTQDVERLVDEIQEA 228 (457)
Q Consensus 199 ve~aleEqe~~s~~s~kqd~e~L~~EVqEA 228 (457)
+..+..+-....+..+...++.+..++++.
T Consensus 953 ~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 953 IHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 655555555544444555566666666544
No 47
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=55.07 E-value=57 Score=26.70 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=32.6
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccce-----ecccccccccCCCCcccceeeeeeecCCcEEEE
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEI-----ISGASKLAYAPEPLDVGRVLQADILSNGQKITV 358 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~-----IsGAtk~~YAPEP~DVGr~LqadI~~~G~k~~~ 358 (457)
.|+-..|........ +.-.+.|||..+....+.+ ++......|.++. +-+|. .+.+..++...++
T Consensus 5 ~G~~vtL~C~~~~~~--~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~-~~~rf-~~~~~~~~~~~~L 74 (107)
T cd07700 5 TNNTVKLSCEAKGIS--ENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEV-SQEKF-SIRVTSDSSRYRL 74 (107)
T ss_pred CCCCEEEEEEEecCC--CCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEcccc-ccCcE-EEEEECCCCEEEE
Confidence 466666665433221 2338999999885322321 2344445666553 44553 3333444443333
No 48
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=55.02 E-value=1.7e+02 Score=26.67 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV~R 198 (457)
|.+|-..|+.|+++.+..|..+.+..++...+
T Consensus 77 l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ 108 (173)
T PRK13460 77 LNSAKDEANAIVAEAKSDALKLKNKLLEETNN 108 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666666655544433
No 49
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.89 E-value=3.1e+02 Score=32.56 Aligned_cols=36 Identities=17% Similarity=0.130 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhh
Q 012725 110 LKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVK 145 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGrnKddVeeaismVEaLavq 145 (457)
-+.|.+....+.+.-..++.+++++-|.-++.---.
T Consensus 805 ~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~ 840 (1311)
T TIGR00606 805 ERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDT 840 (1311)
T ss_pred HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHH
Confidence 344444444444444446778888877765544333
No 50
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=54.57 E-value=70 Score=26.35 Aligned_cols=48 Identities=15% Similarity=0.221 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012725 160 VKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEE 207 (457)
Q Consensus 160 VkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe 207 (457)
+..+..+++.+++++...+++.|..+..-++.+|..+......+.++.
T Consensus 11 ~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~ 58 (94)
T PF05957_consen 11 RADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQA 58 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888889999999999999999999999988887777766654
No 51
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=53.84 E-value=3.6e+02 Score=32.53 Aligned_cols=168 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred hhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhh--------hhhcchhhhhhHHHHHHHHHHHHHH
Q 012725 98 LRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAV--------KLTQNEGELIQEKFEVKKLANFLKQ 169 (457)
Q Consensus 98 ~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLav--------qltqrE~ELiQeK~EVkKlA~~lKq 169 (457)
+++...=+.+..+..|.+.++.|.- ...+-+++++++..++.+.. .+.++=.+++..+.+...+..-+..
T Consensus 210 l~~~l~~l~~~~i~~l~e~~~~~~~--~~~~le~l~~~~~~l~~i~~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (1353)
T TIGR02680 210 LTEALPPLDDDELTDVADALEQLDE--YRDELERLEALERALRNFLQRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGR 287 (1353)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHH
Q 012725 170 ASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHA 249 (457)
Q Consensus 170 ASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~ 249 (457)
+..+- .-..++...+..+++....-....++-+++-..+.--...+++++++.++.+...-.. ..+.+....+.-+..
T Consensus 288 ~~~~~-~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~-~~~~~~~~a~~~~e~ 365 (1353)
T TIGR02680 288 ARDEL-ETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAA-DARQAIREAESRLEE 365 (1353)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 012725 250 LRTQIREKSVLSLKIQKELA 269 (457)
Q Consensus 250 LR~ql~EKs~~~v~L~KEL~ 269 (457)
+|..+.+-....-.+.+++.
T Consensus 366 ~~~~~~~~~~r~~~~~~~l~ 385 (1353)
T TIGR02680 366 ERRRLDEEAGRLDDAERELR 385 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 52
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=53.15 E-value=1.7e+02 Score=26.11 Aligned_cols=13 Identities=23% Similarity=0.417 Sum_probs=7.1
Q ss_pred HHHHHHHhhcccC
Q 012725 113 LRDALEALRGRMA 125 (457)
Q Consensus 113 LRd~LesLrGRva 125 (457)
|.++|+.=+.++.
T Consensus 27 i~~~l~~R~~~I~ 39 (159)
T PRK09173 27 IARSLDARADRIK 39 (159)
T ss_pred HHHHHHHHHHHHH
Confidence 5666665554443
No 53
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=52.90 E-value=1.7e+02 Score=30.53 Aligned_cols=77 Identities=19% Similarity=0.220 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHH-HHHHhhHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 012725 131 DVEKAISLVEALAVKLTQNEGELIQEKFEVKKLAN-FLKQASEDAKKLVNQE--KSFACAEIESARAVVQRFGEALEEEE 207 (457)
Q Consensus 131 dVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~-~lKqASeDAkkiV~eE--Ra~A~aEIE~ARAaV~Rve~aleEqe 207 (457)
.++.|-+-+.+.-.++-.-+.++.+.++.+.+-.. -|++|..|..|...=. ....+.|++.|+++++..+..+.-..
T Consensus 92 al~qAea~la~a~~~~~~~~a~~~~~~A~i~~a~a~~l~~a~~~~~R~~~L~~~g~vs~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEAQDLDQAQNELERRAELAQRGVVSREELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444445555555555556666666666666 5888888988876655 34448888888888887777775443
No 54
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=52.51 E-value=2.1e+02 Score=33.00 Aligned_cols=146 Identities=26% Similarity=0.399 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHH
Q 012725 109 LLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAE 188 (457)
Q Consensus 109 LLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aE 188 (457)
..=.||.++.-|. .+++-+++.++....=.||+.+ .+|.|..-...++..-.-|++|-++ --...|
T Consensus 428 ~yL~Lr~a~~rL~---~~~~~~~~~~v~~~LW~lAl~i--EdG~ls~A~~~Lr~AQe~L~eAL~~---------gAs~eE 493 (820)
T PF13779_consen 428 HYLGLRSARRRLE---RARTDEALREVADLLWDLALRI--EDGDLSDAERRLRAAQEALREALER---------GASDEE 493 (820)
T ss_pred HHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHHh--hcCcHHHHHHHHHHHHHHHHHHHHc---------CCCHHH
Confidence 3346888888887 6799999999998888888877 5788887777777777777776553 123455
Q ss_pred HH----HHHHHHHHHHHHHHHHHhcCC-------------CCcchhHHHHHHHHHHHHhh-------hhccCCccccc--
Q 012725 189 IE----SARAVVQRFGEALEEEEKNSP-------------KSKTQDVERLVDEIQEARRI-------KRLHQPSKVMD-- 242 (457)
Q Consensus 189 IE----~ARAaV~Rve~aleEqe~~s~-------------~s~kqd~e~L~~EVqEARRI-------KmLH~PSKvMD-- 242 (457)
|+ .-|.|+++.=++|.|+..... ....+|++.|++.|||.-|- .||.+=...|+
T Consensus 494 I~rLm~eLR~A~~~ym~~LAeq~~~~~~~~~~p~~~~~~~~~~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenm 573 (820)
T PF13779_consen 494 IARLMQELREAMQDYMQALAEQAQRNPQQQDQPPDQGNSQMMSQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENM 573 (820)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhCcccccCcccchhhhccCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Confidence 54 468888888888887765432 22467999999999986543 45554444433
Q ss_pred ------------chHHHHHHHHHHHHHhHHHHHHHHHH
Q 012725 243 ------------MEHELHALRTQIREKSVLSLKIQKEL 268 (457)
Q Consensus 243 ------------ME~El~~LR~ql~EKs~~~v~L~KEL 268 (457)
|..-++.|.+.+++-...+-+-.+.+
T Consensus 574 q~~~~q~~~~~~~~q~m~~L~dl~r~Qq~L~D~tfr~~ 611 (820)
T PF13779_consen 574 QNAQPQQQQQQEMQQAMEELGDLLRRQQQLMDETFRQL 611 (820)
T ss_pred cccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666555444444444
No 55
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=52.41 E-value=92 Score=32.83 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=9.9
Q ss_pred hhHHHHHHHHHHHHhh
Q 012725 106 GHVLLKKLRDALEALR 121 (457)
Q Consensus 106 r~vLLKkLRd~LesLr 121 (457)
..++.|.+..+|+.=+
T Consensus 19 ~kfl~~Pi~~~l~~R~ 34 (445)
T PRK13428 19 WRFVVPPVRRLMAARQ 34 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456667777776543
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=52.38 E-value=1.1e+02 Score=29.63 Aligned_cols=145 Identities=18% Similarity=0.239 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhcccCC-------CChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 012725 111 KKLRDALEALRGRMAG-------RTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKS 183 (457)
Q Consensus 111 KkLRd~LesLrGRvaG-------rnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa 183 (457)
++|..-|..++++... ....++.++-..|+.+...-++-+.++-.-+.++..+=.-+... -..++-++.+=.
T Consensus 28 ~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e-~~~~~~le~el~ 106 (312)
T PF00038_consen 28 KRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEE-LAERKDLEEELE 106 (312)
T ss_dssp HHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHh
Confidence 4566666667766422 23345555556777777666665555544444443332222111 112223333333
Q ss_pred hhHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHh
Q 012725 184 FACAEIESARAVVQRFG---EALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKS 258 (457)
Q Consensus 184 ~A~aEIE~ARAaV~Rve---~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs 258 (457)
..+.+++.+..+-..++ +.|++.=.+......+++.+|+..++...=+.+=+ ..-.||..-|+.+|.++....
T Consensus 107 ~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~--~~~~dL~~~L~eiR~~ye~~~ 182 (312)
T PF00038_consen 107 SLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQSSVTVEVDQ--FRSSDLSAALREIRAQYEEIA 182 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceeecc--cccccchhhhhhHHHHHHHHH
Confidence 33444444444333332 23444444444455556666666554111111111 113467777888887765443
No 57
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=52.11 E-value=1.4e+02 Score=28.66 Aligned_cols=72 Identities=18% Similarity=0.117 Sum_probs=55.6
Q ss_pred hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 129 KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 129 KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
.++|.+|+.-+ +-.++|.+-...++|-.+.+ .+..|-.+|.+.+.+..+.|.+-+..|++-+.++...+++-
T Consensus 142 p~~v~~A~~~~-----~~A~~~~~a~~~~Aea~~~~-~i~~A~~ea~a~~~~Aeg~a~a~~~~A~g~~~~~~~~~~~~ 213 (262)
T cd03407 142 DAEVKRAMNEI-----NAAQRQRVAAVHKAEAEKIK-DIKAAEADAEAKRLQGVGAAEQRQAIADGLRESILSLADAV 213 (262)
T ss_pred CHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677776653 23455666666667766664 47889999999999999999999999999999999888764
No 58
>PRK00106 hypothetical protein; Provisional
Probab=50.80 E-value=3e+02 Score=30.42 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=30.9
Q ss_pred ecCCCCCCCCchhHHHHHhhcCCCeeeEEEEeecCCcCC----CCcc---eeeeecceeeEeeccc
Q 012725 360 SAGPIESAAGLGSYVETLLRKSSSEFNVVISQMNGQDYS----SHSN---HCFNVGKLRIKLCRGW 418 (457)
Q Consensus 360 T~GPidpAaGL~~yVEaL~rk~~tEFNVvi~Q~NG~d~~----s~s~---hvl~igklRiKL~KG~ 418 (457)
.+|-|.|+ ..|..+.|...||+-.|... |++.. ...+ -+..+|+|+-|-..|.
T Consensus 290 ~dgrIhp~-----rIEe~v~k~~~e~~~~i~~~-Ge~a~~~lg~~~~~~e~~~~lg~l~~r~sy~q 349 (535)
T PRK00106 290 KDGRIHPA-----RIEELVEKNRLEMDNRIREY-GEAAAYEIGAPNLHPDLIKIMGRLQFRTSYGQ 349 (535)
T ss_pred HcCCcCHH-----HHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHhhhccCCC
Confidence 35667765 67888888888877655442 22211 1111 2445788887766653
No 59
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=50.67 E-value=1e+02 Score=28.90 Aligned_cols=75 Identities=9% Similarity=0.117 Sum_probs=51.1
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKS 183 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa 183 (457)
+=++++++++..+|+.=+.++.+ ++++|-.. +.|.+-+.+ ..-.-|+.|...|..|..+.|.
T Consensus 26 ll~kf~~ppI~~iLe~R~~~I~~----~L~~Ae~~---------k~eAe~l~a-----~ye~~L~~Ar~eA~~I~~e~~~ 87 (155)
T PRK06569 26 FVYKFITPKAEEIFNNRQTNIQD----NITQADTL---------TIEVEKLNK-----YYNEEIDKTNTEIDRLKKEKID 87 (155)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHh----HHHHHHHH---------HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999987766643 44444332 222222222 2234578899999999999999
Q ss_pred hhHHHHHHHHHHH
Q 012725 184 FACAEIESARAVV 196 (457)
Q Consensus 184 ~A~aEIE~ARAaV 196 (457)
.+.+|.+..|+++
T Consensus 88 ~~~a~~~~~~~~~ 100 (155)
T PRK06569 88 SLESEFLIKKKNL 100 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988888764
No 60
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.49 E-value=3.6e+02 Score=29.18 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=23.9
Q ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Q 012725 240 VMDMEHELHALRTQIREKSVLSLKIQKELAMNKRAE 275 (457)
Q Consensus 240 vMDME~El~~LR~ql~EKs~~~v~L~KEL~~~kr~e 275 (457)
-++|...|..||....+--...-++++.|...+|.-
T Consensus 399 q~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l 434 (569)
T PRK04778 399 QEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYL 434 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766666667777776555443
No 61
>PRK00106 hypothetical protein; Provisional
Probab=49.95 E-value=2.5e+02 Score=30.94 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=15.7
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
.++++|..+|++|.++.+..|.+++..++.
T Consensus 46 ~IleeAe~eAe~I~keA~~EAke~~ke~~l 75 (535)
T PRK00106 46 NLRGKAERDAEHIKKTAKRESKALKKELLL 75 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666665555555444444333
No 62
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=49.72 E-value=1.4e+02 Score=26.81 Aligned_cols=20 Identities=10% Similarity=0.139 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHhhcccC
Q 012725 106 GHVLLKKLRDALEALRGRMA 125 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRva 125 (457)
.+.|.|.+..+|+.=+.++.
T Consensus 26 ~~~l~~pi~~~l~~R~~~I~ 45 (164)
T PRK14471 26 AKFAWKPILGAVKEREDSIK 45 (164)
T ss_pred HHHhHHHHHHHHHHHHHHHH
Confidence 45677888888877665554
No 63
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=49.57 E-value=1.4e+02 Score=26.88 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIE 190 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE 190 (457)
|++|-..|+.|+++.+..|..+.+
T Consensus 83 L~~A~~ea~~ii~~A~~~a~~~~~ 106 (156)
T CHL00118 83 LSKARKEAQLEITQSQKEAKEIVE 106 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 64
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.56 E-value=1.9e+02 Score=31.78 Aligned_cols=77 Identities=23% Similarity=0.235 Sum_probs=40.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcchhHHHHHHH-------HHHHHhhhhccCCcccccc
Q 012725 179 NQEKSFACAEIESARAVVQRFGEALEEEEKNSP--------KSKTQDVERLVDE-------IQEARRIKRLHQPSKVMDM 243 (457)
Q Consensus 179 ~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~--------~s~kqd~e~L~~E-------VqEARRIKmLH~PSKvMDM 243 (457)
+.+.+.|+++...|++..+.++..++....... .....-+.+|+.+ +.+.+.. .-..=-.|.++
T Consensus 243 ~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~-y~~~hP~v~~l 321 (754)
T TIGR01005 243 NTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTT-MLANHPRVVAA 321 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHh-hCCCCHHHHHH
Confidence 455667777777777777777776654221110 0111233444433 3333332 22222347777
Q ss_pred hHHHHHHHHHHHH
Q 012725 244 EHELHALRTQIRE 256 (457)
Q Consensus 244 E~El~~LR~ql~E 256 (457)
+.+|..|+++|.+
T Consensus 322 ~~qi~~l~~~i~~ 334 (754)
T TIGR01005 322 KSSLADLDAQIRS 334 (754)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 65
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=49.21 E-value=3.9e+02 Score=30.76 Aligned_cols=133 Identities=23% Similarity=0.276 Sum_probs=0.0
Q ss_pred HHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH--------HHHHHHHHhcC
Q 012725 139 VEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRF--------GEALEEEEKNS 210 (457)
Q Consensus 139 VEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rv--------e~aleEqe~~s 210 (457)
+..|-..|.|-..++---++|.-.|.+....-.+|. ..++-+|..-+.||-.++.-=+|. ++-+--|.+.|
T Consensus 36 i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~-~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs 114 (717)
T PF09730_consen 36 ILELENELKQLRQELSNVQAENERLSQLNQELRKEC-EDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVS 114 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q ss_pred CCCcch-hHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHH---------------------HHHHHH
Q 012725 211 PKSKTQ-DVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSL---------------------KIQKEL 268 (457)
Q Consensus 211 ~~s~kq-d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v---------------------~L~KEL 268 (457)
.-...| +.|+|+-||.- ++.|+.-|+.|+.|-...-- .|+|||
T Consensus 115 ~Lk~sQvefE~~Khei~r---------------l~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL 179 (717)
T PF09730_consen 115 VLKQSQVEFEGLKHEIKR---------------LEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKEL 179 (717)
T ss_pred HHHHhHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhcc---ccCcceeeccc
Q 012725 269 AMNKRAEE---NKSCLYVFDGS 287 (457)
Q Consensus 269 ~~~kr~ee---n~~~~yeLeG~ 287 (457)
+-+...+. ..+-+|.|+|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~ 201 (717)
T PF09730_consen 180 DQHLNIESISYLSNLAISLDGL 201 (717)
T ss_pred HHhcCccccccccchhhccccc
No 66
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=48.96 E-value=1.5e+02 Score=25.97 Aligned_cols=31 Identities=32% Similarity=0.362 Sum_probs=17.6
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAV 195 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAa 195 (457)
.-|.+|...|..|+++.+..|..+.+..++.
T Consensus 63 ~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~ 93 (156)
T PRK05759 63 AQLAEARAEAAEIIEQAKKRAAQIIEEAKAE 93 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666655555444
No 67
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=48.89 E-value=1.5e+02 Score=26.45 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=18.1
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEIESARAVVQRF 199 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rv 199 (457)
-|..|...|..|+++.+..|...++.|+....+.
T Consensus 62 ~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~ 95 (159)
T PRK09173 62 KRKEAEKEAADIVAAAEREAEALTAEAKRKTEEY 95 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555444443
No 68
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=48.88 E-value=2.1e+02 Score=29.57 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=46.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHH
Q 012725 179 NQEKSFACAEIESARAVVQRFGEALEEEEKNSP-------KSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALR 251 (457)
Q Consensus 179 ~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~-------~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR 251 (457)
+++...+++++..+++....+...+........ ..-.+.+.++..+.++.+. +....-.+|+++..+|..|+
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~-~y~~~hP~v~~l~~qi~~l~ 288 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRL-RYTDKHPDVIATKREIAQLE 288 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHH
Confidence 444555666666666666666655543221111 1112346667777777664 33344468899999999999
Q ss_pred HHHHHH
Q 012725 252 TQIREK 257 (457)
Q Consensus 252 ~ql~EK 257 (457)
.++.+-
T Consensus 289 ~~l~~~ 294 (498)
T TIGR03007 289 EQKEEE 294 (498)
T ss_pred HHHHhh
Confidence 998553
No 69
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=48.78 E-value=1.4e+02 Score=27.04 Aligned_cols=31 Identities=23% Similarity=0.147 Sum_probs=18.7
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
-|..|...|..|+++.+..|..+.+.+.+..
