Query 012725
Match_columns 457
No_of_seqs 36 out of 38
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 15:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dix_A Plectin-related protein 100.0 5.1E-85 1.7E-89 609.8 14.7 166 272-437 5-171 (230)
2 4djg_A Plectin-related protein 99.9 1.2E-28 4.1E-33 187.4 3.7 52 101-152 1-52 (52)
3 3vkg_A Dynein heavy chain, cyt 94.1 0.4 1.4E-05 58.8 13.7 139 130-271 1927-2068(3245)
4 2dfs_A Myosin-5A; myosin-V, in 88.0 1.5 5.3E-05 48.6 9.3 77 186-267 976-1052(1080)
5 3ol1_A Vimentin; structural ge 80.9 7.1 0.00024 33.0 8.3 40 167-206 18-60 (119)
6 3na7_A HP0958; flagellar bioge 79.4 38 0.0013 31.1 14.7 164 129-299 45-211 (256)
7 3oja_B Anopheles plasmodium-re 78.0 47 0.0016 32.7 14.3 38 241-278 547-585 (597)
8 3swk_A Vimentin; cytoskeleton, 69.4 7.6 0.00026 31.4 5.3 67 179-254 13-79 (86)
9 4e81_A Chaperone protein DNAK; 68.1 46 0.0016 30.3 10.8 72 126-205 118-190 (219)
10 3vkg_A Dynein heavy chain, cyt 66.4 65 0.0022 40.4 14.5 14 73-86 1873-1886(3245)
11 4etp_A Kinesin-like protein KA 62.9 54 0.0019 32.5 11.0 40 351-390 137-192 (403)
12 1i84_S Smooth muscle myosin he 62.3 27 0.00091 38.8 9.5 7 33-39 765-771 (1184)
13 2i1j_A Moesin; FERM, coiled-co 58.7 2.9 0.0001 43.3 1.2 124 90-230 321-447 (575)
14 3fpp_A Macrolide-specific effl 58.0 33 0.0011 31.4 7.9 60 145-204 84-145 (341)
15 3mq9_A Bone marrow stromal ant 54.7 48 0.0016 32.0 8.8 86 165-264 373-469 (471)
16 4h7n_A Aldehyde dehydrogenase; 52.5 57 0.002 32.3 9.2 66 97-180 43-108 (474)
17 3oja_B Anopheles plasmodium-re 50.1 1.1E+02 0.0036 30.2 10.6 28 242-269 541-568 (597)
18 3lh2_H FV 4E10 heavy chain; ep 49.7 47 0.0016 27.5 6.9 69 290-361 16-86 (137)
19 1c1g_A Tropomyosin; contractIl 48.5 1.2E+02 0.004 25.2 14.8 10 245-254 174-183 (284)
20 2dfs_A Myosin-5A; myosin-V, in 48.0 1.7E+02 0.0059 32.7 12.9 28 217-252 1024-1051(1080)
21 1m1j_B Fibrinogen beta chain; 47.5 2.4E+02 0.0084 29.1 13.0 89 113-206 98-194 (464)
22 3osk_A Cytotoxic T-lymphocyte 46.6 32 0.0011 27.3 5.3 32 289-320 14-45 (130)
23 2ykz_A Cytochrome C'; electron 45.1 1.3E+02 0.0044 24.8 10.3 93 104-202 10-115 (127)
24 4efa_E V-type proton ATPase su 45.1 81 0.0028 28.4 8.2 35 157-193 14-49 (233)
25 4gjt_B Poliovirus receptor-rel 43.5 42 0.0014 26.0 5.4 37 289-325 13-49 (123)
26 3na7_A HP0958; flagellar bioge 43.0 2E+02 0.0068 26.3 13.4 42 181-228 61-102 (256)
27 3k1k_C Enhancer; nanobody, ant 42.7 85 0.0029 25.0 7.2 38 289-327 15-52 (123)
28 4b9q_A Chaperone protein DNAK; 42.7 1.7E+02 0.0059 29.8 11.1 18 126-143 506-523 (605)
29 3qh9_A Liprin-beta-2; coiled-c 41.9 39 0.0013 28.0 5.1 44 217-268 20-77 (81)
30 2ens_A Advanced glycosylation 40.3 29 0.00099 25.2 3.8 24 289-315 23-46 (96)
31 2j8w_A Cytochrome C'; heme, ir 39.7 1.6E+02 0.0055 24.3 11.2 93 104-202 10-118 (129)
32 1i84_S Smooth muscle myosin he 39.7 1.2E+02 0.0042 33.6 10.1 19 187-205 920-938 (1184)
33 4dk0_A Putative MACA; alpha-ha 39.5 1.1E+02 0.0038 28.1 8.4 10 245-254 136-145 (369)
34 1vf7_A Multidrug resistance pr 37.5 1.3E+02 0.0044 28.3 8.6 44 181-229 82-125 (369)
35 1m1j_C Fibrinogen gamma chain; 37.2 3.4E+02 0.012 27.4 13.1 76 185-268 46-128 (409)
36 3qne_A Seryl-tRNA synthetase, 37.0 99 0.0034 31.9 8.3 92 113-208 15-106 (485)
37 3rk3_E Complexin-1; snare prot 36.9 21 0.0007 28.4 2.6 21 239-259 31-51 (63)
38 1mqv_A Cytochrome C'; four-hel 36.3 1.8E+02 0.0062 23.9 10.2 92 104-203 6-113 (125)
39 3r0m_A Llama VHH A12; IG domai 35.8 1E+02 0.0035 25.7 6.9 36 290-326 14-49 (143)
40 1f5n_A Interferon-induced guan 35.2 3.3E+02 0.011 28.5 11.9 23 186-208 493-515 (592)
41 3k81_A Single strand antibody 34.7 1.8E+02 0.0063 23.6 8.3 38 289-327 13-50 (127)
42 2k6i_A Uncharacterized protein 34.3 26 0.0009 27.2 2.7 28 167-194 21-48 (56)
43 2oi9_C V beta, T cell receptor 33.5 46 0.0016 26.2 4.2 33 290-326 15-47 (121)
44 3k74_B Nanobody; immunoglobuli 33.4 1.3E+02 0.0043 23.1 6.7 36 290-326 12-47 (115)
45 3bj9_1 Immunoglobulin IOTA cha 33.2 35 0.0012 25.8 3.4 37 290-326 12-48 (116)
46 2edj_A Roundabout homolog 2; K 32.5 41 0.0014 24.3 3.5 24 289-315 21-44 (100)
47 2ftc_M Mitochondrial ribosomal 31.9 62 0.0021 27.0 4.9 46 110-186 10-55 (110)
48 2dq0_A Seryl-tRNA synthetase; 31.5 1E+02 0.0035 31.1 7.3 101 104-207 2-103 (455)
49 1cpq_A Cytochrome C'; electron 31.1 2.3E+02 0.0077 23.5 8.2 93 104-202 8-117 (129)
50 3bfo_A Mucosa-associated lymph 31.0 32 0.0011 24.8 2.7 24 289-315 16-39 (91)
51 1f5n_A Interferon-induced guan 31.0 1.4E+02 0.0046 31.4 8.3 43 174-216 485-530 (592)
52 4hwu_A Fibroblast growth facto 30.7 1.5E+02 0.005 21.2 7.3 53 289-346 14-68 (95)
53 4frw_A Poliovirus receptor-rel 30.5 35 0.0012 26.6 3.0 34 289-322 12-45 (218)
54 1gqa_A Cytochrome C'; electron 30.3 2.4E+02 0.0081 23.5 9.6 92 104-202 8-118 (130)
55 3eak_A NBBCII10-FGLA; antibody 30.2 1.2E+02 0.0039 25.0 6.2 38 289-326 13-52 (137)
56 1fo0_B Protein (BM3.3 T cell r 30.1 1.2E+02 0.0041 23.1 6.0 36 290-328 15-50 (112)
57 2ftc_H L13MT, MRP-L13, 39S rib 29.6 36 0.0012 30.4 3.2 43 312-358 17-67 (148)
58 3tnu_A Keratin, type I cytoske 29.5 1.9E+02 0.0065 24.3 7.6 15 122-136 1-15 (131)
59 2ckn_A Basic fibroblast growth 29.3 1.1E+02 0.0037 22.1 5.4 23 289-315 22-44 (95)
60 1in0_A YAJQ protein, HI1034; a 29.3 20 0.00068 32.8 1.6 18 123-140 131-148 (163)
61 1u00_A HSC66, chaperone protei 29.2 3.2E+02 0.011 24.6 10.0 19 126-144 115-133 (227)
62 3lss_A Seryl-tRNA synthetase; 29.1 3.2E+02 0.011 28.2 10.5 105 102-209 6-140 (484)
63 1l2p_A ATP synthase B chain; a 29.1 1.6E+02 0.0056 21.3 6.3 23 168-190 5-27 (61)
64 1kil_E Complexin I snare-compl 29.0 22 0.00075 27.2 1.5 20 239-258 28-47 (49)
65 3tpk_A Immunoglobulin heavy ch 28.9 1.1E+02 0.0037 24.9 5.8 36 289-325 17-52 (136)
66 2f1m_A Acriflavine resistance 28.8 3E+02 0.01 24.3 9.3 40 185-229 72-111 (277)
67 3v6i_A V-type ATP synthase sub 28.7 1.4E+02 0.0048 25.9 6.8 37 162-198 14-50 (187)
68 1xn7_A Hypothetical protein YH 27.8 34 0.0012 26.9 2.5 25 64-88 8-32 (78)
69 3iy0_H FAB 14, heavy domain; c 27.0 1.4E+02 0.0048 23.2 5.9 37 289-326 13-49 (120)
70 2f1m_A Acriflavine resistance 26.7 94 0.0032 27.6 5.4 27 414-447 244-270 (277)
71 2qhl_A Novel immune-type recep 26.7 1.8E+02 0.0062 21.9 6.4 51 290-343 13-66 (111)
72 3t0v_A Immunoglobulin variable 26.2 70 0.0024 25.5 4.1 38 289-327 13-50 (123)
73 2p45_B Antibody CAB-RN05; seMe 25.7 76 0.0026 24.5 4.2 36 290-326 16-51 (123)
74 3qyc_A VH domain of IGG molecu 25.6 1.4E+02 0.0047 24.8 6.0 36 289-325 15-50 (146)
75 2otu_A FV light chain variable 24.7 49 0.0017 25.3 2.8 35 290-326 15-49 (115)
76 2wzp_D Camelid VHH5; baseplate 24.6 65 0.0022 24.9 3.6 36 290-326 14-49 (123)
77 2x1q_A Gelsolin nanobody; cont 23.9 1E+02 0.0035 24.2 4.6 37 289-326 13-49 (127)
78 1oaq_L Light chain; antibody, 23.9 51 0.0018 25.3 2.8 38 290-327 14-51 (120)
79 3k3q_A Llama AA1 VHH domain; l 23.6 2.2E+02 0.0076 23.8 6.9 37 289-326 16-63 (151)
80 3kh6_A Poly [ADP-ribose] polym 23.6 45 0.0015 30.4 2.8 43 398-453 21-63 (199)
81 1qfw_M FV, antibody (anti beta 23.3 72 0.0025 23.9 3.5 36 290-328 15-50 (108)
82 2yc1_A Single chain antibody f 23.1 57 0.002 24.8 2.9 37 289-326 13-49 (117)
83 3b9v_A Heavy chain variable do 22.8 63 0.0022 24.7 3.1 36 290-326 14-49 (120)
84 3iyk_A VP5; icosahedral virus; 22.5 7.2E+02 0.025 26.4 11.8 92 107-205 117-214 (526)
85 2h32_A Immunoglobulin IOTA cha 22.2 74 0.0025 25.2 3.5 39 289-327 13-51 (126)
86 2hp4_A T-cell surface glycopro 21.9 2.5E+02 0.0087 21.4 6.5 29 290-320 14-42 (114)
87 1rjc_A 1D2L19, camelid heavy c 21.8 1.2E+02 0.0041 24.6 4.8 37 289-326 13-49 (137)
88 3bp6_B Programmed cell death 1 21.8 85 0.0029 25.1 3.8 26 290-315 16-43 (202)
89 3iwj_A Putative aminoaldehyde 21.6 3.6E+02 0.012 27.0 9.1 68 97-181 65-132 (503)
90 3tnu_B Keratin, type II cytosk 21.6 3.5E+02 0.012 22.5 9.9 39 125-163 2-41 (129)
91 2dq3_A Seryl-tRNA synthetase; 21.1 95 0.0032 30.9 4.8 93 110-207 4-102 (425)
92 3fpp_A Macrolide-specific effl 21.0 3.7E+02 0.013 24.4 8.4 50 149-198 74-125 (341)
93 2k02_A Ferrous iron transport 21.0 48 0.0017 26.9 2.2 11 308-318 70-80 (87)
94 3omz_A Human vdelta1 gamma del 21.0 1.5E+02 0.0052 24.9 5.4 34 290-326 16-49 (259)
95 1s05_A Cytochrome C-556, C556; 20.9 3.3E+02 0.011 22.7 7.4 91 104-202 6-116 (129)
96 1sjv_A R9; camelids antibody, 20.9 98 0.0033 23.4 3.9 31 289-320 13-43 (114)
97 1a4s_A ALDH, betaine aldehyde 20.6 1.8E+02 0.0062 29.2 6.7 65 97-178 73-137 (503)
98 3r8s_S 50S ribosomal protein L 20.6 86 0.003 26.1 3.7 47 109-186 13-59 (110)
99 1i8k_A Epidermal growth factor 20.4 87 0.003 23.4 3.4 36 289-327 14-49 (107)
100 3r08_E T-cell surface glycopro 20.4 1.3E+02 0.0046 23.4 4.6 21 290-315 13-33 (82)
101 1a2y_B IGG1-kappa D1.3 FV (hea 20.2 83 0.0028 24.0 3.3 37 289-326 13-49 (116)
No 1
>4dix_A Plectin-related protein; PH domain, IG domain, malonate ION, beta sheet, PH superfold cytosolic, protein binding; 1.70A {Arabidopsis thaliana}
Probab=100.00 E-value=5.1e-85 Score=609.78 Aligned_cols=166 Identities=55% Similarity=0.905 Sum_probs=157.0
Q ss_pred hhhccccCcceeecccccccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecccccccccCCCCcccceeeeeeec
Q 012725 272 KRAEENKSCLYVFDGSEALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISGASKLAYAPEPLDVGRVLQADILS 351 (457)
Q Consensus 272 kr~een~~~~yeLeG~e~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsGAtk~~YAPEP~DVGr~LqadI~~ 351 (457)
.+.+||.+++|+|||+|+|||+|+|+|++|++||||+|+|||||+++|||++|+|||||||+||||||||||+|||||++
T Consensus 5 ~~~e~n~~~~y~L~G~e~LGs~L~i~~~~~~~~dlS~CsiQW~R~~~egs~re~IsGAtk~~YAPeP~DVGrlLqadi~~ 84 (230)
T 4dix_A 5 SKSEENISLVYEIDGTEALGSCLRVRPCSNDAPDLSKCTIQWYRSSSDGSKKELISGATKSVYAPEPFDVGRVLHADIIY 84 (230)
T ss_dssp --------CCEEEESCCBTTSCEEEEESSTTSCCGGGSEEEEEEECTTSSSEEECTTCCSSEECCCGGGBTSEEEEEEEE
T ss_pred cccccCCCcceeecchhhccceEEEEeccCCCCcccccceEEEEeecCCCceeEEeccccccccCCccccccEEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecCCCCCCCCchhHHHHHhhcCCCeeeEEEEeecCCcCCCCcceeeeecceeeEeeccceeeee-eeccccc
Q 012725 352 NGQKITVTSAGPIESAAGLGSYVETLLRKSSSEFNVVISQMNGQDYSSHSNHCFNVGKLRIKLCRGWITNLE-KYITHQC 430 (457)
Q Consensus 352 ~G~k~~~~T~GPidpAaGL~~yVEaL~rk~~tEFNVvi~Q~NG~d~~s~s~hvl~igklRiKL~KG~~t~Ak-~YSssmq 430 (457)
||++++++|+|||||||||++|||+|+||+++||||||+||||+||+|+|+||||||||||||||||+|+|| +||++||
T Consensus 85 ~G~k~t~~T~gpId~a~GL~~yVEaL~rk~~tEFNVvv~q~nG~d~~s~sihvl~vgk~RiKL~kg~~t~akE~YSssmQ 164 (230)
