BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012726
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PUJ|A Chain A, Structure Of B. Subtilis Ylqf Gtpase
Length = 282
Score = 81.6 bits (200), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP 273
D+V +++DAR P +R +E LK +K I+LLNK D A T+ W + +
Sbjct: 25 DIVYELVDARIPMSSRNPMIEDILK----NKPRIMLLNKADKADAAVTQQW----KEHFE 76
Query: 274 SLAFHA-SINKSFGKG--SLLSVLRQFARLKSDK--------QAISVGFVGYPNVGKSSV 322
+ + SIN G+G ++ ++ + K D+ +AI +G PNVGKS++
Sbjct: 77 NQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTL 136
Query: 323 INTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDSE---TDIVLKGVVR 379
IN L KN+ K PG T Q++ + K + L+D PG+++ + E + + G ++
Sbjct: 137 INRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIK 196
Query: 380 --VTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRVCLFLHF 437
+ NL+D A L+ E LK Y + D + E+ + +L + G+ R CL
Sbjct: 197 DSIINLQDVAVFGLRFLEEHYPERLKERYGL-DEIPED--IAELFDAIGE-KRGCL---- 248
Query: 438 ISWYLFFYDHITNL 451
+S L YD T +
Sbjct: 249 MSGGLINYDKTTEV 262
>pdb|3CNL|A Chain A, Crystal Structure Of Gnp-Bound Ylqf From T. Maritima
pdb|3CNN|A Chain A, Gtp-Bound Structure Of Tm Ylqf
pdb|3CNO|A Chain A, Gdp-Bound Structue Of Tm Ylqf
Length = 262
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 95/191 (49%), Gaps = 22/191 (11%)
Query: 198 QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVP 257
++KR +L +++++ VV+V DAR P T + ++ K I+LLNK D+
Sbjct: 10 KAKRQIKDLLRLVNT---VVEVRDARAPFATSAYGVD------FSRKETIILLNKVDIAD 60
Query: 258 AWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNV 317
TK W+ K+ + + KG VL +L D+ A V VG PN
Sbjct: 61 EKTTKKWVEFFKKQGKRVI-------TTHKGEPRKVL--LKKLSFDRLA-RVLIVGVPNT 110
Query: 318 GKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN---KDSETDIVL 374
GKS++IN L+ K V PG TK Q+ +L + ++D PG++Y+N +D ++L
Sbjct: 111 GKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGILYKNIFSEDLAAKLLL 170
Query: 375 KGVVRVTNLED 385
G + V +ED
Sbjct: 171 VGSLPVERIED 181
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVY 363
V FVG NVGKSS++N L + + V+ PG+T+ + + + + +D PG Y
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGY 80
>pdb|3H2Y|A Chain A, Crystal Structure Of Yqeh Gtpase From Bacillus Anthracis
With Dgdp Bound
Length = 368
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 23/164 (14%)
Query: 212 SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRV 267
S +VV+++D D G+ L R + + ++L+ NK DL+P K W R
Sbjct: 69 SDALVVKIVDIFDFNGSWLPGLHRFVG----NNKVLLVGNKADLIPKSVKHDKVKHWXRY 124
Query: 268 LSKEY---PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVIN 324
+K+ P F S K G L + + + V VG NVGKS+ IN
Sbjct: 125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYY------RGGKDVYVVGCTNVGKSTFIN 178
Query: 325 ------TLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVV 362
+ T+NV + PG T I L + L D PG++
Sbjct: 179 RXIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGII 222
>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A
Switch Protein Containing Two Gtpase Domains
Length = 439
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
AI V VG PNVGKS++ N + K V+PIPG T+
Sbjct: 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTR 216
>pdb|1PUI|A Chain A, Structure Of Engb Gtpase
pdb|1PUI|B Chain B, Structure Of Engb Gtpase
Length = 210
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 300 LKSDKQAISVGFVGYPNVGKSSVINTLRT-KNVCKVAPIPGETKVWQYITLTKRIFLIDC 358
L SD I V F G N GKSS +NTL K++ + + PG T++ + L+D
Sbjct: 21 LPSDT-GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79
Query: 359 PGVVY 363
PG Y
Sbjct: 80 PGYGY 84
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 20/172 (11%)
Query: 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS 269
+D +DV++ +++ R +G E + K ++L +NK D +R
Sbjct: 100 MDEADVIIFMVNGR--EGVTAADEEVAKILYRTKKPVVLAVNKLD-------NTEMRANI 150
Query: 270 KEYPSLAFH----ASINKSFGKGSLLSVL----RQFARLKSDKQAISVGFVGYPNVGKSS 321
++ SL F S G G LL + + K +++ I +G PNVGKSS
Sbjct: 151 YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSS 210
