Query 012726
Match_columns 457
No_of_seqs 491 out of 3053
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 05:40:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012726.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012726hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2423 Nucleolar GTPase [Gene 100.0 1E-132 2E-137 991.2 28.7 445 5-452 5-453 (572)
2 KOG2484 GTPase [General functi 100.0 4.3E-51 9.2E-56 409.7 17.6 258 198-455 132-401 (435)
3 PF08153 NGP1NT: NGP1NT (NUC09 100.0 7.9E-52 1.7E-56 359.1 8.4 127 41-167 1-130 (130)
4 TIGR03596 GTPase_YlqF ribosome 100.0 1.1E-45 2.4E-50 366.7 25.3 257 196-457 5-275 (276)
5 PRK09563 rbgA GTPase YlqF; Rev 100.0 3.1E-45 6.6E-50 365.5 25.0 257 195-456 7-277 (287)
6 COG1161 Predicted GTPases [Gen 100.0 3.4E-43 7.5E-48 355.8 22.4 272 162-455 1-293 (322)
7 KOG1424 Predicted GTP-binding 100.0 4.8E-43 1E-47 360.6 23.6 366 71-452 41-469 (562)
8 cd01858 NGP_1 NGP-1. Autoanti 100.0 7.4E-33 1.6E-37 251.9 19.3 157 205-361 1-157 (157)
9 COG1160 Predicted GTPases [Gen 100.0 2.3E-29 4.9E-34 258.8 20.8 287 122-429 9-324 (444)
10 cd04178 Nucleostemin_like Nucl 100.0 5.6E-29 1.2E-33 230.9 16.9 148 214-361 1-172 (172)
11 cd01855 YqeH YqeH. YqeH is an 100.0 1.1E-28 2.4E-33 231.0 16.5 174 163-361 1-190 (190)
12 cd01856 YlqF YlqF. Proteins o 100.0 2.2E-27 4.8E-32 219.1 19.6 162 196-362 3-171 (171)
13 cd01857 HSR1_MMR1 HSR1/MMR1. 100.0 1.3E-27 2.9E-32 213.8 17.1 141 202-364 1-141 (141)
14 PRK13796 GTPase YqeH; Provisio 100.0 1.2E-27 2.6E-32 246.4 17.9 176 161-364 35-223 (365)
15 TIGR03597 GTPase_YqeH ribosome 99.9 3.1E-27 6.7E-32 243.0 17.4 179 160-365 28-218 (360)
16 KOG2485 Conserved ATP/GTP bind 99.9 9.8E-27 2.1E-31 228.6 19.8 257 195-455 29-318 (335)
17 cd01849 YlqF_related_GTPase Yl 99.9 9.1E-27 2E-31 211.5 18.0 146 214-361 1-155 (155)
18 cd01859 MJ1464 MJ1464. This f 99.9 3.9E-25 8.5E-30 200.4 18.7 155 202-361 1-156 (156)
19 PRK00093 GTP-binding protein D 99.9 1.5E-21 3.3E-26 205.1 24.5 240 175-425 49-313 (435)
20 TIGR03594 GTPase_EngA ribosome 99.9 6.3E-22 1.4E-26 207.4 21.1 241 176-427 48-315 (429)
21 PRK12289 GTPase RsgA; Reviewed 99.9 3.2E-22 7E-27 204.7 15.7 146 209-366 86-239 (352)
22 PRK03003 GTP-binding protein D 99.9 3.5E-21 7.6E-26 204.8 21.7 267 123-411 45-335 (472)
23 PRK09518 bifunctional cytidyla 99.9 7E-21 1.5E-25 211.7 23.1 225 176-411 324-574 (712)
24 TIGR00157 ribosome small subun 99.8 1.4E-20 3E-25 184.1 15.0 144 209-365 33-185 (245)
25 PRK12288 GTPase RsgA; Reviewed 99.8 1.8E-19 3.9E-24 184.4 15.9 144 209-365 117-271 (347)
26 cd01854 YjeQ_engC YjeQ/EngC. 99.8 3.5E-19 7.6E-24 178.0 15.5 145 209-365 75-227 (287)
27 PRK00098 GTPase RsgA; Reviewed 99.8 3.9E-19 8.4E-24 178.7 15.2 145 208-364 76-229 (298)
28 COG1162 Predicted GTPases [Gen 99.7 1.7E-15 3.6E-20 150.5 15.4 146 209-366 76-231 (301)
29 COG1159 Era GTPase [General fu 99.7 5.4E-16 1.2E-20 152.8 11.3 112 306-417 6-133 (298)
30 PRK01889 GTPase RsgA; Reviewed 99.6 1.2E-15 2.6E-20 157.0 13.0 144 209-365 109-261 (356)
31 PF02421 FeoB_N: Ferrous iron 99.6 2.5E-15 5.4E-20 137.2 10.5 100 307-409 1-116 (156)
32 COG1160 Predicted GTPases [Gen 99.6 1.8E-15 3.8E-20 156.6 9.9 105 307-411 4-125 (444)
33 COG0486 ThdF Predicted GTPase 99.5 3.1E-14 6.7E-19 147.8 10.5 105 304-409 215-335 (454)
34 COG1159 Era GTPase [General fu 99.5 5.3E-14 1.2E-18 138.8 10.6 160 122-300 12-173 (298)
35 COG0218 Predicted GTPase [Gene 99.5 2.2E-13 4.8E-18 127.9 13.1 123 305-427 23-166 (200)
36 PF01926 MMR_HSR1: 50S ribosom 99.4 6.1E-13 1.3E-17 114.4 9.2 99 308-407 1-116 (116)
37 TIGR00436 era GTP-binding prot 99.4 1.3E-12 2.9E-17 129.3 11.8 103 308-411 2-120 (270)
38 COG1084 Predicted GTPase [Gene 99.4 3.9E-12 8.5E-17 126.9 11.1 105 305-410 167-292 (346)
39 PRK00089 era GTPase Era; Revie 99.3 7.5E-12 1.6E-16 125.0 11.7 120 307-426 6-144 (292)
40 KOG1191 Mitochondrial GTPase [ 99.3 4.6E-12 1E-16 131.7 9.9 106 304-409 266-400 (531)
41 PRK12298 obgE GTPase CgtA; Rev 99.3 1.4E-11 3E-16 128.4 11.2 117 308-426 161-305 (390)
42 KOG1423 Ras-like GTPase ERA [C 99.3 1.1E-11 2.4E-16 122.4 9.7 119 304-422 70-209 (379)
43 TIGR03598 GTPase_YsxC ribosome 99.3 3.4E-11 7.4E-16 111.5 12.0 108 304-411 16-142 (179)
44 PF03193 DUF258: Protein of un 99.3 1.4E-11 3E-16 113.0 8.4 93 262-365 2-101 (161)
45 COG0370 FeoB Fe2+ transport sy 99.3 3.7E-11 8E-16 129.8 12.9 102 306-410 3-120 (653)
46 TIGR03594 GTPase_EngA ribosome 99.3 1.5E-11 3.3E-16 129.1 9.5 104 308-411 1-120 (429)
47 PRK15494 era GTPase Era; Provi 99.2 4.5E-11 9.8E-16 122.4 12.4 107 305-411 51-173 (339)
48 cd01852 AIG1 AIG1 (avrRpt2-ind 99.2 6.2E-11 1.3E-15 111.6 10.8 104 307-411 1-129 (196)
49 PRK00454 engB GTP-binding prot 99.2 1.9E-10 4.1E-15 107.0 12.9 109 304-412 22-149 (196)
50 PRK12297 obgE GTPase CgtA; Rev 99.2 1.7E-10 3.7E-15 121.2 12.1 117 308-426 160-301 (424)
51 PTZ00258 GTP-binding protein; 99.1 1.2E-10 2.7E-15 120.7 9.5 75 304-379 19-125 (390)
52 PRK00093 GTP-binding protein D 99.1 1.5E-10 3.2E-15 121.9 10.2 104 307-410 2-121 (435)
53 TIGR00450 mnmE_trmE_thdF tRNA 99.1 2.8E-10 6.1E-15 120.5 12.2 107 304-411 201-323 (442)
54 TIGR00436 era GTP-binding prot 99.1 2.1E-10 4.5E-15 113.7 10.4 158 123-300 7-165 (270)
55 PRK03003 GTP-binding protein D 99.1 2.8E-10 6.1E-15 121.5 11.6 106 305-410 37-158 (472)
56 PRK04213 GTP-binding protein; 99.1 4.3E-10 9.4E-15 105.5 11.6 121 305-427 8-159 (201)
57 TIGR03156 GTP_HflX GTP-binding 99.1 2.9E-10 6.4E-15 117.0 11.2 106 305-411 188-314 (351)
58 PRK09518 bifunctional cytidyla 99.1 3.5E-10 7.6E-15 126.5 12.6 106 306-411 275-396 (712)
59 cd04163 Era Era subfamily. Er 99.1 6.2E-10 1.3E-14 98.8 11.4 120 306-425 3-141 (168)
60 PRK12296 obgE GTPase CgtA; Rev 99.1 2.7E-10 5.9E-15 121.5 10.5 104 306-411 159-297 (500)
61 cd01894 EngA1 EngA1 subfamily. 99.1 3.8E-10 8.3E-15 100.1 9.5 104 310-413 1-120 (157)
62 TIGR02729 Obg_CgtA Obg family 99.1 3.5E-10 7.7E-15 115.4 10.4 119 307-426 158-303 (329)
63 KOG1489 Predicted GTP-binding 99.1 2.4E-10 5.1E-15 113.6 8.7 119 307-426 197-340 (366)
64 PRK05291 trmE tRNA modificatio 99.1 4E-10 8.7E-15 119.6 11.1 104 304-409 213-332 (449)
65 PRK12299 obgE GTPase CgtA; Rev 99.1 5.9E-10 1.3E-14 114.0 11.9 103 307-411 159-284 (335)
66 PRK09601 GTP-binding protein Y 99.1 3.5E-10 7.5E-15 116.3 9.8 72 307-379 3-106 (364)
67 cd01853 Toc34_like Toc34-like 99.1 7.2E-10 1.6E-14 108.9 11.5 61 304-364 29-92 (249)
68 PRK09866 hypothetical protein; 99.1 7E-10 1.5E-14 119.8 10.8 115 174-297 229-351 (741)
69 cd01895 EngA2 EngA2 subfamily. 99.1 1.7E-09 3.6E-14 97.2 11.8 120 306-425 2-144 (174)
70 PRK09554 feoB ferrous iron tra 99.0 1.2E-09 2.5E-14 122.7 12.8 119 306-427 3-143 (772)
71 COG0536 Obg Predicted GTPase [ 99.0 9E-10 1.9E-14 110.7 9.6 139 308-448 161-336 (369)
72 cd01900 YchF YchF subfamily. 99.0 4.2E-10 9.1E-15 111.9 6.9 70 309-379 1-102 (274)
73 PRK11058 GTPase HflX; Provisio 99.0 1.4E-09 3E-14 114.7 10.4 104 307-411 198-322 (426)
74 TIGR00991 3a0901s02IAP34 GTP-b 99.0 3.8E-09 8.1E-14 106.4 12.6 129 288-419 22-178 (313)
75 PRK00089 era GTPase Era; Revie 99.0 2.2E-09 4.7E-14 107.2 10.7 120 173-300 51-172 (292)
76 cd01897 NOG NOG1 is a nucleola 99.0 2.8E-09 6E-14 96.5 10.0 103 308-411 2-126 (168)
77 cd01898 Obg Obg subfamily. Th 99.0 3E-09 6.5E-14 96.3 10.2 101 308-410 2-126 (170)
78 cd04164 trmE TrmE (MnmE, ThdF, 99.0 2.6E-09 5.5E-14 94.7 9.4 104 306-411 1-120 (157)
79 cd01879 FeoB Ferrous iron tran 99.0 3.1E-09 6.7E-14 94.7 9.7 113 311-426 1-131 (158)
80 PF05049 IIGP: Interferon-indu 98.9 2.5E-09 5.4E-14 110.2 9.5 120 286-409 16-152 (376)
81 cd04104 p47_IIGP_like p47 (47- 98.9 5.6E-09 1.2E-13 98.6 11.1 103 306-410 1-119 (197)
82 TIGR02836 spore_IV_A stage IV 98.9 1E-08 2.2E-13 106.0 13.5 144 304-447 15-236 (492)
83 cd01876 YihA_EngB The YihA (En 98.9 4.9E-09 1.1E-13 93.4 9.8 103 309-411 2-123 (170)
84 PRK15494 era GTPase Era; Provi 98.9 3.8E-09 8.3E-14 108.2 9.6 119 173-300 98-217 (339)
85 COG1163 DRG Predicted GTPase [ 98.9 3.8E-09 8.2E-14 105.5 8.7 90 306-397 63-167 (365)
86 PF00009 GTP_EFTU: Elongation 98.9 5.8E-09 1.3E-13 97.5 8.9 96 202-299 83-187 (188)
87 COG2262 HflX GTPases [General 98.9 1.8E-08 4E-13 103.6 12.6 109 305-414 191-320 (411)
88 cd01887 IF2_eIF5B IF2/eIF5B (i 98.9 1.1E-08 2.3E-13 92.3 9.7 113 308-421 2-126 (168)
89 cd04171 SelB SelB subfamily. 98.9 7.8E-09 1.7E-13 92.5 8.5 105 308-412 2-118 (164)
90 PF10662 PduV-EutP: Ethanolami 98.9 1.3E-08 2.9E-13 91.6 9.9 91 200-295 51-142 (143)
91 cd01894 EngA1 EngA1 subfamily. 98.9 1.9E-08 4.1E-13 89.2 10.8 110 176-296 46-155 (157)
92 cd01881 Obg_like The Obg-like 98.8 6.1E-09 1.3E-13 94.5 7.1 100 311-411 1-133 (176)
93 cd04166 CysN_ATPS CysN_ATPS su 98.8 6.8E-09 1.5E-13 98.8 7.3 104 308-411 1-143 (208)
94 PRK09602 translation-associate 98.8 1.5E-08 3.2E-13 106.0 9.5 72 307-379 2-112 (396)
95 KOG1490 GTP-binding protein CR 98.8 2.7E-09 5.8E-14 111.4 3.8 142 303-446 165-343 (620)
96 TIGR00993 3a0901s04IAP86 chlor 98.8 3.7E-08 7.9E-13 107.0 12.4 60 306-365 118-180 (763)
97 cd01886 EF-G Elongation factor 98.8 2.1E-08 4.6E-13 99.7 9.7 120 308-427 1-146 (270)
98 cd01884 EF_Tu EF-Tu subfamily. 98.8 2.8E-08 6E-13 94.2 9.5 106 306-411 2-131 (195)
99 COG0012 Predicted GTPase, prob 98.8 1.3E-08 2.8E-13 103.9 6.8 72 306-378 2-106 (372)
100 cd01896 DRG The developmentall 98.8 3.9E-08 8.5E-13 95.6 10.0 89 308-398 2-105 (233)
101 cd01878 HflX HflX subfamily. 98.8 5.5E-08 1.2E-12 91.6 10.7 107 305-412 40-167 (204)
102 PF04548 AIG1: AIG1 family; I 98.8 2.2E-08 4.9E-13 95.8 8.1 90 307-397 1-110 (212)
103 cd01890 LepA LepA subfamily. 98.7 3.8E-08 8.2E-13 90.0 9.1 120 308-427 2-149 (179)
104 cd01888 eIF2_gamma eIF2-gamma 98.7 7E-08 1.5E-12 91.6 11.0 110 175-299 83-199 (203)
105 cd00880 Era_like Era (E. coli 98.7 9.4E-08 2E-12 83.4 10.6 102 311-412 1-118 (163)
106 cd01889 SelB_euk SelB subfamil 98.7 3.6E-08 7.8E-13 92.2 8.3 105 307-411 1-133 (192)
107 cd00881 GTP_translation_factor 98.7 5.3E-08 1.2E-12 89.2 8.8 104 308-411 1-127 (189)
108 cd01898 Obg Obg subfamily. Th 98.7 3.4E-08 7.3E-13 89.3 7.3 115 176-297 49-169 (170)
109 cd01899 Ygr210 Ygr210 subfamil 98.7 4E-08 8.7E-13 99.9 8.3 70 309-379 1-109 (318)
110 COG3596 Predicted GTPase [Gene 98.7 4.6E-08 9.9E-13 96.1 7.9 106 303-409 36-159 (296)
111 PRK12317 elongation factor 1-a 98.7 8.5E-08 1.8E-12 101.1 10.5 109 303-411 3-152 (425)
112 cd01861 Rab6 Rab6 subfamily. 98.7 1.1E-07 2.4E-12 85.2 9.4 117 308-426 2-136 (161)
113 cd04171 SelB SelB subfamily. 98.7 2E-07 4.3E-12 83.4 11.0 106 176-296 52-163 (164)
114 KOG1249 Predicted GTPases [Gen 98.7 3.9E-08 8.5E-13 103.6 7.1 157 161-343 76-261 (572)
115 cd01879 FeoB Ferrous iron tran 98.7 1E-07 2.2E-12 84.8 8.9 113 176-298 44-156 (158)
116 CHL00071 tufA elongation facto 98.7 8.9E-08 1.9E-12 100.6 9.7 109 303-411 9-141 (409)
117 PRK15467 ethanolamine utilizat 98.6 9.9E-08 2.1E-12 87.0 8.7 109 308-427 3-120 (158)
118 PF00350 Dynamin_N: Dynamin fa 98.6 1.1E-07 2.5E-12 86.3 9.1 31 309-339 1-31 (168)
119 PF02421 FeoB_N: Ferrous iron 98.6 1.4E-09 3E-14 99.6 -3.5 150 123-294 7-156 (156)
120 cd04163 Era Era subfamily. Er 98.6 2.6E-07 5.6E-12 81.9 11.1 113 177-297 53-167 (168)
121 cd00154 Rab Rab family. Rab G 98.6 1.8E-07 4E-12 82.2 9.3 104 307-410 1-117 (159)
122 smart00178 SAR Sar1p-like memb 98.6 2.8E-07 6.1E-12 85.7 11.0 115 304-420 15-142 (184)
123 cd00881 GTP_translation_factor 98.6 2E-07 4.4E-12 85.3 9.8 108 176-299 63-187 (189)
124 TIGR00231 small_GTP small GTP- 98.6 1E-07 2.2E-12 83.1 7.5 105 307-412 2-122 (161)
125 cd04168 TetM_like Tet(M)-like 98.6 1.5E-07 3.2E-12 91.9 9.3 120 308-427 1-146 (237)
126 cd04155 Arl3 Arl3 subfamily. 98.6 2.5E-07 5.5E-12 84.1 10.3 117 291-411 2-128 (173)
127 PRK12298 obgE GTPase CgtA; Rev 98.6 1.5E-07 3.2E-12 98.4 9.7 168 114-300 157-334 (390)
128 cd04165 GTPBP1_like GTPBP1-lik 98.6 2.5E-07 5.4E-12 89.5 10.4 105 177-297 86-221 (224)
129 TIGR00437 feoB ferrous iron tr 98.6 2.1E-07 4.6E-12 102.0 11.1 95 313-410 1-111 (591)
130 PLN03127 Elongation factor Tu; 98.6 3.3E-07 7.2E-12 97.3 12.0 110 302-411 57-190 (447)
131 cd01889 SelB_euk SelB subfamil 98.6 3.2E-07 6.9E-12 85.8 10.6 108 176-299 69-186 (192)
132 cd04170 EF-G_bact Elongation f 98.6 2.2E-07 4.8E-12 91.9 9.8 120 308-427 1-146 (268)
133 cd01890 LepA LepA subfamily. 98.6 2.4E-07 5.3E-12 84.7 9.3 107 175-298 67-176 (179)
134 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.6 4.3E-07 9.4E-12 83.5 10.9 117 305-422 14-142 (174)
135 TIGR02528 EutP ethanolamine ut 98.6 3.9E-07 8.6E-12 80.3 10.2 102 179-295 39-141 (142)
136 cd01895 EngA2 EngA2 subfamily. 98.6 6.5E-07 1.4E-11 80.2 11.7 90 205-296 77-172 (174)
137 cd01891 TypA_BipA TypA (tyrosi 98.6 2.4E-07 5.3E-12 86.7 9.2 114 307-420 3-140 (194)
138 TIGR00484 EF-G translation elo 98.6 2.7E-07 5.8E-12 103.1 10.9 121 307-427 11-157 (689)
139 TIGR02729 Obg_CgtA Obg family 98.6 1.7E-07 3.6E-12 95.9 8.5 116 176-298 206-328 (329)
140 cd04154 Arl2 Arl2 subfamily. 98.6 2.2E-07 4.7E-12 85.1 8.5 105 305-410 13-127 (173)
141 cd04156 ARLTS1 ARLTS1 subfamil 98.6 2.1E-07 4.6E-12 83.4 8.2 103 308-410 1-113 (160)
142 PRK15467 ethanolamine utilizat 98.5 5.1E-07 1.1E-11 82.3 10.5 106 179-299 41-147 (158)
143 cd04169 RF3 RF3 subfamily. Pe 98.5 3.8E-07 8.2E-12 90.6 10.3 120 308-427 4-153 (267)
144 TIGR00092 GTP-binding protein 98.5 2.2E-07 4.7E-12 95.9 8.7 72 307-378 3-106 (368)
145 PRK00007 elongation factor G; 98.5 2.4E-07 5.2E-12 103.5 9.8 122 306-427 10-157 (693)
146 cd01866 Rab2 Rab2 subfamily. 98.5 6E-07 1.3E-11 81.8 10.7 121 307-427 5-141 (168)
147 PRK12739 elongation factor G; 98.5 2.1E-07 4.5E-12 104.0 9.1 122 306-427 8-155 (691)
148 cd01884 EF_Tu EF-Tu subfamily. 98.5 4.9E-07 1.1E-11 85.6 10.3 98 174-287 64-171 (195)
149 cd01863 Rab18 Rab18 subfamily. 98.5 7.6E-07 1.6E-11 79.9 11.0 120 307-426 1-136 (161)
150 COG2262 HflX GTPases [General 98.5 2.8E-07 6.1E-12 94.9 9.0 112 178-299 243-356 (411)
151 cd04145 M_R_Ras_like M-Ras/R-R 98.5 9.1E-07 2E-11 79.3 11.2 120 306-427 2-139 (164)
152 cd00878 Arf_Arl Arf (ADP-ribos 98.5 3.4E-07 7.4E-12 82.0 8.4 104 308-412 1-114 (158)
153 PRK12299 obgE GTPase CgtA; Rev 98.5 3.7E-07 7.9E-12 93.6 9.5 117 177-300 208-329 (335)
154 KOG1491 Predicted GTP-binding 98.5 2.5E-07 5.4E-12 93.1 8.0 63 304-367 18-100 (391)
155 PF00009 GTP_EFTU: Elongation 98.5 3.6E-07 7.7E-12 85.4 8.7 107 305-411 2-135 (188)
156 cd01850 CDC_Septin CDC/Septin. 98.5 1.1E-06 2.4E-11 87.7 12.6 107 305-412 3-157 (276)
157 PRK00049 elongation factor Tu; 98.5 5E-07 1.1E-11 94.6 10.6 109 304-412 10-142 (396)
158 PRK12735 elongation factor Tu; 98.5 4.8E-07 1.1E-11 94.7 10.4 109 303-411 9-141 (396)
159 PRK09866 hypothetical protein; 98.5 1.5E-06 3.2E-11 94.5 14.3 72 351-422 230-317 (741)
160 PRK05506 bifunctional sulfate 98.5 1.8E-07 3.8E-12 103.6 7.5 111 301-411 19-170 (632)
161 cd04119 RJL RJL (RabJ-Like) su 98.5 8.6E-07 1.9E-11 79.4 10.6 120 307-426 1-141 (168)
162 smart00175 RAB Rab subfamily o 98.5 1.1E-06 2.4E-11 78.7 10.9 119 307-427 1-137 (164)
163 PRK12296 obgE GTPase CgtA; Rev 98.5 7.9E-07 1.7E-11 95.2 11.4 118 175-300 206-341 (500)
164 TIGR00487 IF-2 translation ini 98.5 8.8E-07 1.9E-11 97.0 11.7 115 305-420 86-210 (587)
165 cd04149 Arf6 Arf6 subfamily. 98.5 4.8E-07 1E-11 83.0 8.1 104 305-410 8-122 (168)
166 TIGR03156 GTP_HflX GTP-binding 98.5 5.8E-07 1.3E-11 92.7 9.5 111 176-297 238-350 (351)
167 PLN03118 Rab family protein; P 98.5 1.2E-06 2.5E-11 83.3 10.8 143 305-448 13-177 (211)
168 cd04164 trmE TrmE (MnmE, ThdF, 98.5 6.6E-07 1.4E-11 79.1 8.5 106 177-298 51-156 (157)
169 cd04139 RalA_RalB RalA/RalB su 98.4 7.5E-07 1.6E-11 79.6 8.7 118 307-426 1-136 (164)
170 cd01868 Rab11_like Rab11-like. 98.4 1.1E-06 2.4E-11 79.3 9.8 120 307-426 4-139 (165)
171 cd04151 Arl1 Arl1 subfamily. 98.4 5.3E-07 1.1E-11 81.1 7.6 102 308-411 1-113 (158)
172 cd01881 Obg_like The Obg-like 98.4 3.7E-07 8E-12 82.7 6.6 114 176-296 45-174 (176)
173 cd01860 Rab5_related Rab5-rela 98.4 1.3E-06 2.8E-11 78.3 10.1 120 307-426 2-137 (163)
174 cd04160 Arfrp1 Arfrp1 subfamil 98.4 6.3E-07 1.4E-11 80.9 7.7 103 308-410 1-119 (167)
175 cd01882 BMS1 Bms1. Bms1 is an 98.4 1E-06 2.2E-11 85.2 9.5 118 304-423 37-161 (225)
176 cd04138 H_N_K_Ras_like H-Ras/N 98.4 1.8E-06 3.8E-11 76.9 10.2 118 307-426 2-136 (162)
177 cd01897 NOG NOG1 is a nucleola 98.4 1.3E-06 2.8E-11 78.9 9.4 85 212-297 79-166 (168)
178 COG0486 ThdF Predicted GTPase 98.4 8.1E-07 1.8E-11 93.0 9.0 108 179-299 269-376 (454)
179 cd04124 RabL2 RabL2 subfamily. 98.4 2.8E-06 6E-11 76.9 11.5 120 307-426 1-132 (161)
180 cd04157 Arl6 Arl6 subfamily. 98.4 8.4E-07 1.8E-11 79.4 8.0 103 308-411 1-117 (162)
181 PTZ00327 eukaryotic translatio 98.4 1.6E-06 3.6E-11 92.3 11.5 110 176-300 118-234 (460)
182 cd04161 Arl2l1_Arl13_like Arl2 98.4 1.2E-06 2.7E-11 80.0 9.2 110 308-419 1-123 (167)
183 cd01878 HflX HflX subfamily. 98.4 1.9E-06 4.2E-11 81.0 10.6 112 176-297 90-203 (204)
184 smart00173 RAS Ras subfamily o 98.4 1.7E-06 3.7E-11 77.8 9.8 117 308-426 2-136 (164)
185 cd01862 Rab7 Rab7 subfamily. 98.4 2E-06 4.3E-11 77.7 10.3 120 307-426 1-140 (172)
186 cd04137 RheB Rheb (Ras Homolog 98.4 1E-06 2.2E-11 80.9 8.4 119 307-426 2-137 (180)
187 KOG1423 Ras-like GTPase ERA [C 98.4 8.5E-07 1.9E-11 88.2 8.1 125 172-299 117-271 (379)
188 cd01864 Rab19 Rab19 subfamily. 98.4 2.8E-06 6.2E-11 76.8 11.0 121 306-427 3-140 (165)
189 PRK05306 infB translation init 98.4 1.7E-06 3.8E-11 97.3 11.6 118 304-422 288-414 (787)
190 cd01893 Miro1 Miro1 subfamily. 98.4 1.6E-06 3.5E-11 78.7 9.4 103 307-410 1-115 (166)
191 TIGR00485 EF-Tu translation el 98.4 1.8E-06 3.8E-11 90.4 10.6 109 303-411 9-141 (394)
192 PTZ00133 ADP-ribosylation fact 98.4 2.5E-06 5.5E-11 79.3 10.6 105 304-410 15-130 (182)
193 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.4 1.4E-06 3.1E-11 80.8 8.9 106 306-411 3-122 (183)
194 TIGR02528 EutP ethanolamine ut 98.4 8E-07 1.7E-11 78.4 6.8 107 308-427 2-119 (142)
195 cd01867 Rab8_Rab10_Rab13_like 98.4 2.6E-06 5.7E-11 77.4 10.3 122 306-427 3-140 (167)
196 cd01865 Rab3 Rab3 subfamily. 98.4 2.3E-06 4.9E-11 77.6 9.8 120 307-427 2-138 (165)
197 PRK00454 engB GTP-binding prot 98.3 2.2E-06 4.9E-11 79.6 9.6 120 176-299 71-194 (196)
198 cd04118 Rab24 Rab24 subfamily. 98.3 2.6E-06 5.6E-11 79.2 10.0 102 307-410 1-117 (193)
199 cd00157 Rho Rho (Ras homology) 98.3 2.3E-06 5E-11 77.2 9.4 102 307-410 1-116 (171)
200 PRK12736 elongation factor Tu; 98.3 1.7E-06 3.6E-11 90.6 9.5 109 303-411 9-141 (394)
201 cd00880 Era_like Era (E. coli 98.3 2.6E-06 5.6E-11 74.2 9.3 113 176-297 46-162 (163)
202 KOG1486 GTP-binding protein DR 98.3 1.5E-06 3.1E-11 84.5 8.1 91 305-397 61-166 (364)
203 cd04158 ARD1 ARD1 subfamily. 98.3 2.1E-06 4.6E-11 78.4 8.8 101 308-410 1-112 (169)
204 TIGR00475 selB selenocysteine- 98.3 2.3E-06 4.9E-11 93.9 10.5 105 307-411 1-116 (581)
205 cd01885 EF2 EF2 (for archaea a 98.3 3E-06 6.6E-11 82.0 10.2 104 308-411 2-138 (222)
206 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.3 3.2E-06 6.9E-11 76.4 9.8 118 307-427 3-139 (166)
207 cd04136 Rap_like Rap-like subf 98.3 4.1E-06 8.8E-11 75.0 10.4 118 307-426 2-137 (163)
208 PRK05124 cysN sulfate adenylyl 98.3 2E-06 4.3E-11 92.1 9.8 110 302-411 23-173 (474)
209 PRK13768 GTPase; Provisional 98.3 1.9E-06 4.1E-11 84.9 8.9 116 176-299 98-247 (253)
210 cd04157 Arl6 Arl6 subfamily. 98.3 1.8E-06 4E-11 77.2 8.0 88 208-295 64-160 (162)
211 cd04175 Rap1 Rap1 subgroup. T 98.3 4.2E-06 9E-11 75.5 10.4 119 307-427 2-138 (164)
212 cd04113 Rab4 Rab4 subfamily. 98.3 3.3E-06 7.1E-11 75.8 9.6 120 307-426 1-136 (161)
213 PLN03126 Elongation factor Tu; 98.3 4E-06 8.7E-11 89.8 11.6 110 302-411 77-210 (478)
214 cd04112 Rab26 Rab26 subfamily. 98.3 4E-06 8.7E-11 78.3 10.3 120 307-427 1-138 (191)
215 cd00879 Sar1 Sar1 subfamily. 98.3 2E-06 4.4E-11 79.7 8.2 105 304-410 17-132 (190)
216 CHL00189 infB translation init 98.3 1.7E-06 3.6E-11 96.7 8.8 117 304-421 242-371 (742)
217 cd01887 IF2_eIF5B IF2/eIF5B (i 98.3 5.6E-06 1.2E-10 74.5 10.7 107 176-298 51-165 (168)
218 cd04159 Arl10_like Arl10-like 98.3 3.7E-06 7.9E-11 74.0 9.2 101 309-411 2-114 (159)
219 cd04125 RabA_like RabA-like su 98.3 5.3E-06 1.1E-10 77.0 10.7 120 307-427 1-137 (188)
220 cd01851 GBP Guanylate-binding 98.3 1.1E-06 2.5E-11 84.9 6.4 61 306-366 7-75 (224)
221 cd04150 Arf1_5_like Arf1-Arf5- 98.3 2.2E-06 4.7E-11 77.7 7.8 113 307-421 1-126 (159)
222 smart00053 DYNc Dynamin, GTPas 98.3 1.2E-05 2.6E-10 78.7 13.5 137 288-424 5-218 (240)
223 PRK04213 GTP-binding protein; 98.3 4.2E-06 9.1E-11 78.5 9.8 121 177-300 54-193 (201)
224 cd01861 Rab6 Rab6 subfamily. 98.3 2.3E-06 5E-11 76.6 7.6 90 206-297 66-160 (161)
225 PRK04000 translation initiatio 98.3 4.3E-06 9.2E-11 88.1 10.8 110 176-300 86-202 (411)
226 KOG0410 Predicted GTP binding 98.3 1.2E-06 2.7E-11 87.7 6.2 104 306-409 178-305 (410)
227 cd04106 Rab23_lke Rab23-like s 98.3 3E-06 6.5E-11 75.9 8.3 120 307-427 1-138 (162)
228 cd04101 RabL4 RabL4 (Rab-like4 98.3 6.4E-06 1.4E-10 74.0 10.4 119 307-426 1-138 (164)
229 COG0218 Predicted GTPase [Gene 98.3 3.8E-06 8.2E-11 79.4 9.0 172 109-299 17-197 (200)
230 PRK10512 selenocysteinyl-tRNA- 98.3 4.4E-06 9.6E-11 92.1 11.1 107 178-300 54-167 (614)
231 TIGR00503 prfC peptide chain r 98.3 5.1E-06 1.1E-10 90.0 11.4 123 305-427 10-162 (527)
232 cd04122 Rab14 Rab14 subfamily. 98.3 8.8E-06 1.9E-10 73.7 11.3 119 307-427 3-139 (166)
233 cd04116 Rab9 Rab9 subfamily. 98.3 6E-06 1.3E-10 74.9 10.2 123 305-427 4-145 (170)
234 cd04132 Rho4_like Rho4-like su 98.3 7.2E-06 1.6E-10 75.8 10.8 119 307-427 1-141 (187)
235 smart00177 ARF ARF-like small 98.3 6.3E-06 1.4E-10 76.0 10.4 104 305-410 12-126 (175)
236 cd04156 ARLTS1 ARLTS1 subfamil 98.3 2.1E-06 4.6E-11 76.8 7.0 89 208-296 63-159 (160)
237 cd04151 Arl1 Arl1 subfamily. 98.2 2.9E-06 6.3E-11 76.2 7.7 88 208-295 62-156 (158)
238 PTZ00099 rab6; Provisional 98.2 3.3E-06 7.1E-11 78.6 8.2 92 209-301 49-144 (176)
239 PRK05291 trmE tRNA modificatio 98.2 3.2E-06 6.9E-11 90.0 9.1 105 177-298 265-369 (449)
240 TIGR03680 eif2g_arch translati 98.2 7.6E-06 1.7E-10 86.0 11.8 109 177-300 82-197 (406)
241 cd04177 RSR1 RSR1 subgroup. R 98.2 6.5E-06 1.4E-10 74.8 9.9 119 307-426 2-137 (168)
242 cd04160 Arfrp1 Arfrp1 subfamil 98.2 2.6E-06 5.7E-11 76.8 7.3 86 208-295 69-165 (167)
243 cd01893 Miro1 Miro1 subfamily. 98.2 3.4E-06 7.3E-11 76.7 7.9 92 207-298 65-163 (166)
244 cd04148 RGK RGK subfamily. Th 98.2 2.4E-05 5.2E-10 75.3 14.1 103 307-409 1-117 (221)
245 cd04123 Rab21 Rab21 subfamily. 98.2 5.9E-06 1.3E-10 73.5 9.2 119 307-426 1-136 (162)
246 KOG2486 Predicted GTPase [Gene 98.2 3E-06 6.5E-11 83.5 7.7 106 304-409 134-259 (320)
247 COG4917 EutP Ethanolamine util 98.2 6.4E-06 1.4E-10 72.2 8.9 93 200-297 52-144 (148)
248 cd04142 RRP22 RRP22 subfamily. 98.2 6.8E-06 1.5E-10 77.8 10.0 116 307-423 1-144 (198)
249 cd04124 RabL2 RabL2 subfamily. 98.2 7.3E-06 1.6E-10 74.2 9.7 90 207-298 67-157 (161)
250 PRK10512 selenocysteinyl-tRNA- 98.2 3.2E-06 7E-11 93.2 8.8 104 308-411 2-117 (614)
251 KOG1547 Septin CDC10 and relat 98.2 2.1E-06 4.6E-11 82.9 6.3 82 283-366 25-119 (336)
252 cd04176 Rap2 Rap2 subgroup. T 98.2 1.3E-05 2.8E-10 72.1 11.2 118 307-426 2-137 (163)
253 cd04167 Snu114p Snu114p subfam 98.2 3.9E-06 8.4E-11 80.1 8.2 104 308-411 2-136 (213)
254 cd04127 Rab27A Rab27a subfamil 98.2 9.5E-06 2.1E-10 74.3 10.4 122 306-427 4-152 (180)
255 cd04109 Rab28 Rab28 subfamily. 98.2 8.2E-06 1.8E-10 77.9 10.4 119 307-427 1-141 (215)
256 cd01862 Rab7 Rab7 subfamily. 98.2 7.6E-06 1.6E-10 73.9 9.7 91 207-299 67-167 (172)
257 PRK11058 GTPase HflX; Provisio 98.2 6.3E-06 1.4E-10 87.2 10.4 114 177-299 247-362 (426)
258 TIGR00491 aIF-2 translation in 98.2 3.1E-06 6.7E-11 92.7 8.3 103 306-410 4-133 (590)
259 TIGR03598 GTPase_YsxC ribosome 98.2 4.4E-06 9.5E-11 77.2 8.1 77 210-288 98-179 (179)
260 PRK12297 obgE GTPase CgtA; Rev 98.2 4.2E-06 9.1E-11 88.3 8.9 115 176-300 207-328 (424)
261 cd04166 CysN_ATPS CysN_ATPS su 98.2 7.5E-06 1.6E-10 77.9 9.9 101 174-289 76-184 (208)
262 cd00876 Ras Ras family. The R 98.2 3.6E-06 7.9E-11 74.7 7.2 117 308-426 1-135 (160)
263 cd04135 Tc10 TC10 subfamily. 98.2 1.4E-05 3E-10 72.6 11.1 102 307-411 1-117 (174)
264 cd01891 TypA_BipA TypA (tyrosi 98.2 4.7E-06 1E-10 78.0 8.1 97 176-288 66-171 (194)
265 cd04101 RabL4 RabL4 (Rab-like4 98.2 6.2E-06 1.3E-10 74.1 8.6 89 207-297 70-162 (164)
266 cd01892 Miro2 Miro2 subfamily. 98.2 1.9E-05 4.1E-10 72.4 11.9 121 304-427 2-140 (169)
267 cd04108 Rab36_Rab34 Rab34/Rab3 98.2 1.2E-05 2.7E-10 73.7 10.8 119 308-426 2-139 (170)
268 smart00178 SAR Sar1p-like memb 98.2 3.7E-06 8.1E-11 78.2 7.3 107 176-296 62-182 (184)
269 CHL00071 tufA elongation facto 98.2 1E-05 2.2E-10 85.2 11.3 110 174-299 74-211 (409)
270 PRK00741 prfC peptide chain re 98.2 8.6E-06 1.9E-10 88.3 11.1 122 306-427 10-161 (526)
271 PLN03108 Rab family protein; P 98.2 2.2E-05 4.8E-10 74.7 12.7 146 306-451 6-175 (210)
272 TIGR00475 selB selenocysteine- 98.2 1.5E-05 3.2E-10 87.5 12.8 108 177-300 52-167 (581)
273 cd04153 Arl5_Arl8 Arl5/Arl8 su 98.2 5.1E-06 1.1E-10 76.4 7.6 88 208-295 78-172 (174)
274 cd00877 Ran Ran (Ras-related n 98.2 8.7E-06 1.9E-10 74.3 9.1 104 307-410 1-116 (166)
275 cd04140 ARHI_like ARHI subfami 98.2 8.5E-06 1.8E-10 73.8 9.0 102 307-411 2-121 (165)
276 cd04158 ARD1 ARD1 subfamily. 98.2 4.5E-06 9.7E-11 76.3 7.1 93 208-300 62-162 (169)
277 smart00174 RHO Rho (Ras homolo 98.2 1.8E-05 3.8E-10 72.0 11.0 100 309-410 1-114 (174)
278 cd04150 Arf1_5_like Arf1-Arf5- 98.2 6.5E-06 1.4E-10 74.6 8.1 88 208-295 63-157 (159)
279 smart00175 RAB Rab subfamily o 98.2 1.1E-05 2.4E-10 72.1 9.5 93 205-299 65-162 (164)
280 cd04149 Arf6 Arf6 subfamily. 98.2 5.4E-06 1.2E-10 76.0 7.6 86 208-295 72-166 (168)
281 smart00177 ARF ARF-like small 98.2 6.9E-06 1.5E-10 75.7 8.2 90 209-298 77-173 (175)
282 cd04110 Rab35 Rab35 subfamily. 98.2 1.6E-05 3.5E-10 74.8 10.9 143 306-449 6-168 (199)
283 cd00154 Rab Rab family. Rab G 98.2 8.9E-06 1.9E-10 71.4 8.5 89 205-295 65-158 (159)
284 cd04154 Arl2 Arl2 subfamily. 98.1 7E-06 1.5E-10 75.1 8.0 88 208-295 77-171 (173)
285 cd04112 Rab26 Rab26 subfamily. 98.1 9.8E-06 2.1E-10 75.7 9.1 94 207-300 68-164 (191)
286 PTZ00416 elongation factor 2; 98.1 4.6E-06 1E-10 95.1 8.1 122 305-426 18-184 (836)
287 cd01876 YihA_EngB The YihA (En 98.1 2.1E-05 4.6E-10 69.8 10.7 119 176-297 46-169 (170)
288 PRK00049 elongation factor Tu; 98.1 1.2E-05 2.6E-10 84.3 10.5 110 174-299 74-203 (396)
289 cd04144 Ras2 Ras2 subfamily. 98.1 1.2E-05 2.6E-10 75.0 9.5 117 308-427 1-138 (190)
290 PRK04004 translation initiatio 98.1 7.4E-06 1.6E-10 89.9 9.2 103 306-410 6-135 (586)
291 cd04152 Arl4_Arl7 Arl4/Arl7 su 98.1 1.1E-05 2.3E-10 75.0 9.0 91 209-299 72-170 (183)
292 TIGR01393 lepA GTP-binding pro 98.1 9.7E-06 2.1E-10 89.2 10.1 121 307-427 4-152 (595)
293 PRK10218 GTP-binding protein; 98.1 1.5E-05 3.2E-10 87.8 11.3 118 307-424 6-147 (607)
294 PLN03110 Rab GTPase; Provision 98.1 1.5E-05 3.2E-10 76.4 10.0 121 306-427 12-149 (216)
295 cd04107 Rab32_Rab38 Rab38/Rab3 98.1 2E-05 4.4E-10 74.1 10.7 121 307-427 1-142 (201)
296 PLN03127 Elongation factor Tu; 98.1 1E-05 2.2E-10 86.0 9.7 111 173-299 122-252 (447)
297 cd01883 EF1_alpha Eukaryotic e 98.1 5.8E-06 1.3E-10 79.4 7.1 104 308-411 1-150 (219)
298 PLN00223 ADP-ribosylation fact 98.1 1.6E-05 3.4E-10 74.0 9.6 105 304-410 15-130 (181)
299 cd04114 Rab30 Rab30 subfamily. 98.1 1.6E-05 3.5E-10 71.8 9.3 103 306-411 7-125 (169)
300 cd04146 RERG_RasL11_like RERG/ 98.1 1.4E-05 3E-10 72.2 8.8 117 308-427 1-138 (165)
301 cd01864 Rab19 Rab19 subfamily. 98.1 1.7E-05 3.7E-10 71.7 9.1 90 207-296 70-163 (165)
302 cd00878 Arf_Arl Arf (ADP-ribos 98.1 1.2E-05 2.7E-10 71.8 8.1 88 208-295 62-156 (158)
303 PRK05124 cysN sulfate adenylyl 98.1 2E-05 4.4E-10 84.4 11.1 101 174-289 106-215 (474)
304 cd04115 Rab33B_Rab33A Rab33B/R 98.1 2.8E-05 6.1E-10 70.8 10.4 121 306-426 2-140 (170)
305 cd01865 Rab3 Rab3 subfamily. 98.1 1.9E-05 4.2E-10 71.5 9.1 90 207-298 68-162 (165)
306 cd04128 Spg1 Spg1p. Spg1p (se 98.1 2E-05 4.3E-10 73.5 9.4 92 208-299 68-166 (182)
307 PRK12736 elongation factor Tu; 98.1 2.3E-05 4.9E-10 82.1 10.8 109 175-299 75-201 (394)
308 PRK09554 feoB ferrous iron tra 98.1 7.9E-06 1.7E-10 92.2 7.7 157 123-298 10-167 (772)
309 PRK05433 GTP-binding protein L 98.1 1.3E-05 2.8E-10 88.3 9.1 110 175-301 74-186 (600)
310 TIGR02034 CysN sulfate adenyly 98.1 4.5E-06 9.7E-11 87.7 5.4 105 307-411 1-146 (406)
311 cd04114 Rab30 Rab30 subfamily. 98.0 2.3E-05 5E-10 70.8 9.3 91 207-297 74-167 (169)
312 PRK12735 elongation factor Tu; 98.0 3.3E-05 7.2E-10 80.9 11.6 111 173-299 73-203 (396)
313 PTZ00369 Ras-like protein; Pro 98.0 3.5E-05 7.6E-10 71.8 10.5 145 305-450 4-173 (189)
314 PLN00116 translation elongatio 98.0 1.7E-05 3.7E-10 90.6 10.0 107 305-411 18-163 (843)
315 cd04147 Ras_dva Ras-dva subfam 98.0 1.3E-05 2.8E-10 75.3 7.6 102 308-411 1-117 (198)
316 TIGR01394 TypA_BipA GTP-bindin 98.0 1.9E-05 4.1E-10 86.8 9.9 116 308-423 3-142 (594)
317 cd01883 EF1_alpha Eukaryotic e 98.0 2.7E-05 5.8E-10 74.8 9.8 97 177-288 79-194 (219)
318 cd04145 M_R_Ras_like M-Ras/R-R 98.0 2.2E-05 4.9E-10 70.2 8.6 88 208-297 69-162 (164)
319 cd04119 RJL RJL (RabJ-Like) su 98.0 2.8E-05 6.1E-10 69.5 9.3 86 209-297 69-165 (168)
320 cd04111 Rab39 Rab39 subfamily. 98.0 2.5E-05 5.4E-10 74.6 9.3 121 306-427 2-141 (211)
321 cd00882 Ras_like_GTPase Ras-li 98.0 1E-05 2.2E-10 69.3 6.0 102 311-412 1-116 (157)
322 cd04106 Rab23_lke Rab23-like s 98.0 2.4E-05 5.2E-10 70.0 8.6 87 208-296 70-160 (162)
323 TIGR01393 lepA GTP-binding pro 98.0 2.4E-05 5.2E-10 86.1 10.2 110 175-301 70-182 (595)
324 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 98.0 2.5E-05 5.5E-10 70.5 8.7 90 207-298 69-163 (166)
325 cd01863 Rab18 Rab18 subfamily. 98.0 2.3E-05 5.1E-10 70.1 8.3 88 207-296 67-159 (161)
326 cd04127 Rab27A Rab27a subfamil 98.0 3.1E-05 6.8E-10 70.8 9.3 90 207-298 81-176 (180)
327 cd01866 Rab2 Rab2 subfamily. 98.0 3.8E-05 8.2E-10 69.9 9.8 92 205-298 69-165 (168)
328 cd01870 RhoA_like RhoA-like su 98.0 3.3E-05 7.1E-10 70.3 9.3 102 307-410 2-117 (175)
329 PRK12317 elongation factor 1-a 98.0 2.6E-05 5.6E-10 82.4 9.8 100 175-289 84-195 (425)
330 TIGR02034 CysN sulfate adenyly 98.0 4.4E-05 9.5E-10 80.3 11.4 99 176-289 81-187 (406)
331 PRK13351 elongation factor G; 98.0 2.2E-05 4.7E-10 87.9 9.5 122 306-427 8-155 (687)
332 cd04141 Rit_Rin_Ric Rit/Rin/Ri 98.0 5.8E-05 1.3E-09 69.4 10.8 140 306-449 2-165 (172)
333 PTZ00133 ADP-ribosylation fact 98.0 2.6E-05 5.7E-10 72.5 8.5 91 208-298 80-177 (182)
334 cd01868 Rab11_like Rab11-like. 98.0 3.8E-05 8.2E-10 69.2 9.3 88 208-297 71-163 (165)
335 cd04109 Rab28 Rab28 subfamily. 98.0 2.5E-05 5.5E-10 74.5 8.5 88 209-298 70-165 (215)
336 cd04105 SR_beta Signal recogni 98.0 2.4E-05 5.3E-10 74.3 8.4 102 308-411 2-122 (203)
337 cd04110 Rab35 Rab35 subfamily. 98.0 3.3E-05 7.2E-10 72.7 9.2 90 207-298 73-166 (199)
338 PF08477 Miro: Miro-like prote 98.0 2.2E-05 4.7E-10 67.0 7.2 70 308-377 1-81 (119)
339 cd04140 ARHI_like ARHI subfami 98.0 2.3E-05 4.9E-10 71.0 7.7 89 209-297 69-163 (165)
340 TIGR00437 feoB ferrous iron tr 98.0 1.8E-05 4E-10 86.9 8.4 113 176-298 42-154 (591)
341 cd04108 Rab36_Rab34 Rab34/Rab3 98.0 3.6E-05 7.7E-10 70.7 9.0 90 208-299 68-165 (170)
342 cd01886 EF-G Elongation factor 98.0 2.3E-05 4.9E-10 78.1 8.2 95 174-284 63-160 (270)
343 cd04159 Arl10_like Arl10-like 98.0 2.3E-05 5.1E-10 68.9 7.3 88 207-296 62-158 (159)
344 cd04122 Rab14 Rab14 subfamily. 98.0 5.9E-05 1.3E-09 68.3 10.1 88 207-296 69-161 (166)
345 cd01867 Rab8_Rab10_Rab13_like 98.0 5.6E-05 1.2E-09 68.6 10.0 90 207-298 70-164 (167)
346 cd04117 Rab15 Rab15 subfamily. 97.9 7.2E-05 1.6E-09 67.7 10.5 119 307-426 1-136 (161)
347 cd04132 Rho4_like Rho4-like su 97.9 3.6E-05 7.8E-10 71.1 8.7 90 209-299 69-167 (187)
348 PRK05506 bifunctional sulfate 97.9 4.9E-05 1.1E-09 84.3 11.2 110 173-297 102-231 (632)
349 cd04162 Arl9_Arfrp2_like Arl9/ 97.9 3.8E-05 8.2E-10 70.0 8.6 100 309-410 2-111 (164)
350 cd04126 Rab20 Rab20 subfamily. 97.9 4.4E-05 9.5E-10 73.8 9.4 102 307-410 1-112 (220)
351 PF00025 Arf: ADP-ribosylation 97.9 6.9E-05 1.5E-09 69.4 10.3 116 304-421 12-140 (175)
352 cd04118 Rab24 Rab24 subfamily. 97.9 4.1E-05 8.8E-10 71.2 8.8 91 209-299 70-166 (193)
353 smart00173 RAS Ras subfamily o 97.9 3.9E-05 8.4E-10 68.9 8.1 88 209-298 68-161 (164)
354 TIGR00483 EF-1_alpha translati 97.9 4.1E-05 9E-10 80.9 9.6 109 303-411 4-154 (426)
355 TIGR01394 TypA_BipA GTP-bindin 97.9 5E-05 1.1E-09 83.5 10.5 113 173-301 62-193 (594)
356 PLN03071 GTP-binding nuclear p 97.9 4.9E-05 1.1E-09 73.0 9.2 107 304-410 11-129 (219)
357 PRK05433 GTP-binding protein L 97.9 3.8E-05 8.3E-10 84.6 9.5 121 307-427 8-156 (600)
358 cd04136 Rap_like Rap-like subf 97.9 3.7E-05 8E-10 68.8 7.8 88 209-296 69-160 (163)
359 cd04165 GTPBP1_like GTPBP1-lik 97.9 6.8E-05 1.5E-09 72.6 10.2 104 308-411 1-151 (224)
360 cd00882 Ras_like_GTPase Ras-li 97.9 3.9E-05 8.4E-10 65.6 7.6 89 207-295 63-156 (157)
361 cd04142 RRP22 RRP22 subfamily. 97.9 6.6E-05 1.4E-09 71.0 9.8 94 205-298 73-173 (198)
362 cd00877 Ran Ran (Ras-related n 97.9 4.2E-05 9.1E-10 69.8 8.0 89 209-298 69-158 (166)
363 cd04138 H_N_K_Ras_like H-Ras/N 97.9 6.1E-05 1.3E-09 66.9 8.9 87 209-297 69-160 (162)
364 smart00174 RHO Rho (Ras homolo 97.9 3.7E-05 8E-10 69.8 7.6 89 209-297 66-170 (174)
365 cd00879 Sar1 Sar1 subfamily. 97.9 4.6E-05 9.9E-10 70.6 8.2 90 208-297 82-189 (190)
366 cd01860 Rab5_related Rab5-rela 97.9 6.2E-05 1.3E-09 67.4 8.8 91 208-298 69-162 (163)
367 cd04139 RalA_RalB RalA/RalB su 97.9 6.8E-05 1.5E-09 66.9 9.0 92 207-298 66-161 (164)
368 PF00735 Septin: Septin; Inte 97.9 2.2E-05 4.8E-10 78.6 6.2 59 306-364 4-76 (281)
369 cd00876 Ras Ras family. The R 97.9 6.7E-05 1.4E-09 66.5 8.7 90 207-296 65-158 (160)
370 cd01892 Miro2 Miro2 subfamily. 97.9 4E-05 8.8E-10 70.2 7.5 88 209-298 74-165 (169)
371 TIGR00490 aEF-2 translation el 97.9 3.3E-05 7.2E-10 86.8 8.2 106 305-410 18-150 (720)
372 cd04121 Rab40 Rab40 subfamily. 97.9 0.0001 2.2E-09 69.4 10.2 92 208-299 74-167 (189)
373 PTZ00141 elongation factor 1- 97.8 3.9E-05 8.4E-10 81.7 8.1 106 304-409 5-156 (446)
374 cd04144 Ras2 Ras2 subfamily. 97.8 7E-05 1.5E-09 69.8 8.8 90 208-299 66-163 (190)
375 cd04176 Rap2 Rap2 subgroup. T 97.8 3.2E-05 6.9E-10 69.5 6.3 88 209-296 69-160 (163)
376 cd04130 Wrch_1 Wrch-1 subfamil 97.8 0.00021 4.6E-09 65.2 11.9 102 307-410 1-116 (173)
377 TIGR00485 EF-Tu translation el 97.8 9.5E-05 2.1E-09 77.4 10.6 107 176-298 76-200 (394)
378 TIGR00483 EF-1_alpha translati 97.8 9.1E-05 2E-09 78.3 10.5 101 175-289 85-197 (426)
379 cd01874 Cdc42 Cdc42 subfamily. 97.8 4.6E-05 9.9E-10 70.4 7.2 88 209-296 69-172 (175)
380 PLN00223 ADP-ribosylation fact 97.8 8.1E-05 1.8E-09 69.2 8.8 90 209-298 81-177 (181)
381 cd04175 Rap1 Rap1 subgroup. T 97.8 7.1E-05 1.5E-09 67.4 8.1 89 209-297 69-161 (164)
382 PRK10218 GTP-binding protein; 97.8 0.00011 2.3E-09 81.0 10.9 111 175-301 68-197 (607)
383 CHL00189 infB translation init 97.8 0.00012 2.6E-09 82.1 11.3 89 208-298 314-409 (742)
384 cd04143 Rhes_like Rhes_like su 97.8 0.00011 2.4E-09 72.2 9.9 113 307-422 1-141 (247)
385 cd04147 Ras_dva Ras-dva subfam 97.8 9.5E-05 2.1E-09 69.5 9.1 91 209-299 67-163 (198)
386 PRK07560 elongation factor EF- 97.8 5.1E-05 1.1E-09 85.5 8.4 105 306-410 20-151 (731)
387 cd04123 Rab21 Rab21 subfamily. 97.8 0.00013 2.7E-09 64.8 9.3 87 209-297 69-160 (162)
388 cd04107 Rab32_Rab38 Rab38/Rab3 97.8 0.00014 3E-09 68.5 9.9 90 208-299 69-168 (201)
389 PF10662 PduV-EutP: Ethanolami 97.8 7.7E-05 1.7E-09 67.3 7.8 93 308-413 3-104 (143)
390 cd04113 Rab4 Rab4 subfamily. 97.8 0.00011 2.4E-09 65.8 8.9 88 207-296 67-159 (161)
391 PRK12740 elongation factor G; 97.8 7.3E-05 1.6E-09 83.4 8.8 116 312-427 1-142 (668)
392 TIGR00491 aIF-2 translation in 97.8 0.00017 3.7E-09 79.2 11.4 88 209-298 89-215 (590)
393 cd04146 RERG_RasL11_like RERG/ 97.8 7.5E-05 1.6E-09 67.4 7.2 91 208-298 67-163 (165)
394 cd04168 TetM_like Tet(M)-like 97.7 0.0001 2.2E-09 72.0 8.6 69 173-257 62-130 (237)
395 cd01874 Cdc42 Cdc42 subfamily. 97.7 0.0002 4.2E-09 66.1 10.1 103 307-410 2-117 (175)
396 cd04134 Rho3 Rho3 subfamily. 97.7 0.00014 3E-09 67.9 9.1 102 308-410 2-116 (189)
397 PLN03118 Rab family protein; P 97.7 0.00012 2.7E-09 69.4 8.9 90 208-299 81-177 (211)
398 cd01888 eIF2_gamma eIF2-gamma 97.7 7.1E-05 1.5E-09 70.9 7.1 106 307-412 1-151 (203)
399 TIGR03680 eif2g_arch translati 97.7 4.6E-05 9.9E-10 80.1 6.2 106 305-411 3-147 (406)
400 TIGR00450 mnmE_trmE_thdF tRNA 97.7 0.00013 2.8E-09 77.6 9.7 107 177-298 253-359 (442)
401 cd04121 Rab40 Rab40 subfamily. 97.7 0.00023 5E-09 67.0 10.4 123 305-427 5-142 (189)
402 PRK14845 translation initiatio 97.7 0.00015 3.2E-09 84.0 10.7 90 208-299 545-673 (1049)
403 cd01896 DRG The developmentall 97.7 0.0002 4.3E-09 69.7 10.2 49 244-298 177-225 (233)
404 cd04141 Rit_Rin_Ric Rit/Rin/Ri 97.7 0.00016 3.4E-09 66.5 9.0 90 209-298 70-163 (172)
405 cd04130 Wrch_1 Wrch-1 subfamil 97.7 9.4E-05 2E-09 67.6 7.5 86 209-294 68-169 (173)
406 cd01871 Rac1_like Rac1-like su 97.7 0.00011 2.4E-09 67.7 7.8 88 209-296 69-172 (174)
407 cd04148 RGK RGK subfamily. Th 97.7 0.00011 2.4E-09 70.7 8.1 90 212-301 72-165 (221)
408 cd00157 Rho Rho (Ras homology) 97.7 9.1E-05 2E-09 66.7 7.1 88 209-296 68-170 (171)
409 PLN03126 Elongation factor Tu; 97.7 0.00024 5.2E-09 76.3 11.3 94 176-285 145-248 (478)
410 PRK05306 infB translation init 97.7 0.00012 2.5E-09 82.8 9.2 88 208-297 356-450 (787)
411 COG1100 GTPase SAR1 and relate 97.7 0.00022 4.8E-09 67.4 9.8 106 307-412 6-125 (219)
412 KOG0462 Elongation factor-type 97.7 0.00012 2.5E-09 78.1 8.5 110 175-300 125-236 (650)
413 cd04125 RabA_like RabA-like su 97.7 0.0002 4.4E-09 66.4 9.3 91 207-299 67-162 (188)
414 cd04126 Rab20 Rab20 subfamily. 97.7 0.00012 2.7E-09 70.6 8.1 88 209-298 64-189 (220)
415 cd04111 Rab39 Rab39 subfamily. 97.7 0.00012 2.5E-09 69.9 7.6 92 208-301 71-168 (211)
416 PLN03071 GTP-binding nuclear p 97.7 0.00012 2.6E-09 70.3 7.5 87 209-298 82-171 (219)
417 TIGR00231 small_GTP small GTP- 97.7 5.8E-05 1.3E-09 65.6 4.9 90 203-295 71-160 (161)
418 cd04167 Snu114p Snu114p subfam 97.7 7.7E-05 1.7E-09 71.1 6.1 65 176-256 72-136 (213)
419 cd01870 RhoA_like RhoA-like su 97.7 0.00019 4.1E-09 65.3 8.4 89 209-297 69-173 (175)
420 cd01873 RhoBTB RhoBTB subfamil 97.7 0.00012 2.6E-09 69.2 7.3 88 209-296 84-193 (195)
421 cd01871 Rac1_like Rac1-like su 97.7 0.00025 5.4E-09 65.4 9.2 102 307-410 2-117 (174)
422 cd04143 Rhes_like Rhes_like su 97.6 0.00025 5.4E-09 69.7 9.5 91 209-299 68-171 (247)
423 cd04116 Rab9 Rab9 subfamily. 97.6 0.0003 6.4E-09 63.7 9.4 87 208-296 73-168 (170)
424 PTZ00369 Ras-like protein; Pro 97.6 0.00018 3.8E-09 67.1 8.1 89 209-299 73-167 (189)
425 TIGR00487 IF-2 translation ini 97.6 0.00019 4E-09 78.9 9.5 87 208-296 154-247 (587)
426 cd04120 Rab12 Rab12 subfamily. 97.6 0.00027 5.9E-09 67.3 9.4 91 208-298 68-162 (202)
427 cd04161 Arl2l1_Arl13_like Arl2 97.6 0.00035 7.6E-09 63.7 9.7 86 208-295 62-165 (167)
428 smart00176 RAN Ran (Ras-relate 97.6 0.00026 5.6E-09 67.4 9.0 88 208-298 63-153 (200)
429 COG0481 LepA Membrane GTPase L 97.6 6.4E-05 1.4E-09 78.9 5.2 122 163-301 64-188 (603)
430 cd04155 Arl3 Arl3 subfamily. 97.6 0.00024 5.3E-09 64.4 8.4 89 207-295 76-171 (173)
431 cd04133 Rop_like Rop subfamily 97.6 0.0002 4.3E-09 66.6 7.9 90 209-298 69-172 (176)
432 PRK12739 elongation factor G; 97.6 0.00017 3.7E-09 80.8 8.7 95 173-284 71-169 (691)
433 PLN03110 Rab GTPase; Provision 97.6 0.00039 8.5E-09 66.5 10.0 92 206-299 78-174 (216)
434 PRK04004 translation initiatio 97.6 0.00044 9.4E-09 76.1 11.6 87 208-296 90-215 (586)
435 KOG1249 Predicted GTPases [Gen 97.6 7.2E-05 1.6E-09 79.4 5.1 117 244-365 244-375 (572)
436 cd04131 Rnd Rnd subfamily. Th 97.6 0.00084 1.8E-08 62.3 11.8 120 307-427 2-149 (178)
437 COG3276 SelB Selenocysteine-sp 97.6 0.00068 1.5E-08 70.9 12.1 108 176-298 51-161 (447)
438 PF00025 Arf: ADP-ribosylation 97.6 0.00014 3E-09 67.3 6.4 89 209-297 78-174 (175)
439 cd04135 Tc10 TC10 subfamily. 97.6 0.00021 4.5E-09 64.9 7.3 88 209-296 68-171 (174)
440 COG0532 InfB Translation initi 97.6 0.00048 1E-08 73.5 10.9 85 211-298 77-169 (509)
441 PF00071 Ras: Ras family; Int 97.6 0.00037 8.1E-09 62.3 8.8 119 308-426 1-135 (162)
442 cd04134 Rho3 Rho3 subfamily. 97.6 0.00026 5.6E-09 66.0 8.0 90 209-298 68-173 (189)
443 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.6 0.00038 8.3E-09 67.8 9.4 90 209-298 81-187 (232)
444 cd04129 Rho2 Rho2 subfamily. 97.6 0.00041 8.8E-09 64.5 9.2 102 307-409 2-116 (187)
445 COG0536 Obg Predicted GTPase [ 97.5 0.00057 1.2E-08 69.4 10.7 115 178-300 210-334 (369)
446 cd04133 Rop_like Rop subfamily 97.5 0.0012 2.5E-08 61.4 12.1 119 307-427 2-147 (176)
447 cd04128 Spg1 Spg1p. Spg1p (se 97.5 0.00044 9.6E-09 64.4 9.3 119 307-426 1-140 (182)
448 KOG1489 Predicted GTP-binding 97.5 0.00054 1.2E-08 68.9 10.3 91 204-297 266-365 (366)
449 KOG0448 Mitofusin 1 GTPase, in 97.5 0.00055 1.2E-08 74.7 11.0 121 304-424 107-287 (749)
450 KOG1487 GTP-binding protein DR 97.5 0.00027 5.8E-09 69.3 7.7 60 307-367 60-122 (358)
451 TIGR00503 prfC peptide chain r 97.5 0.00038 8.2E-09 75.7 9.8 68 173-256 78-145 (527)
452 PRK00007 elongation factor G; 97.5 0.00027 5.9E-09 79.3 8.8 94 174-284 74-171 (693)
453 cd01875 RhoG RhoG subfamily. 97.5 0.00031 6.6E-09 65.8 7.7 90 209-298 71-176 (191)
454 PLN00023 GTP-binding protein; 97.5 0.0017 3.6E-08 66.4 13.3 124 305-429 20-191 (334)
455 cd04162 Arl9_Arfrp2_like Arl9/ 97.5 0.00026 5.6E-09 64.5 6.9 86 208-295 63-162 (164)
456 cd04103 Centaurin_gamma Centau 97.5 0.00028 6.1E-09 64.1 7.0 87 210-296 63-156 (158)
457 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.5 0.0014 2.9E-08 61.3 11.6 121 305-427 4-153 (182)
458 PRK04000 translation initiatio 97.5 0.00021 4.5E-09 75.3 6.6 108 304-411 7-152 (411)
459 cd04131 Rnd Rnd subfamily. Th 97.5 0.00042 9E-09 64.4 7.9 88 209-296 69-173 (178)
460 PRK00741 prfC peptide chain re 97.4 0.00041 8.9E-09 75.4 8.9 68 174-257 78-145 (526)
461 cd04115 Rab33B_Rab33A Rab33B/R 97.4 0.0008 1.7E-08 61.2 9.5 87 208-296 71-166 (170)
462 PLN03108 Rab family protein; P 97.4 0.00073 1.6E-08 64.3 9.5 88 208-297 74-166 (210)
463 PTZ00141 elongation factor 1- 97.4 0.00075 1.6E-08 71.9 10.6 106 176-297 86-223 (446)
464 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 97.4 0.0013 2.9E-08 63.6 11.4 121 306-427 1-149 (222)
465 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 97.4 0.0004 8.6E-09 64.9 7.5 88 209-296 73-177 (182)
466 cd04129 Rho2 Rho2 subfamily. 97.4 0.00047 1E-08 64.1 7.9 91 209-299 69-173 (187)
467 cd04117 Rab15 Rab15 subfamily. 97.4 0.00091 2E-08 60.5 9.4 87 208-296 68-159 (161)
468 KOG2655 Septin family protein 97.4 0.00021 4.6E-09 73.4 5.7 62 304-365 19-93 (366)
469 cd04120 Rab12 Rab12 subfamily. 97.4 0.0011 2.4E-08 63.1 10.2 139 308-449 2-164 (202)
470 COG5257 GCD11 Translation init 97.4 0.00028 6.1E-09 71.1 6.3 91 209-301 106-204 (415)
471 COG2229 Predicted GTPase [Gene 97.4 0.001 2.2E-08 62.0 9.6 94 200-297 82-176 (187)
472 TIGR00484 EF-G translation elo 97.4 0.00036 7.8E-09 78.3 7.7 96 173-285 73-172 (689)
473 COG5019 CDC3 Septin family pro 97.4 0.00032 6.9E-09 71.8 6.5 62 304-365 21-96 (373)
474 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 97.3 0.0053 1.1E-07 59.9 14.2 141 306-448 13-188 (232)
475 COG4108 PrfC Peptide chain rel 97.3 0.00097 2.1E-08 69.7 9.3 122 306-427 12-163 (528)
476 COG1163 DRG Predicted GTPase [ 97.3 0.00051 1.1E-08 69.3 7.1 116 171-299 106-289 (365)
477 cd04137 RheB Rheb (Ras Homolog 97.3 0.0016 3.5E-08 59.5 9.8 91 209-299 69-163 (180)
478 cd01885 EF2 EF2 (for archaea a 97.3 0.00057 1.2E-08 66.2 7.0 67 174-256 72-138 (222)
479 KOG1191 Mitochondrial GTPase [ 97.3 0.00052 1.1E-08 72.5 7.1 97 201-298 337-449 (531)
480 cd04102 RabL3 RabL3 (Rab-like3 97.3 0.00081 1.7E-08 64.1 7.8 104 307-410 1-141 (202)
481 cd01852 AIG1 AIG1 (avrRpt2-ind 97.3 0.00078 1.7E-08 63.3 7.6 124 174-301 48-186 (196)
482 cd04103 Centaurin_gamma Centau 97.3 0.0019 4.1E-08 58.6 9.7 116 307-425 1-131 (158)
483 PRK12740 elongation factor G; 97.2 0.00079 1.7E-08 75.2 8.4 68 174-257 59-126 (668)
484 smart00053 DYNc Dynamin, GTPas 97.2 0.00091 2E-08 65.6 7.8 90 177-271 127-218 (240)
485 cd04104 p47_IIGP_like p47 (47- 97.2 0.0016 3.5E-08 61.4 9.2 112 177-301 54-186 (197)
486 cd01882 BMS1 Bms1. Bms1 is an 97.2 0.0014 3E-08 63.4 8.9 78 205-284 96-181 (225)
487 PTZ00132 GTP-binding nuclear p 97.2 0.00084 1.8E-08 63.8 7.3 58 305-362 8-69 (215)
488 PRK09435 membrane ATPase/prote 97.2 0.0013 2.8E-08 67.5 9.0 102 175-299 149-260 (332)
489 cd04170 EF-G_bact Elongation f 97.2 0.00053 1.1E-08 67.8 6.0 97 175-288 64-162 (268)
490 COG1217 TypA Predicted membran 97.2 0.0018 3.8E-08 68.2 9.5 114 171-301 64-197 (603)
491 cd01875 RhoG RhoG subfamily. 97.2 0.0037 7.9E-08 58.5 10.8 103 306-410 3-119 (191)
492 KOG0075 GTP-binding ADP-ribosy 97.2 0.0041 8.9E-08 56.3 10.3 98 200-300 79-183 (186)
493 KOG1145 Mitochondrial translat 97.1 0.0034 7.3E-08 67.3 11.2 103 179-298 205-315 (683)
494 PRK13351 elongation factor G; 97.1 0.0019 4.1E-08 72.5 9.4 68 174-257 72-139 (687)
495 cd04177 RSR1 RSR1 subgroup. R 97.1 0.002 4.3E-08 58.4 8.0 88 209-296 69-161 (168)
496 PF04670 Gtr1_RagA: Gtr1/RagA 97.1 0.0024 5.2E-08 62.3 8.7 104 308-411 1-124 (232)
497 COG1084 Predicted GTPase [Gene 97.1 0.0037 8.1E-08 63.3 10.1 113 178-297 218-334 (346)
498 PF01926 MMR_HSR1: 50S ribosom 97.1 0.00039 8.4E-09 59.5 2.7 71 174-252 46-116 (116)
499 PTZ00327 eukaryotic translatio 97.0 0.0011 2.4E-08 70.9 6.7 107 304-411 32-184 (460)
500 KOG0073 GTP-binding ADP-ribosy 97.0 0.011 2.3E-07 54.5 11.5 144 305-449 15-179 (185)
No 1
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=100.00 E-value=9.6e-133 Score=991.24 Aligned_cols=445 Identities=58% Similarity=0.952 Sum_probs=432.5
Q ss_pred ccccccCCCCCCCCCCCCCCC--CCCCcccHHhhhhhhhccC-CcCCCCCCCcccc-cccCCCCCCccccCCCcccccee
Q 012726 5 KEKKVNVSGKPKHSLDANRTD--GKSGSRSASTVRRLNMYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTR 80 (457)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~r~~p~~~wf~~~~ 80 (457)
++++.+....++||+||+|.. |+++||+++||+|||||++ ||+||+.|+|+++ +||+..+|.||||||||||||||
T Consensus 5 ~k~k~~~~~~~~hs~np~r~~~k~~~~~r~k~tv~rL~Myrs~k~krns~Gkil~~a~fQss~~~~aRieP~rkWFgntR 84 (572)
T KOG2423|consen 5 KKEKSRTIRESKHSTNPGRLRGKGENNYRNKKTVKRLNMYRSGKPKRNSKGKILKAAPFQSSLAPVARIEPDRKWFGNTR 84 (572)
T ss_pred ccccccccCCccccCCccccccccccccccHHHHHHHHHHhccCcccccCCccccccccccccCcccccCCCchhccCce
Confidence 667788888999999999986 8999999999999999995 9999999999995 89999999999999999999999
Q ss_pred eechHHHHHHHHHHHhhhcCCcEEEecCCCCCccccchhhhhhhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHH
Q 012726 81 CVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRA 160 (457)
Q Consensus 81 ~~~q~~l~~f~~~~~~~~~~~~~~~~~~~~~p~~ll~~~~~~~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~ 160 (457)
||+|++|++||++|+++++|||+||||++|||||||+|..+..|+|+||+|+|+++||+|+|||||+|.++|+|+|.+.+
T Consensus 85 vI~q~~Lq~Fr~e~g~~~~dpyqVllk~~KlPmSLL~e~~k~~rvhvldtesF~~tFG~KsqRKRp~L~~s~le~L~k~a 164 (572)
T KOG2423|consen 85 VISQTELQKFREELGKKLKDPYQVLLKQSKLPMSLLQEKTKTPRVHVLDTESFEDTFGPKSQRKRPKLTASSLEELSKAA 164 (572)
T ss_pred eecHHHHHHHHHHHHhhhcChhhheeecCCCChhhhhccccCcceeeecccchhhhhCchhhhcCcccchhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh
Q 012726 161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH 240 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~ 240 (457)
+..+..|++....+. ..+..|+....++++|.+|||+|+|.++|++|+++||||+|+|||||+|++|.++++||+++
T Consensus 165 ~e~~~~yee~~~~~~---~~e~~g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke 241 (572)
T KOG2423|consen 165 EESDDKYEEKKLGDL---REEEDGVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKE 241 (572)
T ss_pred hhhhhhhhhhccccc---hhhcccchHHHHHHHHhccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhc
Confidence 999999999855542 24567899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchH
Q 012726 241 CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKS 320 (457)
Q Consensus 241 ~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKS 320 (457)
.+|||+|+|||||||+|.|++..|+..|+++||+++||+|..++||.+.|+++|+|++.++.++++|.||||||||||||
T Consensus 242 ~phKHli~vLNKvDLVPtwvt~~Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKS 321 (572)
T KOG2423|consen 242 KPHKHLIYVLNKVDLVPTWVTAKWVRHLSKEYPTIAFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKS 321 (572)
T ss_pred CCcceeEEEeeccccccHHHHHHHHHHHhhhCcceeeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCCCccceEEEeccccCCcccHHHHHHHHHHhcCcc
Q 012726 321 SVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE 400 (457)
Q Consensus 321 SliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~ 400 (457)
|+||+|..+++|.|+|+||.|++|||+.++++|+||||||+++|..+++++++|+||++++++++|++||..+|+||.++
T Consensus 322 SiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~ivLkGvVRVenv~~pe~yi~~vl~R~k~e 401 (572)
T KOG2423|consen 322 SIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVLKGVVRVENVKNPEDYIDGVLERCKPE 401 (572)
T ss_pred HHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHHhhceeeeeecCCHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhhcCCCCCCCHHHHHHHHHHHcCCcccCCcccHHHHHHHHHHHHHhchh
Q 012726 401 HLKRAYKIKDWVDENDFLLQLCKSTGKLLRVCLFLHFISWYLFFYDHITNLA 452 (457)
Q Consensus 401 ~l~~~y~i~~~~~~~efL~~la~r~g~l~kgg~pD~~~aa~~~l~d~~~g~~ 452 (457)
+|...|+|+.|+|.++||+.||.+.|+|+|||+||+..+|+||||||++|+.