T 4dix_A 85 DGHSLSLSTVGKIDPAAGLGSYVEALVRKHDVDFNVVVTQMSGEDHTSESIHLFHVGKMRIKLCKGKTVIAKEYYSSAMQ 164 (230)
T ss_dssp TTEEEEEEEEEEBBCCTTHHHHHHHHHTTSEEEEEEEEEEETTEECCCCCEEEEEEESSEEEEEETTEEEEEEECCTTCE
T ss_pred CCcEEEEEecCCCCCCchhHHHHHHHhhcCCCcEEEEEEEEcCccCccceEEEEEeccEEEEEecCceEEeeeeecccce
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cccccch
Q 012725 431 SCAELEV 437 (457)
Q Consensus 431 LCG~~~~ 437 (457)
|||.|+-
T Consensus 165 LCGvRgg 171 (230)
T 4dix_A 165 LCGVRGG 171 (230)
T ss_dssp EEECSSC
T ss_pred eeeccCC
Confidence 9999974
No 2
>4djg_A Plectin-related protein; coiled-coil, four helix bundle, dimerization, cytosolic, Pro binding; 1.90A {Arabidopsis thaliana}
Probab=99.94 E-value=1.2e-28 Score=187.42 Aligned_cols=52 Identities=77% Similarity=1.067 Sum_probs=48.6
Q ss_pred hhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhh
Q 012725 101 VASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGE 152 (457)
Q Consensus 101 va~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~E 152 (457)
+|+||||+||||||++||+|||||||||||||||||||||||||||||||+|
T Consensus 1 ~a~Ler~vLlKkLr~~Le~L~GRvaGrnkddveeaismVealavqltqrE~E 52 (52)
T 4djg_A 1 ATSLEKHVLLKKLRDALESLRGRVAGRNKDDVEEAIAMVEALAVQLTQREGE 52 (52)
T ss_dssp ---CTTCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CcchhHHHHHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5899999999999999999999999999999999999999999999999997
No 3
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.06 E-value=0.4 Score=58.85 Aligned_cols=139 Identities=14% Similarity=0.115 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHH---HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 130 EDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASED---AKKLVNQEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 130 ddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeD---AkkiV~eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
+-+.+|-.-|+.|-.+|+..+-+|.+.+.|..++-.-+...+.+ -|+.|+++.+.+..+-+.+.+--..+++-|.+-
T Consensus 1927 ~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A 2006 (3245)
T 3vkg_A 1927 KKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44678899999999999999999999988888765555443333 344555544444333222222222233333332
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 012725 207 EKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQKELAMN 271 (457)
Q Consensus 207 e~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~KEL~~~ 271 (457)
+-. .-.+++++++.++..+|.. ++-..=.++-+.|.+|..|+.++.+...+.-.|+.|++..
T Consensus 2007 ~Pa--~Pkr~~l~~ae~~l~~~~~-~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~ 2068 (3245)
T 3vkg_A 2007 EPT--GPLREEVEQLENAANELKL-KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV 2068 (3245)
T ss_dssp ------CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--ChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 3344567777666666553 1111224556788899999999999999988888887643
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=87.97 E-value=1.5 Score=48.64 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhHHHHHHH
Q 012725 186 CAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSVLSLKIQ 265 (457)
Q Consensus 186 ~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~~~v~L~ 265 (457)
..|.+++.+-|..+++-+++.+...+...+ +.+.|.++.++.. .-|+ .||-+|+.|...||+|+.+-........
T Consensus 976 ~~e~~~~~~~v~~L~~e~~~l~~~~~~~~k-e~~~lee~~~~~~--~~L~--~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYK--HETE--QLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555544444443322222 2223333222222 1334 8899999999999999988776666555
Q ss_pred HH
Q 012725 266 KE 267 (457)
Q Consensus 266 KE 267 (457)
++
T Consensus 1051 ~~ 1052 (1080)
T 2dfs_A 1051 KE 1052 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=80.92 E-value=7.1 Score=32.98 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=28.9
Q ss_pred HHHhhHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVN---QEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 167 lKqASeDAkkiV~---eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
+..--+|.|+-++ .+++....||.+++.++..+..-+++.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E 60 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEE 60 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3344456666654 477888889999999998888777653
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=79.38 E-value=38 Score=31.10 Aligned_cols=164 Identities=10% Similarity=0.158 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 012725 129 KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAK--KLVNQEKSFACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 129 KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAk--kiV~eERa~A~aEIE~ARAaV~Rve~aleEq 206 (457)
++.++.+-.-++.+..+..+.|.++-+-+.-+++.-.-|..++ +.| .-+..|-.++..+|..+..-++.+.+.+++.
T Consensus 45 ~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~ 123 (256)
T 3na7_A 45 NKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRK 123 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666667777888888888888888888888877776654 221 2233444455555555555555555555444
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHHhH-HHHHHHHHHHHhhhhccccCcceeec
Q 012725 207 EKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREKSV-LSLKIQKELAMNKRAEENKSCLYVFD 285 (457)
Q Consensus 207 e~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EKs~-~~v~L~KEL~~~kr~een~~~~yeLe 285 (457)
+..... -++.++.+..++.+++.=- =..+-+.+-|+..|+.+..+-.. .--.|.+.-..+++.. |..+.=.+.
T Consensus 124 ~~~l~~-~~~~l~~~~~~l~~~~~~~----~~~~~e~~~e~~~l~~~r~~l~~~i~~~lL~~Yerir~~~-~g~avv~v~ 197 (256)
T 3na7_A 124 SEKQED-LKKEMLELEKLALELESLV----ENEVKNIKETQQIIFKKKEDLVEKTEPKIYSFYERIRRWA-KNTSIVTIK 197 (256)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH-GGGSEEECB
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCceEEEee
Confidence 332211 1123444444443332200 00111223333333333222111 1223444445455433 445677788
Q ss_pred ccccccceeeEeeC
Q 012725 286 GSEALGSHLRIRPR 299 (457)
Q Consensus 286 G~e~LGS~L~i~~~ 299 (457)
|--|-|..+.|.|.
T Consensus 198 ~~~C~GC~~~lppq 211 (256)
T 3na7_A 198 KQACGGCFIRLNDK 211 (256)
T ss_dssp TTBCTTTCCBCCHH
T ss_pred CCccCCCCeeeCHH
Confidence 88898988888775
No 7
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.03 E-value=47 Score=32.69 Aligned_cols=38 Identities=13% Similarity=0.222 Sum_probs=21.9
Q ss_pred ccchHHHHHHHHHHHHHhHHHHHHHHHHH-Hhhhhcccc
Q 012725 241 MDMEHELHALRTQIREKSVLSLKIQKELA-MNKRAEENK 278 (457)
Q Consensus 241 MDME~El~~LR~ql~EKs~~~v~L~KEL~-~~kr~een~ 278 (457)
..||..++.-++++.|-..+--++.+|+. +.....+|.
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~ 585 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNP 585 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34566666666666666666666666664 445555554
No 8
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=69.43 E-value=7.6 Score=31.42 Aligned_cols=67 Identities=18% Similarity=0.350 Sum_probs=45.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHH
Q 012725 179 NQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQI 254 (457)
Q Consensus 179 ~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql 254 (457)
..+++....||.+++.++..+..-+++.-..-+..+ -|+-.|++.|.+|-=.| +|+|..|.+|...|
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E-~d~~~LrkdvD~a~l~r--------~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAE-NTLQSFRQDVDNASLAR--------LDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTTHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 357788889999999999999888876444333222 36667777777665444 46666666665544
No 9
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=68.10 E-value=46 Score=30.30 Aligned_cols=72 Identities=14% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHH
Q 012725 126 GRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFA-CAEIESARAVVQRFGEALE 204 (457)
Q Consensus 126 GrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A-~aEIE~ARAaV~Rve~ale 204 (457)
|-+++||++.+.--+.++ .|.+...++.|.+.-+. .--.++++.+++-..+. -.+.+...+++..++++|.
T Consensus 118 ~Ls~eeI~~m~~~a~~~~-----~eD~~~r~~~e~kn~le---~~i~~~~~~l~~~~~~l~~~~k~~i~~~l~~~~~~L~ 189 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANA-----EADRKFEELVQTRNQGD---HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALK 189 (219)
T ss_dssp SCCHHHHHHHHHHHHHTH-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhh-----hccHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHHHHHHh
Confidence 567778877766555543 34444444444442221 11223333333322121 3344555556666666665
Q ss_pred H
Q 012725 205 E 205 (457)
Q Consensus 205 E 205 (457)
.
T Consensus 190 ~ 190 (219)
T 4e81_A 190 G 190 (219)
T ss_dssp S
T ss_pred c
Confidence 4
No 10
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=66.43 E-value=65 Score=40.36 Aligned_cols=14 Identities=7% Similarity=0.098 Sum_probs=9.2
Q ss_pred cchhhhHHhhhhch
Q 012725 73 LSVRDLASKFDKNL 86 (457)
Q Consensus 73 LSVRDLA~KFEKgl 86 (457)
.||.+++.+|=+.+
T Consensus 1873 ~sv~~~s~~~~~~~ 1886 (3245)
T 3vkg_A 1873 QTIGEANIRLLKRQ 1886 (3245)
T ss_dssp HHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHh
Confidence 46777777765544
No 11
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=62.90 E-value=54 Score=32.51 Aligned_cols=40 Identities=13% Similarity=0.333 Sum_probs=27.8
Q ss_pred cCCcEEEEEecCC---------CCCCCCch-hHHHHHhh------cCCCeeeEEEE
Q 012725 351 SNGQKITVTSAGP---------IESAAGLG-SYVETLLR------KSSSEFNVVIS 390 (457)
Q Consensus 351 ~~G~k~~~~T~GP---------idpAaGL~-~yVEaL~r------k~~tEFNVvi~ 390 (457)
++|.-.+|++-|+ ..|.+|+- .-++.|++ ..+.+|.|.++
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM~g~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS 192 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAE 192 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHHHCTTTSHHHHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred hCCcceEEEEECCCCCCCceEeCCCCCccchhHHHHHHHHHHhhhccCceEEEEEE
Confidence 6999999998776 23456764 45677764 34568888764
No 12
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=62.28 E-value=27 Score=38.78 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=3.8
Q ss_pred CcccCCC
Q 012725 33 KYKLGPD 39 (457)
Q Consensus 33 ~Yk~G~n 39 (457)
.|++|-.