Query: 322 VINTLRTKNVCKVAPIPGETK--VWQYITLTKRIFLI-DCPGVVYQNKDSET 370
++N + + V+ + G T+ V T ++ F+I D G+ + K ET
Sbjct: 211 LVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYET 262
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT---LTKRIFLIDCPGV---- 361
V VG PNVGKS++ N + + + V PG T+ Y + L LID G+
Sbjct: 26 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 85
Query: 362 ------VYQNKD---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK 399
+ Q + E D+++ V + A E + ++L R KK
Sbjct: 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKK 132
>pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From
Thermus Thermophilus Hb8
Length = 416
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 299 RLKSDKQAIS-VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY----ITLTKRI 353
RL+ + I+ VG VGYPN GKSS++ + T+ K+AP P T ++ +R
Sbjct: 149 RLRLELMLIADVGLVGYPNAGKSSLLAAM-TRAHPKIAPYPFTTLSPNLGVVEVSEEERF 207
Query: 354 FLIDCPGVV 362
L D PG++
Sbjct: 208 TLADIPGII 216
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 309 VGFVGYPNVGKSSVINTL-RTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPG 360
+ G NVGKSS IN+L KN+ + + PG+T+ + + + +D PG
Sbjct: 26 IALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPG 78
>pdb|1WF3|A Chain A, Crystal Structure Of Gtp-Binding Protein Tt1341 From
Thermus Thermophilus Hb8
Length = 301
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT---KRIFLIDCPGV 361
V VG PNVGKS+++N L V ++P P T+ LT ++I +D PG+
Sbjct: 10 VAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 65
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV--PAWATK 262
E+Y+ + + VV V+D R P + R LK ++L+ NK D P A K
Sbjct: 79 EVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMK 138
Query: 263 GWLRVLSKEYPSLAFHASINKSFGKGSLLSVL--RQFARLKSDKQAI 307
+ +L + P +LS L RQ A LK+D A+
Sbjct: 139 AYHELLPEAEP---------------RMLSALDERQVAELKADLLAL 170
>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3'
End Of 16s Rrna
Length = 308
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV----WQYITLTKRIFLIDCPGVVYQ 364
V VG PNVGKS+++N L V ++P G T++ + I +I +D PG +Y+
Sbjct: 13 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG-IYE 71
Query: 365 NKDSET 370
K S+
Sbjct: 72 PKKSDV 77
>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And
Nucleotides 1506- 1542 Of 16s Ribosomal Rna
pdb|3R9X|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp,
Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga
Length = 307
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV----WQYITLTKRIFLIDCPGVVYQ 364
V VG PNVGKS+++N L V ++P G T++ + I +I +D PG +Y+
Sbjct: 12 VAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPG-IYE 70
Query: 365 NKDSET 370
K S+
Sbjct: 71 PKKSDV 76
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPGETK--VWQYITLTKRIF-LIDCPGVVYQNKD 367
VG PNVGKS+++N L ++ V IPG T+ + + I + +F ++D GV + D
Sbjct: 248 IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND 307
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256
I+ +D+V+ VLDA P +R + E K+K ++++NK D+V
Sbjct: 321 IEKADIVLFVLDASSP----LDEEDRKILERIKNKRYLVVINKVDVV 363
>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
pdb|2DYK|B Chain B, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga
From Thermus Thermophilus Hb8
Length = 161
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN 365
V VG PNVGKSS+ N L K VA +PG T+ + + R L+D G+ +
Sbjct: 4 VVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGD 63
Query: 366 K------------DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410
K + ++VL V L A + E L+R K + A K+ D
Sbjct: 64 KWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDD 120
>pdb|2HJG|A Chain A, The Crystal Structure Of The B. Subtilis Yphc Gtpase In
Complex With Gdp
Length = 436
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLS- 269
D +DV++ ++ R +G E + K ++L +NK D A L
Sbjct: 81 DEADVIIFXVNGR--EGVTAADEEVAKILYRTKKPVVLAVNKLDNTEXRANIYDFYSLGF 138
Query: 270 -KEYPSLAFHASINKSFGKGSLLSVL----RQFARLKSDKQAISVGFVGYPNVGKSSVIN 324
+ YP H G G LL + + K +++ I +G PNVGKSS++N
Sbjct: 139 GEPYPISGTHG-----LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVN 193