T Consensus 79 ~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A 109 (174)
T PRK07352 79 KLAQAQQEAERIRADAKARAEAIRAEIEKQA 109 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666666655555433
No 70
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=48.75 E-value=1.5e+02 Score=28.31 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=21.8
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
.-|++|...|..|+++.|..|.++.+..++.+
T Consensus 112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a 143 (204)
T PRK09174 112 QELAQARAKAHSIAQAAREAAKAKAEAERAAI 143 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777777777777777777766665543
No 71
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=48.42 E-value=1.2e+02 Score=27.72 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFA 185 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 185 (457)
..++.+.+.++|+.=+.++. +++++|-..-+-....+.+-|. -|.+|-..|..|+++.+..|
T Consensus 36 ~~~l~~pi~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~e~e~--------------~l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 36 KKFAWGPLKDVMDKRERDIN----RDIDDAEQAKLNAQKLEEENKQ--------------KLKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Confidence 45667778888877555443 2333333332222222222222 24445555555555555555
Q ss_pred HHHHHHHHH
Q 012725 186 CAEIESARA 194 (457)
Q Consensus 186 ~aEIE~ARA 194 (457)
..+.+...+
T Consensus 98 ~~~~~~~~~ 106 (173)
T PRK13453 98 RQQQEQIIH 106 (173)
T ss_pred HHHHHHHHH
Confidence 554444433
No 72
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=46.94 E-value=1.7e+02 Score=24.37 Aligned_cols=97 Identities=29% Similarity=0.323 Sum_probs=47.4
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhh
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKS 183 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa 183 (457)
||-..+..+.-.+-++|+.|- ...++|++.+.+-+-.-- +.+.=.+|-.++-++.|--.-++.+.+|+..++.+-+.
T Consensus 2 LDik~ir~n~e~v~~~l~~R~--~~~~~vd~i~~ld~~~r~-l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~ 78 (108)
T PF02403_consen 2 LDIKLIRENPEEVRENLKKRG--GDEEDVDEIIELDQERRE-LQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKE 78 (108)
T ss_dssp -SHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHcC--CCHhhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 444445555555566666554 567888888877554422 22222233333333333333333344456555555443
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 012725 184 FACAEIESARAVVQRFGEALE 204 (457)
Q Consensus 184 ~A~aEIE~ARAaV~Rve~ale 204 (457)
-..+|....+.+..+++.+.
T Consensus 79 -lk~~i~~le~~~~~~e~~l~ 98 (108)
T PF02403_consen 79 -LKEEIKELEEQLKELEEELN 98 (108)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 23455555555555544443
No 73
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=46.86 E-value=1.2e+02 Score=29.64 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=11.4
Q ss_pred cCCcEEEEEecC-CCCCCCCchhHH
Q 012725 351 SNGQKITVTSAG-PIESAAGLGSYV 374 (457)
Q Consensus 351 ~~G~k~~~~T~G-PidpAaGL~~yV 374 (457)
.-|+.++|+..+ |-.+-.|-..++
T Consensus 255 ~~Gq~v~v~~~~~~~~~~~g~V~~I 279 (331)
T PRK03598 255 QPGRKVLLYTDGRPDKPYHGQIGFV 279 (331)
T ss_pred CCCCEEEEEEcCCCCcEEEEEEEEE
Confidence 345666665544 434444443333
No 74
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=46.85 E-value=2.3e+02 Score=25.88 Aligned_cols=42 Identities=26% Similarity=0.356 Sum_probs=22.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHH
Q 012725 149 NEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIES 191 (457)
Q Consensus 149 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ 191 (457)
++||.+|.++- +.+-.-...+++.++..++..+..|.....+
T Consensus 46 k~Ge~~e~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dk 87 (132)
T PF05597_consen 46 KEGEKLEKKTR-KKAEEQVEEARDQVKSRVDDVKERATGQWDK 87 (132)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776542 2222333344466667777666665555443
No 75
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=46.77 E-value=2.3e+02 Score=25.80 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHH
Q 012725 106 GHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEK 157 (457)
Q Consensus 106 r~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK 157 (457)
...+.|.+...|+.=+.++. +++++|-..-+-....+.+-|..|.+-+
T Consensus 36 ~~~l~kpi~~~l~~R~~~I~----~~l~~Ae~~~~eA~~~~~e~e~~L~~a~ 83 (175)
T PRK14472 36 KKIAWGPILSALEEREKGIQ----SSIDRAHSAKDEAEAILRKNRELLAKAD 83 (175)
T ss_pred HHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888877665553 3444444444444444444444444333
No 76
>PRK02224 chromosome segregation protein; Provisional
Probab=46.33 E-value=4.5e+02 Score=29.17 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhcccCCCChhHHHHH
Q 012725 109 LLKKLRDALEALRGRMAGRTKEDVEKA 135 (457)
Q Consensus 109 LLKkLRd~LesLrGRvaGrnKddVeea 135 (457)
+.+.++..++.+++.+.++...++...
T Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~~l~~~ 207 (880)
T PRK02224 181 VLSDQRGSLDQLKAQIEEKEEKDLHER 207 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777778887777544444333
No 77
>PRK09039 hypothetical protein; Validated
Probab=46.29 E-value=3.5e+02 Score=27.77 Aligned_cols=44 Identities=18% Similarity=0.282 Sum_probs=33.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 012725 184 FACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEA 228 (457)
Q Consensus 184 ~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEA 228 (457)
..+.||++-|+-..+++.+|...+... ..-+..++.|..+++.|
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~-~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRD-RESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 467899999999999999999888766 22223677777777666
No 78
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=45.65 E-value=2e+02 Score=28.33 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 012725 183 SFACAEIESARAVVQRF 199 (457)
Q Consensus 183 a~A~aEIE~ARAaV~Rv 199 (457)
+.++.+.+.|++.+..-
T Consensus 148 ~vS~~~~~~a~~~~~~a 164 (346)
T PRK10476 148 YVSAQQVDQARTAQRDA 164 (346)
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 44444444444444433
No 79
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=45.32 E-value=4.2e+02 Score=28.54 Aligned_cols=115 Identities=24% Similarity=0.259 Sum_probs=56.9
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHh
Q 012725 151 GELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARR 230 (457)
Q Consensus 151 ~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARR 230 (457)
.||-.+|.++..+=.-.+.|+--+ --.+.+-..++.+++.+++.--+......+.. ..++++..|..+||+
T Consensus 316 ~ELe~~K~el~~lke~e~~a~~~v-~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~--------~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 316 SELEKEKEELERLKEREKEASSEV-SSLEAELNKTRSELEAAKAEEEKAKEAMSELP--------KALQQLSSEAEEAKK 386 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-hhHHHHHHHHHHHHHHHHhhhcchhhhHHHHH--------HHHHHHHHHHHHHHH
Confidence 345555555555544444333333 22334444455555555554444333222221 244555555555543
Q ss_pred hhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Q 012725 231 IKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKELAMNKRAE 275 (457)
Q Consensus 231 IKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~~~kr~e 275 (457)
-.-. .-..+.-+..|++..+..+..--..+...+||+.-.|-.+
T Consensus 387 ea~~-~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasE 430 (522)
T PF05701_consen 387 EAEE-AKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASE 430 (522)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 0123344456677777777777777777788876555444
No 80
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=45.07 E-value=2.2e+02 Score=28.08 Aligned_cols=179 Identities=23% Similarity=0.282 Sum_probs=70.4
Q ss_pred chHHHHHHHHHhHHHhhcccchhhhHHhhhhchhHHHh--hhHHHhhhhhhhch-hhHHHHHHHHHHH-Hhh-cccC--C
Q 012725 54 SLKEVVEKETVQLSEQHKRLSVRDLASKFDKNLTAAAK--LADEAKLRDVASLE-GHVLLKKLRDALE-ALR-GRMA--G 126 (457)
Q Consensus 54 slKEvVakEta~L~~q~kRLSVRDLA~KFEKgl~~Aak--Ls~EaK~reva~Le-r~vLLKkLRd~Le-sLr-GRva--G 126 (457)
...+...+++-++-..+ |+.|.-.+|.+-|..... ..+=-+..+.+|.. =..+|.+|-.-|+ .|+ |-.+ |
T Consensus 72 ~~H~~~~~~A~~~F~~~---s~~d~~~~~~~~L~~~i~~~~~~~~~~N~~~s~~~C~~~l~~l~~~le~~l~~~~~~~~g 148 (297)
T PF02841_consen 72 ELHEQCEKEALEVFMKR---SFGDEDQKYQKKLMEQIEKKFEEFCKQNEEASEKKCQALLQELFQPLEEKLKQGCYSKPG 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHH-------GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSTT
T ss_pred HHHHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 34445556666655532 688877777777663221 11112222222222 1233444333222 222 1111 1
Q ss_pred CChhH---HHHHHHHHHHHhhhhhcchh---hhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012725 127 RTKED---VEKAISLVEALAVKLTQNEG---ELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFG 200 (457)
Q Consensus 127 rnKdd---VeeaismVEaLavqltqrE~---ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve 200 (457)
-.... ....+.-...-.-+|++.+- +-++.|..+...--...++-.+..|-+.++ ++..|.|+.-....+
T Consensus 149 g~~~~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~----~~k~e~~e~e~~~l~ 224 (297)
T PF02841_consen 149 GYQLFLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEE----QAKAEAAEKEKEKLE 224 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 11221 22222222223334444442 223444433333333444444444444433 333444555445544
Q ss_pred HHHHHHHhcCCC---CcchhHHHHHHHHHHHHhhhhccCCccc
Q 012725 201 EALEEEEKNSPK---SKTQDVERLVDEIQEARRIKRLHQPSKV 240 (457)
Q Consensus 201 ~aleEqe~~s~~---s~kqd~e~L~~EVqEARRIKmLH~PSKv 240 (457)
+-.++++..... +-.+.+..|.+.+.+.|+ .+++...++
T Consensus 225 e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~-~~~~e~e~~ 266 (297)
T PF02841_consen 225 EKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE-QLLQEQERL 266 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 444444443222 222356667777777666 566555443
No 81
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.96 E-value=4.1e+02 Score=28.29 Aligned_cols=78 Identities=23% Similarity=0.282 Sum_probs=54.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHH
Q 012725 174 AKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQ 253 (457)
Q Consensus 174 AkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~q 253 (457)
-+.-|++||..=.+.++.+++-|..+++++... .+...+++|+.-|+. =+.+|+.-
T Consensus 365 i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~---------------~~~~~~~~~~~~l~~---------a~~~l~~~ 420 (582)
T PF09731_consen 365 IKEKVEQERNGRLAKLAELNSRLKALEEALDAR---------------SEAEDENRRAQQLWL---------AVDALKSA 420 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 356689999999999999999999999988763 344566777766652 45666666
Q ss_pred HHHHhHHH-HHHHHHHHHhhhhc
Q 012725 254 IREKSVLS-LKIQKELAMNKRAE 275 (457)
Q Consensus 254 l~EKs~~~-v~L~KEL~~~kr~e 275 (457)
|..-.... .-|..||...+...
T Consensus 421 l~~~~~~~~~p~~~el~~l~~~~ 443 (582)
T PF09731_consen 421 LDSGNAGSPRPFEDELRALKELA 443 (582)
T ss_pred HHcCCCcCCCCHHHHHHHHHHhC
Confidence 65554433 56677777666553
No 82
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=44.87 E-value=56 Score=31.13 Aligned_cols=26 Identities=23% Similarity=0.450 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHH
Q 012725 243 MEHELHALRTQIREKSVLSLKIQKEL 268 (457)
Q Consensus 243 ME~El~~LR~ql~EKs~~~v~L~KEL 268 (457)
.|.||..||+-|.-|-..|..|++.|
T Consensus 41 vEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 41 VEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 39999999999999999999999987
No 83
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=44.59 E-value=2.4e+02 Score=27.96 Aligned_cols=139 Identities=23% Similarity=0.280 Sum_probs=80.1
Q ss_pred hhHHHHHHHH----HHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 012725 106 GHVLLKKLRD----ALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQE 181 (457)
Q Consensus 106 r~vLLKkLRd----~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eE 181 (457)
|-.|=++||. -|++||++=.+-|.....-.---+..|--+|--+|--.+.=.+|+.|.=. |-| ||
T Consensus 22 RE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEq---------kYL--EE 90 (205)
T PF12240_consen 22 REQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQ---------KYL--EE 90 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHH--HH
Confidence 3444455554 45688776554443332222233445666666666667777777777521 221 22
Q ss_pred hhhhHHHH-HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHH
Q 012725 182 KSFACAEI-ESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVL 260 (457)
Q Consensus 182 Ra~A~aEI-E~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~ 260 (457)
-+.=++.+ ..|.++-+|---.+.+....+-.+.-.++|++. ..-.|.-|||+=|+.|=.+|.||-.-
T Consensus 91 s~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~------------~a~~K~qemE~RIK~LhaqI~EKDAm 158 (205)
T PF12240_consen 91 SAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELH------------MANRKCQEMENRIKALHAQIAEKDAM 158 (205)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHH------------HhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22223333 235666677666666655555533334455442 22346779999999999999999877
Q ss_pred HHHHHHH
Q 012725 261 SLKIQKE 267 (457)
Q Consensus 261 ~v~L~KE 267 (457)
.-.||.-
T Consensus 159 IkVLQqr 165 (205)
T PF12240_consen 159 IKVLQQR 165 (205)
T ss_pred HHHHHhh
Confidence 6666654
No 84
>PRK12704 phosphodiesterase; Provisional
Probab=44.50 E-value=3.1e+02 Score=29.77 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=7.6
Q ss_pred HHHHhhcCCCeee
Q 012725 374 VETLLRKSSSEFN 386 (457)
Q Consensus 374 VEaL~rk~~tEFN 386 (457)
.|.++.+-..+|+
T Consensus 284 iee~~~~~~~~~~ 296 (520)
T PRK12704 284 IEEMVEKARKEVD 296 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666555554
No 85
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=44.41 E-value=1.8e+02 Score=26.49 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=14.7
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
|..|...|..|+++.|..|..+.+.+.+
T Consensus 79 L~~a~~ea~~ii~~A~~~a~~~~~~~~~ 106 (175)
T PRK14472 79 LAKADAEADKIIREGKEYAEKLRAEITE 106 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444433
No 86
>TIGR03825 FliH_bacil flagellar assembly protein FliH. This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.
Probab=44.17 E-value=2.5e+02 Score=27.23 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESA 192 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~A 192 (457)
|.+|-+.|..|+++.++.|..-.+.+
T Consensus 46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~ 71 (255)
T TIGR03825 46 LEKAEAEAAQIIEQAEAQAAAIREQI 71 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777776666544443
No 87
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=43.71 E-value=2.6e+02 Score=25.62 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=16.7
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhh
Q 012725 113 LRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGEL 153 (457)
Q Consensus 113 LRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~EL 153 (457)
+++.|+.=+.++. +++++|-..-+-..-.+.+-|.+|
T Consensus 52 v~~~L~~R~~~I~----~~l~~Ae~~~~eA~~~l~e~e~~L 88 (184)
T PRK13455 52 IGGMLDKRAEGIR----SELEEARALREEAQTLLASYERKQ 88 (184)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666555554 344444444333333333333333
No 88
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=43.64 E-value=1.9e+02 Score=26.49 Aligned_cols=24 Identities=29% Similarity=0.223 Sum_probs=14.9
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEI 189 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEI 189 (457)
-|++|...|..|+++.+..|..+.
T Consensus 82 ~L~~Ar~eA~~Ii~~A~~eAe~~~ 105 (167)
T PRK08475 82 KLEEAKEKAELIVETAKKEAYILT 105 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666553
No 89
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=43.61 E-value=2.1e+02 Score=24.62 Aligned_cols=31 Identities=19% Similarity=0.115 Sum_probs=20.3
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAV 195 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAa 195 (457)
.-|.+|...|+.|+++.|..|..+.+...+.
T Consensus 64 ~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~ 94 (140)
T PRK07353 64 QQLASARKQAQAVIAEAEAEADKLAAEALAE 94 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466677777777777777777766555544
No 90
>PRK02224 chromosome segregation protein; Provisional
Probab=43.32 E-value=5e+02 Score=28.83 Aligned_cols=36 Identities=11% Similarity=0.101 Sum_probs=23.1
Q ss_pred CcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 012725 237 PSKVMDMEHELHALRTQIREKSVLSLKIQKELAMNK 272 (457)
Q Consensus 237 PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~~~k 272 (457)
|+++-+++.++..|+..+.+--.....+++.|...+
T Consensus 411 e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 411 EDFLEELREERDELREREAELEATLRTARERVEEAE 446 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777766666655556666665544
No 91
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=43.04 E-value=1.4e+02 Score=30.25 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhhhccccCcceeecccccccce--eeEeeCCCCCCCCC--------------------CceeeEEEeee
Q 012725 261 SLKIQKELAMNKRAEENKSCLYVFDGSEALGSH--LRIRPRSDTAPSLS--------------------KCSIQWYRVSL 318 (457)
Q Consensus 261 ~v~L~KEL~~~kr~een~~~~yeLeG~e~LGS~--L~i~~~~d~~~dlS--------------------kcsiQWyRv~~ 318 (457)
....+..|+..++..=-. ..|.+.-....|.. ||+---++..++.+ ++.|+=||+.|
T Consensus 122 ~~~~~~~L~~L~ktNv~n-~~F~I~hdG~fGTINGlRLGrl~~~~V~W~EINAA~Gq~~LLL~~la~~l~~~f~~y~l~P 200 (314)
T PF04111_consen 122 YEYASNQLDRLRKTNVYN-DTFHIWHDGPFGTINGLRLGRLPNVPVEWNEINAAWGQTALLLQTLAKKLNFKFQRYRLVP 200 (314)
T ss_dssp HHHHHHHHHCHHT--TTT-TT--EEEETTEEEETTEEE--BTTB---HHHHHHHHHHHHHHHHHHHHHCT---SSEEEE-
T ss_pred HHHHHHHHHHHHhcCchh-ceeeEeecCCeeeECCeeeccCCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCcccceeEe
Confidence 334556666444433111 34444433355543 55554444444433 45555699999
Q ss_pred CCCccceecc------cccccccCCCCcccceee
Q 012725 319 DGSQKEIISG------ASKLAYAPEPLDVGRVLQ 346 (457)
Q Consensus 319 ~gsk~E~IsG------Atk~~YAPEP~DVGr~Lq 346 (457)
-||.--|+.- .+-|.|.+.-|.+|++..
T Consensus 201 ~Gs~S~I~~~~~~~~~~~~~ly~~~~~~~~~~f~ 234 (314)
T PF04111_consen 201 MGSFSKIEKLEGDKDKTTYPLYSSGSFSLGRLFS 234 (314)
T ss_dssp -GGG-EEEECS---TCEEEESS--SS----GGG-
T ss_pred cCCCCEEEEeccCCCCeEEecccCCCchhhhhhh
Confidence 9987766543 445566666666666554
No 92
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=42.76 E-value=90 Score=26.02 Aligned_cols=59 Identities=29% Similarity=0.384 Sum_probs=42.6
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFL 167 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~l 167 (457)
-|...+-+-|+..|++|..-+ +|+++||.+||.=.-++-=.+.|+.+-|.=|..+-+-+
T Consensus 35 ~e~~~~~~eL~~~l~~ie~~L-----~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i 93 (97)
T PF09177_consen 35 EELKWLKRELRNALQSIEWDL-----EDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQI 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHH
Confidence 455667788888888888754 89999999999887666556677777766665554433
No 93
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=42.54 E-value=2.8e+02 Score=25.57 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012725 155 QEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 155 QeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~R 198 (457)
.+|.+++...+.+.+--.+-..=++.+-+.-+++||+++.-+.|
T Consensus 113 ~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr 156 (177)
T PF07798_consen 113 LEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR 156 (177)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666655555555666677777777777765544
No 94
>PRK12704 phosphodiesterase; Provisional
Probab=42.51 E-value=3.1e+02 Score=29.78 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=12.0
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 168 KQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
++|--+|+....+.+..|..|+...|+
T Consensus 45 keA~~eAke~~ke~~leaeeE~~~~R~ 71 (520)
T PRK12704 45 EEAKKEAEAIKKEALLEAKEEIHKLRN 71 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 95
>PLN02320 seryl-tRNA synthetase
Probab=42.33 E-value=1.9e+02 Score=31.64 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=59.2
Q ss_pred hhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHH--hhHHHHHHHH
Q 012725 102 ASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQ--ASEDAKKLVN 179 (457)
Q Consensus 102 a~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~ 179 (457)
+.||-..+.++.-.+-++|+-|- .+. +|++-+++- .++.+--.++-+-++|-.++++-+++ ..+|+..+++
T Consensus 65 ~mlD~k~ir~n~~~v~~~l~~R~--~~~-~vd~l~~ld----~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~ 137 (502)
T PLN02320 65 AAIDFKWIRDNKEAVAINIRNRN--SNA-NLELVLELY----ENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVE 137 (502)
T ss_pred cccCHHHHHhCHHHHHHHHHhcC--CCc-CHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHH
Confidence 56887777777777777777763 333 366555543 33333334444444555555555543 3456667776
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012725 180 QEKSFACAEIESARAVVQRFGEALEEEEKNS 210 (457)
Q Consensus 180 eERa~A~aEIE~ARAaV~Rve~aleEqe~~s 210 (457)
+-+.. ..+|....+.+..+++.|++.-...