T Consensus 765 ~~~iG~T 771 (1184)
T 1i84_S 765 LYRIGQS 771 (1184)
T ss_dssp TCCBCSS
T ss_pred ceeEcCe
Confidence 4666643
No 13
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=58.68 E-value=2.9 Score=43.29 Aligned_cols=124 Identities=23% Similarity=0.333 Sum_probs=36.4
Q ss_pred HhhhHHHhhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhc--chhhhhhHHH-HHHHHHHH
Q 012725 90 AKLADEAKLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQ--NEGELIQEKF-EVKKLANF 166 (457)
Q Consensus 90 akLs~EaK~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltq--rE~ELiQeK~-EVkKlA~~ 166 (457)
.+|+.|-+.|+.|-=++..|-.+|+..=+..+ +..+++.++-...+-|+-++-+ .|.++++.|+ |..-.-.-
T Consensus 321 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~ 395 (575)
T 2i1j_A 321 EKLQLEIAARERAEKKQQEYQDRLRQMQEEME-----RSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQR 395 (575)
T ss_dssp TTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHC-------------------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888888777765 4566777777777777665543 3344443332 22222222
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHh
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEARR 230 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEARR 230 (457)
|...+++ -.+||..-.+++..+.+-+.|+.++.+..+. +.+.|++|+++||+
T Consensus 396 l~~~~~~----~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~--------e~~~~~~~~~~a~~ 447 (575)
T 2i1j_A 396 LEETKNM----EAAERQKLEDEIRAKQEEVSRIQQEVELKDS--------ETRRLQEEVEDARR 447 (575)
T ss_dssp ----------------------------------------------------------CHHHHH
T ss_pred HHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 2222222 2456666666777777777777766555443 34445555555544
No 14
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=57.96 E-value=33 Score=31.41 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=25.8
Q ss_pred hhhcchhhhhhHHHHHHHHHHHHHH--hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 012725 145 KLTQNEGELIQEKFEVKKLANFLKQ--ASEDAKKLVNQEKSFACAEIESARAVVQRFGEALE 204 (457)
Q Consensus 145 qltqrE~ELiQeK~EVkKlA~~lKq--ASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~ale 204 (457)
+|.+-+.++-.-+.+..+...++++ +|...-.-...+...|+++++.+++.+...+..|+
T Consensus 84 ~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 84 QRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555555543 22211111222333445555555555554444443
No 15
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=54.73 E-value=48 Score=32.02 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=42.9
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcch----------hHHHHHHHHHHH-Hhhhh
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQ----------DVERLVDEIQEA-RRIKR 233 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kq----------d~e~L~~EVqEA-RRIKm 233 (457)
..|+.|.+.+.+++++-++.+ |+++.++. +++-|.|-.+..+..++| =++-|.++|-.+ .||+
T Consensus 373 eal~~~~~~i~~~l~~~~~~~--e~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 446 (471)
T 3mq9_A 373 EALKDAQTRITAARDGLRAVM--EARNVTHL---LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVE- 446 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhHHHH--HhhhHHHH---HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHH-
Confidence 345555666666665544333 33333333 333444444443333333 134455554332 2444
Q ss_pred ccCCcccccchHHHHHHHHHHHHHhHHHHHH
Q 012725 234 LHQPSKVMDMEHELHALRTQIREKSVLSLKI 264 (457)
Q Consensus 234 LH~PSKvMDME~El~~LR~ql~EKs~~~v~L 264 (457)
..|.||..|-.+|.+-+...-.+
T Consensus 447 --------~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 447 --------ELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777777777777766554433
No 16
>4h7n_A Aldehyde dehydrogenase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ALDH_ddaldh, COG1012, glyco_hydro_97; 2.00A {Anabaena variabilis}
Probab=52.51 E-value=57 Score=32.33 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=52.0
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 012725 97 KLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKK 176 (457)
Q Consensus 97 K~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk 176 (457)
.|+....=||..+|+++.++|+ .|+|++-++++. .=|.+..+..||...+..+.....-+.+
T Consensus 43 ~W~~~~~~~R~~~L~~~a~~l~--------~~~~ela~~~~~----------e~Gk~~~~~~ev~~~~~~~~~~~~~~~~ 104 (474)
T 4h7n_A 43 RWQELGVEGRITTLQQWKQAIL--------SRREQLTEALVN----------DTGRLSITVLEIDSFLASIDRWCGLAPE 104 (474)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHH--------TTHHHHHHHHHH----------HHSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH----------HcCCcHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5898888999999999999998 578888776654 2244666778999999998888777777
Q ss_pred HHHH
Q 012725 177 LVNQ 180 (457)
Q Consensus 177 iV~e 180 (457)
+...
T Consensus 105 ~~~~ 108 (474)
T 4h7n_A 105 LLQT 108 (474)
T ss_dssp HHCC
T ss_pred cccc
Confidence 7643
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=50.07 E-value=1.1e+02 Score=30.20 Aligned_cols=28 Identities=29% Similarity=0.407 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 012725 242 DMEHELHALRTQIREKSVLSLKIQKELA 269 (457)
Q Consensus 242 DME~El~~LR~ql~EKs~~~v~L~KEL~ 269 (457)
.+|.|+..|+.++.+.-.....|++|++
T Consensus 541 ~~~~~~~~le~~~~~~~~~~~~l~~e~~ 568 (597)
T 3oja_B 541 DLEQENIALEKQLDNKRAKQAELRQETS 568 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhHHHHHHHhhhhhHHHHHHHHHH
Confidence 3567777888888888777777777775
No 18
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Probab=49.67 E-value=47 Score=27.50 Aligned_cols=69 Identities=12% Similarity=0.138 Sum_probs=36.5
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecc--cccccccCCCCcccceeeeeeecCCcEEEEEec
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISG--ASKLAYAPEPLDVGRVLQADILSNGQKITVTSA 361 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG--Atk~~YAPEP~DVGr~LqadI~~~G~k~~~~T~ 361 (457)
.|..+.|...... .+++.-.+.|||..+..+-+-||.- .....+-++.|. ||+ .+.....+...+|+-.
T Consensus 16 ~G~sVtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~~~~~-~Rf-s~~~~~~~~~~sLtI~ 86 (137)
T 3lh2_H 16 PGSSVTVSCKASG-GSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQ-GRI-TITADRSTSTAYLELN 86 (137)
T ss_dssp SSCCEEEEEEEES-SCSTTSCEEEEEECTTCCCEEEEEEEGGGTEEEECTTTT-TTE-EEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEecC-CcccccEEEEEEECCCCCCEEEEEEEcCCCccccCcccC-CcE-EEEecCCCCEEEEEEC
Confidence 4666766554332 2445678999999885555555541 133333344454 664 2322333444444433
No 19
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=48.47 E-value=1.2e+02 Score=25.24 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 012725 245 HELHALRTQI 254 (457)
Q Consensus 245 ~El~~LR~ql 254 (457)
.++..++.++
T Consensus 174 ~~~~~~~~~~ 183 (284)
T 1c1g_A 174 SDLERAEERA 183 (284)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=47.98 E-value=1.7e+02 Score=32.67 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHH
Q 012725 217 DVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRT 252 (457)
Q Consensus 217 d~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ 252 (457)
.+..|.+|.+..|. .+-|||..+...-+
T Consensus 1024 kv~~L~~e~~~L~q--------q~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A 1024 LVSELKEQNTLLKT--------EKEELNRRIHDQAK 1051 (1080)
T ss_dssp HHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
Confidence 45556666666664 34455554444433
No 21
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=47.45 E-value=2.4e+02 Score=29.11 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=44.2
Q ss_pred HHHHHHHhhcccCCCChhHHH----HHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHH----hhhh
Q 012725 113 LRDALEALRGRMAGRTKEDVE----KAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQ----EKSF 184 (457)
Q Consensus 113 LRd~LesLrGRvaGrnKddVe----eaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~e----ERa~ 184 (457)
++..|+.|+.+| ++|+ ++.-.|.+|-+.|.++|..+..-..-|++....|.+-----+.+|+. .=..
T Consensus 98 V~~~LqeLe~~l-----~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~ 172 (464)
T 1m1j_B 98 VKPVLRDLKDRV-----AKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRV 172 (464)
T ss_dssp HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHhHHHHHHHHH-----HHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 334455555544 3444 45557888888888887765555544555554443221111222221 1111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 012725 185 ACAEIESARAVVQRFGEALEEE 206 (457)
Q Consensus 185 A~aEIE~ARAaV~Rve~aleEq 206 (457)
-+..+++-+.-+++++..+..+
T Consensus 173 L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 173 LRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2344555555555555555443
No 22
>3osk_A Cytotoxic T-lymphocyte protein 4; beta sandwich, homodimer, immunoglobulin superfamily (beta S fold, receptor, signalling, B7-1(CD80), B7-2(CD86); HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 PDB: 2x44_D 1i85_C 1ah1_A* 1i8l_C* 3bx7_C
Probab=46.61 E-value=32 Score=27.31 Aligned_cols=32 Identities=3% Similarity=-0.093 Sum_probs=21.0
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCC
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDG 320 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~g 320 (457)
..|..+.|...-......+.-.+.|||..+..
T Consensus 14 ~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~ 45 (130)
T 3osk_A 14 SSRGIASFVCEYASPGKATEVRVTVLRQADSQ 45 (130)
T ss_dssp CTTSCEEEEEEECCCSSCCEEEEEEEEEETTE
T ss_pred eCCCeEEEEEEecCCCCCceEEEEEEEeCCCC
Confidence 45777777655444333456679999998743
No 23
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=45.10 E-value=1.3e+02 Score=24.82 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=63.1
Q ss_pred chhhHHHHHHHHHHHHhhcccCCC---ChhHHHHHHHHHHHHhhhhhcc----------hhhhhhHHHHHHHHHHHHHHh
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGR---TKEDVEKAISLVEALAVKLTQN----------EGELIQEKFEVKKLANFLKQA 170 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGr---nKddVeeaismVEaLavqltqr----------E~ELiQeK~EVkKlA~~lKqA 170 (457)
=+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++..+..- =-++-++..+.+.++.-|..|
T Consensus 10 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~~~F~~gs~~~~A~p~IW~~~~~F~~~~~~~~~a 89 (127)
T 2ykz_A 10 KYRQSALTLMASHFGRMTPVVKGQAPYDAVQIKANVEVLKTLSALPWAAFGPGTEGGDARPEIWSDAASFKQKQQAFQDN 89 (127)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHTTSSCCCHHHHHHHHHHHHHHHTSSGGGSCTTCCCTTBCTHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhHhhCCCCCCCcccCHHHHhCHHHHHHHHHHHHHH
Confidence 368999999999999999999898 5566777776666666555331 012345778888888888877
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 012725 171 SEDAKKLVNQEKSFACAEIESARAVVQRFGEA 202 (457)
Q Consensus 171 SeDAkkiV~eERa~A~aEIE~ARAaV~Rve~a 202 (457)
.......... . ..+..++++..|++.
T Consensus 90 a~~l~~aA~~---g---D~~~~~~a~~~v~~s 115 (127)
T 2ykz_A 90 IVKLSAAADA---G---DLDKLRAAFGDVGAS 115 (127)
T ss_dssp HHHHHHHHHH---T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---C---CHHHHHHHHHHHHHH
Confidence 7665433311 1 245566677777654
No 24
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=45.07 E-value=81 Score=28.39 Aligned_cols=35 Identities=29% Similarity=0.402 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH-hhHHHHHHHHHhhhhhHHHHHHHH
Q 012725 157 KFEVKKLANFLKQ-ASEDAKKLVNQEKSFACAEIESAR 193 (457)
Q Consensus 157 K~EVkKlA~~lKq-ASeDAkkiV~eERa~A~aEIE~AR 193 (457)
..+++||.+|..| |-+-|..|..+.... ++||.++
T Consensus 14 ~~~i~~m~~fI~qEA~eKA~EI~~kAeeE--~~~ek~~ 49 (233)
T 4efa_E 14 NDELNKMQAFIRKEAEEKAKEIQLKADQE--YEIEKTN 49 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4688999999876 888888887665544 4444444
No 25
>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}
Probab=43.52 E-value=42 Score=26.03 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=23.7
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccce
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEI 325 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 325 (457)
.+|+...+...-...++.+.-.|.|||..+.+....+
T Consensus 13 ~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~ 49 (123)
T 4gjt_B 13 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQEL 49 (123)
T ss_dssp CTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEE
T ss_pred EcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCccee
Confidence 3577666644435455555667999999876555444
No 26
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=43.01 E-value=2e+02 Score=26.35 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=21.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 012725 181 EKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEA 228 (457)
Q Consensus 181 ERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEA 228 (457)
+......+|+.+++-+.+.++-|.. .+...+++.|.+|+.-+
T Consensus 61 ~~~~~e~~i~~~~~ri~~~~~~l~~------v~~~kE~~aL~kEie~~ 102 (256)
T 3na7_A 61 QVSKNEQTLQDTNAKIASIQKKMSE------IKSERELRSLNIEEDIA 102 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------CSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc------cCCHHHHHHHHHHHHHH
Confidence 3444555666666666666555421 12233555555555544
No 27
>3k1k_C Enhancer; nanobody, antibody-complex, chromophore, luminescence, photoprotein, luminescent protein/immune system complex; HET: GYS; 2.15A {Lama pacos} SCOP: b.1.1.1 PDB: 3miq_E* 3ogo_E*
Probab=42.74 E-value=85 Score=24.99 Aligned_cols=38 Identities=18% Similarity=0.391 Sum_probs=23.1
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS 327 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 327 (457)
..|..+.|...... .+.+.-.+.|||..+...-+-|+.