T Consensus 402 hl~rtYkI~~w~d~~dfle~La~k~GkLlKGGEPd~~~vsKmvLnDwqRGki 453 (572)
T KOG2423|consen 402 HLSRTYKISGWNDSTDFLEKLAIKQGKLLKGGEPDLVVVSKMVLNDWQRGKI 453 (572)
T ss_pred HHHhhhCCCccccHHHHHHHHHHHhCccccCCCCchhHHHHHHhhHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999986
No 2
>KOG2484 consensus GTPase [General function prediction only]
Probab=100.00 E-value=4.3e-51 Score=409.67 Aligned_cols=258 Identities=36% Similarity=0.572 Sum_probs=239.5
Q ss_pred chHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEE
Q 012726 198 QSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAF 277 (457)
Q Consensus 198 ~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f 277 (457)
+-+...+++.++++.+||||+|+|||||+|++|+.+++++....++|++||||||+||+|.++++.|+.||++++|+++|
T Consensus 132 s~kaY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~f 211 (435)
T KOG2484|consen 132 SKKAYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAF 211 (435)
T ss_pred hHHHHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCccee
Confidence 33677899999999999999999999999999999999998655679999999999999999999999999999999999
Q ss_pred Eeecc------------CCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE
Q 012726 278 HASIN------------KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ 345 (457)
Q Consensus 278 ~iSa~------------~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~ 345 (457)
.+|.. ..+|.+.|+..|..++....-+..|+|||||+|||||||+||+|..++.|.|++.||.|+..|
T Consensus 212 kast~~~~~~~~~~~~s~c~gae~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smq 291 (435)
T KOG2484|consen 212 KASTQMQNSNSKNLQSSVCFGAETLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQ 291 (435)
T ss_pred ecccccccccccccccchhhhHHHHHHHhcCcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhh
Confidence 87643 225888899999988876656789999999999999999999999999999999999999999
Q ss_pred EEEcCCcEEEEecCCcccCCCCCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHHc
Q 012726 346 YITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKST 425 (457)
Q Consensus 346 ~~~~~~~i~liDtPGi~~~~~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r~ 425 (457)
+++++.+|.|+|+||++++..++...++|+.++++..+.+|...+..+|.+|..+.+...|.++.+...++||+.+|+++
T Consensus 292 eV~Ldk~i~llDsPgiv~~~~~~~~~~~Lrn~~~i~~~~dp~~~v~~iL~~~~~e~~~~~Y~~~~~~~~~~Fl~~~ar~~ 371 (435)
T KOG2484|consen 292 EVKLDKKIRLLDSPGIVPPSIDEKDALALRNCIPIGKVADPVTPVSCILKRCSKESRSVLYNIPSIRATDDFLEKFARRR 371 (435)
T ss_pred heeccCCceeccCCceeecCCCccchhhhhcccccccccCccchHHHHHHHhhHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 99999999999999999988776557999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCcccHHHHHHHHHHHHHhchhcCC
Q 012726 426 GKLLRVCLFLHFISWYLFFYDHITNLASVG 455 (457)
Q Consensus 426 g~l~kgg~pD~~~aa~~~l~d~~~g~~~~~ 455 (457)
|++.+||.||++.||+.||+||+.|+.+--
T Consensus 372 G~~~kGG~pd~~~AA~~vl~Dw~~Gki~y~ 401 (435)
T KOG2484|consen 372 GLLLKGGIPDVNAAAFAVLNDWRTGKIGYY 401 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHhhccCceeee
Confidence 999999999999999999999999998753
No 3
>PF08153 NGP1NT: NGP1NT (NUC091) domain; InterPro: IPR012971 This N-terminal domain is found in a subfamily of hypothetical nucleolar GTP-binding proteins similar to human NGP1 [].
Probab=100.00 E-value=7.9e-52 Score=359.10 Aligned_cols=127 Identities=57% Similarity=1.014 Sum_probs=122.7
Q ss_pred hccC-CcCCCCCCCcccc-cccCCCCCCccccCCCccccceeeechHHHHHHHHHHHhhhcCCcEEEecCCCCCccccch
Q 012726 41 MYKT-RPKRDRKGKVLQH-EFQSKELPNTRIQPDRRWFGNTRCVNQKQLEFFREELQSHMSSSYNVILREKKLPFSLLND 118 (457)
Q Consensus 41 ~~~~-~~~~~~~~~~~~~-~~~~~~~~~~r~~p~~~wf~~~~~~~q~~l~~f~~~~~~~~~~~~~~~~~~~~~p~~ll~~ 118 (457)
||++ ||+||++||||++ .||+.+.++||||||||||||||||+|++|++||+||+++.+|||+||||++|||||||+|
T Consensus 1 My~~gk~~Rn~~Gkiik~a~~q~~~~~~aRI~PdRrWFgNTRvI~Q~~L~~FReem~~~~~DPy~VlLk~~KLPmsLL~d 80 (130)
T PF08153_consen 1 MYKSGKPKRNRKGKIIKAAPFQSKEGPPARIEPDRRWFGNTRVISQEALEKFREEMGEKVKDPYSVLLKRSKLPMSLLQD 80 (130)
T ss_pred CCCCCCcccCCCCCEeechhccCCCCCccccccchhhhcCceEECHHHHHHHHHHHHHhhcCCceEeeeCCcCCHHHhcc
Confidence 9998 9999999999996 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hhhhhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHH
Q 012726 119 H-QKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAF 167 (457)
Q Consensus 119 ~-~~~~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~ 167 (457)
. .+..++|+|++|||++|||+|+|||||+|.++|+|+|++.++..+..|
T Consensus 81 ~~~k~~~~~il~te~F~~tFGpKaqRKRpkL~~~~~eeLa~~a~~~~~~Y 130 (130)
T PF08153_consen 81 SGTKQKRVHILETEPFEDTFGPKAQRKRPKLSVSSLEELAKKAEESQESY 130 (130)
T ss_pred cccccCCcceeecCCHHHHhCCcccccCccccccCHHHHHHHHHHhhccC
Confidence 8 889999999999999999999999999999999999999998876654
No 4
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=100.00 E-value=1.1e-45 Score=366.75 Aligned_cols=257 Identities=28% Similarity=0.392 Sum_probs=224.5
Q ss_pred ccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCee
Q 012726 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (457)
Q Consensus 196 ~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~ 275 (457)
+|||.+++++++++++++|+||+|+||++|++++++.+++++. ++|+|+|+||+||++......|.+++... ...
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~----~kp~IiVlNK~DL~~~~~~~~~~~~~~~~-~~~ 79 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG----NKPRLIVLNKADLADPAVTKQWLKYFEEK-GIK 79 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC----CCCEEEEEEccccCCHHHHHHHHHHHHHc-CCe
Confidence 7999999999999999999999999999999999998888773 68999999999999877678898888653 234
Q ss_pred EEEeeccCCCChHHHHHHHHHHHHhhcC--------ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE
Q 012726 276 AFHASINKSFGKGSLLSVLRQFARLKSD--------KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 347 (457)
Q Consensus 276 ~f~iSa~~~~Gi~~Li~~L~~~~~~~~~--------~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~ 347 (457)
++.+|+.++.|+..|++.|.++++.... ...++++++|+||||||||||+|++...+.+++.||+|+.++++
T Consensus 80 vi~iSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~ 159 (276)
T TIGR03596 80 ALAINAKKGKGVKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI 159 (276)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEE
Confidence 5778999999999999999988875431 24688999999999999999999999999999999999999999
Q ss_pred EcCCcEEEEecCCcccCCCCCc---cceEEEeccccCCc--ccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHH
Q 012726 348 TLTKRIFLIDCPGVVYQNKDSE---TDIVLKGVVRVTNL--EDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQL 421 (457)
Q Consensus 348 ~~~~~i~liDtPGi~~~~~~~e---~dlvL~gvv~~~~l--~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~l 421 (457)
.++.+++|+||||++.+...+. ..+++.|++..+.+ .++..++.+.|.+..+..|...|+++.+ .+.++||+.+
T Consensus 160 ~~~~~~~l~DtPG~~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~i~~~~~~~~~~l~~~ 239 (276)
T TIGR03596 160 KLSDGLELLDTPGILWPKFEDQEVGLKLAATGAIKDEALDLEDVALFLLEYLLEHYPERLKERYKLDELPEDIVELLEAI 239 (276)
T ss_pred EeCCCEEEEECCCcccCCCCchHHHHHHHHhCCcccccCChHHHHHHHHHHHHhhCHHHHHHHhCcCCCCCCHHHHHHHH
Confidence 9988999999999998875442 34567787776543 4556788888999888899999999865 4899999999
Q ss_pred HHHcCCcccCCcccHHHHHHHHHHHHHhchhcCCCC
Q 012726 422 CKSTGKLLRVCLFLHFISWYLFFYDHITNLASVGHL 457 (457)
Q Consensus 422 a~r~g~l~kgg~pD~~~aa~~~l~d~~~g~~~~~~~ 457 (457)
|+++|++.|||+||+++||+.||+||+.|++|--+|
T Consensus 240 a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~l 275 (276)
T TIGR03596 240 AKKRGCLLKGGELDLDRAAEILLNDFRKGKLGRITL 275 (276)
T ss_pred HHHhCccccCCccCHHHHHHHHHHHHHcCCCCceec
Confidence 999999999999999999999999999999986554
No 5
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=100.00 E-value=3.1e-45 Score=365.53 Aligned_cols=257 Identities=27% Similarity=0.381 Sum_probs=223.1
Q ss_pred cccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCe
Q 012726 195 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS 274 (457)
Q Consensus 195 ~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~ 274 (457)
-+|||.+.+++++++++.+|+||+|+|||+|++++++.+++++. ++|+|+|+||+||++......|.+++.+.. .
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~----~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~-~ 81 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG----NKPRLLILNKSDLADPEVTKKWIEYFEEQG-I 81 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC----CCCEEEEEEchhcCCHHHHHHHHHHHHHcC-C
Confidence 37999999999999999999999999999999999988888764 689999999999998776788998886542 3
Q ss_pred eEEEeeccCCCChHHHHHHHHHHHHhhc--------CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE
Q 012726 275 LAFHASINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY 346 (457)
Q Consensus 275 ~~f~iSa~~~~Gi~~Li~~L~~~~~~~~--------~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~ 346 (457)
.++.+|+.++.|+..|++.|.++++... ....++|+++|+||||||||||+|++...+.+++.||+|+.+++
T Consensus 82 ~vi~vSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~ 161 (287)
T PRK09563 82 KALAINAKKGQGVKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW 161 (287)
T ss_pred eEEEEECCCcccHHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE
Confidence 4566799999999999999998887542 13568999999999999999999999999999999999999999
Q ss_pred EEcCCcEEEEecCCcccCCCCCc---cceEEEeccccC--CcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHH
Q 012726 347 ITLTKRIFLIDCPGVVYQNKDSE---TDIVLKGVVRVT--NLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQ 420 (457)
Q Consensus 347 ~~~~~~i~liDtPGi~~~~~~~e---~dlvL~gvv~~~--~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~ 420 (457)
+.++.+++|+||||++.+...++ ..+++.|++..+ ...++..++.+.|.+..+..|...|+++.+ ++.++||+.
T Consensus 162 ~~~~~~~~l~DtPGi~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~ll~~l~~~~~~~l~~~y~~~~~~~~~~~~l~~ 241 (287)
T PRK09563 162 IKLGKGLELLDTPGILWPKLEDQEVGLKLALTGAIKDEALDLEEVAIFALEYLSKHYPERLKERYKLDELPEDILELLEA 241 (287)
T ss_pred EEeCCcEEEEECCCcCCCCCCcHHHHHHHHHhCCcchhhcChHHHHHHHHHHHHhhCHHHHHHHhCCCCCCCCHHHHHHH
Confidence 99999999999999998875443 235667777644 335667788888888888899999999754 588999999
Q ss_pred HHHHcCCcccCCcccHHHHHHHHHHHHHhchhcCCC
Q 012726 421 LCKSTGKLLRVCLFLHFISWYLFFYDHITNLASVGH 456 (457)
Q Consensus 421 la~r~g~l~kgg~pD~~~aa~~~l~d~~~g~~~~~~ 456 (457)
+|+++|++.|||+||+++||++||+||++|++|--+
T Consensus 242 ~a~~~g~~~k~g~~D~~~aa~~~l~d~~~Gklg~~~ 277 (287)
T PRK09563 242 IARKRGALRKGGEIDYERASELLLNEFRNGKLGKIT 277 (287)
T ss_pred HHHHhCccccCCccCHHHHHHHHHHHHHcCCCCcEE
Confidence 999999999999999999999999999999998644
No 6
>COG1161 Predicted GTPases [General function prediction only]
Probab=100.00 E-value=3.4e-43 Score=355.83 Aligned_cols=272 Identities=33% Similarity=0.436 Sum_probs=221.7
Q ss_pred hhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhc
Q 012726 162 GSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC 241 (457)
Q Consensus 162 ~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~ 241 (457)
.|++|+...+++..+ .+ +|||...|+++.++++.+|+|++|+|||+|++++++.+++++.
T Consensus 1 ~~~~~~~~~~~~~i~----------------~~-~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--- 60 (322)
T COG1161 1 QCQRCFRLKHYNKIQ----------------WF-PGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--- 60 (322)
T ss_pred CchhhhHHHhccccc----------------CC-CCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc---
Confidence 389999998887743 12 6788999999999999999999999999999999999999986
Q ss_pred CCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHH--------HHHHHHHhhcCccceEEEEee
Q 012726 242 KHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLS--------VLRQFARLKSDKQAISVGFVG 313 (457)
Q Consensus 242 ~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~--------~L~~~~~~~~~~~~i~v~vvG 313 (457)
+++.++|+||+||+|...+..|.+++.+..+...+.+|+..+.+...+.. .+.++.+.......++|++||
T Consensus 61 -~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG 139 (322)
T COG1161 61 -EKPKLLVLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVG 139 (322)
T ss_pred -cCCcEEEEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHHHHHHHHHHHhhcCCCccceEEEEEc
Confidence 46779999999999999999999999998877777778888887777763 333333322234568999999
Q ss_pred cCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCCCccceEEEeccccCCcccHHHHHHHH
Q 012726 314 YPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDSETDIVLKGVVRVTNLEDAAEHIGEV 393 (457)
Q Consensus 314 ~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~~e~dlvL~gvv~~~~l~~~~~~i~~~ 393 (457)
+||||||||||+|+++..+.+|+.||+|+..|++.+...++|+||||++++..... +.++.+++..+.+.++..++..+
T Consensus 140 ~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~~~~~-~~v~~~l~~~~~Ik~~~~~~~~v 218 (322)
T COG1161 140 YPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPKFDDD-ELVLLKLAPKGEIKDPVLPADEV 218 (322)
T ss_pred CCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcCCCCccch-HHHhhccccccccCccccChHHH
Confidence 99999999999999999999999999999999999999999999999999987653 45556666666665554444433
Q ss_pred HHhcC-----cceehhhcCCCCCC-------CHHHHHHHHHHHcC-CcccCCcccHHHHHHHHHHHHHhchhcCC
Q 012726 394 LKRVK-----KEHLKRAYKIKDWV-------DENDFLLQLCKSTG-KLLRVCLFLHFISWYLFFYDHITNLASVG 455 (457)
Q Consensus 394 L~~~~-----~~~l~~~y~i~~~~-------~~~efL~~la~r~g-~l~kgg~pD~~~aa~~~l~d~~~g~~~~~ 455 (457)
..++. ...+...|.+..+. +.+++++.+|.++| ++.+||++|+.+||+.+++||+.|++|--
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~l~~~a~~rg~~l~~~g~~d~~~~~~~~~~d~~~gklg~~ 293 (322)
T COG1161 219 AERLLGGLLIDEHYGEKLNITRYESNPIHRTDPEEFLELIAKKRGWLLLKGGEPDLERAAETILKDIRNGKLGWF 293 (322)
T ss_pred HHHHHhhhhhhhhhhHhhCCcccccccccccCHHHHHHHHHHHhhhhhcCCCCccHHHHHHHHHHHHHhCCccee
Confidence 33332 23444445554222 67899999999999 88899999999999999999999998753
No 7
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=100.00 E-value=4.8e-43 Score=360.65 Aligned_cols=366 Identities=26% Similarity=0.364 Sum_probs=262.5
Q ss_pred CCCccccceeeechHHHHHHHHHHHhh------hcCCcEEEecCCCCCccccchhhhhhhccccccccchhhcCCCCCCC
Q 012726 71 PDRRWFGNTRCVNQKQLEFFREELQSH------MSSSYNVILREKKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRK 144 (457)
Q Consensus 71 p~~~wf~~~~~~~q~~l~~f~~~~~~~------~~~~~~~~~~~~~~p~~ll~~~~~~~~~~~~~~~~f~~~fg~~~~rk 144 (457)
++--|..=+.|..+++++.|+..-+.+ .+...++|-.....+.+. ......+.+- ..+...+ +..-.-.+
T Consensus 41 ~~~~~~~l~svt~~s~~d~~l~~ae~a~~~f~ae~~~~~~i~~~~~~~~~~--s~~ee~r~~q-~~ee~~~-~~~L~iPR 116 (562)
T KOG1424|consen 41 YEWGKLVLESVTEESDLDAFLGTAELAETEFTAEKSNETIIENEQRTGSLS--SATEEQRELQ-KQEEALN-ASRLDIPR 116 (562)
T ss_pred cccccceeeeeecccChHHhhhhhhhhhhhhhhhhccccccchhhcccccc--cHHHHhhhhh-hhhhhhh-cccccccC
Confidence 444455667799999999999854422 122333332222222111 0111111111 1111111 11112234
Q ss_pred CcCCC-cCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCC
Q 012726 145 RPKLL-ASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDAR 223 (457)
Q Consensus 145 ~~~~~-~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDar 223 (457)
||.|. ..+.|+|.....+..-.|.-.-..- .+.+++ .-++|++| ..+|+++|++++.+|+||+|||||
T Consensus 117 RP~W~~~~s~eeLd~~EkeaFlewrr~L~~L-----qe~e~l----~lTpFErN--LE~WRQLWRVlErSDivvqIVDAR 185 (562)
T KOG1424|consen 117 RPPWTLEMSKEELDRQEKEAFLEWRRKLASL-----QENEKL----VLTPFERN--LEIWRQLWRVLERSDIVVQIVDAR 185 (562)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-----hhcCCe----eechhhhC--HHHHHHHHHHHhhcceEEEEeecC
Confidence 55554 5678888766555444443321111 112222 13457778 899999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccC------C----------CCh
Q 012726 224 DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK------S----------FGK 287 (457)
Q Consensus 224 dp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~------~----------~Gi 287 (457)
+|+-.+|+.+++|+++..++|..+|++||+||++......|.+||...+-..+|. ||.. + .|.
T Consensus 186 nPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~-SA~~at~~~~~~~~~e~~r~~d~~ 264 (562)
T KOG1424|consen 186 NPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFF-SALAATEQLESKVLKEDRRSLDGV 264 (562)
T ss_pred CccccCChhHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEE-ecccccccccccchhhhhhcccch
Confidence 9999999999999998777899999999999999999999999998887433332 4332 1 011
Q ss_pred ------------HHHHHHHH-------HHHHh------------hcCccceEEEEeecCCCchHHHHHHHhCCCCceecC
Q 012726 288 ------------GSLLSVLR-------QFARL------------KSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAP 336 (457)
Q Consensus 288 ------------~~Li~~L~-------~~~~~------------~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~ 336 (457)
+.++.... +...+ ...+..++||+||||||||||+||+|.|.+...||.
T Consensus 265 ~~~~~~~~~~~~d~~i~r~~~d~~e~~~v~~~~~~s~~~~~~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~ 344 (562)
T KOG1424|consen 265 SRALGAIFVGEVDLKIARDKGDGEEIEDVEQLRLISAMEPTPTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSS 344 (562)
T ss_pred hhhccccccccchhhhhhhcccccchhhHHhhhhhhccccCCCCcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeec
Confidence 00111100 00000 011235899999999999999999999999999999
Q ss_pred CCCceeEEEEEEcCCcEEEEecCCcccCCCCC-ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC-----
Q 012726 337 IPGETKVWQYITLTKRIFLIDCPGVVYQNKDS-ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD----- 410 (457)
Q Consensus 337 ~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~~-e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~----- 410 (457)
.||.|+.+|.+.+...+.|.||||+++|+... ..+++|.||..++.+.++...+..+.+++..+.|..+|+..+
T Consensus 345 TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf~~~r~emvl~GiLPIDQmrd~~~~~~llaerIP~~~Le~~Y~~k~~e~~~ 424 (562)
T KOG1424|consen 345 TPGKTKHFQTIFLSPSVCLCDCPGLVFPSFSPTRAEMVLNGILPIDQLRDHYGAVGLLAERIPRHVLERLYGHKPREDPE 424 (562)
T ss_pred CCCCcceeEEEEcCCCceecCCCCccccCCCchHHHHHHhcCccHHHhhcccchHHHHHHhcCHHHHHHHhCCCcccccC
Confidence 99999999999999999999999999999875 788999999999999999999999999999999999996321
Q ss_pred ---CCCHHHHHHHHHHHcCCcccCCcccHHHHHHHHHHHHHhchh
Q 012726 411 ---WVDENDFLLQLCKSTGKLLRVCLFLHFISWYLFFYDHITNLA 452 (457)
Q Consensus 411 ---~~~~~efL~~la~r~g~l~kgg~pD~~~aa~~~l~d~~~g~~ 452 (457)
.....++|...|..+||+..+|.||..+|||.||.||..|++
T Consensus 425 ~~~pp~A~ell~a~a~~RGfmts~~~~D~~RAAr~ILKDyv~GKL 469 (562)
T KOG1424|consen 425 DSRPPSAAELLNAYAYKRGFMTSKGLPDEYRAARYILKDYVSGKL 469 (562)
T ss_pred CCCCchHHHHHHHHHHhcchhhhccCCcchHHHHHHHHHHhCCee
Confidence 124689999999999999999999999999999999999995
No 8
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=100.00 E-value=7.4e-33 Score=251.90 Aligned_cols=157 Identities=76% Similarity=1.308 Sum_probs=142.1
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
++|++++++|+|++|+|+++|+++.+..+++++.....++|+|+|+||+||++++....|+.++.+.++..++++||+++
T Consensus 1 ~~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~ 80 (157)
T cd01858 1 ELYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNP 80 (157)
T ss_pred ChhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 47889999999999999999999999999999986444699999999999998887888999998888776789999999
Q ss_pred CChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCc
Q 012726 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGV 361 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi 361 (457)
+|+++|++.|.+++........++|+++|.||||||||||+|.+...+.++++||+|+..+++.++..++|+||||+
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 99999999999887654444578899999999999999999999999999999999999999999888999999996
No 9
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=258.84 Aligned_cols=287 Identities=20% Similarity=0.219 Sum_probs=220.6
Q ss_pred hhhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHH
Q 012726 122 QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKR 201 (457)
Q Consensus 122 ~~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr 201 (457)
..|+|+.++..|+++-|++ -. -++|... -...|-|...+-.......+||.|+.....+.+. ..
T Consensus 9 VGRPNVGKSTLFNRL~g~r-----~A-IV~D~pG-----vTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~-----~~ 72 (444)
T COG1160 9 VGRPNVGKSTLFNRLTGRR-----IA-IVSDTPG-----VTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQ-----EL 72 (444)
T ss_pred ECCCCCcHHHHHHHHhCCe-----ee-EeecCCC-----CccCCccceeEEcCceEEEEECCCCCcCCchHHH-----HH
Confidence 4799999999999999843 11 1222221 1133445544433444557899998644333343 88
Q ss_pred HHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeec
Q 012726 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 202 ~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa 281 (457)
|.+++..+++.||+||+|+|++..++..+..+.++|+. .++|+|+|+||+|-...+ ....+++ +.+--..+++||
T Consensus 73 i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~--~~kpviLvvNK~D~~~~e--~~~~efy-slG~g~~~~ISA 147 (444)
T COG1160 73 IREQALIAIEEADVILFVVDGREGITPADEEIAKILRR--SKKPVILVVNKIDNLKAE--ELAYEFY-SLGFGEPVPISA 147 (444)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEEcccCchhh--hhHHHHH-hcCCCCceEeeh
Confidence 99999999999999999999999999999999999995 479999999999976322 1122333 333345678899
Q ss_pred cCCCChHHHHHHHHHHHH--hhcC----ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCc
Q 012726 282 NKSFGKGSLLSVLRQFAR--LKSD----KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKR 352 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~--~~~~----~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~ 352 (457)
.+|.|+++|++.+.+.++ +... ...++|++||.||||||||+|+|++...+.+++.||||++.....+ +.+
T Consensus 148 ~Hg~Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~ 227 (444)
T COG1160 148 EHGRGIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK 227 (444)
T ss_pred hhccCHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeE
Confidence 999999999999999973 1111 1469999999999999999999999999999999999998765544 568
Q ss_pred EEEEecCCcccCCCC----------------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC----
Q 012726 353 IFLIDCPGVVYQNKD----------------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV---- 412 (457)
Q Consensus 353 i~liDtPGi~~~~~~----------------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~---- 412 (457)
+.||||.|+.....- ..+++++..+++.+.+.+....+..+..+.++..+.+.|++|-.+
T Consensus 228 ~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~ 307 (444)
T COG1160 228 YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEA 307 (444)
T ss_pred EEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhh
Confidence 999999999876432 357889998889999999999999999999999999999999543
Q ss_pred CHHHHHHHHHHHcCCcc
Q 012726 413 DENDFLLQLCKSTGKLL 429 (457)
Q Consensus 413 ~~~efL~~la~r~g~l~ 429 (457)
..+++-+.+-++..++.
T Consensus 308 ~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 308 TMEEFKKKLRRKLPFLD 324 (444)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 24556677777777764
No 10
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.96 E-value=5.6e-29 Score=230.91 Aligned_cols=148 Identities=45% Similarity=0.817 Sum_probs=124.6
Q ss_pred CEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEee-------------
Q 012726 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS------------- 280 (457)
Q Consensus 214 DvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iS------------- 280 (457)
|+|++|+|||+|+++.++.+.+++.....++|+|+|+||+||++++.+..|++++.+.++...|..+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQSQKKNLGQKSV 80 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccccccchhhccc
Confidence 8999999999999999999998842112479999999999999999999999999888876665432
Q ss_pred -----------ccCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc
Q 012726 281 -----------INKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL 349 (457)
Q Consensus 281 -----------a~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~ 349 (457)
+.++.|.+.|++.++++.........++|+++|+||||||||||+|++...+.+++.||+|+..+++.+
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~ 160 (172)
T cd04178 81 KVEAASADLLRSSVCFGADCLLKLLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL 160 (172)
T ss_pred ccchhhhhhhhhccccCHHHHHHHHHHHhhccccccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe
Confidence 233445667777777765543334568999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecCCc
Q 012726 350 TKRIFLIDCPGV 361 (457)
Q Consensus 350 ~~~i~liDtPGi 361 (457)
+.+++|+||||+
T Consensus 161 ~~~~~l~DtPGi 172 (172)
T cd04178 161 DKKVKLLDSPGI 172 (172)
T ss_pred CCCEEEEECcCC
Confidence 889999999996
No 11
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.96 E-value=1.1e-28 Score=231.05 Aligned_cols=174 Identities=30% Similarity=0.392 Sum_probs=133.7
Q ss_pred hHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcC
Q 012726 163 SQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK 242 (457)
Q Consensus 163 ~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~ 242 (457)
|+|||++.||++......+.. ..+...+..+++++|+||+|+|++++..+....+... ..
T Consensus 1 C~rC~~l~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~~----~~ 60 (190)
T cd01855 1 CQRCFRLKHYNKIDPVEIPDE----------------DFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRLF----GG 60 (190)
T ss_pred CcchhhhhccCccccccCChH----------------HHHHHHHHhcccCCcEEEEEEECccCCCccchhHHHh----cC
Confidence 999999999998654322211 1134556677899999999999999887766655221 24
Q ss_pred CCcEEEEeecCCCCChhh----HHHHHHHH--Hhc-C-CeeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEeec
Q 012726 243 HKHMILLLNKCDLVPAWA----TKGWLRVL--SKE-Y-PSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGY 314 (457)
Q Consensus 243 ~K~vIlVLNKiDLvp~~~----~~~wl~~l--~~~-~-p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~ 314 (457)
++|+|+|+||+||++... ...|.+.+ ... . +..+|.+||++++|+++|++.|.++++ ....++++|.
T Consensus 61 ~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~-----~~~~~~~~G~ 135 (190)
T cd01855 61 NNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK-----KGGDVYVVGA 135 (190)
T ss_pred CCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh-----cCCcEEEEcC
Confidence 689999999999986543 23344111 111 1 234688899999999999999998875 3467999999
Q ss_pred CCCchHHHHHHHhCCCC--------ceecCCCCceeEEEEEEcCCcEEEEecCCc
Q 012726 315 PNVGKSSVINTLRTKNV--------CKVAPIPGETKVWQYITLTKRIFLIDCPGV 361 (457)
Q Consensus 315 pNvGKSSliN~L~~~~~--------~~vs~~pg~T~~~~~~~~~~~i~liDtPGi 361 (457)
||||||||||+|++... ..+++.||||++.+.+.++..+.||||||+
T Consensus 136 ~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 136 TNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred CCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 99999999999998543 467899999999999999878999999997
No 12
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.95 E-value=2.2e-27 Score=219.14 Aligned_cols=162 Identities=33% Similarity=0.493 Sum_probs=138.1
Q ss_pred ccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCee
Q 012726 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (457)
Q Consensus 196 ~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~ 275 (457)
+||++++++++++.++++|+||+|+|+++|+...+..+.+.+ .++|+|+|+||+||.+.+....|++++.... ..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~-~~ 77 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GNKPRIIVLNKADLADPKKTKKWLKYFESKG-EK 77 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cCCCEEEEEehhhcCChHHHHHHHHHHHhcC-Ce
Confidence 688999999999999999999999999999988776665554 2689999999999987766667887776544 34
Q ss_pred EEEeeccCCCChHHHHHHHHHHHHhh-------cCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE
Q 012726 276 AFHASINKSFGKGSLLSVLRQFARLK-------SDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT 348 (457)
Q Consensus 276 ~f~iSa~~~~Gi~~Li~~L~~~~~~~-------~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~ 348 (457)
++.+|+.++.|+++|.+.|.++++.. .....++++++|.||||||||+|+|++...+.+++.||+|+.++.+.
T Consensus 78 vi~iSa~~~~gi~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~ 157 (171)
T cd01856 78 VLFVNAKSGKGVKKLLKAAKKLLKDIEKLKAKGLLPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIK 157 (171)
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHhhhhhcccCCCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEE
Confidence 56789999999999999999876421 12335789999999999999999999998889999999999999988
Q ss_pred cCCcEEEEecCCcc
Q 012726 349 LTKRIFLIDCPGVV 362 (457)
Q Consensus 349 ~~~~i~liDtPGi~ 362 (457)
++..+.++||||++
T Consensus 158 ~~~~~~~iDtpG~~ 171 (171)
T cd01856 158 ISPGIYLLDTPGIL 171 (171)
T ss_pred ecCCEEEEECCCCC
Confidence 88889999999984
No 13
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.95 E-value=1.3e-27 Score=213.84 Aligned_cols=141 Identities=45% Similarity=0.692 Sum_probs=125.3
Q ss_pred HHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeec
Q 012726 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 202 ~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa 281 (457)
+|++++++++++|+||+|+|+++|.++.+..+.+++.....++|+|+|+||+||++++....|.+++.... ..++.+||
T Consensus 1 ~~~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~-~~ii~iSa 79 (141)
T cd01857 1 VWRQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEG-IVVVFFSA 79 (141)
T ss_pred CHHHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcC-CeEEEEEe
Confidence 37899999999999999999999999999999999876435799999999999998887778888887654 34667899
Q ss_pred cCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCc
Q 012726 282 NKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGV 361 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi 361 (457)
.++.+ +++++|.||||||||||+|++...+.++..||+|+..+.+.++.+++|+||||+
T Consensus 80 ~~~~~---------------------~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 138 (141)
T cd01857 80 LKENA---------------------TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGL 138 (141)
T ss_pred cCCCc---------------------EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCc
Confidence 87654 689999999999999999999998899999999999999999889999999999
Q ss_pred ccC
Q 012726 362 VYQ 364 (457)
Q Consensus 362 ~~~ 364 (457)
.+|
T Consensus 139 ~~p 141 (141)
T cd01857 139 VFP 141 (141)
T ss_pred CCC
Confidence 876
No 14
>PRK13796 GTPase YqeH; Provisional
Probab=99.95 E-value=1.2e-27 Score=246.44 Aligned_cols=176 Identities=31% Similarity=0.424 Sum_probs=139.8
Q ss_pred hhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccC-EEEEEeeCCCCCCCCCHHHHHHHHH
Q 012726 161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSD-VVVQVLDARDPQGTRCHHLERHLKE 239 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sD-vIL~VvDardp~~s~~~~l~k~L~~ 239 (457)
..|||||+++||++.+.+..+.++|. .+.+.+...| +|++|+|+.|+.++..+.+.+++.
T Consensus 35 ~~C~RC~~l~hy~~~~~~~~~~~~~~------------------~~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~~- 95 (365)
T PRK13796 35 VYCQRCFRLKHYNEIQDVSLTDDDFL------------------KLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVG- 95 (365)
T ss_pred eEchhhhhhhccCcccCCCCCHHHHH------------------HHHHhhcccCcEEEEEEECccCCCchhHHHHHHhC-
Confidence 35999999999999776555444442 2334455555 999999999999888777776653
Q ss_pred hcCCCcEEEEeecCCCCChh----hHHHHHHHHHhcCC---eeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEe
Q 012726 240 HCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFV 312 (457)
Q Consensus 240 ~~~~K~vIlVLNKiDLvp~~----~~~~wl~~l~~~~p---~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vv 312 (457)
++|+++|+||+||+++. ....|+..+.+... ..++.+||++++|+++|++.|.++. ....+++|
T Consensus 96 ---~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~------~~~~v~vv 166 (365)
T PRK13796 96 ---NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYR------EGRDVYVV 166 (365)
T ss_pred ---CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhc------CCCeEEEE
Confidence 68999999999998743 35668776655432 3567789999999999999998764 24579999
Q ss_pred ecCCCchHHHHHHHhCC-----CCceecCCCCceeEEEEEEcCCcEEEEecCCcccC
Q 012726 313 GYPNVGKSSVINTLRTK-----NVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQ 364 (457)
Q Consensus 313 G~pNvGKSSliN~L~~~-----~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~ 364 (457)
|+||||||||||+|++. ...++|+.||||++.+.+.++....|+||||+..+
T Consensus 167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~~~ 223 (365)
T PRK13796 167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGIIHR 223 (365)
T ss_pred cCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcccc
Confidence 99999999999999854 35678999999999999999888899999999754
No 15
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.95 E-value=3.1e-27 Score=243.03 Aligned_cols=179 Identities=30% Similarity=0.376 Sum_probs=142.0
Q ss_pred HhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH
Q 012726 160 ADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~ 239 (457)
...|||||+++||+..+.+..+.+.|. +.+......+|+|++|+|+.++.++..+.+.+++.
T Consensus 28 ~~~C~RC~~l~hy~~~~~~~~~~e~f~-----------------~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~~- 89 (360)
T TIGR03597 28 EVYCQRCFRLKHYNEIQDVELNDDDFL-----------------NLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVG- 89 (360)
T ss_pred CeeecchhhhhccCccccCCCCHHHHH-----------------HHHhhcccCCcEEEEEEECcCCCCCccHHHHHHhC-
Confidence 446999999999999766543333232 23334457889999999999999998888887763
Q ss_pred hcCCCcEEEEeecCCCCChh----hHHHHHHHHHhcCC---eeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEe
Q 012726 240 HCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFV 312 (457)
Q Consensus 240 ~~~~K~vIlVLNKiDLvp~~----~~~~wl~~l~~~~p---~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vv 312 (457)
++|+++|+||+||++++ ....|++.+.+... ..++.+||++++|+++|++.|.++. ....|++|
T Consensus 90 ---~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~------~~~~v~~v 160 (360)
T TIGR03597 90 ---GNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR------NKKDVYVV 160 (360)
T ss_pred ---CCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh------CCCeEEEE
Confidence 68999999999998754 34567654333322 3467789999999999999998763 23689999
Q ss_pred ecCCCchHHHHHHHhCCC-----CceecCCCCceeEEEEEEcCCcEEEEecCCcccCC
Q 012726 313 GYPNVGKSSVINTLRTKN-----VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 313 G~pNvGKSSliN~L~~~~-----~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~ 365 (457)
|.||||||||||+|++.. .+++|+.||+|+..+.+.++..+.|+||||+..+.
T Consensus 161 G~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~ 218 (360)
T TIGR03597 161 GVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSH 218 (360)
T ss_pred CCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChh
Confidence 999999999999999853 46899999999999999988889999999998653
No 16
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=99.95 E-value=9.8e-27 Score=228.60 Aligned_cols=257 Identities=23% Similarity=0.225 Sum_probs=192.8
Q ss_pred cccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCe
Q 012726 195 EKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS 274 (457)
Q Consensus 195 ~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~ 274 (457)
-+|||....+.+.+.+..+|+||+|.|||.|++++++.+.+++. .++.|+|+||+||++.......++++..+.-.
T Consensus 29 fpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~----~k~riiVlNK~DLad~~~~k~~iq~~~~~~~~ 104 (335)
T KOG2485|consen 29 FPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP----PKPRIIVLNKMDLADPKEQKKIIQYLEWQNLE 104 (335)
T ss_pred CchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC----CCceEEEEecccccCchhhhHHHHHHHhhccc
Confidence 37889999999999999999999999999999999999998875 68999999999999976667777777765321
Q ss_pred -eEEE-eeccCCCChHHHHHHHHHHHHh----hc-CccceEEEEeecCCCchHHHHHHHhC-----CCCceecCCCCcee
Q 012726 275 -LAFH-ASINKSFGKGSLLSVLRQFARL----KS-DKQAISVGFVGYPNVGKSSVINTLRT-----KNVCKVAPIPGETK 342 (457)
Q Consensus 275 -~~f~-iSa~~~~Gi~~Li~~L~~~~~~----~~-~~~~i~v~vvG~pNvGKSSliN~L~~-----~~~~~vs~~pg~T~ 342 (457)
.++. ++.....++..++..+..+..+ .. ......|+|||.||||||||||++.. .+.+.|++.||+|+
T Consensus 105 ~~~~~~c~~~~~~~v~~l~~il~~~~~~l~r~irt~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~ 184 (335)
T KOG2485|consen 105 SYIKLDCNKDCNKQVSPLLKILTILSEELVRFIRTLNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTR 184 (335)
T ss_pred chhhhhhhhhhhhccccHHHHHHHHHHHHHHhhcccCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCcee
Confidence 1111 1222223344555444333221 11 23578899999999999999999863 46678999999999
Q ss_pred EEEE-EEc--CCcEEEEecCCcccCCCCCc---cceEEEeccccCCc--ccHHHHHHHHHHhcCcceehhhcCCC--CCC
Q 012726 343 VWQY-ITL--TKRIFLIDCPGVVYQNKDSE---TDIVLKGVVRVTNL--EDAAEHIGEVLKRVKKEHLKRAYKIK--DWV 412 (457)
Q Consensus 343 ~~~~-~~~--~~~i~liDtPGi~~~~~~~e---~dlvL~gvv~~~~l--~~~~~~i~~~L~~~~~~~l~~~y~i~--~~~ 412 (457)
.... +.+ ...++++||||+..|+..+. ..+.|.|++....+ ....+|++++|++.........++.. +..
T Consensus 185 ~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~~lKLAL~g~Vkd~~V~~~~~adylL~~lN~~~~~~y~~~l~~~~~~~d 264 (335)
T KOG2485|consen 185 RVSERIRISHRPPVYLIDTPGILVPSIVDVEDGLKLALCGLVKDHLVGEETIADYLLYLLNSHSDFSYVKDLKPGSTPAD 264 (335)
T ss_pred eehhheEeccCCceEEecCCCcCCCCCCCHHHhhhhhhcccccccccCHHHHHHHHHHHHhccCcchhHHHhccCCCccc
Confidence 8754 444 45699999999999976543 34677777765443 23468889999999988888777765 356
Q ss_pred CHHHHHHHHHHHcCCccc-----CC------cccHHHHHHHHHHHHHhchhcCC
Q 012726 413 DENDFLLQLCKSTGKLLR-----VC------LFLHFISWYLFFYDHITNLASVG 455 (457)
Q Consensus 413 ~~~efL~~la~r~g~l~k-----gg------~pD~~~aa~~~l~d~~~g~~~~~ 455 (457)
|.+.-+..++.++.+-.+ |. .|.+-.+|+.++.-|++|..|.-
T Consensus 265 d~~~nl~~l~v~~~~~~k~s~fdg~~~~ei~~~~~ln~~e~~l~~~rsg~l~~~ 318 (335)
T KOG2485|consen 265 DIEQNLAVLAVRRTKNEKVSAFDGNNKLEIEQPNLLNLARFFLATFRSGLLGPE 318 (335)
T ss_pred cHHHHHHHHHHHHHhcceeeEecCCceeEEechHHHHHHHHHHHHHHhccccce
Confidence 778888999998887665 22 23467899999999999998743
No 17
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.95 E-value=9.1e-27 Score=211.54 Aligned_cols=146 Identities=45% Similarity=0.690 Sum_probs=124.8
Q ss_pred CEEEEEeeCCCCCCCCCHHHH-HHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHH
Q 012726 214 DVVVQVLDARDPQGTRCHHLE-RHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLS 292 (457)
Q Consensus 214 DvIL~VvDardp~~s~~~~l~-k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~ 292 (457)
|+||+|+|+++|.++.+..++ ..+.. .++|+|+|+||+||++++....|+.++.+..+..++++||.++.|+++|.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKE--KGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhc--CCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHH
Confidence 899999999999999988877 34443 479999999999999887777898777666666678899999999999999
Q ss_pred HHHHHHHhh--------cCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCc
Q 012726 293 VLRQFARLK--------SDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGV 361 (457)
Q Consensus 293 ~L~~~~~~~--------~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi 361 (457)
.|.+..... ......+++++|+||||||||||+|++...+.+++.||+|+.++++.++..++|+||||+
T Consensus 79 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~ 155 (155)
T cd01849 79 AFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI 155 (155)
T ss_pred HHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence 886543211 123568899999999999999999999998899999999999999999889999999996
No 18
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.93 E-value=3.9e-25 Score=200.41 Aligned_cols=155 Identities=39% Similarity=0.638 Sum_probs=127.9
Q ss_pred HHHHHHHhhh-ccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEee
Q 012726 202 IWGELYKVID-SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 202 ~~~el~k~I~-~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iS 280 (457)
||+++.+.+. ++|+||+|+|+++|....+..+.+++.. .++|+|+|+||+|+++......|..+.. .....++.+|
T Consensus 1 ~~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iS 77 (156)
T cd01859 1 MWKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKE-SEGIPVVYVS 77 (156)
T ss_pred CHHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHH-hCCCcEEEEE
Confidence 4667776664 5999999999999988888777776653 3799999999999987655556653322 2333467789
Q ss_pred ccCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCC
Q 012726 281 INKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPG 360 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPG 360 (457)
|+++.|+++|.+.|.++++.. ....+++++|.|||||||++|.|.+.....+++.+|+|+..+++.++..+.|+||||
T Consensus 78 a~~~~gi~~L~~~l~~~~~~~--~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 78 AKERLGTKILRRTIKELAKID--GKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred ccccccHHHHHHHHHHHHhhc--CCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 999999999999999988742 346788999999999999999999988888999999999999888888899999999
Q ss_pred c
Q 012726 361 V 361 (457)
Q Consensus 361 i 361 (457)
+
T Consensus 156 i 156 (156)
T cd01859 156 V 156 (156)
T ss_pred C
Confidence 6
No 19
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1.5e-21 Score=205.12 Aligned_cols=240 Identities=21% Similarity=0.226 Sum_probs=173.6
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|++|+... ... -...+..++..++..+|+||+|+|+++++...+..+.++++.. ++|+|+|+||+|
T Consensus 49 ~~~~liDT~G~~~~-~~~-----~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~--~~piilv~NK~D 120 (435)
T PRK00093 49 REFILIDTGGIEPD-DDG-----FEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKS--NKPVILVVNKVD 120 (435)
T ss_pred cEEEEEECCCCCCc-chh-----HHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCcEEEEEECcc
Confidence 34557899998641 111 1255667777889999999999999998877777788888763 799999999999
Q ss_pred CCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhhc----CccceEEEEeecCCCchHHHHHHHhCCC
Q 012726 255 LVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~----~~~~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+...+. ...+++. ......+.+||.++.|+++|++.|.+..+... ....++|+++|.||||||||+|+|++..
T Consensus 121 ~~~~~~--~~~~~~~-lg~~~~~~iSa~~g~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~ 197 (435)
T PRK00093 121 GPDEEA--DAYEFYS-LGLGEPYPISAEHGRGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEE 197 (435)
T ss_pred Cccchh--hHHHHHh-cCCCCCEEEEeeCCCCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 765321 1222222 22223577899999999999999876433211 2357999999999999999999999998
Q ss_pred CceecCCCCceeEEEEEE---cCCcEEEEecCCcccCCCC----------------CccceEEEeccccCCcccHHHHHH
Q 012726 331 VCKVAPIPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD----------------SETDIVLKGVVRVTNLEDAAEHIG 391 (457)
Q Consensus 331 ~~~vs~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~----------------~e~dlvL~gvv~~~~l~~~~~~i~ 391 (457)
...+++.||+|++..... -+..+.|+||||+...... ..+|+++..++..+.+......+.
T Consensus 198 ~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~ 277 (435)
T PRK00093 198 RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIA 277 (435)
T ss_pred ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH
Confidence 888999999999865433 2457999999998654211 246888887777766766666667
Q ss_pred HHHHhcCcceehhhcCCCCCCC--HHHHHHHHHHHc
Q 012726 392 EVLKRVKKEHLKRAYKIKDWVD--ENDFLLQLCKST 425 (457)
Q Consensus 392 ~~L~~~~~~~l~~~y~i~~~~~--~~efL~~la~r~ 425 (457)
..+.+.+++.+...|++|.... ..++.+.++...
T Consensus 278 ~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l 313 (435)
T PRK00093 278 GLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRL 313 (435)
T ss_pred HHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhc
Confidence 7777778899999999986422 234555555443
No 20
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=6.3e-22 Score=207.40 Aligned_cols=241 Identities=22% Similarity=0.261 Sum_probs=177.2
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.||+|+... ...-...+.+++..++..+|+||+|+|+++++...+..+.+++++ .++|+++|+||+|+
T Consensus 48 ~~~liDTpG~~~~------~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~--~~~piilVvNK~D~ 119 (429)
T TIGR03594 48 EFILIDTGGIEED------DDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRK--SGKPVILVANKIDG 119 (429)
T ss_pred EEEEEECCCCCCc------chhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH--hCCCEEEEEECccC
Confidence 3456899997421 111226677888889999999999999999888777788888876 37999999999999
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhhc-----CccceEEEEeecCCCchHHHHHHHhCCC
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKS-----DKQAISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~-----~~~~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
....... .+ +.+......|.+||.++.|+++|++.+.+.++... ....++|+++|.||||||||+|+|++..
T Consensus 120 ~~~~~~~--~~-~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 120 KKEDAVA--AE-FYSLGFGEPIPISAEHGRGIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred CcccccH--HH-HHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 7654221 12 22222234678899999999999999988775422 1345899999999999999999999988
Q ss_pred CceecCCCCceeEEEEEE---cCCcEEEEecCCcccCCCC----------------CccceEEEeccccCCcccHHHHHH
Q 012726 331 VCKVAPIPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD----------------SETDIVLKGVVRVTNLEDAAEHIG 391 (457)
Q Consensus 331 ~~~vs~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~----------------~e~dlvL~gvv~~~~l~~~~~~i~ 391 (457)
.+.+++.||+|++..... -+..+.|+||||+...... ..+|+++..++..+.++.....+.
T Consensus 197 ~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~ 276 (429)
T TIGR03594 197 RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIA 276 (429)
T ss_pred eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 888999999998754332 2457999999998643211 356888887777777766666666
Q ss_pred HHHHhcCcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 392 EVLKRVKKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 392 ~~L~~~~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
..+...+.+.+.+.||+|-.++ .+++...+......
T Consensus 277 ~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 315 (429)
T TIGR03594 277 GLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPF 315 (429)
T ss_pred HHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhccc
Confidence 6666667899999999985422 23455555555443
No 21
>PRK12289 GTPase RsgA; Reviewed
Probab=99.88 E-value=3.2e-22 Score=204.74 Aligned_cols=146 Identities=26% Similarity=0.340 Sum_probs=120.5
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
.+.++|+|++|+|+.+|.. ....++++|.. ...+.|+|+|+||+||++......|.+.+.... ..+|.+||.++.|+
T Consensus 86 ~~aNvD~vLlV~d~~~p~~-~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g-~~v~~iSA~tg~GI 163 (352)
T PRK12289 86 PVANADQILLVFALAEPPL-DPWQLSRFLVKAESTGLEIVLCLNKADLVSPTEQQQWQDRLQQWG-YQPLFISVETGIGL 163 (352)
T ss_pred hhhcCCEEEEEEECCCCCC-CHHHHHHHHHHHHHCCCCEEEEEEchhcCChHHHHHHHHHHHhcC-CeEEEEEcCCCCCH
Confidence 5889999999999987653 23466777764 235899999999999998776788888775532 35677899999999
Q ss_pred HHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-------ceeEEEEEEcCCcEEEEecCC
Q 012726 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-------ETKVWQYITLTKRIFLIDCPG 360 (457)
Q Consensus 288 ~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-------~T~~~~~~~~~~~i~liDtPG 360 (457)
++|++.|.. ..++|+|.||||||||||+|++.....+++++| ||+..+.+.++...+|+||||
T Consensus 164 ~eL~~~L~~----------ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG 233 (352)
T PRK12289 164 EALLEQLRN----------KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPG 233 (352)
T ss_pred HHHhhhhcc----------ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCC
Confidence 998888742 237999999999999999999998889999998 899999999977779999999
Q ss_pred cccCCC
Q 012726 361 VVYQNK 366 (457)
Q Consensus 361 i~~~~~ 366 (457)
|..+..
T Consensus 234 ~~~~~l 239 (352)
T PRK12289 234 FNQPDL 239 (352)
T ss_pred cccccc
Confidence 987653
No 22
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=3.5e-21 Score=204.85 Aligned_cols=267 Identities=18% Similarity=0.132 Sum_probs=178.4
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
+++++.++..|+.+.|....--.+ ....+. .+.+.....+.....+.|++|+..... +....+
T Consensus 45 G~~nvGKSSL~nrl~~~~~~~v~~-~~gvT~----------d~~~~~~~~~~~~~~l~DT~G~~~~~~------~~~~~~ 107 (472)
T PRK03003 45 GRPNVGKSTLVNRILGRREAVVED-VPGVTR----------DRVSYDAEWNGRRFTVVDTGGWEPDAK------GLQASV 107 (472)
T ss_pred cCCCCCHHHHHHHHhCcCcccccC-CCCCCE----------eeEEEEEEECCcEEEEEeCCCcCCcch------hHHHHH
Confidence 577888888888887743110000 000010 111111111222345689999752111 112456
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..++..++..+|+||+|+|++++.+..+..+.+++.. .++|+|+|+||+|+..... ...+.+...+. ..+++||.
T Consensus 108 ~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~-~~~~iSA~ 182 (472)
T PRK03003 108 AEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGLG-EPHPVSAL 182 (472)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCCC-CeEEEEcC
Confidence 6777788999999999999999877666777777765 4799999999999964321 11222222222 34689999
Q ss_pred CCCChHHHHHHHHHHHHhhc-----CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CCcEE
Q 012726 283 KSFGKGSLLSVLRQFARLKS-----DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TKRIF 354 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~-----~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~~i~ 354 (457)
+|.|+++|++.|.+.++... ....++|+++|.||||||||+|+|++.....+++.||+|++... +.. +..+.
T Consensus 183 ~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~ 262 (472)
T PRK03003 183 HGRGVGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWR 262 (472)
T ss_pred CCCCcHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEE
Confidence 99999999999987775421 13468999999999999999999999887788999999987542 222 45789
Q ss_pred EEecCCcccCCC----------------CCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 355 LIDCPGVVYQNK----------------DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 355 liDtPGi~~~~~----------------~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
|+||||+..... -..+|+++..++..+..+.....+...+...+.+.+.+.||+|-.
T Consensus 263 l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~ 335 (472)
T PRK03003 263 FVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLV 335 (472)
T ss_pred EEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 999999843210 025678887666666555444455555556678899999999854
No 23
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.87 E-value=7e-21 Score=211.72 Aligned_cols=225 Identities=19% Similarity=0.162 Sum_probs=163.2
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|++|+.... .+....+.+++..++..+|+||+|+|+++.+...+..+.++|.. .++|+|+|+||+|+
T Consensus 324 ~~~liDT~G~~~~~------~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~--~~~pvIlV~NK~D~ 395 (712)
T PRK09518 324 DFKLVDTGGWEADV------EGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRR--AGKPVVLAVNKIDD 395 (712)
T ss_pred EEEEEeCCCcCCCC------ccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEECccc
Confidence 34567888875211 11225677888889999999999999998877777777777765 48999999999998
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhhcC-------ccceEEEEeecCCCchHHHHHHHhC
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSD-------KQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~-------~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
...... ..+++...+. ..|++||.++.|+++|++.|.+.++.... ...++|+++|.||||||||+|+|++
T Consensus 396 ~~~~~~--~~~~~~lg~~-~~~~iSA~~g~GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~ 472 (712)
T PRK09518 396 QASEYD--AAEFWKLGLG-EPYPISAMHGRGVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTH 472 (712)
T ss_pred ccchhh--HHHHHHcCCC-CeEEEECCCCCCchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 654211 1222222222 34688999999999999998877654211 2347999999999999999999999
Q ss_pred CCCceecCCCCceeEEEEE---EcCCcEEEEecCCcccCCC----------------CCccceEEEeccccCCcccHHHH
Q 012726 329 KNVCKVAPIPGETKVWQYI---TLTKRIFLIDCPGVVYQNK----------------DSETDIVLKGVVRVTNLEDAAEH 389 (457)
Q Consensus 329 ~~~~~vs~~pg~T~~~~~~---~~~~~i~liDtPGi~~~~~----------------~~e~dlvL~gvv~~~~l~~~~~~ 389 (457)
.....+++.||+|++.... .-+..+.|+||||+..... -..+|+++..++..+.++.....
T Consensus 473 ~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~ 552 (712)
T PRK09518 473 EERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDASQPISEQDLK 552 (712)
T ss_pred ccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHH
Confidence 9887889999999876432 2245788999999853211 03467888766666665554445
Q ss_pred HHHHHHhcCcceehhhcCCCCC
Q 012726 390 IGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 390 i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+...+...+++.+.+.||+|-.
T Consensus 553 i~~~~~~~~~piIiV~NK~DL~ 574 (712)
T PRK09518 553 VMSMAVDAGRALVLVFNKWDLM 574 (712)
T ss_pred HHHHHHHcCCCEEEEEEchhcC
Confidence 5555566678999999999853
No 24
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.85 E-value=1.4e-20 Score=184.06 Aligned_cols=144 Identities=25% Similarity=0.281 Sum_probs=113.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFG 286 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~~G 286 (457)
.+.++|.++.|.|+.+|..+. ..+.+++.. ...+.|+++|+||+||.+... ...|.+.+.+ ....+|.+||+++.|
T Consensus 33 ~~~n~D~viiV~d~~~p~~s~-~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~-~g~~v~~~SAktg~g 110 (245)
T TIGR00157 33 IVANIDQIVIVSSAVLPELSL-NQLDRFLVVAEAQNIEPIIVLNKIDLLDDEDMEKEQLDIYRN-IGYQVLMTSSKNQDG 110 (245)
T ss_pred ccccCCEEEEEEECCCCCCCH-HHHHHHHHHHHHCCCCEEEEEECcccCCCHHHHHHHHHHHHH-CCCeEEEEecCCchh
Confidence 578999999999999888654 346677653 235799999999999986443 3467777755 334567889999999
Q ss_pred hHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-------ceeEEEEEEcCCcEEEEecC
Q 012726 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-------ETKVWQYITLTKRIFLIDCP 359 (457)
Q Consensus 287 i~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-------~T~~~~~~~~~~~i~liDtP 359 (457)
+++|.+.|.+ ..++++|.||||||||||+|++.....++.+++ ||+..+.+.+ ...+|+|||
T Consensus 111 i~eLf~~l~~----------~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtP 179 (245)
T TIGR00157 111 LKELIEALQN----------RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTP 179 (245)
T ss_pred HHHHHhhhcC----------CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CCcEEEeCC
Confidence 9998877642 357999999999999999999987766666543 8999999888 466999999
Q ss_pred CcccCC
Q 012726 360 GVVYQN 365 (457)
Q Consensus 360 Gi~~~~ 365 (457)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 998765
No 25
>PRK12288 GTPase RsgA; Reviewed
Probab=99.82 E-value=1.8e-19 Score=184.40 Aligned_cols=144 Identities=24% Similarity=0.218 Sum_probs=112.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChh---hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~---~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
++.++|.++.|.+.. |..+ ...++++|.. ...+.|.++|+||+||++.. ....|.+.+... ...+|.+||.++
T Consensus 117 iaANvD~vlIV~s~~-p~~s-~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~-g~~v~~vSA~tg 193 (347)
T PRK12288 117 IAANIDQIVIVSAVL-PELS-LNIIDRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNI-GYRVLMVSSHTG 193 (347)
T ss_pred EEEEccEEEEEEeCC-CCCC-HHHHHHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhC-CCeEEEEeCCCC
Confidence 468999999888864 4322 2466777653 23578999999999998754 345666666443 345678899999
Q ss_pred CChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-------ceeEEEEEEcCCcEEEEe
Q 012726 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-------ETKVWQYITLTKRIFLID 357 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-------~T~~~~~~~~~~~i~liD 357 (457)
.|+++|.+.|.. ..++|+|.||||||||||+|++.....++.+++ ||+..+++.++....|+|
T Consensus 194 ~GideL~~~L~~----------ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liD 263 (347)
T PRK12288 194 EGLEELEAALTG----------RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGGDLID 263 (347)
T ss_pred cCHHHHHHHHhh----------CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCCEEEE
Confidence 999999888752 136899999999999999999998888888876 788999999987778999
Q ss_pred cCCcccCC
Q 012726 358 CPGVVYQN 365 (457)
Q Consensus 358 tPGi~~~~ 365 (457)
||||....
T Consensus 264 TPGir~~~ 271 (347)
T PRK12288 264 SPGVREFG 271 (347)
T ss_pred CCCCCccc
Confidence 99998654
No 26
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.81 E-value=3.5e-19 Score=178.04 Aligned_cols=145 Identities=23% Similarity=0.195 Sum_probs=111.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
++.++|++++|+|+.+|.. ....+++++.. ...++|+++|+||+||.+......|...+.. ....++.+|+.++.|+
T Consensus 75 i~anvD~vllV~d~~~p~~-s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-~g~~v~~vSA~~g~gi 152 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFF-NPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALA-LGYPVLAVSAKTGEGL 152 (287)
T ss_pred EEEeCCEEEEEEEcCCCCC-CHHHHHHHHHHHHHcCCCEEEEEEHHHCCChHHHHHHHHHHHh-CCCeEEEEECCCCccH
Confidence 5799999999999998872 23466777653 2357999999999999876544456555443 2245677899999999
Q ss_pred HHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCC-------CCceeEEEEEEcCCcEEEEecCC
Q 012726 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPI-------PGETKVWQYITLTKRIFLIDCPG 360 (457)
Q Consensus 288 ~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~-------pg~T~~~~~~~~~~~i~liDtPG 360 (457)
++|...|.. ..++++|.+|||||||||+|++.....++.+ +++|+..+.+.+....+|+||||
T Consensus 153 ~~L~~~L~~----------k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG 222 (287)
T cd01854 153 DELREYLKG----------KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPG 222 (287)
T ss_pred HHHHhhhcc----------ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCCEEEECCC
Confidence 888877642 4689999999999999999998766554433 35889999999876779999999
Q ss_pred cccCC
Q 012726 361 VVYQN 365 (457)
Q Consensus 361 i~~~~ 365 (457)
+....
T Consensus 223 ~~~~~ 227 (287)
T cd01854 223 FREFG 227 (287)
T ss_pred CCccC
Confidence 97543
No 27
>PRK00098 GTPase RsgA; Reviewed
Probab=99.81 E-value=3.9e-19 Score=178.66 Aligned_cols=145 Identities=24% Similarity=0.259 Sum_probs=112.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCC-hhhHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp-~~~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
.++.++|++++|+|+.+|... ...+++++.. ...++|+++|+||+||.+ ......|.+.+... ...++.+||.++.
T Consensus 76 ~iaaniD~vllV~d~~~p~~~-~~~idr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~-g~~v~~vSA~~g~ 153 (298)
T PRK00098 76 LIAANVDQAVLVFAAKEPDFS-TDLLDRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAI-GYDVLELSAKEGE 153 (298)
T ss_pred ceeecCCEEEEEEECCCCCCC-HHHHHHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHC-CCeEEEEeCCCCc
Confidence 357999999999999887543 2345566543 235789999999999973 34455677766443 2456788999999
Q ss_pred ChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-------ceeEEEEEEcCCcEEEEec
Q 012726 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-------ETKVWQYITLTKRIFLIDC 358 (457)
Q Consensus 286 Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-------~T~~~~~~~~~~~i~liDt 358 (457)
|+++|.+.|. +..++++|.||||||||||+|++.....++.+++ ||+..+.+.++...+|+||
T Consensus 154 gi~~L~~~l~----------gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~Dt 223 (298)
T PRK00098 154 GLDELKPLLA----------GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDT 223 (298)
T ss_pred cHHHHHhhcc----------CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCCCcEEEEC
Confidence 9998887763 3468999999999999999999988777777764 8888888888777899999
Q ss_pred CCcccC
Q 012726 359 PGVVYQ 364 (457)
Q Consensus 359 PGi~~~ 364 (457)
||+...
T Consensus 224 pG~~~~ 229 (298)
T PRK00098 224 PGFSSF 229 (298)
T ss_pred CCcCcc
Confidence 999853
No 28
>COG1162 Predicted GTPases [General function prediction only]
Probab=99.66 E-value=1.7e-15 Score=150.52 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=109.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHH--HHHHHHHhcCCeeEEEeeccCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATK--GWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~--~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
.+.++|-+++|+-+-+|..+ ...|+++|.. +..+...|+||||+||++.+... .+...+. .....++.+|++++.
T Consensus 76 ~v~n~d~~iiIvs~~~P~~~-~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~-~~gy~v~~~s~~~~~ 153 (301)
T COG1162 76 PVANNDQAIIVVSLVDPDFN-TNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAVKELLREYE-DIGYPVLFVSAKNGD 153 (301)
T ss_pred cccccceEEEEEeccCCCCC-HHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHHHHHHHHHH-hCCeeEEEecCcCcc
Confidence 34557888888888777543 3567787764 45688899999999999876554 3433333 334556667999999
Q ss_pred ChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCC-------CCceeEEEEEEcCCcEEEEec
Q 012726 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPI-------PGETKVWQYITLTKRIFLIDC 358 (457)
Q Consensus 286 Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~-------pg~T~~~~~~~~~~~i~liDt 358 (457)
|+++|.+.|. +-..+++|.+|||||||||+|.+.....++.+ -+||+....+.++..-+|+||
T Consensus 154 ~~~~l~~~l~----------~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDT 223 (301)
T COG1162 154 GLEELAELLA----------GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDT 223 (301)
T ss_pred cHHHHHHHhc----------CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeC
Confidence 9988887774 22578999999999999999998655554443 358899999999877899999
Q ss_pred CCcccCCC
Q 012726 359 PGVVYQNK 366 (457)
Q Consensus 359 PGi~~~~~ 366 (457)
|||.....
T Consensus 224 PGf~~~~l 231 (301)
T COG1162 224 PGFRSLGL 231 (301)
T ss_pred CCCCccCc
Confidence 99986543
No 29
>COG1159 Era GTPase [General function prediction only]
Probab=99.65 E-value=5.4e-16 Score=152.82 Aligned_cols=112 Identities=27% Similarity=0.342 Sum_probs=93.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE---EEEcCCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ---YITLTKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~---~~~~~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..-|++||.||||||||+|+|+|.+++.||+.|.||+... +..-+.++.++||||+..|... .+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~d 85 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKD 85 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhcc
Confidence 3458999999999999999999999999999999998643 2223568999999999998543 57
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCHHHH
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDF 417 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~ef 417 (457)
+|++|..+...+.+..-+..+.+.|+..+.+.+...++||...+...+
T Consensus 86 vDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l 133 (298)
T COG1159 86 VDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVL 133 (298)
T ss_pred CcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHH
Confidence 899999777777787778888888888778999999999977665533
No 30
>PRK01889 GTPase RsgA; Reviewed
Probab=99.64 E-value=1.2e-15 Score=156.96 Aligned_cols=144 Identities=22% Similarity=0.224 Sum_probs=104.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSFG 286 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~G 286 (457)
++.++|.|+.|+++..++. ...++++|.. +..+.+.++|+||+||++.. ....|+..+ .....+|.+|+.++.|
T Consensus 109 iaANvD~vliV~s~~p~~~--~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g 184 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFN--LRRIERYLALAWESGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG 184 (356)
T ss_pred EEEeCCEEEEEEecCCCCC--hhHHHHHHHHHHHcCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence 3689999999999953332 3467787764 34578889999999999752 122333333 1224567789999999
Q ss_pred hHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCC-------CceeEEEEEEcCCcEEEEecC
Q 012726 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP-------GETKVWQYITLTKRIFLIDCP 359 (457)
Q Consensus 287 i~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p-------g~T~~~~~~~~~~~i~liDtP 359 (457)
++.|.+.|. .+-.++++|.+|+|||||+|+|++.....++.++ .+|+..+.+.+....+|+|||
T Consensus 185 l~~L~~~L~---------~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dtp 255 (356)
T PRK01889 185 LDVLAAWLS---------GGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTP 255 (356)
T ss_pred HHHHHHHhh---------cCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCCC
Confidence 988887764 2457899999999999999999986655544432 356666677777677899999
Q ss_pred CcccCC
Q 012726 360 GVVYQN 365 (457)
Q Consensus 360 Gi~~~~ 365 (457)
|+....
T Consensus 256 G~~~~~ 261 (356)
T PRK01889 256 GMRELQ 261 (356)
T ss_pred chhhhc
Confidence 996543
No 31
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.61 E-value=2.5e-15 Score=137.22 Aligned_cols=100 Identities=27% Similarity=0.351 Sum_probs=75.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~e~ 370 (457)
|+|+++|.||||||||+|+|+|.+ ..++++||+|.+.....+ +..+.|+|+||+...... ...
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 579999999999999999999999 589999999998765333 468999999998765433 245
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
|+++..++. .++ +...++...|...+.+.+..++++|
T Consensus 80 D~ii~VvDa-~~l-~r~l~l~~ql~e~g~P~vvvlN~~D 116 (156)
T PF02421_consen 80 DLIIVVVDA-TNL-ERNLYLTLQLLELGIPVVVVLNKMD 116 (156)
T ss_dssp SEEEEEEEG-GGH-HHHHHHHHHHHHTTSSEEEEEETHH
T ss_pred CEEEEECCC-CCH-HHHHHHHHHHHHcCCCEEEEEeCHH
Confidence 777774444 455 4456777788888999999999997
No 32
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.61 E-value=1.8e-15 Score=156.58 Aligned_cols=105 Identities=33% Similarity=0.464 Sum_probs=93.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE---cCCcEEEEecCCcccCCCC--------------Cc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD--------------SE 369 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~--------------~e 369 (457)
..|++||.||||||||+|.|+++..+.|++.||+|+|..+.. .+..+.||||+|+...+.+ .+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999999987643 3668999999999875533 57
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+|++|+.++.-+.++..+..+..+|.+.+++.+.+.||+|..
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~ 125 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNL 125 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCc
Confidence 999999888888898999999999998889999999999964
No 33
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.53 E-value=3.1e-14 Score=147.78 Aligned_cols=105 Identities=27% Similarity=0.303 Sum_probs=84.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~------------- 367 (457)
+.+++++++|.||||||||+|+|+++..+.|+++||||||+....+ +-.+.|+||.|+......
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i 294 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI 294 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999999999865444 347899999999965432
Q ss_pred CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 368 SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
.++|++|..++..+.++.....+.+ +...+++.+.+.||.|
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~D 335 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKAD 335 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechh
Confidence 4789999988877765444444444 4455677888888887
No 34
>COG1159 Era GTPase [General function prediction only]
Probab=99.51 E-value=5.3e-14 Score=138.81 Aligned_cols=160 Identities=18% Similarity=0.171 Sum_probs=125.8
Q ss_pred hhhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHH
Q 012726 122 QARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKR 201 (457)
Q Consensus 122 ~~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr 201 (457)
.+|+|+.++..-+.+.|+|.---.++-.+ +. .+---....++.|.+|+||||+|.. ++.+. +.