T Consensus 138 ~~k~l-k~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 138 EGKNL-KEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 65543 3577777777777777777655443
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=42.11 E-value=2.1e+02 Score=26.76 Aligned_cols=39 Identities=26% Similarity=0.365 Sum_probs=20.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 183 SFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 183 a~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
.....+++..+.-+.++...++... +.++..++++.+.|
T Consensus 59 ~~~~~~~~~~~~r~~~l~~~i~~~~--------~~i~~~r~~l~~~~ 97 (302)
T PF10186_consen 59 QQLKREIEELRERLERLRERIERLR--------KRIEQKRERLEELR 97 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 3444555555555555555544432 35555555555544
No 97
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=41.84 E-value=3.2e+02 Score=26.15 Aligned_cols=93 Identities=26% Similarity=0.369 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhh---hhH
Q 012725 110 LKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKS---FAC 186 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa---~A~ 186 (457)
|-+++|.|..|..=+..+|-++.++ |.-+|+.-+.+|......+..|..-+..++...++-+..|+. .|+
T Consensus 98 l~k~~~~l~~L~~L~~dknL~eRee-------L~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~ 170 (194)
T PF15619_consen 98 LLKTKDELKHLKKLSEDKNLAEREE-------LQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQ 170 (194)
T ss_pred HHHHHHHHHHHHHHHHcCCchhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 4468888888888888888887654 566777777788888888888999999999888888877764 577
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 012725 187 AEIESARAVVQRFGEALEEEEKN 209 (457)
Q Consensus 187 aEIE~ARAaV~Rve~aleEqe~~ 209 (457)
.++..+.-=|.++..-|+|.++.
T Consensus 171 ~~~~~l~~ei~~L~~klkEKer~ 193 (194)
T PF15619_consen 171 EEVKSLQEEIQRLNQKLKEKERE 193 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 88889999999999999888763
No 98
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=41.32 E-value=3.9e+02 Score=26.90 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=13.1
Q ss_pred cCCCChhHHHHHHHHHHHHhhhhhcchhh
Q 012725 124 MAGRTKEDVEKAISLVEALAVKLTQNEGE 152 (457)
Q Consensus 124 vaGrnKddVeeaismVEaLavqltqrE~E 152 (457)
...-++++++.+-.-+..+..++..+-.+
T Consensus 203 ~~~~D~~eL~~lr~eL~~~~~~i~~~k~~ 231 (325)
T PF08317_consen 203 IESCDQEELEALRQELAEQKEEIEAKKKE 231 (325)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555544444444444433333
No 99
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=40.46 E-value=2.2e+02 Score=26.09 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=24.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 012725 149 NEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGE 201 (457)
Q Consensus 149 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~ 201 (457)
|+....+.-.+..+.-.-.++.-++++....+.|..|..-|+.|+...+...+
T Consensus 54 R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~ 106 (167)
T PRK08475 54 RINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQ 106 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444455555555555555555555555544433
No 100
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=40.43 E-value=1.3e+02 Score=27.47 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012725 164 ANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFG 200 (457)
Q Consensus 164 A~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve 200 (457)
...+++|-..|..|+++.+..|...++.|+.-.+...
T Consensus 9 ~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~ 45 (198)
T PRK03963 9 QEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKA 45 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888887776555433
No 101
>PRK04863 mukB cell division protein MukB; Provisional
Probab=40.36 E-value=8.2e+02 Score=30.40 Aligned_cols=122 Identities=17% Similarity=0.149 Sum_probs=57.8
Q ss_pred ChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhh--hhhHHHHHHHHHHHHHHHHHHHH
Q 012725 128 TKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEK--SFACAEIESARAVVQRFGEALEE 205 (457)
Q Consensus 128 nKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eER--a~A~aEIE~ARAaV~Rve~aleE 205 (457)
.+....+|....+.....|.+=+.++-.-+..+++|..-.. .|++-.+... -....++......+..+...+++
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaE----kA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee 366 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQ----AASDHLNLVQTALRQQEKIERYQADLEELEERLEE 366 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665555555433444444433333 3333222211 12245555555555555555555
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012725 206 EEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKELA 269 (457)
Q Consensus 206 qe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~ 269 (457)
.+... +++.+++.+.. .+.-.+|.++..|+.++.+.....-.++.++.
T Consensus 367 ~eeeL--------eeleeeleele--------eEleelEeeLeeLqeqLaelqqel~elQ~el~ 414 (1486)
T PRK04863 367 QNEVV--------EEADEQQEENE--------ARAEAAEEEVDELKSQLADYQQALDVQQTRAI 414 (1486)
T ss_pred HHHHH--------HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 22222222221 12224566666676666665555555555543
No 102
>COG1666 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.33 E-value=18 Score=34.55 Aligned_cols=23 Identities=30% Similarity=0.771 Sum_probs=19.4
Q ss_pred HHhhc---ccCCCChhHHHHHHHHHH
Q 012725 118 EALRG---RMAGRTKEDVEKAISLVE 140 (457)
Q Consensus 118 esLrG---RvaGrnKddVeeaismVE 140 (457)
.++.| ||+|+++||+...|+||-
T Consensus 125 aqIQGdqVRVtgK~rDDLQaVialvr 150 (165)
T COG1666 125 AQIQGDQVRVTGKKRDDLQAVIALVR 150 (165)
T ss_pred eeeccceEEEeccchhhHHHHHHHHH
Confidence 34445 999999999999999984
No 103
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=40.30 E-value=2.3e+02 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.102 Sum_probs=13.8
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
|.+|...|..++++.+..|..+.+...+
T Consensus 85 L~~A~~ea~~ii~~A~~~ae~~~~~il~ 112 (184)
T CHL00019 85 LRQAELEADEIRVNGYSEIEREKENLIN 112 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554444433
No 104
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=40.10 E-value=2.2e+02 Score=26.16 Aligned_cols=28 Identities=18% Similarity=0.040 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 012725 172 EDAKKLVNQEKSFACAEIESARAVVQRF 199 (457)
Q Consensus 172 eDAkkiV~eERa~A~aEIE~ARAaV~Rv 199 (457)
.++++.+.+.|..|..-|+.|++...+.
T Consensus 79 ~e~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 79 EKARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433
No 105
>PRK10807 paraquat-inducible protein B; Provisional
Probab=39.78 E-value=1.4e+02 Score=32.57 Aligned_cols=109 Identities=12% Similarity=0.193 Sum_probs=66.8
Q ss_pred cCCCCchHHHHHHHHHhHHHhhcccchhhhHHhhhhchhHHHhhhHHHh--hhh----hhhchhhHHHHHHHHHHHHhhc
Q 012725 49 DSKGLSLKEVVEKETVQLSEQHKRLSVRDLASKFDKNLTAAAKLADEAK--LRD----VASLEGHVLLKKLRDALEALRG 122 (457)
Q Consensus 49 d~~~~slKEvVakEta~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK--~re----va~Ler~vLLKkLRd~LesLrG 122 (457)
-|..||-=+-+.+-..+++++-.+|.+.++....+.-|..+.++..+.. +.+ +++=+...|-..|+.+|.+|..
T Consensus 408 IPt~ps~l~~l~~~~~~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~ 487 (547)
T PRK10807 408 IPTVSGGLAQIQQKLMEALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNR 487 (547)
T ss_pred eecCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 4556665566677788899999999999999887666664444443311 000 0122233445666777777766
Q ss_pred ccCC------------CChhHHHHHHHHHHHHhhhhhcchhhhhhHH
Q 012725 123 RMAG------------RTKEDVEKAISLVEALAVKLTQNEGELIQEK 157 (457)
Q Consensus 123 RvaG------------rnKddVeeaismVEaLavqltqrE~ELiQeK 157 (457)
-++| ++-++++.+..=+..|+-+|.++-.-||..|
T Consensus 488 ~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~P~aLi~g~ 534 (547)
T PRK10807 488 SMQGFQPGSPAYNKMVADMQRLDQVLRELQPVLKTLNEKSNALVFEA 534 (547)
T ss_pred HHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCC
Confidence 6666 3345556666666666666666666666554
No 106
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=39.75 E-value=3e+02 Score=25.18 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=11.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 172 EDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 172 eDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
+++++...+.|..|..-++.|+...
T Consensus 73 ~e~e~~l~~a~~ea~~ii~~a~~~a 97 (173)
T PRK13453 73 EENKQKLKETQEEVQKILEDAKVQA 97 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 107
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=39.61 E-value=2.1e+02 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=10.6
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHH
Q 012725 168 KQASEDAKKLVNQEKSFACAEIES 191 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~aEIE~ 191 (457)
.+|...|+.|+++.+..|..+.+.
T Consensus 110 ~~A~~eA~~Ii~~A~~eAe~~~e~ 133 (205)
T PRK06231 110 ENALAQAKEIIDQANYEALQLKSE 133 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 108
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=39.55 E-value=3.3e+02 Score=25.85 Aligned_cols=103 Identities=22% Similarity=0.293 Sum_probs=61.6
Q ss_pred hhhhchhhHHHHHHHHHHHHhhccc-CCC-----------ChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHH-H
Q 012725 100 DVASLEGHVLLKKLRDALEALRGRM-AGR-----------TKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLAN-F 166 (457)
Q Consensus 100 eva~Ler~vLLKkLRd~LesLrGRv-aGr-----------nKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~-~ 166 (457)
|+.+=+|..|-..+++.|...-... .|= -.+++.+|+..+.+-.- +..+.++|-..-|. -
T Consensus 134 eil~~~R~~i~~~i~~~l~~~~~~~~~Gi~v~~v~i~~i~~p~~i~~a~~~~~~A~q-------~~~~~~~eae~~a~~~ 206 (266)
T cd03404 134 DVLTEGREEIAQDVRELLQAILDAYKAGIEIVGVNLQDADPPEEVQDAFDDVNKARQ-------DRERLINEAEAYANEV 206 (266)
T ss_pred HHHHhCHHHHHHHHHHHHHHHhhccCCCeEEEEEEEEeCCCCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 3333346777777666664422211 132 24567777665433221 22233333333333 3
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKN 209 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~ 209 (457)
+.+|-.+|.++.-+..+.+.+++..|++-..++...++.-.++
T Consensus 207 ~~~A~~ea~~~~~~A~a~~~~~~~~ae~~a~~~~~~~~a~~~~ 249 (266)
T cd03404 207 VPKARGEAARIIQEAEAYKEEVIAEAQGEAARFESLLAEYKKA 249 (266)
T ss_pred HHHhHhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 4678889999999999999999999998888877666666554
No 109
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=39.49 E-value=1.8e+02 Score=27.54 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=28.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 178 VNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 178 V~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
..+||...-++++..+.-...++.-|+. .+...++-++.|+++++.++
T Consensus 101 ~~~eR~~~l~~l~~l~~~~~~l~~el~~----~~~~Dp~~i~~~~~~~~~~~ 148 (188)
T PF03962_consen 101 ESEEREELLEELEELKKELKELKKELEK----YSENDPEKIEKLKEEIKIAK 148 (188)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCHHHHHHHHHHHHHHH
Confidence 3367777777777777666666655552 23334556666666666554
No 110
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=39.40 E-value=56 Score=36.26 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccccCCCCcccceeeeeee-cCCcE-------EEEEecCCCCCCCCchh
Q 012725 331 KLAYAPEPLDVGRVLQADIL-SNGQK-------ITVTSAGPIESAAGLGS 372 (457)
Q Consensus 331 k~~YAPEP~DVGr~LqadI~-~~G~k-------~~~~T~GPidpAaGL~~ 372 (457)
-..|.|-+-|||.+|..+.+ .|+.. .++.| +|+-|+||.-.
T Consensus 180 ~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t-~~v~~~p~p~~ 228 (606)
T PLN03144 180 SKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILT-SRVIPAPSPTP 228 (606)
T ss_pred CccccCChhhCCceEEEEEEEcccccCCCCccceeecc-cceecCCCCCC
Confidence 45899999999999999987 45543 45555 89999998765
No 111
>TIGR01933 hflK HflK protein. HflK and HflC are paralogs encoded by tandem genes in Proteobacteria, spirochetes, and some other bacterial lineages. The HflKC complex is anchored in the membrane and exposed to the periplasm. The complex is not active as a protease, but rather binds to and appears to modulate the ATP-dependent protease FtsH. The overall function of HflKC is not fully described.//Regulation of FtsH by HflKC appears to be negative (PubMed:8947034,PubMed:96367)
Probab=39.33 E-value=2.7e+02 Score=26.41 Aligned_cols=95 Identities=23% Similarity=0.281 Sum_probs=54.3
Q ss_pred hhhHHHHHHHHHHHHhhc-ccCCCC-----------hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHH-HHHhh
Q 012725 105 EGHVLLKKLRDALEALRG-RMAGRT-----------KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANF-LKQAS 171 (457)
Q Consensus 105 er~vLLKkLRd~LesLrG-RvaGrn-----------KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~-lKqAS 171 (457)
+|..+-+.+++.|...-. .=.|=. .++|.+|+.-+- +.++.. .+...|-..-|+. +..|-
T Consensus 112 ~R~~i~~~i~~~l~~~~~~~~~GI~V~~v~I~~i~~p~~v~~a~~~~~------~a~q~~-~~~~~~ae~~~~~~~~~a~ 184 (261)
T TIGR01933 112 GRSQIREDTKERLNEIIDNYDLGITVTDVNFQSARPPEEVKEAFDDVI------IAREDE-ERYINEAEAYANEVVPKAR 184 (261)
T ss_pred CHHHHHHHHHHHHHHHHhhhcCCcEEEEEEEEecCCCHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 566666666666554222 112322 345666644332 221111 2222333333333 45577
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 172 EDAKKLVNQEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 172 eDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
-+|.+++.+..+.|.+.+..|++-..++....+.-
T Consensus 185 ~~a~~~~~~Aea~~~~~~~~a~g~a~~~~~~~~ay 219 (261)
T TIGR01933 185 GDAQRIIEEARGYKERRINRAKGDVARFTKLLAEY 219 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88888888888888899999988888877665543
No 112
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=38.69 E-value=47 Score=25.80 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=15.5
Q ss_pred cceeeEeeCCCCCCCCCCceeeEEE
Q 012725 291 GSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 291 GS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
|+.+.+.....+.|.- .|.|||
T Consensus 1 G~~~~l~C~~~g~P~p---~v~W~k 22 (73)
T cd05852 1 GGRVIIECKPKAAPKP---KFSWSK 22 (73)
T ss_pred CCeEEEEEecceeCCC---EEEEEe
Confidence 5566676666666653 799998
No 113
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=38.64 E-value=6.1e+02 Score=28.44 Aligned_cols=58 Identities=22% Similarity=0.301 Sum_probs=25.3
Q ss_pred HhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012725 142 LAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFG 200 (457)
Q Consensus 142 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve 200 (457)
|--++.+-+.+|.+.+.+..+|-.-.+...... .-+.+|+..-..+.+.+++-+..++
T Consensus 169 l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~-e~l~~E~~~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 169 LREEVERLEAELEQEEEEMEQLKQQQKELTESS-EELKEERESLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555555554444333322 2233444444444444444333333
No 114
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=38.43 E-value=29 Score=29.30 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=13.6
Q ss_pred CCChhHHHHHHHHHH-----------HHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 126 GRTKEDVEKAISLVE-----------ALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 126 GrnKddVeeaismVE-----------aLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
|-|+++|..-|.-|. .|--++..-+.+|-+-+.....|-+.|-+|-.-|.+++......|..-|+.|++
T Consensus 17 GYd~~eVD~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i~~~A~~ 96 (131)
T PF05103_consen 17 GYDPDEVDDFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEIIEEAQK 96 (131)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------------------------
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 667777766554432 233334444444555555556666666666666666666666666666666666
Q ss_pred HHHH
Q 012725 195 VVQR 198 (457)
Q Consensus 195 aV~R 198 (457)
-..+
T Consensus 97 ~a~~ 100 (131)
T PF05103_consen 97 EAEE 100 (131)
T ss_dssp ----
T ss_pred HHHH
Confidence 5544
No 115
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=37.95 E-value=4.4e+02 Score=26.65 Aligned_cols=38 Identities=13% Similarity=0.214 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHH
Q 012725 218 VERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIRE 256 (457)
Q Consensus 218 ~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~E 256 (457)
+.++..+..+.+.. .-..=-+|.+++.+|..|+.+|.+
T Consensus 263 l~~le~~l~~l~~~-y~~~hP~v~~l~~~i~~l~~~l~~ 300 (444)
T TIGR03017 263 IARAESKLAELSQR-LGPNHPQYKRAQAEINSLKSQLNA 300 (444)
T ss_pred HHHHHHHHHHHHHH-hCCCCcHHHHHHHHHHHHHHHHHH
Confidence 33444444444332 222333566677777777776654
No 116
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=37.90 E-value=2.8e+02 Score=24.33 Aligned_cols=101 Identities=21% Similarity=0.258 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 012725 129 KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEK 208 (457)
Q Consensus 129 KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~ 208 (457)
.++++..+.=.+-||-+....+.+|...|.++...-..++..-.-=..... +. ..-..-=+-.+...+++.+..+.+.
T Consensus 33 ~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~-~~-~~l~~~~s~~~l~~~L~~~~~e~ee 110 (150)
T PF07200_consen 33 QQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQ-QQ-DELSSNYSPDALLARLQAAASEAEE 110 (150)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-HHHHccCCHHHHHHHHHHHHHHHHH
Confidence 356666777788888888888999999999998877777664433322222 11 1113333455677777777777665
Q ss_pred cCCC------CcchhHHHHHHHHHHHHhh
Q 012725 209 NSPK------SKTQDVERLVDEIQEARRI 231 (457)
Q Consensus 209 ~s~~------s~kqd~e~L~~EVqEARRI 231 (457)
.|.. .|+-|++...++-.+.|.+
T Consensus 111 eSe~lae~fl~g~~d~~~Fl~~f~~~R~~ 139 (150)
T PF07200_consen 111 ESEELAEEFLDGEIDVDDFLKQFKEKRKL 139 (150)
T ss_dssp HHHHHC-S-SSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 5432 3445888888888888754
No 117
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=37.84 E-value=1.8e+02 Score=30.75 Aligned_cols=12 Identities=8% Similarity=0.263 Sum_probs=6.0
Q ss_pred hhHHHHHHHHHH
Q 012725 129 KEDVEKAISLVE 140 (457)
Q Consensus 129 KddVeeaismVE 140 (457)
++.|.+.|.-.|
T Consensus 34 ~~~I~~~L~eAe 45 (445)
T PRK13428 34 QDTVRQQLAESA 45 (445)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 118
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=37.77 E-value=4.1e+02 Score=26.19 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHH
Q 012725 129 KEDVEKAISLVEALAVKLTQNEGELIQEKFEVK 161 (457)
Q Consensus 129 KddVeeaismVEaLavqltqrE~ELiQeK~EVk 161 (457)
+..++++|- .+..+||..|.++..++....
T Consensus 185 ~~~~~~~il---q~d~~L~~~ek~~~~~~~k~e 214 (297)
T PF02841_consen 185 KESMENSIL---QADQQLTEKEKEIEEEQAKAE 214 (297)
T ss_dssp CHHHHHHHH---HH-TTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 455566653 355688888877766655443
No 119
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.63 E-value=2.4e+02 Score=29.48 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=47.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 151 GELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 151 ~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
.+|.+|=.++.......+|-.|+--++-+. ....|..-+--...+.+.|+.-+..+...+.+.+++|+++++++|
T Consensus 7 ~eL~~efq~Lqethr~Y~qKleel~~lQ~~----C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~ 81 (330)
T PF07851_consen 7 EELQKEFQELQETHRSYKQKLEELSKLQDK----CSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERR 81 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 355556666666666677766666555443 334555555555666666666655556666677888888888776
No 120
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=36.85 E-value=2.8e+02 Score=25.13 Aligned_cols=32 Identities=16% Similarity=0.067 Sum_probs=21.6
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
.-|.+|...|..|+++.+..|..+++.+++..