T Consensus 15 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~~ 52 (123)
T 3k1k_C 15 QPGGSLRLSCAASG-FPVNRYSMRWYRQAPGKEREWVAG 52 (123)
T ss_dssp CTTCCEEEEEEEES-SCTTTSCEEEEEECSSSCCEEEEE
T ss_pred CCCCCEEEEEEeeC-CcccccEEEEEEECCCCCCEEEEE
Confidence 35667776554332 235667899999988544444443
No 28
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=42.68 E-value=1.7e+02 Score=29.80 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=11.6
Q ss_pred CCChhHHHHHHHHHHHHh
Q 012725 126 GRTKEDVEKAISLVEALA 143 (457)
Q Consensus 126 GrnKddVeeaismVEaLa 143 (457)
|-+++||++.+.--+.++
T Consensus 506 ~ls~~ei~~~~~~~~~~~ 523 (605)
T 4b9q_A 506 GLNEDEIQKMVRDAEANA 523 (605)
T ss_dssp SCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhhH
Confidence 667888877665544443
No 29
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=41.94 E-value=39 Score=27.99 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHhhhhccCCcccccchH--------------HHHHHHHHHHHHhHHHHHHHHHH
Q 012725 217 DVERLVDEIQEARRIKRLHQPSKVMDMEH--------------ELHALRTQIREKSVLSLKIQKEL 268 (457)
Q Consensus 217 d~e~L~~EVqEARRIKmLH~PSKvMDME~--------------El~~LR~ql~EKs~~~v~L~KEL 268 (457)
|-|+|..||++-| .||=+||+ ||..|+.|+.+|-.+.-.|+-+|
T Consensus 20 ~~E~L~qEi~~Lr--------~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 20 KAEELLQELRHLK--------IKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 7778988888876 36677875 68889999999988888888776
No 30
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.31 E-value=29 Score=25.22 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=17.3
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEE
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
..|..+.+.....+.|. -.|+|||
T Consensus 23 ~~G~~v~l~C~~~g~p~---~~v~W~k 46 (96)
T 2ens_A 23 APGGTVTLTCEVPAQPS---PQIHWMK 46 (96)
T ss_dssp CTTCEEEEECCCSSCSS---CCCCCEE
T ss_pred cCCCeEEEEEEEccCCC---CEEEEEE
Confidence 56777888766666555 3799999
No 31
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=39.74 E-value=1.6e+02 Score=24.33 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=64.3
Q ss_pred chhhHHHHHHHHHHHHhhcccCCC---ChhHHHHHHHHHHHHhhhhhc-------------chhhhhhHHHHHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGR---TKEDVEKAISLVEALAVKLTQ-------------NEGELIQEKFEVKKLANFL 167 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGr---nKddVeeaismVEaLavqltq-------------rE~ELiQeK~EVkKlA~~l 167 (457)
=+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++-.+.. -=-+.-++..+.++++.-|
T Consensus 10 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~~~F~~gs~~g~s~~A~p~IW~~~~~F~~~~~~~ 89 (129)
T 2j8w_A 10 EYRQSAFTLIANHFGRVAAMAQGKAPFDAKVAAENIALVSTLSKLPLTAFGPGTDKGHGTEAKPAVWSDAAGFKAAADKF 89 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHTSGGGSCCTTCCSSTTCCBCTHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHhhhHHhCCCCCCCCCccccCHHHHhCHHHHHHHHHHH
Confidence 368999999999999999999998 666777777777777766632 1112345778888888888
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 012725 168 KQASEDAKKLVNQEKSFACAEIESARAVVQRFGEA 202 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~a 202 (457)
..|.......... . ..+..++++..|++.
T Consensus 90 ~~aa~~L~~aA~~---~---D~~~~~~a~~~v~~s 118 (129)
T 2j8w_A 90 AAAVDKLDAAGKT---G---DFAQIKAAVGETGGA 118 (129)
T ss_dssp HHHHHHHHHHHHH---T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---C---CHHHHHHHHHHHHHH
Confidence 8777655433311 1 245566777777654
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=39.72 E-value=1.2e+02 Score=33.60 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 012725 187 AEIESARAVVQRFGEALEE 205 (457)
Q Consensus 187 aEIE~ARAaV~Rve~aleE 205 (457)
.+++..+.-+..+++.+++
T Consensus 920 ~~~~~Le~~l~ele~elee 938 (1184)
T 1i84_S 920 AKKQELEEILHEMEARIEE 938 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444443333
No 33
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=39.52 E-value=1.1e+02 Score=28.14 Aligned_cols=10 Identities=0% Similarity=0.265 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 012725 245 HELHALRTQI 254 (457)
Q Consensus 245 ~El~~LR~ql 254 (457)
..|+.++.++
T Consensus 136 ~~l~~~~~~l 145 (369)
T 4dk0_A 136 ENIKQAEIEV 145 (369)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 34
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=37.49 E-value=1.3e+02 Score=28.33 Aligned_cols=44 Identities=14% Similarity=0.148 Sum_probs=31.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 181 EKSFACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 181 ERa~A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
+...|+++++.|++-..|.+..++. ...-+++++..+.+++.|+
T Consensus 82 ~l~~a~a~l~~a~~~~~R~~~L~~~-----g~is~~~~~~a~~~~~~a~ 125 (369)
T 1vf7_A 82 DYQSAQANLASTQEQAQRYKLLVAD-----QAVSKQQYADANAAYLQSK 125 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-----TSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC-----CCcCHHHHHHHHHHHHHHH
Confidence 4456777888888888887776653 2344668888888877776
No 35
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.18 E-value=3.4e+02 Score=27.43 Aligned_cols=76 Identities=8% Similarity=0.157 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-------hhHHHHHHHHHHHHhhhhccCCcccccchHHHHHHHHHHHHH
Q 012725 185 ACAEIESARAVVQRFGEALEEEEKNSPKSKT-------QDVERLVDEIQEARRIKRLHQPSKVMDMEHELHALRTQIREK 257 (457)
Q Consensus 185 A~aEIE~ARAaV~Rve~aleEqe~~s~~s~k-------qd~e~L~~EVqEARRIKmLH~PSKvMDME~El~~LR~ql~EK 257 (457)
...||++.-..|..+-.+++.--+-.+...+ |....|.+|+.+--. .+-..+.+|+.|+.++...
T Consensus 46 ~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~--------~~~~~~~~i~~l~~~~~~~ 117 (409)
T 1m1j_C 46 LLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN--------TILAHENTIQQLTDMHIMN 117 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH--------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH--------HhcchHHHHHHHHHHHHhh
Confidence 3446777777777777777765433222222 233344444433211 2333455667777666655
Q ss_pred hHHHHHHHHHH
Q 012725 258 SVLSLKIQKEL 268 (457)
Q Consensus 258 s~~~v~L~KEL 268 (457)
.....+|+..+
T Consensus 118 ~~~i~~l~~~i 128 (409)
T 1m1j_C 118 SNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 36
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=36.98 E-value=99 Score=31.95 Aligned_cols=92 Identities=21% Similarity=0.107 Sum_probs=55.9
Q ss_pred HHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhHHHHHHH
Q 012725 113 LRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFACAEIESA 192 (457)
Q Consensus 113 LRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~aEIE~A 192 (457)
.-.+-++|+-| |-+.++|++-+++-+ --.++.++=.+|-.++-++.|--.-+|.+-+|+..+..+-+ .-..+|...
T Consensus 15 ~~~v~~~~~~R--~~~~~~~~~~~~ld~-~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~-~l~~~i~~l 90 (485)
T 3qne_A 15 PEIIKASQKKR--GDSVELVDEIIAEYK-EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKE-KLSNEKKEI 90 (485)
T ss_dssp HHHHHHHHHHH--TCCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH-HHHHHHHHH
Confidence 33344555555 233455777666533 33444444445555666665544456777778877776655 446788888
Q ss_pred HHHHHHHHHHHHHHHh
Q 012725 193 RAVVQRFGEALEEEEK 208 (457)
Q Consensus 193 RAaV~Rve~aleEqe~ 208 (457)
.+.+..+++.|++.-.
T Consensus 91 e~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 91 IEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888876543
No 37
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=36.87 E-value=21 Score=28.43 Aligned_cols=21 Identities=43% Similarity=0.447 Sum_probs=17.8
Q ss_pred ccccchHHHHHHHHHHHHHhH
Q 012725 239 KVMDMEHELHALRTQIREKSV 259 (457)
Q Consensus 239 KvMDME~El~~LR~ql~EKs~ 259 (457)
|--.||-|=+.+|++|+.|..
T Consensus 31 Kh~kME~ERE~mRQ~IRdKY~ 51 (63)
T 3rk3_E 31 KYAKMEAEREAVRQGIRDKYG 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445799999999999999863
No 38
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=36.27 E-value=1.8e+02 Score=23.94 Aligned_cols=92 Identities=16% Similarity=0.236 Sum_probs=66.0
Q ss_pred chhhHHHHHHHHHHHHhhcccCCC---ChhHHHHHHHHHHHHhhhhhcc---------h----hhhhhHHHHHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGR---TKEDVEKAISLVEALAVKLTQN---------E----GELIQEKFEVKKLANFL 167 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGr---nKddVeeaismVEaLavqltqr---------E----~ELiQeK~EVkKlA~~l 167 (457)
=+|+.++|.++..+..|.+=+-|. +.+.|..+...+..++-.+..- . -+.-++..+.++++.-|
T Consensus 6 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~s~A~p~IW~~~~~F~~~~~~~ 85 (125)
T 1mqv_A 6 AQRKAILKQMGEATKPIAAMLKGEAKWDQAVVQKSLAAIADDSKKLPALFPADSKTGGDTAALPKIFEDKAKFDDLFAKL 85 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHGGGSCCGGGTTCSSCCBCGGGGGSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhHhhCCCCCCCCCCCccCHHHHhCHHHHHHHHHHH
Confidence 368999999999999999999888 6677888887777777666431 1 12335778899999888
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 012725 168 KQASEDAKKLVNQEKSFACAEIESARAVVQRFGEAL 203 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~al 203 (457)
..|........ . ..+..++++..|++.-
T Consensus 86 ~~aa~~l~~aa-~-------d~~~~~~a~~~v~~sC 113 (125)
T 1mqv_A 86 AAAATAAQGTI-K-------DEASLKANIGGVLGNC 113 (125)
T ss_dssp HHHHHHHHHHC-C-------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-c-------CHHHHHHHHHHHHhHH
Confidence 88776654333 1 3555677777776653
No 39
>3r0m_A Llama VHH A12; IG domain, immune system; 1.50A {Lama glama} PDB: 3rjq_B* 1g9e_A 1hcv_A 1shm_A 3qxw_A 3qxv_A
Probab=35.82 E-value=1e+02 Score=25.70 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=22.5
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|...... .+.+.-.+.|||..+...-.-|+
T Consensus 14 ~G~svtL~C~~s~-~~~~~~~v~WyrQ~pg~~~~~L~ 49 (143)
T 3r0m_A 14 AGGSLRLSCTASG-RISSSYDMGWFRQAPGKEREFVA 49 (143)
T ss_dssp TTCCEEEEEEESS-CCCTTEEEEEEEECTTSCCEEEE
T ss_pred cCCCEEEEEEeeC-CCcCCcEEEEEEECCCCCCEEEE
Confidence 4667777554332 24567789999998854444443
No 40
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=35.20 E-value=3.3e+02 Score=28.52 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 012725 186 CAEIESARAVVQRFGEALEEEEK 208 (457)
Q Consensus 186 ~aEIE~ARAaV~Rve~aleEqe~ 208 (457)
++.=|+|++....+++-..++++
T Consensus 493 ~~~~e~~~~~~~~l~~~~~~~~~ 515 (592)
T 1f5n_A 493 RVKAESAQASAKMLHEMQRKNEQ 515 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445666666666665555444
No 41
>3k81_A Single strand antibody VHH domain; krepa6, single domain antibody, immune system, RNA BIND protein; 3.40A {Lama glama}
Probab=34.67 E-value=1.8e+02 Score=23.56 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=24.8
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS 327 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 327 (457)
..|..+.|...... .+++...+.|||..+...-+-||.