T Consensus 12 iGrPNvGKSTLlN~l~G~KisIvS~k~QT-TR----------~~I~GI~t~~~~QiIfvDTPGih~p-k~~l~-----~~ 74 (298)
T COG1159 12 IGRPNVGKSTLLNALVGQKISIVSPKPQT-TR----------NRIRGIVTTDNAQIIFVDTPGIHKP-KHALG-----EL 74 (298)
T ss_pred EcCCCCcHHHHHHHHhcCceEeecCCcch-hh----------hheeEEEEcCCceEEEEeCCCCCCc-chHHH-----HH
Confidence 36888888888888989773221111000 00 0001123455889999999999965 55555 99
Q ss_pred HHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCC-eeEEEe
Q 012726 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP-SLAFHA 279 (457)
Q Consensus 202 ~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p-~~~f~i 279 (457)
|++.+++++.++|+||+|+|+..+++..+..+.+.|+. .+.|+|+++||+|+++.+. +....+++....+ ..+|++
T Consensus 75 m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpi 152 (298)
T COG1159 75 MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPI 152 (298)
T ss_pred HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEe
Confidence 99999999999999999999999999999999988876 3689999999999998776 5778888877766 578899
Q ss_pred eccCCCChHHHHHHHHHHHHh
Q 012726 280 SINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~~ 300 (457)
||+++.|++.|++.|..++|+
T Consensus 153 SA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 153 SALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred eccccCCHHHHHHHHHHhCCC
Confidence 999999999999999999986
No 35
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=127.91 Aligned_cols=123 Identities=22% Similarity=0.328 Sum_probs=95.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC----------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD---------------- 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~---------------- 367 (457)
...-|+|+|.+|||||||||+|++.+ .+.+|..||.|+...++.++..+.|+|.||+.+..-.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 45679999999999999999999965 6899999999999999999999999999999886532
Q ss_pred Cccce--EEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCH--HHHHHHHHHHcCC
Q 012726 368 SETDI--VLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDE--NDFLLQLCKSTGK 427 (457)
Q Consensus 368 ~e~dl--vL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~--~efL~~la~r~g~ 427 (457)
...++ +...++....+.+.+..+.++|...+.+.+..++++|.-... ...+..++...++
T Consensus 103 ~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~ 166 (200)
T COG0218 103 KRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKK 166 (200)
T ss_pred hchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcC
Confidence 11222 223233344455667788899999999999999999976643 3346666655543
No 36
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=6.1e-13 Score=114.41 Aligned_cols=99 Identities=33% Similarity=0.478 Sum_probs=70.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-CCcEEEEecCCcccCCCC--------------Ccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-TKRIFLIDCPGVVYQNKD--------------SET 370 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-~~~i~liDtPGi~~~~~~--------------~e~ 370 (457)
+|+++|.||+|||||||+|++...+.+++.|++|+...+. .+ +..+.|+||||+...... ..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 5899999999999999999998888999999999877442 33 456799999999865321 356
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYK 407 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~ 407 (457)
|+++..+.......+....+...|+ ..++.+.+++|
T Consensus 81 d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 7877755533322333445545554 55666666553
No 37
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.41 E-value=1.3e-12 Score=129.30 Aligned_cols=103 Identities=24% Similarity=0.301 Sum_probs=79.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE---EcCCcEEEEecCCcccCCCC-------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI---TLTKRIFLIDCPGVVYQNKD-------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~---~~~~~i~liDtPGi~~~~~~-------------~e~d 371 (457)
.|+++|.||||||||+|+|++.+.+.+++.|+||+..... ..+.++.++||||+..+... ..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999999998999999999864322 22347899999999764211 3678
Q ss_pred eEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 372 IVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+++..++..... .....+...+...+.+.+.+.|++|..
T Consensus 82 vvl~VvD~~~~~-~~~~~i~~~l~~~~~p~ilV~NK~Dl~ 120 (270)
T TIGR00436 82 LILFVVDSDQWN-GDGEFVLTKLQNLKRPVVLTRNKLDNK 120 (270)
T ss_pred EEEEEEECCCCC-chHHHHHHHHHhcCCCEEEEEECeeCC
Confidence 888866554433 333666777777888999999999864
No 38
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.35 E-value=3.9e-12 Score=126.88 Aligned_cols=105 Identities=29% Similarity=0.338 Sum_probs=79.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCCC-------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKDS------------- 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~~------------- 368 (457)
...+|.+.|+||||||||+++|++.+. .++++|.||+.....+.. .++++|||||+...+...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~Akp-EvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKP-EVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCC-ccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 467899999999999999999999987 999999999988776653 479999999999866441
Q ss_pred -ccceEEEeccccCC----cccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 369 -ETDIVLKGVVRVTN----LEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 369 -e~dlvL~gvv~~~~----l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
-.+++|+.++..+. ++.....+.++-...+.+.+.+.+++|-
T Consensus 246 hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~ 292 (346)
T COG1084 246 HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDI 292 (346)
T ss_pred HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 13677776666542 2222233334444456689999999984
No 39
>PRK00089 era GTPase Era; Reviewed
Probab=99.33 E-value=7.5e-12 Score=124.95 Aligned_cols=120 Identities=30% Similarity=0.344 Sum_probs=89.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--EcC-CcEEEEecCCcccCCCC-------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TLT-KRIFLIDCPGVVYQNKD-------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~~-~~i~liDtPGi~~~~~~-------------~e~ 370 (457)
..|+++|.||||||||+|+|++.+.+.+++.|++|+..... ..+ .++.++||||+..+... ..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 45899999999999999999999999999999999865432 222 47999999999765321 357
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCH---HHHHHHHHHHcC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDE---NDFLLQLCKSTG 426 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~---~efL~~la~r~g 426 (457)
|+++..+.....+......+...+...+.+.+.+.+++|...+. .++++.++...+
T Consensus 86 D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~ 144 (292)
T PRK00089 86 DLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMD 144 (292)
T ss_pred CEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCC
Confidence 88888666555566666777777777677899999999975443 345556655444
No 40
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=4.6e-12 Score=131.70 Aligned_cols=106 Identities=25% Similarity=0.360 Sum_probs=82.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~------------- 367 (457)
..++.|+++|.||||||||+|+|.......|+|+||||+|.....+ +..++|+||.|+.....+
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 4579999999999999999999999999999999999998765443 458999999999983322
Q ss_pred -CccceEEEeccccCCcccHHHHHHHHHHhcCc------------ceehhhcCCC
Q 012726 368 -SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK------------EHLKRAYKIK 409 (457)
Q Consensus 368 -~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~------------~~l~~~y~i~ 409 (457)
..+|+++..+.+.+........+..+|...+. +.+.+.|++|
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D 400 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSD 400 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhh
Confidence 25799999887766555555555666666542 4566677766
No 41
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=1.4e-11 Score=128.40 Aligned_cols=117 Identities=22% Similarity=0.315 Sum_probs=79.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc--C--CcEEEEecCCcccCCCC------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL--T--KRIFLIDCPGVVYQNKD------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~--~--~~i~liDtPGi~~~~~~------------~e~d 371 (457)
.|++||+||||||||||+|++.+. .++++|+||+......+ + ..+.|+||||+..+... ..++
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad 239 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR 239 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence 599999999999999999999876 89999999987665433 3 35999999999875432 3568
Q ss_pred eEEEeccccCCc--ccHH---HHHHHHHHhc-----CcceehhhcCCCCCCC--HHHHHHHHHHHcC
Q 012726 372 IVLKGVVRVTNL--EDAA---EHIGEVLKRV-----KKEHLKRAYKIKDWVD--ENDFLLQLCKSTG 426 (457)
Q Consensus 372 lvL~gvv~~~~l--~~~~---~~i~~~L~~~-----~~~~l~~~y~i~~~~~--~~efL~~la~r~g 426 (457)
+++..+. .... .++. ..+...|..+ .++.+.+.+++|.... ..+.+..++...+
T Consensus 240 vlL~VVD-~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~ 305 (390)
T PRK12298 240 VLLHLID-IAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALG 305 (390)
T ss_pred EEEEEec-cCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhC
Confidence 8887554 3211 1232 2333333332 4678889999996432 2244555555543
No 42
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.29 E-value=1.1e-11 Score=122.43 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=86.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~------------- 367 (457)
.+...|++||.||||||||+|.+.|.+++.++..+.||+......+. -+++|+||||++.+...
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~ 149 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNP 149 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCH
Confidence 35688999999999999999999999999999999999876654432 37999999999987643
Q ss_pred ----CccceEEEeccccCCcccHHHHHHHHHHhcC-cceehhhcCCCCCCCHHHHHHHHH
Q 012726 368 ----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVK-KEHLKRAYKIKDWVDENDFLLQLC 422 (457)
Q Consensus 368 ----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~~~~~efL~~la 422 (457)
..+|+++..++....-......++..|+++. .+.+.+.+++|....-..+|...+
T Consensus 150 ~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~ 209 (379)
T KOG1423|consen 150 RDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKD 209 (379)
T ss_pred HHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHH
Confidence 2467777655555322222334555666654 467888899986655555555444
No 43
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.28 E-value=3.4e-11 Score=111.46 Aligned_cols=108 Identities=23% Similarity=0.315 Sum_probs=82.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~--------------- 367 (457)
....+|+++|.+|+|||||+|+|++.. ...+++.+|+|.+..++..+.++.++||||+......
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l 95 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 95 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHHH
Confidence 457899999999999999999999975 6678899999998887766678999999998543211
Q ss_pred ---CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
...+.++..+.....+......+..++...+.+.+...+++|..
T Consensus 96 ~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~ 142 (179)
T TIGR03598 96 EKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKL 142 (179)
T ss_pred HhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 12356666555444565555566667777788899999999854
No 44
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.26 E-value=1.4e-11 Score=113.03 Aligned_cols=93 Identities=26% Similarity=0.275 Sum_probs=64.9
Q ss_pred HHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCC----
Q 012726 262 KGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPI---- 337 (457)
Q Consensus 262 ~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~---- 337 (457)
+.|++.+.+.. ..++.+|+.++.|+++|.+.|+ .-.++|+|.+|||||||||+|.+.....++.+
T Consensus 2 ~~~~~~y~~~g-y~v~~~S~~~~~g~~~l~~~l~----------~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~ 70 (161)
T PF03193_consen 2 EELLEQYEKLG-YPVFFISAKTGEGIEELKELLK----------GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKT 70 (161)
T ss_dssp HHHHHHHHHTT-SEEEE-BTTTTTTHHHHHHHHT----------TSEEEEECSTTSSHHHHHHHHHTSS----S------
T ss_pred HHHHHHHHHcC-CcEEEEeCCCCcCHHHHHHHhc----------CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhccc
Confidence 45677676653 3456679999999988887764 25689999999999999999999755444333
Q ss_pred ---CCceeEEEEEEcCCcEEEEecCCcccCC
Q 012726 338 ---PGETKVWQYITLTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 338 ---pg~T~~~~~~~~~~~i~liDtPGi~~~~ 365 (457)
-+||+..+.+.++...+||||||+....
T Consensus 71 ~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 71 GRGKHTTTHRELFPLPDGGYIIDTPGFRSFG 101 (161)
T ss_dssp --------SEEEEEETTSEEEECSHHHHT--
T ss_pred CCCcccCCCeeEEecCCCcEEEECCCCCccc
Confidence 3477888888998899999999998654
No 45
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.26 E-value=3.7e-11 Score=129.78 Aligned_cols=102 Identities=28% Similarity=0.370 Sum_probs=80.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..+|+++|.||||||||+|+|+|... .|+++||+|-+.....+ +..+.++|.||+..-... ..
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q-~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQ-KVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCc-eecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 45699999999999999999999876 99999999977655443 557999999999875422 23
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
.|+++. |++..++ +-..|+.-.|...+.+.+..+|.+|.
T Consensus 82 ~D~ivn-VvDAtnL-eRnLyltlQLlE~g~p~ilaLNm~D~ 120 (653)
T COG0370 82 PDLIVN-VVDATNL-ERNLYLTLQLLELGIPMILALNMIDE 120 (653)
T ss_pred CCEEEE-EcccchH-HHHHHHHHHHHHcCCCeEEEeccHhh
Confidence 477776 5555566 44567777788888899999999984
No 46
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.25 E-value=1.5e-11 Score=129.05 Aligned_cols=104 Identities=32% Similarity=0.389 Sum_probs=84.6
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE---cCCcEEEEecCCcccCCCC-------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD-------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~-------------~e~d 371 (457)
+|++||.||||||||+|.|++...+.+++.||+|++.++.. .+..+.|+||||+...... .++|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 48999999999999999999998888999999999876543 2457999999998532211 4678
Q ss_pred eEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 372 IVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+++..++..+.+......+..+|++.+++.+.+.|++|..
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~ 120 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGK 120 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCC
Confidence 8998777777676666778888988899999999999853
No 47
>PRK15494 era GTPase Era; Provisional
Probab=99.25 E-value=4.5e-11 Score=122.41 Aligned_cols=107 Identities=25% Similarity=0.362 Sum_probs=80.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CCcEEEEecCCcccCCCC-------------C
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TKRIFLIDCPGVVYQNKD-------------S 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~~i~liDtPGi~~~~~~-------------~ 368 (457)
+..+|+++|.||||||||+|+|++.+.+.+++.|++|++... +.. +.++.++||||+..+... .
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~ 130 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLH 130 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhh
Confidence 457899999999999999999999998889999999986543 222 457999999999643211 3
Q ss_pred ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 369 ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
.+|+++..+...+.+.+....+...+...+.+.+.+.|++|-.
T Consensus 131 ~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~ 173 (339)
T PRK15494 131 SADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIE 173 (339)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCc
Confidence 6788888666655565555555666666666677788999853
No 48
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.22 E-value=6.2e-11 Score=111.59 Aligned_cols=104 Identities=22% Similarity=0.255 Sum_probs=72.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecC-CCCceeEEEEEE---cCCcEEEEecCCcccCCCC---------------
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAP-IPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~-~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~--------------- 367 (457)
++|+++|.||||||||+|+|++.....++. .+|+|+..+... -+.++.||||||+......
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 468999999999999999999988766553 568888765432 3568999999999876421
Q ss_pred -CccceEEEeccccCCcccHHHHHHHHHHhc-C----cceehhhcCCCCC
Q 012726 368 -SETDIVLKGVVRVTNLEDAAEHIGEVLKRV-K----KEHLKRAYKIKDW 411 (457)
Q Consensus 368 -~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~-~----~~~l~~~y~i~~~ 411 (457)
...+++|. |++...++.....+.+.+... + ++.+..+.+.|..
T Consensus 81 ~~g~~~ill-Vi~~~~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l 129 (196)
T cd01852 81 APGPHAFLL-VVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDL 129 (196)
T ss_pred CCCCEEEEE-EEECCCcCHHHHHHHHHHHHHhChHhHhcEEEEEECcccc
Confidence 23466666 445555666555666555543 3 3455666666643
No 49
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.20 E-value=1.9e-10 Score=107.05 Aligned_cols=109 Identities=24% Similarity=0.341 Sum_probs=79.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~--------------- 367 (457)
...++|+++|.+|||||||||+|++.. .+.+++.+|+|+...++..+.++.|+||||+......
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYL 101 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHH
Confidence 356789999999999999999999975 6788899999998887777778999999997532111
Q ss_pred ---CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
...++++..+............+...+...+.+.+...+++|...
T Consensus 102 ~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~ 149 (196)
T PRK00454 102 RTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLK 149 (196)
T ss_pred HhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCC
Confidence 122345443333333444444566677777777888889998654
No 50
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.17 E-value=1.7e-10 Score=121.20 Aligned_cols=117 Identities=23% Similarity=0.352 Sum_probs=79.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc----CCcEEEEecCCcccCCCC------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL----TKRIFLIDCPGVVYQNKD------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~----~~~i~liDtPGi~~~~~~------------~e~d 371 (457)
.|++||+||||||||||+|++.+. .++++|++|.......+ +..+.|+||||+...... ..++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~-kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~ 238 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP-KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTR 238 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC-ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCC
Confidence 699999999999999999999875 68999999987765433 457999999999764322 2467
Q ss_pred eEEEeccccCC-cccHHH---HHHHHHHh-----cCcceehhhcCCCCCCCHHHHHHHHHHHcC
Q 012726 372 IVLKGVVRVTN-LEDAAE---HIGEVLKR-----VKKEHLKRAYKIKDWVDENDFLLQLCKSTG 426 (457)
Q Consensus 372 lvL~gvv~~~~-l~~~~~---~i~~~L~~-----~~~~~l~~~y~i~~~~~~~efL~~la~r~g 426 (457)
++++.++.... -.+|.. .+...|.. ..++.+.+.+|+|- .+..+.++.+++..+
T Consensus 239 llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL-~~~~e~l~~l~~~l~ 301 (424)
T PRK12297 239 VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDL-PEAEENLEEFKEKLG 301 (424)
T ss_pred EEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCC-cCCHHHHHHHHHHhC
Confidence 88875544321 113332 23333443 25688999999994 333445566665544
No 51
>PTZ00258 GTP-binding protein; Provisional
Probab=99.14 E-value=1.2e-10 Score=120.73 Aligned_cols=75 Identities=25% Similarity=0.320 Sum_probs=59.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc--------------------CCcEEEEecCCccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL--------------------TKRIFLIDCPGVVY 363 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~--------------------~~~i~liDtPGi~~ 363 (457)
...++|++||.||||||||+|+|++..+ .++++||||++.....+ +.++.++||||++.
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~~-~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFNALCKQQV-PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHHHHhcCcc-cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 4578999999999999999999988775 89999999987654322 22589999999996
Q ss_pred CCCC------------CccceEEEeccc
Q 012726 364 QNKD------------SETDIVLKGVVR 379 (457)
Q Consensus 364 ~~~~------------~e~dlvL~gvv~ 379 (457)
.... .++|++++.|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeC
Confidence 5432 357888885554
No 52
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.14 E-value=1.5e-10 Score=121.94 Aligned_cols=104 Identities=32% Similarity=0.405 Sum_probs=84.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCC-------------CCcc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNK-------------DSET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~-------------~~e~ 370 (457)
.+|+++|.||||||||+|+|++...+.+++.||+|++..+..+ +..+.|+||||+..... -.++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999988889999999987764432 45799999999976221 1367
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
|+++..++..+.+......+..+|++.+.+.+.+.|++|.
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~ 121 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDG 121 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccC
Confidence 8999877776666666667788888889999999999984
No 53
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.14 E-value=2.8e-10 Score=120.46 Aligned_cols=107 Identities=26% Similarity=0.271 Sum_probs=76.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c-CCcEEEEecCCcccCCC-------------C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L-TKRIFLIDCPGVVYQNK-------------D 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~-~~~i~liDtPGi~~~~~-------------~ 367 (457)
+.+++|+++|.||||||||+|+|++.....++++||+|++..... + +..+.++||||+..... -
T Consensus 201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 201 DDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred hcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 457899999999999999999999988878999999999865433 3 34689999999864321 1
Q ss_pred CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 368 SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
..+|+++..++.....+ ........+...+.+.+.+.||+|-.
T Consensus 281 ~~aD~il~V~D~s~~~s-~~~~~l~~~~~~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 281 KQADLVIYVLDASQPLT-KDDFLIIDLNKSKKPFILVLNKIDLK 323 (442)
T ss_pred hhCCEEEEEEECCCCCC-hhHHHHHHHhhCCCCEEEEEECccCC
Confidence 35788888655443332 22222233333466888999999843
No 54
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.14 E-value=2.1e-10 Score=113.67 Aligned_cols=158 Identities=13% Similarity=0.097 Sum_probs=103.9
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
+++++.++..++.+.|.+..--.+... .+.. +... ...+++.+.+++|+||++... ..+ ...|
T Consensus 7 G~pnvGKSTLln~L~~~~~~~vs~~~~-TTr~--------~i~~--i~~~~~~qii~vDTPG~~~~~-~~l-----~~~~ 69 (270)
T TIGR00436 7 GRPNVGKSTLLNQLHGQKISITSPKAQ-TTRN--------RISG--IHTTGASQIIFIDTPGFHEKK-HSL-----NRLM 69 (270)
T ss_pred CCCCCCHHHHHHHHhCCcEeecCCCCC-cccC--------cEEE--EEEcCCcEEEEEECcCCCCCc-chH-----HHHH
Confidence 456777777888888765221111100 0100 0000 011234567789999986431 112 2567
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCC-eeEEEeec
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-SLAFHASI 281 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p-~~~f~iSa 281 (457)
.+.++.++.++|+|++|+|+.++.... ..+.+.+.. .++|+++|+||+|++++.....+...+....+ ..+|++||
T Consensus 70 ~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA 146 (270)
T TIGR00436 70 MKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISA 146 (270)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEec
Confidence 788889999999999999998765432 445555554 47899999999999876655545544544433 36789999
Q ss_pred cCCCChHHHHHHHHHHHHh
Q 012726 282 NKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~~ 300 (457)
+++.|+++|++.|.+++++
T Consensus 147 ~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 147 LTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred CCCCCHHHHHHHHHHhCCC
Confidence 9999999999999998864
No 55
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.13 E-value=2.8e-10 Score=121.47 Aligned_cols=106 Identities=28% Similarity=0.335 Sum_probs=84.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCC-------------CC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNK-------------DS 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~-------------~~ 368 (457)
...+|++||.||||||||+|+|++.....+++.||+|++..+... +..+.|+||||+..... -.
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 116 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMR 116 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHH
Confidence 346899999999999999999999887788999999988765432 45789999999863211 13
Q ss_pred ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 369 ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
++|++|..++.....+.....+..++.+.+++.+.+.||+|.
T Consensus 117 ~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl 158 (472)
T PRK03003 117 TADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDD 158 (472)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 678999877766666555667788888888899999999985
No 56
>PRK04213 GTP-binding protein; Provisional
Probab=99.12 E-value=4.3e-10 Score=105.53 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=82.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC------------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK------------------ 366 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~------------------ 366 (457)
..++|+++|.+|||||||+|+|++.. ..++..||+|.....+... .+.++||||+.....
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK-VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIE 85 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999876 4678889999876666555 799999999632110
Q ss_pred --CCccceEEEeccccCC--c---------ccHHHHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHHcCC
Q 012726 367 --DSETDIVLKGVVRVTN--L---------EDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGK 427 (457)
Q Consensus 367 --~~e~dlvL~gvv~~~~--l---------~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r~g~ 427 (457)
...+++++..+..... + ......+...+...+.+.+.+.|++|-.....+.++.++...|.
T Consensus 86 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 86 DNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred hhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 0123566654443221 1 01123344555666788999999999654445566777777764
No 57
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.12 E-value=2.9e-10 Score=116.97 Aligned_cols=106 Identities=25% Similarity=0.276 Sum_probs=74.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc--CCcEEEEecCCcccC-CCC------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL--TKRIFLIDCPGVVYQ-NKD------------ 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~--~~~i~liDtPGi~~~-~~~------------ 367 (457)
..++|+++|+||||||||+|+|++.. ..+++.||+|.+.. .+.+ +..+.|+||||+... +..
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~-~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~ 266 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD-VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV 266 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc-eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999987 46788899987654 2333 357999999999532 111
Q ss_pred CccceEEEeccccCCcc-cHHHHHHHHHHhc---CcceehhhcCCCCC
Q 012726 368 SETDIVLKGVVRVTNLE-DAAEHIGEVLKRV---KKEHLKRAYKIKDW 411 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~-~~~~~i~~~L~~~---~~~~l~~~y~i~~~ 411 (457)
..+|+++..++..+... +....+..+|..+ ..+.+.+.||+|-.
T Consensus 267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~ 314 (351)
T TIGR03156 267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLL 314 (351)
T ss_pred HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCC
Confidence 35788888665543221 1222234556655 46789999999954
No 58
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.12 E-value=3.5e-10 Score=126.46 Aligned_cols=106 Identities=28% Similarity=0.287 Sum_probs=85.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..+|+++|.||||||||+|+|++.....+++.||+|++...... +..+.|+||||+...... .+
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 354 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSL 354 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHh
Confidence 46799999999999999999999888889999999998765433 457899999998642211 46
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+|++|..++..+.+......+...|++.+++.+.+.|++|..
T Consensus 355 aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~ 396 (712)
T PRK09518 355 ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQ 396 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence 789999777766666666677788888889999999999853
No 59
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.11 E-value=6.2e-10 Score=98.83 Aligned_cols=120 Identities=29% Similarity=0.335 Sum_probs=84.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c-CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L-TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~-~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..+|+++|.||+|||||+|+|++...+.+++.+++|+...... . ...+.++||||+...... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~ 82 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKD 82 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHh
Confidence 4679999999999999999999998877888888776543322 2 246889999998754321 34
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCH---HHHHHHHHHHc
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDE---NDFLLQLCKST 425 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~---~efL~~la~r~ 425 (457)
.|+++..+............+...+...+.+.+...+++|...+. .+++..++...
T Consensus 83 ~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04163 83 VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELG 141 (168)
T ss_pred CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhcc
Confidence 567777555444445555666667777778899999999865333 44555565543
No 60
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.11 E-value=2.7e-10 Score=121.50 Aligned_cols=104 Identities=26% Similarity=0.345 Sum_probs=71.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC------------Ccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD------------SET 370 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~------------~e~ 370 (457)
-..|++||+||||||||||+|.+.+. .++++|+||.......+ +.++.|+||||++..... ..+
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akp-kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera 237 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKP-KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC 237 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCc-cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence 35699999999999999999998765 68999999987654332 347999999999754322 346
Q ss_pred ceEEEeccccCCc---ccHHH---HHHHHHH--------------hcCcceehhhcCCCCC
Q 012726 371 DIVLKGVVRVTNL---EDAAE---HIGEVLK--------------RVKKEHLKRAYKIKDW 411 (457)
Q Consensus 371 dlvL~gvv~~~~l---~~~~~---~i~~~L~--------------~~~~~~l~~~y~i~~~ 411 (457)
+++++.++. ..+ .+|.. .+...|. ...++.|.+.||+|-.
T Consensus 238 dvLv~VVD~-s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~ 297 (500)
T PRK12296 238 AVLVHVVDC-ATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVP 297 (500)
T ss_pred CEEEEEECC-cccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccch
Confidence 788875543 222 12221 2222221 2346889999999854
No 61
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.10 E-value=3.8e-10 Score=100.14 Aligned_cols=104 Identities=30% Similarity=0.395 Sum_probs=77.1
Q ss_pred EEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCC-------------CCccceE
Q 012726 310 GFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNK-------------DSETDIV 373 (457)
Q Consensus 310 ~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~-------------~~e~dlv 373 (457)
+++|.+|||||||+|+|.+.....+++.|++|++...... +..+.++||||+..... ...+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 4789999999999999999887778889999976544332 35689999999876432 1356777
Q ss_pred EEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCC
Q 012726 374 LKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVD 413 (457)
Q Consensus 374 L~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~ 413 (457)
+..+............+..++.+.+.+.+...+++|....
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~ 120 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKE 120 (157)
T ss_pred EEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCCh
Confidence 7766554444444445666777778899999999986543
No 62
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.10 E-value=3.5e-10 Score=115.41 Aligned_cols=119 Identities=26% Similarity=0.338 Sum_probs=79.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--EcC--CcEEEEecCCcccCCCC------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TLT--KRIFLIDCPGVVYQNKD------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~~--~~i~liDtPGi~~~~~~------------~e~ 370 (457)
..|++||+||||||||+|+|++... .++++|+||...... .++ .++.|+||||+...... ..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~-~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc-cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 4689999999999999999998765 689999999865533 332 57999999999754322 246
Q ss_pred ceEEEeccccCC-cccHHHHHH---HHHHhc-----CcceehhhcCCCCCCC--HHHHHHHHHHHcC
Q 012726 371 DIVLKGVVRVTN-LEDAAEHIG---EVLKRV-----KKEHLKRAYKIKDWVD--ENDFLLQLCKSTG 426 (457)
Q Consensus 371 dlvL~gvv~~~~-l~~~~~~i~---~~L~~~-----~~~~l~~~y~i~~~~~--~~efL~~la~r~g 426 (457)
++++..++.... ..++...+. ..|..+ .++.+.+.|++|.... .+++.+.++...+
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~ 303 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALG 303 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcC
Confidence 777775543321 123333222 223322 4678899999995432 3455666666544
No 63
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.09 E-value=2.4e-10 Score=113.60 Aligned_cols=119 Identities=26% Similarity=0.280 Sum_probs=87.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc----CCcEEEEecCCcccCCCC------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL----TKRIFLIDCPGVVYQNKD------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~----~~~i~liDtPGi~~~~~~------------~e~ 370 (457)
-.||+||+||+|||||+|+|...+. .|++++.||........ ..++.+-|.||++..... +.+
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC-cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 3589999999999999999999888 99999999976553322 235999999999987654 346
Q ss_pred ceEEEeccccCC-cccHHHHHHHHHHhc--------CcceehhhcCCCCCCCHHHHHHHHHHHcC
Q 012726 371 DIVLKGVVRVTN-LEDAAEHIGEVLKRV--------KKEHLKRAYKIKDWVDENDFLLQLCKSTG 426 (457)
Q Consensus 371 dlvL~gvv~~~~-l~~~~~~i~~~L~~~--------~~~~l~~~y~i~~~~~~~efL~~la~r~g 426 (457)
+.++++++-... +.+|...+..+...+ .++.+++.|+||..+...++|+.|+++..
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq 340 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQ 340 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHcC
Confidence 677774443322 234544444333322 35789999999977777889999999876
No 64
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.09 E-value=4e-10 Score=119.59 Aligned_cols=104 Identities=27% Similarity=0.280 Sum_probs=73.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CCcEEEEecCCcccCCC-------------C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TKRIFLIDCPGVVYQNK-------------D 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~~i~liDtPGi~~~~~-------------~ 367 (457)
+.+++|+++|+||||||||+|+|++.....+++.||+|++... +.+ +..+.|+||||+..+.. -
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 3568999999999999999999999888789999999987643 233 34789999999865321 1
Q ss_pred CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 368 SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
..+|+++..++......... ...+......+.+.+.||+|
T Consensus 293 ~~aD~il~VvD~s~~~s~~~--~~~l~~~~~~piiiV~NK~D 332 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEED--DEILEELKDKPVIVVLNKAD 332 (449)
T ss_pred HhCCEEEEEecCCCCCChhH--HHHHHhcCCCCcEEEEEhhh
Confidence 35788888655543332111 11122233567788888887
No 65
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.09 E-value=5.9e-10 Score=114.03 Aligned_cols=103 Identities=25% Similarity=0.332 Sum_probs=71.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec--CCcEEEEecCCcccCCCC------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL--TKRIFLIDCPGVVYQNKD------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~--~~~i~liDtPGi~~~~~~------------~e~ 370 (457)
..|++||+||||||||+|+|++.+. .++++|+||...... .. ..++.++||||+...... ..+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~-~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC-ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 4589999999999999999998765 689999999876543 33 246999999999864332 246
Q ss_pred ceEEEeccccCCcc--cHHHHHHHHHHhc-----CcceehhhcCCCCC
Q 012726 371 DIVLKGVVRVTNLE--DAAEHIGEVLKRV-----KKEHLKRAYKIKDW 411 (457)
Q Consensus 371 dlvL~gvv~~~~l~--~~~~~i~~~L~~~-----~~~~l~~~y~i~~~ 411 (457)
++++..++.. +.. +....+...|..+ .++.+.+.||+|-.
T Consensus 238 ~vlI~ViD~s-~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~ 284 (335)
T PRK12299 238 RLLLHLVDIE-AVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL 284 (335)
T ss_pred CEEEEEEcCC-CCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence 7777755433 221 1122233334332 46889999999953
No 66
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.09 E-value=3.5e-10 Score=116.29 Aligned_cols=72 Identities=29% Similarity=0.401 Sum_probs=57.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEcC------------------CcEEEEecCCcccCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITLT------------------KRIFLIDCPGVVYQNK 366 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~~------------------~~i~liDtPGi~~~~~ 366 (457)
++||+||.||||||||+|+|++.. ..++++|+||++... +.++ .++.|+|+||++....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~-~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG-AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 689999999999999999999988 589999999986542 2222 2589999999997543
Q ss_pred C------------CccceEEEeccc
Q 012726 367 D------------SETDIVLKGVVR 379 (457)
Q Consensus 367 ~------------~e~dlvL~gvv~ 379 (457)
. .++|++++.|..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~ 106 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRC 106 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeC
Confidence 2 367888885554
No 67
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.08 E-value=7.2e-10 Score=108.93 Aligned_cols=61 Identities=23% Similarity=0.327 Sum_probs=51.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~ 364 (457)
...++|+++|.+|||||||+|+|++.....+++.+++|+..+.+.. +..+.||||||+...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~ 92 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLES 92 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcc
Confidence 4578999999999999999999999998888888888887665443 457999999999865
No 68
>PRK09866 hypothetical protein; Provisional
Probab=99.05 E-value=7e-10 Score=119.81 Aligned_cols=115 Identities=15% Similarity=0.094 Sum_probs=84.2
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..|.+++||||++..... .+.+.+.+.+.++|+||+|+|+..+++..+..+.+.|++...+.|+|+|+||+
T Consensus 229 ~~QIIFVDTPGIhk~~~~---------~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKI 299 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQP---------HLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKF 299 (741)
T ss_pred cCCEEEEECCCCCCccch---------HHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcc
Confidence 478899999999743221 12223334799999999999999888888888888887642225999999999
Q ss_pred CCCC-----hhhHHHHHHH-HHh-cC-CeeEEEeeccCCCChHHHHHHHHHH
Q 012726 254 DLVP-----AWATKGWLRV-LSK-EY-PSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 254 DLvp-----~~~~~~wl~~-l~~-~~-p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
|+.+ .+.+..+++. +.+ .. +..+|++||.+|.|++.|++.|.+.
T Consensus 300 Dl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 300 DQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 9975 3344444432 222 23 4678999999999999999999763
No 69
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.05 E-value=1.7e-09 Score=97.18 Aligned_cols=120 Identities=23% Similarity=0.276 Sum_probs=80.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EE-cCCcEEEEecCCcccCCCC---------------
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--IT-LTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~-~~~~i~liDtPGi~~~~~~--------------- 367 (457)
.++|+++|.+|+|||||+|+|++.....+++.|++|+.... +. .+..+.++||||+......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 47899999999999999999999877677888888876532 22 2356899999998644210
Q ss_pred -CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCC----HHHHHHHHHHHc
Q 012726 368 -SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVD----ENDFLLQLCKST 425 (457)
Q Consensus 368 -~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~----~~efL~~la~r~ 425 (457)
..+|+++..+............+...+...+.+.+...+++|.... .+++...+.+..
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 144 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKL 144 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhc
Confidence 2457777755544444333344444555556788999999985433 233444554443
No 70
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.05 E-value=1.2e-09 Score=122.74 Aligned_cols=119 Identities=19% Similarity=0.230 Sum_probs=85.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC---------------
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~--------------- 367 (457)
.++|+++|.||||||||+|+|++... .+++.||+|.+.....+ +..+.++||||+......
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~-~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQ-RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCC-ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 46899999999999999999999865 78999999987654332 347999999998753210
Q ss_pred --CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC--CCHHHHHHHHHHHcCC
Q 012726 368 --SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW--VDENDFLLQLCKSTGK 427 (457)
Q Consensus 368 --~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~--~~~~efL~~la~r~g~ 427 (457)
.+.|+++..++ ..+++ ...++...+.+.+.+.+...|++|.. .....-++.++++.|.
T Consensus 82 ~~~~aD~vI~VvD-at~le-r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~ 143 (772)
T PRK09554 82 LSGDADLLINVVD-ASNLE-RNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGC 143 (772)
T ss_pred hccCCCEEEEEec-CCcch-hhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCC
Confidence 24678876444 44443 23455566777889999999999953 2333345667776664
No 71
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.03 E-value=9e-10 Score=110.65 Aligned_cols=139 Identities=22% Similarity=0.297 Sum_probs=92.9
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EE--cCCcEEEEecCCcccCCCC------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--IT--LTKRIFLIDCPGVVYQNKD------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~--~~~~i~liDtPGi~~~~~~------------~e~d 371 (457)
.||+||+||+|||||||++...+. +++++|.||..... +. -...+++-|.||++...++ +.+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC-cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 489999999999999999999887 99999999986542 22 2456999999999987655 2455
Q ss_pred eEEEeccccCCc--ccHHHHHH---HHHHhc-----CcceehhhcCCCCCCC---HHHHHHHHHHHcCCc--------cc
Q 012726 372 IVLKGVVRVTNL--EDAAEHIG---EVLKRV-----KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGKL--------LR 430 (457)
Q Consensus 372 lvL~gvv~~~~l--~~~~~~i~---~~L~~~-----~~~~l~~~y~i~~~~~---~~efL~~la~r~g~l--------~k 430 (457)
++++ +++.... .+|...+. .-|+.+ .++.+.+.|++|-..+ .+++...++...++. ..
T Consensus 240 vL~h-viD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 240 VLLH-VIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred eeEE-EEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 6666 4443333 34544333 333333 4688999999994444 344566677665543 22
Q ss_pred CCcccHHHHHHHHHHHHH
Q 012726 431 VCLFLHFISWYLFFYDHI 448 (457)
Q Consensus 431 gg~pD~~~aa~~~l~d~~ 448 (457)
-|.-++..+...++....
T Consensus 319 ~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 319 EGLDELLRALAELLEETK 336 (369)
T ss_pred cCHHHHHHHHHHHHHHhh
Confidence 344455555555555543
No 72
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.02 E-value=4.2e-10 Score=111.93 Aligned_cols=70 Identities=30% Similarity=0.401 Sum_probs=54.7
Q ss_pred EEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEcCC------------------cEEEEecCCcccCCCC-
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITLTK------------------RIFLIDCPGVVYQNKD- 367 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~~~------------------~i~liDtPGi~~~~~~- 367 (457)
||+||.||||||||+|+|++... .++++|++|.+... +.+.. .+.++|+||++.....
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~-~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCC-ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 58999999999999999999988 89999999976543 22221 4899999999965433
Q ss_pred -----------CccceEEEeccc
Q 012726 368 -----------SETDIVLKGVVR 379 (457)
Q Consensus 368 -----------~e~dlvL~gvv~ 379 (457)
..+|++++.|..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeC
Confidence 357888885543
No 73
>PRK11058 GTPase HflX; Provisional
Probab=99.00 E-value=1.4e-09 Score=114.69 Aligned_cols=104 Identities=23% Similarity=0.252 Sum_probs=72.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEcC--CcEEEEecCCcccC-CC------------CCc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITLT--KRIFLIDCPGVVYQ-NK------------DSE 369 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~~--~~i~liDtPGi~~~-~~------------~~e 369 (457)
..|++||+||||||||+|+|++.... +++.||+|.+... +.++ ..+.|+||||+... +. ..+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ 276 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ 276 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhc
Confidence 58999999999999999999998875 8889999986543 3333 37899999999542 11 146
Q ss_pred cceEEEeccccCCcc-cHHHHHHHHHHhc---CcceehhhcCCCCC
Q 012726 370 TDIVLKGVVRVTNLE-DAAEHIGEVLKRV---KKEHLKRAYKIKDW 411 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~-~~~~~i~~~L~~~---~~~~l~~~y~i~~~ 411 (457)
+|+++..++..+... +....+..+|..+ ..+.+.+.||+|-.
T Consensus 277 ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~ 322 (426)
T PRK11058 277 ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDML 322 (426)
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCC
Confidence 788888666544321 1112233455544 46789999999954
No 74
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.99 E-value=3.8e-09 Score=106.36 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE---EcCCcEEEEecCCcccC
Q 012726 288 GSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI---TLTKRIFLIDCPGVVYQ 364 (457)
Q Consensus 288 ~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~---~~~~~i~liDtPGi~~~ 364 (457)
..|++.|..+-. .+...++|+++|.+||||||++|+|++..++.+++.+++|...... .-+.++.+|||||+...
T Consensus 22 ~~l~~~l~~l~~--~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 22 TKLLELLGKLKE--EDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEG 99 (313)
T ss_pred HHHHHHHHhccc--ccccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCch
Confidence 345555544321 1346789999999999999999999999988888887765443222 23558999999999865
Q ss_pred CCC--------------CccceEEEecccc--CCcccHHHHHHHHHHhc-C----cceehhhcCCCC----CCCHHHHHH
Q 012726 365 NKD--------------SETDIVLKGVVRV--TNLEDAAEHIGEVLKRV-K----KEHLKRAYKIKD----WVDENDFLL 419 (457)
Q Consensus 365 ~~~--------------~e~dlvL~gvv~~--~~l~~~~~~i~~~L~~~-~----~~~l~~~y~i~~----~~~~~efL~ 419 (457)
... ...|++|.. ++. ..+++.+..+...+... + .+.+..+..-+. -.+.++|++
T Consensus 100 ~~~~e~~~~~ik~~l~~~g~DvVLyV-~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~ 178 (313)
T TIGR00991 100 GYINDQAVNIIKRFLLGKTIDVLLYV-DRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFS 178 (313)
T ss_pred HHHHHHHHHHHHHHhhcCCCCEEEEE-eccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHH
Confidence 211 135667763 332 24444444444444433 2 344555555442 234566643
No 75
>PRK00089 era GTPase Era; Reviewed
Probab=98.99 E-value=2.2e-09 Score=107.25 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=92.8
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
+..+.+++|+||++.... .+. +.+...++..+..+|+|++|+|+.++++.....+.+.+.. .++|+++|+||
T Consensus 51 ~~~qi~~iDTPG~~~~~~-~l~-----~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~--~~~pvilVlNK 122 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKR-ALN-----RAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKK--VKTPVILVLNK 122 (292)
T ss_pred CCceEEEEECCCCCCchh-HHH-----HHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhh--cCCCEEEEEEC
Confidence 346778899999864321 111 5667788889999999999999998776666666666653 36899999999
Q ss_pred CCCC-ChhhHHHHHHHHHhcCC-eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 253 CDLV-PAWATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLv-p~~~~~~wl~~l~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+|++ +.......++.+.+.++ ..+|++||.++.|+++|++.|..+++.
T Consensus 123 iDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 123 IDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPE 172 (292)
T ss_pred CcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCC
Confidence 9999 55666667777766554 567889999999999999999988764
No 76
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.98 E-value=2.8e-09 Score=96.46 Aligned_cols=103 Identities=28% Similarity=0.284 Sum_probs=66.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC--------------Ccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD--------------SET 370 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~--------------~e~ 370 (457)
+|+++|.+|||||||+|+|.+... .+++.|++|........ +.++.|+||||+...... ...
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKP-EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCC-ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 689999999999999999998765 46678888876654332 247999999998532111 113
Q ss_pred ceEEEeccccCCcc---cHHHHHHHHHHhc--CcceehhhcCCCCC
Q 012726 371 DIVLKGVVRVTNLE---DAAEHIGEVLKRV--KKEHLKRAYKIKDW 411 (457)
Q Consensus 371 dlvL~gvv~~~~l~---~~~~~i~~~L~~~--~~~~l~~~y~i~~~ 411 (457)
|.++..++...... +....+...+... ..+.+...++.|..
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~ 126 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLL 126 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccC
Confidence 55665444332211 1112233334333 56889999999854
No 77
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.98 E-value=3e-09 Score=96.26 Aligned_cols=101 Identities=26% Similarity=0.377 Sum_probs=65.3
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CC-cEEEEecCCcccCCCC------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TK-RIFLIDCPGVVYQNKD------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~-~i~liDtPGi~~~~~~------------~e~d 371 (457)
.|+++|.+|||||||+|+|.+... .++..|++|..... +.. +. ++.|+||||+...... ..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 489999999999999999998665 67788888865432 222 33 7899999998532111 2367
Q ss_pred eEEEeccccCC---cccHHHHHHHHHHhc-----CcceehhhcCCCC
Q 012726 372 IVLKGVVRVTN---LEDAAEHIGEVLKRV-----KKEHLKRAYKIKD 410 (457)
Q Consensus 372 lvL~gvv~~~~---l~~~~~~i~~~L~~~-----~~~~l~~~y~i~~ 410 (457)
+++..++.... +.... .+...+... .++.+.+.+++|.
T Consensus 81 ~vi~v~D~~~~~~~~~~~~-~~~~~l~~~~~~~~~~p~ivv~NK~Dl 126 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYK-TIRNELELYNPELLEKPRIVVLNKIDL 126 (170)
T ss_pred EEEEEEecCCCCCHHHHHH-HHHHHHHHhCccccccccEEEEEchhc
Confidence 77775544322 11111 222223222 4577888999984
No 78
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.97 E-value=2.6e-09 Score=94.66 Aligned_cols=104 Identities=29% Similarity=0.320 Sum_probs=71.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-~~~i~liDtPGi~~~~~~-------------~e 369 (457)
+++|+++|.+|+|||||+|+|++.....+++.|++|...... .. +..+.++||||+...... ..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 357999999999999999999998877788899999765432 22 347899999998654211 24
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+++++..+............+... ....+.+...+++|..
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLL 120 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcC
Confidence 677776444333232222222211 3467889999999854
No 79
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.96 E-value=3.1e-09 Score=94.69 Aligned_cols=113 Identities=27% Similarity=0.277 Sum_probs=73.8
Q ss_pred EeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CCcEEEEecCCcccCCCC-------------CccceEE
Q 012726 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TKRIFLIDCPGVVYQNKD-------------SETDIVL 374 (457)
Q Consensus 311 vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~~i~liDtPGi~~~~~~-------------~e~dlvL 374 (457)
++|.+|||||||+|+|++.. ..+++.||+|.+.+. +.+ +..+.++||||+...... ..+++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR-QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc-ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 58999999999999999876 577888999886542 223 357899999998542211 2567777
Q ss_pred EeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCC--HHHHHHHHHHHcC
Q 012726 375 KGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVD--ENDFLLQLCKSTG 426 (457)
Q Consensus 375 ~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~--~~efL~~la~r~g 426 (457)
..++. ..... .......+...+.+.+...+++|-... .....+.++...|
T Consensus 80 ~v~d~-~~~~~-~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 131 (158)
T cd01879 80 NVVDA-TNLER-NLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLG 131 (158)
T ss_pred EEeeC-Ccchh-HHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhC
Confidence 64443 33322 222333445567889999999984322 2223456666655
No 80
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.95 E-value=2.5e-09 Score=110.21 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCC-----CCceecCCCCceeEEEEEEcC--CcEEEEec
Q 012726 286 GKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK-----NVCKVAPIPGETKVWQYITLT--KRIFLIDC 358 (457)
Q Consensus 286 Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~-----~~~~vs~~pg~T~~~~~~~~~--~~i~liDt 358 (457)
++.+..+.|++.+... +..+++|+|+|-+|+|||||||+|+|- ..+.++.+ .||.....+..+ .++.|+|.
T Consensus 16 ~~~~~~s~i~~~l~~~-~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~p~~pnv~lWDl 93 (376)
T PF05049_consen 16 NLQEVVSKIREALKDI-DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPHPKFPNVTLWDL 93 (376)
T ss_dssp -HHHHHHHHHHHHHHH-HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-SS-TTEEEEEE
T ss_pred CHHHHHHHHHHHHHHh-hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCCCCCCCCeEEeC
Confidence 3444555555554422 235789999999999999999999873 23334433 355555444433 48999999
Q ss_pred CCcccCCCC----------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 359 PGVVYQNKD----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 359 PGi~~~~~~----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
||+..+... ...|+++ ++..+.+.+....+...+.+++++.+.++.++|
T Consensus 94 PG~gt~~f~~~~Yl~~~~~~~yD~fi--ii~s~rf~~ndv~La~~i~~~gK~fyfVRTKvD 152 (376)
T PF05049_consen 94 PGIGTPNFPPEEYLKEVKFYRYDFFI--IISSERFTENDVQLAKEIQRMGKKFYFVRTKVD 152 (376)
T ss_dssp --GGGSS--HHHHHHHTTGGG-SEEE--EEESSS--HHHHHHHHHHHHTT-EEEEEE--HH
T ss_pred CCCCCCCCCHHHHHHHccccccCEEE--EEeCCCCchhhHHHHHHHHHcCCcEEEEEeccc
Confidence 999887654 2456655 466778888888888899999999999999886
No 81
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.94 E-value=5.6e-09 Score=98.62 Aligned_cols=103 Identities=20% Similarity=0.195 Sum_probs=71.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecC---CCCceeEEEEEEc--CCcEEEEecCCcccCCCC----------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAP---IPGETKVWQYITL--TKRIFLIDCPGVVYQNKD----------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~---~pg~T~~~~~~~~--~~~i~liDtPGi~~~~~~----------~e 369 (457)
+++|+++|.+|||||||||+|++..... ... ...+|.....+.. ...+.++||||+...... ..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 3679999999999999999999854322 111 1123444444432 247899999999754221 24
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
+|+++.. ..+.+...+..+...+...+++.+.+.+|+|.
T Consensus 81 ~d~~l~v--~~~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~ 119 (197)
T cd04104 81 YDFFIII--SSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDR 119 (197)
T ss_pred cCEEEEE--eCCCCCHHHHHHHHHHHHhCCCEEEEEecccc
Confidence 5666653 34567777777788888888899999999995
No 82
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.94 E-value=1e-08 Score=106.04 Aligned_cols=144 Identities=17% Similarity=0.185 Sum_probs=105.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCC----CCc-----------eecCCCC---ceeEEEEE-------EcC----CcEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTK----NVC-----------KVAPIPG---ETKVWQYI-------TLT----KRIF 354 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~----~~~-----------~vs~~pg---~T~~~~~~-------~~~----~~i~ 354 (457)
...+.||+||..|+|||||||++++. ... -+++.+| +|++..++ .+. .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 35689999999999999999999998 554 5788999 88876552 333 5799
Q ss_pred EEecCCcccCCCC-----------------------------------CccceEEEec-ccc------CCcccHHHHHHH
Q 012726 355 LIDCPGVVYQNKD-----------------------------------SETDIVLKGV-VRV------TNLEDAAEHIGE 392 (457)
Q Consensus 355 liDtPGi~~~~~~-----------------------------------~e~dlvL~gv-v~~------~~l~~~~~~i~~ 392 (457)
||||+|+...... +.+++.|... +.. ++..+.+..+..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 9999999876422 1345555433 221 456677888888
Q ss_pred HHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCCc------ccCCcccHHHHHHHHHHHH
Q 012726 393 VLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGKL------LRVCLFLHFISWYLFFYDH 447 (457)
Q Consensus 393 ~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~l------~kgg~pD~~~aa~~~l~d~ 447 (457)
.|+..+++.+..+|+.++. ....++.+.+..+++.- ..=.+.|+...-+.+|.+|
T Consensus 175 eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~EF 236 (492)
T TIGR02836 175 ELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYEF 236 (492)
T ss_pred HHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhcC
Confidence 9999999999999999975 45566777787777741 1124668888878887765
No 83
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.93 E-value=4.9e-09 Score=93.40 Aligned_cols=103 Identities=23% Similarity=0.354 Sum_probs=74.4
Q ss_pred EEEeecCCCchHHHHHHHhC-CCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC------------------Cc
Q 012726 309 VGFVGYPNVGKSSVINTLRT-KNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD------------------SE 369 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~-~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~------------------~e 369 (457)
|+++|.+|+|||||+|+|.+ ......++.+|+|.....+..+..++++||||+...... +.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENREN 81 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhChh
Confidence 79999999999999999994 455567888999988887777779999999998653110 12
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
.++++..+............+...+.....+.+...+++|..
T Consensus 82 ~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~ 123 (170)
T cd01876 82 LKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKL 123 (170)
T ss_pred hhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcC
Confidence 234555333333333444556677777777888888998853
No 84
>PRK15494 era GTPase Era; Provisional
Probab=98.92 E-value=3.8e-09 Score=108.24 Aligned_cols=119 Identities=20% Similarity=0.231 Sum_probs=88.3
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
+..+.++.|+||++.... .+ ...|.+.++.++..+|+||+|+|+.+++......+.+.+.. .+.|.|+|+||
T Consensus 98 ~~~qi~~~DTpG~~~~~~-~l-----~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~--~~~p~IlViNK 169 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKG-SL-----EKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRS--LNIVPIFLLNK 169 (339)
T ss_pred CCeEEEEEECCCcCCCcc-cH-----HHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEh
Confidence 345677899999863211 11 25678888889999999999999988776554455555553 35788999999
Q ss_pred CCCCChhhHHHHHHHHHhcCC-eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 253 CDLVPAWATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLvp~~~~~~wl~~l~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+|+.+. ......+.+....+ ..+|++||+++.|+++|++.|.+.+++
T Consensus 170 iDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 170 IDIESK-YLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred hcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 999754 33445555555544 568899999999999999999988875
No 85
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=98.91 E-value=3.8e-09 Score=105.52 Aligned_cols=90 Identities=26% Similarity=0.359 Sum_probs=64.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE---EEEcCCcEEEEecCCcccCCCC------------Ccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ---YITLTKRIFLIDCPGVVYQNKD------------SET 370 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~---~~~~~~~i~liDtPGi~~~~~~------------~e~ 370 (457)
..+|++||+||||||||+|.|++.+. .++.+|.||.... .-+-+-+|+|+|+||++..... ..+
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~A 141 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNA 141 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCCc-cccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccC
Confidence 46899999999999999999999886 8899999997543 2233668999999999987543 246
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhc
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRV 397 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~ 397 (457)
|+++..++..+.. ...+.+...|+..
T Consensus 142 DlIiiVld~~~~~-~~~~~i~~ELe~~ 167 (365)
T COG1163 142 DLIIIVLDVFEDP-HHRDIIERELEDV 167 (365)
T ss_pred CEEEEEEecCCCh-hHHHHHHHHHHhc
Confidence 7777744433222 2133445555544
No 86
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.89 E-value=5.8e-09 Score=97.46 Aligned_cols=96 Identities=24% Similarity=0.252 Sum_probs=68.7
Q ss_pred HHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChh---hHHHHHHHHHhcC------
Q 012726 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW---ATKGWLRVLSKEY------ 272 (457)
Q Consensus 202 ~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~---~~~~wl~~l~~~~------ 272 (457)
...++...+..+|++|+|+|+.+++........+.+.. .+.|+|+|+||+|++... ..+++.+.+.+.+
T Consensus 83 f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~ 160 (188)
T PF00009_consen 83 FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEE 160 (188)
T ss_dssp HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTS
T ss_pred eeecccceecccccceeeeecccccccccccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccc
Confidence 45566778999999999999998876555555555544 378999999999998432 2233333332222
Q ss_pred CeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 273 PSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 273 p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
...++++||.+|+|+..|++.|.+++|
T Consensus 161 ~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 161 IVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 246788999999999999999988765
No 87
>COG2262 HflX GTPases [General function prediction only]
Probab=98.87 E-value=1.8e-08 Score=103.56 Aligned_cols=109 Identities=26% Similarity=0.262 Sum_probs=76.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE----EEEEEcCCcEEEEecCCcccCCCC-------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV----WQYITLTKRIFLIDCPGVVYQNKD------------- 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~----~~~~~~~~~i~liDtPGi~~~~~~------------- 367 (457)
.-..|++|||+|+|||||+|+|++..+ .+.+....|-+ ...+..+..+.|-||-||+..-+.
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~-~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADV-YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCe-eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 346899999999999999999998776 33444443332 222333568999999999875332
Q ss_pred CccceEEEeccccCC-cccHHHHHHHHHHhcC---cceehhhcCCCCCCCH
Q 012726 368 SETDIVLKGVVRVTN-LEDAAEHIGEVLKRVK---KEHLKRAYKIKDWVDE 414 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~-l~~~~~~i~~~L~~~~---~~~l~~~y~i~~~~~~ 414 (457)
.++|++|+.|+.++. +......+..+|..++ ++.|.++||+|.-.+.
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE 320 (411)
T ss_pred hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch
Confidence 368999998877654 2233345566777763 5889999999854443
No 88
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.87 E-value=1.1e-08 Score=92.33 Aligned_cols=113 Identities=20% Similarity=0.182 Sum_probs=72.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc----CCcEEEEecCCcccCC-----CCCccceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL----TKRIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~----~~~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
.|+++|.+|+|||||+|+|++.... ....+++|.+... +.. +..+.++||||..... ....+|+++..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccc-cccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 4899999999999999999986653 3345667765432 222 3478999999974321 12456777775
Q ss_pred ccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC-CHHHHHHHH
Q 012726 377 VVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-DENDFLLQL 421 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~-~~~efL~~l 421 (457)
+...+............+...+.+.+.+.+++|-.. +.+.+.+.+
T Consensus 81 ~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~ 126 (168)
T cd01887 81 VAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNEL 126 (168)
T ss_pred EECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHH
Confidence 555443322333334456667788999999998432 333444433
No 89
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.86 E-value=7.8e-09 Score=92.52 Aligned_cols=105 Identities=22% Similarity=0.182 Sum_probs=65.3
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceec--CCCCceeEEEE--EEc--CCcEEEEecCCcccCC-----CCCccceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVA--PIPGETKVWQY--ITL--TKRIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs--~~pg~T~~~~~--~~~--~~~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
.|+++|.+|||||||+|+|++....... ..+++|.+..+ +.+ +..+.++||||..... ....+|+++..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 5899999999999999999975432222 24677765433 222 3478999999974321 11357888875
Q ss_pred ccccCCcccHHHHHHHHHHhcCc-ceehhhcCCCCCC
Q 012726 377 VVRVTNLEDAAEHIGEVLKRVKK-EHLKRAYKIKDWV 412 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~~~~~-~~l~~~y~i~~~~ 412 (457)
+...+............+...+. +.+...+++|-..
T Consensus 82 ~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 118 (164)
T cd04171 82 VAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVD 118 (164)
T ss_pred EECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccC
Confidence 55433221212222234444443 7888999998543
No 90
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.86 E-value=1.3e-08 Score=91.57 Aligned_cols=91 Identities=21% Similarity=0.192 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC-ChhhHHHHHHHHHhcCCeeEEE
Q 012726 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV-PAWATKGWLRVLSKEYPSLAFH 278 (457)
Q Consensus 200 kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv-p~~~~~~wl~~l~~~~p~~~f~ 278 (457)
.++++.+.....++|+|++|.||.++....++.+...+ .+|+|-|+||+|+. +...++.-.++|+..+...+|.
T Consensus 51 ~~~y~aLi~ta~dad~V~ll~dat~~~~~~pP~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~ 125 (143)
T PF10662_consen 51 PRFYHALIVTAQDADVVLLLQDATEPRSVFPPGFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFE 125 (143)
T ss_pred HHHHHHHHHHHhhCCEEEEEecCCCCCccCCchhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEE
Confidence 67888999999999999999999999999998887765 58999999999998 3334444445666666566799
Q ss_pred eeccCCCChHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLR 295 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~ 295 (457)
+|+.++.|+++|.++|+
T Consensus 126 vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 126 VSAVTGEGIEELKDYLE 142 (143)
T ss_pred EECCCCcCHHHHHHHHh
Confidence 99999999999998875
No 91
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.86 E-value=1.9e-08 Score=89.21 Aligned_cols=110 Identities=21% Similarity=0.221 Sum_probs=81.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||+..... .-.+.++++....+..+|++++|+|++++.......+.+++... +.|+++|+||+|+
T Consensus 46 ~~~i~DtpG~~~~~~------~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~--~~piiiv~nK~D~ 117 (157)
T cd01894 46 EFILIDTGGIEPDDE------GISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS--KKPVILVVNKVDN 117 (157)
T ss_pred EEEEEECCCCCCchh------HHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhc--CCCEEEEEECccc
Confidence 345789999754322 11256777888889999999999999998887777777777653 6999999999999
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
.+.... ...+.......++.+|++++.|+++|++.|.+
T Consensus 118 ~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (157)
T cd01894 118 IKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAILE 155 (157)
T ss_pred CChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHHHh
Confidence 876543 22222222234678899999999999988865
No 92
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.84 E-value=6.1e-09 Score=94.46 Aligned_cols=100 Identities=30% Similarity=0.299 Sum_probs=65.3
Q ss_pred EeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc--CCcEEEEecCCcccCCC------------CCccceEE
Q 012726 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL--TKRIFLIDCPGVVYQNK------------DSETDIVL 374 (457)
Q Consensus 311 vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~--~~~i~liDtPGi~~~~~------------~~e~dlvL 374 (457)
++|.+|||||||+|+|.+... .+++.|++|..... +.. +..+.++||||+..... -..+++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999999876 67888998876543 222 46789999999853211 02467777
Q ss_pred EeccccCC--------cccHHHHHHHHHHh---------cCcceehhhcCCCCC
Q 012726 375 KGVVRVTN--------LEDAAEHIGEVLKR---------VKKEHLKRAYKIKDW 411 (457)
Q Consensus 375 ~gvv~~~~--------l~~~~~~i~~~L~~---------~~~~~l~~~y~i~~~ 411 (457)
..++.... ..+.......+... ...+.+.+.+++|..
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~ 133 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLD 133 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcC
Confidence 75544332 11111222233222 356788889999854
No 93
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.83 E-value=6.8e-09 Score=98.83 Aligned_cols=104 Identities=16% Similarity=0.130 Sum_probs=68.5
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceec------------------------------CCCCceeEEEEEEc---CCcEE
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVA------------------------------PIPGETKVWQYITL---TKRIF 354 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs------------------------------~~pg~T~~~~~~~~---~~~i~ 354 (457)
+|+++|++|+|||||+|+|+......++ ..+|+|.+.....+ +.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 4899999999999999999864322221 11677876543332 45799
Q ss_pred EEecCCcccCCC-----CCccceEEEeccccCCcccHHHHHHHHHHhcCc-ceehhhcCCCCC
Q 012726 355 LIDCPGVVYQNK-----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK-EHLKRAYKIKDW 411 (457)
Q Consensus 355 liDtPGi~~~~~-----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~-~~l~~~y~i~~~ 411 (457)
|+||||...... -..+|+++..+...+.+......+..++...+. ..+.+.+++|..
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 143 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV 143 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence 999999743211 146788888666655554444445556666664 456689999853
No 94
>PRK09602 translation-associated GTPase; Reviewed
Probab=98.80 E-value=1.5e-08 Score=105.98 Aligned_cols=72 Identities=31% Similarity=0.393 Sum_probs=54.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE-----------------------c----CCcEEEEecC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT-----------------------L----TKRIFLIDCP 359 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~-----------------------~----~~~i~liDtP 359 (457)
++|++||.||||||||+|+|++... .++++|++|.+..... . ...+.++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~-~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcc-cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 5799999999999999999999875 6789999997654321 0 1247899999
Q ss_pred CcccCCCC------------CccceEEEeccc
Q 012726 360 GVVYQNKD------------SETDIVLKGVVR 379 (457)
Q Consensus 360 Gi~~~~~~------------~e~dlvL~gvv~ 379 (457)
|++..... ..+|++++.+..
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~ 112 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDA 112 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeC
Confidence 99865322 257888874444
No 95
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.80 E-value=2.7e-09 Score=111.37 Aligned_cols=142 Identities=20% Similarity=0.200 Sum_probs=89.4
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCCCcc---------
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKDSET--------- 370 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~~e~--------- 370 (457)
+...-++.++|+||||||||+|.++...+ .|.|+|.||+..-..+++- ..+++|||||..+..+...
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradv-evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADD-EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhccccccccc-ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 45567899999999999999999998887 8999999999766555543 5789999999987654211
Q ss_pred -----ceEEEeccccCCc-ccHHHHHHHHHHhc-----CcceehhhcCCCC--CC----CHHHHHHHHHHHcC-------
Q 012726 371 -----DIVLKGVVRVTNL-EDAAEHIGEVLKRV-----KKEHLKRAYKIKD--WV----DENDFLLQLCKSTG------- 426 (457)
Q Consensus 371 -----dlvL~gvv~~~~l-~~~~~~i~~~L~~~-----~~~~l~~~y~i~~--~~----~~~efL~~la~r~g------- 426 (457)
..+|...+-.+.- ..+++++ .+...+ +++.|.+++++|- .+ ...++++.+...-+
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEec
Confidence 1233311111100 0111211 122222 3568889999983 22 23467777766554
Q ss_pred CcccCCcccHHH-HHHHHHHH
Q 012726 427 KLLRVCLFLHFI-SWYLFFYD 446 (457)
Q Consensus 427 ~l~kgg~pD~~~-aa~~~l~d 446 (457)
.+.--|..+..+ ||..+|..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 323 CVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred ccchhceeeHHHHHHHHHHHH
Confidence 445567888766 44455543
No 96
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.80 E-value=3.7e-08 Score=107.03 Aligned_cols=60 Identities=25% Similarity=0.333 Sum_probs=47.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCC-CCceeEEEEE--EcCCcEEEEecCCcccCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPI-PGETKVWQYI--TLTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~-pg~T~~~~~~--~~~~~i~liDtPGi~~~~ 365 (457)
.++|+++|.|||||||+||+|++..++.++.. |+||+..... ..+..+.||||||+....
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~ 180 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSA 180 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccc
Confidence 57899999999999999999999988887775 6666543322 225679999999999763
No 97
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.79 E-value=2.1e-08 Score=99.66 Aligned_cols=120 Identities=19% Similarity=0.167 Sum_probs=84.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCC-----Cceec------------CCCCceeEEEEEE---cCCcEEEEecCCcccCCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKN-----VCKVA------------PIPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD 367 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~-----~~~vs------------~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~ 367 (457)
+|+++|++|+|||||+|+|+... ...+. ...|+|.+..... -+.++.|+||||.......
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 48999999999999999997311 11121 1246665533222 2457899999998643221
Q ss_pred -----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 368 -----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 368 -----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
..+|.++..+...+.+......+...+...+.+.+...||+|.. .+.+..++.+....+.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~ 146 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGA 146 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 35688888677666676666677777788888999999999965 3667788888887775
No 98
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.78 E-value=2.8e-08 Score=94.16 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=74.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC------C-ce--------ecCCCCceeEEEEEEc---CCcEEEEecCCcccCCC-
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN------V-CK--------VAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNK- 366 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~------~-~~--------vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~- 366 (457)
.++|+++|++|+|||||+++|+... . .. .....|+|.+.....+ +.++.|+||||......
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4789999999999999999998531 0 00 0114677776544433 45789999999753211
Q ss_pred ----CCccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCC
Q 012726 367 ----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDW 411 (457)
Q Consensus 367 ----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~ 411 (457)
-..+|.++..+...+.+......+..++...+.+ .+...+++|..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~ 131 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMV 131 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCC
Confidence 1467888886766666766666667777877766 66889999964
No 99
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.3e-08 Score=103.91 Aligned_cols=72 Identities=28% Similarity=0.426 Sum_probs=56.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE----EE------------cC-----CcEEEEecCCcccC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY----IT------------LT-----KRIFLIDCPGVVYQ 364 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~----~~------------~~-----~~i~liDtPGi~~~ 364 (457)
.+++|+||.||||||||+|+|+... +..+++|.||.+... ++ ++ -.+.++|.+|++..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCC-ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999999999999988 689999999976532 11 11 24789999999987
Q ss_pred CCC------------CccceEEEecc
Q 012726 365 NKD------------SETDIVLKGVV 378 (457)
Q Consensus 365 ~~~------------~e~dlvL~gvv 378 (457)
.+. .++|.++++|.
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr 106 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVR 106 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEE
Confidence 654 46788887443
No 100
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.75 E-value=3.9e-08 Score=95.60 Aligned_cols=89 Identities=26% Similarity=0.335 Sum_probs=59.7
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE---EcCCcEEEEecCCcccCCC------------CCccce
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI---TLTKRIFLIDCPGVVYQNK------------DSETDI 372 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~---~~~~~i~liDtPGi~~~~~------------~~e~dl 372 (457)
+|+++|.||||||||+|+|++... .++..|++|.+.... .-+..+.++||||+..... ...+|+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~-~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~ 80 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS-EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADL 80 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc-cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCE
Confidence 689999999999999999999764 578889998655432 2245789999999864321 135677
Q ss_pred EEEeccccCCcccHHHHHHHHHHhcC
Q 012726 373 VLKGVVRVTNLEDAAEHIGEVLKRVK 398 (457)
Q Consensus 373 vL~gvv~~~~l~~~~~~i~~~L~~~~ 398 (457)
++..+... +.......+.+.|+..+
T Consensus 81 il~V~D~t-~~~~~~~~~~~~l~~~g 105 (233)
T cd01896 81 ILMVLDAT-KPEGHREILERELEGVG 105 (233)
T ss_pred EEEEecCC-cchhHHHHHHHHHHHcC
Confidence 77644332 22223334455565443
No 101
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.75 E-value=5.5e-08 Score=91.58 Aligned_cols=107 Identities=24% Similarity=0.238 Sum_probs=68.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CC-cEEEEecCCcccCCCC-------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TK-RIFLIDCPGVVYQNKD------------- 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~-~i~liDtPGi~~~~~~------------- 367 (457)
..++|+++|.+|||||||+|.|++... .+...++.|..... +.. +. .+.++||||+......
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 118 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADV-YAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEV 118 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchh-ccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHH
Confidence 357999999999999999999999764 44455666654332 222 22 7899999998643111
Q ss_pred CccceEEEeccccCCcc-cHHHHHHHHHHhc---CcceehhhcCCCCCC
Q 012726 368 SETDIVLKGVVRVTNLE-DAAEHIGEVLKRV---KKEHLKRAYKIKDWV 412 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~-~~~~~i~~~L~~~---~~~~l~~~y~i~~~~ 412 (457)
..+|+++..++..+... .....+...+..+ +.+.+.+.|++|-..
T Consensus 119 ~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~ 167 (204)
T cd01878 119 AEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred hcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCC
Confidence 24577776554433221 1122334455544 457899999998644
No 102
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.75 E-value=2.2e-08 Score=95.80 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=56.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecC-CCCceeEEEEE---EcCCcEEEEecCCcccCCCC---------------
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAP-IPGETKVWQYI---TLTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~-~pg~T~~~~~~---~~~~~i~liDtPGi~~~~~~--------------- 367 (457)
.+|.++|.+|+||||++|+|+|......+. ...+|...+.. .-+..+.+|||||+......
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 479999999999999999999998876653 34556544432 23568999999999765432
Q ss_pred -CccceEEEeccccCCcccHHHHHHHHHHhc
Q 012726 368 -SETDIVLKGVVRVTNLEDAAEHIGEVLKRV 397 (457)
Q Consensus 368 -~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~ 397 (457)
...+++|. |++...+++-+..+...+..+
T Consensus 81 ~~g~ha~ll-Vi~~~r~t~~~~~~l~~l~~~ 110 (212)
T PF04548_consen 81 SPGPHAFLL-VIPLGRFTEEDREVLELLQEI 110 (212)
T ss_dssp TT-ESEEEE-EEETTB-SHHHHHHHHHHHHH
T ss_pred cCCCeEEEE-EEecCcchHHHHHHHHHHHHH
Confidence 12456665 566667877666666555543
No 103
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.74 E-value=3.8e-08 Score=90.03 Aligned_cols=120 Identities=20% Similarity=0.078 Sum_probs=72.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc--------ee------cCCCCceeEEEEEEc--------CCcEEEEecCCcccCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC--------KV------APIPGETKVWQYITL--------TKRIFLIDCPGVVYQN 365 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~--------~v------s~~pg~T~~~~~~~~--------~~~i~liDtPGi~~~~ 365 (457)
+|+++|.+|||||||+|+|++...+ .. ....|+|...+.+.+ ...+.|+||||.....
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 5899999999999999999874211 01 112355543322111 2357899999986432
Q ss_pred CC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC-CHHHHHHHHHHHcCC
Q 012726 366 KD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-DENDFLLQLCKSTGK 427 (457)
Q Consensus 366 ~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~-~~~efL~~la~r~g~ 427 (457)
.. ..+|.++..++..+............+...+.+.+.+.+++|-.. ...+.++.++...|.
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~ 149 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCC
Confidence 11 357777775554433322222222233345667899999999543 345566777777664
No 104
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.74 E-value=7e-08 Score=91.56 Aligned_cols=110 Identities=16% Similarity=0.116 Sum_probs=73.6
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-CCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
.+..+.|+||.. .+.......+..+|++++|+|+.+|. ..........+.. ...+|+|+|+||+
T Consensus 83 ~~i~~iDtPG~~--------------~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGHE--------------ILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCChH--------------HHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEch
Confidence 345678888853 35567777888999999999998753 2222333333332 2235789999999
Q ss_pred CCCChhhHHHHHHHHHhc------CCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 254 DLVPAWATKGWLRVLSKE------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~~------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
|+.+........+.+.+. ....+|++||+++.|+++|++.|.+.++
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 998754333222333221 1245788899999999999999987664
No 105
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.72 E-value=9.4e-08 Score=83.39 Aligned_cols=102 Identities=28% Similarity=0.318 Sum_probs=72.0
Q ss_pred EeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc----CCcEEEEecCCcccCCCC------------CccceEE
Q 012726 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL----TKRIFLIDCPGVVYQNKD------------SETDIVL 374 (457)
Q Consensus 311 vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~----~~~i~liDtPGi~~~~~~------------~e~dlvL 374 (457)
++|.+|+|||||+|+|.+......++.+++|........ ...+.++||||+...... ..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 589999999999999999888778888888876543332 457999999998765322 3467777
Q ss_pred EeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 375 KGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 375 ~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
..+............+.........+.+.+.+++|...
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 118 (163)
T cd00880 81 FVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCC
Confidence 75555444433333334445556778999999998543
No 106
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.72 E-value=3.6e-08 Score=92.22 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=66.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC------CceecCCCCceeEEEEE--Ec---------------CCcEEEEecCCccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN------VCKVAPIPGETKVWQYI--TL---------------TKRIFLIDCPGVVY 363 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~------~~~vs~~pg~T~~~~~~--~~---------------~~~i~liDtPGi~~ 363 (457)
++|+++|.+|+|||||+|+|++.. ....+..+|+|...... .+ ...+.++||||...
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 579999999999999999999731 11233356777654321 11 34789999999743
Q ss_pred CC-----CCCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 364 QN-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 364 ~~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
-. ....+|.++..++..+...........++...+.+.+...+++|..
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~ 133 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLI 133 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 11 1134577777555554443222222234455577889999999964
No 107
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.71 E-value=5.3e-08 Score=89.16 Aligned_cols=104 Identities=18% Similarity=0.111 Sum_probs=66.6
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceec---------------CCCCceeEEEEEEc---CCcEEEEecCCcccCCCC--
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVA---------------PIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-- 367 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs---------------~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-- 367 (457)
+|+++|.+|+|||||+|+|++....... ...|+|.......+ ...+.|+||||.......
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999886554322 12345544332222 346899999997643211
Q ss_pred ---CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
..+|.++..+...+............+.....+.+...+++|..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~ 127 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRV 127 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCc
Confidence 35677777555443333333333444555678899999999864
No 108
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=98.70 E-value=3.4e-08 Score=89.33 Aligned_cols=115 Identities=22% Similarity=0.229 Sum_probs=76.0
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-CC-CCHHHHHHHHHhc---CCCcEEEEe
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GT-RCHHLERHLKEHC---KHKHMILLL 250 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-~s-~~~~l~k~L~~~~---~~K~vIlVL 250 (457)
...+.|+||+...... . ..+....++.+..+|++++|+|+.++. .. ....+.+.+.... .++|+++|+
T Consensus 49 ~~~l~DtpG~~~~~~~-----~--~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~ 121 (170)
T cd01898 49 SFVVADIPGLIEGASE-----G--KGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVL 121 (170)
T ss_pred eEEEEecCcccCcccc-----c--CCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEE
Confidence 3457899997421111 0 234455566778899999999998762 11 1122223333221 368999999
Q ss_pred ecCCCCChhhHHHHHHHHHhc-CCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 251 NKCDLVPAWATKGWLRVLSKE-YPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 251 NKiDLvp~~~~~~wl~~l~~~-~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
||+|+.+......|+..+... .....+.+|++++.|+++|++.|.+.