T Consensus 69 ~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A 100 (167)
T PRK14475 69 AEREEAERQAAAMLAAAKADARRMEAEAKEKL 100 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777777766665543
No 121
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=36.78 E-value=1.9e+02 Score=24.27 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=44.5
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccch
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDME 244 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME 244 (457)
..+..|-....+++.+.|..|..||+..|+-.. +-+++.......+..+....|.++.+
T Consensus 18 ~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e---~~~~~~~~~~~~~~~~~~~~l~~et~------------------ 76 (105)
T PF03179_consen 18 EIVEEARKEREQRLKQAKEEAEKEIEEFRAEAE---EEFKEKEAEAEGEAEQEAEELEKETE------------------ 76 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH-S------HHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccchhHHHHHHHHHH------------------
Confidence 456677777778888888888888888876443 22333222222233345555555543
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 012725 245 HELHALRTQIREKSVLSLKI 264 (457)
Q Consensus 245 ~El~~LR~ql~EKs~~~v~L 264 (457)
.+|..|++.+......++.+
T Consensus 77 ~~i~~i~~~~~~~~~~vv~~ 96 (105)
T PF03179_consen 77 EKIEEIKKSASKNKDKVVDM 96 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 35666666666665555544
No 122
>PRK01919 tatB sec-independent translocase; Provisional
Probab=36.41 E-value=96 Score=29.83 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 012725 189 IESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKEL 268 (457)
Q Consensus 189 IE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL 268 (457)
|-.+|-.+.-+.+.+++.... +|+.+++++++++-+ +.+..|+. ..-.+.++|
T Consensus 36 i~k~Rr~~~d~K~ev~~E~e~------dElrk~~~~~e~~~~-----------~v~~si~~----------~~~~~~~~~ 88 (169)
T PRK01919 36 FGRAQRYINDVKAEVSREIEL------DELRKMKTDFESAAR-----------DVENTIHD----------NLSEHESDL 88 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHH-----------HHHHHHHH----------HHHHHHhhH
Q ss_pred HHhhhhccccCcceeecccccccceeeEeeCCCCCCCCCCc-----------eeeEEEeeeCCCccceeccccc
Q 012725 269 AMNKRAEENKSCLYVFDGSEALGSHLRIRPRSDTAPSLSKC-----------SIQWYRVSLDGSQKEIISGASK 331 (457)
Q Consensus 269 ~~~kr~een~~~~yeLeG~e~LGS~L~i~~~~d~~~dlSkc-----------siQWyRv~~~gsk~E~IsGAtk 331 (457)
.-.-......+....+++... |.....++-++- .=|||+-.+ |-..-++|||-|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~k~wr~k~~a~p~wyk~~~-~~rt~~~sgaar 153 (169)
T PRK01919 89 NDAWNSAVGSLGSAAADAPAV--------GSWRSSPPAYRHKRKNWRVKQAATPQWYKRAS-GVRTRVQSGAAR 153 (169)
T ss_pred HHHHhhccCCccccccCcccc--------cccccCCccccCccccccccCCCCcHHHHHhh-cchhHhhhhHHH
No 123
>PRK01005 V-type ATP synthase subunit E; Provisional
Probab=36.39 E-value=1.3e+02 Score=28.98 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=9.5
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAE 188 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aE 188 (457)
.+.+|-..|.+|+++.+..+..|
T Consensus 43 Ii~eA~~EAe~ii~~A~~eae~e 65 (207)
T PRK01005 43 IIAEAQEEAEKIIRSAEETADQK 65 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333333
No 124
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=36.00 E-value=11 Score=43.61 Aligned_cols=32 Identities=31% Similarity=0.306 Sum_probs=25.7
Q ss_pred CCCCCCCceeeEEEeeeCCCccceecccccccccCCCCcccceee
Q 012725 302 TAPSLSKCSIQWYRVSLDGSQKEIISGASKLAYAPEPLDVGRVLQ 346 (457)
Q Consensus 302 ~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~Lq 346 (457)
...|||+|+ |||++.- | -.|-|+-.|||+.+-
T Consensus 537 tgiDLS~c~-qW~~f~e------I------rY~R~~~~dvg~~~p 568 (1194)
T KOG4246|consen 537 TGIDLSNCR-QWNPFLE------I------RYDRVGTDDVGVFSP 568 (1194)
T ss_pred cccchhhhh-hhcchhe------e------EecccCccccccccc
Confidence 568999997 9999862 1 357888899999887
No 125
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=35.77 E-value=2.6e+02 Score=26.91 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=14.9
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESA 192 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~A 192 (457)
|.+|...|..|+++.|..|.++.+..
T Consensus 66 l~~a~~ea~~i~~~A~~eA~~~~~~i 91 (246)
T TIGR03321 66 NEELDQQREVLLTKAKEEAQAERQRL 91 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666554433
No 126
>PF04461 DUF520: Protein of unknown function (DUF520); InterPro: IPR007551 This entry represents the UPF0234 family of uncharacterised proteins.; PDB: 1IN0_A.
Probab=35.69 E-value=20 Score=33.92 Aligned_cols=19 Identities=26% Similarity=0.760 Sum_probs=16.5
Q ss_pred ccCCCChhHHHHHHHHHHH
Q 012725 123 RMAGRTKEDVEKAISLVEA 141 (457)
Q Consensus 123 RvaGrnKddVeeaismVEa 141 (457)
||.|+++||.-++|+++-.
T Consensus 129 RVtgKkrDDLQ~viallk~ 147 (160)
T PF04461_consen 129 RVTGKKRDDLQEVIALLKE 147 (160)
T ss_dssp EEEES-HHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHHc
Confidence 9999999999999999754
No 127
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=35.61 E-value=4.1e+02 Score=25.50 Aligned_cols=70 Identities=19% Similarity=0.311 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 012725 112 KLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEK 182 (457)
Q Consensus 112 kLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eER 182 (457)
+|+..|.+|..-+.| +.+++.+.+.-+..+.-.|..+-..+-+--.....+.+.|.+.++|...+++.-.
T Consensus 150 ~l~~~l~~l~~~l~~-~~~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~ 219 (291)
T TIGR00996 150 KLNAILNALAEALAG-QGPQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLDNLA 219 (291)
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355666666655554 4567888887777777777776666666555566666666666666666655433
No 128
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=35.61 E-value=3.7e+02 Score=25.06 Aligned_cols=33 Identities=6% Similarity=0.139 Sum_probs=22.0
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~R 198 (457)
-|++|...|..|+++.+..|...++.|+.-...
T Consensus 64 ~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ 96 (154)
T PRK06568 64 QIKKLETLRSQMIEESNEVTKKIIQEKTKEIEE 96 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777776666654444
No 129
>PRK11637 AmiB activator; Provisional
Probab=35.45 E-value=5.2e+02 Score=26.68 Aligned_cols=8 Identities=25% Similarity=0.048 Sum_probs=4.5
Q ss_pred eeEEEEee
Q 012725 385 FNVVISQM 392 (457)
Q Consensus 385 FNVvi~Q~ 392 (457)
-|+||++-
T Consensus 360 G~~vii~h 367 (428)
T PRK11637 360 GLVVVVEH 367 (428)
T ss_pred ccEEEEEe
Confidence 35666664
No 130
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.58 E-value=2.3e+02 Score=31.23 Aligned_cols=119 Identities=27% Similarity=0.259 Sum_probs=66.0
Q ss_pred hhcchhhhhhHHHHHHHH-HHHHHHhhHHHHHHHHHhhhhhHHHHHHHHH-----------HHHHHHHHHHHHHhcCCCC
Q 012725 146 LTQNEGELIQEKFEVKKL-ANFLKQASEDAKKLVNQEKSFACAEIESARA-----------VVQRFGEALEEEEKNSPKS 213 (457)
Q Consensus 146 ltqrE~ELiQeK~EVkKl-A~~lKqASeDAkkiV~eERa~A~aEIE~ARA-----------aV~Rve~aleEqe~~s~~s 213 (457)
..|+-.||---|.|-.|- .+-+.-|++|--.+ .-+-..|+||.|+-+| ||--|..+.+|.--+.+++
T Consensus 11 ~nqkrk~~~~a~ee~~~rq~a~~qa~q~dl~~l-rtql~~a~aeme~ikaia~vsE~tk~EaV~av~rq~~eeVaSlqa~ 89 (542)
T KOG0993|consen 11 FNQKRKELYLAKEEDLKRQNAVLQAAQDDLGHL-RTQLWEAQAEMENIKAIATVSEPTKSEAVSAVVRQEEEEVASLQAS 89 (542)
T ss_pred HHHhhhhcccchhhHHHhccchhhhhcchHHHH-HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHhhccccchhHHH
Confidence 344444444444444333 33455566666444 4456778888887655 3334443433332222222
Q ss_pred c----------------------chhHHHHHHHHHHHHhhhhccCC-------------------cccccchHHHHHHHH
Q 012725 214 K----------------------TQDVERLVDEIQEARRIKRLHQP-------------------SKVMDMEHELHALRT 252 (457)
Q Consensus 214 ~----------------------kqd~e~L~~EVqEARRIKmLH~P-------------------SKvMDME~El~~LR~ 252 (457)
- .|+-+.+.+||..+++.----+| +-||-||.||..|..
T Consensus 90 ~k~~~~~ye~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~ 169 (542)
T KOG0993|consen 90 QKSPNPTYECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKK 169 (542)
T ss_pred hcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHH
Confidence 1 23667788888877765332222 348899999999987
Q ss_pred HHHHHhHHHHHHHHHHH
Q 012725 253 QIREKSVLSLKIQKELA 269 (457)
Q Consensus 253 ql~EKs~~~v~L~KEL~ 269 (457)
-+.+-- ++-+||.
T Consensus 170 kl~~aE----~~i~El~ 182 (542)
T KOG0993|consen 170 KLAKAE----QRIDELS 182 (542)
T ss_pred HHHhHH----HHHHHHH
Confidence 766543 4445553
No 131
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=34.50 E-value=2.8e+02 Score=26.53 Aligned_cols=90 Identities=26% Similarity=0.331 Sum_probs=61.2
Q ss_pred hchhhHHHHHHHHHHHHhh--cccCCCC--hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHH-
Q 012725 103 SLEGHVLLKKLRDALEALR--GRMAGRT--KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKL- 177 (457)
Q Consensus 103 ~Ler~vLLKkLRd~LesLr--GRvaGrn--KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkki- 177 (457)
.|.-.|=-.++.++|+.|. |+|.-+| -+||++.+.- -|..|-..+++.++|-.+|++|. +..-+
T Consensus 97 ~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D----------~~arl~~l~~~~~rl~~ll~ka~-~~~d~l 165 (262)
T PF14257_consen 97 SLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVD----------LEARLKNLEAEEERLLELLEKAK-TVEDLL 165 (262)
T ss_pred EEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHH----------HHHHHHHHHHHHHHHHHHHHhcC-CHHHHH
Confidence 4444444466777777665 5776665 4788886654 44567777888899999999986 44444
Q ss_pred -HHHhhhhhHHHHHHHHHHHHHHHHHH
Q 012725 178 -VNQEKSFACAEIESARAVVQRFGEAL 203 (457)
Q Consensus 178 -V~eERa~A~aEIE~ARAaV~Rve~al 203 (457)
++.+=+.-+.|||+++.-...+....
T Consensus 166 ~ie~~L~~v~~eIe~~~~~~~~l~~~v 192 (262)
T PF14257_consen 166 EIERELSRVRSEIEQLEGQLKYLDDRV 192 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556677889999888766655443
No 132
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=34.49 E-value=4.9e+02 Score=29.20 Aligned_cols=46 Identities=37% Similarity=0.482 Sum_probs=29.7
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHh-----hhhccCCcccccch----HHHHHHHHHHH
Q 012725 207 EKNSPKSKTQDVERLVDEIQEARR-----IKRLHQPSKVMDME----HELHALRTQIR 255 (457)
Q Consensus 207 e~~s~~s~kqd~e~L~~EVqEARR-----IKmLH~PSKvMDME----~El~~LR~ql~ 255 (457)
+..+..+ -.|.|-+-|+-.-+ .|.|..|||.+|=. .||+.||+|+.
T Consensus 591 ~~~ss~S---P~evLDryIq~~~dAhs~~~kRl~~~sks~~~~~~~~d~i~~~~~~l~ 645 (668)
T PF04388_consen 591 QRISSES---PLEVLDRYIQQGSDAHSKELKRLPLPSKSYDTHFGPEDEIDTLRSQLL 645 (668)
T ss_pred hcccccC---hHHHHHHHHHHHHHhhhhhhhhcccccccccCCCCcHHHHHHHHHHHH
Confidence 3444555 34444444444333 34788999999932 69999999987
No 133
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.31 E-value=5.9e+02 Score=29.22 Aligned_cols=97 Identities=26% Similarity=0.342 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 012725 132 VEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSP 211 (457)
Q Consensus 132 VeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~ 211 (457)
+.+-=.+||.|.-+-+-=+.++.+.|.|+-+|=+-|-++....+ ....-.-||+.-.--+.+++..|+|+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~-----~~~~~~rei~~~~~~I~~L~~~L~e~~---- 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR-----DKVRKDREIRARDRRIERLEKELEEKK---- 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhhHHHHHHHHHHHHHHHHHHHHH----
Confidence 33344577777777777777888888888888887777766554 112234577777777888888888764
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccCCcccc
Q 012725 212 KSKTQDVERLVDEIQEARRIKRLHQPSKVM 241 (457)
Q Consensus 212 ~s~kqd~e~L~~EVqEARRIKmLH~PSKvM 241 (457)
..+|+|.++..+.|++++|-.--+.|
T Consensus 495 ----~~ve~L~~~l~~l~k~~~lE~sG~g~ 520 (652)
T COG2433 495 ----KRVEELERKLAELRKMRKLELSGKGT 520 (652)
T ss_pred ----HHHHHHHHHHHHHHHHHhhhhcCCCc
Confidence 37889999999999998876655554
No 134
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=34.26 E-value=7.1e+02 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=19.4
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012725 243 MEHELHALRTQIREKSVLSLKIQKELA 269 (457)
Q Consensus 243 ME~El~~LR~ql~EKs~~~v~L~KEL~ 269 (457)
+..+|+.++.++...-...+-|++||.
T Consensus 288 LkeqLr~~qe~lqaSqq~~~~L~~EL~ 314 (546)
T PF07888_consen 288 LKEQLRSAQEQLQASQQEAELLRKELS 314 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777788875
No 135
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=33.50 E-value=3.2e+02 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=19.0
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
.-|.+|...|+.|+++.+..|..+.+.+.+..
T Consensus 54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a 85 (147)
T TIGR01144 54 VILKEAKDEAQEIIENANKRGSEILEEAKAEA 85 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655555433
No 136
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.21 E-value=2.4e+02 Score=23.54 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=11.7
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESA 192 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~A 192 (457)
++.|-.+|..++++.+..|..+++..
T Consensus 60 l~~a~~ea~~i~~~a~~~a~~~~~~~ 85 (132)
T PF00430_consen 60 LAEAREEAQEIIEEAKEEAEKEKEEI 85 (132)
T ss_dssp HHHHHHHHCHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 137
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.15 E-value=2.7e+02 Score=31.60 Aligned_cols=47 Identities=28% Similarity=0.417 Sum_probs=23.5
Q ss_pred hchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHH------hhhhhcchhhhhhH
Q 012725 103 SLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEAL------AVKLTQNEGELIQE 156 (457)
Q Consensus 103 ~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaL------avqltqrE~ELiQe 156 (457)
.||.+ +|+||.-|.+.|. .-.|..--|++.+.- .++--|.|+|.+|-
T Consensus 422 rLE~d--vkkLraeLq~~Rq-----~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~ 474 (697)
T PF09726_consen 422 RLEAD--VKKLRAELQSSRQ-----SEQELRSQISSLTNNERSLKSELSQLRQENEQLQN 474 (697)
T ss_pred HHHHH--HHHHHHHHHhhhh-----hHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHH
Confidence 45555 4777777766553 122333333333321 23445566666665
No 138
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=32.89 E-value=6.1e+02 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=19.2
Q ss_pred cCCCCCCCCchhHHHHHhhcCCCeeeEEEEe
Q 012725 361 AGPIESAAGLGSYVETLLRKSSSEFNVVISQ 391 (457)
Q Consensus 361 ~GPidpAaGL~~yVEaL~rk~~tEFNVvi~Q 391 (457)
+|-|.| ..+|..+.|...||+-.|..
T Consensus 270 dgrihp-----~riee~~~~~~~~~~~~i~~ 295 (514)
T TIGR03319 270 DGRIHP-----ARIEEMVEKATKEVDNAIRE 295 (514)
T ss_pred cCCCCH-----HHHHHHHHHHHHHHHHHHHH
Confidence 566776 56788888888888776655
No 139
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=32.53 E-value=6.9e+02 Score=27.23 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHH
Q 012725 168 KQASEDAKKLVNQEKSFACAEIESAR 193 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~aEIE~AR 193 (457)
++|-.+|+....+.+..|..|+..-|
T Consensus 39 keA~~eAke~~ke~~~EaeeE~~~~R 64 (514)
T TIGR03319 39 EEAKKEAETLKKEALLEAKEEVHKLR 64 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433333333
No 140
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=32.43 E-value=3.7e+02 Score=24.94 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
.-|.+|...|+.|+++.++.|..+.+.+++..
T Consensus 90 ~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A 121 (181)
T PRK13454 90 KALADARAEAQRIVAETRAEIQAELDVAIAKA 121 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666655554443
No 141
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=31.90 E-value=5.8e+02 Score=26.71 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHH
Q 012725 179 NQEKSFACAEIESARAVVQRFG 200 (457)
Q Consensus 179 ~eERa~A~aEIE~ARAaV~Rve 200 (457)
.+|...|++....|+|.+..-.
T Consensus 150 ~~~~~~a~~a~~~A~A~~~~a~ 171 (352)
T COG1566 150 REELDRARAALQAAEAALAAAQ 171 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 6788888889999999887766
No 142
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=31.87 E-value=9.2e+02 Score=28.49 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=9.8
Q ss_pred ccccchHHHHHHHHHHHHHh
Q 012725 239 KVMDMEHELHALRTQIREKS 258 (457)
Q Consensus 239 KvMDME~El~~LR~ql~EKs 258 (457)
+..+|+.+|+.++..+.+..
T Consensus 885 ~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 885 EKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444443
No 143
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.72 E-value=8.1e+02 Score=30.25 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=18.4
Q ss_pred hchhHHHhhhHH-Hh-hhhhhhchhhHHH
Q 012725 84 KNLTAAAKLADE-AK-LRDVASLEGHVLL 110 (457)
Q Consensus 84 Kgl~~AakLs~E-aK-~reva~Ler~vLL 110 (457)
++|.-|+.++-- .+ || |--|++..+=
T Consensus 722 d~LeQAtRiaygk~rr~R-VvTL~G~lIe 749 (1293)
T KOG0996|consen 722 DNLEQATRIAYGKDRRWR-VVTLDGSLIE 749 (1293)
T ss_pred cCHHHHHHHhhcCCCceE-EEEecceeec
Confidence 466678888765 34 88 8888887653
No 144
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=31.33 E-value=2.7e+02 Score=26.11 Aligned_cols=20 Identities=15% Similarity=0.262 Sum_probs=10.5
Q ss_pred hhhhhhHHHHHHHHHHHHHH
Q 012725 150 EGELIQEKFEVKKLANFLKQ 169 (457)
Q Consensus 150 E~ELiQeK~EVkKlA~~lKq 169 (457)
+.++.+.+.+.+++..++++
T Consensus 77 ~~~~~~~~~~~~r~~~L~~~ 96 (322)
T TIGR01730 77 EAQLELAQRSFERAERLVKR 96 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHC
Confidence 33455555555555555544
No 145
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=30.94 E-value=2.3e+02 Score=30.05 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=57.5
Q ss_pred hchhHHHhhhHHHhhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhh-hhhHHHHHHH
Q 012725 84 KNLTAAAKLADEAKLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGE-LIQEKFEVKK 162 (457)
Q Consensus 84 Kgl~~AakLs~EaK~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~E-LiQeK~EVkK 162 (457)
+-+.+| +.+-+ +|+....-||.-+|.++.+.|+. ++|++...+++ .-|- +.+-+.|+..