T Consensus 13 ~~G~~VtL~C~~s~-~~~~~~~v~WyrQ~pg~~~~~L~~ 50 (127)
T 3k81_A 13 QAGGSLRLSCVVSG-ITFASEAWGWYRRAPGKQRELIAA 50 (127)
T ss_dssp CBTCEEEEEEBCSC-CCCSSSCEEEEEECSSSCEEEEEE
T ss_pred ccCCCEEEEEEecC-CCccCcEEEEEEECCCCCCEEEEE
Confidence 45777877655433 356678899999987444344443
No 42
>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}
Probab=34.28 E-value=26 Score=27.21 Aligned_cols=28 Identities=29% Similarity=0.154 Sum_probs=21.8
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARA 194 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARA 194 (457)
+|.|-.+|+++|++....|..=|+.||+
T Consensus 21 IKeAE~~A~~iVeeA~~ea~~ii~eAre 48 (56)
T 2k6i_A 21 VKLAEEQAVKEIEEAKNRAEQIKAEAIE 48 (56)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887777777775
No 43
>2oi9_C V beta, T cell receptor beta chain; TCR, MHC, immune system; 2.35A {Mus musculus} PDB: 2e7l_C
Probab=33.51 E-value=46 Score=26.16 Aligned_cols=33 Identities=15% Similarity=0.326 Sum_probs=20.0
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|... ++.+.-.|.|||..+.++-.-|+
T Consensus 15 ~G~~vtL~C~----~~~~~~~v~W~rq~~g~~~~~l~ 47 (121)
T 2oi9_C 15 TGEKVTLSCN----QTNNHNNMYWYRQDTGHELRLIY 47 (121)
T ss_dssp TTCCEEEEEE----ESSCCSEEEEEEESSSSCCEEEE
T ss_pred CCCcEEEEEE----ecCCCCeEEEEEECCCCCcEEEE
Confidence 4666665443 23356789999998754444343
No 44
>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}
Probab=33.42 E-value=1.3e+02 Score=23.14 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=21.2
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|...... .+.+.-.+.|||..+..+-.-|+
T Consensus 12 ~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 47 (115)
T 3k74_B 12 PGGSLRLSCAASG-FTFNNYWMYWVRRAPGKGLEWVS 47 (115)
T ss_dssp TTCCEEEEEEECS-SCGGGSCEEEEEECTTCCEEEEE
T ss_pred CCCcEEEEEEEeC-ccccCCEEEEEEECCCCCeEEEE
Confidence 4666666544332 23456789999988754434443
No 45
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=33.22 E-value=35 Score=25.84 Aligned_cols=37 Identities=16% Similarity=0.390 Sum_probs=22.4
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|...-....+...-.+.|||..+.++-.-+|
T Consensus 12 ~G~~v~L~C~~~~~~~~~~~~v~W~rq~~~~~~~~l~ 48 (116)
T 3bj9_1 12 LGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLL 48 (116)
T ss_dssp TTCCEEEEEEECSSSCGGGCCEEEEEECTTSCCEEEE
T ss_pred CCCcEEEEEEeecCccCCCceEEEEEeCCCCCcEEEE
Confidence 4666666554443333456789999988754434444
No 46
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.47 E-value=41 Score=24.28 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=15.9
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEE
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
..|+.+.+.....+.|.. .|.|||
T Consensus 21 ~~G~~~~l~C~~~g~p~p---~v~W~~ 44 (100)
T 2edj_A 21 AVDGTALLKCKATGDPLP---VISWLK 44 (100)
T ss_dssp ESSSEEEECCEEECSSCC---EEEEEE
T ss_pred cCCCcEEEEEEEEEcCCC---EEEEEE
Confidence 357777776555555543 499999
No 47
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=31.93 E-value=62 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhH
Q 012725 110 LKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFAC 186 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 186 (457)
-||+|-+.+.+||. .|+||+...+. +=|.|++.-.|+++...+||.
T Consensus 10 pkK~r~va~~IrG~-------~v~eAl~~L~f------------------------~pkkaa~~v~klL~sA~aNA~ 55 (110)
T 2ftc_M 10 KDKMWYLAKLIRGM-------SIDQALAQLEF------------------------NDKKGAKIIKEVLLEAQDMAV 55 (110)
T ss_pred HHHHHHHHHHHcCC-------cHHHHHHHHHH------------------------CCHHHHHHHHHHHHHHHHhHH
Confidence 58999999999986 58889888763 456677777788887777764
No 48
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=31.48 E-value=1e+02 Score=31.07 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=51.6
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCC-hhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGRT-KEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEK 182 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGrn-KddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eER 182 (457)
||-..+..+.-.+-++|+-|-.. + -+.|++.+++-+- -.++.++=.+|-.++-++.|--.-+|...+|+..+.++-+
T Consensus 2 ld~~~~r~n~~~~~~~~~~R~~~-~~~~~~~~~~~l~~~-~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~ 79 (455)
T 2dq0_A 2 LDIKLIRENPELVKNDLIKRGEL-EKVKWVDEILKLDTE-WRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSR 79 (455)
T ss_dssp CCHHHHHHCHHHHHHHHHHHTCG-GGTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHH
T ss_pred CCHHHHHhCHHHHHHHHHHhCCC-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 34333444444444555555211 2 2235555554322 2222222233334444443333334555677777766655
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 012725 183 SFACAEIESARAVVQRFGEALEEEE 207 (457)
Q Consensus 183 a~A~aEIE~ARAaV~Rve~aleEqe 207 (457)
. ...+|....+....+++.|++.-
T Consensus 80 ~-~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 80 E-IVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46778888888888888887643
No 49
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=31.06 E-value=2.3e+02 Score=23.54 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=58.5
Q ss_pred chhhHHHHHHHHHHHHhhcccCCCChhHHH---HHHHHHHHHhhhhhcch--------h------hhhhHHHHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGRTKEDVE---KAISLVEALAVKLTQNE--------G------ELIQEKFEVKKLANF 166 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGrnKddVe---eaismVEaLavqltqrE--------~------ELiQeK~EVkKlA~~ 166 (457)
=+|+.++|.++..+..|.+=+-|...-|-+ .+..-+..++..+.=-+ + ++-++..+.++++.-
T Consensus 8 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~a~~~~F~~gs~~~~~~g~s~A~p~IW~~~~~F~~~~~~ 87 (129)
T 1cpq_A 8 EAREAYFKSLGGSMKAMTGVAKAFDAEAAKVEAAKLEKILATDVAPLFPAGTSSTDLPGQTEAKAAIWANMDDFGAKGKA 87 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCCGGGCCTTCSTTTSTTTCCBCTHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhcccCCCCCCCcccccCCccccCHHHHhCHHHHHHHHHH
Confidence 368999999999999999999999554544 44444444433330011 1 234577888888888
Q ss_pred HHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 012725 167 LKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEA 202 (457)
Q Consensus 167 lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~a 202 (457)
|..|....-..... . ..+..++++..|++.
T Consensus 88 ~~~aa~~L~~aA~~---g---D~~~~~~a~~~v~~~ 117 (129)
T 1cpq_A 88 MHEAGGAVIAAANA---G---DGAAFGAALQKLGGT 117 (129)
T ss_dssp HHHHHHHHHHHHHH---T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc---C---CHHHHHHHHHHHHhH
Confidence 88776654332211 1 245566677777654
No 50
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=31.04 E-value=32 Score=24.76 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=15.7
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEE
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
..|+.+.+.....+.|.. .|+|||
T Consensus 16 ~~G~~~~l~C~~~g~p~p---~i~W~~ 39 (91)
T 3bfo_A 16 MPGSTLVLQCVAVGSPIP---HYQWFK 39 (91)
T ss_dssp CTTSCEEEECEEECSSCC---EEEEEE
T ss_pred cCCCcEEEEEEeccCCCC---EEEEEc
Confidence 356666666554555543 899999
No 51
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.99 E-value=1.4e+02 Score=31.36 Aligned_cols=43 Identities=16% Similarity=0.185 Sum_probs=20.5
Q ss_pred HHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHhcCCCCcch
Q 012725 174 AKKLVNQEKSFAC---AEIESARAVVQRFGEALEEEEKNSPKSKTQ 216 (457)
Q Consensus 174 AkkiV~eERa~A~---aEIE~ARAaV~Rve~aleEqe~~s~~s~kq 216 (457)
+-|-+++||+.|. +|-+..+.--...++.++.|++..+..-+|
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~q 530 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 530 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555332 233333333334555566666665555555
No 52
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=30.67 E-value=1.5e+02 Score=21.22 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=31.0
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEe--eeCCCccceecccccccccCCCCcccceee
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRV--SLDGSQKEIISGASKLAYAPEPLDVGRVLQ 346 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv--~~~gsk~E~IsGAtk~~YAPEP~DVGr~Lq 346 (457)
..|..+.+.....+. -.|.||+- ....+.+-.+.+.+=.+....+-|-|.|-=
T Consensus 14 ~~G~~~~l~C~~~~~-----p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 68 (95)
T 4hwu_A 14 APGESLELQCMLKDA-----AVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYAC 68 (95)
T ss_dssp CTTSCEEEECCCCTT-----CEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEE
T ss_pred CCCCEEEEEEEeCCC-----CEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEE
Confidence 357777777655542 48999981 111233334444454556667778887753
No 53
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=30.50 E-value=35 Score=26.65 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=22.1
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCc
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQ 322 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk 322 (457)
.+|..+.+...-.+.|+-..-.|+|||-......
T Consensus 12 ~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~ 45 (218)
T 4frw_A 12 VLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGA 45 (218)
T ss_dssp ETTSCEEECCEECCCTTCEEEEEEEEEECSSSCE
T ss_pred EcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCc
Confidence 3577777765555556555557999997654443
No 54
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=30.30 E-value=2.4e+02 Score=23.46 Aligned_cols=92 Identities=11% Similarity=0.018 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHHHHHhhcccCCC---ChhHHHHHHHHHHHHh-hhh-------h---cch-----hhhhhHHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGR---TKEDVEKAISLVEALA-VKL-------T---QNE-----GELIQEKFEVKKLA 164 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGr---nKddVeeaismVEaLa-vql-------t---qrE-----~ELiQeK~EVkKlA 164 (457)
-+|+.++|.++..+..|.+=+-|. +.+.|..+..-+..++ ..+ | ..- -+.-++..+.+.++
T Consensus 8 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~l~~~ag~~~~~~F~~gs~~~~~~~s~Akp~IW~~~~~F~~~~ 87 (130)
T 1gqa_A 8 EARKGYFSLVALEFGPLAAMAKGEMPYDAAAAKAHASDLVTLTKYDPSDLYAPGTSADDVKGTAAKAAIWQDADGFQAKG 87 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHSCGGGGGCTTCSTTTSSSCCBCTHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhhhhHhhCCCCCccccCCCcccCHHHHhCHHHHHHHH
Confidence 368999999999999999999898 6667777777777777 555 2 110 12345778888888
Q ss_pred HHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 012725 165 NFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEA 202 (457)
Q Consensus 165 ~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~a 202 (457)
.-|..|....... .... .+..++++..|++.
T Consensus 88 ~~~~~aa~~l~~a---a~~g----~~~~~~a~~~v~~s 118 (130)
T 1gqa_A 88 MAFFEAVAALEPA---AGAG----QKELAAAVGKVGGT 118 (130)
T ss_dssp HHHHHHHHHHHHH---HTSC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHhc----HHHHHHHHHHHHhH
Confidence 8888776654332 2222 45566677777654
No 55
>3eak_A NBBCII10-FGLA; antibody, nanobody, humanization, VHH domain, immune system; 1.95A {Camelus dromedarius} SCOP: b.1.1.1
Probab=30.22 E-value=1.2e+02 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=23.1
Q ss_pred cccceeeEeeCCCCC--CCCCCceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTA--PSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~--~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|....... ++.+.-.+.|||..+...-+-|+
T Consensus 13 ~~G~~vtL~C~~s~~~~~~~~~~~v~WyrQ~pg~~~~~L~ 52 (137)
T 3eak_A 13 QPGGSLRLSCAASGGSEYSYSTFSLGWFRQAPGQGLEAVA 52 (137)
T ss_dssp CTTCCEEEEEEEESCTTSCGGGSEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEeEecCCccccccCcEEEEEEECCCCCCEEEE
Confidence 346667665543322 14566789999998854444443
No 56
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Probab=30.14 E-value=1.2e+02 Score=23.08 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=22.1
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecc
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISG 328 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 328 (457)
.|..+.|.....+ .+.-.|.|||..+.+.-.-+|..