T Consensus 122 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 122 NKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred EchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhh
Confidence 999998876666666655544 24456788999999999999887653
No 109
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.69 E-value=4e-08 Score=99.88 Aligned_cols=70 Identities=29% Similarity=0.406 Sum_probs=52.0
Q ss_pred EEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE----EE-------------------c----CCcEEEEecCCc
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY----IT-------------------L----TKRIFLIDCPGV 361 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~----~~-------------------~----~~~i~liDtPGi 361 (457)
|++||.||||||||+|+|++... .++++|++|.+... +. . .-.+.|+||||+
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-cccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 58999999999999999999875 88999999865432 10 0 125899999999
Q ss_pred ccCCCC------------CccceEEEeccc
Q 012726 362 VYQNKD------------SETDIVLKGVVR 379 (457)
Q Consensus 362 ~~~~~~------------~e~dlvL~gvv~ 379 (457)
+..... .++|++++.+..
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~ 109 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDA 109 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeC
Confidence 754322 357888775444
No 110
>COG3596 Predicted GTPase [General function prediction only]
Probab=98.68 E-value=4.6e-08 Score=96.09 Aligned_cols=106 Identities=23% Similarity=0.243 Sum_probs=75.2
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCce----eEEEEEEcCCcEEEEecCCcccCCCC-----------
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET----KVWQYITLTKRIFLIDCPGVVYQNKD----------- 367 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T----~~~~~~~~~~~i~liDtPGi~~~~~~----------- 367 (457)
...+++|.++|.+|+||||+||+|+......++.++-+| ..++.+.. ..+.|+||||+......
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHH
Confidence 457899999999999999999999977776777655433 34555544 78999999999875432
Q ss_pred -CccceEEEecccc-CCcccHHHHHHHHHHhcC-cceehhhcCCC
Q 012726 368 -SETDIVLKGVVRV-TNLEDAAEHIGEVLKRVK-KEHLKRAYKIK 409 (457)
Q Consensus 368 -~e~dlvL~gvv~~-~~l~~~~~~i~~~L~~~~-~~~l~~~y~i~ 409 (457)
.+.|++|..+... ..+.-++..+.+++-.+. ++.|.+.++.|
T Consensus 115 l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D 159 (296)
T COG3596 115 LPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQAD 159 (296)
T ss_pred hhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhh
Confidence 3578777633332 234555666666666555 77787777766
No 111
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.68 E-value=8.5e-08 Score=101.11 Aligned_cols=109 Identities=16% Similarity=0.141 Sum_probs=73.7
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCcee------------------------cC------CCCceeEEEEEEc---
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVCKV------------------------AP------IPGETKVWQYITL--- 349 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~v------------------------s~------~pg~T~~~~~~~~--- 349 (457)
.++.++|+++|.+|+|||||+|+|+....... .+ .+|+|++.....+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 45679999999999999999999984322111 11 5899988765554
Q ss_pred CCcEEEEecCCcccCCC-----CCccceEEEeccccC--CcccHHHHHHHHHHhcCc-ceehhhcCCCCC
Q 012726 350 TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVT--NLEDAAEHIGEVLKRVKK-EHLKRAYKIKDW 411 (457)
Q Consensus 350 ~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~--~l~~~~~~i~~~L~~~~~-~~l~~~y~i~~~ 411 (457)
+..+.|+||||...... ...+|.++..++..+ .+.........++...+. +.+...||+|-.
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~ 152 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV 152 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 34789999999643211 135788888666655 443333334445555553 577899999954
No 112
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.66 E-value=1.1e-07 Score=85.20 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=71.3
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEcC---CcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
+|+++|.+|||||||+|+|++.... .+..|++|.++.. +..+ -.+.++||||-..... -..+++++..+
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFD-NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCC-ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999987763 3556666655432 2222 2578999999543211 13566666533
Q ss_pred cccCC---cccHHHHHHHHHHhcC--cceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 378 VRVTN---LEDAAEHIGEVLKRVK--KEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~~---l~~~~~~i~~~L~~~~--~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
+..+ +.+...++..+..+.. .+.+...+++|..+. ..+....++...+
T Consensus 81 -d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~ 136 (161)
T cd01861 81 -DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELN 136 (161)
T ss_pred -ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhC
Confidence 3333 3333344444444444 678889999986332 2334455555544
No 113
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=98.66 E-value=2e-07 Score=83.39 Aligned_cols=106 Identities=17% Similarity=0.106 Sum_probs=69.7
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|++|.. ++...+...+..+|++++|+|+++.+..........+.. ...+|+|+|+||+|+
T Consensus 52 ~~~~~DtpG~~--------------~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~~~~ilv~NK~Dl 116 (164)
T cd04171 52 RLGFIDVPGHE--------------KFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGIKRGLVVLTKADL 116 (164)
T ss_pred EEEEEECCChH--------------HHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCCCcEEEEEECccc
Confidence 34467888863 223445567789999999999987544333332233332 223599999999999
Q ss_pred CChhh----HHHHHHHHHhc--CCeeEEEeeccCCCChHHHHHHHHH
Q 012726 256 VPAWA----TKGWLRVLSKE--YPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 256 vp~~~----~~~wl~~l~~~--~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
.+... ...+.+.+... ....++++||+++.|+++|++.|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 117 VDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred cCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence 86532 23344444432 2356788999999999999888753
No 114
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=98.66 E-value=3.9e-08 Score=103.59 Aligned_cols=157 Identities=19% Similarity=0.229 Sum_probs=104.7
Q ss_pred hhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh
Q 012726 161 DGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH 240 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~ 240 (457)
..|.+|..+.|++....+.+....+. ++..+..++--++..|+|..+.+.+..+.+...+.
T Consensus 76 ~~cpgc~~l~~~~~~~~~~v~~~~y~-----------------k~~~~~~~~~~~~~~vvd~~d~p~~i~p~~~~~v~-- 136 (572)
T KOG1249|consen 76 IVCPGCGFLEHMRAALAVPVVPGEYK-----------------KEKSEKQENPALARKVVDLSDEPCSIDPLLTNDVG-- 136 (572)
T ss_pred ccCCcchHHHHhhhhccCccChhhhh-----------------hhhhhhhhcccceEEeeecccCccccccchhhccc--
Confidence 45999999998887654433322222 22233344445678888887777666665555553
Q ss_pred cCCCcEEEEeecCCCCChhhHHHHHHHHHhc--------------CCee----EEEeeccCCCChHHHHHHHHHHHHhhc
Q 012726 241 CKHKHMILLLNKCDLVPAWATKGWLRVLSKE--------------YPSL----AFHASINKSFGKGSLLSVLRQFARLKS 302 (457)
Q Consensus 241 ~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~--------------~p~~----~f~iSa~~~~Gi~~Li~~L~~~~~~~~ 302 (457)
.+..++++||+||+|....--..+.+... +|.. +..+|++.+.|+.+|+-.|.......
T Consensus 137 --~~~~~v~~n~vdl~p~d~~~~~c~rc~~l~~~~~vk~~~~en~~p~~~f~~~~~~r~ktgyg~eeLI~~lvd~~df~- 213 (572)
T KOG1249|consen 137 --SPRLFVDGNKVDLLPKDSRPGYCQRCHSLLHYGMIKAGGGENLNPDFDFDHVDLIRAKTGYGIEELIVMLVDIVDFR- 213 (572)
T ss_pred --CCceEeeccccccccccccchHHHHHHhhcccceeecccccCCCcccchhhhhhhhhhhcccHHHHHHHhhheeecc-
Confidence 35579999999999876522222222211 2211 22357888999999999887665433
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCc-----------eecCCCCceeE
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVC-----------KVAPIPGETKV 343 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~-----------~vs~~pg~T~~ 343 (457)
-.+..+|++||||||++|+|+....| ++++.||||..
T Consensus 214 ----Gdf~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtls 261 (572)
T KOG1249|consen 214 ----GDFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTLS 261 (572)
T ss_pred ----CceeeeeecccchhhHHHHHhhhccccccccceeeeeecccCCccccc
Confidence 34899999999999999999987655 57888998853
No 115
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=98.66 E-value=1e-07 Score=84.83 Aligned_cols=113 Identities=21% Similarity=0.165 Sum_probs=74.9
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||+....... ....++...+.. +.+|++|+|+|+.++.. ...+...+.. .++|+|+|+||+|+
T Consensus 44 ~~~liDtpG~~~~~~~~-----~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~--~~~~~~~~~~--~~~~~iiv~NK~Dl 113 (158)
T cd01879 44 EIEIVDLPGTYSLSPYS-----EDEKVARDFLLG-EKPDLIVNVVDATNLER--NLYLTLQLLE--LGLPVVVALNMIDE 113 (158)
T ss_pred EEEEEECCCccccCCCC-----hhHHHHHHHhcC-CCCcEEEEEeeCCcchh--HHHHHHHHHH--cCCCEEEEEehhhh
Confidence 34578999975432111 112344443333 69999999999987532 2333333433 37999999999999
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.+......+.+.+.......++.+|+.++.|+.+|++.|.+++
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 114 AEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred cccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 8765444445555554455678899999999999998887653
No 116
>CHL00071 tufA elongation factor Tu
Probab=98.65 E-value=8.9e-08 Score=100.58 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=76.0
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCc-------eecC--------CCCceeEEEEEEc---CCcEEEEecCCcccC
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVC-------KVAP--------IPGETKVWQYITL---TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~-------~vs~--------~pg~T~~~~~~~~---~~~i~liDtPGi~~~ 364 (457)
.+..++|+++|.+|+|||||+|+|++.... ..+. .+|+|.+...... +.++.|+||||....
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~ 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence 356799999999999999999999964221 1111 2788877543333 346899999995422
Q ss_pred CC-----CCccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCC
Q 012726 365 NK-----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDW 411 (457)
Q Consensus 365 ~~-----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~ 411 (457)
-. ...+|+++..++..+.+......+..++...+.+ .+...+++|..
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~ 141 (409)
T CHL00071 89 VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV 141 (409)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence 11 1467888887777666766555666677777777 56789999964
No 117
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.65 E-value=9.9e-08 Score=87.02 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=63.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------CccceEEEecc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD---------SETDIVLKGVV 378 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~---------~e~dlvL~gvv 378 (457)
+|+++|.||||||||+|+|.+.... +..|....+ ... .++||||....... ..+|+++..++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~~~~~~v~~---~~~-~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d 73 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----ARKTQAVEF---NDK-GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHG 73 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----CccceEEEE---CCC-CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEe
Confidence 6999999999999999999986531 122322222 111 27999998543321 36788888665
Q ss_pred ccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHHcCC
Q 012726 379 RVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGK 427 (457)
Q Consensus 379 ~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r~g~ 427 (457)
..+........+..+ ...++.+...+++|-.....+-+...+.+.|+
T Consensus 74 ~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~ 120 (158)
T PRK15467 74 ANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVAATRKLLLETGF 120 (158)
T ss_pred CCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHHHHHHHHHHcCC
Confidence 543321111122211 12456788889998533223334455566665
No 118
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.65 E-value=1.1e-07 Score=86.33 Aligned_cols=31 Identities=32% Similarity=0.371 Sum_probs=25.3
Q ss_pred EEEeecCCCchHHHHHHHhCCCCceecCCCC
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPG 339 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg 339 (457)
|+|+|..++|||||||+|+|.....++..|.
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~ 31 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPC 31 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSST
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCccccccc
Confidence 7899999999999999999987666555443
No 119
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=98.65 E-value=1.4e-09 Score=99.55 Aligned_cols=150 Identities=17% Similarity=0.163 Sum_probs=90.3
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
.++|+.++..|+.+.|.+ ++ =.+++..+.+ +..+.- .+...+..++|+||+..+... ...+++
T Consensus 7 G~PNvGKStLfN~Ltg~~-~~-v~n~pG~Tv~--------~~~g~~--~~~~~~~~lvDlPG~ysl~~~-----s~ee~v 69 (156)
T PF02421_consen 7 GNPNVGKSTLFNALTGAK-QK-VGNWPGTTVE--------KKEGIF--KLGDQQVELVDLPGIYSLSSK-----SEEERV 69 (156)
T ss_dssp ESTTSSHHHHHHHHHTTS-EE-EEESTTSSSE--------EEEEEE--EETTEEEEEEE----SSSSSS-----SHHHHH
T ss_pred CCCCCCHHHHHHHHHCCC-ce-ecCCCCCCee--------eeeEEE--EecCceEEEEECCCcccCCCC-----CcHHHH
Confidence 578899999999999976 22 1233333322 111111 112344567899998644222 112444
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+... -+..|+|+.|+||... .++..+...+.+ -++|+|+|+||+|++.+....--.+.|++.....++++||.
T Consensus 70 ~~~~l~-~~~~D~ii~VvDa~~l--~r~l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~ 144 (156)
T PF02421_consen 70 ARDYLL-SEKPDLIIVVVDATNL--ERNLYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSAR 144 (156)
T ss_dssp HHHHHH-HTSSSEEEEEEEGGGH--HHHHHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTT
T ss_pred HHHHHh-hcCCCEEEEECCCCCH--HHHHHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeC
Confidence 433322 4789999999999753 344445555554 38999999999999866533222344555555667888999
Q ss_pred CCCChHHHHHHH
Q 012726 283 KSFGKGSLLSVL 294 (457)
Q Consensus 283 ~~~Gi~~Li~~L 294 (457)
++.|+++|.+.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999998765
No 120
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.64 E-value=2.6e-07 Score=81.87 Aligned_cols=113 Identities=25% Similarity=0.297 Sum_probs=83.2
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+...... . ...+.......+..+|++++|+|+.++.......+.+.+... +.|.++|+||+|+.
T Consensus 53 ~~liDtpG~~~~~~~-~-----~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~--~~~~iiv~nK~Dl~ 124 (168)
T cd04163 53 IIFVDTPGIHKPKKK-L-----GERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKS--KTPVILVLNKIDLV 124 (168)
T ss_pred EEEEECCCCCcchHH-H-----HHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHh--CCCEEEEEEchhcc
Confidence 346788886432111 0 022344556678999999999999998766666666666542 68999999999998
Q ss_pred -ChhhHHHHHHHHHhcCC-eeEEEeeccCCCChHHHHHHHHHH
Q 012726 257 -PAWATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 257 -p~~~~~~wl~~l~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
.......+...+....+ ..++.+|+.++.|+++|.+.|.++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 125 KDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKY 167 (168)
T ss_pred ccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhh
Confidence 45566777777777664 567888999999999999998764
No 121
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.62 E-value=1.8e-07 Score=82.23 Aligned_cols=104 Identities=13% Similarity=0.079 Sum_probs=64.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++|+++|.||||||||+|+|.+...... .+..|.+.....+..+ ..+.++||||...... -..+|.++..+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 4799999999999999999998776544 3344444433333332 3578999999753211 14567777644
Q ss_pred cccC--CcccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
...+ .+......+..++... ..+.+...+++|.
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~ 117 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDL 117 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence 4432 1222233333344433 3678888899885
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.62 E-value=2.8e-07 Score=85.75 Aligned_cols=115 Identities=15% Similarity=0.224 Sum_probs=71.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
.+.++|+++|.+|||||||+|.|.+.....+.+..+.|. ..+.. +.++.++||||..... .-..++.++..+
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vv 92 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLV 92 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEE
Confidence 346899999999999999999999876544444444332 12222 3468899999975422 114677777755
Q ss_pred cccCC--cccHHHHHHHHHHh---cCcceehhhcCCCCC--CCHHHHHHH
Q 012726 378 VRVTN--LEDAAEHIGEVLKR---VKKEHLKRAYKIKDW--VDENDFLLQ 420 (457)
Q Consensus 378 v~~~~--l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~--~~~~efL~~ 420 (457)
+..+. +......+..++.. .+.+.+...+++|-. .+.+++.+.
T Consensus 93 D~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~ 142 (184)
T smart00178 93 DAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYA 142 (184)
T ss_pred ECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHH
Confidence 54322 22233344444432 356789999999843 244444433
No 123
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.61 E-value=2e-07 Score=85.31 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=73.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...++|++|.... .......+..+|.+++|+|+.++.......+...+.. .++|+++|+||+|+
T Consensus 63 ~~~liDtpG~~~~--------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~--~~~~i~iv~nK~D~ 126 (189)
T cd00881 63 RVNFIDTPGHEDF--------------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE--GGLPIIVAINKIDR 126 (189)
T ss_pred EEEEEeCCCcHHH--------------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH--CCCCeEEEEECCCC
Confidence 3457889987532 2234455678999999999988775544444445443 47999999999999
Q ss_pred CChhhHH---HHH-HHHHhc-------------CCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 256 VPAWATK---GWL-RVLSKE-------------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 256 vp~~~~~---~wl-~~l~~~-------------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
....... .++ +.+... ....+|.+||+++.|+.++++.|.++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 127 VGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cchhcHHHHHHHHHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 8643222 222 222221 2355788899999999999999887653
No 124
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=98.61 E-value=1e-07 Score=83.15 Aligned_cols=105 Identities=23% Similarity=0.257 Sum_probs=64.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEcC---CcEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|+|||||+|+|.+.. ...+..|++|.+... +..+ ..+.++||||...... ...++..+..
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 689999999999999999999987 677777888876654 3333 3578899999543311 1123333332
Q ss_pred cccc---CCcccHH-HHHHHHHHhc--CcceehhhcCCCCCC
Q 012726 377 VVRV---TNLEDAA-EHIGEVLKRV--KKEHLKRAYKIKDWV 412 (457)
Q Consensus 377 vv~~---~~l~~~~-~~i~~~L~~~--~~~~l~~~y~i~~~~ 412 (457)
+.-. ....+.. .+...+...+ ..+.+...+++|...
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 122 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRD 122 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCc
Confidence 2221 2222322 2222222222 457888899998543
No 125
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.61 E-value=1.5e-07 Score=91.89 Aligned_cols=120 Identities=17% Similarity=0.177 Sum_probs=80.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc--e---ec------C------CCCceeEEEEE---EcCCcEEEEecCCcccCCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC--K---VA------P------IPGETKVWQYI---TLTKRIFLIDCPGVVYQNKD 367 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~--~---vs------~------~pg~T~~~~~~---~~~~~i~liDtPGi~~~~~~ 367 (457)
+|+++|.+|+|||||+++|+..... . +. + .-|.|...... .-+.++.++||||.......
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 4799999999999999999853211 1 11 1 11222222212 12447999999998643211
Q ss_pred -----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 368 -----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 368 -----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
..+|.++..+...+.+......+...+.+.+.+.+...||+|.. .+.++.++.+..+.|.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~ 146 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEKVYQEIKEKLSS 146 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHHHHHHHHHHHCC
Confidence 34577777666666665555667777778888999999999964 3677888888777764
No 126
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=98.61 E-value=2.5e-07 Score=84.08 Aligned_cols=117 Identities=20% Similarity=0.209 Sum_probs=70.6
Q ss_pred HHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----
Q 012726 291 LSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN----- 365 (457)
Q Consensus 291 i~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~----- 365 (457)
++.++++-+. ...++|+++|.+|||||||+|+|.+.......+..|.+...... .+..+.++||||.....
T Consensus 2 ~~~~~~~~~~---~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~-~~~~~~~~D~~G~~~~~~~~~~ 77 (173)
T cd04155 2 LSLLRKLRKS---SEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQS-DGFKLNVWDIGGQRAIRPYWRN 77 (173)
T ss_pred hhHHHHhhcc---CCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEE-CCEEEEEEECCCCHHHHHHHHH
Confidence 3455554432 34789999999999999999999997665555556654332222 24578899999964321
Q ss_pred CCCccceEEEeccccCC--cccHHHHHHHHHHh---cCcceehhhcCCCCC
Q 012726 366 KDSETDIVLKGVVRVTN--LEDAAEHIGEVLKR---VKKEHLKRAYKIKDW 411 (457)
Q Consensus 366 ~~~e~dlvL~gvv~~~~--l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~ 411 (457)
.-..++.++..++..+. +......+..++.. ...+.+...++.|..
T Consensus 78 ~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 128 (173)
T cd04155 78 YFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA 128 (173)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence 11355666664443321 22222333334332 245777888998853
No 127
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=98.61 E-value=1.5e-07 Score=98.35 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=99.0
Q ss_pred cccchhhhhhhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccc-cCCcCCcchHhhhhhh
Q 012726 114 SLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTS-AEGVEGDGFRDLVRHT 192 (457)
Q Consensus 114 ~ll~~~~~~~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q-~~~~d~~g~~~~~~~~ 192 (457)
-|+.|..-..++|+.++..++.+.+.+. +=...+..++.-. +-..+..+.+ .+++|+||++.....
T Consensus 157 k~iadValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~----------~Giv~~~~~~~i~~vDtPGi~~~a~~- 223 (390)
T PRK12298 157 KLLADVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPN----------LGVVRVDDERSFVVADIPGLIEGASE- 223 (390)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcE----------EEEEEeCCCcEEEEEeCCCccccccc-
Confidence 3444555556777777777777766432 1000111111110 0011122223 678999998643211
Q ss_pred hhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCC----CHHHHHHHHHhc---CCCcEEEEeecCCCCChhhHHHHH
Q 012726 193 MFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTR----CHHLERHLKEHC---KHKHMILLLNKCDLVPAWATKGWL 265 (457)
Q Consensus 193 l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~----~~~l~k~L~~~~---~~K~vIlVLNKiDLvp~~~~~~wl 265 (457)
...+.....+.++.+|+||+|+|+...-... ...+.+.+.... .++|.|+|+||+|+.+.......+
T Consensus 224 ------~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l 297 (390)
T PRK12298 224 ------GAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERA 297 (390)
T ss_pred ------hhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHH
Confidence 0223344456789999999999986221111 122333333211 368999999999998765555555
Q ss_pred HHHHhcCC--eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 266 RVLSKEYP--SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 266 ~~l~~~~p--~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+.+.+.++ ..++++||+++.|+++|++.|.+++++
T Consensus 298 ~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 298 KAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE 334 (390)
T ss_pred HHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence 55544433 246888999999999999999988764
No 128
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.60 E-value=2.5e-07 Score=89.53 Aligned_cols=105 Identities=15% Similarity=0.064 Sum_probs=73.1
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhh--ccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~--~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
..++|+||.... .+.+...+. .+|++++|+|+..++...+..+..++.. .++|+|+|+||+|
T Consensus 86 i~liDtpG~~~~--------------~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~--~~ip~ivvvNK~D 149 (224)
T cd04165 86 VTFIDLAGHERY--------------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALA--LNIPVFVVVTKID 149 (224)
T ss_pred EEEEECCCcHHH--------------HHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEECcc
Confidence 346788886432 333444453 6899999999998877666667777665 3789999999999
Q ss_pred CCChhhHHHHHH----HHHhc-------------------------CCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 255 LVPAWATKGWLR----VLSKE-------------------------YPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 255 Lvp~~~~~~wl~----~l~~~-------------------------~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
+++......-++ .+... .-..+|.+|+.+|.|++.|.+.|..+
T Consensus 150 ~~~~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~l 221 (224)
T cd04165 150 LAPANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNLL 221 (224)
T ss_pred ccCHHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHhc
Confidence 987654433333 33310 01257888999999999998887643
No 129
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=98.60 E-value=2.1e-07 Score=102.03 Aligned_cols=95 Identities=26% Similarity=0.302 Sum_probs=66.0
Q ss_pred ecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c-CCcEEEEecCCcccCCCC-------------CccceEEEe
Q 012726 313 GYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L-TKRIFLIDCPGVVYQNKD-------------SETDIVLKG 376 (457)
Q Consensus 313 G~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~-~~~i~liDtPGi~~~~~~-------------~e~dlvL~g 376 (457)
|.||||||||+|+|++... .+++.||+|.+..... . +.++.++||||....... ...|+++..
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 8999999999999999865 8999999998765432 2 457899999998653221 246777774
Q ss_pred ccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 377 VVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
++. .+++.. .+....+.+.+.+.+...|++|.
T Consensus 80 vDa-t~ler~-l~l~~ql~~~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 80 VDA-SNLERN-LYLTLQLLELGIPMILALNLVDE 111 (591)
T ss_pred ecC-Ccchhh-HHHHHHHHhcCCCEEEEEehhHH
Confidence 443 344332 23333344557788888888873
No 130
>PLN03127 Elongation factor Tu; Provisional
Probab=98.59 E-value=3.3e-07 Score=97.34 Aligned_cols=110 Identities=15% Similarity=0.130 Sum_probs=77.9
Q ss_pred cCccceEEEEeecCCCchHHHHHHHhCC------CCcee---------cCCCCceeEEEEEEc---CCcEEEEecCCccc
Q 012726 302 SDKQAISVGFVGYPNVGKSSVINTLRTK------NVCKV---------APIPGETKVWQYITL---TKRIFLIDCPGVVY 363 (457)
Q Consensus 302 ~~~~~i~v~vvG~pNvGKSSliN~L~~~------~~~~v---------s~~pg~T~~~~~~~~---~~~i~liDtPGi~~ 363 (457)
..+..++|+++|++|+|||||+++|++. ..... ...+|+|.+.....+ +.++.|+||||...
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence 3567899999999999999999999732 11111 113789987655544 34789999999753
Q ss_pred CCC-----CCccceEEEeccccCCcccHHHHHHHHHHhcCcce-ehhhcCCCCC
Q 012726 364 QNK-----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEH-LKRAYKIKDW 411 (457)
Q Consensus 364 ~~~-----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~-l~~~y~i~~~ 411 (457)
.-. ...+|+++..+...+.+......+..++...+.+. +...||+|-.
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv 190 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV 190 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence 211 14578888877766666555666667788888775 6789999964
No 131
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=98.59 E-value=3.2e-07 Score=85.80 Aligned_cols=108 Identities=20% Similarity=0.144 Sum_probs=71.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||.+ .+++..+..+..+|.+++|+|+.+...........+... .++|+++|+||+|+
T Consensus 69 ~~~i~DtpG~~--------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~--~~~~~iiv~NK~Dl 132 (192)
T cd01889 69 QITLVDCPGHA--------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI--LCKKLIVVLNKIDL 132 (192)
T ss_pred eEEEEECCCcH--------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECccc
Confidence 44567888863 345666777888999999999987543322222222221 36899999999999
Q ss_pred CChhh----HHHHHHHHHhc------CCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 256 VPAWA----TKGWLRVLSKE------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 256 vp~~~----~~~wl~~l~~~------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+.... ...+.+.+... ....++++||+++.|+++|++.|....+
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~ 186 (192)
T cd01889 133 IPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV 186 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence 85432 22333332221 2345788999999999999999876554
No 132
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.58 E-value=2.2e-07 Score=91.86 Aligned_cols=120 Identities=19% Similarity=0.195 Sum_probs=77.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCce--ecC-CCCc--------------eeEE--EEEE-cCCcEEEEecCCcccCCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCK--VAP-IPGE--------------TKVW--QYIT-LTKRIFLIDCPGVVYQNKD 367 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~--vs~-~pg~--------------T~~~--~~~~-~~~~i~liDtPGi~~~~~~ 367 (457)
+|+++|.+|+|||||+|+|+...... .+. ..|+ |... ..+. -+..+.|+||||.......
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 47999999999999999997532111 111 1122 2111 1112 2347899999998642211
Q ss_pred -----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 368 -----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 368 -----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
..+|.++..+............+...+...+.+.+...|++|.. .+.++.++.+....|.
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~ 146 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQEAFGR 146 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHHHhCC
Confidence 35677777665555444444555566777788899999999964 4567788888777664
No 133
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=98.58 E-value=2.4e-07 Score=84.69 Aligned_cols=107 Identities=20% Similarity=0.146 Sum_probs=69.2
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
.+..+.|++|..+. .......+..+|++|+|+|+.++...........+.. .++|+|+|+||+|
T Consensus 67 ~~~~l~Dt~G~~~~--------------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~--~~~~iiiv~NK~D 130 (179)
T cd01890 67 YLLNLIDTPGHVDF--------------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE--NNLEIIPVINKID 130 (179)
T ss_pred EEEEEEECCCChhh--------------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH--cCCCEEEEEECCC
Confidence 34457888887532 2233456778999999999988765433332222222 4789999999999
Q ss_pred CCChhh---HHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 255 LVPAWA---TKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 255 Lvp~~~---~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+.+... ...+.+.+. ..+..+|.+||.++.|+++|++.|.+.+
T Consensus 131 l~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 131 LPSADPERVKQQIEDVLG-LDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred CCcCCHHHHHHHHHHHhC-CCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 964321 122222221 1123468899999999999999887654
No 134
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.58 E-value=4.3e-07 Score=83.49 Aligned_cols=117 Identities=20% Similarity=0.132 Sum_probs=71.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----CCCccceEEEeccc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVR 379 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~ 379 (457)
...+|+++|.+|||||||++.|+........+..|.+.....+ -+..+.++||||..... .-..++.++..++.
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~ 92 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVY-KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDS 92 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEE-CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEEC
Confidence 3578999999999999999999876554455555544322111 13478999999974221 12467777775543
Q ss_pred cCC--cccHHHHHHHHHHhc---CcceehhhcCCCCCC--CHHHHHHHHH
Q 012726 380 VTN--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV--DENDFLLQLC 422 (457)
Q Consensus 380 ~~~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~--~~~efL~~la 422 (457)
.+. +......+..++... ..+.+...+|+|-.. +.+++.+.++
T Consensus 93 s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~ 142 (174)
T cd04153 93 TDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLG 142 (174)
T ss_pred CCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhC
Confidence 321 222223344444432 357888999998533 4455544443
No 135
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.58 E-value=3.9e-07 Score=80.32 Aligned_cols=102 Identities=22% Similarity=0.213 Sum_probs=67.5
Q ss_pred CcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh
Q 012726 179 GVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (457)
Q Consensus 179 ~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~ 258 (457)
..|++|..... ...++.+...+.++|++|+|+|+.++.+.....+.+.+ .+|+|+|+||+||.+.
T Consensus 39 ~iDt~G~~~~~----------~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~-----~~p~ilv~NK~Dl~~~ 103 (142)
T TIGR02528 39 AIDTPGEYVEN----------RRLYSALIVTAADADVIALVQSATDPESRFPPGFASIF-----VKPVIGLVTKIDLAEA 103 (142)
T ss_pred eecCchhhhhh----------HHHHHHHHHHhhcCCEEEEEecCCCCCcCCChhHHHhc-----cCCeEEEEEeeccCCc
Confidence 57888863111 22344555568999999999999999876654443322 3699999999999764
Q ss_pred hhHHHHHH-HHHhcCCeeEEEeeccCCCChHHHHHHHH
Q 012726 259 WATKGWLR-VLSKEYPSLAFHASINKSFGKGSLLSVLR 295 (457)
Q Consensus 259 ~~~~~wl~-~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~ 295 (457)
.......+ ++........|.+||+++.|+++|.+.|.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 104 DVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 32222222 22332333567889999999999887763
No 136
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=98.57 E-value=6.5e-07 Score=80.22 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=69.4
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh--hhHHHHHHHHHhcCC----eeEEE
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVLSKEYP----SLAFH 278 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~--~~~~~wl~~l~~~~p----~~~f~ 278 (457)
.....+..+|++++|+|+.++.+.....+.+.+.. .++|+++|+||+|+.+. .....+.+.+.+..+ ..++.
T Consensus 77 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 77 RTLKAIERADVVLLVIDATEGITEQDLRIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 34566789999999999999887666555555543 37899999999999876 455566666665543 45788
Q ss_pred eeccCCCChHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~ 296 (457)
+||+++.|+.++.+.+.+
T Consensus 155 ~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 155 ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EeccCCCCHHHHHHHHHH
Confidence 899999999999888765
No 137
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.57 E-value=2.4e-07 Score=86.74 Aligned_cols=114 Identities=14% Similarity=0.114 Sum_probs=67.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC-Ccee--------------cCCCCceeEEEEEE---cCCcEEEEecCCcccCCCC-
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN-VCKV--------------APIPGETKVWQYIT---LTKRIFLIDCPGVVYQNKD- 367 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~-~~~v--------------s~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~~- 367 (457)
.+|+++|.+|||||||+|+|+... .... ....|+|....... -...+.++||||.......
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 369999999999999999998621 1110 11245554333222 2347899999997542211
Q ss_pred ----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHH
Q 012726 368 ----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQ 420 (457)
Q Consensus 368 ----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~ 420 (457)
..+|.++..+...+........+...+...+.+.+.+.|++|-. ....+.++.
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~ 140 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDE 140 (194)
T ss_pred HHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHH
Confidence 35677777555444332222333333444567788899999953 333334433
No 138
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.56 E-value=2.7e-07 Score=103.12 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=85.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCc-----eecC------------CCCceeEEEEEE---cCCcEEEEecCCcccCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVC-----KVAP------------IPGETKVWQYIT---LTKRIFLIDCPGVVYQNK 366 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~-----~vs~------------~pg~T~~~~~~~---~~~~i~liDtPGi~~~~~ 366 (457)
.+|+++|.+|+|||||+|+|+..... .+.+ ..|+|.+..... -+.++.|+||||......
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~~ 90 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFTV 90 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchhH
Confidence 47999999999999999999742211 1211 356776543322 245899999999975432
Q ss_pred C-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 367 D-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 367 ~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
. ..+|.++..+...+.+......+...+...+.+.+...||+|-. .+.+++++.+..+.+.
T Consensus 91 ~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~ 157 (689)
T TIGR00484 91 EVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRVVNQIKQRLGA 157 (689)
T ss_pred HHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 2 35688888676666665555666667777788899999999954 3567788888887765
No 139
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=98.56 E-value=1.7e-07 Score=95.88 Aligned_cols=116 Identities=22% Similarity=0.213 Sum_probs=78.1
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC----HHHHHHHHHh---cCCCcEEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC----HHLERHLKEH---CKHKHMIL 248 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~----~~l~k~L~~~---~~~K~vIl 248 (457)
+..+.|+||+.....+ .+.+-...++.++.+|++|+|+|+.++-.+.. ..+.+.|... ..++|+|+
T Consensus 206 ~~~i~D~PGli~~a~~-------~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~II 278 (329)
T TIGR02729 206 SFVIADIPGLIEGASE-------GAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIV 278 (329)
T ss_pred EEEEEeCCCcccCCcc-------cccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEE
Confidence 4456888987532211 12344555677899999999999986522111 1122223221 13689999
Q ss_pred EeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 249 LLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 249 VLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
|+||+|+.+......+.+.+.+.....++.+||.++.|+++|++.|.+.+
T Consensus 279 V~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 279 VLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred EEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence 99999998776556666666655555678889999999999999987654
No 140
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.56 E-value=2.2e-07 Score=85.11 Aligned_cols=105 Identities=18% Similarity=0.191 Sum_probs=67.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----CCCccceEEEeccc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVR 379 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~ 379 (457)
..++|+++|.+|||||||+|+|.+.....+.+..|.......+. ...+.++||||..... .-..++.++..++.
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 91 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYE-GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDS 91 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEEC
Confidence 46889999999999999999999876655555555332211111 3467999999974321 11356777764444
Q ss_pred cCC--cccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 380 VTN--LEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 380 ~~~--l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
.+. +.+....+..++.. ...+.+...+++|-
T Consensus 92 ~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 127 (173)
T cd04154 92 SDRLRLDDCKRELKELLQEERLAGATLLILANKQDL 127 (173)
T ss_pred CCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECccc
Confidence 332 33333444455442 34678889999984
No 141
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.56 E-value=2.1e-07 Score=83.39 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=64.4
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----CCCccceEEEeccccCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTN 382 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~ 382 (457)
+|+++|.+|||||||+|++.+.......+..|.+.......-...+.++||||..... .-..++.++..++..+.
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 4799999999999999999988765555544443221111112368999999975321 12456777765443322
Q ss_pred --cccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 383 --LEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 383 --l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
+......+..++.. .+.+.+...+|.|-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 113 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECccc
Confidence 22333344445443 35678999999984
No 142
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=98.55 E-value=5.1e-07 Score=82.34 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=73.5
Q ss_pred CcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh
Q 012726 179 GVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (457)
Q Consensus 179 ~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~ 258 (457)
..|+||+.... .++.+++...+..+|+||+|+|+.++.......+.+. ..++|+++++||+|+.+.
T Consensus 41 ~iDtpG~~~~~----------~~~~~~~~~~~~~ad~il~v~d~~~~~s~~~~~~~~~----~~~~~ii~v~nK~Dl~~~ 106 (158)
T PRK15467 41 DIDTPGEYFSH----------PRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDI----GVSKRQIAVISKTDMPDA 106 (158)
T ss_pred cccCCccccCC----------HHHHHHHHHHHhcCCEEEEEEeCCCcccccCHHHHhc----cCCCCeEEEEEccccCcc
Confidence 47899963211 2345666777899999999999987765444333332 236899999999998543
Q ss_pred hhHHHHHHHHHhcCC-eeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 259 WATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 259 ~~~~~wl~~l~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
....+.+.+.+... ..+|.+||+++.|+++|.+.|.+...
T Consensus 107 -~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 107 -DVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred -cHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 23334444443332 35677899999999999999987764
No 143
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.54 E-value=3.8e-07 Score=90.59 Aligned_cols=120 Identities=17% Similarity=0.148 Sum_probs=76.7
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc-----ee----------cCCC------CceeEEE--EEE-cCCcEEEEecCCccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC-----KV----------APIP------GETKVWQ--YIT-LTKRIFLIDCPGVVY 363 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~-----~v----------s~~p------g~T~~~~--~~~-~~~~i~liDtPGi~~ 363 (457)
+|+++|++|+|||||+|+|+..... .+ .+.. |.|.... .+. -+.++.|+||||...
T Consensus 4 ni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 6899999999999999999853211 11 1111 1111111 111 245789999999753
Q ss_pred CCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 364 QNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 364 ~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
.... ..+|.++..+.....+......+...+...+.+.+...|++|.. .+..+.++.+..+.|.
T Consensus 84 f~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~~~~~l~~~l~~ 153 (267)
T cd04169 84 FSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLELLDEIEEELGI 153 (267)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHHHHHHHHHHHCC
Confidence 2211 34677777666655555545566666777778899999999953 3456677888777664
No 144
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.54 E-value=2.2e-07 Score=95.91 Aligned_cols=72 Identities=28% Similarity=0.282 Sum_probs=54.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEcC------------------CcEEEEecCCcccCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITLT------------------KRIFLIDCPGVVYQNK 366 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~~------------------~~i~liDtPGi~~~~~ 366 (457)
+++|+||.||||||||+|+|++.....++++|.||..... +..+ ..+.++|.||++....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 6799999999999999999999886578889999875432 2211 2589999999997643
Q ss_pred C------------CccceEEEecc
Q 012726 367 D------------SETDIVLKGVV 378 (457)
Q Consensus 367 ~------------~e~dlvL~gvv 378 (457)
. ..+|++++.+.
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr 106 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVR 106 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEe
Confidence 2 35677776443
No 145
>PRK00007 elongation factor G; Reviewed
Probab=98.54 E-value=2.4e-07 Score=103.53 Aligned_cols=122 Identities=19% Similarity=0.153 Sum_probs=88.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhC---C--CCceec------------CCCCceeEEEEEE---cCCcEEEEecCCcccCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT---K--NVCKVA------------PIPGETKVWQYIT---LTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~---~--~~~~vs------------~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~ 365 (457)
-.+|+++|.+|+|||||+|+|+. . ....+. ...|+|.+..... -+.++.|+||||.....
T Consensus 10 Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f~ 89 (693)
T PRK00007 10 YRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDFT 89 (693)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHHH
Confidence 35799999999999999999973 2 111122 2467776543222 25689999999986432
Q ss_pred CC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 366 KD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 366 ~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
.+ ..+|.++..++..+.+......+...+...+.+.+...||+|.. .+..++++.+..+.+.
T Consensus 90 ~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~ 157 (693)
T PRK00007 90 IEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYRVVEQIKDRLGA 157 (693)
T ss_pred HHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 21 35688888777777777777778888888888999999999954 4567788888777766
No 146
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.54 E-value=6e-07 Score=81.76 Aligned_cols=121 Identities=13% Similarity=0.025 Sum_probs=68.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
.+|++||.||||||||+|++++...... .+..|.+.....+..+. .+.|+||||-..... -..+|.++..+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~ 84 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVY 84 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999998765333 23334443333333332 678999999532211 13567777644
Q ss_pred cccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+... .+.+...++..+.... +.+.+...+++|-.. -..+-...++...|.
T Consensus 85 d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd01866 85 DITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGL 141 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC
Confidence 4321 1122222222222222 346788889988532 122334556665543
No 147
>PRK12739 elongation factor G; Reviewed
Probab=98.54 E-value=2.1e-07 Score=103.98 Aligned_cols=122 Identities=18% Similarity=0.141 Sum_probs=87.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC-----CCceecC------------CCCceeEEEEEEc---CCcEEEEecCCcccCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK-----NVCKVAP------------IPGETKVWQYITL---TKRIFLIDCPGVVYQN 365 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~-----~~~~vs~------------~pg~T~~~~~~~~---~~~i~liDtPGi~~~~ 365 (457)
-.+|+++|.+|+|||||+|+|+.. ....+.. ..|+|.+.....+ +.++.|+||||.....
T Consensus 8 irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f~ 87 (691)
T PRK12739 8 TRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDFT 87 (691)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHHH
Confidence 457999999999999999999742 1111221 4577765433322 5589999999986432
Q ss_pred CC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 366 KD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 366 ~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
.. ..+|.++..++..+.+......+...+...+.+.|...||+|.. .+.+++++.+....++
T Consensus 88 ~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~i~~~l~~ 155 (691)
T PRK12739 88 IEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFRSVEQIKDRLGA 155 (691)
T ss_pred HHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCC
Confidence 11 35688888777777776666777777888888999999999954 3567788888777765
No 148
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.54 E-value=4.9e-07 Score=85.65 Aligned_cols=98 Identities=16% Similarity=0.116 Sum_probs=67.6
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeec
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNK 252 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNK 252 (457)
..+..++|+||++ .+..++...+..+|++++|+|+..........+...+... ++| +|+++||
T Consensus 64 ~~~i~~iDtPG~~--------------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~--~~~~iIvviNK 127 (195)
T cd01884 64 NRHYAHVDCPGHA--------------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV--GVPYIVVFLNK 127 (195)
T ss_pred CeEEEEEECcCHH--------------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCcEEEEEeC
Confidence 4456788999985 3556778889999999999999887766665666666543 565 7799999
Q ss_pred CCCCChhhHHH-----HHHHHHhc-C---CeeEEEeeccCCCCh
Q 012726 253 CDLVPAWATKG-----WLRVLSKE-Y---PSLAFHASINKSFGK 287 (457)
Q Consensus 253 iDLvp~~~~~~-----wl~~l~~~-~---p~~~f~iSa~~~~Gi 287 (457)
+|+++...... ..+.+... + ...++++||.+|.+.
T Consensus 128 ~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 128 ADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence 99985433222 22223322 2 145778999998874
No 149
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.53 E-value=7.6e-07 Score=79.85 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=69.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|.+..... ..+.+|.+.....+.++ -.+.++||||....... ..+|.++..+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 479999999999999999999866532 55566665444433333 25789999996432211 3567776644
Q ss_pred cccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCC--CCHHHHHHHHHHHcC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDW--VDENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~--~~~~efL~~la~r~g 426 (457)
+..+ .+.....++..+.... +.+.+...+++|.. ....+....+++..+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~ 136 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHN 136 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcC
Confidence 4321 1222222222222322 34568888998843 212233444555554
No 150
>COG2262 HflX GTPases [General function prediction only]
Probab=98.53 E-value=2.8e-07 Score=94.92 Aligned_cols=112 Identities=22% Similarity=0.248 Sum_probs=76.1
Q ss_pred CCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCC
Q 012726 178 EGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDL 255 (457)
Q Consensus 178 ~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDL 255 (457)
.+.||-||.+-.-.. .-..++...+-+..+|++|+|+|+.+|.-..- ..+.+.|.+. ..++|+|+|+||+|+
T Consensus 243 lLtDTVGFI~~LP~~------LV~AFksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~ 316 (411)
T COG2262 243 LLTDTVGFIRDLPHP------LVEAFKSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDL 316 (411)
T ss_pred EEecCccCcccCChH------HHHHHHHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccc
Confidence 345666665433222 24556666777788999999999999932211 1234444442 346899999999999
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
++.... +..+....| ..+.+||.++.|++.|.+.|...++
T Consensus 317 ~~~~~~---~~~~~~~~~-~~v~iSA~~~~gl~~L~~~i~~~l~ 356 (411)
T COG2262 317 LEDEEI---LAELERGSP-NPVFISAKTGEGLDLLRERIIELLS 356 (411)
T ss_pred cCchhh---hhhhhhcCC-CeEEEEeccCcCHHHHHHHHHHHhh
Confidence 876542 223333335 5677899999999999999988775
No 151
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.52 E-value=9.1e-07 Score=79.33 Aligned_cols=120 Identities=12% Similarity=0.001 Sum_probs=67.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
.++|+++|.+|||||||+|++++... +...+.++.+. ....++. .+.++||||......- ..++.++.
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCC--CcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 47899999999999999999987553 23333333321 1122222 4788999996432211 24555555
Q ss_pred ecccc--CCcccHHHHHHHHHHh---cCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRV--TNLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~--~~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++.. +.+.....++..+++. .+.+.+...+++|-.. ...+....+++..|.
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 139 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKI 139 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCC
Confidence 33222 2222333334444432 2457888899998422 122334556665554
No 152
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.52 E-value=3.4e-07 Score=81.97 Aligned_cols=104 Identities=17% Similarity=0.092 Sum_probs=66.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC-----CccceEEEeccccC-
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVT- 381 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~- 381 (457)
+|+++|.+|||||||+|++++.......+..|.+.....+ ....+.++||||....... ..+++++..++...
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~ 79 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEY-KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDR 79 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEE-CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 4899999999999999999988754444445544332221 1347899999997542211 35677777444432
Q ss_pred -CcccHHHHHHHHHHhc---CcceehhhcCCCCCC
Q 012726 382 -NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV 412 (457)
Q Consensus 382 -~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~ 412 (457)
.+..+..++..++... ..+.+...++.|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 80 ERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred HHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 2334444555554532 457788889998543
No 153
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=98.52 E-value=3.7e-07 Score=93.57 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=76.4
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc---CCCcEEEEeec
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC---KHKHMILLLNK 252 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~---~~K~vIlVLNK 252 (457)
.++.|+||+..-... .+.+..+.++.++.+|++|+|+|+.++.+..+ ..+.+.|.... .++|+|+|+||
T Consensus 208 ~~i~D~PGli~ga~~-------~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NK 280 (335)
T PRK12299 208 FVIADIPGLIEGASE-------GAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNK 280 (335)
T ss_pred EEEEeCCCccCCCCc-------cccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEEC
Confidence 456888987532111 13455667778899999999999986542111 12223333211 36899999999
Q ss_pred CCCCChhhH-HHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 253 CDLVPAWAT-KGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLvp~~~~-~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+|+.+.+.. ....+.+.......+|.+||.++.|+++|++.|.+.+..
T Consensus 281 iDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 281 IDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE 329 (335)
T ss_pred cccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 999865432 222232323334567889999999999999999887754
No 154
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.51 E-value=2.5e-07 Score=93.05 Aligned_cols=63 Identities=27% Similarity=0.336 Sum_probs=51.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c------------------CCcEEEEecCCccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L------------------TKRIFLIDCPGVVY 363 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~------------------~~~i~liDtPGi~~ 363 (457)
...+++|+||.|||||||++|+|+..... .+++|.+|.+..... + +..+.++|..|++.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCC-ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 35678999999999999999999998875 999999998764322 1 23578999999998
Q ss_pred CCCC
Q 012726 364 QNKD 367 (457)
Q Consensus 364 ~~~~ 367 (457)
..+.
T Consensus 97 GAs~ 100 (391)
T KOG1491|consen 97 GASA 100 (391)
T ss_pred Cccc
Confidence 7654
No 155
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.51 E-value=3.6e-07 Score=85.37 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=75.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-----------------ecCCCCceeE---EEEE--EcCCcEEEEecCCcc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-----------------VAPIPGETKV---WQYI--TLTKRIFLIDCPGVV 362 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-----------------vs~~pg~T~~---~~~~--~~~~~i~liDtPGi~ 362 (457)
+.++|+++|..++|||||+++|+...... .....|.|.. .... .-...+.++||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 35789999999999999999998533110 0112345543 2333 335689999999975
Q ss_pred cCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 363 YQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 363 ~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
..... ..+|.++..|+..+.+.........++...+.+.+..+||+|..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~ 135 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI 135 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch
Confidence 42211 46788888777777777667777778888888899999999976
No 156
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.51 E-value=1.1e-06 Score=87.73 Aligned_cols=107 Identities=19% Similarity=0.163 Sum_probs=67.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecC--------CCCcee-EEE--EEEcC---CcEEEEecCCcccCCC----
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAP--------IPGETK-VWQ--YITLT---KRIFLIDCPGVVYQNK---- 366 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~--------~pg~T~-~~~--~~~~~---~~i~liDtPGi~~~~~---- 366 (457)
-.++|+++|.+|+|||||||+|++......+. .+.++. ... .+... -++.++||||+.....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 35789999999999999999999987655432 233322 111 12222 2589999999864321
Q ss_pred -----------------------------CCccceEEEeccccC-CcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 367 -----------------------------DSETDIVLKGVVRVT-NLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 367 -----------------------------~~e~dlvL~gvv~~~-~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
+...+++|..+.... .+.+.+..+...|.. ..+.+.+.+++|...
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~ 157 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLT 157 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCC
Confidence 123456666554432 454444444555544 567888999998643
No 157
>PRK00049 elongation factor Tu; Reviewed
Probab=98.51 E-value=5e-07 Score=94.60 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=76.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC------cee---------cCCCCceeEEEEEEc---CCcEEEEecCCcccCC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV------CKV---------APIPGETKVWQYITL---TKRIFLIDCPGVVYQN 365 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~------~~v---------s~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~ 365 (457)
+..++|+++|++++|||||+++|++... ... .-..|+|.+.....+ +.++.|+||||.....
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 5679999999999999999999986311 001 114688877655444 3478999999974221
Q ss_pred -----CCCccceEEEeccccCCcccHHHHHHHHHHhcCccee-hhhcCCCCCC
Q 012726 366 -----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHL-KRAYKIKDWV 412 (457)
Q Consensus 366 -----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l-~~~y~i~~~~ 412 (457)
....+|+++..+...+.+......+..++...+.+.+ ...+++|...
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc
Confidence 1246788888777666666655566677777787875 5789999643
No 158
>PRK12735 elongation factor Tu; Reviewed
Probab=98.51 E-value=4.8e-07 Score=94.67 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=72.8
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCC------CCc-e--------ecCCCCceeEEEEEEc---CCcEEEEecCCcccC
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTK------NVC-K--------VAPIPGETKVWQYITL---TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~------~~~-~--------vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~ 364 (457)
.++.++|+++|.+|+|||||+|+|++. ... . .....|+|.+...... +.++.|+||||....
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY 88 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHH
Confidence 456899999999999999999999862 111 0 1114688877654443 347899999996421
Q ss_pred C-----CCCccceEEEeccccCCcccHHHHHHHHHHhcCccee-hhhcCCCCC
Q 012726 365 N-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHL-KRAYKIKDW 411 (457)
Q Consensus 365 ~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l-~~~y~i~~~ 411 (457)
. ....+|.++..+...+.+.........++...+.+.+ ...+|+|-.
T Consensus 89 ~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~ 141 (396)
T PRK12735 89 VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (396)
T ss_pred HHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence 1 1246788887666665554444444456666777765 578999964
No 159
>PRK09866 hypothetical protein; Provisional
Probab=98.51 E-value=1.5e-06 Score=94.52 Aligned_cols=72 Identities=15% Similarity=0.128 Sum_probs=51.2
Q ss_pred CcEEEEecCCcccCCCC----------CccceEEEeccccCCcccHHHHHHHHHHhcCc--ceehhhcCCCCCC----CH
Q 012726 351 KRIFLIDCPGVVYQNKD----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK--EHLKRAYKIKDWV----DE 414 (457)
Q Consensus 351 ~~i~liDtPGi~~~~~~----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~--~~l~~~y~i~~~~----~~ 414 (457)
.+++|+||||+..+... .++|++|..+.........+..+...|++.++ +.+.+.||+|... +.
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreeddk 309 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDDA 309 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccchH
Confidence 47899999999876422 46899999666555455556678888888875 8999999999532 23
Q ss_pred HHHHHHHH
Q 012726 415 NDFLLQLC 422 (457)
Q Consensus 415 ~efL~~la 422 (457)
+.+++.++
T Consensus 310 E~Lle~V~ 317 (741)
T PRK09866 310 DQVRALIS 317 (741)
T ss_pred HHHHHHHH
Confidence 44555543
No 160
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.51 E-value=1.8e-07 Score=103.58 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=71.1
Q ss_pred hcCccceEEEEeecCCCchHHHHHHHhCCCCcee----------cCCCCce----------------------eEEEEEE
Q 012726 301 KSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKV----------APIPGET----------------------KVWQYIT 348 (457)
Q Consensus 301 ~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~v----------s~~pg~T----------------------~~~~~~~ 348 (457)
...+..++|+++|.+|+|||||+|+|+......+ +..+|+| .+..+..
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 3446678999999999999999999986543222 2234444 3322222
Q ss_pred c---CCcEEEEecCCcccCC-----CCCccceEEEeccccCCcccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 349 L---TKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 349 ~---~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
+ +.++.|+||||..... ....+|+++..+...+.+.........++...+ ++.+...||+|-.
T Consensus 99 ~~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~ 170 (632)
T PRK05506 99 FATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV 170 (632)
T ss_pred EccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc
Confidence 1 3478999999974321 124678888866665555443333344556555 4567789999954
No 161
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.51 E-value=8.6e-07 Score=79.42 Aligned_cols=120 Identities=20% Similarity=0.077 Sum_probs=68.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|++..... ..+..|.+.....+.++ -.+.++||||.-... .-..++.++..+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 479999999999999999999876432 22222222112222222 367899999963211 113566666644
Q ss_pred cccC--CcccHHHHHHHHHHhcC-------cceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRVK-------KEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~~-------~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
+..+ .+.....++..+...+. .+.+.+.++.|..+ ...+-...++...|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 141 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKG 141 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcC
Confidence 3322 22333344444444432 46788889988531 12344455666665
No 162
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.49 E-value=1.1e-06 Score=78.68 Aligned_cols=119 Identities=13% Similarity=0.019 Sum_probs=67.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCcee--EEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK--VWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~--~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
++|+++|.||||||||+|+|.+.... ....+..+. ....+..+. .+.++||||..... .-..+|+++..
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFS-EQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999999987652 222222222 222333332 57899999964221 11456777664
Q ss_pred ccccCCcccH---HHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 377 VVRVTNLEDA---AEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l~~~---~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+. ..+.... ..++..+.... ..+.+...+++|... -..+....++++.|+
T Consensus 80 ~d-~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~ 137 (164)
T smart00175 80 YD-ITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGL 137 (164)
T ss_pred EE-CCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCC
Confidence 43 3332111 11222222222 357888889988432 123445556666654
No 163
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=98.48 E-value=7.9e-07 Score=95.20 Aligned_cols=118 Identities=20% Similarity=0.183 Sum_probs=76.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-----HHHHHHHHHh---------
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-----HHLERHLKEH--------- 240 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-----~~l~k~L~~~--------- 240 (457)
.+..+.|+||+..-... .+.+-.+.++.++++|+||+|+|+.+....++ ..+.+.|...
T Consensus 206 ~~f~laDtPGliegas~-------g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~ 278 (500)
T PRK12296 206 TRFTVADVPGLIPGASE-------GKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLG 278 (500)
T ss_pred eEEEEEECCCCccccch-------hhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccch
Confidence 34567899998532211 13444556778899999999999965322221 1222222211
Q ss_pred ---cCCCcEEEEeecCCCCChhhHHHHHH-HHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 241 ---CKHKHMILLLNKCDLVPAWATKGWLR-VLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 241 ---~~~K~vIlVLNKiDLvp~~~~~~wl~-~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
..++|.|+|+||+|+.+......++. .+.. ....+|.+||.++.|+.+|+..|.+.+..
T Consensus 279 ~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~-~g~~Vf~ISA~tgeGLdEL~~~L~ell~~ 341 (500)
T PRK12296 279 LGDLAERPRLVVLNKIDVPDARELAEFVRPELEA-RGWPVFEVSAASREGLRELSFALAELVEE 341 (500)
T ss_pred hhhhcCCCEEEEEECccchhhHHHHHHHHHHHHH-cCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 13689999999999975543333333 3332 24567889999999999999999887754
No 164
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.47 E-value=8.8e-07 Score=97.02 Aligned_cols=115 Identities=18% Similarity=0.132 Sum_probs=76.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-CC-cEEEEecCCcccCC-----CCCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-TK-RIFLIDCPGVVYQN-----KDSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-~~-~i~liDtPGi~~~~-----~~~e~dlvL~ 375 (457)
++..|+++|.+|+|||||+|+|++..+. ....+|+|.+.... .. +. .+.|+||||..... ....+|+++.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~-~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVA-QGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcc-cccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 4578999999999999999999987653 34457888765432 22 23 79999999975322 1245677777
Q ss_pred eccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC-CHHHHHHH
Q 012726 376 GVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-DENDFLLQ 420 (457)
Q Consensus 376 gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~-~~~efL~~ 420 (457)
.+...+............+...+.+.+...|++|... +.+++...
T Consensus 165 VVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~ 210 (587)
T TIGR00487 165 VVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQE 210 (587)
T ss_pred EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHH
Confidence 5554444433333334455666778999999999543 44444333
No 165
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.47 E-value=4.8e-07 Score=82.98 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=65.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCC-----CCCccceEEEecc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQN-----KDSETDIVLKGVV 378 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv 378 (457)
+.++|+++|.+|||||||++.|.........+..|.+. ..+.. ...+.|+||||..... .-..++.++..++
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D 85 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 85 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCccccCCcccce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEe
Confidence 46899999999999999999998654433333333322 22222 3468999999985321 1246788877555
Q ss_pred ccC--CcccHHHHHHHHHHhc---CcceehhhcCCCC
Q 012726 379 RVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKD 410 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~ 410 (457)
..+ .+.+....+.+++... +.+.+...++.|-
T Consensus 86 ~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 122 (168)
T cd04149 86 SADRDRIDEARQELHRIINDREMRDALLLVFANKQDL 122 (168)
T ss_pred CCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCC
Confidence 443 2333444455555432 3578889999984
No 166
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=98.46 E-value=5.8e-07 Score=92.70 Aligned_cols=111 Identities=23% Similarity=0.308 Sum_probs=71.7
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKC 253 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKi 253 (457)
...+.||+|+.......+ ...++...+.+.++|+||+|+|+.+|..... ..+.+.+... ..++|+|+|+||+
T Consensus 238 ~i~l~DT~G~~~~l~~~l------ie~f~~tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~ 311 (351)
T TIGR03156 238 EVLLTDTVGFIRDLPHEL------VAAFRATLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKI 311 (351)
T ss_pred eEEEEecCcccccCCHHH------HHHHHHHHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEee
Confidence 445789999832111111 1224555667889999999999998864322 1223444432 2378999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 254 DLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
|+.+...... +...++ .++.+||+++.|+++|++.|.+.
T Consensus 312 Dl~~~~~v~~----~~~~~~-~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 312 DLLDEPRIER----LEEGYP-EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCChHhHHH----HHhCCC-CEEEEEccCCCCHHHHHHHHHhh
Confidence 9987543221 212222 35778999999999999988653
No 167
>PLN03118 Rab family protein; Provisional
Probab=98.46 E-value=1.2e-06 Score=83.34 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=79.8
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
..++|+++|.+|||||||+|+|++......++..|++.....+.++. .+.|+||||....... ..++.++..
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv 92 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILV 92 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 36899999999999999999999877655555555544333344432 5789999996432211 356666664
Q ss_pred ccccC--CcccHHHHHHHHHHhc----CcceehhhcCCCCCC---CHHHHHHHHHHHcCCcc-----cCCcccHHHHHHH
Q 012726 377 VVRVT--NLEDAAEHIGEVLKRV----KKEHLKRAYKIKDWV---DENDFLLQLCKSTGKLL-----RVCLFLHFISWYL 442 (457)
Q Consensus 377 vv~~~--~l~~~~~~i~~~L~~~----~~~~l~~~y~i~~~~---~~~efL~~la~r~g~l~-----kgg~pD~~~aa~~ 442 (457)
++..+ .+.+...+....+... ..+.+.+.+++|-.. ...+....++...+... +-| -+++..-..
T Consensus 93 ~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~-~~v~~l~~~ 171 (211)
T PLN03118 93 YDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTR-ENVEQCFEE 171 (211)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCC-CCHHHHHHH
Confidence 33321 1222222222233322 235677788888421 12234445666655321 112 245555555
Q ss_pred HHHHHH
Q 012726 443 FFYDHI 448 (457)
Q Consensus 443 ~l~d~~ 448 (457)
++..+.
T Consensus 172 l~~~~~ 177 (211)
T PLN03118 172 LALKIM 177 (211)
T ss_pred HHHHHH
Confidence 554443
No 168
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=98.46 E-value=6.6e-07 Score=79.12 Aligned_cols=106 Identities=23% Similarity=0.206 Sum_probs=73.6
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+...... .....+...+..+..+|++++|+|+.++.+..+..+... ..++|+++|+||+|+.
T Consensus 51 ~~i~DtpG~~~~~~~------~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~----~~~~~vi~v~nK~D~~ 120 (157)
T cd04164 51 VRLIDTAGIRETEDE------IEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL----PADKPIIVVLNKSDLL 120 (157)
T ss_pred EEEEECCCcCCCcch------HHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh----hcCCCEEEEEEchhcC
Confidence 346889987533211 113334556677889999999999998776655444333 2479999999999998
Q ss_pred ChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 257 p~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+.... .........+.+||.++.|+.+|++.|.+.+
T Consensus 121 ~~~~~------~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 121 PDSEL------LSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred Ccccc------ccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 76533 1222224566789999999999999987653
No 169
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=98.45 E-value=7.5e-07 Score=79.63 Aligned_cols=118 Identities=15% Similarity=0.056 Sum_probs=66.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC---CcEEEEecCCcccCCCC-----CccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
++|+++|.||||||||+|+|+..... ....+++.+. .....+ ..+.++||||....... ..++.++..
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCc--cccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 37999999999999999999975542 2233333211 112222 25789999996433211 233444432
Q ss_pred ccc--cCCcccHHHHHHHHHHh---cCcceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 377 VVR--VTNLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 377 vv~--~~~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
++- ...+.+...+...++.. .+.+.+.+.+++|... ...+....++...|
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~ 136 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWG 136 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhC
Confidence 221 12233344555555554 4578899999999543 22233444555544
No 170
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=98.45 E-value=1.1e-06 Score=79.28 Aligned_cols=120 Identities=12% Similarity=0.058 Sum_probs=66.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.||||||||+|+|.+..... ..+..|++.....+..+. .+.++||||....... ..++.++..+
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 83 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVY 83 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEE
Confidence 689999999999999999999876432 223333222222233332 5789999997542211 3455455433
Q ss_pred ccc--CCcccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 378 VRV--TNLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~--~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
+.. ..+.+....+..+.... +.+.+.+.++.|-.. ...+-...+++..+
T Consensus 84 d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (165)
T cd01868 84 DITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNG 139 (165)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcC
Confidence 322 11222222333333333 356788889988432 12334455665544
No 171
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.44 E-value=5.3e-07 Score=81.09 Aligned_cols=102 Identities=22% Similarity=0.188 Sum_probs=61.7
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE-cCCcEEEEecCCcccCC-----CCCccceEEEeccccC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT-LTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVT 381 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~-~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~ 381 (457)
+|+++|.+|||||||+++|.........+.-|.+. ..+. .+..+.++||||..... .-..+++++..++..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 78 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNV--ETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTD 78 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCe--EEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 48999999999999999997655433222222221 1121 23468999999975321 1246787777554332
Q ss_pred C--cccHHHHHHHHHHhc---CcceehhhcCCCCC
Q 012726 382 N--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDW 411 (457)
Q Consensus 382 ~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~ 411 (457)
. +......+..+++.. ..+.+...+++|-.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~ 113 (158)
T cd04151 79 RDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMP 113 (158)
T ss_pred HHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCC
Confidence 1 122233444444432 56889999999854
No 172
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=98.44 E-value=3.7e-07 Score=82.73 Aligned_cols=114 Identities=20% Similarity=0.178 Sum_probs=71.9
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC----CCCCHH---HHHHHHHhc-------
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ----GTRCHH---LERHLKEHC------- 241 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~----~s~~~~---l~k~L~~~~------- 241 (457)
...+.|+||+...... .+.++.+.+..+..+|+|++|+|+.++. ...... +...+....
T Consensus 45 ~~~i~DtpG~~~~~~~-------~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (176)
T cd01881 45 RIQVADIPGLIEGASE-------GRGLGNQFLAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGL 117 (176)
T ss_pred eEEEEeccccchhhhc-------CCCccHHHHHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3457899997422111 1334456667788899999999998773 111111 222222111
Q ss_pred -CCCcEEEEeecCCCCChhhHHHHHH-HHHhcCCeeEEEeeccCCCChHHHHHHHHH
Q 012726 242 -KHKHMILLLNKCDLVPAWATKGWLR-VLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 242 -~~K~vIlVLNKiDLvp~~~~~~wl~-~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
.++|+++|+||+|+........|.. .........++.+|+.++.|+++|.+.|..
T Consensus 118 ~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~ 174 (176)
T cd01881 118 LTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYE 174 (176)
T ss_pred HhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHh
Confidence 3689999999999987765555521 112223345778899999999999887753
No 173
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=98.44 E-value=1.3e-06 Score=78.33 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=68.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|++..... ..+.+|.+.....+.++ -.+.|+||||-.... .-..++.++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 81 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence 689999999999999999999877544 45555543333333332 257899999953211 113456666643
Q ss_pred ccc--CCcccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 378 VRV--TNLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~--~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
... +.+......+..+.... ..+.+...+++|.... ..+.+..+++..|
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 137 (163)
T cd01860 82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENG 137 (163)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcC
Confidence 332 12222223333333333 2346778888884321 2233445565555
No 174
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.43 E-value=6.3e-07 Score=80.85 Aligned_cols=103 Identities=19% Similarity=0.135 Sum_probs=59.5
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCce---ecCCCCceeE--EEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCK---VAPIPGETKV--WQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~---vs~~pg~T~~--~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
+|+++|.+|||||||+|.|.+..... ....+..|.. ...+.. +..+.++||||...... -..++.++..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 47999999999999999998743211 1111122322 222222 35789999999753221 1456777764
Q ss_pred ccccCC--cccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 377 VVRVTN--LEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 377 vv~~~~--l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
++..+. +......+..++.. .+.+.+...|++|-
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~ 119 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDL 119 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccc
Confidence 443321 22222333334432 24678889999984
No 175
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.42 E-value=1e-06 Score=85.23 Aligned_cols=118 Identities=19% Similarity=0.242 Sum_probs=77.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCC-CCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC--CCCccceEEEecccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTK-NVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN--KDSETDIVLKGVVRV 380 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~-~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~--~~~e~dlvL~gvv~~ 380 (457)
..+..|+++|.||+|||||+|+|.+. ....++...|+... ....+.++.++||||..... ....+|+++..++..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i~i--~~~~~~~i~~vDtPg~~~~~l~~ak~aDvVllviDa~ 114 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPITV--VTGKKRRLTFIECPNDINAMIDIAKVADLVLLLIDAS 114 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccEEE--EecCCceEEEEeCCchHHHHHHHHHhcCEEEEEEecC
Confidence 45678999999999999999999875 23344555664211 11235689999999965211 114678888877766
Q ss_pred CCcccHHHHHHHHHHhcCcce-ehhhcCCCCCCCH---HHHHHHHHH
Q 012726 381 TNLEDAAEHIGEVLKRVKKEH-LKRAYKIKDWVDE---NDFLLQLCK 423 (457)
Q Consensus 381 ~~l~~~~~~i~~~L~~~~~~~-l~~~y~i~~~~~~---~efL~~la~ 423 (457)
+.+......+...+...+.+. +...+++|...+. ++....+..
T Consensus 115 ~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~ 161 (225)
T cd01882 115 FGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH 161 (225)
T ss_pred cCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH
Confidence 666555566677776666564 5589999965433 344444444
No 176
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=98.42 E-value=1.8e-06 Score=76.90 Aligned_cols=118 Identities=14% Similarity=0.043 Sum_probs=63.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|||||||+|++.+..... ..+.++.+. ..+.++. .+.++||||--.... -..++.++..
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVD--EYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcC--CcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 579999999999999999999765421 122222211 1122332 367899999643211 1234544432
Q ss_pred c--cccCCcccHHHHHHHHHHhc---CcceehhhcCCCCCCC--HHHHHHHHHHHcC
Q 012726 377 V--VRVTNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWVD--ENDFLLQLCKSTG 426 (457)
Q Consensus 377 v--v~~~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~~--~~efL~~la~r~g 426 (457)
+ ...+.+.+...++..+++.. +.+.+...+++|.... ..+-+..++...|
T Consensus 80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~ 136 (162)
T cd04138 80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYG 136 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhC
Confidence 2 22222333333444444432 4577889999985332 1233444555555
No 177
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=98.41 E-value=1.3e-06 Score=78.86 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=57.2
Q ss_pred ccCEEEEEeeCCCCCCCCCH---HHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChH
Q 012726 212 SSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKG 288 (457)
Q Consensus 212 ~sDvIL~VvDardp~~s~~~---~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~ 288 (457)
.+|++|+|+|+.++.+.... .+.+.+.....+.|+|+|+||+|+........ .+.+.......+|.+||+++.|++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~gi~ 157 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSE-IEEEEELEGEEVLKISTLTEEGVD 157 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHH-HHHhhhhccCceEEEEecccCCHH
Confidence 36899999999876542112 23333433223789999999999986544332 222323233457788999999999
Q ss_pred HHHHHHHHH
Q 012726 289 SLLSVLRQF 297 (457)
Q Consensus 289 ~Li~~L~~~ 297 (457)
+|++.|...
T Consensus 158 ~l~~~l~~~ 166 (168)
T cd01897 158 EVKNKACEL 166 (168)
T ss_pred HHHHHHHHH
Confidence 999988754
No 178
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.41 E-value=8.1e-07 Score=92.98 Aligned_cols=108 Identities=26% Similarity=0.269 Sum_probs=77.9
Q ss_pred CcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh
Q 012726 179 GVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (457)
Q Consensus 179 ~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~ 258 (457)
..||.|++.. .+.+- +.=.+..++.++.||+||+|+|+..|+...+..+...+. .++|+++|+||+||.++
T Consensus 269 l~DTAGiRet-~d~VE-----~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~~~---~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 269 LVDTAGIRET-DDVVE-----RIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIELLP---KKKPIIVVLNKADLVSK 339 (454)
T ss_pred EEecCCcccC-ccHHH-----HHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHHhcc---cCCCEEEEEechhcccc
Confidence 5677777622 12121 222677889999999999999999998777777666332 47999999999999987
Q ss_pred hhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 259 WATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 259 ~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
...... .+ ......+.+|++++.|++.|.+.|.++..
T Consensus 340 ~~~~~~--~~--~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 340 IELESE--KL--ANGDAIISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred cccchh--hc--cCCCceEEEEecCccCHHHHHHHHHHHHh
Confidence 543222 11 11234567899999999999999998774
No 179
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.41 E-value=2.8e-06 Score=76.91 Aligned_cols=120 Identities=10% Similarity=0.021 Sum_probs=64.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++|+++|.+|||||||++.+........ .+..+.+.....+.++. .+.++||||--.... -..+|+++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 4799999999999999999987543221 11222221111222222 477999999643221 14567777744
Q ss_pred cccCCc--ccHHHHHHHHHHhc-CcceehhhcCCCCCCCHHHHHHHHHHHcC
Q 012726 378 VRVTNL--EDAAEHIGEVLKRV-KKEHLKRAYKIKDWVDENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~~l--~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~~~~efL~~la~r~g 426 (457)
+..+.. .+....+..+.... ..+.+...+++|-.....+-...++.+.+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~ 132 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHN 132 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcC
Confidence 433221 11222233332222 46789999999843222222334455444
No 180
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.41 E-value=8.4e-07 Score=79.38 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=63.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCC--CceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEecccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKN--VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRV 380 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~--~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~ 380 (457)
+|+++|.+|||||||+++|.+.. .....+..|.+... +..-+..+.++||||...... -..++.++..++..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~ 79 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES-FEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSS 79 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE-EEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCC
Confidence 47999999999999999999863 33455566654322 112234689999999753221 14677777754443
Q ss_pred CCc--ccHHHHHHHHHHh-----cCcceehhhcCCCCC
Q 012726 381 TNL--EDAAEHIGEVLKR-----VKKEHLKRAYKIKDW 411 (457)
Q Consensus 381 ~~l--~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~ 411 (457)
+.. ......+..++.. .+.+.+.+.+|.|-.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~ 117 (162)
T cd04157 80 DRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLP 117 (162)
T ss_pred cHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCcccc
Confidence 221 1112233333332 246789999999854
No 181
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.41 E-value=1.6e-06 Score=92.28 Aligned_cols=110 Identities=15% Similarity=0.138 Sum_probs=72.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCC-CCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDP-QGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp-~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
+..++|+||. ..+.+.+...+..+|++++|+||..+ ......+....+.. ..-+++|+|+||+|
T Consensus 118 ~i~~IDtPGH--------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lgi~~iIVvlNKiD 182 (460)
T PTZ00327 118 HVSFVDCPGH--------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MKLKHIIILQNKID 182 (460)
T ss_pred eEeeeeCCCH--------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cCCCcEEEEEeccc
Confidence 3457888885 34566677788899999999999874 22221111122221 22457899999999
Q ss_pred CCChhhHHHHHHH----HHhc--CCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 255 LVPAWATKGWLRV----LSKE--YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 255 Lvp~~~~~~wl~~----l~~~--~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+++........+. +... ....+|++||.+|.|++.|++.|.+.++.