T Consensus 40 ~Av~aA-~~a~~-~W~~~~~~eR~~iL~~~a~~l~~--------~~~ela~~~~~----------e~Gk~i~ea~~ei~~ 99 (472)
T COG1012 40 AAVAAA-RAAFE-AWSRLSAEERAAILRRIADLLEA--------RAEELAALITL----------ETGKPISEARGEIAR 99 (472)
T ss_pred HHHHHH-HHHHH-HhhhCCHHHHHHHHHHHHHHHHH--------hHHHHHHHHHH----------HcCCCHHHHHHHHHH
Confidence 334444 55555 89999999999999999999985 45665554443 2233 5666888999
Q ss_pred HHHHHHHhhHHHHHHHHH
Q 012725 163 LANFLKQASEDAKKLVNQ 180 (457)
Q Consensus 163 lA~~lKqASeDAkkiV~e 180 (457)
.+.++.-+-++|+++-.+
T Consensus 100 ~~~~~~~~a~~~~~~~~~ 117 (472)
T COG1012 100 AADFIRYYAEEARRLEGE 117 (472)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 999999999999876654
No 146
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=30.52 E-value=5.7e+02 Score=26.91 Aligned_cols=98 Identities=24% Similarity=0.260 Sum_probs=57.7
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHH---HhhHHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLK---QASEDAKKLVNQ 180 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lK---qASeDAkkiV~e 180 (457)
||-..+.++.-.+-++|+-| |-+ .+|++.+++ --+|.+--.++-+-++|.++++.-++ +..+|+..+.++
T Consensus 2 lD~k~ir~n~~~v~~~l~~R--~~~-~~vd~i~~l----d~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~ 74 (425)
T PRK05431 2 LDIKLIRENPEAVKEALAKR--GFP-LDVDELLEL----DEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE 74 (425)
T ss_pred CCHHHHHhCHHHHHHHHHhc--CCc-ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence 45455556666777788888 332 456655553 34444444444444555555555554 344566667666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012725 181 EKSFACAEIESARAVVQRFGEALEEEEKN 209 (457)
Q Consensus 181 ERa~A~aEIE~ARAaV~Rve~aleEqe~~ 209 (457)
-+. ...+|....+....+++.+.+.-..
T Consensus 75 ~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 75 VKE-LKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 653 4557777777777777777775544
No 147
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=30.50 E-value=99 Score=24.14 Aligned_cols=52 Identities=19% Similarity=0.158 Sum_probs=28.1
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecccccccccCCCCcccce
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISGASKLAYAPEPLDVGRV 344 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~ 344 (457)
.|....+....+.. .+.-.+.|||...+.....++..-....+ +.|..-+|+
T Consensus 5 ~G~~v~L~C~~~~~--~~~~~v~W~k~~~~~~~~~i~~~~~~~~~-~~~~~~~r~ 56 (105)
T cd00099 5 EGESVTLSCTYSGS--FSSYYIFWYRQKPGKGPELLIYISSNGSQ-YAGGVKGRF 56 (105)
T ss_pred CCCCEEEEEEEeCC--cCcceEEEEEECCCCCCEEEEEEeCCCCc-cCccCCCcE
Confidence 35555555443433 34558999999885455555544333333 344445553
No 148
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=30.23 E-value=1.7e+02 Score=33.28 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=28.9
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 012725 242 DMEHELHALRTQIREKSVLSLKIQKELAMNKR 273 (457)
Q Consensus 242 DME~El~~LR~ql~EKs~~~v~L~KEL~~~kr 273 (457)
-|+.+|.-|+..|.|+....-+|.++|+..++
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELRK 509 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999987773
No 149
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=30.09 E-value=1.9e+02 Score=30.83 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhcc
Q 012725 161 KKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLH 235 (457)
Q Consensus 161 kKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH 235 (457)
.-++..|+...+|. +++..+.|....+|||..++++..++.+ ..+.-.+.++++.+. |+..++
T Consensus 401 p~l~r~l~~~~~~~-----~~~e~~~a~~~~~~aa~~~l~~~~~~~~-----~~~~~~~~l~~~~~~--~~~~~~ 463 (525)
T TIGR00831 401 PIFVKRKFVSEHSE-----RELEEIIARYIAARSAKFALMKAVEQLR-----IVEPVARELLPELDA--RIEELR 463 (525)
T ss_pred HHHHHhcCCCCCCh-----hhHHHHHHHHHHHHHHHHHHHHHHhccC-----CCHHHHHHHHHHHHH--HHHHHH
Confidence 44555555444432 3455567778889999999987776653 123347788888773 555443
No 150
>PLN02678 seryl-tRNA synthetase
Probab=29.95 E-value=6.9e+02 Score=26.96 Aligned_cols=93 Identities=28% Similarity=0.209 Sum_probs=50.3
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 115 DALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 115 d~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
.+-++|+-|- -+.+.|++.+++ +.--.++.++=.+|-.++.++.|--.-+|...+|+..++++-+. -..||....+
T Consensus 17 ~v~~~l~~R~--~~~~~id~il~l-d~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~-Lk~ei~~le~ 92 (448)
T PLN02678 17 LIRESQRRRF--ASVELVDEVIAL-DKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKE-LKKEITEKEA 92 (448)
T ss_pred HHHHHHHhhC--CCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHHHHHHHH
Confidence 5666666663 233345555554 22233333333333334444333333334555677677766554 3468888888
Q ss_pred HHHHHHHHHHHHHhcCC
Q 012725 195 VVQRFGEALEEEEKNSP 211 (457)
Q Consensus 195 aV~Rve~aleEqe~~s~ 211 (457)
.+..+++.+.+.-....
T Consensus 93 ~~~~~~~~l~~~~~~iP 109 (448)
T PLN02678 93 EVQEAKAALDAKLKTIG 109 (448)
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 88888888877654433
No 151
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=29.61 E-value=69 Score=28.85 Aligned_cols=72 Identities=22% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCcchhHHHHHHHHHHHHhhhhcc--CCcccccchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012725 193 RAVVQRFGEALEEEEKN-SPKSKTQDVERLVDEIQEARRIKRLH--QPSKVMDMEHELHALRTQIREKSVLSLKIQKELA 269 (457)
Q Consensus 193 RAaV~Rve~aleEqe~~-s~~s~kqd~e~L~~EVqEARRIKmLH--~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~ 269 (457)
+++|+++=..|-++-.. ....|||-+=-...+ -+. .|....+|+.||..||.++.+-...+-.|+.||.
T Consensus 32 K~~v~k~Ld~L~~~g~i~~K~~GKqkiY~~~Q~--------~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 32 KTAVQKALDSLVEEGKIVEKEYGKQKIYFANQD--------ELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred HHHHHHHHHHHHhCCCeeeeeecceEEEeeCcc--------ccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777776666665544 556666511000000 011 2334667777888888888888888888888876
Q ss_pred Hhh
Q 012725 270 MNK 272 (457)
Q Consensus 270 ~~k 272 (457)
-..
T Consensus 104 ~L~ 106 (169)
T PF07106_consen 104 SLS 106 (169)
T ss_pred HHh
Confidence 444
No 152
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=29.60 E-value=7.4e+02 Score=26.68 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=29.0
Q ss_pred CCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHH
Q 012725 212 KSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIR 255 (457)
Q Consensus 212 ~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~ 255 (457)
....+.++++...+..-++.+.-|.|+ +.++-..+..++..|.
T Consensus 297 ~~dp~~L~ele~RL~~l~~LkrKyg~s-~e~l~~~~~~l~~eL~ 339 (563)
T TIGR00634 297 EFDPERLNEIEERLAQIKRLKRKYGAS-VEEVLEYAEKIKEELD 339 (563)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHH
Confidence 445678899999999999999999875 4444444444444433
No 153
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=29.43 E-value=3.2e+02 Score=22.38 Aligned_cols=48 Identities=23% Similarity=0.267 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhh
Q 012725 108 VLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQ 155 (457)
Q Consensus 108 vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQ 155 (457)
.++..|-++|+.-+--+...+-|++++.+.--+.+..++.+-|....+
T Consensus 15 ~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~ 62 (143)
T PF05130_consen 15 ELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQ 62 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777778888888888777777777776654444
No 154
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=29.39 E-value=1.2e+03 Score=28.97 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhh-----------------cchhhhhhHHHHHHH-HHHHHHH
Q 012725 108 VLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLT-----------------QNEGELIQEKFEVKK-LANFLKQ 169 (457)
Q Consensus 108 vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqlt-----------------qrE~ELiQeK~EVkK-lA~~lKq 169 (457)
...+.|++.++.+.|--.-.++|.|+++-.=.+-|+-.+. ....+|-.+..+.++ +.++-.+
T Consensus 885 ~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~ 964 (1293)
T KOG0996|consen 885 ARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEE 964 (1293)
T ss_pred HHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999999999988877777743332 222222222222221 1111111
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHH
Q 012725 170 ASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHA 249 (457)
Q Consensus 170 ASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~ 249 (457)
...+-.+.++ -..++.. .++++.|....++. -+++++.+.+.+.+-.+.+ +||++-|++
T Consensus 965 ~~~~~~k~~E-----~~~~~~e-------~~~~~~E~k~~~~~-~k~~~e~i~k~~~~lk~~r--------Id~~~K~e~ 1023 (1293)
T KOG0996|consen 965 LKGLEEKAAE-----LEKEYKE-------AEESLKEIKKELRD-LKSELENIKKSENELKAER--------IDIENKLEA 1023 (1293)
T ss_pred HhhhHHHHHH-----HHHHHHH-------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhh--------ccHHHHHHH
Confidence 2222222222 1222222 23344444333332 2446777777776655433 578999999
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 012725 250 LRTQIREKSVLSLKIQKEL 268 (457)
Q Consensus 250 LR~ql~EKs~~~v~L~KEL 268 (457)
.+.++.|--...-+..|.+
T Consensus 1024 ~~~~l~e~~~~~~~~~k~~ 1042 (1293)
T KOG0996|consen 1024 INGELNEIESKIKQPEKEL 1042 (1293)
T ss_pred HHHHHHHHHhhhhhHHHhh
Confidence 9998888777666666655
No 155
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=29.18 E-value=2.9e+02 Score=27.54 Aligned_cols=23 Identities=17% Similarity=0.333 Sum_probs=13.5
Q ss_pred hHHHhhcccchhhhHHhhhhchh
Q 012725 65 QLSEQHKRLSVRDLASKFDKNLT 87 (457)
Q Consensus 65 ~L~~q~kRLSVRDLA~KFEKgl~ 87 (457)
++.-+..-|.=|+++.+-.+-++
T Consensus 65 ~~~~~~e~L~Sr~~~~~v~~~l~ 87 (362)
T TIGR01010 65 DTYTVQEYMRSRDMLAALEKELP 87 (362)
T ss_pred cHHHHHHHHhhHHHHHHHHhcCC
Confidence 45555566666666666555444
No 156
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=29.14 E-value=1e+03 Score=28.27 Aligned_cols=65 Identities=18% Similarity=0.251 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhHHHhhcccchhhhHHhhhhchhHHHhhhHHHhhhhhhhchhhHHHHHHHHHHHHhhccc
Q 012725 55 LKEVVEKETVQLSEQHKRLSVRDLASKFDKNLTAAAKLADEAKLRDVASLEGHVLLKKLRDALEALRGRM 124 (457)
Q Consensus 55 lKEvVakEta~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLRd~LesLrGRv 124 (457)
.++-+..+-.++.++..++. +-....|+-|..+.+--++++. ++ =....-+++.+.-++.|+...
T Consensus 601 ~ee~L~~~l~~~~~~l~~~~--~~~~~~e~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 601 SEEELRERLEQAEDQLQSAE--ERQEELEKQLKQINKKIEELKR-EI--TQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred ChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHhhHHHHHHHHHHH
Confidence 45556666666666665543 3345566666554444444322 22 233445666666666665543
No 157
>PF11657 Activator-TraM: Transcriptional activator TraM
Probab=29.07 E-value=4.4e+02 Score=24.61 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=30.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhc
Q 012725 172 EDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRL 234 (457)
Q Consensus 172 eDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmL 234 (457)
+|||+..|+-.+.|.+....+.. +-+++..++--......-...+.++..-++++||+-++
T Consensus 64 ~dak~kAEkiL~aal~~ske~m~--~~l~e~~~~~~~avk~~i~~~~~~~~~~~~~~r~~a~~ 124 (144)
T PF11657_consen 64 EDAKEKAEKILNAALAASKEAMN--KILQESAQEIVEAVKSEIDNSLAEVNDLVREARKAAIL 124 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666555555554433321 11223333222222222233566677778888888664
No 158
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=28.89 E-value=3.8e+02 Score=25.66 Aligned_cols=102 Identities=27% Similarity=0.373 Sum_probs=57.5
Q ss_pred HhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcchhH
Q 012725 142 LAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKN---SPKSKTQDV 218 (457)
Q Consensus 142 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~---s~~s~kqd~ 218 (457)
+.-.+-..+.||..-+.++++ |++-++| |.+-+ |..-.-+++.+.+.++.-+.-+++-++. ...+-..++
T Consensus 87 ~~~klk~~~~el~k~~~~l~~----L~~L~~d-knL~e--ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql 159 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKH----LKKLSED-KNLAE--REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQL 159 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHc-CCchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444566677788888888877 4555443 34443 3344445555555554444443333332 333334455
Q ss_pred HHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHh
Q 012725 219 ERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKS 258 (457)
Q Consensus 219 e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs 258 (457)
-.-++.+.+|. ..+--++.||..|++.|.||-
T Consensus 160 ~~e~kK~~~~~--------~~~~~l~~ei~~L~~klkEKe 191 (194)
T PF15619_consen 160 ASEKKKHKEAQ--------EEVKSLQEEIQRLNQKLKEKE 191 (194)
T ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHh
Confidence 55555555554 234446678999999998885
No 159
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.71 E-value=8.2e+02 Score=27.96 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=8.3
Q ss_pred CCCChhHHHHHHHHH
Q 012725 125 AGRTKEDVEKAISLV 139 (457)
Q Consensus 125 aGrnKddVeeaismV 139 (457)
+|-..+=|+.|-.+.
T Consensus 497 ~Glp~~ii~~A~~~~ 511 (782)
T PRK00409 497 LGLPENIIEEAKKLI 511 (782)
T ss_pred hCcCHHHHHHHHHHH
Confidence 455566666665553
No 160
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=28.35 E-value=1.6e+02 Score=23.87 Aligned_cols=35 Identities=14% Similarity=0.321 Sum_probs=21.0
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecc
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISG 328 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 328 (457)
.|+...|...... +.-.+.|||..+...-.-|+..
T Consensus 12 ~G~~v~l~C~~~~----~~~~v~Wykq~~g~~~~~l~~~ 46 (110)
T cd05899 12 RGQSVTLRCSQTS----GHDNMYWYRQDPGKGLQLLFYS 46 (110)
T ss_pred CCCcEEEEEEECC----CCCEEEEEEECCCCCcEEEEEE
Confidence 4666666654333 3457999999985433334433
No 161
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=28.33 E-value=7.4e+02 Score=27.13 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=36.7
Q ss_pred cccccccccCCCC---cccceee-ee-ee--cCCcEEEEEecCCCCCCCCchhHHHHHhhcCCCeeeEEE
Q 012725 327 SGASKLAYAPEPL---DVGRVLQ-AD-IL--SNGQKITVTSAGPIESAAGLGSYVETLLRKSSSEFNVVI 389 (457)
Q Consensus 327 sGAtk~~YAPEP~---DVGr~Lq-ad-I~--~~G~k~~~~T~GPidpAaGL~~yVEaL~rk~~tEFNVvi 389 (457)
+|-+-|+.-=+|| |--+.-. ++ ++ ...|.+.++|+.-|++ .|.+.|-..-+-+|.++-
T Consensus 572 ~~~~~p~iiD~p~~~lD~~~r~~l~~~~~~~~~~QvIils~d~e~~~-----~~~~~l~~~i~~~y~l~y 636 (650)
T TIGR03185 572 SGRRLPVIIDTPLGRLDSSHRENLVVNYFPKASHQVLLLSTDEEVDE-----KHYNLLKPNISHEYLLEF 636 (650)
T ss_pred cCCCCCEEEcCCccccChHHHHHHHHHHhhccCCeEEEEechHhhCH-----HHHHHHHHHhhhheEEEe
Confidence 5656677777887 4333111 21 22 3578888888888884 577777666677776664
No 162
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.17 E-value=9.4e+02 Score=27.46 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 012725 152 ELIQEKFEVKKLANFLKQASEDAKKLVN 179 (457)
Q Consensus 152 ELiQeK~EVkKlA~~lKqASeDAkkiV~ 179 (457)
+.-||-.++..+-+-.+.-++.|.+|.+
T Consensus 573 ~~e~Ql~~L~~l~e~~~~l~~~ae~Lae 600 (717)
T PF10168_consen 573 QKEQQLKELQELQEERKSLRESAEKLAE 600 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777777777777777777765
No 163
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=28.11 E-value=2.8e+02 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEE 205 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleE 205 (457)
....+|...|...++.+|+-+..+++.+.+.+....+.++.
T Consensus 73 ~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (120)
T PF11740_consen 73 RLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEE 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666665555544444443
No 164
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=27.95 E-value=1e+03 Score=27.73 Aligned_cols=155 Identities=27% Similarity=0.334 Sum_probs=79.7
Q ss_pred hHHHHHHHHHhHHHhhcccc-------hhhhHHhhhhchhHHHhhhHH-Hhhhhhhhchhh-------HHHHHHHHHHHH
Q 012725 55 LKEVVEKETVQLSEQHKRLS-------VRDLASKFDKNLTAAAKLADE-AKLRDVASLEGH-------VLLKKLRDALEA 119 (457)
Q Consensus 55 lKEvVakEta~L~~q~kRLS-------VRDLA~KFEKgl~~AakLs~E-aK~reva~Ler~-------vLLKkLRd~Les 119 (457)
|-+.+....-+|..-.-||+ ...+..+.|+++.---++-+. -..|+=+.-|+. --++.|+.-+++
T Consensus 404 Lee~l~ekd~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~ 483 (775)
T PF10174_consen 404 LEEQLREKDRQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLES 483 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666766 455667777777644333332 011111222221 234555555555
Q ss_pred hhcccCCCC------hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHH-----HHHHhhhhhHHH
Q 012725 120 LRGRMAGRT------KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKK-----LVNQEKSFACAE 188 (457)
Q Consensus 120 LrGRvaGrn------KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk-----iV~eERa~A~aE 188 (457)
|.+.+.-+. ++++..-.|--+=---.+.+-+.++-+.+.++.||-+-++.+-.+++. .++.+=+-...+
T Consensus 484 LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~~e~~~r~~~Le~ev~~~~ee 563 (775)
T PF10174_consen 484 LQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRANAELRDRIQQLEQEVTRYREE 563 (775)
T ss_pred HhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHhhcchHHHHHHHHHHHHHH
Confidence 555544433 222211111111111123344567777777888888877774444432 344444444557
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 012725 189 IESARAVVQRFGEALEEEEKN 209 (457)
Q Consensus 189 IE~ARAaV~Rve~aleEqe~~ 209 (457)
.+.|++=|-|+-.+|++-++.
T Consensus 564 ~~kaq~EVERLl~~L~~~E~E 584 (775)
T PF10174_consen 564 SEKAQAEVERLLDILREAENE 584 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777665543
No 165
>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.
Probab=27.86 E-value=1.6e+02 Score=24.75 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHh
Q 012725 110 LKKLRDALEALRGRMAGRTKEDVEKAISLVEALA 143 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGrnKddVeeaismVEaLa 143 (457)
.||+|-++.-+||+ .|++|+...+..-
T Consensus 12 ~kK~~~v~~~Irg~-------~v~~A~~~L~~~~ 38 (105)
T cd00336 12 PKKARLVARLIRGM-------SVDEALAQLEFVP 38 (105)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHhCC
Confidence 68999999999986 5788888877654
No 166
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=27.75 E-value=2e+02 Score=25.68 Aligned_cols=59 Identities=29% Similarity=0.413 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHh
Q 012725 189 IESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKS 258 (457)
Q Consensus 189 IE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs 258 (457)
++.|++.+=.|...+.+- ...+.++.++.++.++.+ ....++.++.++..+..++.+-.