T Consensus 15 ~G~~vtL~C~~~~---~~~~~v~W~rq~~~~~~~~l~~~ 50 (112)
T 1fo0_B 15 RGQAVNLRCILKN---SQYPWMSWYQQDLQKQLQWLFTL 50 (112)
T ss_dssp TTCCEEEEEEESC---TTCCEEEEEEECTTCCEEEEEEC
T ss_pred cCCcEEEEEEeCC---CCCceEEEEEECCCCCCEEEEEE
Confidence 4667766554332 23457999999875444555543
No 57
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=29.62 E-value=36 Score=30.36 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=33.4
Q ss_pred eEEEeeeCCCc--------cceecccccccccCCCCcccceeeeeeecCCcEEEE
Q 012725 312 QWYRVSLDGSQ--------KEIISGASKLAYAPEPLDVGRVLQADILSNGQKITV 358 (457)
Q Consensus 312 QWyRv~~~gsk--------~E~IsGAtk~~YAPEP~DVGr~LqadI~~~G~k~~~ 358 (457)
+||=|..+|-. .-++-|-.||.|.|. .|.|.++ |+.|.+++.+
T Consensus 17 ~w~viDA~g~~LGRLAs~iA~~L~GKhKp~ytP~-~D~Gd~V---VViNaeki~~ 67 (148)
T 2ftc_H 17 IWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHAL-SDCGDHV---VIMNTRHIAF 67 (148)
T ss_pred cEEEEeCCCCchHHHHHHHHHHHhccCCCCcCcc-ccCCCEE---EEEeceeeEe
Confidence 69988876533 245789999999998 7999886 5678777776
No 58
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.51 E-value=1.9e+02 Score=24.33 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=0.0
Q ss_pred cccCCCChhHHHHHH
Q 012725 122 GRMAGRTKEDVEKAI 136 (457)
Q Consensus 122 GRvaGrnKddVeeai 136 (457)
|-+|-+|+.|+|.-.
T Consensus 1 ~~ia~knr~eaE~~y 15 (131)
T 3tnu_A 1 GSTAEKNRKDAEEWF 15 (131)
T ss_dssp ---------------
T ss_pred ChHHHHhHHHHHHHH
Confidence 456777777777644
No 59
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=29.32 E-value=1.1e+02 Score=22.10 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=15.9
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEE
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
..|..+.+.....+.|. .|+|||
T Consensus 22 ~~G~~v~l~C~~~g~pp----~i~W~k 44 (95)
T 2ckn_A 22 HPGDLLQLRCRLRDDVQ----SINWLR 44 (95)
T ss_dssp CTTSCEEEECCEESSCC----EEEEEB
T ss_pred cCCCeEEEEEECCCCCC----ceEEEE
Confidence 35777777766555542 899999
No 60
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=29.26 E-value=20 Score=32.81 Aligned_cols=18 Identities=33% Similarity=0.811 Sum_probs=17.0
Q ss_pred ccCCCChhHHHHHHHHHH
Q 012725 123 RMAGRTKEDVEKAISLVE 140 (457)
Q Consensus 123 RvaGrnKddVeeaismVE 140 (457)
||.|+++||.-++|+++-
T Consensus 131 RVtgKkrDDLQ~viallk 148 (163)
T 1in0_A 131 RVTGKSRDDLQAVIQLVK 148 (163)
T ss_dssp EEEESCHHHHHHHHHHHH
T ss_pred EEecCCHHHHHHHHHHHH
Confidence 899999999999999985
No 61
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=29.20 E-value=3.2e+02 Score=24.60 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=11.8
Q ss_pred CCChhHHHHHHHHHHHHhh
Q 012725 126 GRTKEDVEKAISLVEALAV 144 (457)
Q Consensus 126 GrnKddVeeaismVEaLav 144 (457)
|-++++|++.+.-.+.++.
T Consensus 115 ~Ls~eei~~~~~~~~~~~~ 133 (227)
T 1u00_A 115 GLTDSEIASMIKDSMSYAE 133 (227)
T ss_dssp CCCHHHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHhhhc
Confidence 4677777776665555443
No 62
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.14 E-value=3.2e+02 Score=28.17 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=53.3
Q ss_pred hhchhhHHHHHH--HHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHH----------
Q 012725 102 ASLEGHVLLKKL--RDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQ---------- 169 (457)
Q Consensus 102 a~Ler~vLLKkL--Rd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKq---------- 169 (457)
++||-..+-.+. -.+-++|+-|- ...++|++-+++=+. -.++.++=.+|-.++-++.|--.-+|.
T Consensus 6 mmldi~~~r~~~~~~~v~~~~~~R~--~~~~~~d~~~~ld~~-~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~ 82 (484)
T 3lss_A 6 MVLDIQLFRDETGANIIRESQRRRF--ADPDIVDAIIEADKK-WRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSE 82 (484)
T ss_dssp CCCCGGGGGSHHHHHHHHHHHHHTT--CCTTHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------
T ss_pred ccccHHHHHcCCCHHHHHHHHHhcC--CChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 456666666554 33556677663 334457776666433 333333333444444444432222343
Q ss_pred --------------hhHHHHHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012725 170 --------------ASEDAKKL----VNQEKSFACAEIESARAVVQRFGEALEEEEKN 209 (457)
Q Consensus 170 --------------ASeDAkki----V~eERa~A~aEIE~ARAaV~Rve~aleEqe~~ 209 (457)
+-+|+..+ ..+.-..-..+|....+.+..+++.+++.-..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 83 IPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666666 55435566677888888888888888765443
No 63
>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1
Probab=29.10 E-value=1.6e+02 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=9.1
Q ss_pred HHhhHHHHHHHHHhhhhhHHHHH
Q 012725 168 KQASEDAKKLVNQEKSFACAEIE 190 (457)
Q Consensus 168 KqASeDAkkiV~eERa~A~aEIE 190 (457)
+.|-..|..|+++.+..|...++
T Consensus 5 ~~Ar~ea~~Ii~~A~~~a~~~~~ 27 (61)
T 1l2p_A 5 KKAKAEAQVIIEQANKRRSQILD 27 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333333
No 64
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.03 E-value=22 Score=27.16 Aligned_cols=20 Identities=40% Similarity=0.503 Sum_probs=17.1
Q ss_pred ccccchHHHHHHHHHHHHHh
Q 012725 239 KVMDMEHELHALRTQIREKS 258 (457)
Q Consensus 239 KvMDME~El~~LR~ql~EKs 258 (457)
|--.||-|=+.+|++|+.|.
T Consensus 28 Kh~kmE~eRE~mRq~IRdKY 47 (49)
T 1kil_E 28 KYAKMEAEREVMRQGIRDKY 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34579999999999999985
No 65
>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A
Probab=28.86 E-value=1.1e+02 Score=24.91 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=21.5
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccce
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEI 325 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 325 (457)
..|..+.|...... ...+.-.+.|||..+...-.-|
T Consensus 17 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l 52 (136)
T 3tpk_A 17 QPGGSLRLSCTASG-YTFSQEFVIWFRQAPGKEREIV 52 (136)
T ss_dssp CTTCCEEEEEEEEE-SGGGCCEEEEEEECTTSCCEEE
T ss_pred ccCCCEEEEEEEcc-cccCCcEEEEEEECCCCCcEEE
Confidence 45667766554322 1345678999999874443334
No 66
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=28.81 E-value=3e+02 Score=24.26 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 012725 185 ACAEIESARAVVQRFGEALEEEEKNSPKSKTQDVERLVDEIQEAR 229 (457)
Q Consensus 185 A~aEIE~ARAaV~Rve~aleEqe~~s~~s~kqd~e~L~~EVqEAR 229 (457)
|+++++.|+.-..|.+..++ ....-+++++..+.+++.|+
T Consensus 72 a~a~l~~a~~~~~r~~~L~~-----~g~~s~~~~~~a~~~~~~a~ 111 (277)
T 2f1m_A 72 AQAAANIAQLTVNRYQKLLG-----TQYISKQEYDQALADAQQAN 111 (277)
T ss_dssp HHHHHHHHHHHHHHHHTTTT-----STTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-----cCCcCHHHHHHHHHHHHHHH
Confidence 34444455544444433322 23344567777776666553
No 67
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=28.71 E-value=1.4e+02 Score=25.86 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=26.7
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 012725 162 KLANFLKQASEDAKKLVNQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 162 KlA~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~R 198 (457)
+....+..|-+.|.+|+++.++.|.+..+.+.....+
T Consensus 14 ~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~ 50 (187)
T 3v6i_A 14 EIQALLQEAEAKAEAVKREAEEKAKALLQARERALEA 50 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888887777776655443
No 68
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=27.78 E-value=34 Score=26.88 Aligned_cols=25 Identities=8% Similarity=0.165 Sum_probs=18.4
Q ss_pred HhHHHhhcccchhhhHHhhhhchhH
Q 012725 64 VQLSEQHKRLSVRDLASKFDKNLTA 88 (457)
Q Consensus 64 a~L~~q~kRLSVRDLA~KFEKgl~~ 88 (457)
-+++.++.++||.|||..|.=-..|
T Consensus 8 l~~L~~~g~vsv~eLa~~l~VS~~T 32 (78)
T 1xn7_A 8 RDLLALRGRMEAAQISQTLNTPQPM 32 (78)
T ss_dssp HHHHHHSCSBCHHHHHHHTTCCHHH
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHH
Confidence 3577888899999999988543333
No 69
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}
Probab=26.95 E-value=1.4e+02 Score=23.16 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=22.0
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|...... .+.+.-.+.|||..+...-+-||
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~~~Wyrq~~g~~~~~l~ 49 (120)
T 3iy0_H 13 APGGGVKLSCGASG-YTFTNYDMNWVRQRPGAGLEWIG 49 (120)
T ss_dssp CSSCCEEEEEEEES-SCGGGSCEEEEEEETTTEEEEEE
T ss_pred cCCCCEEEEEEeEC-CCccCCeEEEEEECCCCCCEEEE
Confidence 34666666544322 23456789999998744334443
No 70
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=26.68 E-value=94 Score=27.59 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=6.8
Q ss_pred eeccceeeeeeeccccccccccchhhhcccCccc
Q 012725 414 LCRGWITNLEKYITHQCSCAELEVTAMLQPSHCF 447 (457)
Q Consensus 414 L~KG~~t~Ak~YSssmqLCG~~~~~~~~~~~~~~ 447 (457)
|.-|....+++.... .-.+++-|..||
T Consensus 244 l~~G~~~~v~i~~~~-------~~~~l~vP~~~~ 270 (277)
T 2f1m_A 244 MMPGMFVRARLEEGL-------NPNAILVPQQGL 270 (277)
T ss_dssp CCSSCEEEEEEC----------------------
T ss_pred cCCCCEEEEEEEecc-------cCCeEEcCHhHh
Confidence 445666666632221 123455566665
No 71
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=26.68 E-value=1.8e+02 Score=21.86 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=27.3
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec---ccccccccCCCCcccc
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS---GASKLAYAPEPLDVGR 343 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is---GAtk~~YAPEP~DVGr 343 (457)
.|..+.|..... +..+.-.|.|||..+.++-.-+|. +..++.|.|+ +.-||
T Consensus 13 ~G~~v~L~C~~~--~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~-~~~~R 66 (111)
T 2qhl_A 13 RGENVTMECSMS--KVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEG-FKDSR 66 (111)
T ss_dssp TTCCEEECCBCT--TCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTT-CCCTT
T ss_pred CCCCEEEEEEcc--CCcccceEEEEEecCCCCCEEEEEEeccCCccccccC-CCCCc
Confidence 466666654433 122356799999987544444442 2234455544 22355
No 72
>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A
Probab=26.15 E-value=70 Score=25.49 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=23.8
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS 327 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 327 (457)
..|..+.|....... +++...+.|||..+..+-+-+|.