T Consensus 183 lv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 183 LVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred ccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 9975433322222 2221 12567899999999999999999976654
No 182
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=98.41 E-value=1.2e-06 Score=79.97 Aligned_cols=110 Identities=23% Similarity=0.213 Sum_probs=68.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCC-----CCCccceEEEeccccC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVT 381 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~ 381 (457)
+|+++|.+|||||||+|.|.+.......+..|.+.. .+.. +..+.++||||-.... .-..++.++..++..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~--~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT--KLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEE--EEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCc
Confidence 479999999999999999998754445566665533 2222 3468899999953221 1146677777554332
Q ss_pred --CcccHHHHHHHHHHh---cCcceehhhcCCCCC--CCHHHHHH
Q 012726 382 --NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDW--VDENDFLL 419 (457)
Q Consensus 382 --~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~--~~~~efL~ 419 (457)
.+.+....+..++.. .+.+.+...||+|-. .+..++.+
T Consensus 79 ~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~ 123 (167)
T cd04161 79 DDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIE 123 (167)
T ss_pred hhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHH
Confidence 233333344444433 246788899999843 33444443
No 183
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=98.40 E-value=1.9e-06 Score=81.02 Aligned_cols=112 Identities=25% Similarity=0.291 Sum_probs=73.1
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKC 253 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKi 253 (457)
...+.|++|+...... .....+......+..+|++++|+|++++..... ..+.+.+... ..++|+++|+||+
T Consensus 90 ~~~i~Dt~G~~~~~~~------~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~ 163 (204)
T cd01878 90 EVLLTDTVGFIRDLPH------QLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKI 163 (204)
T ss_pred eEEEeCCCccccCCCH------HHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEcc
Confidence 4456899997421111 112334445556778999999999998765433 2233444432 2368999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 254 DLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
|+.+..... ..+. .....++.+||.++.|+.++++.|.+.
T Consensus 164 Dl~~~~~~~---~~~~-~~~~~~~~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 164 DLLDDEELE---ERLE-AGRPDAVFISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred ccCChHHHH---HHhh-cCCCceEEEEcCCCCCHHHHHHHHHhh
Confidence 998765433 2222 233446788999999999999888653
No 184
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=98.40 E-value=1.7e-06 Score=77.77 Aligned_cols=117 Identities=12% Similarity=0.017 Sum_probs=64.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
+|+++|.+|||||||+|++.+...... .+.++.+ ...+..+ -.+.++||||....... ..++.++..+
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDD--YDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc--cCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 789999999999999999997654221 1222221 1122222 25678999996543211 2345544423
Q ss_pred cc--cCCcccHHHHHHHHHHh---cCcceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 378 VR--VTNLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~--~~~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
+. .+.+.....+...+.+. ...+.+...+++|... ...+....+++..+
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 136 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWG 136 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcC
Confidence 22 22233333333333332 2457788889998432 12344555666655
No 185
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.40 E-value=2e-06 Score=77.73 Aligned_cols=120 Identities=18% Similarity=0.163 Sum_probs=67.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|.+..... ..+..|.+.....+..+. .+.++||||...... -..++.++..+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 479999999999999999999865421 112223221112222222 467999999642211 13466666544
Q ss_pred ccc--CCcccHHHHHHHHHHhc------CcceehhhcCCCCCC-C--HHHHHHHHHHHcC
Q 012726 378 VRV--TNLEDAAEHIGEVLKRV------KKEHLKRAYKIKDWV-D--ENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~--~~l~~~~~~i~~~L~~~------~~~~l~~~y~i~~~~-~--~~efL~~la~r~g 426 (457)
+.. +.+.....+...++..+ +.+.+...+++|-.. . ..+.+..+++..|
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNG 140 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcC
Confidence 332 22222323333444444 456788889988541 1 2455666777766
No 186
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=98.39 E-value=1e-06 Score=80.86 Aligned_cols=119 Identities=14% Similarity=0.067 Sum_probs=64.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCc----eeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGE----TKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~----T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
.+|+++|.||||||||++++++... .....|.+ +.........-.+.|+||||...... ...++.++..+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHF-VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-ccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5799999999999999999997654 22222221 11111111122568999999643211 12334433322
Q ss_pred --cccCCcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 378 --VRVTNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 378 --v~~~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
...+.++....+...+++.. +.+.+...+++|-.. -..+.+..+++..+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 137 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWG 137 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcC
Confidence 22222333334445555543 347888999988421 12233456666655
No 187
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.39 E-value=8.5e-07 Score=88.24 Aligned_cols=125 Identities=18% Similarity=0.063 Sum_probs=86.6
Q ss_pred ccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEee
Q 012726 172 DASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLN 251 (457)
Q Consensus 172 ~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLN 251 (457)
.++.|.+|+|+||+-.-... ....-+....+..+.+++++|+|+.|+|+.++-....+.+..-+.+ ..+.|-|||+|
T Consensus 117 s~eTQlvf~DTPGlvs~~~~--r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~-ys~ips~lvmn 193 (379)
T KOG1423|consen 117 SGETQLVFYDTPGLVSKKMH--RRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEE-YSKIPSILVMN 193 (379)
T ss_pred cCceEEEEecCCcccccchh--hhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHH-HhcCCceeecc
Confidence 46788999999997532111 0011123355788999999999999999987666667777766665 35789999999
Q ss_pred cCCCCChh-hH----------------HHHHHHHHhcC-------------CeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 252 KCDLVPAW-AT----------------KGWLRVLSKEY-------------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 252 KiDLvp~~-~~----------------~~wl~~l~~~~-------------p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
|+|.++.. .+ .+|.+.+...- ...+|.+||++|.|+.+|.++|...++
T Consensus 194 kid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 194 KIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred chhcchhhhHHhhhHHhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 99987543 11 12333332110 134789999999999999998876654
No 188
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.39 E-value=2.8e-06 Score=76.76 Aligned_cols=121 Identities=16% Similarity=0.118 Sum_probs=68.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
.++|+++|.+|||||||++++........ .+..|+......+.++. .+.|+||||-.... .-..+|.++..
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv 82 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA 82 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 47899999999999999999987554322 22222222222333332 57899999963211 11346776664
Q ss_pred ccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 377 VVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
+ +..+. ......+..+.... +.+.+.+.+++|-.+. ..+-...+++..+.
T Consensus 83 ~-d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (165)
T cd01864 83 Y-DITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGM 140 (165)
T ss_pred E-ECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 3 33322 22222333333221 3457888999985432 12345567777665
No 189
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.39 E-value=1.7e-06 Score=97.28 Aligned_cols=118 Identities=19% Similarity=0.177 Sum_probs=78.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCC-----CCccceEEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
.++..|+++|++|+|||||+++|++..+. .+..+|.|.+...+.+ +..+.|+||||...... ...+|+++.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~-~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVA-AGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcc-ccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 35678999999999999999999986653 4456777765543222 45789999999753321 135678777
Q ss_pred eccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHH
Q 012726 376 GVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLC 422 (457)
Q Consensus 376 gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la 422 (457)
.+...+.+..........+...+.+.+...|++|.. .+.+.+...+.
T Consensus 367 VVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~ 414 (787)
T PRK05306 367 VVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELS 414 (787)
T ss_pred EEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHH
Confidence 665544443333333445666777899999999953 34455555443
No 190
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.38 E-value=1.6e-06 Score=78.75 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecC--CCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEeccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAP--IPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGVVR 379 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~--~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~ 379 (457)
++|+++|.+|||||||+|+|.+.......+ .+.+|.........-.+.++||||...... -..+++++..+ +
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~-d 79 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY-S 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE-E
Confidence 479999999999999999998765422211 122222222111123678999999753211 14567766643 3
Q ss_pred cCCc---ccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 380 VTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 380 ~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
..+. .....+....++.. ..+.+.+.+++|-
T Consensus 80 ~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl 115 (166)
T cd01893 80 VDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDL 115 (166)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhc
Confidence 3332 22112222334332 4578888899884
No 191
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.38 E-value=1.8e-06 Score=90.37 Aligned_cols=109 Identities=15% Similarity=0.128 Sum_probs=72.3
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCC------CCceec---------CCCCceeEEEEEEc---CCcEEEEecCCcccC
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTK------NVCKVA---------PIPGETKVWQYITL---TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~------~~~~vs---------~~pg~T~~~~~~~~---~~~i~liDtPGi~~~ 364 (457)
.++.++|+++|++++|||||+++|++. ...... -..|+|.+...+.+ +.++.|+||||....
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f 88 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence 356799999999999999999999842 111111 13688887655554 346899999997432
Q ss_pred C-----CCCccceEEEeccccCCcccHHHHHHHHHHhcCccee-hhhcCCCCC
Q 012726 365 N-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHL-KRAYKIKDW 411 (457)
Q Consensus 365 ~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l-~~~y~i~~~ 411 (457)
. ....+|.++..+...+.+.........++...+.+.+ ...+|+|-.
T Consensus 89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~ 141 (394)
T TIGR00485 89 VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV 141 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence 1 1135688777666555554444444555666676665 679999853
No 192
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=98.37 E-value=2.5e-06 Score=79.34 Aligned_cols=105 Identities=19% Similarity=0.196 Sum_probs=63.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++.++|+++|.+|||||||++.+.........+..|... ..+.. +-.+.|+||||...... -..++.++..+
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~--~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~ 92 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNV--ETVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVV 92 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccce--EEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 456899999999999999999996544433333333221 12222 33689999999743211 14667777754
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
+..+ .+.+....+..++.. -..+.+...|+.|-
T Consensus 93 D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 130 (182)
T PTZ00133 93 DSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDL 130 (182)
T ss_pred eCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCC
Confidence 4322 233333344444432 13577888899884
No 193
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.37 E-value=1.4e-06 Score=80.83 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=62.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc----CCcEEEEecCCcccCC-----CCCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL----TKRIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~----~~~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
.++|+++|.+|||||||++++.........+..|.+.....+.. +-.+.++||||..... .-..++.++..
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 82 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFV 82 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEE
Confidence 57899999999999999999987654322222232222222221 2368999999974221 11357777775
Q ss_pred ccccCC--cccHHHHHHHHHH---hcCcceehhhcCCCCC
Q 012726 377 VVRVTN--LEDAAEHIGEVLK---RVKKEHLKRAYKIKDW 411 (457)
Q Consensus 377 vv~~~~--l~~~~~~i~~~L~---~~~~~~l~~~y~i~~~ 411 (457)
++..+. +.+....+..++. ..+.+.+.+.+++|..
T Consensus 83 ~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~ 122 (183)
T cd04152 83 VDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLP 122 (183)
T ss_pred EECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcc
Confidence 543321 2222222333332 2356889999999854
No 194
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=98.37 E-value=8e-07 Score=78.36 Aligned_cols=107 Identities=17% Similarity=0.197 Sum_probs=61.6
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC---------CCCccceEEEecc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN---------KDSETDIVLKGVV 378 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~---------~~~e~dlvL~gvv 378 (457)
+|+++|.+|||||||+|+|.+.... .+. |....+ .. .++||||..... .-..+|+++..++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~~~~~---~~--~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQAVEY---ND--GAIDTPGEYVENRRLYSALIVTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ceeEEE---cC--eeecCchhhhhhHHHHHHHHHHhhcCCEEEEEec
Confidence 6899999999999999999987542 111 222222 11 689999973110 1146777777554
Q ss_pred ccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCC--HHHHHHHHHHHcCC
Q 012726 379 RVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVD--ENDFLLQLCKSTGK 427 (457)
Q Consensus 379 ~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~--~~efL~~la~r~g~ 427 (457)
..+....... .++.....+.+...+++|-.+. ..+..+.+++..|.
T Consensus 72 ~~~~~s~~~~---~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 119 (142)
T TIGR02528 72 ATDPESRFPP---GFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGA 119 (142)
T ss_pred CCCCCcCCCh---hHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcCC
Confidence 3322211111 2233334578888899985321 23344555555553
No 195
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=98.37 E-value=2.6e-06 Score=77.36 Aligned_cols=122 Identities=12% Similarity=0.064 Sum_probs=67.9
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
.++|+++|.+|||||||+|++.+..... ..+..|.+.....+..+. .+.|+||||...... -..+|.++..
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v 82 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV 82 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence 4789999999999999999999765322 223333332222333332 578999999643221 1356766664
Q ss_pred cccc--CCcccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 377 VVRV--TNLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~--~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
.+.. +.+......+..+.... +.+.+...++.|-.+. ..+-...+|.+.+.
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (167)
T cd01867 83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGI 140 (167)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCC
Confidence 3322 11222222222232222 3467888888885321 22335566666554
No 196
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.36 E-value=2.3e-06 Score=77.62 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=66.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|.+...... .+..|++.....+..+ -.+.++||||...... -..++.++..+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 5799999999999999999998765321 2222222222222222 2578999999653221 13556666533
Q ss_pred cccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 378 VRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
++.+. .....++..+.... ..+.+...+++|-.+. ..+-...++.+.|+
T Consensus 82 -d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 138 (165)
T cd01865 82 -DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGF 138 (165)
T ss_pred -ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC
Confidence 33222 22222222332222 3467888899884322 23444556666654
No 197
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.35 E-value=2.2e-06 Score=79.55 Aligned_cols=120 Identities=19% Similarity=0.157 Sum_probs=76.9
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
+..+.|+||+...... .........+.....+..+.++++++|+|+..+.......+.+++.. .+.|+++|+||+|+
T Consensus 71 ~l~l~DtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~--~~~~~iiv~nK~Dl 147 (196)
T PRK00454 71 KLRLVDLPGYGYAKVS-KEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE--YGIPVLIVLTKADK 147 (196)
T ss_pred eEEEeCCCCCCCcCCC-chHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH--cCCcEEEEEECccc
Confidence 4457899996421100 00000012233334445566789999999988876655556666654 36899999999999
Q ss_pred CChhhHHHHH----HHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 256 VPAWATKGWL----RVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 256 vp~~~~~~wl----~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.+........ +.+... ...++++||+.+.|++++++.|.+++.
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~-~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 148 LKKGERKKQLKKVRKALKFG-DDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CCHHHHHHHHHHHHHHHHhc-CCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 8754333322 223222 345678899999999999999988764
No 198
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=98.35 E-value=2.6e-06 Score=79.24 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=58.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|||||||||++++..... ..+..|.+.....+.++. .+.++||||.-.... -..+++++..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 479999999999999999999765421 222333222222334433 356999999643211 1356777664
Q ss_pred ccccCCccc---HHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 377 VVRVTNLED---AAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 377 vv~~~~l~~---~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
+ +...... ...++.. +... +.+.+.+.++.|-
T Consensus 81 ~-d~~~~~s~~~~~~~~~~-i~~~~~~~piilv~nK~Dl 117 (193)
T cd04118 81 Y-DLTDSSSFERAKFWVKE-LQNLEEHCKIYLCGTKSDL 117 (193)
T ss_pred E-ECCCHHHHHHHHHHHHH-HHhcCCCCCEEEEEEcccc
Confidence 3 3322211 1122222 2222 3578888899884
No 199
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=98.35 E-value=2.3e-06 Score=77.21 Aligned_cols=102 Identities=18% Similarity=0.136 Sum_probs=57.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCcee-EEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK-VWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~-~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|++.... ....|.... .......+ -.+.++||||....... ..++.++..+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP-TEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 57999999999999999999987641 112222111 11111221 25789999997642211 3467666644
Q ss_pred cccCCccc---HHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 378 VRVTNLED---AAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~~l~~---~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
+..+... ...+....+... ..+.+.+.++.|-
T Consensus 80 -d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl 116 (171)
T cd00157 80 -SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDL 116 (171)
T ss_pred -ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHh
Confidence 3333222 222222222222 3678888898873
No 200
>PRK12736 elongation factor Tu; Reviewed
Probab=98.34 E-value=1.7e-06 Score=90.60 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=74.2
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCC------ceec---------CCCCceeEEEEEEc---CCcEEEEecCCcccC
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNV------CKVA---------PIPGETKVWQYITL---TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~------~~vs---------~~pg~T~~~~~~~~---~~~i~liDtPGi~~~ 364 (457)
.++.++|+++|++++|||||+++|++... .... -..|+|.+.....+ +.++.|+||||....
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f 88 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY 88 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence 45689999999999999999999986311 0111 14688877654444 347899999995322
Q ss_pred C-----CCCccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCC
Q 012726 365 N-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDW 411 (457)
Q Consensus 365 ~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~ 411 (457)
- ....+|.++..+...+.+.........++...+.+ .+...+++|-.
T Consensus 89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~ 141 (394)
T PRK12736 89 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV 141 (394)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence 1 11456888886666665555454555566777777 46789999953
No 201
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.34 E-value=2.6e-06 Score=74.23 Aligned_cols=113 Identities=19% Similarity=0.166 Sum_probs=75.7
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...++|++|+....... ......+...+..+|++++|+|+..+.......+..... ..+.|+++|+||+|+
T Consensus 46 ~~~~~Dt~g~~~~~~~~-------~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~ 116 (163)
T cd00880 46 PVVLIDTPGIDEAGGLG-------REREELARRVLERADLILFVVDADLRADEEEEKLLELLR--ERGKPVLLVLNKIDL 116 (163)
T ss_pred cEEEEECCCCCccccch-------hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH--hcCCeEEEEEEcccc
Confidence 34578888875322110 111345566788999999999998887655444233332 247999999999999
Q ss_pred CChhhHHHHHH---HHHhcC-CeeEEEeeccCCCChHHHHHHHHHH
Q 012726 256 VPAWATKGWLR---VLSKEY-PSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 256 vp~~~~~~wl~---~l~~~~-p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
++......+.. ...... ...++.+|+.++.|+.++.+.|.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 117 LPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred CChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 98766555532 122222 2557788999999999998888653
No 202
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.33 E-value=1.5e-06 Score=84.47 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=60.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--E-EcCCcEEEEecCCcccCCCC------------Cc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--I-TLTKRIFLIDCPGVVYQNKD------------SE 369 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~-~~~~~i~liDtPGi~~~~~~------------~e 369 (457)
..-+|++||+|.||||||+..+++.+. ..+.+..||..... + +-+..|+++|.|||+..... ..
T Consensus 61 GdaRValIGfPSVGKStlLs~iT~T~S-eaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 61 GDARVALIGFPSVGKSTLLSKITSTHS-EAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred CCeEEEEecCCCccHHHHHHHhhcchh-hhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence 356899999999999999999998665 44555566654322 2 22568999999999987544 24
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhc
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRV 397 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~ 397 (457)
+|++|...++. .-++....+..-|+.+
T Consensus 140 aDlilMvLDat-k~e~qr~~le~ELe~v 166 (364)
T KOG1486|consen 140 ADLILMVLDAT-KSEDQREILEKELEAV 166 (364)
T ss_pred ccEEEEEecCC-cchhHHHHHHHHHHHh
Confidence 78888855543 2223333444444443
No 203
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.33 E-value=2.1e-06 Score=78.42 Aligned_cols=101 Identities=18% Similarity=0.157 Sum_probs=61.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEeccccC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVT 381 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~ 381 (457)
+|+++|.+|||||||+|+|.+.... ...|.+......+.. +-.+.++||||...... -..+|.++..+...+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~--~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~ 78 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM--QPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC--CcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCc
Confidence 4789999999999999999986432 222221111222222 33689999999754321 145677776444332
Q ss_pred --CcccHHHHHHHHHHhc---CcceehhhcCCCC
Q 012726 382 --NLEDAAEHIGEVLKRV---KKEHLKRAYKIKD 410 (457)
Q Consensus 382 --~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~ 410 (457)
.+.+....+..++... ..+.+...||.|-
T Consensus 79 ~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl 112 (169)
T cd04158 79 RDRVSEAHSELAKLLTEKELRDALLLIFANKQDV 112 (169)
T ss_pred HHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCc
Confidence 2444445555555432 2577888899884
No 204
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.33 E-value=2.3e-06 Score=93.89 Aligned_cols=105 Identities=17% Similarity=0.111 Sum_probs=69.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEE--EcC-CcEEEEecCCcccC-----CCCCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYI--TLT-KRIFLIDCPGVVYQ-----NKDSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~--~~~-~~i~liDtPGi~~~-----~~~~e~dlvL~g 376 (457)
+.|+++|++|+|||||+|+|++..... ....+|+|.+..+. ..+ ..+.++||||.-.. .....+|.++..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 468999999999999999999854211 12346888766543 332 46889999995321 112467888886
Q ss_pred ccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCC
Q 012726 377 VVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDW 411 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~ 411 (457)
++..+.+.........++...+.+ .+...||+|-.
T Consensus 81 VDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv 116 (581)
T TIGR00475 81 VDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV 116 (581)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence 666554433222233456666766 88899999854
No 205
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.33 E-value=3e-06 Score=81.96 Aligned_cols=104 Identities=18% Similarity=0.117 Sum_probs=65.4
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCC---------------CceeE-----EEEEEc--------CCcEEEEecC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIP---------------GETKV-----WQYITL--------TKRIFLIDCP 359 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p---------------g~T~~-----~~~~~~--------~~~i~liDtP 359 (457)
+|+++|..++|||||+++|+........... |.|.. ..+-.. ...+.|+|||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 6899999999999999999853321111111 22211 111111 2357899999
Q ss_pred CcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 360 GVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 360 Gi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
|....... ..+|.++..+...+.+......+...+...+.+.+...||+|-.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence 98754322 45677777666666665544555555555567889999999953
No 206
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.33 E-value=3.2e-06 Score=76.39 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=66.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC---CcEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|||||||+|.+.+.... ....|..+.+. ..+..+ -.+.++||||...... -..++.++..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYT-ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 58999999999999999999976542 23334333222 222222 2578999999643221 1356777764
Q ss_pred ccccCCcccHHHHHHHHHH---hc---CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 377 VVRVTNLEDAAEHIGEVLK---RV---KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~---~~---~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
++. .+. +....+..++. +. +.+.+...++.|.... ..+-...++...|.
T Consensus 82 ~d~-~~~-~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 139 (166)
T cd01869 82 YDV-TDQ-ESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGI 139 (166)
T ss_pred EEC-cCH-HHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCC
Confidence 433 222 11222222222 22 3467888888884322 12334556665553
No 207
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=98.32 E-value=4.1e-06 Score=75.01 Aligned_cols=118 Identities=12% Similarity=0.031 Sum_probs=64.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.||||||||+|.+...... ...+.++.+ ...+.++. .+.|+||||...... -..++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFV--EKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC--cccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 57999999999999999999875432 122222221 12233332 467899999643221 1345555543
Q ss_pred ccc--cCCcccHHHHHHHHHHhc---CcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 377 VVR--VTNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 377 vv~--~~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
++- .+.+.+....+..+.... +.+.+...+++|-... ..+....++++.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWG 137 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcC
Confidence 322 222222223333333322 3567888899884221 2334556666655
No 208
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.32 E-value=2e-06 Score=92.13 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=69.6
Q ss_pred cCccceEEEEeecCCCchHHHHHHHhCCCCceec----------CC----------------------CCceeEEEEEEc
Q 012726 302 SDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVA----------PI----------------------PGETKVWQYITL 349 (457)
Q Consensus 302 ~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs----------~~----------------------pg~T~~~~~~~~ 349 (457)
..+..++|+++|.+++|||||+++|+........ .. -|.|.+..+..+
T Consensus 23 ~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 23 QHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred cccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3467899999999999999999999854221110 01 244444433322
Q ss_pred ---CCcEEEEecCCcccCCC-----CCccceEEEeccccCCcccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 350 ---TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 350 ---~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
+.++.|+||||...... ...+|+++..+...+.+.........++..++ ++.+...||+|..
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~ 173 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV 173 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence 34789999999532111 14678888877766665443333344455554 4577899999954
No 209
>PRK13768 GTPase; Provisional
Probab=98.32 E-value=1.9e-06 Score=84.89 Aligned_cols=116 Identities=18% Similarity=0.087 Sum_probs=75.2
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhc--cCEEEEEeeCCCCCCCCCHHHHHHHH---HhcCCCcEEEEe
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDS--SDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLL 250 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~--sDvIL~VvDardp~~s~~~~l~k~L~---~~~~~K~vIlVL 250 (457)
..++.|+||....... +..+..+.+.+.. +|+|++|+|++.+....+.....++. ....++|+|+|+
T Consensus 98 ~~~~~d~~g~~~~~~~--------~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~ 169 (253)
T PRK13768 98 DYVLVDTPGQMELFAF--------RESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVL 169 (253)
T ss_pred CEEEEeCCcHHHHHhh--------hHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4467899997643321 2334444444444 89999999998765444433333332 112479999999
Q ss_pred ecCCCCChhhHHHHHHHHH----------------------------hcCC-eeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 251 NKCDLVPAWATKGWLRVLS----------------------------KEYP-SLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 251 NKiDLvp~~~~~~wl~~l~----------------------------~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+|+++....+...+++. +..+ ..++++|+.++.|+++|++.|.++++
T Consensus 170 nK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 170 NKADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred EhHhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9999987644333222222 1122 35678899999999999999998874
No 210
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=98.32 E-value=1.8e-06 Score=77.19 Aligned_cols=88 Identities=18% Similarity=0.181 Sum_probs=57.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH---hcCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~---~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~ 278 (457)
..+..+|++|+|+|+.++.... ...+...+.. ...+.|+++|+||+|+.+......+.+.+.- ..+..+|.
T Consensus 64 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 64 HYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred HHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEE
Confidence 3467899999999998764211 0122222221 0146899999999999764333333333321 12345788
Q ss_pred eeccCCCChHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLR 295 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~ 295 (457)
+||+++.|++++++.|.
T Consensus 144 ~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 144 SNALTGEGLDEGVQWLQ 160 (162)
T ss_pred eeCCCCCchHHHHHHHh
Confidence 99999999999998874
No 211
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=98.32 E-value=4.2e-06 Score=75.49 Aligned_cols=119 Identities=11% Similarity=0.028 Sum_probs=67.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
++|+++|.+|||||||+++++.... +...+.++.+. ..+.++. .+.++||||......- ..++.++..
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCC--CcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 5799999999999999999986433 22233333221 2233322 4578999997533211 244555443
Q ss_pred ccc--cCCcccHHHHHHHHHHhc---CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 377 VVR--VTNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~--~~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
++- .+.+++....+..++... +.+.+...+|+|-... ..+-.+.++++.+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGC 138 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCC
Confidence 322 222333334444555432 3578888999884221 22335667777663
No 212
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=98.32 E-value=3.3e-06 Score=75.84 Aligned_cols=120 Identities=10% Similarity=-0.008 Sum_probs=65.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|++..... ..+..|.......+.++ -.+.|+||||..... .-..++.++..+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 478999999999999999999765422 22233322222223332 257899999964221 113456666533
Q ss_pred cccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
+..+ .+.....++..+.... ..+.+...+++|.... ..+-...+++..|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~ 136 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENG 136 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcC
Confidence 3322 1222223333222222 3467888889874321 2233455666655
No 213
>PLN03126 Elongation factor Tu; Provisional
Probab=98.31 E-value=4e-06 Score=89.80 Aligned_cols=110 Identities=16% Similarity=0.140 Sum_probs=74.5
Q ss_pred cCccceEEEEeecCCCchHHHHHHHhCCCCc---------------eecCCCCceeEEEEEEc---CCcEEEEecCCccc
Q 012726 302 SDKQAISVGFVGYPNVGKSSVINTLRTKNVC---------------KVAPIPGETKVWQYITL---TKRIFLIDCPGVVY 363 (457)
Q Consensus 302 ~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~---------------~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~ 363 (457)
..++.++|+++|.+++|||||+++|+..... .-....|.|.+.....+ +.++.|+||||...
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 3467899999999999999999999853211 11223577765543332 45789999999643
Q ss_pred CCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCC
Q 012726 364 QNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDW 411 (457)
Q Consensus 364 ~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~ 411 (457)
.-.. ..+|.++..+...+.+.........++...+.+ .+...|++|-.
T Consensus 157 f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~ 210 (478)
T PLN03126 157 YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV 210 (478)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 2111 456888886666666655555555667777776 56789999953
No 214
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.31 E-value=4e-06 Score=78.30 Aligned_cols=120 Identities=14% Similarity=0.118 Sum_probs=67.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|||||||++.+.+.........|.++.+. ..+.++. .+.|+||||-..... -..+++++..
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 47899999999999999999876542212222222222 2233332 578999999532211 1356776664
Q ss_pred ccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 377 VVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
+ +.... .+....+..+.... ..+.+.+.+++|-... ..+-...++...|.
T Consensus 81 ~-D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~ 138 (191)
T cd04112 81 Y-DITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGV 138 (191)
T ss_pred E-ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCC
Confidence 4 33332 22233333333333 3467888899884221 23446667777653
No 215
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=98.30 E-value=2e-06 Score=79.69 Aligned_cols=105 Identities=18% Similarity=0.258 Sum_probs=64.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
.+..+|+++|.+|||||||+|.|.+.......+..+.+. ..+.. +..+.++||||...... -..++.++..+
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~ 94 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTS--EELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLV 94 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcce--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 346889999999999999999999866544333333322 22222 34678999999643211 13456666644
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
+..+ .+......+..++.. .+.+.+...++.|-
T Consensus 95 D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl 132 (190)
T cd00879 95 DAADPERFQESKEELDSLLSDEELANVPFLILGNKIDL 132 (190)
T ss_pred ECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCC
Confidence 4322 122233444445432 34678888999984
No 216
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.30 E-value=1.7e-06 Score=96.72 Aligned_cols=117 Identities=15% Similarity=0.191 Sum_probs=76.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-----CCcEEEEecCCcccCC-----CCCccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-----TKRIFLIDCPGVVYQN-----KDSETD 371 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-----~~~i~liDtPGi~~~~-----~~~e~d 371 (457)
.+...|+++|++|+|||||+++|++... ..+..+|.|.+...+ .+ +..+.|+||||..... ....+|
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~-~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI-AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC-ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 3567899999999999999999997655 234456777543211 11 2578999999974321 114578
Q ss_pred eEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC-CHHHHHHHH
Q 012726 372 IVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-DENDFLLQL 421 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~-~~~efL~~l 421 (457)
+++..+...+.+..........+...+.+.+...+++|... +.+++.+.+
T Consensus 321 iaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL 371 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQL 371 (742)
T ss_pred EEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHH
Confidence 88876655444433333334455666778999999999543 344444444
No 217
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=98.30 E-value=5.6e-06 Score=74.48 Aligned_cols=107 Identities=19% Similarity=0.132 Sum_probs=67.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...++|++|.... ..++ ...+..+|++++|+|+.++...........+.. .++|+++|+||+|+
T Consensus 51 ~~~iiDtpG~~~~-----------~~~~---~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~--~~~p~ivv~NK~Dl 114 (168)
T cd01887 51 GITFIDTPGHEAF-----------TNMR---ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA--ANVPFIVALNKIDK 114 (168)
T ss_pred eEEEEeCCCcHHH-----------HHHH---HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEEceec
Confidence 3456888886421 1122 234578999999999987653322233344443 47899999999999
Q ss_pred CChh--hHHHHHHHHHhc------CCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 256 VPAW--ATKGWLRVLSKE------YPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 256 vp~~--~~~~wl~~l~~~------~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.... .....+..+... ....++++|+.++.|+.+|.+.|.+..
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 115 PNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred ccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHhh
Confidence 7432 111112211111 124578899999999999999987764
No 218
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=98.29 E-value=3.7e-06 Score=74.04 Aligned_cols=101 Identities=16% Similarity=0.128 Sum_probs=57.6
Q ss_pred EEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEeccccCC
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVTN 382 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~~ 382 (457)
|+++|.+|||||||+|+|.+.... ....|.+......+.. ...+.++||||...... -..++.++..++ ...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d-~~~ 79 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFS-EDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD-AAD 79 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCC-cCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE-CCC
Confidence 799999999999999999987542 2223333222222222 23688999999643211 135667666443 322
Q ss_pred ccc---HHHHHHHHHHh---cCcceehhhcCCCCC
Q 012726 383 LED---AAEHIGEVLKR---VKKEHLKRAYKIKDW 411 (457)
Q Consensus 383 l~~---~~~~i~~~L~~---~~~~~l~~~y~i~~~ 411 (457)
... ....+..++.. ...+.+.+.++.|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~ 114 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCcccc
Confidence 211 11222223221 245778888998853
No 219
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.29 E-value=5.3e-06 Score=77.04 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=68.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|.+.+..... ..+..|.+.....+.++. .+.++||||..... .-..++.++..+
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 479999999999999999999876532 233334333333334432 46799999964322 114567666643
Q ss_pred cccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 378 VRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
+ ..+. .....++..+.... ..+.+...++.|-.++ ..+....+++..|.
T Consensus 81 d-~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 137 (188)
T cd04125 81 D-VTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNI 137 (188)
T ss_pred E-CcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCC
Confidence 3 3222 22222222222222 2467888899884322 23444566776663
No 220
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.29 E-value=1.1e-06 Score=84.92 Aligned_cols=61 Identities=20% Similarity=0.224 Sum_probs=45.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC--CCceecCCCCceeEE-EEEE-c----CCcEEEEecCCcccCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK--NVCKVAPIPGETKVW-QYIT-L----TKRIFLIDCPGVVYQNK 366 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~--~~~~vs~~pg~T~~~-~~~~-~----~~~i~liDtPGi~~~~~ 366 (457)
-.-|+++|.+++|||||+|.|++. ........+.||+.. .+.. . +..+.++||||+..+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~ 75 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRER 75 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCcccc
Confidence 345899999999999999999998 443344557788753 3322 1 35799999999987643
No 221
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.29 E-value=2.2e-06 Score=77.75 Aligned_cols=113 Identities=16% Similarity=0.119 Sum_probs=65.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCC-----CCCccceEEEecccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRV 380 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~ 380 (457)
++|+++|.+|||||||++.+.........|.-|.. ...+.. .-.+.|+||||..... .-..+|.++..++..
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~--~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~ 78 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcc--eEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCC
Confidence 47999999999999999999654432222222221 122222 3468999999974321 125678888755443
Q ss_pred CC--cccHHHHHHHHHHhc---CcceehhhcCCCCCC--CHHHHHHHH
Q 012726 381 TN--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 381 ~~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
+. +.+....+..++... ..+.+...||+|-.. ..+++.+.+
T Consensus 79 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 126 (159)
T cd04150 79 DRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKL 126 (159)
T ss_pred CHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHh
Confidence 22 333334444444332 357788889998422 234554444
No 222
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.28 E-value=1.2e-05 Score=78.69 Aligned_cols=137 Identities=18% Similarity=0.180 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhc---CccceEEEEeecCCCchHHHHHHHhCCCCceec-----CCC---------------------
Q 012726 288 GSLLSVLRQFARLKS---DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVA-----PIP--------------------- 338 (457)
Q Consensus 288 ~~Li~~L~~~~~~~~---~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs-----~~p--------------------- 338 (457)
-.|++.|.++..... .-....+++||-.++||||++++|.+......+ ..|
T Consensus 5 ~~l~~~i~~l~~~~G~~~~i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~ 84 (240)
T smart00053 5 IPLVNKLQDAFSALGQEKDLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGK 84 (240)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCc
Confidence 345666655542211 123457999999999999999999986421111 000
Q ss_pred ------------------------CceeEEEEEEc----CCcEEEEecCCcccC---CC-C---------------Cccc
Q 012726 339 ------------------------GETKVWQYITL----TKRIFLIDCPGVVYQ---NK-D---------------SETD 371 (457)
Q Consensus 339 ------------------------g~T~~~~~~~~----~~~i~liDtPGi~~~---~~-~---------------~e~d 371 (457)
+++.+...+.+ ...+.||||||+... .. . .+.+
T Consensus 85 ~~~~~~~v~~~i~~~~~~~~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~ 164 (240)
T smart00053 85 KFTDFDEVRNEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEEC 164 (240)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccC
Confidence 00001111111 147899999999743 11 1 1345
Q ss_pred eEEEeccccCCcccHH-HHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHH
Q 012726 372 IVLKGVVRVTNLEDAA-EHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKS 424 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~-~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r 424 (457)
++|..+....++.... ..+...+...+.+.+.+.+|+|..+...+++..+..+
T Consensus 165 IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D~~~~~~~~~~~~~~~ 218 (240)
T smart00053 165 LILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLDLMDEGTDARDILENK 218 (240)
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCCCCCccHHHHHHHhCC
Confidence 7887666555555443 4666677778889999999999765555566655544
No 223
>PRK04213 GTP-binding protein; Provisional
Probab=98.28 E-value=4.2e-06 Score=78.46 Aligned_cols=121 Identities=17% Similarity=0.023 Sum_probs=70.4
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHH-hhhccCEEEEEeeCCCCCCC-----------CCHHHHHHHHHhcCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYK-VIDSSDVVVQVLDARDPQGT-----------RCHHLERHLKEHCKHK 244 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k-~I~~sDvIL~VvDardp~~s-----------~~~~l~k~L~~~~~~K 244 (457)
..+.|++|+.......-......+.++...+. .++.+|+|++|+|+...... .+..+...+.. .+.
T Consensus 54 ~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 131 (201)
T PRK04213 54 FILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGI 131 (201)
T ss_pred eEEEeCCccccccccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCC
Confidence 34678998632110000000111333434433 56788999999998653211 11233444443 479
Q ss_pred cEEEEeecCCCCChh--hHHHHHHHHHhcCC-----eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 245 HMILLLNKCDLVPAW--ATKGWLRVLSKEYP-----SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 245 ~vIlVLNKiDLvp~~--~~~~wl~~l~~~~p-----~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
|+++|+||+|+.+.. ....+.+.+....+ ..++++||+++ |+++|++.|.+.+++
T Consensus 132 p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 132 PPIVAVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CeEEEEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 999999999997654 23344443332101 13678999999 999999999876643
No 224
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=98.28 E-value=2.3e-06 Score=76.59 Aligned_cols=90 Identities=18% Similarity=0.180 Sum_probs=61.4
Q ss_pred HHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH----hcCCCcEEEEeecCCCCCh-hhHHHHHHHHHhcCCeeEEEee
Q 012726 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 206 l~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~----~~~~K~vIlVLNKiDLvp~-~~~~~wl~~l~~~~p~~~f~iS 280 (457)
+...+..+|++++|+|+.++.+. ..+..++.. ...+.|+++|+||+|+... .....+...+.+......+.+|
T Consensus 66 ~~~~~~~~~~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S 143 (161)
T cd01861 66 IPSYIRDSSVAVVVYDITNRQSF--DNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETS 143 (161)
T ss_pred HHHHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEe
Confidence 34467899999999999765421 223333322 1225899999999999532 2333444445444456678899
Q ss_pred ccCCCChHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQF 297 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~ 297 (457)
+.++.|+++|.+.|.+.
T Consensus 144 a~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 144 AKAGHNVKELFRKIASA 160 (161)
T ss_pred CCCCCCHHHHHHHHHHh
Confidence 99999999999988653
No 225
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.28 E-value=4.3e-06 Score=88.06 Aligned_cols=110 Identities=14% Similarity=0.112 Sum_probs=73.2
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-CCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
+..+.|+||.. .+.......+..+|++++|+|++++. ..........+.. ...+++++|+||+|
T Consensus 86 ~i~liDtPG~~--------------~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i~~iiVVlNK~D 150 (411)
T PRK04000 86 RVSFVDAPGHE--------------TLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGIKNIVIVQNKID 150 (411)
T ss_pred EEEEEECCCHH--------------HHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEEeec
Confidence 34567888853 34456677778899999999999875 3333333344433 22357899999999
Q ss_pred CCChhhHH----HHHHHHHhcC--CeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 255 LVPAWATK----GWLRVLSKEY--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 255 Lvp~~~~~----~wl~~l~~~~--p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+++..... .....+.... ...++++||.++.|+++|++.|.+.++.
T Consensus 151 l~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 151 LVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred cccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 98753321 2222222211 2456889999999999999999887654
No 226
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.27 E-value=1.2e-06 Score=87.71 Aligned_cols=104 Identities=23% Similarity=0.277 Sum_probs=66.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce---ecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK---VAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~---vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..-|++|||+|+|||||||+|++..... ....-.+|...-..+-+..+.+.||-||+..-+- .+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLeeVae 257 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAE 257 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhh
Confidence 4568999999999999999999654421 1111123333333334557899999999875332 47
Q ss_pred cceEEEeccccC-CcccHHHHHHHHHHhcCcc-------eehhhcCCC
Q 012726 370 TDIVLKGVVRVT-NLEDAAEHIGEVLKRVKKE-------HLKRAYKIK 409 (457)
Q Consensus 370 ~dlvL~gvv~~~-~l~~~~~~i~~~L~~~~~~-------~l~~~y~i~ 409 (457)
+|++|+.++-.. +.+.....+...|+.++-+ .+.+.+++|
T Consensus 258 adlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD 305 (410)
T KOG0410|consen 258 ADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKID 305 (410)
T ss_pred cceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccc
Confidence 899998544332 2233445566777777653 355667776
No 227
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.27 E-value=3e-06 Score=75.90 Aligned_cols=120 Identities=21% Similarity=0.100 Sum_probs=64.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC-----CcEEEEecCCcccCCC-----CCccceEE
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT-----KRIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~-----~~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
++|+++|.+|||||||+|.+++..... ...|..+.+. ..+.+. -.+.|+||||.-.... -..++.++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTK-DYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 479999999999999999999764421 1122222222 222222 2588999999532111 13456555
Q ss_pred Eecccc--CCcccHHHHHHHHHHhc-CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 375 KGVVRV--TNLEDAAEHIGEVLKRV-KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~--~~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
...+.. +.+......+..+...+ +.+.+...+++|-... ..+-...+++..|.
T Consensus 80 ~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 138 (162)
T cd04106 80 LVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQL 138 (162)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCC
Confidence 533222 12222222222222222 4577888899884321 12334556666654
No 228
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.27 E-value=6.4e-06 Score=74.04 Aligned_cols=119 Identities=13% Similarity=0.144 Sum_probs=63.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCC---CCceeEEEEEEcC----CcEEEEecCCcccCC-----CCCccceEE
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPI---PGETKVWQYITLT----KRIFLIDCPGVVYQN-----KDSETDIVL 374 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~---pg~T~~~~~~~~~----~~i~liDtPGi~~~~-----~~~e~dlvL 374 (457)
++|+++|.+|||||||+++|......-.... .|.......+.++ -.+.++||||.-... .-..+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 4799999999999999999986421111112 1211111122221 267899999964321 114577777
Q ss_pred EeccccCCcccH---HHHHHHHHHh-cCcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 375 KGVVRVTNLEDA---AEHIGEVLKR-VKKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 375 ~gvv~~~~l~~~---~~~i~~~L~~-~~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
..++ ..+.... ...+..+... ...+.+.+.++.|-... ..+....++...|
T Consensus 81 ~v~d-~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 138 (164)
T cd04101 81 LVYD-VSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQ 138 (164)
T ss_pred EEEE-CcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 7443 3222111 1222222222 13577888899874222 2223345555554
No 229
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.27 E-value=3.8e-06 Score=79.40 Aligned_cols=172 Identities=17% Similarity=0.130 Sum_probs=106.8
Q ss_pred CCCCccccchhhhhhhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhh
Q 012726 109 KKLPFSLLNDHQKQARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDL 188 (457)
Q Consensus 109 ~~~p~~ll~~~~~~~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~ 188 (457)
..+|-..+.|-+=.+|.|+.++...+.++|+|.-=+-.+.+..+.. . -+|+... ...++|.||+--.
T Consensus 17 ~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~--i-------Nff~~~~----~~~lVDlPGYGyA 83 (200)
T COG0218 17 KQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQL--I-------NFFEVDD----ELRLVDLPGYGYA 83 (200)
T ss_pred hhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccce--e-------EEEEecC----cEEEEeCCCcccc
Confidence 4566666666666689999999999999997731111111111110 0 0111111 1236888886421
Q ss_pred hhhhhhcccchHHHHHHHHHhh---hccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHH
Q 012726 189 VRHTMFEKGQSKRIWGELYKVI---DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWL 265 (457)
Q Consensus 189 ~~~~l~~~~~~kr~~~el~k~I---~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl 265 (457)
. - .+....+.-+.+...+ .+-..+++|+|+|.++...+.++.+++.. .+.|+++|+||+|.++......-+
T Consensus 84 k-v---~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l 157 (200)
T COG0218 84 K-V---PKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLE--LGIPVIVVLTKADKLKKSERNKQL 157 (200)
T ss_pred c-C---CHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEccccCChhHHHHHH
Confidence 1 0 0111122223344444 34578899999999999989999999986 489999999999999875443333
Q ss_pred HHHH----hcCCee--EEEeeccCCCChHHHHHHHHHHHH
Q 012726 266 RVLS----KEYPSL--AFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 266 ~~l~----~~~p~~--~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.... ...+.. ++..|+.++.|+++|...|.+.+.
T Consensus 158 ~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 158 NKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLK 197 (200)
T ss_pred HHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhh
Confidence 3333 223321 555688899999999999887764
No 230
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.27 E-value=4.4e-06 Score=92.10 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=74.0
Q ss_pred CCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecCCCC
Q 012726 178 EGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLV 256 (457)
Q Consensus 178 ~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKiDLv 256 (457)
.++|+||.. ++.+.+...+..+|++++|+|+..++.....+....+... +.+ +|+|+||+|++
T Consensus 54 ~~IDtPGhe--------------~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l--gi~~iIVVlNKiDlv 117 (614)
T PRK10512 54 GFIDVPGHE--------------KFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT--GNPMLTVALTKADRV 117 (614)
T ss_pred EEEECCCHH--------------HHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCeEEEEEECCccC
Confidence 467888864 3345566778899999999999887655544444555432 455 57999999998
Q ss_pred ChhhHH----HHHHHHHhcC--CeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 257 PAWATK----GWLRVLSKEY--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 257 p~~~~~----~wl~~l~~~~--p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+++... .+.+.+.... ...+|++||.+|.|+++|++.|.++...
T Consensus 118 ~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 118 DEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 754332 2333333221 2457889999999999999999877643
No 231
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.27 E-value=5.1e-06 Score=90.03 Aligned_cols=123 Identities=14% Similarity=0.147 Sum_probs=82.8
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC--CCceecCC-------------------CCceeEEEEE---EcCCcEEEEecCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK--NVCKVAPI-------------------PGETKVWQYI---TLTKRIFLIDCPG 360 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~--~~~~vs~~-------------------pg~T~~~~~~---~~~~~i~liDtPG 360 (457)
+..+|++||++|+|||||+++|+.. .....+.+ -|.|...... .-+..+.|+||||
T Consensus 10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3568999999999999999998631 11111111 1222222111 1245789999999
Q ss_pred cccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 361 VVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 361 i~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
....... ..+|.++..+.....+......+..++...+.+.+...|++|-. .+.+++++.+....|.
T Consensus 90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~~i~~~l~~ 162 (527)
T TIGR00503 90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLDEVENELKI 162 (527)
T ss_pred hhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHHHHHHHhCC
Confidence 8532221 35788888676666665555666677777778899999999954 4788888988888775
No 232
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=98.26 E-value=8.8e-06 Score=73.70 Aligned_cols=119 Identities=14% Similarity=0.072 Sum_probs=65.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++|+++|.+|||||||++.+.+...... .+..|.+.....+.++. .+.|+||||...... -..++.++..+
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 82 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY 82 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence 6899999999999999999997654221 11222222222233332 578999999643211 13566666643
Q ss_pred cccCCcccHHHHHHHHHHh---c---CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 378 VRVTNLEDAAEHIGEVLKR---V---KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~~~l~~~~~~i~~~L~~---~---~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
+ ..+. +....+..++.. . ..+.+.+.+++|-... ..+-...+|+..+.
T Consensus 83 d-~~~~-~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 139 (166)
T cd04122 83 D-ITRR-STYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGL 139 (166)
T ss_pred E-CCCH-HHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC
Confidence 3 3222 111223333322 1 2457788889884221 23445667776654
No 233
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=98.26 E-value=6e-06 Score=74.87 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=67.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||++.+.+..... ..+.+|+......+.++. .+.|+||||--.... -..++.++.
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 83 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL 83 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence 35789999999999999999998755422 122223221112233322 467899999542211 134455543
Q ss_pred e--ccccCCcccHHHHHHHHHHhc------CcceehhhcCCCCCC--CHHHHHHHHHHHcCC
Q 012726 376 G--VVRVTNLEDAAEHIGEVLKRV------KKEHLKRAYKIKDWV--DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 g--vv~~~~l~~~~~~i~~~L~~~------~~~~l~~~y~i~~~~--~~~efL~~la~r~g~ 427 (457)
. +...+.+......+..++..+ ..+.+...+|+|-.. -..+-+..+++..+.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 145 (170)
T cd04116 84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGD 145 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCC
Confidence 2 222222333334444444432 236788889988532 123445666766664
No 234
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=98.26 E-value=7.2e-06 Score=75.78 Aligned_cols=119 Identities=17% Similarity=0.139 Sum_probs=65.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE-EEEEcC--C--cEEEEecCCcccCC-----CCCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW-QYITLT--K--RIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~-~~~~~~--~--~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
++|+++|.+|||||||+|++.+.... ....|.+..+. ..+... . .+.++||||..... .-..+|.++..
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~-~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFP-EEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 47999999999999999999976542 11222211111 122222 2 47899999953211 12456777764
Q ss_pred ccccCCc---ccHHH-HHHHHHHhc-CcceehhhcCCCCCCC-------HHHHHHHHHHHcCC
Q 012726 377 VVRVTNL---EDAAE-HIGEVLKRV-KKEHLKRAYKIKDWVD-------ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l---~~~~~-~i~~~L~~~-~~~~l~~~y~i~~~~~-------~~efL~~la~r~g~ 427 (457)
++ ..+. .+... ++..+.... +.+.+.+.++.|-... ..+-.+.++...|.
T Consensus 80 ~d-~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~ 141 (187)
T cd04132 80 YA-VDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA 141 (187)
T ss_pred EE-CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC
Confidence 33 3322 22211 222222211 3477888888874221 13456667777765
No 235
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.26 E-value=6.3e-06 Score=75.96 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=63.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
..++|+++|.+|||||||++.+....... ..|.+..+...+.. ...+.++||||...... -..++.++..++
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D 89 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESVT--TIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVD 89 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCCC--cCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEE
Confidence 46899999999999999999996443322 23322222222222 23688999999743321 246777777444
Q ss_pred ccC--CcccHHHHHHHHHHhc---CcceehhhcCCCC
Q 012726 379 RVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKD 410 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~ 410 (457)
..+ .+++....+..++... ..+.+...++.|-
T Consensus 90 ~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl 126 (175)
T smart00177 90 SNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDL 126 (175)
T ss_pred CCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCc
Confidence 332 1333334444454432 3578889999884
No 236
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=98.26 E-value=2.1e-06 Score=76.84 Aligned_cols=89 Identities=24% Similarity=0.224 Sum_probs=56.0
Q ss_pred HhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHH-----hcCCeeEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~-----~~~p~~~f~i 279 (457)
..+..+|++++|+|+.++..- ....+.+.+.. ...+.|+++|+||+|+............+. ......++.+
T Consensus 63 ~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 142 (160)
T cd04156 63 CYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPC 142 (160)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEec
Confidence 356789999999999877521 11122233321 114789999999999964322222222221 1112346788
Q ss_pred eccCCCChHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~ 296 (457)
||+++.|++++++.|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999988753
No 237
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=98.25 E-value=2.9e-06 Score=76.24 Aligned_cols=88 Identities=20% Similarity=0.168 Sum_probs=56.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcC----CeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~----p~~~f~iS 280 (457)
..+..+|++|+|+|+.++.... ...+...+.. ...++|+++|+||+|+..........+.+.... ...+|++|
T Consensus 62 ~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd04151 62 CYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTS 141 (158)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEee
Confidence 4567899999999997653211 1122222221 124789999999999975432233333332111 13578899
Q ss_pred ccCCCChHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLR 295 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~ 295 (457)
|+++.|+++|++.|.
T Consensus 142 a~~~~gi~~l~~~l~ 156 (158)
T cd04151 142 AIKGEGLDEGMDWLV 156 (158)
T ss_pred ccCCCCHHHHHHHHh
Confidence 999999999988874
No 238
>PTZ00099 rab6; Provisional
Probab=98.25 E-value=3.3e-06 Score=78.60 Aligned_cols=92 Identities=18% Similarity=0.142 Sum_probs=59.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChh-h-HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~-~-~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+|||.||+||.... + ..... .+...+....|.+||+++
T Consensus 49 ~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~e~~-~~~~~~~~~~~e~SAk~g 127 (176)
T PTZ00099 49 YIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGM-QKAQEYNTMFHETSAKAG 127 (176)
T ss_pred HhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCCCHHHHH-HHHHHcCCEEEEEECCCC
Confidence 4689999999999977543211 12222222222467889999999996321 1 11111 222334455678999999
Q ss_pred CChHHHHHHHHHHHHhh
Q 012726 285 FGKGSLLSVLRQFARLK 301 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~ 301 (457)
.|+.++++.|.+.++..
T Consensus 128 ~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 128 HNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999998888653
No 239
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=98.25 E-value=3.2e-06 Score=89.98 Aligned_cols=105 Identities=25% Similarity=0.301 Sum_probs=71.1
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+... ...+- ..-++..+..+..+|++|+|+|+.++....+.. .+.. ..++|+++|+||+||.
T Consensus 265 i~l~DT~G~~~~-~~~ie-----~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~---~l~~-~~~~piiiV~NK~DL~ 334 (449)
T PRK05291 265 LRLIDTAGIRET-DDEVE-----KIGIERSREAIEEADLVLLVLDASEPLTEEDDE---ILEE-LKDKPVIVVLNKADLT 334 (449)
T ss_pred EEEEeCCCCCCC-ccHHH-----HHHHHHHHHHHHhCCEEEEEecCCCCCChhHHH---HHHh-cCCCCcEEEEEhhhcc
Confidence 456899998531 11000 112344567789999999999998887544322 2222 3478999999999998
Q ss_pred ChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 257 p~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+..... ......++.+||+++.|+++|++.|.+.+
T Consensus 335 ~~~~~~-------~~~~~~~i~iSAktg~GI~~L~~~L~~~l 369 (449)
T PRK05291 335 GEIDLE-------EENGKPVIRISAKTGEGIDELREAIKELA 369 (449)
T ss_pred ccchhh-------hccCCceEEEEeeCCCCHHHHHHHHHHHH
Confidence 654321 12234567789999999999999998765
No 240
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.24 E-value=7.6e-06 Score=85.98 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=70.9
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-CCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
..++|+||..+ +...+...+..+|++|+|+||.++. ..........+.. ...+++|+|+||+|+
T Consensus 82 i~liDtPGh~~--------------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~-~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 82 VSFVDAPGHET--------------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEI-IGIKNIVIVQNKIDL 146 (406)
T ss_pred EEEEECCCHHH--------------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHH-cCCCeEEEEEEcccc
Confidence 34678887642 3344556677899999999999765 3332222233332 224678999999999
Q ss_pred CChhhHH----HHHHHHHhcC--CeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 256 VPAWATK----GWLRVLSKEY--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 256 vp~~~~~----~wl~~l~~~~--p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
++.+... ...+.+.... ...++++||.++.|+++|++.|...++.
T Consensus 147 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 147 VSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred CCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 8754322 1122222211 3457889999999999999999987653
No 241
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=98.24 E-value=6.5e-06 Score=74.82 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=63.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.||||||||++++.+..... ..+..+.. -...+.++ -.+.++||||......- ..++.++..+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 579999999999999999998655321 12221111 11222333 25689999996543211 2344444322
Q ss_pred c--ccCCcccHHHHHHHHHH---hcCcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 378 V--RVTNLEDAAEHIGEVLK---RVKKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 378 v--~~~~l~~~~~~i~~~L~---~~~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
. +.+.+.....+...+.. .-+.+.+...+++|-... ..+....++++.+
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~ 137 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWG 137 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcC
Confidence 2 22233333333333332 224567788899884321 1233455677766
No 242
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=98.24 E-value=2.6e-06 Score=76.79 Aligned_cols=86 Identities=19% Similarity=0.209 Sum_probs=56.0
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-----hcCCCcEEEEeecCCCCChhhHHHHHHHHHhc------CCeeE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------YPSLA 276 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~------~p~~~ 276 (457)
..+..+|++++|+|+.++.. ......++.. ...+.|+++|+||+|+.+........+.+... ....+
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRER--FEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred HHhCCCCEEEEEEECchHHH--HHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEE
Confidence 45789999999999976531 1122222221 12468999999999987643222222233221 23467
Q ss_pred EEeeccCCCChHHHHHHHH
Q 012726 277 FHASINKSFGKGSLLSVLR 295 (457)
Q Consensus 277 f~iSa~~~~Gi~~Li~~L~ 295 (457)
+.+||+++.|++++++.|.
T Consensus 147 ~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 147 LPVSALEGTGVREGIEWLV 165 (167)
T ss_pred EEeeCCCCcCHHHHHHHHh
Confidence 8889999999999988874
No 243
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.24 E-value=3.4e-06 Score=76.65 Aligned_cols=92 Identities=13% Similarity=0.118 Sum_probs=60.6
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChhhH---HHHHHHHHhcCC--eeEEEe
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWAT---KGWLRVLSKEYP--SLAFHA 279 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~---~~wl~~l~~~~p--~~~f~i 279 (457)
...+..+|++++|+|+.++.+... ..+...+.....+.|+++|+||+|+.+.... ...+..+...+. ...+.+
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 144 (166)
T cd01893 65 AAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVEC 144 (166)
T ss_pred hhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEe
Confidence 345688999999999987654322 1223334433457899999999999765431 222222222222 246788
Q ss_pred eccCCCChHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~ 298 (457)
||.++.|++++.+.+.+.+
T Consensus 145 Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 145 SAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred ccccccCHHHHHHHHHHHh
Confidence 9999999999998887653
No 244
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=98.23 E-value=2.4e-05 Score=75.30 Aligned_cols=103 Identities=15% Similarity=0.116 Sum_probs=56.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCc--eecCCCCceeEEEEEEc---CCcEEEEecCCccc---CCCCC-ccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVC--KVAPIPGETKVWQYITL---TKRIFLIDCPGVVY---QNKDS-ETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~--~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~---~~~~~-e~dlvL~gv 377 (457)
++|+++|.+|||||||++.++..... ...+..+.+.....+.+ ...+.++||||... ..... .+|.++..+
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~ 80 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVY 80 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEE
Confidence 37999999999999999999765442 12222221111122222 23578999999851 11123 567766633
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIK 409 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~ 409 (457)
...+ .+......+..+... ...+.+.+.+++|
T Consensus 81 d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~D 117 (221)
T cd04148 81 SVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSD 117 (221)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChh
Confidence 3222 222222223323222 2457788888877
No 245
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=98.23 E-value=5.9e-06 Score=73.47 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=65.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
.+|+++|.+|||||||+|+|++..... ...+.++... ..+.... .+.++||||-..... -..++.++..
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNE-KHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCC-CcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 378999999999999999999866532 2222222222 1222222 578999999532211 1356766664
Q ss_pred ccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 377 VVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 377 vv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
++..+ .+.....++.++.... ..+.+...+++|.... ..+.++.+++..|
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~ 136 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVG 136 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 43221 2222223333333333 3578888899885321 2334455565554
No 246
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.23 E-value=3e-06 Score=83.46 Aligned_cols=106 Identities=20% Similarity=0.178 Sum_probs=73.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----CCC--------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-----KDS-------- 368 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~-----~~~-------- 368 (457)
.....++++|.+|||||||||.++..+... .++.+|-|+..+.+..+...+++|.||+.... +.+
T Consensus 134 ~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 134 DKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 346789999999999999999999876543 44589999999999999999999999954432 110
Q ss_pred --cc-ce--EEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 369 --ET-DI--VLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 369 --e~-dl--vL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
|. .+ ++..+..+-.+..+...+.+++.+-+-++-.++.++|
T Consensus 214 ~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~D 259 (320)
T KOG2486|consen 214 LLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCD 259 (320)
T ss_pred HHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhh
Confidence 11 11 1111333333434444455677777777777777776
No 247
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.23 E-value=6.4e-06 Score=72.19 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=75.2
Q ss_pred HHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEe
Q 012726 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 200 kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~i 279 (457)
++.+..+.-...++|+|++|.-|.+|.+.+++.+.... .+|+|-|++|+||.....+..-.++|.+.....+|.+
T Consensus 52 ~~~Y~aL~tt~~dadvi~~v~~and~~s~f~p~f~~~~-----~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~ 126 (148)
T COG4917 52 PRWYHALITTLQDADVIIYVHAANDPESRFPPGFLDIG-----VKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFET 126 (148)
T ss_pred hHHHHHHHHHhhccceeeeeecccCccccCCccccccc-----ccceEEEEecccccchHhHHHHHHHHHHcCCcceEEE
Confidence 44557777788999999999999999998888776654 4679999999999965555555566666677778889
Q ss_pred eccCCCChHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~ 297 (457)
|+.++.|+++|...|...
T Consensus 127 s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 127 SAVDNQGVEELVDYLASL 144 (148)
T ss_pred eccCcccHHHHHHHHHhh
Confidence 999999999999888643
No 248
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=98.23 E-value=6.8e-06 Score=77.81 Aligned_cols=116 Identities=14% Similarity=0.188 Sum_probs=64.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCC--C-----------CC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQN--K-----------DS 368 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~--~-----------~~ 368 (457)
++|+++|.+|||||||||.+.+..... ...|.++.+. ..+..+. .+.|+||||..... . -.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~-~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPE-EYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCc-ccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 478999999999999999999765422 2344443222 2233333 46799999974311 0 13
Q ss_pred ccceEEEeccccCC--cccHHHHHHHHHHh-----cCcceehhhcCCCCCCC---HHHHHHHHHH
Q 012726 369 ETDIVLKGVVRVTN--LEDAAEHIGEVLKR-----VKKEHLKRAYKIKDWVD---ENDFLLQLCK 423 (457)
Q Consensus 369 e~dlvL~gvv~~~~--l~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~~~---~~efL~~la~ 423 (457)
.+|+++..++..+. +......+..++.. -+.+.+...|++|-... ..+.++.++.
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~ 144 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVR 144 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHH
Confidence 56777764443321 11111222223332 23578889999985321 2334555554
No 249
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=98.22 E-value=7.3e-06 Score=74.17 Aligned_cols=90 Identities=16% Similarity=0.116 Sum_probs=60.3
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
...+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+|+.+.. ...... +...+....+.+||+++.
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~-~~~~~~~~~~~~Sa~~~~ 144 (161)
T cd04124 67 ASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFN-FAEKHNLPLYYVSAADGT 144 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHH-HHHHcCCeEEEEeCCCCC
Confidence 346789999999999987654221 12223333333578999999999996432 222222 223334556788999999
Q ss_pred ChHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFA 298 (457)
Q Consensus 286 Gi~~Li~~L~~~~ 298 (457)
|+.++++.+.+..
T Consensus 145 gv~~l~~~l~~~~ 157 (161)
T cd04124 145 NVVKLFQDAIKLA 157 (161)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999887654
No 250
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.22 E-value=3.2e-06 Score=93.17 Aligned_cols=104 Identities=15% Similarity=0.069 Sum_probs=71.7
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEEEc----CCcEEEEecCCcccCC-----CCCccceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYITL----TKRIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~~~----~~~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
-|+++|.+++|||||+|+|++..... .....|.|.+..+..+ +..+.||||||.-... .-..+|+++..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLV 81 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLV 81 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999854322 2234688877654433 3467899999963221 12467888886
Q ss_pred ccccCCcccHHHHHHHHHHhcCcce-ehhhcCCCCC
Q 012726 377 VVRVTNLEDAAEHIGEVLKRVKKEH-LKRAYKIKDW 411 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~~~~~~~-l~~~y~i~~~ 411 (457)
+...+.+.........++...+.+. +.+.+|+|..
T Consensus 82 Vda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv 117 (614)
T PRK10512 82 VACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV 117 (614)
T ss_pred EECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence 6655555555545556777777664 6899999954
No 251
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=2.1e-06 Score=82.86 Aligned_cols=82 Identities=27% Similarity=0.403 Sum_probs=56.1
Q ss_pred CCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceec-------CCCCceeEEE---EEE---c
Q 012726 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVA-------PIPGETKVWQ---YIT---L 349 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs-------~~pg~T~~~~---~~~---~ 349 (457)
.-.|++.+++.++..+- ..+-.++|+|||.++.||||+||+|...++...+ ++|.||.--. .+. .
T Consensus 25 gyvGidtI~~Qm~~k~m--k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gV 102 (336)
T KOG1547|consen 25 GYVGIDTIIEQMRKKTM--KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGV 102 (336)
T ss_pred ccccHHHHHHHHHHHHH--hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecce
Confidence 34588999888876543 2345789999999999999999999976654321 3455543211 111 1
Q ss_pred CCcEEEEecCCcccCCC
Q 012726 350 TKRIFLIDCPGVVYQNK 366 (457)
Q Consensus 350 ~~~i~liDtPGi~~~~~ 366 (457)
.-++.+|||||+...-.
T Consensus 103 klkltviDTPGfGDqIn 119 (336)
T KOG1547|consen 103 KLKLTVIDTPGFGDQIN 119 (336)
T ss_pred EEEEEEecCCCcccccC
Confidence 12689999999987643
No 252
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=98.22 E-value=1.3e-05 Score=72.10 Aligned_cols=118 Identities=12% Similarity=0.045 Sum_probs=63.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
++|+++|.||||||||++.+........ .+.++.+ ...+.++. .+.|+||||.-....- ..++.++..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEK--YDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 5799999999999999999987544221 1112111 11222222 4678999996332111 345655542
Q ss_pred ccc--cCCcccHHHHHHHHHHh---cCcceehhhcCCCCCC--C-HHHHHHHHHHHcC
Q 012726 377 VVR--VTNLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--D-ENDFLLQLCKSTG 426 (457)
Q Consensus 377 vv~--~~~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~-~~efL~~la~r~g 426 (457)
.+- .+.+.+....+..+... -+.+.+.+.++.|... . ..+....+++..|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~ 137 (163)
T cd04176 80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWG 137 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhC
Confidence 222 22233333333334333 2457788889988422 1 1223456666554
No 253
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.22 E-value=3.9e-06 Score=80.07 Aligned_cols=104 Identities=20% Similarity=0.116 Sum_probs=62.4
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCcee---c---------------CCCCceeEEEEEEc--------CCcEEEEecCCc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKV---A---------------PIPGETKVWQYITL--------TKRIFLIDCPGV 361 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~v---s---------------~~pg~T~~~~~~~~--------~~~i~liDtPGi 361 (457)
+|+++|.+++|||||+++|+....... . ..-|+|.....+.+ ...+.++||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 589999999999999999986432111 0 01223321111111 135789999997
Q ss_pred ccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 362 VYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 362 ~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
...... ..+|.++..++..+........+...+.....+.+...+++|..
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence 543211 35678887666554443333333344444567889999999953
No 254
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.21 E-value=9.5e-06 Score=74.29 Aligned_cols=122 Identities=11% Similarity=-0.003 Sum_probs=67.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEc-------------CCcEEEEecCCcccCC-----C
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITL-------------TKRIFLIDCPGVVYQN-----K 366 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~-------------~~~i~liDtPGi~~~~-----~ 366 (457)
.++|+++|.+|||||||+|.+.+..... ..+..|..-....+.. .-.+.|+||||-.... .
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 83 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF 83 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence 4789999999999999999998754321 1122222111111111 1257899999953211 1
Q ss_pred CCccceEEEecccc--CCcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 367 DSETDIVLKGVVRV--TNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 367 ~~e~dlvL~gvv~~--~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
-..++.++..++.. +.+.+...++..+.... +.+.+.+.++.|-.+ -..+-...+|.+.|.
T Consensus 84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 152 (180)
T cd04127 84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGI 152 (180)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCC
Confidence 13566666533322 22222333333333322 456788889988432 123445777777764
No 255
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=98.21 E-value=8.2e-06 Score=77.86 Aligned_cols=119 Identities=16% Similarity=0.073 Sum_probs=67.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC----CcEEEEecCCcccCC-----CCCccceEEE
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT----KRIFLIDCPGVVYQN-----KDSETDIVLK 375 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~----~~i~liDtPGi~~~~-----~~~e~dlvL~ 375 (457)
++|+++|.+|||||||+|.|.+... .....|..+.+. ..+.++ -.+.|+||||-.... .-..+|.++.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~-~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGF-GKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCC-CCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 4789999999999999999997654 222233333232 223332 257899999964321 1146777777
Q ss_pred eccccCCc---ccHHHHHHHHHHhc-----CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKRV-----KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~~-----~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++ ..+. ......+..+.+.. ..+.+.+.+++|-.+ -..+....+++..|.
T Consensus 80 V~D-~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~ 141 (215)
T cd04109 80 VYD-VTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGM 141 (215)
T ss_pred EEE-CCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 443 3332 22222222222222 235677889988432 123456677777763
No 256
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=98.21 E-value=7.6e-06 Score=73.91 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=59.7
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHhc-----CCCcEEEEeecCCCCC-hhhHHHHHHHHHhcC-CeeE
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHC-----KHKHMILLLNKCDLVP-AWATKGWLRVLSKEY-PSLA 276 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~~-----~~K~vIlVLNKiDLvp-~~~~~~wl~~l~~~~-p~~~ 276 (457)
...+..+|.+|+|+|+.++.+. ..+..+ +.... .+.|+++|+||+|+.+ ......-.+.+.+.. ....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 144 (172)
T cd01862 67 VAFYRGADCCVLVYDVTNPKSF--ESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPY 144 (172)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceE
Confidence 3467889999999999876531 122222 22111 2689999999999983 222222223333333 3567
Q ss_pred EEeeccCCCChHHHHHHHHHHHH
Q 012726 277 FHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 277 f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
|.+|+.++.|+.++++.|.+.+-
T Consensus 145 ~~~Sa~~~~gv~~l~~~i~~~~~ 167 (172)
T cd01862 145 FETSAKEAINVEQAFETIARKAL 167 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 88999999999999998876553
No 257
>PRK11058 GTPase HflX; Provisional
Probab=98.21 E-value=6.3e-06 Score=87.15 Aligned_cols=114 Identities=16% Similarity=0.194 Sum_probs=72.0
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCH-HHHHHHHHh-cCCCcEEEEeecCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEH-CKHKHMILLLNKCD 254 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~-~l~k~L~~~-~~~K~vIlVLNKiD 254 (457)
..+.||+|+.......+ -..+....+.+..+|+||+|+|+.+|...... .+.+++... ..++|+|+|+||+|
T Consensus 247 ~~l~DTaG~~r~lp~~l------ve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiD 320 (426)
T PRK11058 247 TVLADTVGFIRHLPHDL------VAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKID 320 (426)
T ss_pred EEEEecCcccccCCHHH------HHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEccc
Confidence 35789999842211111 12244456677899999999999887543322 123444432 23689999999999
Q ss_pred CCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 255 LVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+.+.... .........+. .+.+||++|.|+++|++.|.+.+.
T Consensus 321 L~~~~~~--~~~~~~~~~~~-~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 321 MLDDFEP--RIDRDEENKPI-RVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred CCCchhH--HHHHHhcCCCc-eEEEeCCCCCCHHHHHHHHHHHhh
Confidence 9864221 11111122232 466899999999999999987764
No 258
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.21 E-value=3.1e-06 Score=92.72 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=66.5
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-ceeEEE--EEEcC-------------------CcEEEEecCCccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-ETKVWQ--YITLT-------------------KRIFLIDCPGVVY 363 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-~T~~~~--~~~~~-------------------~~i~liDtPGi~~ 363 (457)
..-|+++|.+|+|||||+|+|++.... ...|| +|++.- ++..+ .++.|+||||.-.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~--~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVA--KREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccc--cccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 345899999999999999999987542 23333 444211 11110 2488999999642
Q ss_pred CC-----CCCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 364 QN-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 364 ~~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
.. ....+|+++..+...+.+.........++...+.+.+...|++|-
T Consensus 82 f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl 133 (590)
T TIGR00491 82 FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDR 133 (590)
T ss_pred HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCc
Confidence 21 114678888766555544444444445666677889999999984
No 259
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.21 E-value=4.4e-06 Score=77.22 Aligned_cols=77 Identities=21% Similarity=0.174 Sum_probs=54.7
Q ss_pred hhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhh----HHHHHHHHHhcC-CeeEEEeeccCC
Q 012726 210 IDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKEY-PSLAFHASINKS 284 (457)
Q Consensus 210 I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~----~~~wl~~l~~~~-p~~~f~iSa~~~ 284 (457)
.+.+|.+++|+|++.++......+.+.+.. .++|+++|+||+|+.+... ...+.+.+.... ...+|.+||+++
T Consensus 98 ~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g 175 (179)
T TIGR03598 98 RENLKGVVLLMDIRHPLKELDLEMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKK 175 (179)
T ss_pred ChhhcEEEEEecCCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCC
Confidence 345789999999998877666655666654 3789999999999986532 233444444432 236788999999
Q ss_pred CChH
Q 012726 285 FGKG 288 (457)
Q Consensus 285 ~Gi~ 288 (457)
.|++
T Consensus 176 ~gi~ 179 (179)
T TIGR03598 176 TGID 179 (179)
T ss_pred CCCC
Confidence 9863
No 260
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=98.21 E-value=4.2e-06 Score=88.31 Aligned_cols=115 Identities=19% Similarity=0.220 Sum_probs=73.1
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC----HHHHHHHHHh---cCCCcEEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC----HHLERHLKEH---CKHKHMIL 248 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~----~~l~k~L~~~---~~~K~vIl 248 (457)
..++.|+||+..-... + +.+..+..+.++++|++|+|+|+.++.+... ..+.+.|... ..++|.|+
T Consensus 207 ~~~laD~PGliega~~-----~--~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IV 279 (424)
T PRK12297 207 SFVMADIPGLIEGASE-----G--VGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIV 279 (424)
T ss_pred eEEEEECCCCcccccc-----c--chHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEE
Confidence 4567889998531111 1 3355566677889999999999965421111 1233333331 13689999
Q ss_pred EeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 249 LLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 249 VLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
|+||+||.... ..+ +.+.+.+...+|.+||.++.|+++|++.|.+.+..