T Consensus 5 l~EA~~lLP~l~~~~~~~-----~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~i 63 (120)
T PF09969_consen 5 LEEANALLPLLRPILEEI-----RELKAELEELEERLQELE------DSLEVNGLEAELEELEARLRELI 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcc------chhhHHhHHHHHHHHHHHHHHHH
Confidence 466777777777777654 233445666555555443 33367777777777777776543
No 167
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=27.60 E-value=4.4e+02 Score=23.46 Aligned_cols=24 Identities=46% Similarity=0.444 Sum_probs=11.5
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIE 190 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE 190 (457)
|.+|...|+.|+++.+..|..+.+
T Consensus 66 l~~a~~ea~~ii~~a~~~a~~~~~ 89 (159)
T PRK13461 66 LKNAKEEGKKIVEEYKSKAENVYE 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555544444433
No 168
>PRK03918 chromosome segregation protein; Provisional
Probab=27.59 E-value=8.7e+02 Score=26.86 Aligned_cols=40 Identities=28% Similarity=0.368 Sum_probs=16.8
Q ss_pred HHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhh
Q 012725 115 DALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELI 154 (457)
Q Consensus 115 d~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELi 154 (457)
.-+++|..++.+-+..++++-..=.+.+--++.+-+.++-
T Consensus 503 ~~~~~l~~~l~~~~~~~l~~~~~~~~~l~~~~~~l~~~l~ 542 (880)
T PRK03918 503 EQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIK 542 (880)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344444444333444444444444444444444443333
No 169
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=27.51 E-value=4.5e+02 Score=23.52 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=11.9
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEI 189 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEI 189 (457)
-|.+|...|+.|+++.|..|..+.
T Consensus 68 ~l~~A~~ea~~ii~~A~~~a~~~~ 91 (164)
T PRK14473 68 ELAKARQEAAKIVAQAQERARAQE 91 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555544443
No 170
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=27.50 E-value=97 Score=27.87 Aligned_cols=19 Identities=42% Similarity=0.532 Sum_probs=14.8
Q ss_pred HHhhhhccCCcccccchHHHHHHHHHHH
Q 012725 228 ARRIKRLHQPSKVMDMEHELHALRTQIR 255 (457)
Q Consensus 228 ARRIKmLH~PSKvMDME~El~~LR~ql~ 255 (457)
.|||||| |+.|+..|..+.
T Consensus 52 ~rrIkML---------E~aLkqER~k~~ 70 (134)
T PF08232_consen 52 KRRIKML---------EYALKQERAKYK 70 (134)
T ss_pred HHHHHHH---------HHHHHHHHHHhh
Confidence 6999998 888877776553
No 171
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=27.37 E-value=70 Score=26.92 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=19.7
Q ss_pred cceeeEeeCCCCCCCCC-CceeeEEEeeeCCCcccee
Q 012725 291 GSHLRIRPRSDTAPSLS-KCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 291 GS~L~i~~~~d~~~dlS-kcsiQWyRv~~~gsk~E~I 326 (457)
|+...|...-...+.++ +-.|+||+....++..+.|
T Consensus 13 G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v 49 (115)
T cd05880 13 GTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESV 49 (115)
T ss_pred CCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEE
Confidence 55555443322223333 4579999987666655444
No 172
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=27.02 E-value=1e+03 Score=27.61 Aligned_cols=45 Identities=27% Similarity=0.423 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 185 ACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 185 A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
|...+|.|.+--.|+.+.|+++-..+..-..++++.+++|+++.+
T Consensus 434 ~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk 478 (775)
T PF10174_consen 434 ALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELK 478 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999998866655555678888888888765
No 173
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR002321 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins []. This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein []. The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core []. The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0005746 mitochondrial respiratory chain; PDB: 1BBH_A 2J9B_B 2J8W_A 1JAF_B 3ZTM_A 2XLD_A 2XL6_A 1E86_A 2YLD_A 2YKZ_A ....
Probab=26.98 E-value=3.9e+02 Score=22.63 Aligned_cols=94 Identities=18% Similarity=0.283 Sum_probs=69.5
Q ss_pred hchhhHHHHHHHHHHHHhhcccCCCC---hhHHHHHHHHHHHHhhhhh-------------cchhhhhhHHHHHHHHHHH
Q 012725 103 SLEGHVLLKKLRDALEALRGRMAGRT---KEDVEKAISLVEALAVKLT-------------QNEGELIQEKFEVKKLANF 166 (457)
Q Consensus 103 ~Ler~vLLKkLRd~LesLrGRvaGrn---KddVeeaismVEaLavqlt-------------qrE~ELiQeK~EVkKlA~~ 166 (457)
.=.|+-+.|.+...+..|.+=+-|.. .+.|..+...+..++-.+- .-=.+.-++..+.+.++.-
T Consensus 4 v~~Rq~~m~~~~~~~~~l~~~~~g~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~s~A~~~Iw~~~~~F~~~~~~ 83 (122)
T PF01322_consen 4 VKARQAAMKAIGANMKALGAMLKGEKPFDAAAVAAAADALAALAKSLPDHFPEGSDGGDGSEAKPEIWEDPEDFKQLAQA 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSST-SHHHHHHHHHHHHHHHTSGGGGGSTTCSSTTSSSBSTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhhhhhCCCCCCCCccccccHHHHhCHHHHHHHHHH
Confidence 34688899999999999999999984 6788888888888775442 2222356778888999998
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEA 202 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~a 202 (457)
|..|..+....+... -.+..++++.+|++.
T Consensus 84 ~~~aa~~L~~aa~~~------d~~~~~~a~~~v~~~ 113 (122)
T PF01322_consen 84 FQKAAAALAAAAKSG------DLAAIKAAFGEVGKS 113 (122)
T ss_dssp HHHHHHHHHHHHHHT------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC------CHHHHHHHHHHHHHH
Confidence 888888776655322 356777777777765
No 174
>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]
Probab=26.74 E-value=2.1e+02 Score=25.83 Aligned_cols=40 Identities=28% Similarity=0.362 Sum_probs=25.9
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARA-VVQRFGEALEEE 206 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARA-aV~Rve~aleEq 206 (457)
..+|-++++++|.+.|..|+-.|+.|-. |....++.|++.
T Consensus 23 IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~ 63 (108)
T COG2811 23 IEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEA 63 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888877777643 334444444443
No 175
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=26.55 E-value=5e+02 Score=28.01 Aligned_cols=96 Identities=33% Similarity=0.428 Sum_probs=56.9
Q ss_pred HHHHHHHhhcccC------CCChhHHHHHHHHHHHHhhhhhcchhhh--hhHH-----HHHHHHHHHHHHhhHHH---HH
Q 012725 113 LRDALEALRGRMA------GRTKEDVEKAISLVEALAVKLTQNEGEL--IQEK-----FEVKKLANFLKQASEDA---KK 176 (457)
Q Consensus 113 LRd~LesLrGRva------GrnKddVeeaismVEaLavqltqrE~EL--iQeK-----~EVkKlA~~lKqASeDA---kk 176 (457)
|++..++|+.-+. .+.++....+-+.|.-|..+|++=-.+| .+.. .....|..-|+|++.+| |+
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ 386 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKK 386 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555441 2233344556667777777776544444 3322 23556888888888766 44
Q ss_pred H---HHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHh
Q 012725 177 L---VNQEKSFACAEIESARAVVQ----RFGEALEEEEK 208 (457)
Q Consensus 177 i---V~eERa~A~aEIE~ARAaV~----Rve~aleEqe~ 208 (457)
. +.+|...++.|+|.+++++. |++.+++|-+.
T Consensus 387 ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 387 EAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34566778888888888775 44445554443
No 176
>KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair]
Probab=26.44 E-value=68 Score=32.47 Aligned_cols=44 Identities=27% Similarity=0.403 Sum_probs=33.5
Q ss_pred HhHHHhhcccchhhhHHhhhhchhHHHhhhHHHhhhhhhhchhhHHHHHHHHHHHHhhcccCCCCh
Q 012725 64 VQLSEQHKRLSVRDLASKFDKNLTAAAKLADEAKLRDVASLEGHVLLKKLRDALEALRGRMAGRTK 129 (457)
Q Consensus 64 a~L~~q~kRLSVRDLA~KFEKgl~~AakLs~EaK~reva~Ler~vLLKkLRd~LesLrGRvaGrnK 129 (457)
..|++...-++|||||-+| |+.-+++-+.+ +|.+.+||++---.
T Consensus 85 e~llgln~~~~VrdlaVQf--gc~evi~~a~~--------------------vl~syk~~lpaT~~ 128 (262)
T KOG4557|consen 85 ENLLGLNIKLNVRDLAVQF--GCVEVIKSAQN--------------------VLSSYKERLPATRR 128 (262)
T ss_pred HHHhcchhhcCHHHHHHHH--hHHHHHHHHHH--------------------HHHHHHhcCchhhh
Confidence 4688999999999999999 66666555544 67888898765433
No 177
>KOG1772 consensus Vacuolar H+-ATPase V1 sector, subunit G [Energy production and conversion]
Probab=26.39 E-value=3.2e+02 Score=24.89 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQ 226 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVq 226 (457)
.-||||-++|.+-|++=|+. -++.+++.+....-+.-....++.++++
T Consensus 31 ~RLKQAKeEA~~Eie~yr~q--------------rE~efk~ke~~~~G~~~~~~~~~e~~t~ 78 (108)
T KOG1772|consen 31 RRLKQAKEEAEKEIEEYRSQ--------------REKEFKEKESAASGSQGALEKRLEQETD 78 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHhccchhhHHHHHHHHH
Confidence 45677777776666555543 3444555544433333334445555544
No 178
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=26.30 E-value=5.9e+02 Score=24.50 Aligned_cols=8 Identities=0% Similarity=0.214 Sum_probs=3.1
Q ss_pred hHHHHHHH
Q 012725 217 DVERLVDE 224 (457)
Q Consensus 217 d~e~L~~E 224 (457)
+++..+.+
T Consensus 147 ~~~~a~~~ 154 (334)
T TIGR00998 147 ELDHARKA 154 (334)
T ss_pred HHHHHHHH
Confidence 44433333
No 179
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=26.15 E-value=4.4e+02 Score=23.22 Aligned_cols=56 Identities=29% Similarity=0.345 Sum_probs=35.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 012725 150 EGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNS 210 (457)
Q Consensus 150 E~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s 210 (457)
|.||..--..++.|..+=+++++ +..+....+++.++|++.+...+..++++....
T Consensus 48 E~El~~Ha~~~~~L~~lr~e~~~-----~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~l 103 (132)
T PF07926_consen 48 ERELVKHAEDIKELQQLREELQE-----LQQEINELKAEAESAKAELEESEASWEEQKEQL 103 (132)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 56666666666666554333332 334556677788888888877777777776543
No 180
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=26.07 E-value=7.6e+02 Score=25.67 Aligned_cols=11 Identities=9% Similarity=0.145 Sum_probs=6.8
Q ss_pred Eeeccceeeee
Q 012725 413 KLCRGWITNLE 423 (457)
Q Consensus 413 KL~KG~~t~Ak 423 (457)
+|.-|.+..+.
T Consensus 427 ~L~pGM~a~v~ 437 (457)
T TIGR01000 427 LIRYGLTGKIS 437 (457)
T ss_pred ccCCCCEEEEE
Confidence 45666666665
No 181
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=25.38 E-value=2.9e+02 Score=27.74 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 012725 183 SFACAEIESARAVVQRFGEALEEEEKNSPKSK 214 (457)
Q Consensus 183 a~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~ 214 (457)
..|++++++|++.+...+..|...+-.+..+|
T Consensus 149 ~~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dG 180 (385)
T PRK09578 149 RQAKAAVASAKAELARAQLQLDYATVTAPIDG 180 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCEEECCCCe
Confidence 34667777777777766666654444444444
No 182
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=25.26 E-value=3.9e+02 Score=24.34 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=7.7
Q ss_pred HHhhHHHHHHHHHhhhhhHH
Q 012725 168 KQASEDAKKLVNQEKSFACA 187 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~a 187 (457)
.+|-.+|.++.++.+..|..
T Consensus 34 ~ea~~~a~~i~~~~~~~a~~ 53 (188)
T PRK02292 34 AEAEADAEEILEDREAEAER 53 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333333333
No 183
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=25.15 E-value=46 Score=31.68 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=16.8
Q ss_pred ccCCCChhHHHHHHHHHH
Q 012725 123 RMAGRTKEDVEKAISLVE 140 (457)
Q Consensus 123 RvaGrnKddVeeaismVE 140 (457)
||.|+.+||.-++|+++-
T Consensus 129 RVtgKkrDDLQ~viallk 146 (161)
T PRK05412 129 RVTGKKRDDLQAVIALLR 146 (161)
T ss_pred EEecCCHhHHHHHHHHHH
Confidence 999999999999999974
No 184
>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.
Probab=25.02 E-value=1.1e+02 Score=29.32 Aligned_cols=48 Identities=25% Similarity=0.535 Sum_probs=34.7
Q ss_pred eeEeeCCCCCCCCCCceeeEEEeeeCCCccceecccccccccCCCCcc--cceeeeeeecC
Q 012725 294 LRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISGASKLAYAPEPLDV--GRVLQADILSN 352 (457)
Q Consensus 294 L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DV--Gr~LqadI~~~ 352 (457)
.+..|..+.+.|+.-.+|+|. +++ .|+. .|+|-+.|- |.+|.|+|..+
T Consensus 48 v~~~p~~~~~~Diry~~ir~~--~~~-------~~~~--~~gps~~dPrTGeIl~a~V~l~ 97 (197)
T cd04276 48 VKVLPDDADPGDIRYNVIRWI--HSP-------NGGW--AYGPSVVDPRTGEILKADVILY 97 (197)
T ss_pred EEeCCCCcCcccceEEEEEEE--ecC-------CCcc--eecccccCCCCCCeEEEEEEeC
Confidence 344455555679999999997 221 2332 689999997 99999999854
No 185
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.01 E-value=5.7e+02 Score=28.06 Aligned_cols=120 Identities=27% Similarity=0.321 Sum_probs=69.1
Q ss_pred hchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHH-HHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 012725 103 SLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAIS-LVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQE 181 (457)
Q Consensus 103 ~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeais-mVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eE 181 (457)
+-+-...|++|.++|..++.....-...+..+-++ ..+||.--|.-- +.|+.+++.|.+- .++.++-
T Consensus 311 L~~A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~-----------~al~~l~~l~~~~-~~~~~~~ 378 (464)
T COG0215 311 LEEAKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTP-----------KALAVLFELAKEI-NRLLEEG 378 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcH-----------HHHHHHHHHHHHH-hhhhhcc
Confidence 33445578899999998886655544324444443 777777666543 4456666666554 3344433
Q ss_pred hhhhHHHHHHHHHHHHHHH-HHHHHHHhc-C--CCCcchhHHHHHHHHHHHHhhhhc
Q 012725 182 KSFACAEIESARAVVQRFG-EALEEEEKN-S--PKSKTQDVERLVDEIQEARRIKRL 234 (457)
Q Consensus 182 Ra~A~aEIE~ARAaV~Rve-~aleEqe~~-s--~~s~kqd~e~L~~EVqEARRIKmL 234 (457)
.+.+.+-...+.+...-++ +.|....+. . ......+++.|.++-++||.-|..
T Consensus 379 ~~~~~~~~~~~~~~~~~lg~~~l~~~~~~~~~~~~~~~~~i~~Li~~R~~aR~~K~~ 435 (464)
T COG0215 379 KSDAKAVLSALKALLAILGLKVLGLFPQSGAQEDESDDEEIEALIEERLEARKAKNW 435 (464)
T ss_pred ccchHHHHHHHHHHHHHhCchhhccccccccccccchHHHHHHHHHHHHHHHHhhCH
Confidence 3333444444444444444 344433332 1 122556899999999999987543
No 186
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=24.81 E-value=6.7e+02 Score=24.60 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Q 012725 217 DVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKELAMNKRAE 275 (457)
Q Consensus 217 d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~~~kr~e 275 (457)
+-+.|..++.++ +-+|..|+.....|..+..+|+++|...+...
T Consensus 76 Ek~~Le~e~~e~---------------~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~ 119 (246)
T PF00769_consen 76 EKEQLEQELREA---------------EAEIARLEEESERKEEEAEELQEELEEAREDE 119 (246)
T ss_dssp -----HHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666665 45788899999999999999999998766644
No 187
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.81 E-value=9.5e+02 Score=26.34 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCC-cchhHHHHHHHHHHHHh
Q 012725 184 FACAEIESARAVVQRFGEALEEEEKNSPKS-KTQDVERLVDEIQEARR 230 (457)
Q Consensus 184 ~A~aEIE~ARAaV~Rve~aleEqe~~s~~s-~kqd~e~L~~EVqEARR 230 (457)
....++...+.-...++.-|.+-++....+ ..+++..|.++..++.+
T Consensus 388 ~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~ 435 (650)
T TIGR03185 388 ELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQN 435 (650)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 445667777777777888887777765444 44677777777776653
No 188
>CHL00034 rpl22 ribosomal protein L22
Probab=24.68 E-value=1.8e+02 Score=25.80 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh
Q 012725 108 VLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFA 185 (457)
Q Consensus 108 vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 185 (457)
+=-||+|-++..+||+ .|.+|+...+..- |.|+..-+|+++...+||
T Consensus 19 ~SpkK~r~va~~IRG~-------~v~~A~~~L~~~p------------------------kk~a~~i~klL~sA~aNA 65 (117)
T CHL00034 19 MSAHKARRVIDQIRGR-------SYEEALMILEFMP------------------------YRACYPILKLVYSAAANA 65 (117)
T ss_pred cCHHHHHHHHHHHcCC-------cHHHHHHHHHHCc------------------------HHHHHHHHHHHHHHHHHH
Confidence 3358999999999986 5888998877522 566777777777777777
No 189
>PF06670 Etmic-2: Microneme protein Etmic-2; InterPro: IPR009556 This family consists of several Microneme protein Etmic-2 sequences from Eimeria tenella. Etmic-2 is a 50 kDa acidic protein, which is found within the microneme organelles of E. tenella sporozoites and merozoites [].
Probab=24.64 E-value=2e+02 Score=29.91 Aligned_cols=71 Identities=24% Similarity=0.390 Sum_probs=44.6
Q ss_pred eCCCCCCCCCCceeeEEEeeeCCCccceecccccccccCCCCcccceeeeeeecCCcEEEEEecCCCCCCCCchhHHHHH
Q 012725 298 PRSDTAPSLSKCSIQWYRVSLDGSQKEIISGASKLAYAPEPLDVGRVLQADILSNGQKITVTSAGPIESAAGLGSYVETL 377 (457)
Q Consensus 298 ~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~~G~k~~~~T~GPidpAaGL~~yVEaL 377 (457)
|..++.-+-....|--.||+-.|+ .+---+|.| -+.+-|.-++.-|.=|+|.+||
T Consensus 148 ~~~eg~~e~psvpli~vri~gs~~--------~~ges~p~~---------avl~yg~~es~p~e~pl~t~ag-------- 202 (379)
T PF06670_consen 148 PKGEGGQEKPSVPLIAVRIHGSGG--------DKGESAPQS---------AVLLYGNDESEPTEVPLETAAG-------- 202 (379)
T ss_pred cCCCCCccCCCCceEEEEecCCCC--------CccccCCCc---------eEEEecCCCCCCccccccCCCC--------
Confidence 333333344445566678874222 233334544 1344556667778899999999
Q ss_pred hhcCCCeeeEEEEeecCCc
Q 012725 378 LRKSSSEFNVVISQMNGQD 396 (457)
Q Consensus 378 ~rk~~tEFNVvi~Q~NG~d 396 (457)
+-+-|-|+|.|.|-..