T Consensus 13 ~~G~~vtL~C~~s~~-~~~~~~v~Wyrq~~g~~~~~li~ 50 (123)
T 3t0v_A 13 TPGQKVTIFCSGSSS-NVEDNSVYWYQQFPGTTPKVLIY 50 (123)
T ss_dssp CTTCCEEEEEECCTT-TTTTSCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEecCCC-ccCCCeEEEEEECCCCCCEEEEE
Confidence 357777776554432 34567899999887544444554
No 73
>2p45_B Antibody CAB-RN05; seMet phasing, camelid single-domain antibody, VHH, RNAse A, yeast surface display, hydrolase/immune system complex; 1.10A {Camelus dromedarius} PDB: 2p46_B 2p47_B 2p48_B 2p44_B 2p49_B 2p42_B 2p43_B 1bzq_K 3qsk_B 2p4a_B 1op9_A 1sjx_A 3qxt_A* 3qxu_A 3eba_A
Probab=25.71 E-value=76 Score=24.45 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=21.0
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|....... ..+.-.+.|||..+...-.-+|
T Consensus 16 ~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~~~~~~~l~ 51 (123)
T 2p45_B 16 AGGSLRLSCAASGY-AYTYIYMGWFRQAPGKEREGVA 51 (123)
T ss_dssp TTCCEEEEEEEESC-SSCCSEEEEEEECTTSCCEEEE
T ss_pred CCCCEEEEEEecCc-cCcCcEEEEEEECCCCCcEEEE
Confidence 46666665443321 2346789999998744333444
No 74
>3qyc_A VH domain of IGG molecule; immunoglobulin V domain fold, antibody, immune system; 1.60A {Homo sapiens} PDB: 1ieh_A 1ohq_A 2uzi_H*
Probab=25.63 E-value=1.4e+02 Score=24.83 Aligned_cols=36 Identities=19% Similarity=0.291 Sum_probs=22.6
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccce
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEI 325 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~ 325 (457)
..|..+.|...... .+++.-.+.|||..+..+-+-|
T Consensus 15 ~~G~svtL~C~~s~-~~~~~~~v~WyrQ~~g~~~~~L 50 (146)
T 3qyc_A 15 KPGGSLRLSCAASG-VRLSAYDMAWVRQAPGKGLEWV 50 (146)
T ss_dssp CTTCCEEEEEEEES-SCGGGCCEEEEEECTTSCEEEE
T ss_pred CCCCCEEEEEEeeC-CCcCCCEEEEEEECCCCCcEEE
Confidence 45777777554332 2345678999999885444444
No 75
>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A
Probab=24.66 E-value=49 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.392 Sum_probs=21.0
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|........ +.-.|.|||..+.++-.-+|
T Consensus 15 ~G~~v~L~C~~~~~~--~~~~v~W~rq~~~~~~~~l~ 49 (115)
T 2otu_A 15 LGASAKLTCTLSSQH--STYTIEWYQQQPLKPPKYVM 49 (115)
T ss_dssp TTCCEEEEEEECGGG--TTCCEEEEEECTTSCCEEEE
T ss_pred CCCCEEEEEEecCCC--CCeEEEEEEeCCCCCceEEE
Confidence 566676655433322 45679999988754444444
No 76
>2wzp_D Camelid VHH5; baseplate, viral protein; 2.60A {Lama glama} PDB: 2bse_D
Probab=24.59 E-value=65 Score=24.87 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=21.4
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|...... .+.+.-.+.|||..+..+-.-++
T Consensus 14 ~G~~vtL~C~~~~-~~~~~~~v~W~rq~~g~~~~~l~ 49 (123)
T 2wzp_D 14 AGGSLRLSCTASR-RTGSNWCMGWFRQLAGKEPELVV 49 (123)
T ss_dssp TTCCEEEEEEESS-CCSSSEEEEEEECCSSSSCEEEE
T ss_pred CCCcEEEEEEecC-CCccCcEEEEEEECCCCCCEEEE
Confidence 5666666554332 23356789999998743333344
No 77
>2x1q_A Gelsolin nanobody; contractIle protein; 1.06A {Lama glama} PDB: 2x1p_A 2xa3_A 3k7u_A 3sn6_N* 3stb_A 2x1o_A 3k80_A 1ol0_A 1u0q_A 1qd0_A* 3ezj_B 3p0g_B* 1mvf_A 1t2j_A
Probab=23.92 E-value=1e+02 Score=24.20 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=20.9
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|...... ...+.-.|.|||..+..+-+-+|
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 49 (127)
T 2x1q_A 13 QPGGSLRLSCAASG-RTFSNYRMGWFRQAPGKEREFVA 49 (127)
T ss_dssp CTTCCEEEEEC-------CCSEEEEEEECTTSCCEEEE
T ss_pred cCCCCEEEEEEeCC-cccCCcEEEEEEECCCCCCEEEE
Confidence 45777777554332 22356789999998854444444
No 78
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=23.86 E-value=51 Score=25.33 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS 327 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 327 (457)
.|..+.|.......+..+.-.+.|||..+.++-.-+|.
T Consensus 14 ~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~ 51 (120)
T 1oaq_L 14 PGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIG 51 (120)
T ss_dssp TTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEE
T ss_pred CCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEE
Confidence 46677766554444322456799999987544444554
No 79
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction, cell membrane, cytoplasm, disulfide bond, hydrolase; 2.60A {Lama glama} SCOP: b.1.1.0
Probab=23.65 E-value=2.2e+02 Score=23.84 Aligned_cols=37 Identities=14% Similarity=0.305 Sum_probs=22.4
Q ss_pred cccceeeEeeCCCCCCCCC-----------CceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTAPSLS-----------KCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlS-----------kcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|...... ..++ .-.|.|||..+..+-+-||
T Consensus 16 ~~G~~vtL~C~~s~-~~~~~~~~~~~~~~~~~~v~WyrQ~pg~~p~~L~ 63 (151)
T 3k3q_A 16 QAGKSLRLSCAISG-LAFDGGAMGSEHRLTAGAMGWFRQAPGKDREFVA 63 (151)
T ss_dssp ETTCCEEEEEEEES-CCCSSTTTCGGGTTSCCEEEEEEECTTSCEEEEE
T ss_pred CCCCCEEEEEEEeC-ccccccccccccccCCeeEEEEEECCCCCcEEEE
Confidence 35777777654332 2233 5589999999854444444
No 80
>3kh6_A Poly [ADP-ribose] polymerase 15; macro, PARP, BAL3, B-aggressive lymphoma protein 3, SGC, structural genomics consortium, alternative splicing; HET: APR; 2.20A {Homo sapiens} PDB: 3v2b_A*
Probab=23.59 E-value=45 Score=30.39 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCcceeeeecceeeEeeccceeeeeeeccccccccccchhhhcccCccccCCCCC
Q 012725 398 SSHSNHCFNVGKLRIKLCRGWITNLEKYITHQCSCAELEVTAMLQPSHCFGKQGRG 453 (457)
Q Consensus 398 ~s~s~hvl~igklRiKL~KG~~t~Ak~YSssmqLCG~~~~~~~~~~~~~~~~~~~~ 453 (457)
|+..+|.+.+|.++|++.+|-+|.. .+.|...|..|++.-|.|
T Consensus 21 ~~~~~~~~~i~~~~i~i~~GDIt~~-------------~vDaIVNaaN~~l~~ggG 63 (199)
T 3kh6_A 21 QSMTAYEMKIGAITFQVATGDIATE-------------QVDVIVNSTARTFNRKSG 63 (199)
T ss_dssp CCCCEEEEEETTEEEEEEESCGGGC-------------CSSEEEEEECTTSCCCST
T ss_pred CCCCceEEEECCEEEEEEecccccC-------------cCCEEEECCCCCCCCCch
Confidence 4455799999999999999999864 355666666666665554
No 81
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=23.27 E-value=72 Score=23.94 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=22.2
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceecc
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIISG 328 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~IsG 328 (457)
.|..+.+.......+ .-.|.|||..+.++-..+|..
T Consensus 15 ~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~~ 50 (108)
T 1qfw_M 15 VGERVTLSCKASETV---DSFVSWYQQKPEQSPKLLIFG 50 (108)
T ss_dssp TTCCEEEEEEESSCC---CSCEEEEEECTTSCCEEEECS
T ss_pred CCCCEEEEeeeCCCC---CcEEEEEEECCCCCCEEEEEE
Confidence 466666665544444 357999999875444445543
No 82
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=23.09 E-value=57 Score=24.77 Aligned_cols=37 Identities=14% Similarity=0.252 Sum_probs=21.2
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|...-.. ...+.-.|.|||..+..+-.-+|
T Consensus 13 ~~G~~vtL~C~~~~-~~~~~~~v~Wyrq~~~~~~~~l~ 49 (117)
T 2yc1_A 13 QPGGSLRLSCTGSG-FTFDNYAMHWLRQVPGEGLEWVS 49 (117)
T ss_dssp CTTCCEEEEEEEES-SCGGGSCEEEEEECTTSCEEEEE
T ss_pred cCCCeEEEEEEecC-cccCCCeEEEEEECCCCCcEEEE
Confidence 35666666544332 12346789999998743333343
No 83
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=22.76 E-value=63 Score=24.74 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=20.8
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|..+.|...-.. .+.+.-.|.|||..+..+-.-+|
T Consensus 14 ~G~~vtL~C~~~~-~~~~~~~v~W~rq~~~~~~~~l~ 49 (120)
T 3b9v_A 14 PGGSLRLSCAASG-FNIKDTYIGWVRRAPGKGEEWVA 49 (120)
T ss_dssp TTCCEEEEEEEES-SCGGGSEEEEEEECTTCCEEEEE
T ss_pred CCccEEEEEEeeC-ccccccEEEEEEECCCCCcEEEE
Confidence 4666666544332 12346789999998743333343
No 84
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=22.49 E-value=7.2e+02 Score=26.44 Aligned_cols=92 Identities=16% Similarity=0.339 Sum_probs=57.7
Q ss_pred hHHHHHHHHHHHHhhcccCCCChhHHHHH--HHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHH----hhHHHHHHHHH
Q 012725 107 HVLLKKLRDALEALRGRMAGRTKEDVEKA--ISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQ----ASEDAKKLVNQ 180 (457)
Q Consensus 107 ~vLLKkLRd~LesLrGRvaGrnKddVeea--ismVEaLavqltqrE~ELiQeK~EVkKlA~~lKq----ASeDAkkiV~e 180 (457)
..+++|+-.-|+.++--+.|..+.|.+|- |.++|.- |.-=..=.-.|...+++|+.-|.. =|.|=++||++
T Consensus 117 ~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekA---l~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~ 193 (526)
T 3iyk_A 117 DKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKA---VTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKE 193 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHH
Confidence 35677888888888888888888877553 4444321 111111122344567788887765 46788899999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHH
Q 012725 181 EKSFACAEIESARAVVQRFGEALEE 205 (457)
Q Consensus 181 ERa~A~aEIE~ARAaV~Rve~aleE 205 (457)
=|.+ |++-+.||..=.++++|
T Consensus 194 yr~k----~~aL~~aIe~Er~~~~E 214 (526)
T 3iyk_A 194 YRDK----IDALKNAIEVERDGMQE 214 (526)
T ss_pred HHHH----HHHHHHHHHHHHhHHHH
Confidence 8876 55556666655455544
No 85
>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}
Probab=22.19 E-value=74 Score=25.15 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=23.5
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS 327 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 327 (457)
..|..+.|........+.+.-.|.|||..+..+-.-||.
T Consensus 13 ~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~ 51 (126)
T 2h32_A 13 ALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLR 51 (126)
T ss_dssp ETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEE
T ss_pred CCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEE
Confidence 356777776554433234566899999987544444443
No 86
>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A
Probab=21.86 E-value=2.5e+02 Score=21.44 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=18.2
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCC
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDG 320 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~g 320 (457)
.|..+.|........ +.-.+.|||..+..
T Consensus 14 ~G~~vtL~C~~~~~~--~~~~v~Wyrq~~g~ 42 (114)
T 2hp4_A 14 LGETVELKCQVLLSN--PTSGASWLFQPRGA 42 (114)
T ss_dssp TTCCEEEEEEECCSS--CCSCEEEEEEESSS
T ss_pred CCCCEEEEEEeecCC--CCceEEEEEECCCC
Confidence 466666655544222 34579999998744
No 87
>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin fold, protein-protein hetero C alpha-beta orthogonal bundle, immune system-hydrolase compl; 1.40A {Camelus dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A 2x6m_A 1zmy_A 1f2x_K
Probab=21.82 E-value=1.2e+02 Score=24.58 Aligned_cols=37 Identities=16% Similarity=0.363 Sum_probs=22.4
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|...... ...+.-.|.|||..+...-.-||
T Consensus 13 ~~G~~vtL~C~~s~-~~~~~~~v~Wyrq~~g~~~~~l~ 49 (137)
T 1rjc_A 13 QAGQSLRLSCATSG-ATSSSNCMGWFRQAPGKEREGVA 49 (137)
T ss_dssp CTTCCEEEEEECC--CTTTCSEEEEEEECTTSCCEEEE
T ss_pred ecCCCEEEEEEecC-CcCCCcEEEEEEECCCCCCEEEE
Confidence 35777777655432 23356789999998744444444
No 88
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=21.75 E-value=85 Score=25.09 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=19.0
Q ss_pred ccceeeEeeCCCCCCC--CCCceeeEEE
Q 012725 290 LGSHLRIRPRSDTAPS--LSKCSIQWYR 315 (457)
Q Consensus 290 LGS~L~i~~~~d~~~d--lSkcsiQWyR 315 (457)
.|+.+.+....++.|. .+.-.|+|||
T Consensus 16 ~G~~v~L~C~~~~~p~~~~~~~~v~W~k 43 (202)
T 3bp6_B 16 VGSSVSLECDFDRRECTELEGIRASLQK 43 (202)
T ss_dssp TTSCEEEEEEECTTC---CTTEEEEEEE
T ss_pred CCCcEEEEEEecCCCCCCccceEEEEEc
Confidence 5777777766666664 6667899999
No 89
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer, betaine aldehyde dehydrogenase, NAD, oxidoreductase; HET: NAD; 2.15A {Pisum sativum} SCOP: c.82.1.0 PDB: 3iwk_A* 4a0m_A*
Probab=21.63 E-value=3.6e+02 Score=26.99 Aligned_cols=68 Identities=13% Similarity=0.189 Sum_probs=49.6
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 012725 97 KLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKK 176 (457)
Q Consensus 97 K~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk 176 (457)
.|+....-+|..+|++|.++|+. |+|++-++++. ..-+-..| -..||...+.+|....+-+++
T Consensus 65 ~w~~~~~~~R~~~L~~~a~~l~~--------~~~ela~~~~~------e~Gk~~~e---a~~ev~~~~~~~~~~a~~~~~ 127 (503)
T 3iwj_A 65 DWATASGAVRARYLRAIAAKVTE--------KKPELAKLESI------DCGKPLDE---AAWDIDDVAGCFEYYADLAEK 127 (503)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHH--------THHHHHHHHHH------HHCCCHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH------HhCCCHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 58888888999999999999975 56777666543 11111112 235899999999999998888
Q ss_pred HHHHh
Q 012725 177 LVNQE 181 (457)
Q Consensus 177 iV~eE 181 (457)
+..+.