T Consensus 280 V~NK~DL~~~~--e~l-~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~ 328 (424)
T PRK12297 280 VANKMDLPEAE--ENL-EEFKEKLGPKVFPISALTGQGLDELLYAVAELLEE 328 (424)
T ss_pred EEeCCCCcCCH--HHH-HHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999984332 111 22233333457788999999999999999887753
No 261
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.21 E-value=7.5e-06 Score=77.93 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=62.6
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..+.|+||+.. +..++...+..+|++|+|+|+..++......+..++... ..+++|+|+||+
T Consensus 76 ~~~~~liDTpG~~~--------------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~~~~iIvviNK~ 140 (208)
T cd04166 76 KRKFIIADTPGHEQ--------------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-GIRHVVVAVNKM 140 (208)
T ss_pred CceEEEEECCcHHH--------------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-CCCcEEEEEEch
Confidence 33455789999742 223445578899999999999887655444444444332 224578899999
Q ss_pred CCCCh--hhHHHHHHH----HHhc-C-CeeEEEeeccCCCChHH
Q 012726 254 DLVPA--WATKGWLRV----LSKE-Y-PSLAFHASINKSFGKGS 289 (457)
Q Consensus 254 DLvp~--~~~~~wl~~----l~~~-~-p~~~f~iSa~~~~Gi~~ 289 (457)
|+... ......... +... + +..++++||.++.|+.+
T Consensus 141 D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 141 DLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred hcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 99752 111111122 2221 1 24578899999999863
No 262
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=98.20 E-value=3.6e-06 Score=74.71 Aligned_cols=117 Identities=15% Similarity=0.022 Sum_probs=66.7
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC---CcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
+|+++|.+|||||||+|+|++... .+..+.+|.+.. .+..+ -.+.++||||...... -..+++++..+
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 489999999999999999997652 233333333221 22223 2578999999754221 13567666643
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
.... .+.+.......++.. ...+.+...+++|... -..+..+.++.+.+
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 135 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWG 135 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcC
Confidence 3221 122222333333333 2578889999998543 12344555566555
No 263
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=98.20 E-value=1.4e-05 Score=72.65 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=56.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|||||||+|++........ ..| ++.+. ..+.++. .+.++||||-..... -..+++++..
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~-~~~-t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEE-YVP-TVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CCC-ceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 4799999999999999999987654211 111 11111 1223332 367899999754221 1345655553
Q ss_pred ccccCC---cccHHHHHHHHHHhc--CcceehhhcCCCCC
Q 012726 377 VVRVTN---LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW 411 (457)
Q Consensus 377 vv~~~~---l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~ 411 (457)
+ ...+ +.+........+... +.+.+...+++|-.
T Consensus 79 ~-~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~ 117 (174)
T cd04135 79 F-SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLR 117 (174)
T ss_pred E-ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhh
Confidence 3 3222 222222223333332 45677888888743
No 264
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=98.20 E-value=4.7e-06 Score=78.04 Aligned_cols=97 Identities=19% Similarity=0.188 Sum_probs=60.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|++|... +.......+..+|++++|+|+.+........+...+.. .+.|+++|+||+|+
T Consensus 66 ~~~l~DtpG~~~--------------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~Dl 129 (194)
T cd01891 66 KINIVDTPGHAD--------------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINKIDR 129 (194)
T ss_pred EEEEEECCCcHH--------------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH--cCCCEEEEEECCCC
Confidence 345678888643 22334556789999999999987543222233333322 37899999999999
Q ss_pred CChh---hHHHHHHHHHh------cCCeeEEEeeccCCCChH
Q 012726 256 VPAW---ATKGWLRVLSK------EYPSLAFHASINKSFGKG 288 (457)
Q Consensus 256 vp~~---~~~~wl~~l~~------~~p~~~f~iSa~~~~Gi~ 288 (457)
.... ....+.+.+.. .....++.+||++|+|+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 130 PDARPEEVVDEVFDLFIELGATEEQLDFPVLYASAKNGWASL 171 (194)
T ss_pred CCCCHHHHHHHHHHHHHHhCCccccCccCEEEeehhcccccc
Confidence 7432 23344444422 123456788999997764
No 265
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=98.20 E-value=6.2e-06 Score=74.13 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=59.5
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
...+.++|++++|+|+.++.+. ..+..++.. ...+.|+|+|+||+|+.+... .....+.+...+....+.+||.
T Consensus 70 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (164)
T cd04101 70 SNYWESPSVFILVYDVSNKASF--ENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSAL 147 (164)
T ss_pred HHHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence 3456899999999999765321 223334332 224689999999999975432 1222233333444557788999
Q ss_pred CCCChHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQF 297 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~ 297 (457)
++.|+.++++.|.+.
T Consensus 148 ~~~gi~~l~~~l~~~ 162 (164)
T cd04101 148 RGVGYEEPFESLARA 162 (164)
T ss_pred CCCChHHHHHHHHHH
Confidence 999999999887654
No 266
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=98.19 E-value=1.9e-05 Score=72.40 Aligned_cols=121 Identities=12% Similarity=0.054 Sum_probs=70.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCcee-E--EEEEEcCC---cEEEEecCCcccCCC-----CCccce
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK-V--WQYITLTK---RIFLIDCPGVVYQNK-----DSETDI 372 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~-~--~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dl 372 (457)
++.++|+++|.+|||||||++.+++.... +.....|+. . ...+.++. .+.++||+|-..... -..+|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~-~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFS-LNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCC-cccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 45689999999999999999999986643 122222221 1 12233322 467889999643211 146788
Q ss_pred EEEeccccCCcccHHHHHHHHHHhc----CcceehhhcCCCCCCCH---HHHHHHHHHHcCC
Q 012726 373 VLKGVVRVTNLEDAAEHIGEVLKRV----KKEHLKRAYKIKDWVDE---NDFLLQLCKSTGK 427 (457)
Q Consensus 373 vL~gvv~~~~l~~~~~~i~~~L~~~----~~~~l~~~y~i~~~~~~---~efL~~la~r~g~ 427 (457)
++..++. .+. .....+..++..+ +.+.+.+.++.|-.+.. .+-.+.++++.|.
T Consensus 81 ~llv~d~-~~~-~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (169)
T cd01892 81 ACLVYDS-SDP-KSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGL 140 (169)
T ss_pred EEEEEeC-CCH-HHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCC
Confidence 8875443 222 1122333444433 46789999999843221 1224566777664
No 267
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=98.19 E-value=1.2e-05 Score=73.71 Aligned_cols=119 Identities=15% Similarity=0.054 Sum_probs=65.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
+|+++|.+|||||||++++.+.... ...+..|.......+.+. ..+.++||||...... -..+|+++...+
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 5899999999999999999986442 112222211111122222 2688999999643211 146777776444
Q ss_pred ccC--CcccHHHHHHHHHHhcC---cceehhhcCCCCCCC-----HHHHHHHHHHHcC
Q 012726 379 RVT--NLEDAAEHIGEVLKRVK---KEHLKRAYKIKDWVD-----ENDFLLQLCKSTG 426 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~~~---~~~l~~~y~i~~~~~-----~~efL~~la~r~g 426 (457)
..+ .+......+..+++... .+.+.+.+++|-... .++....++++.+
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~ 139 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ 139 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC
Confidence 322 12222233444444432 246788899884221 1333445666554
No 268
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=98.19 E-value=3.7e-06 Score=78.20 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=66.3
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeec
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNK 252 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNK 252 (457)
+..+.|++|.... +.+|. ..+..+|.+++|+|+.++..- ....+.+.+.. ...++|+++|+||
T Consensus 62 ~~~~~D~~G~~~~-----------~~~~~---~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK 127 (184)
T smart00178 62 KFTTFDLGGHQQA-----------RRLWK---DYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNK 127 (184)
T ss_pred EEEEEECCCCHHH-----------HHHHH---HHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeC
Confidence 3345777776421 33343 456799999999999876321 11123333321 1247899999999
Q ss_pred CCCCChhhHHHHHHHHHh-----------cCCeeEEEeeccCCCChHHHHHHHHH
Q 012726 253 CDLVPAWATKGWLRVLSK-----------EYPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 253 iDLvp~~~~~~wl~~l~~-----------~~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
+|+..........+.+.- ..+..+|++||.++.|++++++.|.+
T Consensus 128 ~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 128 IDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred ccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 998532222222233311 12456889999999999999999864
No 269
>CHL00071 tufA elongation factor Tu
Probab=98.19 E-value=1e-05 Score=85.18 Aligned_cols=110 Identities=16% Similarity=0.099 Sum_probs=73.1
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeec
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNK 252 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNK 252 (457)
..+..++|+||.+ .++..+...+..+|++++|+||..........+...+... +.| +|+++||
T Consensus 74 ~~~~~~iDtPGh~--------------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~--g~~~iIvvvNK 137 (409)
T CHL00071 74 NRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV--GVPNIVVFLNK 137 (409)
T ss_pred CeEEEEEECCChH--------------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc--CCCEEEEEEEc
Confidence 3455688999953 4566777888999999999999887665555555555542 677 6789999
Q ss_pred CCCCChhhHH-----HHHHHHHhc-CC---eeEEEeeccCCC------------------ChHHHHHHHHHHHH
Q 012726 253 CDLVPAWATK-----GWLRVLSKE-YP---SLAFHASINKSF------------------GKGSLLSVLRQFAR 299 (457)
Q Consensus 253 iDLvp~~~~~-----~wl~~l~~~-~p---~~~f~iSa~~~~------------------Gi~~Li~~L~~~~~ 299 (457)
+|+++..... ...++|... ++ ..++++||.+++ +...|++.|..+.+
T Consensus 138 ~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 138 EDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 9998754322 222233322 11 456778988775 24567777776543
No 270
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.19 E-value=8.6e-06 Score=88.30 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=81.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC--CCceecCCC-------------------CceeEEE---EEEcCCcEEEEecCCc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK--NVCKVAPIP-------------------GETKVWQ---YITLTKRIFLIDCPGV 361 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~--~~~~vs~~p-------------------g~T~~~~---~~~~~~~i~liDtPGi 361 (457)
..+|+++|++|+|||||+++|+.. .....+.+. |.|.... .-.-+..+.|+||||.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 458999999999999999999731 111111111 2221111 1122447899999997
Q ss_pred ccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 362 VYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 362 ~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
...... ..+|.++..+...+.+......+...+...+.+.+...|++|.. .+..++++.+....|.
T Consensus 90 ~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~l~~i~~~l~~ 161 (526)
T PRK00741 90 EDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGI 161 (526)
T ss_pred hhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHHHHHHHHHhCC
Confidence 543221 35688887676666665555666677777788999999999953 4677888888777764
No 271
>PLN03108 Rab family protein; Provisional
Probab=98.19 E-value=2.2e-05 Score=74.74 Aligned_cols=146 Identities=12% Similarity=0.029 Sum_probs=81.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
.++|+++|.+|||||||+|.|++...... .+..|.+.....+.++. .+.++||||...... -..+|.++..
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv 85 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence 47899999999999999999997654322 22233332222333332 477999999653221 1345655553
Q ss_pred cccc--CCcccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCCcc------cC-Cccc-HHHHHH
Q 012726 377 VVRV--TNLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGKLL------RV-CLFL-HFISWY 441 (457)
Q Consensus 377 vv~~--~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~l~------kg-g~pD-~~~aa~ 441 (457)
++.. +.+.....++..+.... ..+.+...++.|-... ..+..+.+++..|... .| |.-+ ....++
T Consensus 86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~ 165 (210)
T PLN03108 86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA 165 (210)
T ss_pred EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 3222 11222223333333332 3467888888884321 2344566777766431 12 3233 556777
Q ss_pred HHHHHHHhch
Q 012726 442 LFFYDHITNL 451 (457)
Q Consensus 442 ~~l~d~~~g~ 451 (457)
.+++.++.+.
T Consensus 166 ~~~~~~~~~~ 175 (210)
T PLN03108 166 KIYKKIQDGV 175 (210)
T ss_pred HHHHHhhhcc
Confidence 7777776543
No 272
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.18 E-value=1.5e-05 Score=87.49 Aligned_cols=108 Identities=18% Similarity=0.167 Sum_probs=72.0
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKiDL 255 (457)
..+.|+||.. ++.+.+...+..+|++++|+|+.++......+....+.. .+.| +|+|+||+|+
T Consensus 52 v~~iDtPGhe--------------~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~--lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 52 LGFIDVPGHE--------------KFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDL--LGIPHTIVVITKADR 115 (581)
T ss_pred EEEEECCCHH--------------HHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEECCCC
Confidence 3467777753 334555667889999999999987653333322333433 2566 9999999999
Q ss_pred CChhhHH---HHHH-HHHhc-C--CeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 256 VPAWATK---GWLR-VLSKE-Y--PSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 256 vp~~~~~---~wl~-~l~~~-~--p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
++..... ..+. .+... + ...+|++||.++.|+++|.+.|.+++..
T Consensus 116 v~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 116 VNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHh
Confidence 8765322 2222 22221 1 3567889999999999999998877654
No 273
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=98.17 E-value=5.1e-06 Score=76.37 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=55.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHHh-cCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~iS 280 (457)
..+..+|++++|+|+.++.... ...+.+.+... ..+.|+++|+||+|+..........+.+.. .....++.+|
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 157 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCC 157 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecc
Confidence 3467899999999997763211 11223333211 135899999999998643222222233321 1224578899
Q ss_pred ccCCCChHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLR 295 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~ 295 (457)
|.++.|++++++.|.
T Consensus 158 A~~g~gi~e~~~~l~ 172 (174)
T cd04153 158 ALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCCCCHHHHHHHHh
Confidence 999999999988875
No 274
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=98.17 E-value=8.7e-06 Score=74.32 Aligned_cols=104 Identities=11% Similarity=0.013 Sum_probs=59.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|.++.... ....+..|.......+... -.+.++||||.-..... ..+|.++..+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 4799999999999999999985442 2233333332222222222 25789999997543221 2466666533
Q ss_pred cccC--CcccHHHHHHHHHHhc-CcceehhhcCCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
+... .+.....++..+.+.+ ..+.+.+.+++|-
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl 116 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDI 116 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhc
Confidence 3221 1222223333333333 4678888899884
No 275
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=98.17 E-value=8.5e-06 Score=73.84 Aligned_cols=102 Identities=21% Similarity=0.141 Sum_probs=56.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|++++..... ..+..+.+. ...+..+ ..+.++||||......- ..++.++. |
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il-v 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFIL-V 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEE-E
Confidence 679999999999999999999765421 111111111 1122222 25789999997533211 24455554 2
Q ss_pred cccCCc---ccHHHHHHHHHHh------cCcceehhhcCCCCC
Q 012726 378 VRVTNL---EDAAEHIGEVLKR------VKKEHLKRAYKIKDW 411 (457)
Q Consensus 378 v~~~~l---~~~~~~i~~~L~~------~~~~~l~~~y~i~~~ 411 (457)
.++.+. .....++ ..+.. -..+.+.+.++.|..
T Consensus 80 ~d~~~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (165)
T cd04140 80 YSVTSKQSLEELKPIY-ELICEIKGNNIEKIPIMLVGNKCDES 121 (165)
T ss_pred EECCCHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEEEECcccc
Confidence 333222 1222222 22332 234678889999853
No 276
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=98.16 E-value=4.5e-06 Score=76.26 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=57.7
Q ss_pred HhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHH--h---cCCeeEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--K---EYPSLAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~--~---~~p~~~f~i 279 (457)
..+..+|.+++|+|+.++.+- ....+...+.. ...+.|+++|.||+||..........+++. . ..+..++.+
T Consensus 62 ~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (169)
T cd04158 62 HYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGC 141 (169)
T ss_pred HHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeC
Confidence 346789999999999876321 11122223321 123479999999999964322222222221 1 112356678
Q ss_pred eccCCCChHHHHHHHHHHHHh
Q 012726 280 SINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~~ 300 (457)
||+++.|+.++++.|.+.+.+
T Consensus 142 Sa~~g~gv~~~f~~l~~~~~~ 162 (169)
T cd04158 142 DARSGMGLYEGLDWLSRQLVA 162 (169)
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999998766543
No 277
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=98.16 E-value=1.8e-05 Score=71.96 Aligned_cols=100 Identities=19% Similarity=0.170 Sum_probs=55.4
Q ss_pred EEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE-EEEEcCC---cEEEEecCCcccCC-----CCCccceEEEeccc
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW-QYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKGVVR 379 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~-~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~gvv~ 379 (457)
|+++|.+|||||||++++.+.... ....|...... ..+.++. .+.++||||.-... .-..+++++... +
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~-d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFP-EDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICF-S 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCC-CCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEE-E
Confidence 579999999999999999986542 22222221111 1222322 47899999964322 113567666633 3
Q ss_pred cCCc---ccHHH-HHHHHHHhc-CcceehhhcCCCC
Q 012726 380 VTNL---EDAAE-HIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 380 ~~~l---~~~~~-~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
..+. .+... ++..+.... ..+.+.+.++.|-
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl 114 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDL 114 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhh
Confidence 3332 22211 222222221 4577888888874
No 278
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=98.16 E-value=6.5e-06 Score=74.61 Aligned_cols=88 Identities=18% Similarity=0.154 Sum_probs=54.4
Q ss_pred HhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~iS 280 (457)
..+..+|++|+|+|+.++.+- ....+.+.+.. ...+.|+++|.||+||.+........+.+.. ......+.+|
T Consensus 63 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~S 142 (159)
T cd04150 63 HYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATC 142 (159)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEee
Confidence 457899999999999765321 11112222221 1135899999999999643222222222211 1234567889
Q ss_pred ccCCCChHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLR 295 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~ 295 (457)
|++|.|++++++.|.
T Consensus 143 ak~g~gv~~~~~~l~ 157 (159)
T cd04150 143 ATSGDGLYEGLDWLS 157 (159)
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999988874
No 279
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=98.16 E-value=1.1e-05 Score=72.14 Aligned_cols=93 Identities=16% Similarity=0.082 Sum_probs=62.1
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEe
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~i 279 (457)
.....+..+|++++|+|+.++.+. ..+..++.. . .++.|+++|+||+|+.+... ...-...+.+.+....+.+
T Consensus 65 ~~~~~~~~~d~~ilv~d~~~~~s~--~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~ 142 (164)
T smart00175 65 ITSSYYRGAVGALLVYDITNRESF--ENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFET 142 (164)
T ss_pred HHHHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEE
Confidence 344567889999999999876542 233333332 1 14689999999999976321 1111222233334457889
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
|+.++.|++++++.|.+.+.
T Consensus 143 Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 143 SAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred eCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999877653
No 280
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=98.16 E-value=5.4e-06 Score=75.96 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=55.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCCh---hhHHHHHHHHH-hcCCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPA---WATKGWLRVLS-KEYPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~---~~~~~wl~~l~-~~~p~~~f~ 278 (457)
..+..+|++|+|+|+.++.+- ..+.+++... ..+.|+++|.||+|+... +.+..++..-. ...+...|.
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 149 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 149 (168)
T ss_pred HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEE
Confidence 356789999999999876421 2223333221 246899999999999642 22222221101 112345778
Q ss_pred eeccCCCChHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLR 295 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~ 295 (457)
+||++|.|+.++++.|.
T Consensus 150 ~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 150 SCATSGDGLYEGLTWLS 166 (168)
T ss_pred eeCCCCCChHHHHHHHh
Confidence 99999999999988774
No 281
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=98.16 E-value=6.9e-06 Score=75.72 Aligned_cols=90 Identities=18% Similarity=0.127 Sum_probs=56.6
Q ss_pred hhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEEeec
Q 012726 209 VIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHASI 281 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~iSa 281 (457)
.+..+|++|+|+|+.++.+- ....+.+.+.. ..++.|+++|+||+||..........+.+.- ..+...+.+||
T Consensus 77 ~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa 156 (175)
T smart00177 77 YYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCA 156 (175)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeC
Confidence 47899999999999876421 11122222222 1246899999999999643222222222211 12344667899
Q ss_pred cCCCChHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~ 298 (457)
++|.|+.++++.|.+.+
T Consensus 157 ~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 157 TSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999987653
No 282
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=98.15 E-value=1.6e-05 Score=74.82 Aligned_cols=143 Identities=11% Similarity=0.028 Sum_probs=74.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
.++|+++|.+|||||||++.+.+..... ..+..|.......+.++. .+.|+||||-..... -..++.++..
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv 85 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV 85 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence 5789999999999999999999865421 223333222112222222 578999999643211 1345656653
Q ss_pred ccccC--CcccHHHHHHHHHHhc-CcceehhhcCCCCCCC---HHHHHHHHHHHcCCc-----ccCCcccHHHHHHHHHH
Q 012726 377 VVRVT--NLEDAAEHIGEVLKRV-KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGKL-----LRVCLFLHFISWYLFFY 445 (457)
Q Consensus 377 vv~~~--~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~~---~~efL~~la~r~g~l-----~kgg~pD~~~aa~~~l~ 445 (457)
++..+ .+.+...++..+.... ..+.+.+.+++|-... ..+....+++..+.- .+-|. ++...-..++.
T Consensus 86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~-gi~~lf~~l~~ 164 (199)
T cd04110 86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENI-NVEEMFNCITE 164 (199)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCc-CHHHHHHHHHH
Confidence 33221 1222222222222222 2356778888884321 234455566665531 11222 45555555555
Q ss_pred HHHh
Q 012726 446 DHIT 449 (457)
Q Consensus 446 d~~~ 449 (457)
.+..
T Consensus 165 ~~~~ 168 (199)
T cd04110 165 LVLR 168 (199)
T ss_pred HHHH
Confidence 5543
No 283
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=98.15 E-value=8.9e-06 Score=71.40 Aligned_cols=89 Identities=21% Similarity=0.196 Sum_probs=59.3
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hhc-CCCcEEEEeecCCCC-ChhhHHHHHHHHHhcCCeeEEEe
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-KHKHMILLLNKCDLV-PAWATKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~-~~K~vIlVLNKiDLv-p~~~~~~wl~~l~~~~p~~~f~i 279 (457)
.....+.++|++++|+|+.++.+ ...+..++. ... .+.|+++|+||+|+. +......-...+........+.+
T Consensus 65 ~~~~~~~~~d~ii~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (159)
T cd00154 65 ITPSYYRGAHGAILVYDITNRES--FENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFET 142 (159)
T ss_pred HHHHHhcCCCEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEE
Confidence 34456788999999999977432 122333332 221 468999999999997 43322223333333455667888
Q ss_pred eccCCCChHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLR 295 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~ 295 (457)
|+.++.|++++++.|.
T Consensus 143 sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 143 SAKTGENVEELFQSLA 158 (159)
T ss_pred ecCCCCCHHHHHHHHh
Confidence 9999999999988774
No 284
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=98.14 E-value=7e-06 Score=75.07 Aligned_cols=88 Identities=20% Similarity=0.141 Sum_probs=57.1
Q ss_pred HhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~iS 280 (457)
..+..+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+..........+.+.. ......|.+|
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 156 (173)
T cd04154 77 NYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCS 156 (173)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEecc
Confidence 3578999999999998763211 1122333321 1257899999999999754322333333321 1234678889
Q ss_pred ccCCCChHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLR 295 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~ 295 (457)
|++|.|++++++.|.
T Consensus 157 a~~g~gi~~l~~~l~ 171 (173)
T cd04154 157 AVTGEGLLQGIDWLV 171 (173)
T ss_pred CCCCcCHHHHHHHHh
Confidence 999999999988764
No 285
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.14 E-value=9.8e-06 Score=75.69 Aligned_cols=94 Identities=14% Similarity=0.110 Sum_probs=62.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc-CCCcEEEEeecCCCCCh-hhHHHHHHHHHhcCCeeEEEeeccC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~-~~K~vIlVLNKiDLvp~-~~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
...+..+|++|+|+|+.++.+-.. ..+...+.... .+.|+++|+||+||... .......+.+...+....+.+||.+
T Consensus 68 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~ 147 (191)
T cd04112 68 HAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKT 147 (191)
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 445778999999999976532110 11222333322 36799999999999642 2222334444444445678889999
Q ss_pred CCChHHHHHHHHHHHHh
Q 012726 284 SFGKGSLLSVLRQFARL 300 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~~ 300 (457)
+.|+++|++.|.+.+..
T Consensus 148 ~~~v~~l~~~l~~~~~~ 164 (191)
T cd04112 148 GLNVELAFTAVAKELKH 164 (191)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999887754
No 286
>PTZ00416 elongation factor 2; Provisional
Probab=98.14 E-value=4.6e-06 Score=95.08 Aligned_cols=122 Identities=17% Similarity=0.075 Sum_probs=83.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE---------------E--EEEEc-----------CCcEEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV---------------W--QYITL-----------TKRIFLI 356 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~---------------~--~~~~~-----------~~~i~li 356 (457)
.-.+|+++|+.++|||||+++|+....+......|.|+. . ..... +..+.|+
T Consensus 18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li 97 (836)
T PTZ00416 18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI 97 (836)
T ss_pred CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence 345899999999999999999987543332333343331 0 01111 2358999
Q ss_pred ecCCcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC------------CCHHHHHH
Q 012726 357 DCPGVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW------------VDENDFLL 419 (457)
Q Consensus 357 DtPGi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~------------~~~~efL~ 419 (457)
||||....... ..+|.++..+...+.+......+...+...+.+.+...|++|.. .+...+++
T Consensus 98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~ 177 (836)
T PTZ00416 98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIE 177 (836)
T ss_pred cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHHHH
Confidence 99998754222 45788888777777787777777777777778889999999964 34556677
Q ss_pred HHHHHcC
Q 012726 420 QLCKSTG 426 (457)
Q Consensus 420 ~la~r~g 426 (457)
.+-...+
T Consensus 178 ~in~~l~ 184 (836)
T PTZ00416 178 NVNVIIA 184 (836)
T ss_pred HHHHHHH
Confidence 7765444
No 287
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.14 E-value=2.1e-05 Score=69.80 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=74.2
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
+..+.|++|+....... ........++......-+.++.+++|+|+..+.......+.+++... +.|+++|+||+|+
T Consensus 46 ~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~--~~~vi~v~nK~D~ 122 (170)
T cd01876 46 KFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL--GIPFLVVLTKADK 122 (170)
T ss_pred eEEEecCCCccccccCH-HHHHHHHHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc--CCCEEEEEEchhc
Confidence 44567888864321100 00000122333344455678899999999877655555666777653 6899999999999
Q ss_pred CChhhHHHHHHHH----H-hcCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVL----S-KEYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 256 vp~~~~~~wl~~l----~-~~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
............+ . ......++++|++.+.|+.++++.|.++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHh
Confidence 8654333232222 2 1223456788999999999999998764
No 288
>PRK00049 elongation factor Tu; Reviewed
Probab=98.13 E-value=1.2e-05 Score=84.28 Aligned_cols=110 Identities=18% Similarity=0.163 Sum_probs=73.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEE-EEeec
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNK 252 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vI-lVLNK 252 (457)
..+..++|+||.+ .+..++...+..+|++++|+|+..+.......+..++.. .+.|.+ +++||
T Consensus 74 ~~~i~~iDtPG~~--------------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~--~g~p~iiVvvNK 137 (396)
T PRK00049 74 KRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLNK 137 (396)
T ss_pred CeEEEEEECCCHH--------------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHH--cCCCEEEEEEee
Confidence 4456688999974 355666677899999999999988776555555666654 367876 58999
Q ss_pred CCCCChhhHH-HHH----HHHHhc-CC---eeEEEeeccCCC----------ChHHHHHHHHHHHH
Q 012726 253 CDLVPAWATK-GWL----RVLSKE-YP---SLAFHASINKSF----------GKGSLLSVLRQFAR 299 (457)
Q Consensus 253 iDLvp~~~~~-~wl----~~l~~~-~p---~~~f~iSa~~~~----------Gi~~Li~~L~~~~~ 299 (457)
+|+++..... .+. +.+... ++ ..++++||.++. |+..|++.|.++.+
T Consensus 138 ~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 138 CDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 9998643221 122 223221 21 346778998764 45688888887654
No 289
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.13 E-value=1.2e-05 Score=75.02 Aligned_cols=117 Identities=11% Similarity=0.054 Sum_probs=62.6
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEec
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
+|+++|.+|||||||+|.|+...... ..+.++.+ ...+.++. .+.|+||||....... ..+|.++..+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~--~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVE--TYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 48999999999999999998654321 12222211 11222322 3788999996432211 3456666533
Q ss_pred cccCCc---ccHHHHHHHHHHh-----cCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 378 VRVTNL---EDAAEHIGEVLKR-----VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~~~l---~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
++.+. .....++..+... ...+.+.+.+++|-.. -..+....++...|.
T Consensus 79 -d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~ 138 (190)
T cd04144 79 -SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGC 138 (190)
T ss_pred -ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCC
Confidence 33222 2222333333222 1346788889988421 112234556666663
No 290
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.13 E-value=7.4e-06 Score=89.90 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=65.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-ceeEEE--EEEc-------------------CCcEEEEecCCccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-ETKVWQ--YITL-------------------TKRIFLIDCPGVVY 363 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-~T~~~~--~~~~-------------------~~~i~liDtPGi~~ 363 (457)
+..|+++|++|+|||||+|+|++..+. +..|| .|+..- +... -..+.|+||||...
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~--~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVA--AKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccc--cCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 456999999999999999999876542 22232 332211 0000 01378999999754
Q ss_pred CCC-----CCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 364 QNK-----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 364 ~~~-----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
... ...+|+++..+...+.+.........++...+.+.+...|++|.
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~ 135 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDR 135 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCC
Confidence 321 13478887766555545444444445666677889999999984
No 291
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=98.13 E-value=1.1e-05 Score=74.99 Aligned_cols=91 Identities=20% Similarity=0.118 Sum_probs=56.3
Q ss_pred hhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHH--hc---CCeeEEEee
Q 012726 209 VIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS--KE---YPSLAFHAS 280 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~--~~---~p~~~f~iS 280 (457)
.+..+|++|+|+|+.++.... ...+.+.... ...++|+++|+||+|+........+...+. .. .+..++.+|
T Consensus 72 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPAC 151 (183)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEee
Confidence 467899999999998763211 0111122211 124689999999999864321222222221 11 124467899
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~ 299 (457)
|+++.|+++|++.|.+.+.
T Consensus 152 A~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 152 AIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred cccCCCHHHHHHHHHHHHH
Confidence 9999999999998876653
No 292
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.13 E-value=9.7e-06 Score=89.17 Aligned_cols=121 Identities=19% Similarity=0.081 Sum_probs=75.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCc--------eec------CCCCceeEEEEEEc-----C---CcEEEEecCCcccC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVC--------KVA------PIPGETKVWQYITL-----T---KRIFLIDCPGVVYQ 364 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~--------~vs------~~pg~T~~~~~~~~-----~---~~i~liDtPGi~~~ 364 (457)
.+++++|.+++|||||+++|+..... .+. ...|.|.....+.+ + -.+.|+||||....
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 36899999999999999999863211 111 12366655432222 2 25789999999754
Q ss_pred CCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 365 NKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 365 ~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
... ..+|.++..++..+............+...+.+.+...||+|-. .+.++..+.++...|+
T Consensus 84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~ 152 (595)
T TIGR01393 84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGL 152 (595)
T ss_pred HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCC
Confidence 321 45777777666555443322222222334566788999999953 3456667777777664
No 293
>PRK10218 GTP-binding protein; Provisional
Probab=98.12 E-value=1.5e-05 Score=87.79 Aligned_cols=118 Identities=14% Similarity=0.097 Sum_probs=76.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce---------------ecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK---------------VAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD- 367 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~---------------vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~- 367 (457)
.+|+++|..++|||||+++|+...... .....|.|.......+ +..+.|+||||.......
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~v 85 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEV 85 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHHH
Confidence 479999999999999999998632110 1123466654433332 347899999997654322
Q ss_pred ----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHH
Q 012726 368 ----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKS 424 (457)
Q Consensus 368 ----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r 424 (457)
..+|.++..++..+........+...+...+.+.+...|++|.. .+.++.++.+...
T Consensus 86 ~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l 147 (607)
T PRK10218 86 ERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDL 147 (607)
T ss_pred HHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHH
Confidence 45788887666666554445555666667788889999999953 3444444444433
No 294
>PLN03110 Rab GTPase; Provisional
Probab=98.12 E-value=1.5e-05 Score=76.41 Aligned_cols=121 Identities=12% Similarity=0.109 Sum_probs=68.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
.++|+++|.+||||||||+.|.+..... ..+..|.+.....+.++. .+.|+||||-..... -..++.++..
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv 91 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLV 91 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEE
Confidence 4789999999999999999998865432 223333332223344433 678999999643221 1345655553
Q ss_pred ccccCC---cccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 377 VVRVTN---LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~---l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+ +... +.....++..+.... ..+.+.+.+++|-.. -.++....++...+.
T Consensus 92 ~-d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~ 149 (216)
T PLN03110 92 Y-DITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGL 149 (216)
T ss_pred E-ECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCC
Confidence 3 3322 222222222222222 356788889988422 234566777776554
No 295
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.12 E-value=2e-05 Score=74.12 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=68.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC--C--cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT--K--RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~--~--~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
++|+++|.+|||||||+|.+++..... ..+..|.......+.++ . .+.|+||||-...... ..++.++..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 479999999999999999999764321 12222221112233333 2 4789999996432211 355666653
Q ss_pred cccc--CCcccHHHHHHHHHHh------cCcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 377 VVRV--TNLEDAAEHIGEVLKR------VKKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~--~~l~~~~~~i~~~L~~------~~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
++-. +.+.....+...+... -..+.+.+.++.|-. .-..+-+..+++..|+
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~ 142 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGF 142 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC
Confidence 3321 1122222222322222 234678899999843 2234456788888774
No 296
>PLN03127 Elongation factor Tu; Provisional
Probab=98.12 E-value=1e-05 Score=86.05 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=70.9
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEee
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLN 251 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLN 251 (457)
++.+..++|+||+++ ++..+...+..+|++++|+|+..+......++...+... +.| +|+|+|
T Consensus 122 ~~~~i~~iDtPGh~~--------------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~--gip~iIvviN 185 (447)
T PLN03127 122 AKRHYAHVDCPGHAD--------------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV--GVPSLVVFLN 185 (447)
T ss_pred CCeEEEEEECCCccc--------------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEEE
Confidence 345667899999752 344555566789999999999887766666666666543 677 578999
Q ss_pred cCCCCChhhHHHHH-----HHHHh-cCC---eeEEEeecc---CCCC-------hHHHHHHHHHHHH
Q 012726 252 KCDLVPAWATKGWL-----RVLSK-EYP---SLAFHASIN---KSFG-------KGSLLSVLRQFAR 299 (457)
Q Consensus 252 KiDLvp~~~~~~wl-----~~l~~-~~p---~~~f~iSa~---~~~G-------i~~Li~~L~~~~~ 299 (457)
|+|+++.......+ +.+.. .++ ..++++|+. ++.| +..|++.|.++++
T Consensus 186 KiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 186 KVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred eeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 99999643322222 22221 121 334555654 4544 5678888887765
No 297
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.11 E-value=5.8e-06 Score=79.37 Aligned_cols=104 Identities=18% Similarity=0.135 Sum_probs=64.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc-----------------e-------e------cCCCCceeEEEEEEc---CCcEE
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC-----------------K-------V------APIPGETKVWQYITL---TKRIF 354 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~-----------------~-------v------s~~pg~T~~~~~~~~---~~~i~ 354 (457)
+|+++|.+++|||||+.+|+..... . + ....|+|++.....+ +..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 4899999999999999999632100 0 1 113577776544433 45799
Q ss_pred EEecCCcccCCC-----CCccceEEEeccccCC-------cccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 355 LIDCPGVVYQNK-----DSETDIVLKGVVRVTN-------LEDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 355 liDtPGi~~~~~-----~~e~dlvL~gvv~~~~-------l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
++||||...... ...+|.++..++..+. ..........++...+ ++.+...||+|-.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~ 150 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV 150 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence 999999743211 1357888876665442 2111222223444555 5778899999964
No 298
>PLN00223 ADP-ribosylation factor; Provisional
Probab=98.11 E-value=1.6e-05 Score=74.05 Aligned_cols=105 Identities=16% Similarity=0.151 Sum_probs=63.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
...++|.++|.+|||||||++.+.........|..|.+. ..+.. +-.+.|+||||-.... .-..++.++.++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~--~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~ 92 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNV--ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 92 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeE--EEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEE
Confidence 346899999999999999999998654434334444322 22222 3468999999953211 114567777744
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
+..+ .+.+....+..++.. -..+.+...|++|-
T Consensus 93 D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl 130 (181)
T PLN00223 93 DSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 130 (181)
T ss_pred eCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCC
Confidence 4332 222222333444432 13578888999983
No 299
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.10 E-value=1.6e-05 Score=71.77 Aligned_cols=103 Identities=12% Similarity=0.077 Sum_probs=57.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC---CcEEEEecCCcccCCCC-----CccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT---KRIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
-.+|+++|.+|||||||++.|.+.... ....|..+.+.. .+.+. -.+.++||||....... ..++.++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 85 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL 85 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCC-CCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 478999999999999999999865432 122222222221 22232 24678999996432211 35666666
Q ss_pred eccccCCcccHHHHHHHH---HHhc---CcceehhhcCCCCC
Q 012726 376 GVVRVTNLEDAAEHIGEV---LKRV---KKEHLKRAYKIKDW 411 (457)
Q Consensus 376 gvv~~~~l~~~~~~i~~~---L~~~---~~~~l~~~y~i~~~ 411 (457)
.++ ..... ....+..+ ++.. ..+.+...+++|..
T Consensus 86 v~d-~~~~~-s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~ 125 (169)
T cd04114 86 TYD-ITCEE-SFRCLPEWLREIEQYANNKVITILVGNKIDLA 125 (169)
T ss_pred EEE-CcCHH-HHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence 443 32221 11122222 2322 34568888999853
No 300
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=98.10 E-value=1.4e-05 Score=72.21 Aligned_cols=117 Identities=13% Similarity=0.135 Sum_probs=64.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCcee--EEEEEEcCC---cEEEEecCCcccC-CCC-----CccceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK--VWQYITLTK---RIFLIDCPGVVYQ-NKD-----SETDIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~--~~~~~~~~~---~i~liDtPGi~~~-~~~-----~e~dlvL~g 376 (457)
+|+++|.+||||||||++++.... +...+.++. ....+.++. .+.++||||.... ... ..+|.++..
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRF--IGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcc--ccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 489999999999999999986443 222233321 111222222 4789999998732 111 246776663
Q ss_pred ccccCCcccH--HHHHHHHHHh-----cCcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 377 VVRVTNLEDA--AEHIGEVLKR-----VKKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l~~~--~~~i~~~L~~-----~~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
+ +..+.... .......+.. ...+.+.+.+++|-..+ ..+-...+|+..|.
T Consensus 79 ~-d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 138 (165)
T cd04146 79 Y-SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGC 138 (165)
T ss_pred E-ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCC
Confidence 3 33222111 1112222332 24567888899884221 23445667777663
No 301
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.08 E-value=1.7e-05 Score=71.68 Aligned_cols=90 Identities=13% Similarity=0.113 Sum_probs=58.8
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCC-eeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYP-SLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p-~~~f~iSa~ 282 (457)
...+..+|++++|+|+.++.+... ..+...+... ..+.|+|+|.||+|+.... ........+.+.+. ...+.+||+
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECC
Confidence 445678999999999987643211 2223333322 2467899999999997442 12222333333433 456889999
Q ss_pred CCCChHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQ 296 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~ 296 (457)
++.|++++++.|.+
T Consensus 150 ~~~~v~~~~~~l~~ 163 (165)
T cd01864 150 ESQNVEEAFLLMAT 163 (165)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999999988865
No 302
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=98.08 E-value=1.2e-05 Score=71.81 Aligned_cols=88 Identities=20% Similarity=0.177 Sum_probs=56.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~iS 280 (457)
..+..+|++++|+|+.++.... ...+...+.. ...+.|+++|+||+|+..........+.+... .....+.+|
T Consensus 62 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 141 (158)
T cd00878 62 HYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCS 141 (158)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEee
Confidence 4567889999999998763211 1112222221 12478999999999998644222222333221 235678889
Q ss_pred ccCCCChHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLR 295 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~ 295 (457)
|+++.|++++++.|.
T Consensus 142 a~~~~gv~~~~~~l~ 156 (158)
T cd00878 142 AVTGDGLDEGLDWLL 156 (158)
T ss_pred CCCCCCHHHHHHHHh
Confidence 999999999988875
No 303
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.08 E-value=2e-05 Score=84.41 Aligned_cols=101 Identities=14% Similarity=-0.007 Sum_probs=65.0
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
+.+..++|+||.. .+.+++...+..+|++|+|+||..............+... .-+++|+|+||+
T Consensus 106 ~~~i~~iDTPGh~--------------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~~~iIvvvNKi 170 (474)
T PRK05124 106 KRKFIIADTPGHE--------------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GIKHLVVAVNKM 170 (474)
T ss_pred CcEEEEEECCCcH--------------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CCCceEEEEEee
Confidence 4466789999953 2344555567999999999999887655444333333332 236789999999
Q ss_pred CCCCh--hhHHHHHHHHH----hc--C-CeeEEEeeccCCCChHH
Q 012726 254 DLVPA--WATKGWLRVLS----KE--Y-PSLAFHASINKSFGKGS 289 (457)
Q Consensus 254 DLvp~--~~~~~wl~~l~----~~--~-p~~~f~iSa~~~~Gi~~ 289 (457)
|++.. .......+.+. .. . ...++++||.++.|+..
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCccc
Confidence 99842 22222222222 11 1 25678899999999864
No 304
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=98.07 E-value=2.8e-05 Score=70.84 Aligned_cols=121 Identities=12% Similarity=0.063 Sum_probs=65.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCC------CCCccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN------KDSETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~------~~~e~dlvL~ 375 (457)
.++|+++|.+||||||||+++++..... ..+..|.......+.++ -.+.++||||..... .-..+|.++.
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 3689999999999999999998754321 12222211111122232 257899999964321 1134566665
Q ss_pred ecccc--CCcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 376 GVVRV--TNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 376 gvv~~--~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
.++.. +.+.+....+..+.... ..+.+...+++|-.. -..+....+|...+
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHS 140 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcC
Confidence 33332 12222222232332222 357888899988422 22445566666554
No 305
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=98.06 E-value=1.9e-05 Score=71.50 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hc-CCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HC-KHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~-~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|++++|+|+.++.+ ...+.+++.. .. ...|+++|.||+||.+.... ..-...+........|.+||
T Consensus 68 ~~~~~~~~~~l~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 145 (165)
T cd01865 68 TAYYRGAMGFILMYDITNEES--FNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASA 145 (165)
T ss_pred HHHccCCcEEEEEEECCCHHH--HHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEEC
Confidence 345689999999999976532 1233444433 22 36789999999999754321 11122233334445788999
Q ss_pred cCCCChHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~ 298 (457)
+++.|+.+|++.|.+.+
T Consensus 146 ~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 146 KENINVKQVFERLVDII 162 (165)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999987654
No 306
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=98.06 E-value=2e-05 Score=73.46 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=59.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCCCCCh----h--hHHHHHHHHHhcCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPA----W--ATKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiDLvp~----~--~~~~wl~~l~~~~p~~~f~iS 280 (457)
..+.++|+|++|+|+.++.+... ..+...+....+....|+|.||+||... . ......+.+.+......|.+|
T Consensus 68 ~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~S 147 (182)
T cd04128 68 LVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCS 147 (182)
T ss_pred HHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEe
Confidence 36789999999999987754322 1122223222233344889999999621 1 122334444445556678899
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~ 299 (457)
|+++.|+++|++.|.+.+.
T Consensus 148 Ak~g~~v~~lf~~l~~~l~ 166 (182)
T cd04128 148 TSHSINVQKIFKIVLAKAF 166 (182)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999998876554
No 307
>PRK12736 elongation factor Tu; Reviewed
Probab=98.06 E-value=2.3e-05 Score=82.13 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=72.7
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKC 253 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKi 253 (457)
.+..++|+||.+ .+...+...+..+|++++|+|+.............++... +.| +|+++||+
T Consensus 75 ~~i~~iDtPGh~--------------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~--g~~~~IvviNK~ 138 (394)
T PRK12736 75 RHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV--GVPYLVVFLNKV 138 (394)
T ss_pred cEEEEEECCCHH--------------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc--CCCEEEEEEEec
Confidence 344578899854 3345556677899999999999887665555555555543 667 67899999
Q ss_pred CCCChhhHH-----HHHHHHHhc-C---CeeEEEeeccCCC--------ChHHHHHHHHHHHH
Q 012726 254 DLVPAWATK-----GWLRVLSKE-Y---PSLAFHASINKSF--------GKGSLLSVLRQFAR 299 (457)
Q Consensus 254 DLvp~~~~~-----~wl~~l~~~-~---p~~~f~iSa~~~~--------Gi~~Li~~L~~~~~ 299 (457)
|+++.+... ...+++... + ...++++||.++. ++..|++.|.++++
T Consensus 139 D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 139 DLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 998543222 222223222 1 1457888999873 57788888888765
No 308
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.05 E-value=7.9e-06 Score=92.22 Aligned_cols=157 Identities=17% Similarity=0.143 Sum_probs=96.5
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccc-hHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQ-SKR 201 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~-~kr 201 (457)
..+|..+|..|+.+-|.+. +-.+++..+.|. ....| .++.....++|+||..+.... ..... .++
T Consensus 10 G~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~-------k~g~~---~~~~~~i~lvDtPG~ysl~~~--~~~~s~~E~ 75 (772)
T PRK09554 10 GNPNSGKTTLFNQLTGARQ--RVGNWAGVTVER-------KEGQF---STTDHQVTLVDLPGTYSLTTI--SSQTSLDEQ 75 (772)
T ss_pred CCCCCCHHHHHHHHhCCCC--ccCCCCCceEee-------EEEEE---EcCceEEEEEECCCccccccc--cccccHHHH
Confidence 4678889999999988642 222333333321 00011 122334457899998654321 01111 122
Q ss_pred HHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeec
Q 012726 202 IWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 202 ~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa 281 (457)
+.+. +-....+|+|+.|+|+.+. .++..+...+.+ .++|+++|+||+|+..+.....-.+.+.+.....++++|+
T Consensus 76 i~~~-~l~~~~aD~vI~VvDat~l--er~l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA 150 (772)
T PRK09554 76 IACH-YILSGDADLLINVVDASNL--ERNLYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVS 150 (772)
T ss_pred HHHH-HHhccCCCEEEEEecCCcc--hhhHHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEe
Confidence 2222 3334689999999999763 334444445544 3799999999999975443333445566655566778899
Q ss_pred cCCCChHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~ 298 (457)
.++.|+++|.+.+.+..
T Consensus 151 ~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 151 TRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ecCCCHHHHHHHHHHhh
Confidence 99999999999998765
No 309
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.05 E-value=1.3e-05 Score=88.32 Aligned_cols=110 Identities=16% Similarity=0.078 Sum_probs=72.5
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+. ..++..++..+|.+|+|+|+.++...........+. ..+.|+|+|+||+|
T Consensus 74 ~~lnLiDTPGh~dF--------------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~--~~~lpiIvViNKiD 137 (600)
T PRK05433 74 YILNLIDTPGHVDF--------------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL--ENDLEIIPVLNKID 137 (600)
T ss_pred EEEEEEECCCcHHH--------------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--HCCCCEEEEEECCC
Confidence 44557889887643 233455678899999999998876433222222222 24789999999999
Q ss_pred CCChhhHHHHHHHHHhcC---CeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 255 LVPAWATKGWLRVLSKEY---PSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~---p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+..... ....+.+...+ +..++++||.++.|+.+|++.|.+.+|..
T Consensus 138 l~~a~~-~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 138 LPAADP-ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCcccH-HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 964321 11222222221 23478899999999999999998887754
No 310
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=98.05 E-value=4.5e-06 Score=87.73 Aligned_cols=105 Identities=15% Similarity=0.096 Sum_probs=66.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCcee--------------c------------C------CCCceeEEEEEEc---CC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKV--------------A------------P------IPGETKVWQYITL---TK 351 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~v--------------s------------~------~pg~T~~~~~~~~---~~ 351 (457)
++|+++|++++|||||+++|+....... + + .-|.|.+.....+ +.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 3689999999999999999974321100 0 0 1245555443333 34
Q ss_pred cEEEEecCCcccCC-----CCCccceEEEeccccCCcccHHHHHHHHHHhcCc-ceehhhcCCCCC
Q 012726 352 RIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK-EHLKRAYKIKDW 411 (457)
Q Consensus 352 ~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~-~~l~~~y~i~~~ 411 (457)
++.|+||||..... ....+|.++..+...+.+.........++..++. +.+...||+|..
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~ 146 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV 146 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence 78999999954221 1246788888777766665444444455666554 467799999954
No 311
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=98.05 E-value=2.3e-05 Score=70.75 Aligned_cols=91 Identities=16% Similarity=0.085 Sum_probs=61.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCC-CHHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~-~~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
...+..+|++++|+|+.++.+.. ...+...+... ..+.|.++|.||+|+.+.. ......+.+.+......+.+|+++
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 153 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKE 153 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCC
Confidence 45778999999999997653221 11222223322 2357889999999997443 233444555555556678899999
Q ss_pred CCChHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQF 297 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~ 297 (457)
+.|+.++++.|.+.
T Consensus 154 ~~gv~~l~~~i~~~ 167 (169)
T cd04114 154 SDNVEKLFLDLACR 167 (169)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999888654
No 312
>PRK12735 elongation factor Tu; Reviewed
Probab=98.04 E-value=3.3e-05 Score=80.91 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=71.3
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEE-EEee
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLN 251 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vI-lVLN 251 (457)
+..+..++|+||.+ .+...+...+..+|++++|+|+..............+.. .+.|.| +|+|
T Consensus 73 ~~~~i~~iDtPGh~--------------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~--~gi~~iivvvN 136 (396)
T PRK12735 73 ANRHYAHVDCPGHA--------------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFLN 136 (396)
T ss_pred CCcEEEEEECCCHH--------------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEEE
Confidence 34456688999974 345666778889999999999987554433333344433 367766 5799
Q ss_pred cCCCCChhhHHH-----HHHHHHhc-CC---eeEEEeeccCCC----------ChHHHHHHHHHHHH
Q 012726 252 KCDLVPAWATKG-----WLRVLSKE-YP---SLAFHASINKSF----------GKGSLLSVLRQFAR 299 (457)
Q Consensus 252 KiDLvp~~~~~~-----wl~~l~~~-~p---~~~f~iSa~~~~----------Gi~~Li~~L~~~~~ 299 (457)
|+|+++...... ...++... ++ ..++++||.+++ ++..|++.|.+..+
T Consensus 137 K~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 137 KCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred ecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 999985432221 11222221 11 456788998874 56788888887654
No 313
>PTZ00369 Ras-like protein; Provisional
Probab=98.04 E-value=3.5e-05 Score=71.83 Aligned_cols=145 Identities=14% Similarity=0.026 Sum_probs=76.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||++.+.+.... ...+..|.+.. ..+.++. .+.++||||.-....- ..++.++.
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYR-KQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEE-EEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 3578999999999999999999975542 22232232221 1122222 4678999996543211 34566655
Q ss_pred ecccc--CCcccHHHHHHHHHHhc---CcceehhhcCCCCCCC---HHHHHHHHHHHcCCc-------ccCCccc-HHHH
Q 012726 376 GVVRV--TNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGKL-------LRVCLFL-HFIS 439 (457)
Q Consensus 376 gvv~~--~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~~---~~efL~~la~r~g~l-------~kgg~pD-~~~a 439 (457)
.++.. +.+.+...++..+++.. +.+.+...++.|-... ..+....+++..+.- ...|..+ ....
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l 162 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL 162 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 33322 22233334444444432 3467778888874221 123344555555531 1122222 2335
Q ss_pred HHHHHHHHHhc
Q 012726 440 WYLFFYDHITN 450 (457)
Q Consensus 440 a~~~l~d~~~g 450 (457)
++.+++++..+
T Consensus 163 ~~~l~~~~~~~ 173 (189)
T PTZ00369 163 VREIRKYLKED 173 (189)
T ss_pred HHHHHHHhhcc
Confidence 56666665544
No 314
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.03 E-value=1.7e-05 Score=90.62 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=73.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCcee---------------EE--EEEEc-----------------C
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK---------------VW--QYITL-----------------T 350 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~---------------~~--~~~~~-----------------~ 350 (457)
.-.+|+++|+.++|||||+++|+...........|.|+ .. ..+.. +
T Consensus 18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 34589999999999999999998543222222222222 11 00111 2
Q ss_pred CcEEEEecCCcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 351 KRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 351 ~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
..+.||||||....... ..+|.++..|+..+.+......+...+...+.+.+...|++|..
T Consensus 98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCccc
Confidence 35789999998654322 35678888788888887777777777778788899999999964
No 315
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=98.03 E-value=1.3e-05 Score=75.35 Aligned_cols=102 Identities=13% Similarity=0.073 Sum_probs=59.3
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC---CcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
+|+++|.+|||||||++++++..... ..+.++... ..+.+. -.+.|+||||...... -..+|.++..+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEP--KYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCc--cCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 48999999999999999999765422 122222111 122222 2578999999644221 14667777744
Q ss_pred cccCC--cccHHHHHHHHHHh---cCcceehhhcCCCCC
Q 012726 378 VRVTN--LEDAAEHIGEVLKR---VKKEHLKRAYKIKDW 411 (457)
Q Consensus 378 v~~~~--l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~ 411 (457)
+..+. ++........++.. .+.+.++..+++|..
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~ 117 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSL 117 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccc
Confidence 43321 22222222333332 246788899999853
No 316
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.03 E-value=1.9e-05 Score=86.80 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=75.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCC-----ceec----------CCCCceeEEEE---EEcCCcEEEEecCCcccCCCC--
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNV-----CKVA----------PIPGETKVWQY---ITLTKRIFLIDCPGVVYQNKD-- 367 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~-----~~vs----------~~pg~T~~~~~---~~~~~~i~liDtPGi~~~~~~-- 367 (457)
+|+++|+.++|||||+++|+.... ..+. ..-|.|..... ..-+.++.|+||||.......
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~ 82 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE 82 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence 689999999999999999985211 0111 12355544322 122457899999998653221
Q ss_pred ---CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHH
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCK 423 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~ 423 (457)
..+|.++..++..+........+...+...+.+.+...||+|.. .+.+++++.+..
T Consensus 83 ~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~~~v~~ei~~ 142 (594)
T TIGR01394 83 RVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFD 142 (594)
T ss_pred HHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCHHHHHHHHHH
Confidence 45688887676666554555556666677778889999999953 344455444433
No 317
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.03 E-value=2.7e-05 Score=74.79 Aligned_cols=97 Identities=21% Similarity=0.118 Sum_probs=59.1
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-----C--CCCHHHHHHHHHhcCCCcEEEE
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-----G--TRCHHLERHLKEHCKHKHMILL 249 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-----~--s~~~~l~k~L~~~~~~K~vIlV 249 (457)
..+.|++|..+ .+.++...+..+|++|+|+|+.++. + .........+.. ...+|+|+|
T Consensus 79 i~liDtpG~~~--------------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iiiv 143 (219)
T cd01883 79 FTILDAPGHRD--------------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LGVKQLIVA 143 (219)
T ss_pred EEEEECCChHH--------------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cCCCeEEEE
Confidence 44678888642 2345556788899999999998752 1 112222222222 223788999
Q ss_pred eecCCCCC----hhhHHHHHHH----HHhc-C---CeeEEEeeccCCCChH
Q 012726 250 LNKCDLVP----AWATKGWLRV----LSKE-Y---PSLAFHASINKSFGKG 288 (457)
Q Consensus 250 LNKiDLvp----~~~~~~wl~~----l~~~-~---p~~~f~iSa~~~~Gi~ 288 (457)
+||+|+.+ ........+. +... + ...++++||.+|.|+.
T Consensus 144 vNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 144 VNKMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred EEccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 99999983 2222222222 3222 1 2558899999999975
No 318
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=98.02 E-value=2.2e-05 Score=70.25 Aligned_cols=88 Identities=14% Similarity=0.130 Sum_probs=57.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHH---HH--hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~--~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa 281 (457)
..+..+|.+++|+|+.++.+. ..+..++ .. ...+.|+++|+||+|+.+... .......+.+......+.+||
T Consensus 69 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (164)
T cd04145 69 QYMRTGEGFLLVFSVTDRGSF--EEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSA 146 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeC
Confidence 456789999999999875431 2222222 21 124679999999999975431 122233333334456788999
Q ss_pred cCCCChHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQF 297 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~ 297 (457)
+++.|++++++.|...
T Consensus 147 ~~~~~i~~l~~~l~~~ 162 (164)
T cd04145 147 KDRLNVDKAFHDLVRV 162 (164)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999998887643
No 319
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=98.02 E-value=2.8e-05 Score=69.53 Aligned_cols=86 Identities=19% Similarity=0.151 Sum_probs=56.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hhc------CCCcEEEEeecCCCCChh--hHHHHHHHHHhcCCeeEE
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC------KHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYPSLAF 277 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~------~~K~vIlVLNKiDLvp~~--~~~~wl~~l~~~~p~~~f 277 (457)
.+..+|++|+|+|+.++.+. ..+..++. ... .+.|+++|.||+|+.++. ....... +........|
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~ 145 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSF--EALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAESKGFKYF 145 (168)
T ss_pred HhccCCEEEEEEECCCHHHH--HhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHHHcCCeEE
Confidence 46789999999999876431 22333332 211 357899999999997322 1122222 2233335578
Q ss_pred EeeccCCCChHHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~~ 297 (457)
.+||.++.|+.++++.|...
T Consensus 146 ~~Sa~~~~gi~~l~~~l~~~ 165 (168)
T cd04119 146 ETSACTGEGVNEMFQTLFSS 165 (168)
T ss_pred EEECCCCCCHHHHHHHHHHH
Confidence 88999999999999887654
No 320
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=98.02 E-value=2.5e-05 Score=74.57 Aligned_cols=121 Identities=17% Similarity=0.132 Sum_probs=67.5
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc--C--CcEEEEecCCcccCCC-----CCccceEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL--T--KRIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~--~--~~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
.++|+++|.+|||||||+|.|++....... .|.++.+.. .+.+ + -.+.++||||...... -..++.++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~-~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVS-DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCC-CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 478999999999999999999986653332 233222221 1222 1 2578999999643211 13456665
Q ss_pred Eecccc--CCcccHHHHHHHHHHhcC---cceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 375 KGVVRV--TNLEDAAEHIGEVLKRVK---KEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~--~~l~~~~~~i~~~L~~~~---~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
..++.. +.+.+....+..++.... .+.+...++.|-... ..+....+++..|.
T Consensus 81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~ 141 (211)
T cd04111 81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGM 141 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCC
Confidence 533322 122333334444444332 345667788874321 23445667777663
No 321
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=98.01 E-value=1e-05 Score=69.33 Aligned_cols=102 Identities=16% Similarity=0.001 Sum_probs=56.4
Q ss_pred EeecCCCchHHHHHHHhCCCCceecCCCC-ceeEEEEEEc---CCcEEEEecCCcccCCCC-----CccceEEEeccccC
Q 012726 311 FVGYPNVGKSSVINTLRTKNVCKVAPIPG-ETKVWQYITL---TKRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVT 381 (457)
Q Consensus 311 vvG~pNvGKSSliN~L~~~~~~~vs~~pg-~T~~~~~~~~---~~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~ 381 (457)
++|.+|+|||||+|+|.+.........+. .......... ...+.++||||....... ...+.++..+....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcC
Confidence 58999999999999999876521111111 1111111121 346899999997754321 34566666443332
Q ss_pred Ccc--cHHHH---HHHHHHhcCcceehhhcCCCCCC
Q 012726 382 NLE--DAAEH---IGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 382 ~l~--~~~~~---i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
... +.... ..........+.+...+++|...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~ 116 (157)
T cd00882 81 RESFENVKEWLLLILINKEGENIPIILVGNKIDLPE 116 (157)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCcEEEEEecccccc
Confidence 221 11111 11222334567888899988543
No 322
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=98.01 E-value=2.4e-05 Score=70.02 Aligned_cols=87 Identities=18% Similarity=0.276 Sum_probs=58.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---HhcCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeeccC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
..+..+|++++|.|+.++.+. ..+..++. ....+.|+|+|+||+|+...... ..-...+.+......|.+|+++
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~--~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 147 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESF--EAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKD 147 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 456899999999999776432 23333332 23457899999999999753221 1112223333444578899999
Q ss_pred CCChHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQ 296 (457)
Q Consensus 284 ~~Gi~~Li~~L~~ 296 (457)
+.|+++|++.|.+
T Consensus 148 ~~~v~~l~~~l~~ 160 (162)
T cd04106 148 DFNVTELFEYLAE 160 (162)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999888764
No 323
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.01 E-value=2.4e-05 Score=86.06 Aligned_cols=110 Identities=18% Similarity=0.117 Sum_probs=72.6
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
.+..+.|+||..+. ..+...++..+|.+|+|+|+.++.............. .+.|+|+|+||+|
T Consensus 70 ~~l~liDTPG~~dF--------------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--~~ipiIiViNKiD 133 (595)
T TIGR01393 70 YVLNLIDTPGHVDF--------------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--NDLEIIPVINKID 133 (595)
T ss_pred EEEEEEECCCcHHH--------------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--cCCCEEEEEECcC
Confidence 44567889988642 2344567889999999999988764433222222222 3789999999999
Q ss_pred CCChh---hHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 255 LVPAW---ATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 255 Lvp~~---~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+.... ....+.+.+. ..+..++.+||+++.|+.+|++.|.+.++..
T Consensus 134 l~~~~~~~~~~el~~~lg-~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 134 LPSADPERVKKEIEEVIG-LDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCccCHHHHHHHHHHHhC-CCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 96422 1122322221 1123467899999999999999998887653
No 324
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=98.01 E-value=2.5e-05 Score=70.50 Aligned_cols=90 Identities=14% Similarity=0.182 Sum_probs=59.5
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hc-CCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HC-KHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~-~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|++|+|+|+.++.+ ...+..++.. .. ++.|+++|.||+|+...... ..-...+.+......+.+||
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s--~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 146 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSA 146 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 345678999999999977542 1233334332 11 46899999999998643211 11122333334456788999
Q ss_pred cCCCChHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~ 298 (457)
+++.|++++++.|.+.+
T Consensus 147 ~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 147 KNATNVEQAFMTMAREI 163 (166)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 99999999998886544
No 325
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=98.00 E-value=2.3e-05 Score=70.14 Aligned_cols=88 Identities=17% Similarity=0.062 Sum_probs=58.8
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh--cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~--~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|.+|+|+|+.++.+- ..+..++. .. ..+.|+++|+||+|+........-...+........+.+|+
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd01863 67 SSYYRGAQGVILVYDVTRRDTF--TNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSA 144 (161)
T ss_pred HHHhCCCCEEEEEEECCCHHHH--HhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEec
Confidence 3456789999999999766432 22333332 21 24688999999999974332222233333344556788999
Q ss_pred cCCCChHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQ 296 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~ 296 (457)
+++.|+.++++.+.+
T Consensus 145 ~~~~gi~~~~~~~~~ 159 (161)
T cd01863 145 KTRDGVQQAFEELVE 159 (161)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888754
No 326
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=98.00 E-value=3.1e-05 Score=70.84 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=59.3
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEee
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iS 280 (457)
...+..+|++|+|.|+.++.+. ..+..++.. . .++.|+++|.||+||.+.. ....-...+.+.+....+.+|
T Consensus 81 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S 158 (180)
T cd04127 81 TAFFRDAMGFLLIFDLTNEQSF--LNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETS 158 (180)
T ss_pred HHHhCCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEe
Confidence 3466899999999999775432 223333332 1 2367899999999997532 111122333333444568889
Q ss_pred ccCCCChHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~ 298 (457)
|+++.|++++++.|.+..
T Consensus 159 ak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 159 AATGTNVEKAVERLLDLV 176 (180)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999887543
No 327
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=98.00 E-value=3.8e-05 Score=69.88 Aligned_cols=92 Identities=15% Similarity=0.106 Sum_probs=62.7
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh----cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEe
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~----~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~i 279 (457)
.....+..+|++|+|+|+.++.+. ..+..++... .++.|+|+|.||+|+.+.. ........+........|.+
T Consensus 69 ~~~~~~~~~d~il~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~ 146 (168)
T cd01866 69 ITRSYYRGAAGALLVYDITRRETF--NHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMET 146 (168)
T ss_pred HHHHHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEE
Confidence 345567899999999999865432 2344454321 2478999999999997432 22223333334445567889
Q ss_pred eccCCCChHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~ 298 (457)
|+.++.|+++++..+...+
T Consensus 147 Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 147 SAKTASNVEEAFINTAKEI 165 (168)
T ss_pred eCCCCCCHHHHHHHHHHHH
Confidence 9999999999988776554
No 328
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=98.00 E-value=3.3e-05 Score=70.27 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=55.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
.+|+++|.+|||||||++.+.+..... ..+..+... ...+.++. .+.++||||.-... .-..+|+++. +
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~-v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM-C 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEE-E
Confidence 468999999999999999999754321 112111111 11222322 57899999964321 1134566653 2
Q ss_pred cccCC---cccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 378 VRVTN---LEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~~---l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
..+.+ +.+........+.+. ..+.+.+.+++|-
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 117 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDL 117 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhc
Confidence 23222 222222222223332 4577888888884
No 329
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.99 E-value=2.6e-05 Score=82.36 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=62.2
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCC--CCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARD--PQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDard--p~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
.+..+.|++|.. .+++.+...+..+|++|+|+|+.+ .+.........++... ..+++|+|+||
T Consensus 84 ~~i~liDtpG~~--------------~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK 148 (425)
T PRK12317 84 YYFTIVDCPGHR--------------DFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINK 148 (425)
T ss_pred eEEEEEECCCcc--------------cchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEc
Confidence 445578888853 233445556789999999999998 4434344444444332 22468999999
Q ss_pred CCCCCh--hhH----HHHHHHHHhc-C---CeeEEEeeccCCCChHH
Q 012726 253 CDLVPA--WAT----KGWLRVLSKE-Y---PSLAFHASINKSFGKGS 289 (457)
Q Consensus 253 iDLvp~--~~~----~~wl~~l~~~-~---p~~~f~iSa~~~~Gi~~ 289 (457)
+|+++. ... ....+.+... + ...++++||.+|.|+.+
T Consensus 149 ~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 149 MDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred cccccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 999752 111 1122222221 1 24578899999999875
No 330
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.99 E-value=4.4e-05 Score=80.30 Aligned_cols=99 Identities=16% Similarity=0.063 Sum_probs=64.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
+..++|+||..+ +.+.+...+..+|++|+|+||..++..........+... ..+++|+|+||+|+
T Consensus 81 ~~~liDtPGh~~--------------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~~~iivviNK~D~ 145 (406)
T TIGR02034 81 KFIVADTPGHEQ--------------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GIRHVVLAVNKMDL 145 (406)
T ss_pred EEEEEeCCCHHH--------------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CCCcEEEEEEeccc
Confidence 455789999653 334455678899999999999988776665544444432 24568899999999
Q ss_pred CChh--hHHHHHH----HHHhc-C-CeeEEEeeccCCCChHH
Q 012726 256 VPAW--ATKGWLR----VLSKE-Y-PSLAFHASINKSFGKGS 289 (457)
Q Consensus 256 vp~~--~~~~wl~----~l~~~-~-p~~~f~iSa~~~~Gi~~ 289 (457)
++.. ......+ ++... + ...++++||.+|.|+..
T Consensus 146 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 146 VDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 8522 1111122 22221 1 13578899999999874
No 331
>PRK13351 elongation factor G; Reviewed
Probab=97.98 E-value=2.2e-05 Score=87.87 Aligned_cols=122 Identities=20% Similarity=0.122 Sum_probs=79.5
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCC-----cee------cC------CCCceeEEE---EEEcCCcEEEEecCCcccCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNV-----CKV------AP------IPGETKVWQ---YITLTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~-----~~v------s~------~pg~T~~~~---~~~~~~~i~liDtPGi~~~~ 365 (457)
-.+|+++|..|+|||||+++|+.... ..+ .+ ..|.|.... ...-+..+.|+||||.....
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df~ 87 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDFT 87 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHHH
Confidence 45899999999999999999984311 001 00 123333211 11124578999999986432
Q ss_pred CC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 366 KD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 366 ~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
.. ..+|.++..+...+........+...+...+.+.+...|++|.. .+..+.++.+..+.|.
T Consensus 88 ~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~~~~~i~~~l~~ 155 (687)
T PRK13351 88 GEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFKVLEDIEERFGK 155 (687)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 11 35677777565555554445555566777788899999999964 3567788888777665
No 332
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.98 E-value=5.8e-05 Score=69.40 Aligned_cols=140 Identities=10% Similarity=0.044 Sum_probs=76.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEE-EEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQ-YITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~-~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
.++|+++|.+|||||||++.+....... ..+.-|. ... .+.++. .+.|+||||-..... -..++.++.
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIED--AYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccc--eEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 4689999999999999999998755421 1121111 111 122222 478999999643221 123455544
Q ss_pred ecc--ccCCcccHHHHHHHHHHh----cCcceehhhcCCCCCCC---HHHHHHHHHHHcCCcc-----cCCcccHHHHHH
Q 012726 376 GVV--RVTNLEDAAEHIGEVLKR----VKKEHLKRAYKIKDWVD---ENDFLLQLCKSTGKLL-----RVCLFLHFISWY 441 (457)
Q Consensus 376 gvv--~~~~l~~~~~~i~~~L~~----~~~~~l~~~y~i~~~~~---~~efL~~la~r~g~l~-----kgg~pD~~~aa~ 441 (457)
.++ ..+.+.....+. ..+.+ -+.+.+.+.++.|-... ..+-...+|+..|... +-| .+++.+-.
T Consensus 80 v~d~~~~~Sf~~~~~~~-~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~-~~v~~~f~ 157 (172)
T cd04141 80 CYSVTDRHSFQEASEFK-KLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALR-HYIDDAFH 157 (172)
T ss_pred EEECCchhHHHHHHHHH-HHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCC-CCHHHHHH
Confidence 322 222333333222 22333 23577888899884221 2233456777777521 233 36666666
Q ss_pred HHHHHHHh
Q 012726 442 LFFYDHIT 449 (457)
Q Consensus 442 ~~l~d~~~ 449 (457)
.+++.+.+
T Consensus 158 ~l~~~~~~ 165 (172)
T cd04141 158 GLVREIRR 165 (172)
T ss_pred HHHHHHHH
Confidence 66666554
No 333
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=97.98 E-value=2.6e-05 Score=72.53 Aligned_cols=91 Identities=20% Similarity=0.154 Sum_probs=57.1
Q ss_pred HhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~iS 280 (457)
..+..+|++|+|+|+.++.+- ....+.+.+.. ...+.|+++|.||+|+............+... .+...+.+|
T Consensus 80 ~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~S 159 (182)
T PTZ00133 80 HYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCC 159 (182)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeee
Confidence 357889999999999765321 11123333322 12368999999999986432222222332211 123455789
Q ss_pred ccCCCChHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~ 298 (457)
|++|.|+.++++.|.+.+
T Consensus 160 a~tg~gv~e~~~~l~~~i 177 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANI 177 (182)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987655
No 334
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=97.98 E-value=3.8e-05 Score=69.16 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=59.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hc-CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~-~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|.+|+|+|+.++.+. ..+.+++.. .. .+.|+++|.||+|+.... ........+........+.+||+
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTF--ENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 456789999999999865532 334444442 22 248999999999997532 12222233333345567889999
Q ss_pred CCCChHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQF 297 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~ 297 (457)
++.|+++|++.|.+.
T Consensus 149 ~~~~v~~l~~~l~~~ 163 (165)
T cd01868 149 DGTNVEEAFKQLLTE 163 (165)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999999887643
No 335
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=97.98 E-value=2.5e-05 Score=74.49 Aligned_cols=88 Identities=17% Similarity=0.093 Sum_probs=58.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHH---HHHHhc----CCCcEEEEeecCCCCCh-hhHHHHHHHHHhcCCeeEEEee
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKEHC----KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k---~L~~~~----~~K~vIlVLNKiDLvp~-~~~~~wl~~l~~~~p~~~f~iS 280 (457)
.+..+|+||+|+|+.++.+. ..+.+ .+.... .+.|+|+|.||+||... .........+.+.+....+.+|
T Consensus 70 ~~~~ad~iilV~D~t~~~s~--~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iS 147 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSF--ENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVS 147 (215)
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence 46799999999999877432 22332 333221 23468999999999742 2222333344444555567789
Q ss_pred ccCCCChHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~ 298 (457)
|++|.|+++|++.|.+.+
T Consensus 148 Aktg~gv~~lf~~l~~~l 165 (215)
T cd04109 148 AKTGDRVNLLFQQLAAEL 165 (215)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987665
No 336
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=97.98 E-value=2.4e-05 Score=74.30 Aligned_cols=102 Identities=22% Similarity=0.207 Sum_probs=61.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-----CCcEEEEecCCcccCCC-----CCcc-ceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-----TKRIFLIDCPGVVYQNK-----DSET-DIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-----~~~i~liDtPGi~~~~~-----~~e~-dlvL~g 376 (457)
+|.++|.+|||||||++.|.......+ .+.++.....+.. +..+.|+||||...... -..+ +.++..