T Consensus 203 ---pttp~mv~i~q~~p~e 218 (379)
T PF06670_consen 203 ---PTTPLMVLITQQNPKE 218 (379)
T ss_pred ---CCCceEEEEecCCCce
Confidence 5789999999998543
No 190
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=24.51 E-value=1.1e+03 Score=27.71 Aligned_cols=105 Identities=23% Similarity=0.339 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHH-
Q 012725 112 KLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIE- 190 (457)
Q Consensus 112 kLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE- 190 (457)
-||.++.-|..- ++.++..+.....=.+|+.+ .+|-|.--...++..-.-|++|-++ --...||+
T Consensus 462 ~Lr~a~~rL~~a---~~~~~l~~v~~~LW~lAl~i--EdG~ls~A~~~Lr~AQ~aL~eAL~~---------gAsdeEI~~ 527 (851)
T TIGR02302 462 GLYTIRTRLERA---RTDDALRDVADNLWSLALGI--EDGDLSDAERRLRAAQDALKDALER---------GASDEEIKQ 527 (851)
T ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHHHHHHc---------CCCHHHHHH
Confidence 578887777765 88888888777776777766 5677766555555444444444321 11233443
Q ss_pred ---HHHHHHHHHHHHHHHHHhc------------CCCCcchhHHHHHHHHHHHHh
Q 012725 191 ---SARAVVQRFGEALEEEEKN------------SPKSKTQDVERLVDEIQEARR 230 (457)
Q Consensus 191 ---~ARAaV~Rve~aleEqe~~------------s~~s~kqd~e~L~~EVqEARR 230 (457)
.-|.|.+..=.+|.|+-.. ++.-..+|++.|++.|||.-|
T Consensus 528 Lm~eLR~Am~~ym~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~ 582 (851)
T TIGR02302 528 LTDKLRAAMQTYMRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLAR 582 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHH
Confidence 3466777776666665442 223456689999999987644
No 191
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=24.45 E-value=4.9e+02 Score=22.92 Aligned_cols=72 Identities=22% Similarity=0.295 Sum_probs=39.1
Q ss_pred chhhhhhHHHHHHHHH-HHHHHhhHHHHHHHHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHH
Q 012725 149 NEGELIQEKFEVKKLA-NFLKQASEDAKKLVNQEKSFACAEIESAR-AVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQ 226 (457)
Q Consensus 149 rE~ELiQeK~EVkKlA-~~lKqASeDAkkiV~eERa~A~aEIE~AR-AaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVq 226 (457)
++||+.++.+ ++++ .+++.+.+.++..+++-+..|+...+.-. +.-.+|..+|.. .-...+.|++.|.+.|.
T Consensus 33 kkGe~~~ee~--k~~~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~----lg~~tk~ev~~L~~RI~ 106 (118)
T TIGR01837 33 KEGELAEKRG--QKRFDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNR----LNIPSREEIEALSAKIE 106 (118)
T ss_pred HhccccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHH
Confidence 5677777643 3433 34455667777777777665554332221 233344444433 33444567777766554
No 192
>PRK10404 hypothetical protein; Provisional
Probab=24.34 E-value=3.3e+02 Score=23.75 Aligned_cols=44 Identities=14% Similarity=0.167 Sum_probs=35.3
Q ss_pred HHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 163 LANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 163 lA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
+..+|+.++++++.=+++-|+.+.+-++.||+.....+..+.++
T Consensus 21 le~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~ 64 (101)
T PRK10404 21 LEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYR 64 (101)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45567888889999999999999999999998777776655554
No 193
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=24.25 E-value=72 Score=34.79 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.9
Q ss_pred cchHHHHHHHHHH
Q 012725 242 DMEHELHALRTQI 254 (457)
Q Consensus 242 DME~El~~LR~ql 254 (457)
+||.|+..|+.|+
T Consensus 108 eLEaE~~~Lk~Ql 120 (475)
T PRK13729 108 KLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 7888888888887
No 194
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.13 E-value=6.5e+02 Score=24.38 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=22.9
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhc
Q 012725 243 MEHELHALRTQIREKSVLSLKIQKELAMNKRAE 275 (457)
Q Consensus 243 ME~El~~LR~ql~EKs~~~v~L~KEL~~~kr~e 275 (457)
++.|.+.|++++.+-....-.|.-|++..++..
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~ 169 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI 169 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888776666666666666555443
No 195
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.94 E-value=1.1e+03 Score=26.96 Aligned_cols=70 Identities=34% Similarity=0.276 Sum_probs=59.5
Q ss_pred HHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhH------------HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 139 VEALAVKLTQNEGELIQEKFEVKKLANFLKQASE------------DAKKLVNQEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 139 VEaLavqltqrE~ELiQeK~EVkKlA~~lKqASe------------DAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
.+-+--.|.-+|.-|-|.|.|.-||-.-||+|-+ |-.+=|+.|++.-+-|.-.|+|-|-|.-+.|.|-
T Consensus 375 glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLeilkev 454 (654)
T KOG4809|consen 375 GLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEILKEV 454 (654)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999999999999999999843 4457789999999999999999999999999886
Q ss_pred Hh
Q 012725 207 EK 208 (457)
Q Consensus 207 e~ 208 (457)
++
T Consensus 455 en 456 (654)
T KOG4809|consen 455 EN 456 (654)
T ss_pred Hh
Confidence 64
No 196
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=23.94 E-value=3.2e+02 Score=27.72 Aligned_cols=59 Identities=22% Similarity=0.217 Sum_probs=29.4
Q ss_pred hhhhHHHHHHHHHHHHHH--hh----HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 012725 152 ELIQEKFEVKKLANFLKQ--AS----EDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSK 214 (457)
Q Consensus 152 ELiQeK~EVkKlA~~lKq--AS----eDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~ 214 (457)
+|.+.+.+.++.-+++++ .| ++|+. +...|+++++.|+|.+...+..|+...-.+..+|
T Consensus 118 ~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~----~~~~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG 182 (397)
T PRK15030 118 AANIAQLTVNRYQKLLGTQYISKQEYDQALA----DAQQANAAVTAAKAAVETARINLAYTKVTSPISG 182 (397)
T ss_pred HHHHHHHHHHHHHHHHHCCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCCEEEcCCCe
Confidence 344455566666666554 22 22221 2233556677777766666555554433344333
No 197
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=23.80 E-value=1e+03 Score=26.31 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCC-c-chhHHHHHHHHHHHHh
Q 012725 185 ACAEIESARAVVQRFGEALEEEEKNSPKS-K-TQDVERLVDEIQEARR 230 (457)
Q Consensus 185 A~aEIE~ARAaV~Rve~aleEqe~~s~~s-~-kqd~e~L~~EVqEARR 230 (457)
..++++.|++-...++..+.+.+...... . .+++..|..|++-+|-
T Consensus 343 ~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~ 390 (754)
T TIGR01005 343 LLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQ 390 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHH
Confidence 35566677776666666666655442222 2 2367777777766553
No 198
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=23.72 E-value=6e+02 Score=23.62 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH----Hhhhhcc
Q 012725 160 VKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEA----RRIKRLH 235 (457)
Q Consensus 160 VkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEA----RRIKmLH 235 (457)
|+--+|.+=-.-||..+|+++.=..+...|..|+.+|.++-..-...++-...... .++.+.+..+.| +-=--..
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~-~~~~~~~~A~~Al~~g~edLAr~ 88 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEE-EAEKWEKQAELALAAGREDLARE 88 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHH
Q ss_pred CCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 012725 236 QPSKVMDMEHELHALRTQIREKSVLSLKIQKELAMNKR 273 (457)
Q Consensus 236 ~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~~~kr 273 (457)
.=.+..+.+.++..|..++.+-.....+|+..|...+.
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~ 126 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEA 126 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 199
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=23.63 E-value=8e+02 Score=25.06 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 012725 245 HELHALRTQIREKSVLSLKIQKEL 268 (457)
Q Consensus 245 ~El~~LR~ql~EKs~~~v~L~KEL 268 (457)
.++..++.++.+--.....++.+|
T Consensus 227 ~~~~~~~~~l~~~~~~l~~~~~~l 250 (421)
T TIGR03794 227 KELETVEARIKEARYEIEELENKL 250 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777766666666666665
No 200
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=23.61 E-value=6.7e+02 Score=24.16 Aligned_cols=19 Identities=16% Similarity=0.504 Sum_probs=8.0
Q ss_pred hhhhhHHHHHHHHHHHHHH
Q 012725 151 GELIQEKFEVKKLANFLKQ 169 (457)
Q Consensus 151 ~ELiQeK~EVkKlA~~lKq 169 (457)
..+-+-+.+..+.-+++++
T Consensus 122 ~~l~~a~~~~~r~~~L~~~ 140 (334)
T TIGR00998 122 EKLLQAELDLRRRVPLFKK 140 (334)
T ss_pred HHHHHhHHHHHHHHHHHHC
Confidence 3333344444444444443
No 201
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=23.49 E-value=6.2e+02 Score=24.85 Aligned_cols=88 Identities=9% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch-hH
Q 012725 140 EALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQ-DV 218 (457)
Q Consensus 140 EaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kq-d~ 218 (457)
+..+-.|..-|.-..+-+.....--.-++.|...|..|+++.+..|..+.+...+..+.=-+.+.++-+..-..+++ -+
T Consensus 39 ~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~ 118 (250)
T PRK14474 39 QRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFF 118 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 012725 219 ERLVDEIQE 227 (457)
Q Consensus 219 e~L~~EVqE 227 (457)
.+|+++|-.
T Consensus 119 ~~L~~~v~~ 127 (250)
T PRK14474 119 KALQQQTGQ 127 (250)
T ss_pred HHHHHHHHH
No 202
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=23.43 E-value=5.3e+02 Score=26.40 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=0.0
Q ss_pred HhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--CCCCcchhHH
Q 012725 142 LAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKN--SPKSKTQDVE 219 (457)
Q Consensus 142 LavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~--s~~s~kqd~e 219 (457)
+..++.|-+.+|.+.+.....+..-.+ .++++|+.|++.+...+.-++-.+.- ....-++|+|
T Consensus 97 ~~~~l~~A~a~l~~a~~~~~~~~~~~~---------------~~~a~l~~a~a~l~~a~~~~~R~~~L~~~g~iS~~~ld 161 (390)
T PRK15136 97 AEQAFEKAKTALANSVRQTHQLMINSK---------------QYQANIELQKTALAQAQSDLNRRVPLGNANLIGREELQ 161 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHH
Q ss_pred HHHHHHHHHH
Q 012725 220 RLVDEIQEAR 229 (457)
Q Consensus 220 ~L~~EVqEAR 229 (457)
..+.+++.|+
T Consensus 162 ~a~~~~~~a~ 171 (390)
T PRK15136 162 HARDAVASAQ 171 (390)
T ss_pred HHHHHHHHHH
No 203
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=23.31 E-value=69 Score=27.54 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=14.5
Q ss_pred CcchhHHHHHHHHHHHHh
Q 012725 213 SKTQDVERLVDEIQEARR 230 (457)
Q Consensus 213 s~kqd~e~L~~EVqEARR 230 (457)
.-++.-++|++||+|||+
T Consensus 65 DcpeA~~eL~~eI~eAK~ 82 (91)
T PF08285_consen 65 DCPEAAKELQKEIKEAKA 82 (91)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345677899999999985
No 204
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=23.11 E-value=66 Score=25.06 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=18.3
Q ss_pred HhHHHhhcccchhhhHHhhhhchhH
Q 012725 64 VQLSEQHKRLSVRDLASKFDKNLTA 88 (457)
Q Consensus 64 a~L~~q~kRLSVRDLA~KFEKgl~~ 88 (457)
-+.+.++.+.|+.|||..|.--..+
T Consensus 6 ~~~l~~~~~~S~~eLa~~~~~s~~~ 30 (69)
T PF09012_consen 6 RDYLRERGRVSLAELAREFGISPEA 30 (69)
T ss_dssp HHHHHHS-SEEHHHHHHHTT--HHH
T ss_pred HHHHHHcCCcCHHHHHHHHCcCHHH
Confidence 4678899999999999999755443
No 205
>PRK06328 type III secretion system protein; Validated
Probab=23.09 E-value=4.6e+02 Score=25.36 Aligned_cols=37 Identities=24% Similarity=0.231 Sum_probs=26.8
Q ss_pred ccceeeeeee-cCCcEEEEEecCCCCCCCCchhHHHHHhh
Q 012725 341 VGRVLQADIL-SNGQKITVTSAGPIESAAGLGSYVETLLR 379 (457)
Q Consensus 341 VGr~LqadI~-~~G~k~~~~T~GPidpAaGL~~yVEaL~r 379 (457)
.+|.+.+|-. ..|.-..=+-.|=|| ++|..-.+.|-+
T Consensus 161 ~~~~I~~D~~L~~GgCiIET~~G~VD--asle~ql~~l~~ 198 (223)
T PRK06328 161 DSLIISPKADVTPGGCIIETEAGIIN--AQLDVQLAALEK 198 (223)
T ss_pred CceEEEeCCCCCCCCeEEEeCCceEE--ecHHHHHHHHHH
Confidence 4677777774 566666666788888 888888777654
No 206
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.99 E-value=6.6e+02 Score=26.01 Aligned_cols=34 Identities=24% Similarity=0.350 Sum_probs=25.2
Q ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Q 012725 240 VMDMEHELHALRTQIREKSVLSLKIQKELAMNKR 273 (457)
Q Consensus 240 vMDME~El~~LR~ql~EKs~~~v~L~KEL~~~kr 273 (457)
.-+.|-++..|+..+.++.-....|+++++..+.
T Consensus 256 l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~ 289 (498)
T TIGR03007 256 IEALEKQLDALRLRYTDKHPDVIATKREIAQLEE 289 (498)
T ss_pred HHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 4455677777777777788888999999975544
No 207
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=22.95 E-value=1.9e+02 Score=23.25 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=12.9
Q ss_pred CCCCceeeEEEeeeCCC
Q 012725 305 SLSKCSIQWYRVSLDGS 321 (457)
Q Consensus 305 dlSkcsiQWyRv~~~gs 321 (457)
..+.-.|.||+..+++.
T Consensus 19 ~~~~~~i~W~k~~~~~~ 35 (106)
T cd05714 19 APHGPRIKWTKLESDGA 35 (106)
T ss_pred CCCCcEEEEEEeCCCCC
Confidence 36788999999975433
No 208
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=22.92 E-value=7.3e+02 Score=24.36 Aligned_cols=44 Identities=34% Similarity=0.493 Sum_probs=21.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHh
Q 012725 179 NQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARR 230 (457)
Q Consensus 179 ~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARR 230 (457)
.+||..-.+++..+.+-|.++.++.+..+ .+.+.|..++.+||+
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke--------~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKE--------EEAEELQEELEEARE 117 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Confidence 34444455555555555555555554433 256666777766665
No 209
>PRK10780 periplasmic chaperone; Provisional
Probab=22.85 E-value=5.7e+02 Score=23.13 Aligned_cols=7 Identities=29% Similarity=0.202 Sum_probs=4.7
Q ss_pred cceeecc
Q 012725 280 CLYVFDG 286 (457)
Q Consensus 280 ~~yeLeG 286 (457)
-.|.|+.
T Consensus 138 y~~Vld~ 144 (165)
T PRK10780 138 YDLVVDA 144 (165)
T ss_pred CeEEEeC
Confidence 4588874
No 210
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=22.57 E-value=7.9e+02 Score=26.52 Aligned_cols=23 Identities=39% Similarity=0.312 Sum_probs=15.9
Q ss_pred hhhchhhHHHHHHHHHHHHhhcc
Q 012725 101 VASLEGHVLLKKLRDALEALRGR 123 (457)
Q Consensus 101 va~Ler~vLLKkLRd~LesLrGR 123 (457)
...|=+.+|++|+-++++.+..-
T Consensus 253 ~~ll~g~~l~~k~~~~~e~l~~~ 275 (429)
T PF10037_consen 253 SPLLWGLVLYGKALDAMELLASI 275 (429)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhc
Confidence 44456777777777777777665
No 211
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.37 E-value=7e+02 Score=27.10 Aligned_cols=104 Identities=26% Similarity=0.379 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhhcccCCC--ChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHH-HHHHHHHHHhhHHHHHHHHHhhhhhH
Q 012725 110 LKKLRDALEALRGRMAGR--TKEDVEKAISLVEALAVKLTQNEGELIQEKFEV-KKLANFLKQASEDAKKLVNQEKSFAC 186 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGr--nKddVeeaismVEaLavqltqrE~ELiQeK~EV-kKlA~~lKqASeDAkkiV~eERa~A~ 186 (457)
+|.||.-.+.++-.+.-| ...+|++.+++=+.. .++.+.=.+|..++-++ +.++.-+++.-+||-.+.++-+...
T Consensus 4 ~k~ir~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~-r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~- 81 (429)
T COG0172 4 LKLIRENPDAVREKLKKRGGDALDVDKLLELDEER-RKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELK- 81 (429)
T ss_pred HHHhhhCHHHHHHHHhhcCCchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH-
Confidence 566666666666666555 466777777765444 34444444444444443 3344344444446666666544443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 012725 187 AEIESARAVVQRFGEALEEEEKNSPKSKT 215 (457)
Q Consensus 187 aEIE~ARAaV~Rve~aleEqe~~s~~s~k 215 (457)
.+|+.+.+....++..+++--....+..-
T Consensus 82 ~~l~~~e~~~~~~~~~l~~~ll~ipNi~~ 110 (429)
T COG0172 82 EKLKELEAALDELEAELDTLLLTIPNIPH 110 (429)
T ss_pred HHHHhccHHHHHHHHHHHHHHHhCCCCCc
Confidence 46777777777777777665554444433
No 212
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=22.35 E-value=1.2e+03 Score=29.31 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcch--hHHHHHHHHH
Q 012725 188 EIESARAVVQRFGEALEEEEKNSPKSKTQ--DVERLVDEIQ 226 (457)
Q Consensus 188 EIE~ARAaV~Rve~aleEqe~~s~~s~kq--d~e~L~~EVq 226 (457)
-|+-|+.-+..|++-..--|...++..+| +++..++|++
T Consensus 1592 ~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk 1632 (1758)
T KOG0994|consen 1592 DIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELK 1632 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555444445554444444 5555555554
No 213
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.20 E-value=1e+03 Score=27.47 Aligned_cols=107 Identities=22% Similarity=0.288 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHH------HHh-------hhhhHHHHHHHHHHHHHHHHHHHHHHhc---CCCCcchhHHH
Q 012725 157 KFEVKKLANFLKQASEDAKKLV------NQE-------KSFACAEIESARAVVQRFGEALEEEEKN---SPKSKTQDVER 220 (457)
Q Consensus 157 K~EVkKlA~~lKqASeDAkkiV------~eE-------Ra~A~aEIE~ARAaV~Rve~aleEqe~~---s~~s~kqd~e~ 220 (457)
+.||..|..-|-|+++|--+-. =+| =..-.||.+++|.-+....+||-+-.-. +-.+|-..-|-
T Consensus 14 r~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~Ees 93 (772)
T KOG0999|consen 14 RQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREES 93 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Confidence 4556666666666665532211 112 2234567778888888888877653322 23333334444
Q ss_pred HHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHH
Q 012725 221 LVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKE 267 (457)
Q Consensus 221 L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KE 267 (457)
|-.|-- ||---. --|+.+||+||..||+-+.++-.+--.|.++
T Consensus 94 LLqESa-akE~~y---l~kI~eleneLKq~r~el~~~q~E~erl~~~ 136 (772)
T KOG0999|consen 94 LLQESA-AKEEYY---LQKILELENELKQLRQELTNVQEENERLEKV 136 (772)
T ss_pred HHHHHH-HhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444321 111111 1267899999999999998876555444443
No 214
>PRK01558 V-type ATP synthase subunit E; Provisional
Probab=22.09 E-value=5.1e+02 Score=24.39 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=18.1
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
..+..|-+.|.+|+++.++.|..-++.|+.-.
T Consensus 26 ~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea 57 (198)
T PRK01558 26 EIILEAKEEAEEIIAKAEEEAKELKAKAEKEA 57 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666655555554433
No 215
>PRK09098 type III secretion system protein HrpB; Validated
Probab=22.00 E-value=6.3e+02 Score=24.70 Aligned_cols=30 Identities=30% Similarity=0.354 Sum_probs=20.6
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVV 196 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV 196 (457)
|.+|-++|.+|+++.|+.|.+=++.|+.-.
T Consensus 45 la~Ar~~A~~Il~~A~~~A~~I~~~A~~e~ 74 (233)
T PRK09098 45 LAAARARAERIVAEARAQAEAILEAARREA 74 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777777777777677766543
No 216
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.98 E-value=6.1e+02 Score=23.14 Aligned_cols=77 Identities=25% Similarity=0.376 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhH
Q 012725 107 HVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFAC 186 (457)
Q Consensus 107 ~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 186 (457)
..+.|.+..+|+.=.-+++ +++++|=..-+=....+.+-|.+|.+-+ .+-+....+|-.+|+.+.++.+..|.