Query: 325 TLRTKNVCKVAPIPGETK--VWQYITLTKRIFLI-DCPGVVYQNKDSET 370
+ V+ + G T+ V T ++ F+I D G + K ET
Sbjct: 194 AXLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGXRKKGKVYET 242
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 16/107 (14%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT---LTKRIFLIDCPGV---- 361
V VG PNVGKS++ N + + + V PG T+ Y + L LID G+
Sbjct: 6 VAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGD 65
Query: 362 ------VYQNKD---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK 399
+ Q + E D+++ V + A E + ++L R KK
Sbjct: 66 EPFLAQIRQQAEIAXDEADVIIFXVNGREGVTAADEEVAKILYRTKK 112
>pdb|3BB3|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Gdp And Mg2+
Length = 262
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 297 FARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIF- 354
F +LK D +++V +G VGKSS +N+L + V +V+P E ++ T F
Sbjct: 26 FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT 85
Query: 355 --LIDCPGVV 362
+ID PG+V
Sbjct: 86 INIIDTPGLV 95
>pdb|3DEF|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana,
Dimerization Deficient Mutant R130a
Length = 262
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 297 FARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIF- 354
F +LK D +++V +G VGKSS +N+L + V +V+P E ++ T F
Sbjct: 26 FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT 85
Query: 355 --LIDCPGVV 362
+ID PG+V
Sbjct: 86 INIIDTPGLV 95
>pdb|3BB4|A Chain A, Crystal Structure Of Toc33 From Arabidopsis Thaliana In
Complex With Mg2+ And Gmppnp
Length = 262
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 297 FARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIF- 354
F +LK D +++V +G VGKSS +N+L + V +V+P E ++ T F
Sbjct: 26 FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT 85
Query: 355 --LIDCPGVV 362
+ID PG+V
Sbjct: 86 INIIDTPGLV 95
>pdb|2J3E|A Chain A, Dimerization Is Important For The Gtpase Activity Of
Chloroplast Translocon Components Attoc33 And Pstoc159
Length = 249
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 297 FARLKS-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIF- 354
F +LK D +++V +G VGKSS +N+L + V +V+P E ++ T F
Sbjct: 25 FGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFT 84
Query: 355 --LIDCPGVV 362
+ID PG+V
Sbjct: 85 INIIDTPGLV 94
>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
pdb|4A9A|B Chain B, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain
Length = 376
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 18/70 (25%)
Query: 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT----------KRIFLID 357
SVGFVG+P+VGKS++++ K+ E +++ TL +I ++D
Sbjct: 74 SVGFVGFPSVGKSTLLS--------KLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLD 125
Query: 358 CPGVVYQNKD 367
PG++ KD
Sbjct: 126 LPGIIDGAKD 135
>pdb|1T9H|A Chain A, The Crystal Structure Of Yloq, A Circularly Permuted
Gtpase
Length = 307
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 247 ILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQA 306
I+ + K DL+ T+ ++ +++Y ++ + + S + SL ++ F DK
Sbjct: 121 IICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF----QDKTT 176
Query: 307 ISVGFVGYPNVGKSSVINTL 326
+ F G VGKSS++N +
Sbjct: 177 V---FAGQSGVGKSSLLNAI 193
>pdb|3HYT|A Chain A, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|B Chain B, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
pdb|3HYT|C Chain C, Structural Basis Of Gdp Release And Gating In G Protein
Coupled Fe2+ Transport
Length = 270
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 307 ISVGFVGYPNVGKSSVINTLRT--KNVCKVAPIPGETKVWQYITLTKRIFLIDCPG 360
+++G +G PN GK+++ N L + V A + E K Q+ T ++ L+D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|3GEE|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gdp And Folinic Acid
pdb|3GEI|A Chain A, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|B Chain B, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
pdb|3GEI|C Chain C, Crystal Structure Of Mnme From Chlorobium Tepidum In
Complex With Gcp
Length = 476
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 296 QFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW 344