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t--~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRST--VTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCc--cCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999998654222 1222222222222 34689999999653211 1334 666664
Q ss_pred ccccCC---cccHHHHHHHHHHh-----cCcceehhhcCCCCC
Q 012726 377 VVRVTN---LEDAAEHIGEVLKR-----VKKEHLKRAYKIKDW 411 (457)
Q Consensus 377 vv~~~~---l~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~ 411 (457)
++.... +.+...++..++.. -..+.+...|+.|-+
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~ 122 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLF 122 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhc
Confidence 444332 33344455555432 256788999999853
No 337
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=97.97 E-value=3.3e-05 Score=72.70 Aligned_cols=90 Identities=13% Similarity=0.168 Sum_probs=61.1
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---HhcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
...+..+|++|+|+|+.++.+. ..+..++. ......|+++|.||+|+.+... .......+........|.+||.
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~--~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 150 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESF--VNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAK 150 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECC
Confidence 3456789999999999876432 22333333 3334689999999999976432 1222233333444667889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+.+|++.|....
T Consensus 151 ~~~gi~~lf~~l~~~~ 166 (199)
T cd04110 151 ENINVEEMFNCITELV 166 (199)
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999887655
No 338
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.97 E-value=2.2e-05 Score=67.00 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=44.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc---eecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEe
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC---KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~---~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
+|.|+|.+||||||||++|++.... ...+..+.|.......+. ..+.++|++|-...... ..+|.++..
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 5899999999999999999987764 123334444433333221 24789999998644332 356777764
Q ss_pred c
Q 012726 377 V 377 (457)
Q Consensus 377 v 377 (457)
.
T Consensus 81 ~ 81 (119)
T PF08477_consen 81 Y 81 (119)
T ss_dssp E
T ss_pred E
Confidence 4
No 339
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=97.97 E-value=2.3e-05 Score=71.03 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=57.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh----cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~----~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|.+|+|+|..++.+... ..+.+.+... .++.|+++|.||+|+.+.. ....-...+...+....+.+||+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 4568899999999977653211 2222334331 1468999999999997532 11111222233344556788999
Q ss_pred CCCChHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQF 297 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~ 297 (457)
++.|++++++.|.++
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999988755
No 340
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=97.97 E-value=1.8e-05 Score=86.93 Aligned_cols=113 Identities=22% Similarity=0.178 Sum_probs=72.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
+..+.|+||......... ..++.+.. -....+|+|+.|+|+.+. .+...+...+.+ .++|+++|+||+|+
T Consensus 42 ~i~lvDtPG~~~~~~~s~-----~e~v~~~~-l~~~~aDvvI~VvDat~l--er~l~l~~ql~~--~~~PiIIVlNK~Dl 111 (591)
T TIGR00437 42 DIEIVDLPGIYSLTTFSL-----EEEVARDY-LLNEKPDLVVNVVDASNL--ERNLYLTLQLLE--LGIPMILALNLVDE 111 (591)
T ss_pred EEEEEECCCccccCccch-----HHHHHHHH-HhhcCCCEEEEEecCCcc--hhhHHHHHHHHh--cCCCEEEEEehhHH
Confidence 345789999764322110 12333332 223578999999999763 222222233332 47999999999999
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
..+.....-.+.+.+.....++++||+++.|+++|.+.+.+..
T Consensus 112 ~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 112 AEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred HHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 7543322234555555556678899999999999999987654
No 341
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=97.96 E-value=3.6e-05 Score=70.69 Aligned_cols=90 Identities=13% Similarity=0.087 Sum_probs=58.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH----hcC-CCcEEEEeecCCCCChhh---HHHHHHHHHhcCCeeEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCK-HKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~----~~~-~K~vIlVLNKiDLvp~~~---~~~wl~~l~~~~p~~~f~i 279 (457)
..+..+|++++|+|+.++.+. ..+.+++.. ..+ ..|+|+|.||+||.+... ...-...+........+.+
T Consensus 68 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~ 145 (170)
T cd04108 68 TYYRGAQAIIIVFDLTDVASL--EHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSV 145 (170)
T ss_pred HHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEE
Confidence 456799999999999764321 123333332 112 245899999999975432 1222223333444556788
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||..+.|+++|.+.|.+.+.
T Consensus 146 Sa~~g~~v~~lf~~l~~~~~ 165 (170)
T cd04108 146 SALSGENVREFFFRVAALTF 165 (170)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887764
No 342
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.96 E-value=2.3e-05 Score=78.10 Aligned_cols=95 Identities=17% Similarity=0.091 Sum_probs=62.8
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..++|+||..+ +..++..++..+|++|+|+|+..........+.+.+.. .++|+|+++||+
T Consensus 63 ~~~i~liDTPG~~d--------------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~--~~~p~ivviNK~ 126 (270)
T cd01886 63 DHRINIIDTPGHVD--------------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADR--YNVPRIAFVNKM 126 (270)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 45566789999753 33456778899999999999988766555556666554 378999999999
Q ss_pred CCCChh---hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 254 DLVPAW---ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 254 DLvp~~---~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
|+.... ......+.+........+++|+..+
T Consensus 127 D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~ 160 (270)
T cd01886 127 DRTGADFFRVVEQIREKLGANPVPLQLPIGEEDD 160 (270)
T ss_pred CCCCCCHHHHHHHHHHHhCCCceEEEeccccCCC
Confidence 997432 1222222332222245677777543
No 343
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=97.95 E-value=2.3e-05 Score=68.85 Aligned_cols=88 Identities=17% Similarity=0.180 Sum_probs=57.5
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEE
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAF 277 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f 277 (457)
...+..+|++++|+|+.++... .....++... ..++|+++|+||+|+.+......+...+... .....+
T Consensus 62 ~~~~~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (159)
T cd04159 62 ERYCRGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCY 139 (159)
T ss_pred HHHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEE
Confidence 3456889999999999765321 1112222221 1468999999999997654433343333211 124567
Q ss_pred EeeccCCCChHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~ 296 (457)
.+|++++.|++++++.|.+
T Consensus 140 ~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 140 SISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred EEEeccCCChHHHHHHHhh
Confidence 8899999999999988754
No 344
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=97.95 E-value=5.9e-05 Score=68.29 Aligned_cols=88 Identities=16% Similarity=0.100 Sum_probs=59.3
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh----cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~----~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|.+|+|+|+.++.+. ..+..++... .++.|+++|.||+||.... ........+.+......+.+||
T Consensus 69 ~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 146 (166)
T cd04122 69 RSYYRGAAGALMVYDITRRSTY--NHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSA 146 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEEC
Confidence 4467899999999999876432 2344554431 2467899999999996432 1222233333344556778899
Q ss_pred cCCCChHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQ 296 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~ 296 (457)
+++.|+.+++..|..
T Consensus 147 ~~~~~i~e~f~~l~~ 161 (166)
T cd04122 147 KTGENVEDAFLETAK 161 (166)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999998776654
No 345
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=97.95 E-value=5.6e-05 Score=68.58 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=59.3
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
...+.++|++|+|+|+.++.+ ...+.+++.. . ..+.|+++|.||+|+.... ....-...+.+......+.+||
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKS--FENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSA 147 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHH--HHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 356789999999999977543 2234444432 1 2367999999999997432 1111122222333445688999
Q ss_pred cCCCChHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~ 298 (457)
.++.|++++++.|.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 148 KANINVEEAFFTLAKDI 164 (167)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999998886554
No 346
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.94 E-value=7.2e-05 Score=67.72 Aligned_cols=119 Identities=13% Similarity=0.106 Sum_probs=63.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
++|+++|.+|||||||++.++...... ...|....+ ...+.++. .+.++||||--..... ..++.++..
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHS-SHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCC-CCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 368999999999999999998765422 122222222 12233332 5789999995432211 245655553
Q ss_pred cc--ccCCcccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 377 VV--RVTNLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 377 vv--~~~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
++ ..+.+.....++..+.... ..+.+..-++.|-... ..+-...+|+..+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~ 136 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYG 136 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcC
Confidence 22 1222333333333333333 2356777888873221 1334555566554
No 347
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.94 E-value=3.6e-05 Score=71.07 Aligned_cols=90 Identities=13% Similarity=0.106 Sum_probs=58.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---HhcCCCcEEEEeecCCCCChh-----hHHHHHHHHHhcCCe-eEEEe
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAW-----ATKGWLRVLSKEYPS-LAFHA 279 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~~~K~vIlVLNKiDLvp~~-----~~~~wl~~l~~~~p~-~~f~i 279 (457)
.+..+|+||+|+|+.++.+... ....++. ...++.|+|+|.||+||.+.. ....-.+.+...+.. ..|.+
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 147 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDN-VEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLEC 147 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHH-HHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEc
Confidence 5688999999999977543211 1112332 223578999999999997532 111122223333333 56888
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|+.++++.|...+.
T Consensus 148 Sa~~~~~v~~~f~~l~~~~~ 167 (187)
T cd04132 148 SAKTMENVEEVFDTAIEEAL 167 (187)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999888876654
No 348
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.94 E-value=4.9e-05 Score=84.27 Aligned_cols=110 Identities=18% Similarity=0.087 Sum_probs=71.0
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
++.+..++|+||..+ +...+...+..+|++|+|+|+..+...........+... ..+++|+|+||
T Consensus 102 ~~~~~~liDtPG~~~--------------f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~~~iivvvNK 166 (632)
T PRK05506 102 PKRKFIVADTPGHEQ--------------YTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLL-GIRHVVLAVNK 166 (632)
T ss_pred CCceEEEEECCChHH--------------HHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CCCeEEEEEEe
Confidence 344566899999643 233344578899999999999887766555544444432 23678899999
Q ss_pred CCCCC--hhhHHHHHHHH----Hhc-CC-eeEEEeeccCCCChH------------HHHHHHHHH
Q 012726 253 CDLVP--AWATKGWLRVL----SKE-YP-SLAFHASINKSFGKG------------SLLSVLRQF 297 (457)
Q Consensus 253 iDLvp--~~~~~~wl~~l----~~~-~p-~~~f~iSa~~~~Gi~------------~Li~~L~~~ 297 (457)
+|+++ .+........+ ... +. ..++++||.++.|+. .|++.|..+
T Consensus 167 ~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~~~~~~wy~g~tL~~~l~~~ 231 (632)
T PRK05506 167 MDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTRSARMPWYEGPSLLEHLETV 231 (632)
T ss_pred cccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccccccCCCcccHhHHHHHHhcC
Confidence 99984 22222222222 221 22 347889999999986 466666554
No 349
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.94 E-value=3.8e-05 Score=70.03 Aligned_cols=100 Identities=19% Similarity=0.171 Sum_probs=60.0
Q ss_pred EEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEeccccC
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVT 381 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~ 381 (457)
|+++|.+|||||||++.+.+... ....+..|... ..+.. +..+.++||||-..... -..++.++..++..+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~--~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS--VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce--EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 78999999999999999997643 22223333321 11222 34689999999643221 145677777544332
Q ss_pred C--cccHHHHHHHHHHh-cCcceehhhcCCCC
Q 012726 382 N--LEDAAEHIGEVLKR-VKKEHLKRAYKIKD 410 (457)
Q Consensus 382 ~--l~~~~~~i~~~L~~-~~~~~l~~~y~i~~ 410 (457)
. +......+..++.. -+.+.+.+.+++|-
T Consensus 80 ~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl 111 (164)
T cd04162 80 SERLPLARQELHQLLQHPPDLPLVVLANKQDL 111 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCC
Confidence 2 22222334445443 34678889999984
No 350
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.93 E-value=4.4e-05 Score=73.76 Aligned_cols=102 Identities=15% Similarity=0.106 Sum_probs=59.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCCC-----CccceEEEecccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNKD-----SETDIVLKGVVRV 380 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~ 380 (457)
++|+++|.+|||||||++.++........+..| .+.....+ .-.+.|+||||-...... ..++.++..++-.
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig--~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt 78 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVG--GAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVS 78 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccc--eEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECC
Confidence 478999999999999999999876533222111 11111111 235789999997433211 3567766643322
Q ss_pred --CCcccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 381 --TNLEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 381 --~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
+.+.+....+..+.+.. ..+.+++-++.|-
T Consensus 79 ~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL 112 (220)
T cd04126 79 NVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDL 112 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccc
Confidence 22333333444444332 2457888888873
No 351
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.93 E-value=6.9e-05 Score=69.36 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=77.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccC-----CCCCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQ-----NKDSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~-----~~~~e~dlvL~gv 377 (457)
.+..+|.++|.+|+||||+++.|.......+.|.-|... ..+.. +-.+.++|.+|=... ..-..++.++..+
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~--~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVv 89 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNI--EEIKYKGYSLTIWDLGGQESFRPLWKSYFQNADGIIFVV 89 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEE--EEEEETTEEEEEEEESSSGGGGGGGGGGHTTESEEEEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccccCccccccc--ceeeeCcEEEEEEeccccccccccceeeccccceeEEEE
Confidence 578999999999999999999999876666555555432 23333 347899999996321 1114678888866
Q ss_pred cccC--CcccHHHHHHHHHHhc---CcceehhhcCCCC--CCCHHHHHHHH
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKD--WVDENDFLLQL 421 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~--~~~~~efL~~l 421 (457)
+..+ .+.+....+..+|... ..+.+...|+.|. ..+.+++.+.+
T Consensus 90 Dssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l 140 (175)
T PF00025_consen 90 DSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYL 140 (175)
T ss_dssp ETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHT
T ss_pred ecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhh
Confidence 5542 3455556666777642 4678888898874 34555654444
No 352
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=97.93 E-value=4.1e-05 Score=71.17 Aligned_cols=91 Identities=13% Similarity=0.089 Sum_probs=59.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCCCCChh-----hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-----ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiDLvp~~-----~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++|+|+|+.++.+... ..+.+.+....++.|+++|.||+|+.+.. ........+...+....+.+||+
T Consensus 70 ~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (193)
T cd04118 70 YYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSK 149 (193)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCC
Confidence 4568999999999977632111 12223333333468999999999997432 11122333333444556789999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+++|++.|.+.+-
T Consensus 150 ~~~gv~~l~~~i~~~~~ 166 (193)
T cd04118 150 TGQNVDELFQKVAEDFV 166 (193)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999886653
No 353
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=97.91 E-value=3.9e-05 Score=68.93 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=57.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHH---HHHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k---~L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|.+++|+|+.++.+. ..+.. .+... ..+.|+|+|.||+|+.+... ...-...+.+.+....|.+||+
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T smart00173 68 YMRTGEGFLLVYSITDRQSF--EEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAK 145 (164)
T ss_pred HHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecC
Confidence 46678999999999776431 12222 22221 23689999999999975321 1122223333344567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|...+
T Consensus 146 ~~~~i~~l~~~l~~~~ 161 (164)
T smart00173 146 ERVNVDEAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887654
No 354
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.91 E-value=4.1e-05 Score=80.86 Aligned_cols=109 Identities=19% Similarity=0.232 Sum_probs=67.2
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCc--------------e----------e------cCCCCceeEEEEEEc---
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVC--------------K----------V------APIPGETKVWQYITL--- 349 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~--------------~----------v------s~~pg~T~~~~~~~~--- 349 (457)
++..++|+++|.+++|||||+++|+..... . + ....|+|.+.....+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~ 83 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD 83 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence 356789999999999999999999842110 0 0 113478877654443
Q ss_pred CCcEEEEecCCcccC-----CCCCccceEEEeccccCC---cccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 350 TKRIFLIDCPGVVYQ-----NKDSETDIVLKGVVRVTN---LEDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 350 ~~~i~liDtPGi~~~-----~~~~e~dlvL~gvv~~~~---l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
+..+.|+||||.... .....+|.++..++..+. ..........++...+ ++.+...||+|-.
T Consensus 84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~ 154 (426)
T TIGR00483 84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSV 154 (426)
T ss_pred CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhcc
Confidence 347899999995321 111457887775655443 2221222223344444 4577789999853
No 355
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.91 E-value=5e-05 Score=83.53 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=75.2
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
+.....+.|+||..+ +..++..++..+|.+|+|+||..........+.+.+.. .+.|+|+|+||
T Consensus 62 ~~~kinlIDTPGh~D--------------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~--~~ip~IVviNK 125 (594)
T TIGR01394 62 NGTKINIVDTPGHAD--------------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALE--LGLKPIVVINK 125 (594)
T ss_pred CCEEEEEEECCCHHH--------------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHH--CCCCEEEEEEC
Confidence 344455788998753 23456778889999999999986543333344444433 47899999999
Q ss_pred CCCCCh---hhHHHHHHHHHh------cCCeeEEEeeccCCC----------ChHHHHHHHHHHHHhh
Q 012726 253 CDLVPA---WATKGWLRVLSK------EYPSLAFHASINKSF----------GKGSLLSVLRQFARLK 301 (457)
Q Consensus 253 iDLvp~---~~~~~wl~~l~~------~~p~~~f~iSa~~~~----------Gi~~Li~~L~~~~~~~ 301 (457)
+|+... +......+.+.. .....++++||.+++ |+..|++.|.+++|..
T Consensus 126 iD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 126 IDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 998643 233333444432 112346778999986 7889999998888754
No 356
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.91 E-value=4.9e-05 Score=73.01 Aligned_cols=107 Identities=11% Similarity=0.025 Sum_probs=61.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
...++|++||.+|||||||++.++.... ....+..|++.....+..+ -.+.++||||.-.... -..++.++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 4568999999999999999999865443 3345555554433223222 2678999999753221 13445555
Q ss_pred Eecccc--CCcccHHHHHHHHHHhc-CcceehhhcCCCC
Q 012726 375 KGVVRV--TNLEDAAEHIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 375 ~gvv~~--~~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
..++-. +.+......+..+...+ +.+.+.+.+++|-
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl 129 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhh
Confidence 433222 12222223333333332 2467788888873
No 357
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.91 E-value=3.8e-05 Score=84.57 Aligned_cols=121 Identities=20% Similarity=0.079 Sum_probs=75.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCc--------eec------CCCCceeEEEEEEc--------CCcEEEEecCCcccC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVC--------KVA------PIPGETKVWQYITL--------TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~--------~vs------~~pg~T~~~~~~~~--------~~~i~liDtPGi~~~ 364 (457)
.+++++|+.++|||||+.+|+..... .+. ..-|.|...+.+.+ .-.+.|+||||....
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 47999999999999999999753210 111 12355543322211 235889999998754
Q ss_pred CCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 365 NKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 365 ~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
... ..+|.++..++..+.+..........+...+.+.+.+.|++|-. .+.++..+.++...|.
T Consensus 88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~ 156 (600)
T PRK05433 88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGI 156 (600)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCC
Confidence 321 35677777666655554333333333445567889999999953 3455566667666554
No 358
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=97.91 E-value=3.7e-05 Score=68.76 Aligned_cols=88 Identities=16% Similarity=0.223 Sum_probs=57.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+..+|.+++|+|+.++.+... ..+.+.+... ..+.|+|+|+||+|+.+.. ........+.+.+....+.+||+++
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04136 69 YIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK 148 (163)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 4578999999999977643211 1122223321 2468999999999997532 2222233343444456788999999
Q ss_pred CChHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQ 296 (457)
Q Consensus 285 ~Gi~~Li~~L~~ 296 (457)
.|+.++++.|.+
T Consensus 149 ~~v~~l~~~l~~ 160 (163)
T cd04136 149 INVDEVFADLVR 160 (163)
T ss_pred CCHHHHHHHHHH
Confidence 999999988764
No 359
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.91 E-value=6.8e-05 Score=72.63 Aligned_cols=104 Identities=17% Similarity=0.110 Sum_probs=67.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCc--------------------eecC----CCCceeEE---------------EEE-
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVC--------------------KVAP----IPGETKVW---------------QYI- 347 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~--------------------~vs~----~pg~T~~~---------------~~~- 347 (457)
+|+++|..++|||||++.|...... .+++ .-|.+-.. ..+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4789999999999999999842110 0111 01111000 011
Q ss_pred EcCCcEEEEecCCcccCCCC-------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 348 TLTKRIFLIDCPGVVYQNKD-------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 348 ~~~~~i~liDtPGi~~~~~~-------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
.-+..+.|+||||....... ..+|+++..+...+.+......+..++...+.+.+.+.+++|..
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~ 151 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA 151 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc
Confidence 11346899999997432111 24678887666666666666777778888888999999999964
No 360
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=97.90 E-value=3.9e-05 Score=65.63 Aligned_cols=89 Identities=20% Similarity=0.119 Sum_probs=59.1
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHH--HHH-HHhcCCCcEEEEeecCCCCChhhHHHH--HHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLE--RHL-KEHCKHKHMILLLNKCDLVPAWATKGW--LRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~--k~L-~~~~~~K~vIlVLNKiDLvp~~~~~~w--l~~l~~~~p~~~f~iSa 281 (457)
...+..+|++++|+|+..+......... ..+ .....++|+++|+||+|+.+....... ............+.+|+
T Consensus 63 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 142 (157)
T cd00882 63 RLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSA 142 (157)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEec
Confidence 4567889999999999876543222111 111 122458999999999999865543332 22233333456778899
Q ss_pred cCCCChHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLR 295 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~ 295 (457)
.++.|+.++++.|.
T Consensus 143 ~~~~~i~~~~~~l~ 156 (157)
T cd00882 143 KTGENVEELFEELA 156 (157)
T ss_pred CCCCChHHHHHHHh
Confidence 99999999888764
No 361
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=97.90 E-value=6.6e-05 Score=71.04 Aligned_cols=94 Identities=19% Similarity=0.163 Sum_probs=59.8
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh----cCCCcEEEEeecCCCCChhhHH-HHHHHH-HhcCCeeEE
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH----CKHKHMILLLNKCDLVPAWATK-GWLRVL-SKEYPSLAF 277 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~----~~~K~vIlVLNKiDLvp~~~~~-~wl~~l-~~~~p~~~f 277 (457)
.....+..+|++|+|+|+.++.+... ..+.+.+... ..+.|+|+|.||+||....... .-.+.+ .+.+....|
T Consensus 73 ~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 152 (198)
T cd04142 73 PRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYL 152 (198)
T ss_pred HHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEE
Confidence 34456789999999999987643211 1122222221 2468999999999996532211 112222 223445678
Q ss_pred EeeccCCCChHHHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.+||++|.|+++|++.+....
T Consensus 153 e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 153 ECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred EecCCCCCCHHHHHHHHHHHh
Confidence 889999999999988876543
No 362
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=97.89 E-value=4.2e-05 Score=69.78 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=59.5
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
.+..+|++|+|+|+.++.+... ..+.+.+.....+.|+|+|.||+|+...... .....+.+......|.+||+++.|+
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v 147 (166)
T cd00877 69 YYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVK-AKQITFHRKKNLQYYEISAKSNYNF 147 (166)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCC-HHHHHHHHHcCCEEEEEeCCCCCCh
Confidence 3468999999999987643211 1122333333347999999999999743321 1222233344566788999999999
Q ss_pred HHHHHHHHHHH
Q 012726 288 GSLLSVLRQFA 298 (457)
Q Consensus 288 ~~Li~~L~~~~ 298 (457)
+++++.|.+.+
T Consensus 148 ~~~f~~l~~~~ 158 (166)
T cd00877 148 EKPFLWLARKL 158 (166)
T ss_pred HHHHHHHHHHH
Confidence 99999987655
No 363
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=97.89 E-value=6.1e-05 Score=66.92 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=56.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHH---HHHHh--cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKEH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k---~L~~~--~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+..+|.+++|+|..++.+- ..+.. .+... ..+.|+++|+||+|+........-...+.+......+.+||++
T Consensus 69 ~~~~~~~~i~v~~~~~~~s~--~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (162)
T cd04138 69 YMRTGEGFLCVFAINSRKSF--EDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKT 146 (162)
T ss_pred HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCC
Confidence 56789999999998764321 12222 22221 2468999999999997643222222223333345678889999
Q ss_pred CCChHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQF 297 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~ 297 (457)
+.|++++++.|.+.
T Consensus 147 ~~gi~~l~~~l~~~ 160 (162)
T cd04138 147 RQGVEEAFYTLVRE 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999887643
No 364
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=97.89 E-value=3.7e-05 Score=69.84 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=58.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhh-H------------HHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-T------------KGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-~------------~~wl~~l~~~~p 273 (457)
.+..+|++|+|.|+.++.+-..- .+...+....++.|+|+|.||+|+.+... . ..-...+.+...
T Consensus 66 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (174)
T smart00174 66 SYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence 46789999999999776432111 12233333346899999999999975321 1 111122333333
Q ss_pred -eeEEEeeccCCCChHHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
...|.+||+++.|+++|++.|.+.
T Consensus 146 ~~~~~e~Sa~~~~~v~~lf~~l~~~ 170 (174)
T smart00174 146 AVKYLECSALTQEGVREVFEEAIRA 170 (174)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHH
Confidence 367889999999999999887654
No 365
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=97.88 E-value=4.6e-05 Score=70.57 Aligned_cols=90 Identities=26% Similarity=0.300 Sum_probs=57.3
Q ss_pred HhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHh--------------
Q 012726 208 KVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-------------- 270 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~-------------- 270 (457)
..+..+|.+++|+|+.++-.- ....+...+.. ...+.|+++|+||+|+..........+++..
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVS 161 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCccccccccccccccc
Confidence 456789999999999865211 11122233221 1246899999999999643222222333321
Q ss_pred -cCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 271 -EYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 271 -~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
..+...|.+||+++.|+.++++.|.+.
T Consensus 162 ~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 162 GIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 123457889999999999999988654
No 366
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=97.88 E-value=6.2e-05 Score=67.42 Aligned_cols=91 Identities=14% Similarity=0.131 Sum_probs=58.1
Q ss_pred HhhhccCEEEEEeeCCCCCCCC-CHHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~-~~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+|++++|+|+.++.+-. ...+...+... .++.|+++|+||+|+.+.. ....-...+........+.+|+.++
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTG 148 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCC
Confidence 3567899999999997664211 11222223322 2467899999999987321 1111222233333356788999999
Q ss_pred CChHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFA 298 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~ 298 (457)
.|+.++++.|.+.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd01860 149 ENVNELFTEIAKKL 162 (163)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999887653
No 367
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=97.87 E-value=6.8e-05 Score=66.86 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred HHhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH-hcCCCcEEEEeecCCCCCh-hhHHHHHHHHHhcCCeeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~-~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
...+..+|.+++|+|+.++-+.. ...+..++.. ...++|+++|+||+|+.+. .....-...+...+....+.+||.
T Consensus 66 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 145 (164)
T cd04139 66 DNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAK 145 (164)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCC
Confidence 34668889999999987654211 1122222221 1247999999999999762 111111122222333456788999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+.+
T Consensus 146 ~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 146 TRQNVEKAFYDLVREI 161 (164)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998887654
No 368
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.87 E-value=2.2e-05 Score=78.59 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=35.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceec-CC-------CCcee-EEEEEEc-----CCcEEEEecCCcccC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVA-PI-------PGETK-VWQYITL-----TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs-~~-------pg~T~-~~~~~~~-----~~~i~liDtPGi~~~ 364 (457)
.++|+|+|.+|+|||||||+|++....... .. +.++. ......+ .-++.++||||+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~ 76 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN 76 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc
Confidence 578999999999999999999997654432 11 11111 1111111 226889999999754
No 369
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=97.86 E-value=6.7e-05 Score=66.51 Aligned_cols=90 Identities=18% Similarity=0.196 Sum_probs=58.8
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc--CCCcEEEEeecCCCCCh-hhHHHHHHHHHhcCCeeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~--~~K~vIlVLNKiDLvp~-~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
...+..+|++++|+|..++.+... ..+...+.... ...|+++|+||+|+.+. .........+...+....+.+|+.
T Consensus 65 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~ 144 (160)
T cd00876 65 DLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAK 144 (160)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccC
Confidence 346778999999999876542111 11222222222 37999999999999862 222334444444444556788999
Q ss_pred CCCChHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQ 296 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~ 296 (457)
++.|+.++++.|..
T Consensus 145 ~~~~i~~l~~~l~~ 158 (160)
T cd00876 145 DNINIDEVFKLLVR 158 (160)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999988864
No 370
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=97.86 E-value=4e-05 Score=70.17 Aligned_cols=88 Identities=17% Similarity=0.132 Sum_probs=56.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh--cCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCC-eeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH--CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYP-SLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p-~~~f~iSa~~~ 284 (457)
.+.++|++|+|+|+.++.+ . ..+..++... ..+.|+++|+||+||.+.... ..-.+.+.+.+. ...+.+||.++
T Consensus 74 ~~~~~d~~llv~d~~~~~s-~-~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (169)
T cd01892 74 ELAACDVACLVYDSSDPKS-F-SYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLG 151 (169)
T ss_pred hhhcCCEEEEEEeCCCHHH-H-HHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccC
Confidence 4589999999999977632 1 2233444321 136899999999999754311 011122333332 23477899999
Q ss_pred CChHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFA 298 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~ 298 (457)
.|+.+|++.|.+.+
T Consensus 152 ~~v~~lf~~l~~~~ 165 (169)
T cd01892 152 DSSNELFTKLATAA 165 (169)
T ss_pred ccHHHHHHHHHHHh
Confidence 99999998887654
No 371
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.86 E-value=3.3e-05 Score=86.85 Aligned_cols=106 Identities=19% Similarity=0.099 Sum_probs=67.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc---------eecC------CCCceeEEEEE------E-cCCcEEEEecCCcc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC---------KVAP------IPGETKVWQYI------T-LTKRIFLIDCPGVV 362 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~---------~vs~------~pg~T~~~~~~------~-~~~~i~liDtPGi~ 362 (457)
.-.+|+++|..++|||||+++|+..... ...+ ..|.|.....+ . -+.++.|+||||..
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3468999999999999999999742100 0001 13445432111 1 13468999999997
Q ss_pred cCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 363 YQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 363 ~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
..... ..+|.++..+...+.+......+...+...+.+.+...|++|.
T Consensus 98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~ 150 (720)
T TIGR00490 98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDR 150 (720)
T ss_pred ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhc
Confidence 53221 4678888867666666555555555555566677889999995
No 372
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.86 E-value=0.0001 Score=69.43 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=61.0
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCH-HHHHHHHHhcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~-~l~k~L~~~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
..+..+|++|+|.|..++.+...- .+.+.+....++.|+|||.||+||.... +...-.+.+.+......|.+||+++.
T Consensus 74 ~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~ 153 (189)
T cd04121 74 SYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNF 153 (189)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCC
Confidence 345799999999999887643221 1222333334678999999999996421 11112233333344567788999999
Q ss_pred ChHHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFAR 299 (457)
Q Consensus 286 Gi~~Li~~L~~~~~ 299 (457)
|++++++.|.+.+.
T Consensus 154 ~V~~~F~~l~~~i~ 167 (189)
T cd04121 154 NITESFTELARIVL 167 (189)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998876553
No 373
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.85 E-value=3.9e-05 Score=81.68 Aligned_cols=106 Identities=18% Similarity=0.103 Sum_probs=69.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC--c----------------------eec------CCCCceeEEEEEEc---C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV--C----------------------KVA------PIPGETKVWQYITL---T 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~--~----------------------~vs------~~pg~T~~~~~~~~---~ 350 (457)
++.++|+++|..++|||||+.+|+.... . .+. -..|+|.+.....+ +
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 5678999999999999999999974110 0 001 12467766544433 3
Q ss_pred CcEEEEecCCcccCC-----CCCccceEEEeccccCCc-------ccHHHHHHHHHHhcCcc-eehhhcCCC
Q 012726 351 KRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTNL-------EDAAEHIGEVLKRVKKE-HLKRAYKIK 409 (457)
Q Consensus 351 ~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~l-------~~~~~~i~~~L~~~~~~-~l~~~y~i~ 409 (457)
..+.|+||||....- ....+|.++..|...+.+ .........++..++.+ .+...|++|
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD 156 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMD 156 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccc
Confidence 468999999954321 114678888766666554 12333444567777765 468999999
No 374
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.84 E-value=7e-05 Score=69.85 Aligned_cols=90 Identities=16% Similarity=0.156 Sum_probs=59.0
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHh----cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEH----CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~----~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~i 279 (457)
..+..+|++|+|+|..++.+. ..+..+ +... ..+.|+|+|.||+|+..... ...-...+...+....|.+
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 143 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTF--ERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEA 143 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEe
Confidence 356789999999999765432 223333 3221 14689999999999964221 1111222333344567889
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|++++++.|.+.+.
T Consensus 144 SAk~~~~v~~l~~~l~~~l~ 163 (190)
T cd04144 144 SAKTNVNVERAFYTLVRALR 163 (190)
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999887654
No 375
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=97.84 E-value=3.2e-05 Score=69.50 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=56.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+.++|.+++|.|..++-+-.. ..+...+... ..++|+++|.||+|+.+... .......+...+....+++||.++
T Consensus 69 ~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04176 69 YIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK 148 (163)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence 4678999999999977643111 1222223321 14789999999999965322 112233333334456688899999
Q ss_pred CChHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQ 296 (457)
Q Consensus 285 ~Gi~~Li~~L~~ 296 (457)
.|+.+++..|.+
T Consensus 149 ~~v~~l~~~l~~ 160 (163)
T cd04176 149 TMVNELFAEIVR 160 (163)
T ss_pred CCHHHHHHHHHH
Confidence 999999888754
No 376
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.84 E-value=0.00021 Score=65.21 Aligned_cols=102 Identities=19% Similarity=0.142 Sum_probs=57.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC---CcEEEEecCCcccCCCC-----CccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
++|+++|.+|||||||++++..... ....+.++.+.. .+.++ ..+.++||||......- ..++.++..
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 4789999999999999999986443 122333332211 22232 25789999997433211 355666653
Q ss_pred ccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 377 VVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 377 vv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
.+-.+ .+..........+... ..+.+...+++|-
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl 116 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADL 116 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhh
Confidence 33222 2322222222223322 3577888888874
No 377
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.84 E-value=9.5e-05 Score=77.41 Aligned_cols=107 Identities=19% Similarity=0.180 Sum_probs=64.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEE-EEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMI-LLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vI-lVLNKiD 254 (457)
+..+.|+||.++ +.......+..+|++++|+|+..+..........++.. .+.|.+ +++||+|
T Consensus 76 ~~~liDtpGh~~--------------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~--~gi~~iIvvvNK~D 139 (394)
T TIGR00485 76 HYAHVDCPGHAD--------------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQ--VGVPYIVVFLNKCD 139 (394)
T ss_pred EEEEEECCchHH--------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEEecc
Confidence 445788888752 33455667789999999999988654444444444443 256655 6899999
Q ss_pred CCChhhH-H----HHHHHHHhcC--C--eeEEEeeccCCC-C-------hHHHHHHHHHHH
Q 012726 255 LVPAWAT-K----GWLRVLSKEY--P--SLAFHASINKSF-G-------KGSLLSVLRQFA 298 (457)
Q Consensus 255 Lvp~~~~-~----~wl~~l~~~~--p--~~~f~iSa~~~~-G-------i~~Li~~L~~~~ 298 (457)
+++.+.. + ...+++.... + ..++++|+.++. | ...|++.|..+.
T Consensus 140 l~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~ 200 (394)
T TIGR00485 140 MVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI 200 (394)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence 9865322 1 1222232221 1 456788998764 2 345555555443
No 378
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=97.83 E-value=9.1e-05 Score=78.27 Aligned_cols=101 Identities=17% Similarity=0.065 Sum_probs=61.5
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHH--HHHhcCCCcEEEEeec
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERH--LKEHCKHKHMILLLNK 252 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~--L~~~~~~K~vIlVLNK 252 (457)
.+..+.|++|.. .+++.+...+..+|++|+|+|+.++.........+. +.......++|+|+||
T Consensus 85 ~~i~iiDtpGh~--------------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK 150 (426)
T TIGR00483 85 YEVTIVDCPGHR--------------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINK 150 (426)
T ss_pred eEEEEEECCCHH--------------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEC
Confidence 344567888853 345556667789999999999988732212221111 2222224578899999
Q ss_pred CCCCC--hhh----HHHHHHHHHhcC----CeeEEEeeccCCCChHH
Q 012726 253 CDLVP--AWA----TKGWLRVLSKEY----PSLAFHASINKSFGKGS 289 (457)
Q Consensus 253 iDLvp--~~~----~~~wl~~l~~~~----p~~~f~iSa~~~~Gi~~ 289 (457)
+|+++ ... ...+.+++.... ...++++||+++.|+.+
T Consensus 151 ~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 151 MDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred hhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 99974 221 123333333221 24578899999999874
No 379
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.82 E-value=4.6e-05 Score=70.36 Aligned_cols=88 Identities=14% Similarity=0.122 Sum_probs=58.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhh-------------HHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-------------~~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|..++.+.... .+...+....++.|+|+|.||+||.+... .....+.+.+...
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~ 148 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLK 148 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhC
Confidence 56789999999999876532211 12333433345789999999999965321 1122233333343
Q ss_pred -eeEEEeeccCCCChHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
...|.+||++|.|+.++++.+..
T Consensus 149 ~~~~~e~SA~tg~~v~~~f~~~~~ 172 (175)
T cd01874 149 AVKYVECSALTQKGLKNVFDEAIL 172 (175)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHH
Confidence 56788999999999999888765
No 380
>PLN00223 ADP-ribosylation factor; Provisional
Probab=97.82 E-value=8.1e-05 Score=69.21 Aligned_cols=90 Identities=18% Similarity=0.123 Sum_probs=56.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcC----CeeEEEeec
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHASI 281 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~----p~~~f~iSa 281 (457)
.+..+|++|+|+|+.++..-.. ..+.+.+.. ..++.|+++|.||+|+..........+.+.-.. +...+.+||
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccC
Confidence 4678999999999987642110 112222221 124689999999999865433333333332111 124557899
Q ss_pred cCCCChHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~ 298 (457)
++|.|+.++++.|.+.+
T Consensus 161 ~~g~gv~e~~~~l~~~~ 177 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNI 177 (181)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999886654
No 381
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=97.82 E-value=7.1e-05 Score=67.40 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=57.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHH--hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~--~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+..+|.+++|+|..++.+..+ ..+...+.. ...+.|+++|.||+||.+... .....+.+.+......+.+||+++
T Consensus 69 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (164)
T cd04175 69 YMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK 148 (164)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence 4677899999999866543211 112222222 125789999999999975321 112223333334456788999999
Q ss_pred CChHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQF 297 (457)
Q Consensus 285 ~Gi~~Li~~L~~~ 297 (457)
.|+.+++..|.+.
T Consensus 149 ~~v~~~~~~l~~~ 161 (164)
T cd04175 149 INVNEIFYDLVRQ 161 (164)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999888654
No 382
>PRK10218 GTP-binding protein; Provisional
Probab=97.81 E-value=0.00011 Score=81.05 Aligned_cols=111 Identities=18% Similarity=0.177 Sum_probs=74.4
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+. ..++..++..+|.+|+|+|+.+........+...+.. .+.|.|+|+||+|
T Consensus 68 ~~inliDTPG~~df--------------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~--~gip~IVviNKiD 131 (607)
T PRK10218 68 YRINIVDTPGHADF--------------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFA--YGLKPIVVINKVD 131 (607)
T ss_pred EEEEEEECCCcchh--------------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHH--cCCCEEEEEECcC
Confidence 34456788886432 2345567899999999999987654444444444433 4789999999999
Q ss_pred CCC---hhhHHHHHHHHHhc------CCeeEEEeeccCCC----------ChHHHHHHHHHHHHhh
Q 012726 255 LVP---AWATKGWLRVLSKE------YPSLAFHASINKSF----------GKGSLLSVLRQFARLK 301 (457)
Q Consensus 255 Lvp---~~~~~~wl~~l~~~------~p~~~f~iSa~~~~----------Gi~~Li~~L~~~~~~~ 301 (457)
+.. .+.+....+.+... ....++++||.+|+ |+..|++.|..++|..
T Consensus 132 ~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 132 RPGARPDWVVDQVFDLFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCCCchhHHHHHHHHHHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 853 23444444444321 12346788999998 5788999888887754
No 383
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.81 E-value=0.00012 Score=82.13 Aligned_cols=89 Identities=16% Similarity=0.178 Sum_probs=60.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChh--hHHHHHHHH---HhcC--CeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVL---SKEY--PSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~--~~~~wl~~l---~~~~--p~~~f~iS 280 (457)
..+..+|++|+|+|+.+............+.. .+.|+|+|+||+|+.... ....++..+ ...+ ...++++|
T Consensus 314 rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~--~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VS 391 (742)
T CHL00189 314 RGANVTDIAILIIAADDGVKPQTIEAINYIQA--ANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPIS 391 (742)
T ss_pred HHHHHCCEEEEEEECcCCCChhhHHHHHHHHh--cCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEE
Confidence 46688999999999987654443344444443 478999999999997532 122222211 1111 24578899
Q ss_pred ccCCCChHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~ 298 (457)
|.+|.|+++|++.|..++
T Consensus 392 AktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 392 ASQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCCHHHHHHhhhhhh
Confidence 999999999999887654
No 384
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.81 E-value=0.00011 Score=72.16 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=62.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEe
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
++|+++|.+|||||||++.+++..... ....++.+ ...+.++. .+.|+||||...... -..+|+++..
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~--~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEE--QYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 368999999999999999998654421 22222221 12233332 567999999643211 1345666653
Q ss_pred ccccCC---cccHHHHHHHHHHh-----------cCcceehhhcCCCCCC----CHHHHHHHHH
Q 012726 377 VVRVTN---LEDAAEHIGEVLKR-----------VKKEHLKRAYKIKDWV----DENDFLLQLC 422 (457)
Q Consensus 377 vv~~~~---l~~~~~~i~~~L~~-----------~~~~~l~~~y~i~~~~----~~~efL~~la 422 (457)
..+.+ +++....+.+++.. ...+.+...+++|-.. +.+++.+.++
T Consensus 79 -fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~ 141 (247)
T cd04143 79 -FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVG 141 (247)
T ss_pred -EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHH
Confidence 33322 22222333333321 2457788999998532 3444444443
No 385
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=97.81 E-value=9.5e-05 Score=69.49 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=57.0
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCCh-hhH--HHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPA-WAT--KGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~-~~~--~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+|+.+. ... ....+.....+....+.+||.
T Consensus 67 ~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 146 (198)
T cd04147 67 SIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAK 146 (198)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCC
Confidence 5689999999999977542211 1111222221 146899999999999763 211 111122221222445678999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+.+|++.|.+.+.
T Consensus 147 ~g~gv~~l~~~l~~~~~ 163 (198)
T cd04147 147 DNENVLEVFKELLRQAN 163 (198)
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999876653
No 386
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.80 E-value=5.1e-05 Score=85.52 Aligned_cols=105 Identities=20% Similarity=0.163 Sum_probs=66.9
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCC---------------CceeE-------EEEEEcCCcEEEEecCCccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP---------------GETKV-------WQYITLTKRIFLIDCPGVVY 363 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p---------------g~T~~-------~~~~~~~~~i~liDtPGi~~ 363 (457)
-.+|+++|+.++|||||+.+|+........... |.|.. |++-.-+..+.|+||||...
T Consensus 20 iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~d 99 (731)
T PRK07560 20 IRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVD 99 (731)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccC
Confidence 457999999999999999999753221111111 22221 11111134688999999875
Q ss_pred CCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 364 QNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 364 ~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
.... ..+|.++..|...+.+......+...+.+.+.+.+...||+|.
T Consensus 100 f~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~ 151 (731)
T PRK07560 100 FGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDR 151 (731)
T ss_pred hHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchh
Confidence 4222 3578888777777776655555555555556667889999984
No 387
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=97.79 E-value=0.00013 Score=64.85 Aligned_cols=87 Identities=18% Similarity=0.211 Sum_probs=57.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHH---HHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+.++|.+++|+|+.++.+. ..+..++ ... ..+.|+++|+||+|+.... ....-...+.+.+....+.+|+.+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (162)
T cd04123 69 YYRDADGAILVYDITDADSF--QKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT 146 (162)
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 45789999999998765421 2222222 221 2258999999999997432 112222333344455678899999
Q ss_pred CCChHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQF 297 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~ 297 (457)
+.|+.++++.|.+.
T Consensus 147 ~~gi~~~~~~l~~~ 160 (162)
T cd04123 147 GKGIEELFLSLAKR 160 (162)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999988654
No 388
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.79 E-value=0.00014 Score=68.50 Aligned_cols=90 Identities=17% Similarity=0.120 Sum_probs=59.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHH---HHh-----cCCCcEEEEeecCCCCC-hhhHHHHHHHHHhcCC-eeEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH-----CKHKHMILLLNKCDLVP-AWATKGWLRVLSKEYP-SLAF 277 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~~-----~~~K~vIlVLNKiDLvp-~~~~~~wl~~l~~~~p-~~~f 277 (457)
..+..+|++|+|+|+.++.+-. .+..++ ... ..+.|+|+|.||+||.+ .......++.+.+... ...|
T Consensus 69 ~~~~~a~~~ilv~D~t~~~s~~--~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 69 VYYRGAVGAIIVFDVTRPSTFE--AVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEE
Confidence 4568999999999997764321 222222 110 24679999999999973 2222223333333343 4578
Q ss_pred EeeccCCCChHHHHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.+||+++.|++++++.|.+.+.
T Consensus 147 e~Sak~~~~v~e~f~~l~~~l~ 168 (201)
T cd04107 147 ETSAKEGINIEEAMRFLVKNIL 168 (201)
T ss_pred EEeCCCCCCHHHHHHHHHHHHH
Confidence 8999999999999988876553
No 389
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.79 E-value=7.7e-05 Score=67.34 Aligned_cols=93 Identities=19% Similarity=0.184 Sum_probs=62.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------CccceEEEecc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD---------SETDIVLKGVV 378 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~---------~e~dlvL~gvv 378 (457)
+|++||.+++|||||+++|.+... ...-|...++. . .+|||||=...... .++|+++...+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~-----~~~KTq~i~~~---~--~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~d 72 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI-----RYKKTQAIEYY---D--NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQD 72 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC-----CcCccceeEec---c--cEEECChhheeCHHHHHHHHHHHhhCCEEEEEec
Confidence 689999999999999999999654 23345554443 2 45999996544322 47888887666
Q ss_pred ccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCC
Q 012726 379 RVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVD 413 (457)
Q Consensus 379 ~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~ 413 (457)
..+...- +-.....-..++.|-+..++|-..+
T Consensus 73 at~~~~~---~pP~fa~~f~~pvIGVITK~Dl~~~ 104 (143)
T PF10662_consen 73 ATEPRSV---FPPGFASMFNKPVIGVITKIDLPSD 104 (143)
T ss_pred CCCCCcc---CCchhhcccCCCEEEEEECccCccc
Confidence 5543211 1112334456789999999987643
No 390
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=97.79 E-value=0.00011 Score=65.77 Aligned_cols=88 Identities=16% Similarity=0.042 Sum_probs=58.7
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH----hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~----~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|.+++|+|+.++.+. ..+..++.. ..++.|+++|+||+|+.+... ...-...+........+.+|+
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 144 (161)
T cd04113 67 RSYYRGAAGALLVYDITNRTSF--EALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSA 144 (161)
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEEC
Confidence 3456789999999999876432 223333332 135789999999999975321 111222233334466888999
Q ss_pred cCCCChHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQ 296 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~ 296 (457)
+++.|++++++.+.+
T Consensus 145 ~~~~~i~~~~~~~~~ 159 (161)
T cd04113 145 LTGENVEEAFLKCAR 159 (161)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999888753
No 391
>PRK12740 elongation factor G; Reviewed
Probab=97.76 E-value=7.3e-05 Score=83.39 Aligned_cols=116 Identities=20% Similarity=0.116 Sum_probs=75.5
Q ss_pred eecCCCchHHHHHHHhCCCCc-----------eecC------CCCceeEEEEE---EcCCcEEEEecCCcccCCC-----
Q 012726 312 VGYPNVGKSSVINTLRTKNVC-----------KVAP------IPGETKVWQYI---TLTKRIFLIDCPGVVYQNK----- 366 (457)
Q Consensus 312 vG~pNvGKSSliN~L~~~~~~-----------~vs~------~pg~T~~~~~~---~~~~~i~liDtPGi~~~~~----- 366 (457)
||.+|+|||||+|+|+..... .+.+ ..|.|...... .-+..+.|+||||......
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 699999999999999643211 1111 13444433221 2245799999999864211
Q ss_pred CCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 367 DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 367 ~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
-..+|.++..+...+........+...+...+.+.+...|++|.. .+..+.++.+....|.
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~l~~~l~~ 142 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFRVLAQLQEKLGA 142 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHHCC
Confidence 135788888666666555444455556666677889999999964 4556788888877664
No 392
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=97.76 E-value=0.00017 Score=79.22 Aligned_cols=88 Identities=18% Similarity=0.234 Sum_probs=59.5
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhH------------------HHH------
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------KGW------ 264 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~------------------~~w------ 264 (457)
.+..+|++++|+|+.+............+.. .+.|+|+|+||+|+.+.+.. ..+
T Consensus 89 ~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~~~ 166 (590)
T TIGR00491 89 GGALADLAILIVDINEGFKPQTQEALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKVYN 166 (590)
T ss_pred HHhhCCEEEEEEECCcCCCHhHHHHHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHHHH
Confidence 5578999999999987655444444455543 37899999999999864311 000
Q ss_pred -HHHHHhc-------------C-CeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 265 -LRVLSKE-------------Y-PSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 265 -l~~l~~~-------------~-p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+..+.+. . ...++++||.+|.|+++|+..|..++
T Consensus 167 lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 167 LVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0111111 1 24678999999999999998876433
No 393
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=97.75 E-value=7.5e-05 Score=67.43 Aligned_cols=91 Identities=23% Similarity=0.222 Sum_probs=57.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh---cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~---~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|.||+|+.... ........+.+.+....|.+|+.
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 146 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAA 146 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCC
Confidence 45678999999999977643211 1222333332 2378999999999985432 11112222333334567888999
Q ss_pred CCC-ChHHHHHHHHHHH
Q 012726 283 KSF-GKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~-Gi~~Li~~L~~~~ 298 (457)
++. |++++++.|.+.+
T Consensus 147 ~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 147 EDYDGVHSVFHELCREV 163 (165)
T ss_pred CCchhHHHHHHHHHHHH
Confidence 985 8999998887554
No 394
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.75 E-value=0.0001 Score=71.99 Aligned_cols=69 Identities=20% Similarity=0.240 Sum_probs=49.7
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
++.+..+.|+||..+ +..+...++..+|.+++|+|+.+........+.+.+.. .++|+++++||
T Consensus 62 ~~~~i~liDTPG~~~--------------f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~--~~~P~iivvNK 125 (237)
T cd04168 62 EDTKVNLIDTPGHMD--------------FIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRK--LNIPTIIFVNK 125 (237)
T ss_pred CCEEEEEEeCCCccc--------------hHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEEC
Confidence 344556788988753 23345667888999999999988765444445555544 37899999999
Q ss_pred CCCCC
Q 012726 253 CDLVP 257 (457)
Q Consensus 253 iDLvp 257 (457)
+|+..
T Consensus 126 ~D~~~ 130 (237)
T cd04168 126 IDRAG 130 (237)
T ss_pred ccccC
Confidence 99974
No 395
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=97.75 E-value=0.0002 Score=66.14 Aligned_cols=103 Identities=20% Similarity=0.244 Sum_probs=57.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE-EEEcCC---cEEEEecCCcccCCC-----CCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ-YITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~-~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
++|+++|.+|||||||++.+...... ....|....... .+.++. .+.|+||||--.... -..++.++..+
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~-~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 68999999999999999999875431 111222111111 222222 577999999753321 13566666533
Q ss_pred ccc--CCcccHHH-HHHHHHHhc-CcceehhhcCCCC
Q 012726 378 VRV--TNLEDAAE-HIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~--~~l~~~~~-~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
+-. +.+.+... .+..+.... +.+.+.+.++.|-
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl 117 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 117 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhh
Confidence 322 22333322 222232222 3577888888874
No 396
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.75 E-value=0.00014 Score=67.87 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=56.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEEec-
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGV- 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gv- 377 (457)
+|+++|.+|||||||++.+.+...... .+..+..- ...+.++ ..+.|+||||--.... -..++.++...
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENY-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeee-EEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 689999999999999999987654221 12111111 1122222 2578999999643211 13456555422
Q ss_pred -cccCCcccHHH-HHHHHHHhc-CcceehhhcCCCC
Q 012726 378 -VRVTNLEDAAE-HIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 378 -v~~~~l~~~~~-~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
...+.+..... ++..+.... +.+.+.+.++.|-
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl 116 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDL 116 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhh
Confidence 22222322222 333343332 3467888888874
No 397
>PLN03118 Rab family protein; Provisional
Probab=97.74 E-value=0.00012 Score=69.39 Aligned_cols=90 Identities=14% Similarity=0.039 Sum_probs=59.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHH----HHHHh--cCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLER----HLKEH--CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k----~L~~~--~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iS 280 (457)
..+..+|++|+|+|+.++.+. ..+.+ .+... ....|+|+|.||+|+.+.... ......+........|.+|
T Consensus 81 ~~~~~~d~~vlv~D~~~~~sf--~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~S 158 (211)
T PLN03118 81 SYYRNAQGIILVYDVTRRETF--TNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECS 158 (211)
T ss_pred HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEe
Confidence 456789999999999765422 12222 22211 134689999999999753221 2222333334455678899
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~ 299 (457)
|+++.|++++++.|...+.
T Consensus 159 Ak~~~~v~~l~~~l~~~~~ 177 (211)
T PLN03118 159 AKTRENVEQCFEELALKIM 177 (211)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999887664
No 398
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=97.73 E-value=7.1e-05 Score=70.94 Aligned_cols=106 Identities=18% Similarity=0.150 Sum_probs=57.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecC-CCCceeEEE-----E-------------------------------EE
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAP-IPGETKVWQ-----Y-------------------------------IT 348 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~-~pg~T~~~~-----~-------------------------------~~ 348 (457)
++|+++|..++|||||+.+|.+..... .+. .-|.|.... + ..
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 479999999999999999997642100 000 001111000 0 00
Q ss_pred cCCcEEEEecCCcccCC-----CCCccceEEEeccccCC-cccHHHHHHHHHHhcC-cceehhhcCCCCCC
Q 012726 349 LTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTN-LEDAAEHIGEVLKRVK-KEHLKRAYKIKDWV 412 (457)
Q Consensus 349 ~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~-l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~~ 412 (457)
....+.|+||||...-. ....+|.++..+...+. ...........+...+ ++.+...+|+|-..
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 11578999999953211 11356777775555432 2222222333344344 35788999999643
No 399
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=97.73 E-value=4.6e-05 Score=80.15 Aligned_cols=106 Identities=20% Similarity=0.202 Sum_probs=62.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEE-----------------------------EcCCcE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYI-----------------------------TLTKRI 353 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~-----------------------------~~~~~i 353 (457)
..++|+++|++++|||||+++|.+..... -.-..|.|...-+. .....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 46889999999999999999997642100 00011222211100 012468
Q ss_pred EEEecCCcccCCC-----CCccceEEEeccccCCc-cc-HHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 354 FLIDCPGVVYQNK-----DSETDIVLKGVVRVTNL-ED-AAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 354 ~liDtPGi~~~~~-----~~e~dlvL~gvv~~~~l-~~-~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
.++||||...... ...+|.++..++..+.. .. ..+++. ++...+ ++.+...+|+|-.
T Consensus 83 ~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~-~l~~~gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM-ALEIIGIKNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH-HHHHcCCCeEEEEEEccccC
Confidence 9999999633211 13468888766665543 22 233443 455554 4578889999853
No 400
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=97.73 E-value=0.00013 Score=77.62 Aligned_cols=107 Identities=23% Similarity=0.245 Sum_probs=67.0
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..++|++|+...... +- +.-++.....+..+|++|+|+|+.++.+.... +...+.. .++|+|+|+||+|+.
T Consensus 253 v~l~DTaG~~~~~~~-ie-----~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~--~~~piIlV~NK~Dl~ 323 (442)
T TIGR00450 253 IKLLDTAGIREHADF-VE-----RLGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK--SKKPFILVLNKIDLK 323 (442)
T ss_pred EEEeeCCCcccchhH-HH-----HHHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh--CCCCEEEEEECccCC
Confidence 346889997532110 00 11134456788999999999999887654332 3233322 478999999999997
Q ss_pred ChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 257 p~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+.. .. .+.+......+.+|+++ .|++++++.|.+.+
T Consensus 324 ~~~-~~----~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i 359 (442)
T TIGR00450 324 INS-LE----FFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI 359 (442)
T ss_pred Ccc-hh----hhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence 542 12 12222223356779987 58888888877654
No 401
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=97.73 E-value=0.00023 Score=66.98 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=70.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.++||||||+.++...... ...+.+|..-....+.++. .+.|+||||--.... -..++.++.
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill 84 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence 3578999999999999999999875431 1122233211112233332 578999999753221 135666665
Q ss_pred eccc--cCCcccHHHHHHHHHHhc-CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVR--VTNLEDAAEHIGEVLKRV-KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~--~~~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..+- .+.++.....+.++.... ..+.+.+-++.|-.. -..+-.+.+|++.|.
T Consensus 85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~ 142 (189)
T cd04121 85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGM 142 (189)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCC
Confidence 3332 223333334444443332 346788888888422 124557788888775
No 402
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.73 E-value=0.00015 Score=83.96 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=61.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHH--------------HHHH-------
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK--------------GWLR------- 266 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~--------------~wl~------- 266 (457)
.....+|++++|+|+.+.+........+.+.. .+.|+|+|+||+|+.+.|... .-.+
T Consensus 545 ~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 545 RGGSLADLAVLVVDINEGFKPQTIEAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred hhcccCCEEEEEEECcccCCHhHHHHHHHHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 34577999999999987665555555555554 368999999999998644310 0011
Q ss_pred ----HHHhc--------------CCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 267 ----VLSKE--------------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 267 ----~l~~~--------------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.|.+. ....++++||.+|.|+++|+..|.....
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11111 1246788999999999999988865443
No 403
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=97.73 E-value=0.0002 Score=69.70 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=37.7
Q ss_pred CcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 244 KHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 244 K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.|.++|+||+|+++......| .... ..+.+||.++.|+++|.+.|-+.+
T Consensus 177 ~p~iiV~NK~Dl~~~~~~~~~----~~~~--~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLISIEELDLL----ARQP--NSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCCHHHHHHH----hcCC--CEEEEcCCCCCCHHHHHHHHHHHh
Confidence 689999999999887654432 2222 256679999999999999988765
No 404
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=97.73 E-value=0.00016 Score=66.52 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=58.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH-HHHHHHHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH-HLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~-~l~k~L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+..+|.+|+|+|+.++.+.... .+.+.+... .++.|+|+|.||+|+..... ...-...+.+......|.+||+.+
T Consensus 70 ~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~ 149 (172)
T cd04141 70 YMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALR 149 (172)
T ss_pred HhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCC
Confidence 45688999999999877543221 122334332 24789999999999854321 111122233334556778999999
Q ss_pred CChHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFA 298 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~ 298 (457)
.|++++++.|.+.+
T Consensus 150 ~~v~~~f~~l~~~~ 163 (172)
T cd04141 150 HYIDDAFHGLVREI 163 (172)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988886544
No 405
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=97.72 E-value=9.4e-05 Score=67.58 Aligned_cols=86 Identities=12% Similarity=0.155 Sum_probs=56.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChhh-------------HHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-------------~~~wl~~l~~~~p 273 (457)
.+..+|++|+|.|+.++.+... ..+...+....++.|+++|.||+||.+... ...-...+.+...
T Consensus 68 ~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 147 (173)
T cd04130 68 CYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIG 147 (173)
T ss_pred ccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhC
Confidence 5678999999999987753321 122333333335789999999999975321 1111222333333
Q ss_pred -eeEEEeeccCCCChHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVL 294 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L 294 (457)
...+.+||+++.|+++|.+.+
T Consensus 148 ~~~~~e~Sa~~~~~v~~lf~~~ 169 (173)
T cd04130 148 ACEYIECSALTQKNLKEVFDTA 169 (173)
T ss_pred CCeEEEEeCCCCCCHHHHHHHH
Confidence 367889999999999998765
No 406
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.71 E-value=0.00011 Score=67.75 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=57.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhh-HH------------HHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-TK------------GWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-~~------------~wl~~l~~~~p 273 (457)
.+..+|++|+|.|+.++.+...- .+...+....++.|+|+|.||+||.+... .. .-...+.+.+.
T Consensus 69 ~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 148 (174)
T cd01871 69 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 148 (174)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 46789999999999876432221 12233333345789999999999964321 11 11122333344
Q ss_pred -eeEEEeeccCCCChHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
...|.+||+++.|++++++.|.+
T Consensus 149 ~~~~~e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 149 AVKYLECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred CcEEEEecccccCCHHHHHHHHHH
Confidence 36678999999999999888753
No 407
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=97.71 E-value=0.00011 Score=70.69 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=60.3
Q ss_pred ccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 212 SSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 212 ~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
.+|++++|+|+.++.+... ..+...+... ..+.|+|+|.||+|+.+... .......+...+....+.+||.++.|+
T Consensus 72 ~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv 151 (221)
T cd04148 72 QGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNV 151 (221)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCH
Confidence 8999999999987743211 2222333332 14689999999999975432 122222333444555678899999999
Q ss_pred HHHHHHHHHHHHhh
Q 012726 288 GSLLSVLRQFARLK 301 (457)
Q Consensus 288 ~~Li~~L~~~~~~~ 301 (457)
++|++.|.+.+...
T Consensus 152 ~~l~~~l~~~~~~~ 165 (221)
T cd04148 152 DELLEGIVRQIRLR 165 (221)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998777543
No 408
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=97.71 E-value=9.1e-05 Score=66.75 Aligned_cols=88 Identities=17% Similarity=0.109 Sum_probs=56.5
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChhhHHH------------HHHHHHhcCC-
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKG------------WLRVLSKEYP- 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~------------wl~~l~~~~p- 273 (457)
.+..+|++++|+|+.++.+... ..+...+.....+.|+++|+||+|+.+...... -...+...+.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 147 (171)
T cd00157 68 SYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA 147 (171)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC
Confidence 3478999999999976533211 112223333335799999999999976543211 1122222333
Q ss_pred eeEEEeeccCCCChHHHHHHHHH
Q 012726 274 SLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 274 ~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
...+.+|++++.|+++|++.|.+
T Consensus 148 ~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 148 IGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred eEEEEeecCCCCCHHHHHHHHhh
Confidence 36788899999999999888753
No 409
>PLN03126 Elongation factor Tu; Provisional
Probab=97.70 E-value=0.00024 Score=76.28 Aligned_cols=94 Identities=18% Similarity=0.116 Sum_probs=59.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKiD 254 (457)
+..++|+||.++ +..++...+..+|++++|+||.+.......+....+.. .++| +|+++||+|
T Consensus 145 ~i~liDtPGh~~--------------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~--~gi~~iIvvvNK~D 208 (478)
T PLN03126 145 HYAHVDCPGHAD--------------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQ--VGVPNMVVFLNKQD 208 (478)
T ss_pred EEEEEECCCHHH--------------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCeEEEEEeccc
Confidence 445788888753 44556777889999999999987765444444444443 3666 678999999
Q ss_pred CCChhhH-H----HHHHHHHhc-CC---eeEEEeeccCCC
Q 012726 255 LVPAWAT-K----GWLRVLSKE-YP---SLAFHASINKSF 285 (457)
Q Consensus 255 Lvp~~~~-~----~wl~~l~~~-~p---~~~f~iSa~~~~ 285 (457)
+++.+.. + +..+++... ++ ..++++|+.++.
T Consensus 209 l~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 209 QVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccc
Confidence 9874322 2 222333331 22 346677887663
No 410
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=97.70 E-value=0.00012 Score=82.76 Aligned_cols=88 Identities=23% Similarity=0.185 Sum_probs=58.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh--hhHHHHHHH---HHhcC--CeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRV---LSKEY--PSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~--~~~~~wl~~---l~~~~--p~~~f~iS 280 (457)
..+..+|++|+|+|+.+...........++.. .+.|+|+|+||+|+... ......+.. +...+ ...+|++|
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~--~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvS 433 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKA--AGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVS 433 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHh--cCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEe
Confidence 45678999999999988654444344444433 47899999999999542 111111111 11111 14578899
Q ss_pred ccCCCChHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQF 297 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~ 297 (457)
|.+|.|+.+|++.|...
T Consensus 434 AktG~GI~eLle~I~~~ 450 (787)
T PRK05306 434 AKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCCCchHHHHhhhhh
Confidence 99999999999988643
No 411
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.70 E-value=0.00022 Score=67.39 Aligned_cols=106 Identities=16% Similarity=0.052 Sum_probs=61.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcC----CcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT----KRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~----~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||+|+|.+.......+....+......... -.+.++||+|...-. ....++.++..+
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~ 85 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVY 85 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEE
Confidence 78999999999999999999987654322211111222222122 247899999986531 123445555433
Q ss_pred ccc--CCcccHHHHHHHHHHhcC---cceehhhcCCCCCC
Q 012726 378 VRV--TNLEDAAEHIGEVLKRVK---KEHLKRAYKIKDWV 412 (457)
Q Consensus 378 v~~--~~l~~~~~~i~~~L~~~~---~~~l~~~y~i~~~~ 412 (457)
+.. +...+........+.... .+.+..-+++|-+.
T Consensus 86 d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~ 125 (219)
T COG1100 86 DSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD 125 (219)
T ss_pred ecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence 322 333344444444444433 56777888888433
No 412
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=97.70 E-value=0.00012 Score=78.06 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=74.9
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
.....+||||.-+. -.|+.+++..+|-+|+||||.... ....+..+-.....+-.+|.|+||+|
T Consensus 125 ylLNLIDTPGHvDF--------------s~EVsRslaac~G~lLvVDA~qGv--qAQT~anf~lAfe~~L~iIpVlNKID 188 (650)
T KOG0462|consen 125 YLLNLIDTPGHVDF--------------SGEVSRSLAACDGALLVVDASQGV--QAQTVANFYLAFEAGLAIIPVLNKID 188 (650)
T ss_pred eEEEeecCCCcccc--------------cceehehhhhcCceEEEEEcCcCc--hHHHHHHHHHHHHcCCeEEEeeeccC
Confidence 44457889886432 235667889999999999996543 33444443333234788999999999
Q ss_pred CCC--hhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 255 LVP--AWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 255 Lvp--~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+-. .+..+.-+..+-...+..++.+||+.|+|+.+|+++|-+..|.
T Consensus 189 lp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPp 236 (650)
T KOG0462|consen 189 LPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPP 236 (650)
T ss_pred CCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCC
Confidence 953 2333333333333445778889999999999999998776653
No 413
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.70 E-value=0.0002 Score=66.38 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=59.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|++|+|+|+.++.+ ...+..++.. . ....|+|+|.||+|+.+... .......+........+.+||
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s--~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 144 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQES--FENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSA 144 (188)
T ss_pred HHHccCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeC
Confidence 346789999999999977642 1233344332 1 23578999999999974321 112222233333345678899
Q ss_pred cCCCChHHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~ 299 (457)
+++.|++++++.|.+.+.
T Consensus 145 ~~~~~i~~~f~~l~~~~~ 162 (188)
T cd04125 145 KQSINVEEAFILLVKLII 162 (188)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999888876654
No 414
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=97.69 E-value=0.00012 Score=70.61 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=56.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---H-hcCCCcEEEEeecCCCCCh------------------------hh
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPA------------------------WA 260 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~-~~~~K~vIlVLNKiDLvp~------------------------~~ 260 (457)
.+..+|++|+|+|+.++.+.. .+..++. . ...+.|+|+|.||+||... +.
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~--~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLE--ELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 467899999999998764322 2222222 1 1246789999999999751 12
Q ss_pred HHHHHHHHHhc----------CCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 261 TKGWLRVLSKE----------YPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 261 ~~~wl~~l~~~----------~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
...|.+.+... .....|.+||++|.|+++++..+.+..
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~ 189 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLV 189 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 22333222110 013467889999999999988876554
No 415
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=97.67 E-value=0.00012 Score=69.94 Aligned_cols=92 Identities=22% Similarity=0.210 Sum_probs=61.6
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-c-CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-C-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~-~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
..+.++|++|+|+|+.++.+. ..+.+++.. . . ...++++|.||+|+.+.. ....-...+.+.+....+.+||
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf--~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 148 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESF--EHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA 148 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeC
Confidence 456889999999999876421 233334332 1 1 235678899999997532 2222234444455566788899
Q ss_pred cCCCChHHHHHHHHHHHHhh
Q 012726 282 NKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+++.|++++++.|.+.+...
T Consensus 149 k~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998766543
No 416
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=97.66 E-value=0.00012 Score=70.34 Aligned_cols=87 Identities=9% Similarity=0.071 Sum_probs=58.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHH---HHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
....+|.+|+|+|..++.+. ..+..++ .....+.|+++|.||+||........-+ .+........|.+||+++.
T Consensus 82 ~~~~~~~~ilvfD~~~~~s~--~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~ 158 (219)
T PLN03071 82 YYIHGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNY 158 (219)
T ss_pred HcccccEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCC
Confidence 45789999999999876432 2333333 3334578999999999996433222112 2333344556788999999
Q ss_pred ChHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFA 298 (457)
Q Consensus 286 Gi~~Li~~L~~~~ 298 (457)
|+.++++.|.+.+
T Consensus 159 ~i~~~f~~l~~~~ 171 (219)
T PLN03071 159 NFEKPFLYLARKL 171 (219)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998886554
No 417
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=97.66 E-value=5.8e-05 Score=65.60 Aligned_cols=90 Identities=18% Similarity=0.165 Sum_probs=55.1
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+.+...+...|+++.|.|+..+.......+..... .+.|+++|+||+|+............+........+.+||.
T Consensus 71 ~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~ 147 (161)
T TIGR00231 71 YRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE---SNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAE 147 (161)
T ss_pred HhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc---cCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecC
Confidence 344444555666666666654433222122222221 26899999999999875433334444444434457889999
Q ss_pred CCCChHHHHHHHH
Q 012726 283 KSFGKGSLLSVLR 295 (457)
Q Consensus 283 ~~~Gi~~Li~~L~ 295 (457)
++.|+.++.+.|+
T Consensus 148 ~~~gv~~~~~~l~ 160 (161)
T TIGR00231 148 TGKNIDSAFKIVE 160 (161)
T ss_pred CCCCHHHHHHHhh
Confidence 9999999988875
No 418
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.66 E-value=7.7e-05 Score=71.11 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=44.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||..+ +.......+..+|++|+|+|+..........+.+.+.. .++|+++|+||+|+
T Consensus 72 ~i~iiDtpG~~~--------------f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~D~ 135 (213)
T cd04167 72 LFNIIDTPGHVN--------------FMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL--EGLPIVLVINKIDR 135 (213)
T ss_pred EEEEEECCCCcc--------------hHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECccc
Confidence 345678888643 23345667889999999999987654333333333332 36899999999998
Q ss_pred C
Q 012726 256 V 256 (457)
Q Consensus 256 v 256 (457)
+
T Consensus 136 ~ 136 (213)
T cd04167 136 L 136 (213)
T ss_pred C
Confidence 6
No 419
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=97.66 E-value=0.00019 Score=65.25 Aligned_cols=89 Identities=17% Similarity=0.165 Sum_probs=56.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhHHH-----------HH--HHHHhc-C
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKG-----------WL--RVLSKE-Y 272 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~-----------wl--~~l~~~-~ 272 (457)
.+..+|++++|.|+.++.+.... .+...+....++.|+++|.||+|+.+.+.... |. +.+... .
T Consensus 69 ~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~ 148 (175)
T cd01870 69 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIG 148 (175)
T ss_pred ccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcC
Confidence 45789999999998765321111 12222332235789999999999975432111 11 111122 2
Q ss_pred CeeEEEeeccCCCChHHHHHHHHHH
Q 012726 273 PSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 273 p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
....+.+||+++.|++++++.|.+.
T Consensus 149 ~~~~~~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 149 AFGYMECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred CcEEEEeccccCcCHHHHHHHHHHH
Confidence 3457789999999999999988754
No 420
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=97.66 E-value=0.00012 Score=69.22 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=57.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCCh--------------------hhHHHHHH
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPA--------------------WATKGWLR 266 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~--------------------~~~~~wl~ 266 (457)
.+..+|++|+|.|..++.+.... .+...+....++.|+|+|.||+||... .+...-.+
T Consensus 84 ~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~ 163 (195)
T cd01873 84 AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGR 163 (195)
T ss_pred cCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCHHHHH
Confidence 56899999999999877543221 122334333357899999999998631 11122223
Q ss_pred HHHhcCCeeEEEeeccCCCChHHHHHHHHH
Q 012726 267 VLSKEYPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 267 ~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
.+.+......|-+||+++.|++++.+.+.+
T Consensus 164 ~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 164 AVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred HHHHHhCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 333344455677899999999998877754
No 421
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=97.65 E-value=0.00025 Score=65.40 Aligned_cols=102 Identities=16% Similarity=0.132 Sum_probs=54.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC---CcEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+||||||||..++..... ...+..+.+... .+.++ -.+.++||||--.-. .-..++.++..
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv- 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC- 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEE-EEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE-
Confidence 68999999999999999998864431 111111111111 11222 257899999964221 11346666653
Q ss_pred cccCC---cccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 378 VRVTN---LEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 378 v~~~~---l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
.++.+ +.+........+... ..+.+.+-+++|-
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl 117 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 117 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhh
Confidence 33322 222222122222222 3467778888873
No 422
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=97.64 E-value=0.00025 Score=69.67 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=58.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHH----------hcCCCcEEEEeecCCCCCh-h-hHHHHHHHHHhcCCee
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE----------HCKHKHMILLLNKCDLVPA-W-ATKGWLRVLSKEYPSL 275 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~----------~~~~K~vIlVLNKiDLvp~-~-~~~~wl~~l~~~~p~~ 275 (457)
.+..+|++|+|+|+.++.+... ..+.+.+.. ...+.|+|+|.||+||... . ......+.+.......