T Consensus 25 ~~~~~pi~~~l~~R~~~I~----~~l~~A~~~~~ea~~~~~~~~~~l~~Ar---~~a~~Ii~~A~~~a~~~~~e~~~~a~ 97 (161)
T COG0711 25 KFVWKPILKALDERQAKIA----DDLAEAERLKEEAQALLAEYEQELEEAR---EQASEIIEQAKKEAEQIAEEIKAEAE 97 (161)
T ss_pred HHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455777777777555553 4444444443333333444444444433 34445556667777777777666666
Q ss_pred HHHH
Q 012725 187 AEIE 190 (457)
Q Consensus 187 aEIE 190 (457)
.|.+
T Consensus 98 ~e~~ 101 (161)
T COG0711 98 EELE 101 (161)
T ss_pred HHHH
Confidence 5544
No 217
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=21.90 E-value=2.7e+02 Score=28.67 Aligned_cols=64 Identities=20% Similarity=0.272 Sum_probs=44.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 012725 97 KLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKK 176 (457)
Q Consensus 97 K~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk 176 (457)
.|+....=+|-.+|+++.++|. .++|++-+++.. ..=.+ +.+-+.|+..++.+++-....+++
T Consensus 36 ~w~~~~~~~R~~~L~~~a~~l~--------~~~~~l~~~~~~----e~Gk~-----~~~~~~ev~~~~~~~~~~a~~~~~ 98 (457)
T cd07114 36 AWRKLTPTERGKLLRRLADLIE--------ANAEELAELETR----DNGKL-----IRETRAQVRYLAEWYRYYAGLADK 98 (457)
T ss_pred chhhCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----hcCCC-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888899999999999987 467777766532 11111 223456888888888876655554
Q ss_pred H
Q 012725 177 L 177 (457)
Q Consensus 177 i 177 (457)
+
T Consensus 99 ~ 99 (457)
T cd07114 99 I 99 (457)
T ss_pred h
Confidence 4
No 218
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=21.67 E-value=1e+03 Score=25.65 Aligned_cols=101 Identities=25% Similarity=0.294 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHH----HH
Q 012725 152 ELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEI----QE 227 (457)
Q Consensus 152 ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EV----qE 227 (457)
+|-+|+.-++-=-+.|..--++-+-=..+..+.+..+.+..|.-++..+..+...-.. -.|+.-+..|. .+
T Consensus 278 ~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-----e~e~~l~~~el~~~~ee 352 (511)
T PF09787_consen 278 ELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTT-----EAELRLYYQELYHYREE 352 (511)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhch-----HHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhccCCcccccchHHHHHHHHHHHHHh
Q 012725 228 ARRIKRLHQPSKVMDMEHELHALRTQIREKS 258 (457)
Q Consensus 228 ARRIKmLH~PSKvMDME~El~~LR~ql~EKs 258 (457)
..|-+-.++ .|..+-|.||+.||++++.++
T Consensus 353 ~~~~~s~~~-~k~~~ke~E~q~lr~~l~~~~ 382 (511)
T PF09787_consen 353 LSRQKSPLQ-LKLKEKESEIQKLRNQLSARA 382 (511)
T ss_pred HHHhcChHH-HHHHHHHHHHHHHHHHHHHHh
No 219
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=21.63 E-value=1.1e+02 Score=24.47 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHHHHHHhHHHH
Q 012725 241 MDMEHELHALRTQIREKSVLSL 262 (457)
Q Consensus 241 MDME~El~~LR~ql~EKs~~~v 262 (457)
.+||-||+.||.....|-.-.+
T Consensus 22 ~~ME~Eieelr~RY~~KRqPIl 43 (49)
T PF11629_consen 22 PEMEQEIEELRQRYQAKRQPIL 43 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHH
Confidence 5799999999999998865443
No 220
>PF05878 Phyto_Pns9_10: Phytoreovirus nonstructural protein Pns9/Pns10; InterPro: IPR008776 This family consists of the Phytoreovirus nonstructural proteins Pns9 and Pns10. The function of this family is unknown.
Probab=21.48 E-value=64 Score=33.51 Aligned_cols=47 Identities=23% Similarity=0.280 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHH
Q 012725 217 DVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKI 264 (457)
Q Consensus 217 d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L 264 (457)
|+++--+..-+|-==-.+|||||.| |+-+|...|.+|..|....|++
T Consensus 174 Dv~~wleKl~~a~~g~~~~QKsk~q-M~~~i~~~Rn~I~n~I~~fVn~ 220 (312)
T PF05878_consen 174 DVVEWLEKLPSAKGGILSNQKSKAQ-MRPEIQRIRNEILNKIQQFVNL 220 (312)
T ss_pred hHHHHHhCCccccccchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 5544444444554455789999998 9999999999999999988875
No 221
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.21 E-value=1.3e+02 Score=27.05 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=46.7
Q ss_pred hhhhHHhhhhchhHHHhhhHH--HhhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHH
Q 012725 75 VRDLASKFDKNLTAAAKLADE--AKLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVE 140 (457)
Q Consensus 75 VRDLA~KFEKgl~~AakLs~E--aK~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVE 140 (457)
+++|+.--|.=|.-...+|.+ .++|+= -+-+||+.|+.|..++.+|+-|+|+-|.-+=..|.
T Consensus 17 l~~L~d~lEevL~ssg~~a~~e~~~lR~r----~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~ 80 (104)
T COG4575 17 LQELLDTLEEVLKSSGSLAGDEAEELRSK----AESALKEARDRLGDTGDAVVQRSKAAADATDDYVR 80 (104)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 567777788878766666665 344432 25789999999999999999999988877665553
No 222
>PF09832 DUF2059: Uncharacterized protein conserved in bacteria (DUF2059); InterPro: IPR018637 This entry contains proteins that have no known function. ; PDB: 2X3O_B 3OAO_A.
Probab=21.15 E-value=3.5e+02 Score=20.52 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=32.7
Q ss_pred HHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHH
Q 012725 138 LVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIE 190 (457)
Q Consensus 138 mVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE 190 (457)
|+++++-.+|+ .|++.+..|++ |+=.+|+++.+.+..++-.+
T Consensus 9 ~~~~y~~~ft~---------~El~~i~~FY~--Sp~Gqk~~~~~~~~~~~~~~ 50 (64)
T PF09832_consen 9 MAPIYAEHFTE---------EELDAILAFYE--SPLGQKIVAKEPALMQASMQ 50 (64)
T ss_dssp HHHHHHHHS-H---------HHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCH---------HHHHHHHHHHC--CHHhHHHHHHhHHHHHHHHH
Confidence 56778888876 46888999996 78889999998887776555
No 223
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.14 E-value=1.4e+03 Score=27.10 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.7
Q ss_pred HHHHHHHhHHHhhcccchhhhHHhhhhchh
Q 012725 58 VVEKETVQLSEQHKRLSVRDLASKFDKNLT 87 (457)
Q Consensus 58 vVakEta~L~~q~kRLSVRDLA~KFEKgl~ 87 (457)
|++-|.--|..|+--.|++|+-.|.|..|+
T Consensus 72 itt~e~rflnaqre~t~~~d~ndklE~~La 101 (916)
T KOG0249|consen 72 ITTLEKRFLNAQRESTSIHDLNDKLENELA 101 (916)
T ss_pred cchHHHHHHhccCCCCCcccchHHHHHHHh
Confidence 677777888889999999999999999988
No 224
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=21.11 E-value=8.7e+02 Score=24.59 Aligned_cols=8 Identities=13% Similarity=0.501 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 012725 247 LHALRTQI 254 (457)
Q Consensus 247 l~~LR~ql 254 (457)
+..|..++
T Consensus 344 ~~~L~r~~ 351 (444)
T TIGR03017 344 MSVLQRDV 351 (444)
T ss_pred HHHHHHHH
Confidence 34444333
No 225
>smart00340 HALZ homeobox associated leucin zipper.
Probab=21.00 E-value=94 Score=24.33 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccccc
Q 012725 217 DVERLVDEIQEARRIKRLHQPSKVMDM 243 (457)
Q Consensus 217 d~e~L~~EVqEARRIKmLH~PSKvMDM 243 (457)
|--.|.+||+|-|++|. .|.-.|.|
T Consensus 20 eNrRL~ke~~eLralk~--~~~~~m~~ 44 (44)
T smart00340 20 ENRRLQKEVQELRALKL--SPPLYMQH 44 (44)
T ss_pred HHHHHHHHHHHHHhccc--CCcccccC
Confidence 44578999999999997 44446654
No 226
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.89 E-value=7.9e+02 Score=23.97 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHHH
Q 012725 214 KTQDVERLVDEIQEA 228 (457)
Q Consensus 214 ~kqd~e~L~~EVqEA 228 (457)
.-.+||.|+.|++|.
T Consensus 122 ~id~Vd~l~Dei~E~ 136 (211)
T PTZ00464 122 NVDKVEDLQDELADL 136 (211)
T ss_pred CHHHHHHHHHHHHHH
Confidence 455899999999886
No 227
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=20.85 E-value=3.9e+02 Score=27.58 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=45.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhh-hH-HHHHHHHHHHHHHhhHHH
Q 012725 97 KLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELI-QE-KFEVKKLANFLKQASEDA 174 (457)
Q Consensus 97 K~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELi-Qe-K~EVkKlA~~lKqASeDA 174 (457)
+|+....-||..+|+++.++|+. |+|++.++++. .-|--+ .. ..||.....+++...+.+
T Consensus 53 ~W~~~~~~~R~~~L~~~a~~l~~--------~~~ela~~~~~----------e~Gk~~~~~~~~ev~~~~~~~~~~~~~~ 114 (471)
T cd07139 53 PWPRLSPAERAAVLRRLADALEA--------RADELARLWTA----------ENGMPISWSRRAQGPGPAALLRYYAALA 114 (471)
T ss_pred chhhCCHHHHHHHHHHHHHHHHH--------hHHHHHHHHHH----------HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58998889999999999999875 67888777643 112222 11 237888888888877777
Q ss_pred HHHH
Q 012725 175 KKLV 178 (457)
Q Consensus 175 kkiV 178 (457)
+++.
T Consensus 115 ~~~~ 118 (471)
T cd07139 115 RDFP 118 (471)
T ss_pred HHhc
Confidence 6653
No 228
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=20.78 E-value=8.2e+02 Score=24.14 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 180 QEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 180 eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
.+...|+++++.|+.-..|.+..++. ...-++|+|+.+.+.+.|+
T Consensus 121 ~~i~~a~~~l~~a~~~~~R~~~L~~~-----g~vS~~~~~~a~~~~~~a~ 165 (346)
T PRK10476 121 EQVERARANAKLATRTLERLEPLLAK-----GYVSAQQVDQARTAQRDAE 165 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-----CCcCHHHHHHHHHHHHHHH
Confidence 34445556666666666666655542 3445668888888777765
No 229
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=20.77 E-value=1.3e+03 Score=26.45 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=6.2
Q ss_pred CCChhHHHHHHHH
Q 012725 126 GRTKEDVEKAISL 138 (457)
Q Consensus 126 GrnKddVeeaism 138 (457)
|-..+=|+.|-.+
T Consensus 493 Glp~~ii~~A~~~ 505 (771)
T TIGR01069 493 GIPHFIIEQAKTF 505 (771)
T ss_pred CcCHHHHHHHHHH
Confidence 3444445555444
No 230
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=20.77 E-value=6.6e+02 Score=23.03 Aligned_cols=30 Identities=30% Similarity=0.284 Sum_probs=18.7
Q ss_pred HHHHhhHHHHHHHHHhhhhhHHHHHHHHHH
Q 012725 166 FLKQASEDAKKLVNQEKSFACAEIESARAV 195 (457)
Q Consensus 166 ~lKqASeDAkkiV~eERa~A~aEIE~ARAa 195 (457)
-|.+|...|+.|+++.+..|..+.+..++.
T Consensus 87 ~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~ 116 (184)
T PRK13455 87 KQREVQEQADRIVAAAKDEAQAAAEQAKAD 116 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677777777777666666655544443
No 231
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=20.75 E-value=6.5e+02 Score=22.98 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=19.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 149 NEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 149 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
|....-..-.+-+++-.=..++-++++.-..+.|..|..=|++|+.
T Consensus 38 R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~ 83 (161)
T COG0711 38 RQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKK 83 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444443334444444444444444444444444443
No 232
>PF12699 phiKZ_IP: phiKZ-like phage internal head proteins; InterPro: IPR024413 Phage internal head proteins (IP) are proteins that are encoded by a bacteriophage and assembled into the mature virion inside the capsid head. The most analogous characterised IP proteins are those of bacteriophage T4, which are known to be proteolytically processed during phage maturation, and then subsequently injected into the host cell during infection. The phiKZ_IP family consists of internal head proteins encoded by phiKZ-like phages. Each phage encodes three to six members of this family []. Members of the family reside in the head [] and are cleaved during phage maturation to separate an N-terminal propeptide from a C-terminal domain. The C-terminal domain remains in the mature capsid. The N-terminal propeptide domain is either mostly or completely removed from the mature capsid. In one case, an unrelated polypeptide is embedded in the propeptide and also remains in the mature capsid. The phiKZ-like IP proteins are not discernibly homologous to the T4 IP proteins, and it is not known if the phiKZ-like IP proteins are injected into the host cell, or have some other function within the head.
Probab=20.64 E-value=1.3e+02 Score=30.72 Aligned_cols=92 Identities=26% Similarity=0.334 Sum_probs=59.0
Q ss_pred hhhhHHhhhhchhHHHhhhHH--HhhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhh
Q 012725 75 VRDLASKFDKNLTAAAKLADE--AKLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGE 152 (457)
Q Consensus 75 VRDLA~KFEKgl~~AakLs~E--aK~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~E 152 (457)
+|++.++|...-..+.-..+| .+.+-+.. ---+|+.|++.+..|.++-.|..+=+.+. ..++-++-.+-+.++.
T Consensus 229 ~~~~~~~f~~i~~~~~~~~ee~tve~~~~~~--i~~~l~~l~~i~~~l~~~~~~~~~~~~~~--d~i~q~a~~~~~~~~~ 304 (339)
T PF12699_consen 229 IRDFTFKFSEIEGDAPDNPEEITVEVPSASE--IRAILKALSGILKRLQDAKEGDKKIKAVK--DAIKQLADAVRKNERR 304 (339)
T ss_pred ccccccccccccccCCCCccceeeecCChHH--HHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHhhcccc
Confidence 899999999988877777775 33443333 33567888888888888888877655432 4444556666655555
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 012725 153 LIQEKFEVKKLANFLKQASEDAKKLVN 179 (457)
Q Consensus 153 LiQeK~EVkKlA~~lKqASeDAkkiV~ 179 (457)
+ -++. .+-+.|++++++.
T Consensus 305 ~--~~~~-------~~~~~e~~~~~~~ 322 (339)
T PF12699_consen 305 M--GKAA-------WDVAREASRKLVR 322 (339)
T ss_pred h--hHHH-------HHHHHHHHHHHHH
Confidence 5 1221 4445566665554
No 233
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=20.60 E-value=1.1e+02 Score=25.13 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=19.4
Q ss_pred ccccceeeEeeCCCCCCCCCCceeeEEE
Q 012725 288 EALGSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 288 e~LGS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
-..|+.+++.....+.|. .-.|+||+
T Consensus 12 v~~G~~v~l~C~v~G~P~--~p~i~W~~ 37 (96)
T cd05865 12 ISVGESKFFLCQVAGEAK--DKDISWFS 37 (96)
T ss_pred ECCCCeEEEEEEEeCCCC--CCEEEEEC
Confidence 356888888887777775 23899996
No 234
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=20.51 E-value=5.4e+02 Score=23.82 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=26.7
Q ss_pred HhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 012725 169 QASEDAKKLVNQEKSFACAEIESARAVVQRFG 200 (457)
Q Consensus 169 qASeDAkkiV~eERa~A~aEIE~ARAaV~Rve 200 (457)
+|--|+++++-+.++.|.|.|..|++-+.+..
T Consensus 185 ~aea~~~~~~~~Aea~a~a~~~~a~gea~a~~ 216 (242)
T cd03405 185 RADADRERTVILAEAYREAQEIRGEGDAEAAR 216 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 47778888888999999999999988887755
No 235
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=20.45 E-value=3.9e+02 Score=23.78 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=10.5
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAE 188 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aE 188 (457)
..+..|-++|.+++++....|..+
T Consensus 12 ~I~~eA~~e~~~i~~~~~~~~~~~ 35 (198)
T PF01991_consen 12 EIIAEAQEEAEKILEEAEEEAEKE 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 236
>PF14174 YycC: YycC-like protein
Probab=20.34 E-value=1.2e+02 Score=24.60 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=26.0
Q ss_pred hHHHhhhHH--HhhhhhhhchhhHHHHHHHHH
Q 012725 87 TAAAKLADE--AKLRDVASLEGHVLLKKLRDA 116 (457)
Q Consensus 87 ~~AakLs~E--aK~reva~Ler~vLLKkLRd~ 116 (457)
.||.|||+. +-+.+++-+=.|+|+.||..+
T Consensus 9 eTA~kLs~~L~vPlE~lMHmPqHIL~qKl~El 40 (53)
T PF14174_consen 9 ETAVKLSKKLGVPLEQLMHMPQHILMQKLAEL 40 (53)
T ss_pred HHHHHHHHHHCCcHHHHhcCcHHHHHHHHHHH
Confidence 489999988 567899999999999999765
No 237
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=20.27 E-value=2.2e+02 Score=27.47 Aligned_cols=53 Identities=25% Similarity=0.201 Sum_probs=29.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 012725 175 KKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEA 228 (457)
Q Consensus 175 kkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEA 228 (457)
+.+-.+.|.....+.+..+.++.+-++.+++-.+. ...-+..+++|.+|++++
T Consensus 120 ~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~-~~e~~~~l~~l~~ei~~~ 172 (176)
T PF12999_consen 120 AELGKEYREELEEEEEIYKEGLKIRQELIEEAKKK-REELEKKLEELEKEIQAA 172 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34556666666677777777776655555444322 222223556666666554
No 238
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=20.12 E-value=1.1e+02 Score=28.34 Aligned_cols=43 Identities=28% Similarity=0.716 Sum_probs=33.0
Q ss_pred eEEEeeeCCCc--------cceecccccccccCCCCcccceeeeeeecCCcEEEE
Q 012725 312 QWYRVSLDGSQ--------KEIISGASKLAYAPEPLDVGRVLQADILSNGQKITV 358 (457)
Q Consensus 312 QWyRv~~~gsk--------~E~IsGAtk~~YAPEP~DVGr~LqadI~~~G~k~~~ 358 (457)
+||=|...|-. .-++.|-.||.|.|. .|.|-++ |+.|.+++.+
T Consensus 14 ~W~viDA~~~~lGRlAs~IAk~L~GKhKp~y~p~-~d~Gd~V---vViNa~ki~~ 64 (144)
T PRK09216 14 KWYVIDAEGKVLGRLASEVASILRGKHKPTFTPH-VDTGDFV---IVINAEKVKL 64 (144)
T ss_pred CEEEEeCCCCchHHHHHHHHHHHhccCCCCcCCC-CCCCCEE---EEEeCceeEE
Confidence 59988865543 246789999999994 6999886 6677777776
No 239
>PRK00565 rplV 50S ribosomal protein L22; Reviewed
Probab=20.11 E-value=2.2e+02 Score=24.75 Aligned_cols=46 Identities=26% Similarity=0.332 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh
Q 012725 109 LLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFA 185 (457)
Q Consensus 109 LLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A 185 (457)
=.||+|-++..+||+ .|++|+.+.+. +=|.|+..-.++++...+||
T Consensus 13 SpkK~~~v~~~IrG~-------~v~~A~~~L~~------------------------~pkk~a~~i~k~L~sA~aNA 58 (112)
T PRK00565 13 SPRKARLVADLIRGK-------KVEEALAILKF------------------------SPKKAARLVKKVLKSAIANA 58 (112)
T ss_pred CHHHHHHHHHHHcCC-------cHHHHHHHHHH------------------------CcHhHHHHHHHHHHHHHHHH
Confidence 358999999999987 57889888766 34455666666666666666
Done!