Q R+ S + +S G PN GKS+++NTL + V+ +PG T+ +
Sbjct: 225 QHGRIVS--EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDY 271
>pdb|3HYR|A Chain A, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|B Chain B, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
pdb|3HYR|C Chain C, Structural Insight Into G Protein Coupling And Regulation
Of Fe2+ Membrane Transport
Length = 270
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 307 ISVGFVGYPNVGKSSVINTLRT--KNVCKVAPIPGETKVWQYITLTKRIFLIDCPG 360
+++G +G PN GK+++ N L + V A + E K Q+ T ++ L+D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|2WJG|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJG|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 188
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 302 SDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG---ETKVWQYITLTKRIFLIDC 358
S ++ + +G PNVGKS++ N L +NV + PG E K ++ ++ ++D
Sbjct: 3 SHMKSYEIALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDL 61
Query: 359 PGVVYQNKDSETDIVLKGVV------RVTNLEDA 386
PGV +S +I+ + + V N+ DA
Sbjct: 62 PGVYSLTANSIDEIIARDYIINEKPDLVVNIVDA 95
>pdb|3I8S|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8S|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Nucleotide-Free Form
pdb|3I8X|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I8X|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gdp-Bound Form
pdb|3I92|A Chain A, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|B Chain B, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
pdb|3I92|C Chain C, Structure Of The Cytosolic Domain Of E. Coli Feob,
Gppch2p- Bound Form
Length = 274
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 307 ISVGFVGYPNVGKSSVINTLRT--KNVCKVAPIPGETKVWQYITLTKRIFLIDCPG 360
+++G +G PN GK+++ N L + V A + E K Q+ T ++ L+D PG
Sbjct: 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPG 59
>pdb|2WJJ|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJJ|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 168
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPG---ETKVWQYITLTKRIFLIDCPGVVYQN 365
+ +G PNVGKS++ N L +NV + PG E K ++ ++ ++D PGV
Sbjct: 7 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 65
Query: 366 KDSETDIV 373
+S +I+
Sbjct: 66 ANSIDEII 73
>pdb|3GEH|A Chain A, Crystal Structure Of Mnme From Nostoc In Complex With Gdp,
Folinic Acid And Zn
Length = 462
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
+ + V VG PNVGKSS++N + V +PG T+
Sbjct: 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTR 260
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 10/63 (15%)
Query: 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK 270
+++D+V+ +DA T ++ + E KH+ +IL++NK DLV + S
Sbjct: 302 NTADLVLLTIDA----ATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQ------LITSL 351
Query: 271 EYP 273
EYP
Sbjct: 352 EYP 354
>pdb|2WJH|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJH|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 166
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPG---ETKVWQYITLTKRIFLIDCPGVVYQN 365
+ +G PNVGKS++ N L +NV + PG E K ++ ++ ++D PGV
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 366 KDSETDIVLKGVV------RVTNLEDA 386
+S +I+ + + V N+ DA
Sbjct: 65 ANSIDEIIARDYIINEKPDLVVNIVDA 91
>pdb|2WJI|A Chain A, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
pdb|2WJI|B Chain B, Structure And Function Of The Feob G-Domain From
Methanococcus Jannaschii
Length = 165
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPG---ETKVWQYITLTKRIFLIDCPGVVYQN 365
+ +G PNVGKS++ N L +NV + PG E K ++ ++ ++D PGV
Sbjct: 6 IALIGNPNVGKSTIFNALTGENVY-IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 366 KDSETDIV 373
+S +I+
Sbjct: 65 ANSIDEII 72
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gdp Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular Domain
Of Feob From Klebsiella Pneumoniae In Gmppnp Binding
State
Length = 267
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 305 QAISVGFVGYPNVGKSSVINTLRT--KNVCKVAPIPGETKVWQYITLTKRIFLIDCPG 360