T Consensus 128 ~~~~~ 132 (503)
T 3iwj_A 128 LDARQ 132 (503)
T ss_dssp HHHHT
T ss_pred hcCCc
Confidence 76654
No 90
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.58 E-value=3.5e+02 Score=22.52 Aligned_cols=39 Identities=21% Similarity=0.314 Sum_probs=3.8
Q ss_pred CCCChhHHHHHH-HHHHHHhhhhhcchhhhhhHHHHHHHH
Q 012725 125 AGRTKEDVEKAI-SLVEALAVKLTQNEGELIQEKFEVKKL 163 (457)
Q Consensus 125 aGrnKddVeeai-smVEaLavqltqrE~ELiQeK~EVkKl 163 (457)
|-||+.|+|.-. +=++-|-.+-++.-.+|-.-|.|+..+
T Consensus 2 a~knr~eaE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~el 41 (129)
T 3tnu_B 2 ANRSRTEAESWYQTKYEELQQTAGRHGDDLRNTKHEISEM 41 (129)
T ss_dssp --------------------------------CHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456666665543 223444444444444454445554444
No 91
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=21.13 E-value=95 Score=30.91 Aligned_cols=93 Identities=22% Similarity=0.306 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhcccCCCChh--H-HHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHH---HhhHHHHHHHHHhhh
Q 012725 110 LKKLRDALEALRGRMAGRTKE--D-VEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLK---QASEDAKKLVNQEKS 183 (457)
Q Consensus 110 LKkLRd~LesLrGRvaGrnKd--d-VeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lK---qASeDAkkiV~eERa 183 (457)
+|-+|+-.+.++-.+.-|+.+ | |++-+++ .-++-+-..++-+-+++-.+++.-+. ...+|+..+..+-+.
T Consensus 4 ~~~~r~~~~~~~~~~~~r~~~~~~~~~~~~~~----~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~ 79 (425)
T 2dq3_A 4 INLIREKPDYVKERLATRDKELVSLVDKVLEL----DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKE 79 (425)
T ss_dssp HHHHHHCHHHHHHHHTTTCGGGHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHH
T ss_pred HHHHHhCHHHHHHHHHHhCCCchhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHH
Confidence 455566666666666666655 2 4444443 22332222333333344444444333 334565555544333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 012725 184 FACAEIESARAVVQRFGEALEEEE 207 (457)
Q Consensus 184 ~A~aEIE~ARAaV~Rve~aleEqe 207 (457)
...+|....+....+++.|++.-
T Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 80 -LKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777777776643
No 92
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.99 E-value=3.7e+02 Score=24.42 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=22.4
Q ss_pred chhhhhhHHHHHHHHHHHHHHhhHHHHHHH--HHhhhhhHHHHHHHHHHHHH
Q 012725 149 NEGELIQEKFEVKKLANFLKQASEDAKKLV--NQEKSFACAEIESARAVVQR 198 (457)
Q Consensus 149 rE~ELiQeK~EVkKlA~~lKqASeDAkkiV--~eERa~A~aEIE~ARAaV~R 198 (457)
-+.+|.+-++++...-.-+++|..+..+.- .+..+.++.+++.|++.+..
T Consensus 74 ~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~ 125 (341)
T 3fpp_A 74 VEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAV 125 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 344444444544444444444444433221 22344455555555555443
No 93
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=20.99 E-value=48 Score=26.86 Aligned_cols=11 Identities=27% Similarity=1.029 Sum_probs=5.7
Q ss_pred CceeeEEEeee
Q 012725 308 KCSIQWYRVSL 318 (457)
Q Consensus 308 kcsiQWyRv~~ 318 (457)
.|+..||++..
T Consensus 70 ~c~~~~~~~~~ 80 (87)
T 2k02_A 70 ACRQEWWALRL 80 (87)
T ss_dssp SSEEEEEECC-
T ss_pred cccccceeeee
Confidence 46666665543
No 94
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=20.97 E-value=1.5e+02 Score=24.93 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=18.3
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
.|+.+.+.....+.| .-.|.|||..+++...-++
T Consensus 16 ~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~~~ 49 (259)
T 3omz_A 16 TGSSAEITCDLAEGS---TGYIHWYLHQEGKAPQRLL 49 (259)
T ss_dssp TTCCEEEECCC--------CEEEEEEECTTSCCEEEE
T ss_pred CCCcEEEEEEEccCC---CcEEEEEEECCCCCcEEEE
Confidence 466666655545444 4579999976654443333
No 95
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=20.92 E-value=3.3e+02 Score=22.68 Aligned_cols=91 Identities=18% Similarity=0.251 Sum_probs=63.6
Q ss_pred chhhHHHHHHHHHHHHhhcccCCC---ChhHHHHHHHHHHHHhhhhhc-----ch------------hhhhhHHHHHHHH
Q 012725 104 LEGHVLLKKLRDALEALRGRMAGR---TKEDVEKAISLVEALAVKLTQ-----NE------------GELIQEKFEVKKL 163 (457)
Q Consensus 104 Ler~vLLKkLRd~LesLrGRvaGr---nKddVeeaismVEaLavqltq-----rE------------~ELiQeK~EVkKl 163 (457)
=+|+.++|.++..+..|.+=+-|. +.+.|..+..-+.+++-.+.. -+ -+.-++..+.+++
T Consensus 6 ~~Rq~~m~~m~~~~~~l~~m~kg~~~~d~~~~~~~a~~l~~~a~~~~~~F~~gs~~~~~~~g~s~A~p~IW~~~~~F~~~ 85 (129)
T 1s05_A 6 DKTQKLMKDNGRNMMVLGAIAKGEKPYDQAAVDAALKQFDETAKDLPKLFPDSVKGLKPFDSKYSSSPKIWAERAKFDTE 85 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCSHHHHHHHHHHHHGGGSTTTSCCTTSSSSSSCCSSCCCCTHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhhchHhhCCCCcccccccCCCccccHHHHhCHHHHHHH
Confidence 368999999999999999999898 666788888888888766622 01 1234677889999
Q ss_pred HHHHHHhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 012725 164 ANFLKQASEDAKKLVNQEKSFACAEIESARAVVQRFGEA 202 (457)
Q Consensus 164 A~~lKqASeDAkkiV~eERa~A~aEIE~ARAaV~Rve~a 202 (457)
+.-|..|.+...... . ..+..++++..|++.
T Consensus 86 ~~~~~~aa~~l~~aa-~-------d~~~~~~a~~~v~~~ 116 (129)
T 1s05_A 86 IADFAKAVDGAKGKI-K-------DVDTLKAAMQPIGKA 116 (129)
T ss_dssp HHHHHHHHHHHHHHC-C-------SHHHHHHHTTTTTHH
T ss_pred HHHHHHHHHHHHHHh-c-------CHHHHHHHHHHHHhH
Confidence 888888777654433 1 244455555555443
No 96
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=20.89 E-value=98 Score=23.42 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=17.7
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCC
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDG 320 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~g 320 (457)
..|..+.|...-... ..+.-.+.|||..+.+
T Consensus 13 ~~G~~vtL~C~~~~~-~~~~~~v~W~rq~~~~ 43 (114)
T 1sjv_A 13 QAGESLKLSCAASGN-TFSGGFMGWYRQAPGK 43 (114)
T ss_dssp CTTCCEEEEECCCC------CCEEEEEECTTS
T ss_pred cCCCCEEEEEEEcCc-cccCCeEEEEEECCCC
Confidence 356777765554422 2245689999998743
No 97
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB: 1bpw_A*
Probab=20.63 E-value=1.8e+02 Score=29.19 Aligned_cols=65 Identities=12% Similarity=0.169 Sum_probs=48.7
Q ss_pred hhhhhhhchhhHHHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHH
Q 012725 97 KLRDVASLEGHVLLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKK 176 (457)
Q Consensus 97 K~reva~Ler~vLLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkk 176 (457)
.|+....-||.-+|+++.+.|+. |+|++-++++.- .+ .+-.| -+.||...+.+|..+.+-+++
T Consensus 73 ~w~~~~~~~R~~~L~~~a~~l~~--------~~~ela~~~~~e--~G--k~~~e-----a~~ev~~~~~~~~~~a~~~~~ 135 (503)
T 1a4s_A 73 KWSKMAGIERSRVMLEAARIIRE--------RRDNIAKLEVIN--NG--KTITE-----AEYDIDAAWQCIEYYAGLAPT 135 (503)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHH--------THHHHHHHHHHH--HC--CCHHH-----HHHHHHHHHHHHHHHHHHGGG
T ss_pred hcccCCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH--hC--CCHHH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 58888889999999999999984 778877766542 11 11112 257899999999998888877
Q ss_pred HH
Q 012725 177 LV 178 (457)
Q Consensus 177 iV 178 (457)
+.
T Consensus 136 ~~ 137 (503)
T 1a4s_A 136 LS 137 (503)
T ss_dssp CC
T ss_pred hc
Confidence 64
No 98
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=20.62 E-value=86 Score=26.11 Aligned_cols=47 Identities=23% Similarity=0.273 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhhhhhcchhhhhhHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhH
Q 012725 109 LLKKLRDALEALRGRMAGRTKEDVEKAISLVEALAVKLTQNEGELIQEKFEVKKLANFLKQASEDAKKLVNQEKSFAC 186 (457)
Q Consensus 109 LLKkLRd~LesLrGRvaGrnKddVeeaismVEaLavqltqrE~ELiQeK~EVkKlA~~lKqASeDAkkiV~eERa~A~ 186 (457)
=-||+|-+...+||. .|++|+...+. +=|.|++.-.++++...+||.
T Consensus 13 S~kK~r~va~~IrG~-------~v~~Al~~L~f------------------------~pkkaa~~v~k~L~sA~aNAe 59 (110)
T 3r8s_S 13 SAQKVRLVADLIRGK-------KVSQALDILTY------------------------TNKKAAVLVKKVLESAIANAE 59 (110)
T ss_dssp CHHHHHHHHHHHTTC-------BHHHHHHHHHH------------------------CCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCC-------cHHHHHHHHhh------------------------CCHHHHHHHHHHHHHHHHhHH
Confidence 358999999999986 57889888762 345566666778877777774
No 99
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=20.43 E-value=87 Score=23.43 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=21.6
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCccceec
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEIIS 327 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~Is 327 (457)
..|..+.+.......+ .-.|.|||..+.++-.-+|.
T Consensus 14 ~~G~~v~L~C~~~~~~---~~~v~W~r~~~~~~~~~l~~ 49 (107)
T 1i8k_A 14 ATGEKVTIRCMTSTDI---DDDMNWYQQKPGEPPKFLIS 49 (107)
T ss_dssp CTTCCEEEEEEESSCC---TTCEEEEEECTTSCCEEEEE
T ss_pred cCCCCEEEEEEECCCC---CCcEEEEEECCCCCCEEEEE
Confidence 3566776665544444 45799999886433333443
No 100
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}
Probab=20.36 E-value=1.3e+02 Score=23.38 Aligned_cols=21 Identities=14% Similarity=0.466 Sum_probs=17.2
Q ss_pred ccceeeEeeCCCCCCCCCCceeeEEE
Q 012725 290 LGSHLRIRPRSDTAPSLSKCSIQWYR 315 (457)
Q Consensus 290 LGS~L~i~~~~d~~~dlSkcsiQWyR 315 (457)
-|+.+.+....++.|. |.|||
T Consensus 13 ~G~~v~L~C~~~g~P~-----i~W~k 33 (82)
T 3r08_E 13 SGTSVELTCPLDSDEN-----LKWEK 33 (82)
T ss_dssp ETTEEEEECSSCCCSS-----CEEEE
T ss_pred cCCeEEEEEECCCCCc-----EEEEE
Confidence 4788888888888873 99999
No 101
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=20.20 E-value=83 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=21.4
Q ss_pred cccceeeEeeCCCCCCCCCCceeeEEEeeeCCCcccee
Q 012725 289 ALGSHLRIRPRSDTAPSLSKCSIQWYRVSLDGSQKEII 326 (457)
Q Consensus 289 ~LGS~L~i~~~~d~~~dlSkcsiQWyRv~~~gsk~E~I 326 (457)
..|..+.|....... ..+.-.+.|||..+.++-.-+|
T Consensus 13 ~~G~~vtL~C~~~~~-~~~~~~v~Wyrq~~~~~~~~l~ 49 (116)
T 1a2y_B 13 APSQSLSITCTVSGF-SLTGYGVNWVRQPPGKGLEWLG 49 (116)
T ss_dssp CTTSCEEEEEEEESS-CTTSSEEEEEEECTTSCCEEEE
T ss_pred eCCCcEEEEEEEcCC-CcCCcEEEEEEeCCCCCcEEEE
Confidence 346666665443322 2356789999998743333343
Done!