Q ++VG +G PN GK+++ N L + V A + E K + T ++ L+D PG
Sbjct: 2 QKLTVGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGIFATTDHQVTLVDLPG 59
>pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein
pdb|2DWQ|B Chain B, Thermus Thermophilus Ychf Gtp-Binding Protein
Length = 368
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVC 332
++VG VG PNVGKS++ N L N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANAL 27
>pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In
Complexed With Gdp
Length = 368
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVC 332
++VG VG PNVGKS++ N L N
Sbjct: 2 LAVGIVGLPNVGKSTLFNALTRANAL 27
>pdb|3A1T|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form Ii
pdb|3A1U|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1U|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gmppnp Form
pdb|3A1V|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
pdb|3A1V|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Apo Form
Length = 258
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET-----KVWQYITLTKRIFLIDCPGV 361
+ V G PNVGK+S+ N L T VA PG T V+ Y T I LID PG
Sbjct: 6 VKVALAGCPNVGKTSLFNAL-TGTKQYVANWPGVTVEKKEGVFTYKGYT--INLIDLPGT 62
Query: 362 V---YQNKDSET--DIVLKG 376
Y + D + D +LKG
Sbjct: 63 YSLGYSSIDEKIARDYLLKG 82
>pdb|3A1S|A Chain A, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
pdb|3A1S|B Chain B, Crystal Structue Of The Cytosolic Domain Of T. Maritima
Feob Iron Iransporter In Gdp Form I
Length = 258
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET-----KVWQYITLTKRIFLIDCPGV 361
+ V G PNVGK+S+ N L T VA PG T V+ Y T I LID PG
Sbjct: 6 VKVALAGCPNVGKTSLFNAL-TGTKQYVANWPGVTVEKKEGVFTYKGYT--INLIDLPGT 62
Query: 362 V---YQNKDSET--DIVLKG 376
Y + D + D +LKG
Sbjct: 63 YSLGYSSIDEKIARDYLLKG 82
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
++ + V G PN GKSS++N L + V I G T+
Sbjct: 5 REGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 43
>pdb|2E87|A Chain A, Crystal Structure Of Hypothetical Gtp-Binding Protein
Ph1320 From Pyrococcus Horikoshii Ot3, In Complex With
Gdp
Length = 357
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK---VWQYITLTKRIFLIDCP 359
D + +V G+PNVGKS+++ L T ++A P T+ V Q+ R +ID P
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQIIDTP 222
Query: 360 GVVYQNKDSETDIVLKGVVR-------VTNLEDAAEHIG 391
G++ + +I + ++ + + D +EH G
Sbjct: 223 GLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCG 261
>pdb|3BB1|A Chain A, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|B Chain B, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|C Chain C, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|D Chain D, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|E Chain E, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|F Chain F, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|G Chain G, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
pdb|3BB1|H Chain H, Crystal Structure Of Toc34 From Pisum Sativum In Complex
With Mg2+ And Gmppnp
Length = 274
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 284 SFGKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
+F + +L LK D ++++ +G VGKSS +N++ + V ++P E
Sbjct: 16 TFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGP 75
Query: 343 VWQYITLTKRIF---LIDCPGVV 362
++ ++ F +ID PG++
Sbjct: 76 RPVMVSRSRAGFTLNIIDTPGLI 98
>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
pdb|4DHE|B Chain B, Crystal Structure Of A Probable Gtp-Binding Protein Engb
From Burkholderia Thailandensis
Length = 223
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
Query: 309 VGFVGYPNVGKSSVINTL-RTKNVCKVAPIPGETKVWQYITLTKR----IFLIDCPGVVY 363
+ F G N GKS+ IN L K + + PG T+ Y ++ L+D PG Y
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGY 91
>pdb|3A1W|A Chain A, Crystal Structue Of The G Domain Of T. Maritima Feob Iron
Iransporter
Length = 168
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET-----KVWQYITLTKRIFLIDCPGV 361
+ V G PNVGK+S+ N L T VA PG T V+ Y T I LID PG
Sbjct: 6 VKVALAGCPNVGKTSLFNAL-TGTKQYVANWPGVTVEKKEGVFTYKGYT--INLIDLPGT 62
Query: 362 V---YQNKDSET--DIVLKG 376
Y + D + D +LKG
Sbjct: 63 YSLGYSSIDEKIARDYLLKG 82
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 63/138 (45%), Gaps = 29/138 (21%)
Query: 181 EGDGFRDLVRHTMFEKGQSKRI------WGELYKVIDSSD---VVVQVLDARDPQGTRCH 231
EGD DL+ + R+ +G +Y D S+ + ++ + RD + ++
Sbjct: 7 EGDCESDLLEYDYEYDENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPL 66
Query: 232 HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL 291
H E L +H KHK+++ L +++ G++++ ++ P GSL
Sbjct: 67 HEEIALHKHLKHKNIVQYLG------SFSENGFIKIFMEQVPG-------------GSLS 107
Query: 292 SVLR-QFARLKSDKQAIS 308
++LR ++ LK ++Q I
Sbjct: 108 ALLRSKWGPLKDNEQTIG 125
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 55/114 (48%), Gaps = 23/114 (20%)
Query: 199 SKRIWGELYKVIDSSD---VVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255
K +G +Y D S+ + ++ + RD + ++ H E L +H KHK+++ L
Sbjct: 17 GKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG---- 72
Query: 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLR-QFARLKSDKQAIS 308
+++ G++++ ++ P GSL ++LR ++ LK ++Q I
Sbjct: 73 --SFSENGFIKIFMEQVPG-------------GSLSALLRSKWGPLKDNEQTIG 111
>pdb|1H65|A Chain A, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|B Chain B, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
pdb|1H65|C Chain C, Crystal Structure Of Pea Toc34-A Novel Gtpase Of The
Chloroplast Protein Translocon
Length = 270
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 284 SFGKGSLLSVLRQFARLK-SDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
+F + +L LK D ++++ G VGKSS +N++ + V ++P E
Sbjct: 16 TFAPATQTKLLELLGNLKQEDVNSLTILVXGKGGVGKSSTVNSIIGERVVSISPFQSEGP 75
Query: 343 VWQYITLTKRIF---LIDCPGVV 362
++ ++ F +ID PG++
Sbjct: 76 RPVXVSRSRAGFTLNIIDTPGLI 98
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
+ V G PN GKSS++N L + V I G T+
Sbjct: 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In
The Structure Of Hyda(Deltaefg)
pdb|3LX4|B Chain B, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In
The Structure Of Hyda(Deltaefg)
Length = 457
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 231 HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284
H L HL+ H + + C GW+ +L K YP L + S KS
Sbjct: 107 HRLTEHLEAHPHSDEPLPMFTSC-------CPGWIAMLEKSYPDLIPYVSSCKS 153
>pdb|3IBY|A Chain A, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|B Chain B, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|C Chain C, Structure Of Cytosolic Domain Of L. Pneumophila Feob
pdb|3IBY|D Chain D, Structure Of Cytosolic Domain Of L. Pneumophila Feob
Length = 256
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPG---ETKVWQYITLTKRIFLIDCPGV 361
+G PN GK+++ N L N +V PG E K +++ I + D PGV
Sbjct: 6 LIGNPNCGKTTLFNALTNANQ-RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGV 58
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPGETK 342
G PN GKSS++N L + V I G T+
Sbjct: 9 IAGRPNAGKSSLLNALAGREAAIVTDIAGTTR 40
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET-----KVWQYITLTKRIFLIDCPGV 361
+V VG PNVGK+++ N L T V PG T + +Y K ++D PG+
Sbjct: 5 TVALVGNPNVGKTTIFNAL-TGLRQHVGNWPGVTVEKKEGIMEY--REKEFLVVDLPGI 60
>pdb|2OHF|A Chain A, Crystal Structure Of Human Ola1 In Complex With Amppcp
Length = 396
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 306 AISVGFVGYPNVGKSSVINTL 326
++ +G VG PNVGKS+ N L
Sbjct: 22 SLKIGIVGLPNVGKSTFFNVL 42
>pdb|2Q0X|A Chain A, AlphaBETA HYDROLASE FOLD PROTEIN OF UNKNOWN FUNCTION
pdb|2Q0X|B Chain B, AlphaBETA HYDROLASE FOLD PROTEIN OF UNKNOWN FUNCTION
Length = 335
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 353 IFLIDCPGVVYQNKDSETDIVLKGV--------VRVTNLEDAAEHIGEVLKRVKKEHLKR 404
+ L+ V Y+ D E VL+GV V V+ D + + VLK + EH+
Sbjct: 227 LLLMLAHNVQYKPSDEEVGTVLEGVRDHTGCNRVTVSYFNDTCDELRRVLKAAESEHV-- 284
Query: 405 AYKIKDWVDENDF 417
A ++ DE++F
Sbjct: 285 AAILQFLADEDEF 297
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,693,852
Number of Sequences: 62578
Number of extensions: 561473
Number of successful extensions: 1560
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1512
Number of HSP's gapped (non-prelim): 64
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)