T Consensus 68 ~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 68 SILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred HhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 3568999999999976532111 112222221 1246899999999999742 1 1122223333233456
Q ss_pred EEEeeccCCCChHHHHHHHHHHHH
Q 012726 276 AFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 276 ~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.+.+||+++.|+++|++.|.+.+.
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhc
Confidence 788999999999999999987664
No 423
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=97.64 E-value=0.0003 Score=63.72 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=55.1
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhcC-CeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKEY-PSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~-p~~~f~ 278 (457)
..+..+|++++|.|..++.+.. .+..++. .. ..+.|+++|.||+|+.+......-.+.+.+.+ ....+.
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e 150 (170)
T cd04116 73 PFYRGSDCCLLTFAVDDSQSFQ--NLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFE 150 (170)
T ss_pred HHhcCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEE
Confidence 3567899999999987664321 2222222 11 13579999999999974332222222232333 345688
Q ss_pred eeccCCCChHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~ 296 (457)
+||+++.|+.++++.+.+
T Consensus 151 ~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 151 TSAKDATNVAAAFEEAVR 168 (170)
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 899999999998887753
No 424
>PTZ00369 Ras-like protein; Provisional
Probab=97.64 E-value=0.00018 Score=67.09 Aligned_cols=89 Identities=17% Similarity=0.160 Sum_probs=57.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERH---LKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++|+|+|+.++.+. ..+..+ +... ..+.|+|+|.||+|+.+... .......+.+.+....|.+||.
T Consensus 73 ~~~~~d~iilv~D~s~~~s~--~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak 150 (189)
T PTZ00369 73 YMRTGQGFLCVYSITSRSSF--EEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAK 150 (189)
T ss_pred HhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCC
Confidence 45689999999999776431 122222 2221 23679999999999864321 1112222233334457889999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+.++++.|.+.+.
T Consensus 151 ~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 151 QRVNVDEAFYELVREIR 167 (189)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999998888865543
No 425
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=97.64 E-value=0.00019 Score=78.95 Aligned_cols=87 Identities=22% Similarity=0.188 Sum_probs=57.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh--hhHHHHHHHH---HhcC--CeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA--WATKGWLRVL---SKEY--PSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~--~~~~~wl~~l---~~~~--p~~~f~iS 280 (457)
..+..+|++++|+|+.+............+.. .+.|+|+++||+|+... +....++..+ ...+ ...++++|
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~--~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iS 231 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKA--ANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVS 231 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEE
Confidence 45688999999999987654433333333332 47899999999999532 2222222211 1111 24578899
Q ss_pred ccCCCChHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQ 296 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~ 296 (457)
|++|.|+++|++.|..
T Consensus 232 AktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 232 ALTGDGIDELLDMILL 247 (587)
T ss_pred CCCCCChHHHHHhhhh
Confidence 9999999999988854
No 426
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.63 E-value=0.00027 Score=67.25 Aligned_cols=91 Identities=12% Similarity=0.078 Sum_probs=58.9
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChhh-HHHHHHHHHhc-CCeeEEEeeccC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKE-YPSLAFHASINK 283 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~-~p~~~f~iSa~~ 283 (457)
..+..+|++|+|+|+.++.+... ..+.+.+... ..+.|+|+|.||+||..... ...-.+.+.+. .....|.+||++
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 45779999999999987754221 1122233322 24689999999999964322 12222233323 234577889999
Q ss_pred CCChHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFA 298 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~ 298 (457)
|.|++++++.|.+.+
T Consensus 148 g~gV~e~F~~l~~~~ 162 (202)
T cd04120 148 NFNVDEIFLKLVDDI 162 (202)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988876654
No 427
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.62 E-value=0.00035 Score=63.73 Aligned_cols=86 Identities=21% Similarity=0.136 Sum_probs=55.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h--cCCCcEEEEeecCCCCChhhHHHHHHHHH-----h--cCCee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAWATKGWLRVLS-----K--EYPSL 275 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~--~~~K~vIlVLNKiDLvp~~~~~~wl~~l~-----~--~~p~~ 275 (457)
..+.++|++++|+|+.++.. ...+..++.. . ..++|+++|+||+|+..........+.+. + ..+..
T Consensus 62 ~~~~~a~~ii~V~D~s~~~s--~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~ 139 (167)
T cd04161 62 NYYAEAHGLVFVVDSSDDDR--VQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCH 139 (167)
T ss_pred HHHcCCCEEEEEEECCchhH--HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEE
Confidence 46789999999999987642 1222223321 1 14789999999999965432333333321 1 12456
Q ss_pred EEEeeccCC------CChHHHHHHHH
Q 012726 276 AFHASINKS------FGKGSLLSVLR 295 (457)
Q Consensus 276 ~f~iSa~~~------~Gi~~Li~~L~ 295 (457)
++.+||.+| .|+.+-+++|.
T Consensus 140 ~~~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 140 IEPCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred EEEeEceeCCCCccccCHHHHHHHHh
Confidence 777899998 78888887774
No 428
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=97.62 E-value=0.00026 Score=67.35 Aligned_cols=88 Identities=10% Similarity=0.089 Sum_probs=59.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+|++|+|+|+.++.+. ..+..+ +....++.|+|+|.||+||....+...-.+ +........|.+||+.+
T Consensus 63 ~~~~~ad~~ilV~D~t~~~S~--~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~-~~~~~~~~~~e~SAk~~ 139 (200)
T smart00176 63 GYYIQGQCAIIMFDVTARVTY--KNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSIT-FHRKKNLQYYDISAKSN 139 (200)
T ss_pred HHhcCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHH-HHHHcCCEEEEEeCCCC
Confidence 356789999999999876432 223333 333335789999999999864322222122 22334556778899999
Q ss_pred CChHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFA 298 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~ 298 (457)
.|+.++++.|.+.+
T Consensus 140 ~~v~~~F~~l~~~i 153 (200)
T smart00176 140 YNFEKPFLWLARKL 153 (200)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987655
No 429
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.62 E-value=6.4e-05 Score=78.87 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=81.0
Q ss_pred hHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcC
Q 012726 163 SQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK 242 (457)
Q Consensus 163 ~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~ 242 (457)
|+-.|.....+.++..+.||||.-+... |+.+++..|.-.|+||||.... ....+...-.....
T Consensus 64 v~l~Yk~~~g~~Y~lnlIDTPGHVDFsY--------------EVSRSLAACEGalLvVDAsQGv--eAQTlAN~YlAle~ 127 (603)
T COG0481 64 VRLNYKAKDGETYVLNLIDTPGHVDFSY--------------EVSRSLAACEGALLVVDASQGV--EAQTLANVYLALEN 127 (603)
T ss_pred EEEEEEeCCCCEEEEEEcCCCCccceEE--------------EehhhHhhCCCcEEEEECccch--HHHHHHHHHHHHHc
Confidence 4444655555667777899998654332 2445778889999999996544 33444443222234
Q ss_pred CCcEEEEeecCCCCChhhHHHHHHHHHhc---CCeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 243 HKHMILLLNKCDLVPAWATKGWLRVLSKE---YPSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 243 ~K~vIlVLNKiDLvp~~~~~~wl~~l~~~---~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+-.+|-|+||+||-.. ..++..+.+... -...++.+||++|.|++++++.|.+..|..
T Consensus 128 ~LeIiPViNKIDLP~A-dpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P 188 (603)
T COG0481 128 NLEIIPVLNKIDLPAA-DPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPP 188 (603)
T ss_pred CcEEEEeeecccCCCC-CHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCC
Confidence 7788999999999432 223333333332 235677889999999999999999887754
No 430
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=97.61 E-value=0.00024 Score=64.36 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=55.7
Q ss_pred HHhhhccCEEEEEeeCCCCCCCC--CHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcC----CeeEEEe
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTR--CHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAFHA 279 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~--~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~----p~~~f~i 279 (457)
...+..+|++++|+|+.++.... ...+...+.. ...+.|+++++||+|+..........+.+.-.. ...++.+
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEe
Confidence 34568899999999997643110 0111122211 113689999999999976443333433332111 1245678
Q ss_pred eccCCCChHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLR 295 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~ 295 (457)
||+++.|++++++.|.
T Consensus 156 Sa~~~~gi~~~~~~l~ 171 (173)
T cd04155 156 SAKTGEGLQEGMNWVC 171 (173)
T ss_pred ECCCCCCHHHHHHHHh
Confidence 9999999999988874
No 431
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.61 E-value=0.0002 Score=66.59 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=60.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChh-----------hHHHHHHHHHhcCCe-
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAW-----------ATKGWLRVLSKEYPS- 274 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~-----------~~~~wl~~l~~~~p~- 274 (457)
.+..+|.+|+|.|..++.+.... .+...+....++.|+|||.||+||.+.. +...-.+.+.+.+..
T Consensus 69 ~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 148 (176)
T cd04133 69 SYRGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAA 148 (176)
T ss_pred hcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCC
Confidence 56799999999999877653221 1222233334578999999999996532 222223334444444
Q ss_pred eEEEeeccCCCChHHHHHHHHHHH
Q 012726 275 LAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 275 ~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
..|.+||+++.|++++++.+.+.+
T Consensus 149 ~~~E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 149 AYIECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred EEEECCCCcccCHHHHHHHHHHHH
Confidence 467889999999999998887654
No 432
>PRK12739 elongation factor G; Reviewed
Probab=97.60 E-value=0.00017 Score=80.84 Aligned_cols=95 Identities=15% Similarity=0.105 Sum_probs=64.9
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
+..+..++|+||+++ +..++..++..+|++|+|+|+.+........+..++.. .++|.|+++||
T Consensus 71 ~~~~i~liDTPG~~~--------------f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~--~~~p~iv~iNK 134 (691)
T PRK12739 71 KGHRINIIDTPGHVD--------------FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADK--YGVPRIVFVNK 134 (691)
T ss_pred CCEEEEEEcCCCHHH--------------HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEEC
Confidence 445667899999863 22357888899999999999988876665666666654 37899999999
Q ss_pred CCCCChhhHHHHHHHHHhcCC----eeEEEeeccCC
Q 012726 253 CDLVPAWATKGWLRVLSKEYP----SLAFHASINKS 284 (457)
Q Consensus 253 iDLvp~~~~~~wl~~l~~~~p----~~~f~iSa~~~ 284 (457)
+|+.+.. ....++.+...++ ...+++|+..+
T Consensus 135 ~D~~~~~-~~~~~~~i~~~l~~~~~~~~iPis~~~~ 169 (691)
T PRK12739 135 MDRIGAD-FFRSVEQIKDRLGANAVPIQLPIGAEDD 169 (691)
T ss_pred CCCCCCC-HHHHHHHHHHHhCCCceeEEeccccccc
Confidence 9998643 2334444443321 23445565544
No 433
>PLN03110 Rab GTPase; Provisional
Probab=97.59 E-value=0.00039 Score=66.52 Aligned_cols=92 Identities=14% Similarity=0.042 Sum_probs=63.2
Q ss_pred HHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEee
Q 012726 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 206 l~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iS 280 (457)
....+..+|.+|+|+|+.++.+. ..+..++.. . ..+.|+++|.||+||..... .......+...+....+.+|
T Consensus 78 ~~~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~S 155 (216)
T PLN03110 78 TSAYYRGAVGALLVYDITKRQTF--DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETS 155 (216)
T ss_pred HHHHhCCCCEEEEEEECCChHHH--HHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEe
Confidence 34466789999999999876432 234444432 1 23689999999999964322 22334445455556678889
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~ 299 (457)
|.++.|++++++.|...+.
T Consensus 156 A~~g~~v~~lf~~l~~~i~ 174 (216)
T PLN03110 156 ALEATNVEKAFQTILLEIY 174 (216)
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999988866554
No 434
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.59 E-value=0.00044 Score=76.12 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=58.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhH------------------H-------
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT------------------K------- 262 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~------------------~------- 262 (457)
..+..+|++++|+|+.+.+..........+.. .+.|+++++||+|+.+.+.. .
T Consensus 90 ~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~~l~ 167 (586)
T PRK04004 90 RGGALADIAILVVDINEGFQPQTIEAINILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEEKLY 167 (586)
T ss_pred HhHhhCCEEEEEEECCCCCCHhHHHHHHHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHHHHH
Confidence 35678999999999987654444444455543 47899999999999753320 0
Q ss_pred HHHHHHHhc--------------CCeeEEEeeccCCCChHHHHHHHHH
Q 012726 263 GWLRVLSKE--------------YPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 263 ~wl~~l~~~--------------~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
....+|... ....++++||.++.|+++|++.+..
T Consensus 168 ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 168 ELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 011122211 1145788999999999998888754
No 435
>KOG1249 consensus Predicted GTPases [General function prediction only]
Probab=97.59 E-value=7.2e-05 Score=79.44 Aligned_cols=117 Identities=21% Similarity=0.196 Sum_probs=75.4
Q ss_pred CcEEEEeecCCCCChhhHH----HHHHHHHhcC---C-eeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEeecC
Q 012726 244 KHMILLLNKCDLVPAWATK----GWLRVLSKEY---P-SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYP 315 (457)
Q Consensus 244 K~vIlVLNKiDLvp~~~~~----~wl~~l~~~~---p-~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~p 315 (457)
..++.+.+++|+.+..... .|.-...+.+ . ..+..+|+.+.+|..+|+...... ++....|+.||.+
T Consensus 244 p~lVd~aT~~dwpgTtlsllkfpv~~p~~~r~~~r~krl~~~~~~akk~~g~r~l~~~~~~~-----ag~~~~v~~vg~t 318 (572)
T KOG1249|consen 244 PKLVDRATISDWPGTTLSLLKFPVLVPHPYRLGGRRKRLGVHSVSAKKDMGERDLLALETGD-----AGKAGPVAAVGRT 318 (572)
T ss_pred cceeeeeecccCCccccchhhCccccccchhhccchhhhhhhhhhhHhhhhHHHHHHhhhhc-----cccccchHHhhhh
Confidence 4678899999997653211 1211111111 0 122334677777776666554322 3567789999999
Q ss_pred CCchHHHHHHHhCCC-----CceecCCCCceeEEEEEE--cCCcEEEEecCCcccCC
Q 012726 316 NVGKSSVINTLRTKN-----VCKVAPIPGETKVWQYIT--LTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 316 NvGKSSliN~L~~~~-----~~~vs~~pg~T~~~~~~~--~~~~i~liDtPGi~~~~ 365 (457)
+.|++++||++-..- ...-++.||+|.....+. +...-.++||||++.+.
T Consensus 319 ~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~~~~w~YDTPG~~~~~ 375 (572)
T KOG1249|consen 319 FAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFKRGAWLYDTPGVLNPN 375 (572)
T ss_pred hhccchhhhhhhhhhccchhccccCCCCcccccceeeeccccccceeecCCCccChh
Confidence 999999999997322 234678999997544333 45566899999999875
No 436
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.58 E-value=0.00084 Score=62.34 Aligned_cols=120 Identities=16% Similarity=0.164 Sum_probs=65.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE-EEEEcCC---cEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW-QYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~-~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||++.+.+.... ....|...... ..+.++. .+.|+||||--... .-..++.++...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYP-ETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-CCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 57999999999999999999875431 11122111111 1222322 57899999963221 113556665532
Q ss_pred cc--cCCcccH-HHHHHHHHHhc-CcceehhhcCCCCCC---------------CHHHHHHHHHHHcCC
Q 012726 378 VR--VTNLEDA-AEHIGEVLKRV-KKEHLKRAYKIKDWV---------------DENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~--~~~l~~~-~~~i~~~L~~~-~~~~l~~~y~i~~~~---------------~~~efL~~la~r~g~ 427 (457)
+- .+.+... ...+..+...+ ..+.+.+-++.|-.. -..+-.+.+|++.|.
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~ 149 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGA 149 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCC
Confidence 22 2223222 22233332222 235677778887321 123456778888885
No 437
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.00068 Score=70.87 Aligned_cols=108 Identities=17% Similarity=0.120 Sum_probs=73.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
-+.|+|.||.++ ....+...+..+|..++|||+.+.+....-+-...|.. -.-++.|+|+||+|+
T Consensus 51 ~~~fIDvpgh~~--------------~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~iLdl-lgi~~giivltk~D~ 115 (447)
T COG3276 51 VMGFIDVPGHPD--------------FISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLILDL-LGIKNGIIVLTKADR 115 (447)
T ss_pred ceEEeeCCCcHH--------------HHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHHHHh-cCCCceEEEEecccc
Confidence 345677777753 34445567788999999999965554433322222322 234666999999999
Q ss_pred CChhhHHHHHHHHHhcC--C-eeEEEeeccCCCChHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEY--P-SLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~--p-~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
++...++..++.+.... + ..+|+.|+..+.|+++|.+.|.+++
T Consensus 116 ~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 116 VDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred ccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhh
Confidence 98765554444443332 2 4568899999999999999999988
No 438
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=97.58 E-value=0.00014 Score=67.33 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=58.3
Q ss_pred hhhccCEEEEEeeCCCCCC--CCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHH-----hcCCeeEEEee
Q 012726 209 VIDSSDVVVQVLDARDPQG--TRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHAS 280 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~--s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~-----~~~p~~~f~iS 280 (457)
....+|.||+|+|+.++.. ..-..+.+.+.. ...++|+++++||.|+............+. ...+..++.+|
T Consensus 78 y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 78 YFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp GHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred eccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeee
Confidence 4568899999999987531 111122233322 124789999999999865332233333332 12456788899
Q ss_pred ccCCCChHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQF 297 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~ 297 (457)
|.+|.|+.+.++.|.+.
T Consensus 158 a~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp TTTTBTHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhc
Confidence 99999999999888753
No 439
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=97.57 E-value=0.00021 Score=64.92 Aligned_cols=88 Identities=17% Similarity=0.071 Sum_probs=56.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhH-------------HHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~-------------~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|..++-+.... .+...+....++.|+++|.||+||.+.... ......+.+...
T Consensus 68 ~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (174)
T cd04135 68 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIG 147 (174)
T ss_pred cCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 35788999999999776432111 123334333468999999999999653211 111222222233
Q ss_pred -eeEEEeeccCCCChHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
...|.+||+++.|++++++.+.+
T Consensus 148 ~~~~~e~Sa~~~~gi~~~f~~~~~ 171 (174)
T cd04135 148 AHCYVECSALTQKGLKTVFDEAIL 171 (174)
T ss_pred CCEEEEecCCcCCCHHHHHHHHHH
Confidence 35678899999999999887754
No 440
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00048 Score=73.50 Aligned_cols=85 Identities=19% Similarity=0.177 Sum_probs=61.2
Q ss_pred hccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhc------C--CeeEEEeecc
Q 012726 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------Y--PSLAFHASIN 282 (457)
Q Consensus 211 ~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~------~--p~~~f~iSa~ 282 (457)
+-+|++++|+|+.|..-....+-.++++. .+.|+|+.+||+|..+.. .......+.+. + .+..+++||+
T Consensus 77 ~vtDIaILVVa~dDGv~pQTiEAI~hak~--a~vP~iVAiNKiDk~~~n-p~~v~~el~~~gl~~E~~gg~v~~VpvSA~ 153 (509)
T COG0532 77 SVTDIAILVVAADDGVMPQTIEAINHAKA--AGVPIVVAINKIDKPEAN-PDKVKQELQEYGLVPEEWGGDVIFVPVSAK 153 (509)
T ss_pred ccccEEEEEEEccCCcchhHHHHHHHHHH--CCCCEEEEEecccCCCCC-HHHHHHHHHHcCCCHhhcCCceEEEEeecc
Confidence 56799999999988876655555556554 589999999999997432 12222222222 1 2678899999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
+|+|+++|+..|.-.+
T Consensus 154 tg~Gi~eLL~~ill~a 169 (509)
T COG0532 154 TGEGIDELLELILLLA 169 (509)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999998886544
No 441
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=97.56 E-value=0.00037 Score=62.34 Aligned_cols=119 Identities=17% Similarity=0.147 Sum_probs=66.5
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEEec-
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLKGV- 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~gv- 377 (457)
+|+++|.++||||||++.+.+..... ..+..|.......+.... .+.|+|+||-..... -..++.++...
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 58999999999999999999755321 222223332222333322 589999999643211 13456555422
Q ss_pred -cccCCcccHHHHHHHHHHhcC--cceehhhcCCCCCC---CHHHHHHHHHHHcC
Q 012726 378 -VRVTNLEDAAEHIGEVLKRVK--KEHLKRAYKIKDWV---DENDFLLQLCKSTG 426 (457)
Q Consensus 378 -v~~~~l~~~~~~i~~~L~~~~--~~~l~~~y~i~~~~---~~~efL~~la~r~g 426 (457)
...+.+......+..+..... .+.+..-++.|-.+ =..+-...+|++.|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~ 135 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELG 135 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhC
Confidence 222333334444444444444 46666777776321 12234567777776
No 442
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=97.56 E-value=0.00026 Score=66.04 Aligned_cols=90 Identities=19% Similarity=0.271 Sum_probs=57.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhHHH--------------HHHHHHhcC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKG--------------WLRVLSKEY 272 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~--------------wl~~l~~~~ 272 (457)
.+..+|++++|.|..++.+.... .+...+....++.|+|+|.||+||........ -.+...+..
T Consensus 68 ~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 147 (189)
T cd04134 68 SYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN 147 (189)
T ss_pred cccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 35789999999998776533211 12233333345789999999999965321110 111111222
Q ss_pred CeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 273 PSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 273 p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
....|.+||+++.|++++++.|.+.+
T Consensus 148 ~~~~~e~SAk~~~~v~e~f~~l~~~~ 173 (189)
T cd04134 148 ALRYLECSAKLNRGVNEAFTEAARVA 173 (189)
T ss_pred CCEEEEccCCcCCCHHHHHHHHHHHH
Confidence 24567889999999999998887665
No 443
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.56 E-value=0.00038 Score=67.84 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=58.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCCh-------------hhHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~-------------~~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|.|..++.+... ..+...+....++.|+|||.||+||... .+...-.+.+.+...
T Consensus 81 ~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~ 160 (232)
T cd04174 81 CYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLG 160 (232)
T ss_pred HcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcC
Confidence 5689999999999987754321 1223334443467899999999998531 111122233344444
Q ss_pred e-eEEEeeccCCC-ChHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSF-GKGSLLSVLRQFA 298 (457)
Q Consensus 274 ~-~~f~iSa~~~~-Gi~~Li~~L~~~~ 298 (457)
. ..|.+||+++. |++++...+...+
T Consensus 161 ~~~~~EtSAktg~~~V~e~F~~~~~~~ 187 (232)
T cd04174 161 AEVYLECSAFTSEKSIHSIFRSASLLC 187 (232)
T ss_pred CCEEEEccCCcCCcCHHHHHHHHHHHH
Confidence 4 46788999997 7999888876544
No 444
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.55 E-value=0.00041 Score=64.51 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=53.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE-EEEcC---CcEEEEecCCcccCCC-----CCccceEEE--
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ-YITLT---KRIFLIDCPGVVYQNK-----DSETDIVLK-- 375 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~-~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~-- 375 (457)
.+|+++|.+|+|||||++.|....... ...|....... .+.++ ..+.++||||...... -..++.++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPE-EYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 378999999999999999998433211 11121111111 12222 2468999999643221 134565553
Q ss_pred eccccCCcccHHH-HHHHHHHhc-CcceehhhcCCC
Q 012726 376 GVVRVTNLEDAAE-HIGEVLKRV-KKEHLKRAYKIK 409 (457)
Q Consensus 376 gvv~~~~l~~~~~-~i~~~L~~~-~~~~l~~~y~i~ 409 (457)
.+...+.+.+... ++..+.... ..+.+.+.+|+|
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~D 116 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKD 116 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChh
Confidence 2222222222222 222222222 346777888887
No 445
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.55 E-value=0.00057 Score=69.45 Aligned_cols=115 Identities=20% Similarity=0.204 Sum_probs=73.4
Q ss_pred CCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCH-----HHHHHHHHh---cCCCcEEEE
Q 012726 178 EGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCH-----HLERHLKEH---CKHKHMILL 249 (457)
Q Consensus 178 ~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~-----~l~k~L~~~---~~~K~vIlV 249 (457)
+..|-||+..-+.+ -.|--.+ ..+-|+++-++++|+|+.. ...+++ .|...|.+. -.+||.|+|
T Consensus 210 v~ADIPGLIEGAs~---G~GLG~~----FLrHIERt~vL~hviD~s~-~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv 281 (369)
T COG0536 210 VVADIPGLIEGASE---GVGLGLR----FLRHIERTRVLLHVIDLSP-IDGRDPIEDYQTIRNELEKYSPKLAEKPRIVV 281 (369)
T ss_pred EEecCccccccccc---CCCccHH----HHHHHHhhheeEEEEecCc-ccCCCHHHHHHHHHHHHHHhhHHhccCceEEE
Confidence 44566666533322 1222233 3455678889999999853 222222 222233321 247999999
Q ss_pred eecCCC-CChhhHHHHHHHHHhcCCeeEEE-eeccCCCChHHHHHHHHHHHHh
Q 012726 250 LNKCDL-VPAWATKGWLRVLSKEYPSLAFH-ASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 250 LNKiDL-vp~~~~~~wl~~l~~~~p~~~f~-iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+||+|+ .+.+..+...+++.+......+. +|+.++.|++.|+..+.+++..
T Consensus 282 ~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~ 334 (369)
T COG0536 282 LNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEE 334 (369)
T ss_pred EeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHH
Confidence 999994 56667777777777665433333 8999999999999998887754
No 446
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=97.54 E-value=0.0012 Score=61.43 Aligned_cols=119 Identities=15% Similarity=0.092 Sum_probs=65.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
++|+++|.++||||||+..+....... ..+.-|.+... .+.++ -++.++||+|--....- ..++.++. |
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~-~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~il-v 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL-A 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEE-EEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEE-E
Confidence 579999999999999999999755421 12222222111 12222 25789999996443211 34555554 3
Q ss_pred ccc---CCcccH-HHHHHHHHHhc-CcceehhhcCCCCCC-------------CHHHHHHHHHHHcCC
Q 012726 378 VRV---TNLEDA-AEHIGEVLKRV-KKEHLKRAYKIKDWV-------------DENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~---~~l~~~-~~~i~~~L~~~-~~~~l~~~y~i~~~~-------------~~~efL~~la~r~g~ 427 (457)
.++ +.+... ..++..+-... ..+.+.+-+|.|-.+ -..+-...+|+..|.
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 147 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA 147 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC
Confidence 333 233332 12333322211 346777888877322 124456778888775
No 447
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=97.54 E-value=0.00044 Score=64.38 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=63.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKGV 377 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~gv 377 (457)
++|+++|.+|||||||++.++...... ..+.-|.......+.++. .+.++||+|--... .-..++.++..+
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 478999999999999999998754321 222222221112333332 57899999964221 124567777644
Q ss_pred cccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCC-----C---HHHHHHHHHHHcC
Q 012726 378 VRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV-----D---ENDFLLQLCKSTG 426 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~-----~---~~efL~~la~r~g 426 (457)
+..+ .+.+....+..+.... ..+ +.+.+|+|-.. . ..+..+.+|+..|
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~ 140 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK 140 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC
Confidence 3322 1222223333333321 223 55678887421 1 1233455777766
No 448
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.54 E-value=0.00054 Score=68.95 Aligned_cols=91 Identities=24% Similarity=0.257 Sum_probs=61.0
Q ss_pred HHHHHhhhccCEEEEEeeCCCCCCCCCH--H---HHHHHH---HhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCC-e
Q 012726 204 GELYKVIDSSDVVVQVLDARDPQGTRCH--H---LERHLK---EHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYP-S 274 (457)
Q Consensus 204 ~el~k~I~~sDvIL~VvDardp~~s~~~--~---l~k~L~---~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p-~ 274 (457)
-+..+-|+.++++++|+|...+.. +++ + +...|. +.-..+|.++|+||+|+...+ +..++.|.+... .
T Consensus 266 ~~FLrHiER~~~l~fVvD~s~~~~-~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae--~~~l~~L~~~lq~~ 342 (366)
T KOG1489|consen 266 YKFLRHIERCKGLLFVVDLSGKQL-RNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE--KNLLSSLAKRLQNP 342 (366)
T ss_pred HHHHHHHHhhceEEEEEECCCccc-CCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH--HHHHHHHHHHcCCC
Confidence 345667889999999999976632 111 1 111111 112478999999999985322 333444544443 3
Q ss_pred eEEEeeccCCCChHHHHHHHHHH
Q 012726 275 LAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 275 ~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
.+|++||..+.|+..|++.|++.
T Consensus 343 ~V~pvsA~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 343 HVVPVSAKSGEGLEELLNGLREL 365 (366)
T ss_pred cEEEeeeccccchHHHHHHHhhc
Confidence 58899999999999999998753
No 449
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00055 Score=74.69 Aligned_cols=121 Identities=21% Similarity=0.214 Sum_probs=78.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce---------------------ecCCCCc-------ee---------E---
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK---------------------VAPIPGE-------TK---------V--- 343 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~---------------------vs~~pg~-------T~---------~--- 343 (457)
+...+|+|.|.+|.||||+|||++.+++.. +..+||. |. +
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 567899999999999999999998755421 1112330 00 0
Q ss_pred --E--EEEEc--------CCcEEEEecCCcccCCCC--------CccceEEEeccccCCcccHHHHHHHHHHhcCcceeh
Q 012726 344 --W--QYITL--------TKRIFLIDCPGVVYQNKD--------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLK 403 (457)
Q Consensus 344 --~--~~~~~--------~~~i~liDtPGi~~~~~~--------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~ 403 (457)
+ -.+.. ...+.++|.||+-..... .++|+.+.++.+-..++..+.++.....+-++....
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~KpniFI 266 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEEKPNIFI 266 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhccCCcEEE
Confidence 0 01111 135899999999766543 367888886666666666665554444444556666
Q ss_pred hhcCCCCCCCHHHHHHHHHHH
Q 012726 404 RAYKIKDWVDENDFLLQLCKS 424 (457)
Q Consensus 404 ~~y~i~~~~~~~efL~~la~r 424 (457)
..+++|.-.+..++.+.+.++
T Consensus 267 lnnkwDasase~ec~e~V~~Q 287 (749)
T KOG0448|consen 267 LNNKWDASASEPECKEDVLKQ 287 (749)
T ss_pred EechhhhhcccHHHHHHHHHH
Confidence 677788777777777777666
No 450
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.53 E-value=0.00027 Score=69.29 Aligned_cols=60 Identities=37% Similarity=0.516 Sum_probs=46.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EE-EcCCcEEEEecCCcccCCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YI-TLTKRIFLIDCPGVVYQNKD 367 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~-~~~~~i~liDtPGi~~~~~~ 367 (457)
-+|+++|+|.|||||+++-|.+... .|+..-++|-... .+ .-+.++.|.|.||++....+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakd 122 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD 122 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccccceeeecCcchhccccc
Confidence 3799999999999999999998654 6666667664322 22 23568999999999987655
No 451
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.52 E-value=0.00038 Score=75.66 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=48.6
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
+..+..+.|+||.. .+..+++.++..+|.+|+|+|+.+........+.+.+.. .+.|+|+++||
T Consensus 78 ~~~~inliDTPG~~--------------df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~~PiivviNK 141 (527)
T TIGR00503 78 RDCLVNLLDTPGHE--------------DFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL--RDTPIFTFMNK 141 (527)
T ss_pred CCeEEEEEECCChh--------------hHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh--cCCCEEEEEEC
Confidence 34556678888874 234567778899999999999987654333344444433 47899999999
Q ss_pred CCCC
Q 012726 253 CDLV 256 (457)
Q Consensus 253 iDLv 256 (457)
+|+.
T Consensus 142 iD~~ 145 (527)
T TIGR00503 142 LDRD 145 (527)
T ss_pred cccc
Confidence 9985
No 452
>PRK00007 elongation factor G; Reviewed
Probab=97.52 E-value=0.00027 Score=79.28 Aligned_cols=94 Identities=15% Similarity=0.098 Sum_probs=65.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..++|+||+.+ +..++..++..+|++|+|+||..........+..++.+. ++|.|+++||+
T Consensus 74 ~~~~~liDTPG~~~--------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~--~~p~iv~vNK~ 137 (693)
T PRK00007 74 DHRINIIDTPGHVD--------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKY--KVPRIAFVNKM 137 (693)
T ss_pred CeEEEEEeCCCcHH--------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHc--CCCEEEEEECC
Confidence 44566889999753 223578889999999999999888877777777777653 78999999999
Q ss_pred CCCChhhHHHHHHHHHhcCC----eeEEEeeccCC
Q 012726 254 DLVPAWATKGWLRVLSKEYP----SLAFHASINKS 284 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~~~p----~~~f~iSa~~~ 284 (457)
|+.+.. ....++.+.+.++ ...+++|+..+
T Consensus 138 D~~~~~-~~~~~~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 138 DRTGAD-FYRVVEQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred CCCCCC-HHHHHHHHHHHhCCCeeeEEecCccCCc
Confidence 998643 3334444444332 23345565544
No 453
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.50 E-value=0.00031 Score=65.78 Aligned_cols=90 Identities=14% Similarity=0.117 Sum_probs=58.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhh-------------HHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA-------------TKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-------------~~~wl~~l~~~~p 273 (457)
.+..+|++|+|.|..++.+-..- .+...+....++.|+|+|.||+||..... .....+.+.+...
T Consensus 71 ~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 150 (191)
T cd01875 71 SYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIH 150 (191)
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcC
Confidence 45789999999999877542211 11222332335789999999999964321 1112223333333
Q ss_pred -eeEEEeeccCCCChHHHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
...|.+||+.+.|+.++++.|.+.+
T Consensus 151 ~~~~~e~SAk~g~~v~e~f~~l~~~~ 176 (191)
T cd01875 151 AVKYLECSALNQDGVKEVFAEAVRAV 176 (191)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 4677889999999999998887654
No 454
>PLN00023 GTP-binding protein; Provisional
Probab=97.49 E-value=0.0017 Score=66.38 Aligned_cols=124 Identities=19% Similarity=0.051 Sum_probs=74.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC----------------CcEEEEecCCcccCC--
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT----------------KRIFLIDCPGVVYQN-- 365 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~----------------~~i~liDtPGi~~~~-- 365 (457)
..++|+++|..+|||||||+.+++.... ...+.-|.+.....+.++ -.+.|+||+|--...
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 4689999999999999999999975432 223334444322223322 137899999963321
Q ss_pred ---CCCccceEEEeccccCC---cccHHHHHHHHHHhc--------------CcceehhhcCCCCCC---------CHHH
Q 012726 366 ---KDSETDIVLKGVVRVTN---LEDAAEHIGEVLKRV--------------KKEHLKRAYKIKDWV---------DEND 416 (457)
Q Consensus 366 ---~~~e~dlvL~gvv~~~~---l~~~~~~i~~~L~~~--------------~~~~l~~~y~i~~~~---------~~~e 416 (457)
.-..++.++.+ .++.+ +.+....+..+.... ..+.+++-||+|-.. ...+
T Consensus 100 ~~~yyr~AdgiILV-yDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 100 RSLFYSQINGVIFV-HDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hHHhccCCCEEEEE-EeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 11356666653 33322 222223333333321 135788889988321 2467
Q ss_pred HHHHHHHHcCCcc
Q 012726 417 FLLQLCKSTGKLL 429 (457)
Q Consensus 417 fL~~la~r~g~l~ 429 (457)
..+..|.+.|++-
T Consensus 179 ~a~~~A~~~g~l~ 191 (334)
T PLN00023 179 AARQWVEKQGLLP 191 (334)
T ss_pred HHHHHHHHcCCCc
Confidence 8899999999874
No 455
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=97.49 E-value=0.00026 Score=64.47 Aligned_cols=86 Identities=20% Similarity=0.215 Sum_probs=53.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hcCCCcEEEEeecCCCCChhhHHHHH-----HHHHhcCCeeEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWATKGWL-----RVLSKEYPSLAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~~~K~vIlVLNKiDLvp~~~~~~wl-----~~l~~~~p~~~f~i 279 (457)
..+..+|++|+|+|+.++... ..+..++.. ..++.|+++|.||+|+.......... ..+.+......|.+
T Consensus 63 ~~~~~ad~ii~V~D~t~~~s~--~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 140 (164)
T cd04162 63 RYLSGSQGLIFVVDSADSERL--PLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGT 140 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEe
Confidence 457899999999999876521 122222222 13579999999999986543322222 22223334455666
Q ss_pred eccC------CCChHHHHHHHH
Q 012726 280 SINK------SFGKGSLLSVLR 295 (457)
Q Consensus 280 Sa~~------~~Gi~~Li~~L~ 295 (457)
||.. ++|+.++++.|-
T Consensus 141 Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 141 SLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred eecCCCChhHHHHHHHHHHHHh
Confidence 7666 888888777653
No 456
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.49 E-value=0.00028 Score=64.11 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=57.2
Q ss_pred hhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc--CCCcEEEEeecCCCC---ChhhHHHHHHHHHhcC-CeeEEEeecc
Q 012726 210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLV---PAWATKGWLRVLSKEY-PSLAFHASIN 282 (457)
Q Consensus 210 I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~--~~K~vIlVLNKiDLv---p~~~~~~wl~~l~~~~-p~~~f~iSa~ 282 (457)
...+|++++|.|..++.+-.. ..+...+.... ++.|+++|.||+||. +..+.....+.+.+.. ....|.+||+
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 142 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCAT 142 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecC
Confidence 467899999999987754322 22222333221 457999999999984 2223333334444333 4667888999
Q ss_pred CCCChHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQ 296 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~ 296 (457)
++.|+++++..+.+
T Consensus 143 ~~~~i~~~f~~~~~ 156 (158)
T cd04103 143 YGLNVERVFQEAAQ 156 (158)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999887753
No 457
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.47 E-value=0.0014 Score=61.30 Aligned_cols=121 Identities=17% Similarity=0.197 Sum_probs=66.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~ 375 (457)
..++|+++|-++||||||++.+....... ..|..+.... ..+.++. .+.|+||+|--... .-..++.++.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 35789999999999999999998754321 1122121111 1223332 57899999963211 1135666665
Q ss_pred eccccCCc---ccH-HHHHHHHHHhc-CcceehhhcCCCCCC---------------CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNL---EDA-AEHIGEVLKRV-KKEHLKRAYKIKDWV---------------DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l---~~~-~~~i~~~L~~~-~~~~l~~~y~i~~~~---------------~~~efL~~la~r~g~ 427 (457)
|.++.+. ... ...+..+-... ..+.+++-++.|-.+ -..+-.+.+|++.|.
T Consensus 83 -vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~ 153 (182)
T cd04172 83 -CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGA 153 (182)
T ss_pred -EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCC
Confidence 3333332 222 12222222211 246777888887321 123346778888885
No 458
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=97.46 E-value=0.00021 Score=75.33 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=63.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCc--eecCCCCceeEEEE----------------EE-------------cCCc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVC--KVAPIPGETKVWQY----------------IT-------------LTKR 352 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~--~vs~~pg~T~~~~~----------------~~-------------~~~~ 352 (457)
++.++|+++|..++|||||+.+|.+.... .-.-..|.|....+ +. ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 56799999999999999999999763110 00012344443211 00 0136
Q ss_pred EEEEecCCcccCC-----CCCccceEEEeccccCCc-ccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 353 IFLIDCPGVVYQN-----KDSETDIVLKGVVRVTNL-EDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 353 i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~l-~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
+.|+||||-.... ....+|.++..++..+.. ..........+...+ ++.+.+.||+|..
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~ 152 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV 152 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence 8999999953221 113457777766655443 232233334555554 3578888999854
No 459
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.45 E-value=0.00042 Score=64.38 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=57.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCCh-------------hhHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~-------------~~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|.|..++.+-.. ..+...+....++.|+|+|.||+||.+. .+...-.+.+.+.+.
T Consensus 69 ~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~ 148 (178)
T cd04131 69 CYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLG 148 (178)
T ss_pred hcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhC
Confidence 4678999999999987654321 1222333344467899999999999541 122222334444444
Q ss_pred e-eEEEeeccCCCC-hHHHHHHHHH
Q 012726 274 S-LAFHASINKSFG-KGSLLSVLRQ 296 (457)
Q Consensus 274 ~-~~f~iSa~~~~G-i~~Li~~L~~ 296 (457)
. ..|.+||+++.+ +.++...+..
T Consensus 149 ~~~~~E~SA~~~~~~v~~~F~~~~~ 173 (178)
T cd04131 149 AEIYLECSAFTSEKSVRDIFHVATM 173 (178)
T ss_pred CCEEEECccCcCCcCHHHHHHHHHH
Confidence 3 567889999995 9998877765
No 460
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.45 E-value=0.00041 Score=75.38 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=47.4
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
.....+.|+||..+ +..+++.++..+|.+|+|+|+.+........+.+.... .+.|+|+++||+
T Consensus 78 ~~~inliDTPG~~d--------------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~--~~iPiiv~iNK~ 141 (526)
T PRK00741 78 DCLINLLDTPGHED--------------FSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRL--RDTPIFTFINKL 141 (526)
T ss_pred CEEEEEEECCCchh--------------hHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHh--cCCCEEEEEECC
Confidence 34455688888643 22346677889999999999987654433344444433 479999999999
Q ss_pred CCCC
Q 012726 254 DLVP 257 (457)
Q Consensus 254 DLvp 257 (457)
|+..
T Consensus 142 D~~~ 145 (526)
T PRK00741 142 DRDG 145 (526)
T ss_pred cccc
Confidence 9863
No 461
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=97.45 E-value=0.0008 Score=61.24 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHH---HHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
..+..+|++++|+|+.++.+.. .+..++ ... ..+.|+|+|.||+|+.... ......+.+.+.+....+.+||
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (170)
T cd04115 71 HYYRNVHAVVFVYDVTNMASFH--SLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSA 148 (170)
T ss_pred HhhcCCCEEEEEEECCCHHHHH--hHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEec
Confidence 3467899999999997764322 233333 221 2468999999999986432 2223334444444455677899
Q ss_pred cC---CCChHHHHHHHHH
Q 012726 282 NK---SFGKGSLLSVLRQ 296 (457)
Q Consensus 282 ~~---~~Gi~~Li~~L~~ 296 (457)
++ +.++.+++..|.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~ 166 (170)
T cd04115 149 KDPSENDHVEAIFMTLAH 166 (170)
T ss_pred cCCcCCCCHHHHHHHHHH
Confidence 98 6667766666543
No 462
>PLN03108 Rab family protein; Provisional
Probab=97.44 E-value=0.00073 Score=64.30 Aligned_cols=88 Identities=17% Similarity=0.140 Sum_probs=56.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---H-hcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~-~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|.+|+|+|+.++.+. ..+.+++. . ..++.|+++|.||+||.... ......+.+.+.+....+.+||+
T Consensus 74 ~~~~~ad~~vlv~D~~~~~s~--~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (210)
T PLN03108 74 SYYRGAAGALLVYDITRRETF--NHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (210)
T ss_pred HHhccCCEEEEEEECCcHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 455689999999999765422 22333332 1 12468999999999996532 11222333334444567888999
Q ss_pred CCCChHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQF 297 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~ 297 (457)
++.|++++++.+...
T Consensus 152 ~~~~v~e~f~~l~~~ 166 (210)
T PLN03108 152 TAQNVEEAFIKTAAK 166 (210)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999999977655443
No 463
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=97.44 E-value=0.00075 Score=71.92 Aligned_cols=106 Identities=18% Similarity=0.065 Sum_probs=65.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCC-------CCCHHHHHHHHHhcCCCc-EE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MI 247 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~-------s~~~~l~k~L~~~~~~K~-vI 247 (457)
...++|+||.. .+..++...+..+|++|+|+||..... ....+...++.. .+.| +|
T Consensus 86 ~i~lIDtPGh~--------------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~ii 149 (446)
T PTZ00141 86 YFTIIDAPGHR--------------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMI 149 (446)
T ss_pred EEEEEECCChH--------------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEE
Confidence 44578888853 445667778899999999999987642 122222333332 2555 67
Q ss_pred EEeecCCC--CC--hhhH----HHHHHHHHhc-C---CeeEEEeeccCCCChH------------HHHHHHHHH
Q 012726 248 LLLNKCDL--VP--AWAT----KGWLRVLSKE-Y---PSLAFHASINKSFGKG------------SLLSVLRQF 297 (457)
Q Consensus 248 lVLNKiDL--vp--~~~~----~~wl~~l~~~-~---p~~~f~iSa~~~~Gi~------------~Li~~L~~~ 297 (457)
+++||+|+ ++ +... ....+.|... + ...++++|+.+|.|+. .|++.|..+
T Consensus 150 v~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~~~ 223 (446)
T PTZ00141 150 VCINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALDTL 223 (446)
T ss_pred EEEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCcccCCCCCcccchHHHHHHHhCC
Confidence 89999994 32 2222 2222333322 2 2457889999999885 377777654
No 464
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=97.43 E-value=0.0013 Score=63.58 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC--cEEEEecCCcccCCCC-----CccceEEEec
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK--RIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~--~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
.++|++||.+||||||||+.+...... ...|..+..-......-+. .+.|+||+|-.....- ..+|+++. |
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~ill-v 79 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLI-C 79 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEE-E
Q ss_pred cccCCcccHHHHHHHHHHhc-----CcceehhhcCCCCCCC---------------HHHHHHHHHHHcCC
Q 012726 378 VRVTNLEDAAEHIGEVLKRV-----KKEHLKRAYKIKDWVD---------------ENDFLLQLCKSTGK 427 (457)
Q Consensus 378 v~~~~l~~~~~~i~~~L~~~-----~~~~l~~~y~i~~~~~---------------~~efL~~la~r~g~ 427 (457)
.++.+..........+...+ ..+.+++-+++|-..+ ..+--+.+|++.|.
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCC
No 465
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=97.43 E-value=0.0004 Score=64.89 Aligned_cols=88 Identities=18% Similarity=0.194 Sum_probs=57.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCCh-------------hhHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~-------------~~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|.|..++.+... ..+.+.+....++.|+|||.||+||.+. .+...-.+.+.+...
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 152 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIG 152 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcC
Confidence 5688999999999987743321 1222333344467899999999998531 111222333444444
Q ss_pred e-eEEEeeccCCCC-hHHHHHHHHH
Q 012726 274 S-LAFHASINKSFG-KGSLLSVLRQ 296 (457)
Q Consensus 274 ~-~~f~iSa~~~~G-i~~Li~~L~~ 296 (457)
. ..+.+||+++.| +.++...+.+
T Consensus 153 ~~~~~E~SAk~~~n~v~~~F~~~~~ 177 (182)
T cd04172 153 AATYIECSALQSENSVRDIFHVATL 177 (182)
T ss_pred CCEEEECCcCCCCCCHHHHHHHHHH
Confidence 3 567789999998 9998877654
No 466
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=97.42 E-value=0.00047 Score=64.06 Aligned_cols=91 Identities=14% Similarity=0.101 Sum_probs=57.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChhh-----------HHHHHHHHHhcCC-e
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWA-----------TKGWLRVLSKEYP-S 274 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-----------~~~wl~~l~~~~p-~ 274 (457)
.+..+|++++|.|..++.+... ..+...+....++.|+|+|.||+|+.+... ...-...+.+.+. .
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAK 148 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCc
Confidence 3578899999999865542111 112233333345799999999999864211 0111222333333 3
Q ss_pred eEEEeeccCCCChHHHHHHHHHHHH
Q 012726 275 LAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 275 ~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
..|.+||+++.|++++++.|.+.+.
T Consensus 149 ~~~e~Sa~~~~~v~~~f~~l~~~~~ 173 (187)
T cd04129 149 KYMECSALTGEGVDDVFEAATRAAL 173 (187)
T ss_pred EEEEccCCCCCCHHHHHHHHHHHHh
Confidence 5678899999999999999876553
No 467
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=97.42 E-value=0.00091 Score=60.46 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=58.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hhc-CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC-KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~-~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++++|.|..++-+. ..+.+++. ... .+.|+++|.||+||.... ........+.+......+.+||+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf--~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~ 145 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSY--QHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSAC 145 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 356789999999998765321 23334433 222 257999999999996432 22233344444444556889999
Q ss_pred CCCChHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQ 296 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~ 296 (457)
++.|+++++..|.+
T Consensus 146 ~~~~v~~~f~~l~~ 159 (161)
T cd04117 146 TNSNIKESFTRLTE 159 (161)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999888754
No 468
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00021 Score=73.39 Aligned_cols=62 Identities=23% Similarity=0.259 Sum_probs=41.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce------ecCCCCceeEEEE--EEc-----CCcEEEEecCCcccCC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK------VAPIPGETKVWQY--ITL-----TKRIFLIDCPGVVYQN 365 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~------vs~~pg~T~~~~~--~~~-----~~~i~liDtPGi~~~~ 365 (457)
+-.++++++|-.|.|||||||+|+...... .+..|-.|..+.. ..+ .-++.++||||+...-
T Consensus 19 G~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 19 GFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred CCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 346899999999999999999999874432 1222223433322 112 1267899999998653
No 469
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=97.40 E-value=0.0011 Score=63.14 Aligned_cols=139 Identities=14% Similarity=0.137 Sum_probs=74.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
.|.++|.+||||||||+.+....... ..+..|..-....+.++ -.+.++||+|--.... -..++.++.. .
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV-f 80 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILV-Y 80 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE-E
Confidence 68999999999999999998654321 12222221111223333 2578999999643211 1356666653 3
Q ss_pred ccCC---cccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHc-CCc-----ccCCcccHHHHHHHH
Q 012726 379 RVTN---LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKST-GKL-----LRVCLFLHFISWYLF 443 (457)
Q Consensus 379 ~~~~---l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~-g~l-----~kgg~pD~~~aa~~~ 443 (457)
++.+ +.+....+. .+.+. +.+.+.+-+|+|-.. -..+..+.+|++. |.. .+-|. +++.+-..+
T Consensus 81 Dvtd~~Sf~~l~~w~~-~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~-gV~e~F~~l 158 (202)
T cd04120 81 DITKKETFDDLPKWMK-MIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNF-NVDEIFLKL 158 (202)
T ss_pred ECcCHHHHHHHHHHHH-HHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCC-CHHHHHHHH
Confidence 3322 333323332 33332 246788889988422 1234456677664 431 12332 555566666
Q ss_pred HHHHHh
Q 012726 444 FYDHIT 449 (457)
Q Consensus 444 l~d~~~ 449 (457)
++.+..
T Consensus 159 ~~~~~~ 164 (202)
T cd04120 159 VDDILK 164 (202)
T ss_pred HHHHHH
Confidence 665543
No 470
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00028 Score=71.06 Aligned_cols=91 Identities=16% Similarity=0.147 Sum_probs=60.0
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH--hcCCCcEEEEeecCCCCChhhHHH----HHHHHHhcC--CeeEEEee
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE--HCKHKHMILLLNKCDLVPAWATKG----WLRVLSKEY--PSLAFHAS 280 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~--~~~~K~vIlVLNKiDLvp~~~~~~----wl~~l~~~~--p~~~f~iS 280 (457)
-..--|-.|+|++|..|... +.. .++|.. .-.-+++|+|-||+||+.++...+ ..++++... ...++++|
T Consensus 106 GAAlMDgAlLvIaANEpcPQ-PQT-~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiS 183 (415)
T COG5257 106 GAALMDGALLVIAANEPCPQ-PQT-REHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPIS 183 (415)
T ss_pred chhhhcceEEEEecCCCCCC-Cch-HHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeeeh
Confidence 33445889999999765321 111 112211 123589999999999998764432 222332222 24678999
Q ss_pred ccCCCChHHHHHHHHHHHHhh
Q 012726 281 INKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~~~ 301 (457)
|.++.+++.|++.|.++.|..
T Consensus 184 A~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 184 AQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred hhhccCHHHHHHHHHHhCCCC
Confidence 999999999999999998753
No 471
>COG2229 Predicted GTPase [General function prediction only]
Probab=97.40 E-value=0.001 Score=62.04 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=71.1
Q ss_pred HHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcC-CeeEEE
Q 012726 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY-PSLAFH 278 (457)
Q Consensus 200 kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~-p~~~f~ 278 (457)
++||+-+. ..++-.+++||+++|.......+.+++....+ .|+++.+||.||-+.+-.+...+++.... ...++.
T Consensus 82 ~fm~~~l~---~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~-ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~ 157 (187)
T COG2229 82 KFMWEILS---RGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP-IPVVVAINKQDLFDALPPEKIREALKLELLSVPVIE 157 (187)
T ss_pred HHHHHHHh---CCcceEEEEEecCCCcchHHHHHHHHHhhccC-CCEEEEeeccccCCCCCHHHHHHHHHhccCCCceee
Confidence 66776654 45889999999999988766777777765322 79999999999987766666677776663 566777
Q ss_pred eeccCCCChHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~ 297 (457)
.+|.+++|..+.+..|...
T Consensus 158 ~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 158 IDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eecccchhHHHHHHHHHhh
Confidence 8999999988776666543
No 472
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.39 E-value=0.00036 Score=78.25 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=62.8
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
++.+..++|+||.++. ..++..++..+|++|+|+|+.+........+..++.. .+.|+|+|+||
T Consensus 73 ~~~~i~liDTPG~~~~--------------~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~--~~~p~ivviNK 136 (689)
T TIGR00484 73 KGHRINIIDTPGHVDF--------------TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANR--YEVPRIAFVNK 136 (689)
T ss_pred CCeEEEEEECCCCcch--------------hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCEEEEEEC
Confidence 4556678899998632 1245677888999999999988776655566666554 37899999999
Q ss_pred CCCCChhhHHHHHHHHHhcC---C-eeEEEeeccCCC
Q 012726 253 CDLVPAWATKGWLRVLSKEY---P-SLAFHASINKSF 285 (457)
Q Consensus 253 iDLvp~~~~~~wl~~l~~~~---p-~~~f~iSa~~~~ 285 (457)
+|+.... ....++.+...+ + ...+++|+..++
T Consensus 137 ~D~~~~~-~~~~~~~i~~~l~~~~~~~~ipis~~~~~ 172 (689)
T TIGR00484 137 MDKTGAN-FLRVVNQIKQRLGANAVPIQLPIGAEDNF 172 (689)
T ss_pred CCCCCCC-HHHHHHHHHHHhCCCceeEEeccccCCCc
Confidence 9998533 222233333321 1 235566665543
No 473
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.38 E-value=0.00032 Score=71.83 Aligned_cols=62 Identities=23% Similarity=0.219 Sum_probs=40.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceec---CCCC------ceeEEEEEEc-----CCcEEEEecCCcccCC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVA---PIPG------ETKVWQYITL-----TKRIFLIDCPGVVYQN 365 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs---~~pg------~T~~~~~~~~-----~~~i~liDtPGi~~~~ 365 (457)
+-+++|++||-.|.|||||||+|++....... +..+ +........+ .-++.+|||||+...-
T Consensus 21 Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 21 GIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI 96 (373)
T ss_pred CCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence 56789999999999999999999987443221 1211 1111111112 1268999999998753
No 474
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=97.33 E-value=0.0053 Score=59.86 Aligned_cols=141 Identities=16% Similarity=0.063 Sum_probs=75.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC---CcEEEEecCCcccCC-----CCCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
.++|+++|-++||||||++.+...... ...+.-|..-.. .+.++ -.+.|+||+|--... .-..++.++.
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl- 90 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL- 90 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE-
Confidence 578999999999999999999865431 111111111111 12222 257899999953211 1145666665
Q ss_pred ccccCCc---ccH-HHHHHHHHHhc-CcceehhhcCCCCCC---------------CHHHHHHHHHHHcCCc------cc
Q 012726 377 VVRVTNL---EDA-AEHIGEVLKRV-KKEHLKRAYKIKDWV---------------DENDFLLQLCKSTGKL------LR 430 (457)
Q Consensus 377 vv~~~~l---~~~-~~~i~~~L~~~-~~~~l~~~y~i~~~~---------------~~~efL~~la~r~g~l------~k 430 (457)
|.++.+. ... ...+..+.... ..+.+.+-+++|-.. -..+-.+.+|++.|.. .+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk 170 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF 170 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence 3333322 221 12223333323 346778889988321 1234567899998862 23
Q ss_pred CCcccHHHHHHHHHHHHH
Q 012726 431 VCLFLHFISWYLFFYDHI 448 (457)
Q Consensus 431 gg~pD~~~aa~~~l~d~~ 448 (457)
-|+-+++.+-..+++.|.
T Consensus 171 tg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 171 TSEKSIHSIFRSASLLCL 188 (232)
T ss_pred cCCcCHHHHHHHHHHHHH
Confidence 343344444444444443
No 475
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.32 E-value=0.00097 Score=69.67 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=91.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhC--CC-------------CceecCC---------CCceeEEEEEEcCCcEEEEecCCc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT--KN-------------VCKVAPI---------PGETKVWQYITLTKRIFLIDCPGV 361 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~--~~-------------~~~vs~~---------pg~T~~~~~~~~~~~i~liDtPGi 361 (457)
.-+-++|-+|-+||+||--.|+- .. ..++|++ .=+|.+.|+-+-+..+.|+||||-
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 34579999999999999988762 11 1112221 123445566555678899999998
Q ss_pred ccCCCCC-----ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC-CCCCHHHHHHHHHHHcCC
Q 012726 362 VYQNKDS-----ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK-DWVDENDFLLQLCKSTGK 427 (457)
Q Consensus 362 ~~~~~~~-----e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~-~~~~~~efL~~la~r~g~ 427 (457)
-.-+.+. ..|-.+.+++....++.....+.++.+..+.+.+...|++| +..++-|+|..+....|.
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i 163 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGI 163 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCc
Confidence 7766552 45777777788888888888899999999999999999999 577999999999887764
No 476
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.32 E-value=0.00051 Score=69.33 Aligned_cols=116 Identities=14% Similarity=0.101 Sum_probs=76.8
Q ss_pred hccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCC-----------------------
Q 012726 171 NDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQG----------------------- 227 (457)
Q Consensus 171 ~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~----------------------- 227 (457)
+|+.++.+.+|.||+..-+.. . +-.=+++..++.+||+|++|+|+..+..
T Consensus 106 ~Y~ga~IQild~Pgii~gas~---g----~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V 178 (365)
T COG1163 106 EYKGAQIQLLDLPGIIEGASS---G----RGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDV 178 (365)
T ss_pred eecCceEEEEcCcccccCccc---C----CCCcceeeeeeccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCce
Confidence 577788888999988643322 1 2123567788999999999999975532
Q ss_pred -------------------CCCH-HHHHHHHH-------------------------hcCCCcEEEEeecCCCCChhhHH
Q 012726 228 -------------------TRCH-HLERHLKE-------------------------HCKHKHMILLLNKCDLVPAWATK 262 (457)
Q Consensus 228 -------------------s~~~-~l~k~L~~-------------------------~~~~K~vIlVLNKiDLvp~~~~~ 262 (457)
..++ .+-..|.+ ..--+|.|+|+||+|+...+.+.
T Consensus 179 ~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~ 258 (365)
T COG1163 179 TIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELE 258 (365)
T ss_pred EEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHH
Confidence 0111 11111111 00127999999999999865544
Q ss_pred HHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 263 GWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 263 ~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.. .+.. ..+++||..++|+++|.+.|-..+.
T Consensus 259 ~l----~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 259 RL----ARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred HH----Hhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 33 3332 4567899999999999999987764
No 477
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=97.31 E-value=0.0016 Score=59.54 Aligned_cols=91 Identities=10% Similarity=0.043 Sum_probs=57.4
Q ss_pred hhhccCEEEEEeeCCCCCCCC-CHHHHHHHHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~-~~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
....+|.+++|+|+.+..... ...+...+... ..+.|+|+|+||+|+..... .......+.+.+....+.+||.++
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN 148 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 456789999999987643110 01111222211 23679999999999974321 122223344444456788999999
Q ss_pred CChHHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFAR 299 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~ 299 (457)
.|+.++++.|.....
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (180)
T cd04137 149 ENVEEAFELLIEEIE 163 (180)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999998876654
No 478
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.30 E-value=0.00057 Score=66.19 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=48.9
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..+.|+||..+ +..++..++..+|.+|+|+|+..........+.+.... .+.|+|+|+||+
T Consensus 72 ~~~i~iiDTPG~~~--------------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~--~~~p~ilviNKi 135 (222)
T cd01885 72 EYLINLIDSPGHVD--------------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK--ERVKPVLVINKI 135 (222)
T ss_pred ceEEEEECCCCccc--------------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 34455789998753 33466778899999999999987765544444444433 368999999999
Q ss_pred CCC
Q 012726 254 DLV 256 (457)
Q Consensus 254 DLv 256 (457)
|+.
T Consensus 136 D~~ 138 (222)
T cd01885 136 DRL 138 (222)
T ss_pred Ccc
Confidence 986
No 479
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=97.29 E-value=0.00052 Score=72.50 Aligned_cols=97 Identities=23% Similarity=0.249 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhc----------CCCcEEEEeecCCCCChhhHHHH--HHHH
Q 012726 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC----------KHKHMILLLNKCDLVPAWATKGW--LRVL 268 (457)
Q Consensus 201 r~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~----------~~K~vIlVLNKiDLvp~~~~~~w--l~~l 268 (457)
.-.+.+.+.+..+|||++|+||-.-+.+.+-.+++.|.... ..++.|++.||+|++++-....| +.+.
T Consensus 337 ~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~ 416 (531)
T KOG1191|consen 337 LGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYP 416 (531)
T ss_pred HhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecc
Confidence 33688899999999999999997767777777777776532 12789999999999976222233 1222
Q ss_pred Hh----cCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 269 SK----EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 269 ~~----~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.. .++... .+|+.++.|...|.+.|.+.+
T Consensus 417 ~~~~~~~~~i~~-~vs~~tkeg~~~L~~all~~~ 449 (531)
T KOG1191|consen 417 SAEGRSVFPIVV-EVSCTTKEGCERLSTALLNIV 449 (531)
T ss_pred ccccCcccceEE-EeeechhhhHHHHHHHHHHHH
Confidence 22 233332 368899999999888876554
No 480
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=97.29 E-value=0.00081 Score=64.14 Aligned_cols=104 Identities=18% Similarity=0.073 Sum_probs=59.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC------C--cEEEEecCCcccCC-----CCCccce
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT------K--RIFLIDCPGVVYQN-----KDSETDI 372 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~------~--~i~liDtPGi~~~~-----~~~e~dl 372 (457)
++|+++|-++||||||++.+++..... ..+..|.+.....+.++ . .+.|+||+|--... .-..++.
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 479999999999999999999765422 22222332222222221 1 47899999964321 1135566
Q ss_pred EEEeccc--cCCcccHHHHHHHHHHhc---------------------CcceehhhcCCCC
Q 012726 373 VLKGVVR--VTNLEDAAEHIGEVLKRV---------------------KKEHLKRAYKIKD 410 (457)
Q Consensus 373 vL~gvv~--~~~l~~~~~~i~~~L~~~---------------------~~~~l~~~y~i~~ 410 (457)
++.+.+- .+.+......+.+++... ..+.+.+-+|+|-
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl 141 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQ 141 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccc
Confidence 6653322 222333334444554431 2367778888873
No 481
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.28 E-value=0.00078 Score=63.29 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=78.7
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcC---CCcEEEEe
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK---HKHMILLL 250 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~---~K~vIlVL 250 (457)
..+..++||||+.+.... .......+.+.+.......|+||+|+|+.. ++..+..+.+.+.+... .+++|+|+
T Consensus 48 ~~~i~viDTPG~~d~~~~---~~~~~~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~ 123 (196)
T cd01852 48 GRRVNVIDTPGLFDTSVS---PEQLSKEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLF 123 (196)
T ss_pred CeEEEEEECcCCCCccCC---hHHHHHHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEE
Confidence 345668999999754210 011124555566666788999999999987 66666667777765321 37899999
Q ss_pred ecCCCCChhhHHHHH-------HHHHhcCC--eeEEEe---eccCCCChHHHHHHHHHHHHhh
Q 012726 251 NKCDLVPAWATKGWL-------RVLSKEYP--SLAFHA---SINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 251 NKiDLvp~~~~~~wl-------~~l~~~~p--~~~f~i---Sa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
|++|-+.......|+ +.+-+... ...|.. |+.++.++.+|++.|.++++++
T Consensus 124 T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 124 TRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred ECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 999987654333332 22222221 234432 2566778889999999998764
No 482
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=97.26 E-value=0.0019 Score=58.65 Aligned_cols=116 Identities=16% Similarity=0.154 Sum_probs=61.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCCCccceEEEeccccC-
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKDSETDIVLKGVVRVT- 381 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~~e~dlvL~gvv~~~- 381 (457)
++|+++|.+|||||||++.++...... ..+..+.- ...+.++ -.+.++||+|--.......++.++. |.++.
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~--~~~i~~~~~~~~l~i~D~~g~~~~~~~~~~~~~il-v~d~~~ 77 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRF--KKEVLVDGQSHLLLIRDEGGAPDAQFASWVDAVIF-VFSLEN 77 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccce--EEEEEECCEEEEEEEEECCCCCchhHHhcCCEEEE-EEECCC
Confidence 478999999999999999876543222 11211111 1122332 2478999999854332344566555 33332
Q ss_pred --CcccHHHHHHHHHHhc---CcceehhhcCCCCC-----CCHHHHHHHHHHHc
Q 012726 382 --NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDW-----VDENDFLLQLCKST 425 (457)
Q Consensus 382 --~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~-----~~~~efL~~la~r~ 425 (457)
.+......+..+.... ..+.+.+-+|.|-. .-.++..+.+|+..
T Consensus 78 ~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~ 131 (158)
T cd04103 78 EASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADM 131 (158)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHh
Confidence 2333333444444332 23566677775521 11233445677654
No 483
>PRK12740 elongation factor G; Reviewed
Probab=97.25 E-value=0.00079 Score=75.18 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=47.7
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
.....++|+||..+ +..++..++..+|++|+|+|+..........+...+.. .+.|+|+|+||+
T Consensus 59 ~~~i~liDtPG~~~--------------~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~ 122 (668)
T PRK12740 59 GHKINLIDTPGHVD--------------FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEK--YGVPRIIFVNKM 122 (668)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 34556788888742 23445667889999999999987654433334444443 378999999999
Q ss_pred CCCC
Q 012726 254 DLVP 257 (457)
Q Consensus 254 DLvp 257 (457)
|+..
T Consensus 123 D~~~ 126 (668)
T PRK12740 123 DRAG 126 (668)
T ss_pred CCCC
Confidence 9874
No 484
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.25 E-value=0.00091 Score=65.57 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=60.3
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhh-ccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVID-SSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~-~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
..++|+||+....... ........+.+.+..+++ ..++||+|+||+..+...+ ..+.+++.. .++++|+|+||+|
T Consensus 127 ltLIDlPGl~~~~~~~-~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~D 203 (240)
T smart00053 127 LTLIDLPGITKVAVGD-QPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKLD 203 (240)
T ss_pred eEEEeCCCccccccCC-ccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECCC
Confidence 3468999985321100 001112455666888888 5679999999987776655 466777765 3789999999999
Q ss_pred CCChhhHHHHHHHHHhc
Q 012726 255 LVPAWATKGWLRVLSKE 271 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~ 271 (457)
++++.. .|++.+...
T Consensus 204 ~~~~~~--~~~~~~~~~ 218 (240)
T smart00053 204 LMDEGT--DARDILENK 218 (240)
T ss_pred CCCccH--HHHHHHhCC
Confidence 987542 277776654
No 485
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=97.24 E-value=0.0016 Score=61.36 Aligned_cols=112 Identities=10% Similarity=-0.016 Sum_probs=69.4
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+..... ....+.+++ .+..+|++|+|.|. +++..+..+.+.+... ++|+++|+||+|+.
T Consensus 54 l~l~DtpG~~~~~~-------~~~~~l~~~--~~~~~d~~l~v~~~--~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~ 120 (197)
T cd04104 54 VTLWDLPGIGSTAF-------PPDDYLEEM--KFSEYDFFIIISST--RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRD 120 (197)
T ss_pred ceEEeCCCCCcccC-------CHHHHHHHh--CccCcCEEEEEeCC--CCCHHHHHHHHHHHHh--CCCEEEEEecccch
Confidence 44678888753211 112222222 25688999998654 5666666777777763 78999999999995
Q ss_pred Ch-h------------hHHHHHHHHH----hc--CCeeEEEeecc--CCCChHHHHHHHHHHHHhh
Q 012726 257 PA-W------------ATKGWLRVLS----KE--YPSLAFHASIN--KSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 257 p~-~------------~~~~wl~~l~----~~--~p~~~f~iSa~--~~~Gi~~Li~~L~~~~~~~ 301 (457)
.. . .+....+.+. .. .+..+|.+|+. .+++...|.+.|...++.+
T Consensus 121 ~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 121 LSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHH
Confidence 32 1 1112222222 11 12356777887 5789999999998887753
No 486
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.23 E-value=0.0014 Score=63.41 Aligned_cols=78 Identities=15% Similarity=0.086 Sum_probs=51.9
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcE-EEEeecCCCCChh-hHHHHHHHHHh-----cCC-eeE
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLNKCDLVPAW-ATKGWLRVLSK-----EYP-SLA 276 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~v-IlVLNKiDLvp~~-~~~~wl~~l~~-----~~p-~~~ 276 (457)
.+...++.+|+|++|+|+..++...+..+.+.+.. .+.|. |+|+||+|+++.. ......+.+.+ .++ ..+
T Consensus 96 ~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki 173 (225)
T cd01882 96 AMIDIAKVADLVLLLIDASFGFEMETFEFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKL 173 (225)
T ss_pred HHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcE
Confidence 34455788999999999988777666667676654 25675 4599999998432 23333333322 223 567
Q ss_pred EEeeccCC
Q 012726 277 FHASINKS 284 (457)
Q Consensus 277 f~iSa~~~ 284 (457)
+++||+++
T Consensus 174 ~~iSa~~~ 181 (225)
T cd01882 174 FYLSGIVH 181 (225)
T ss_pred EEEeeccC
Confidence 78898876
No 487
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.23 E-value=0.00084 Score=63.80 Aligned_cols=58 Identities=17% Similarity=0.072 Sum_probs=36.3
Q ss_pred cceEEEEeecCCCchHHHHHHHh-CCCCceecCCCCceeEEEEEEcC---CcEEEEecCCcc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLR-TKNVCKVAPIPGETKVWQYITLT---KRIFLIDCPGVV 362 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~-~~~~~~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~ 362 (457)
..++|+++|.+|||||||++.++ +.......+..|.......+..+ -.+.++||||-.
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCch
Confidence 46899999999999999997654 43222233333433222222222 257899999964
No 488
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.22 E-value=0.0013 Score=67.45 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=61.7
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
...+++||.|+.+.. ..++..||++++|++. +.+.....+..-+. ...-|+|+||+|
T Consensus 149 ~d~viieT~Gv~qs~-----------------~~i~~~aD~vlvv~~p--~~gd~iq~~k~gi~----E~aDIiVVNKaD 205 (332)
T PRK09435 149 YDVILVETVGVGQSE-----------------TAVAGMVDFFLLLQLP--GAGDELQGIKKGIM----ELADLIVINKAD 205 (332)
T ss_pred CCEEEEECCCCccch-----------------hHHHHhCCEEEEEecC--CchHHHHHHHhhhh----hhhheEEeehhc
Confidence 345678888875211 1146789999999752 22221111111111 123499999999
Q ss_pred CCChhhHHHHHHHHHhc----------CCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 255 LVPAWATKGWLRVLSKE----------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~----------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+++..........+... +...++.+|+.++.|+++|.+.|.++.+
T Consensus 206 l~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 206 GDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 98754333222222221 1134667899999999999999998875
No 489
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.22 E-value=0.00053 Score=67.83 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+ +..++..++..+|.+++|+|+..........+.+.+.. .+.|.++|+||+|
T Consensus 64 ~~i~liDtPG~~~--------------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~--~~~p~iivvNK~D 127 (268)
T cd04170 64 HKINLIDTPGYAD--------------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADE--AGIPRIIFINKMD 127 (268)
T ss_pred EEEEEEECcCHHH--------------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECCc
Confidence 3445678888743 23456667889999999999987655443444445443 3789999999999
Q ss_pred CCChhhHHHHHHHHHhcCC--eeEEEeeccCCCChH
Q 012726 255 LVPAWATKGWLRVLSKEYP--SLAFHASINKSFGKG 288 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~p--~~~f~iSa~~~~Gi~ 288 (457)
+.... ....++.++..+. ...+.+++..+.+..
T Consensus 128 ~~~~~-~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~ 162 (268)
T cd04170 128 RERAD-FDKTLAALQEAFGRPVVPLQLPIGEGDDFK 162 (268)
T ss_pred cCCCC-HHHHHHHHHHHhCCCeEEEEecccCCCcee
Confidence 97542 2333444544432 333444455544443
No 490
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.19 E-value=0.0018 Score=68.23 Aligned_cols=114 Identities=18% Similarity=0.163 Sum_probs=76.7
Q ss_pred hccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHH-HHHHHhcCCCcEEEE
Q 012726 171 NDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLE-RHLKEHCKHKHMILL 249 (457)
Q Consensus 171 ~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~-k~L~~~~~~K~vIlV 249 (457)
+++..-...+||||..+. -.++.+++..+|-||+||||...+......+. +.|. .+-+.|+|
T Consensus 64 ~~~~~~INIvDTPGHADF--------------GGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~---~gL~PIVV 126 (603)
T COG1217 64 NYNGTRINIVDTPGHADF--------------GGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA---LGLKPIVV 126 (603)
T ss_pred ecCCeEEEEecCCCcCCc--------------cchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH---cCCCcEEE
Confidence 344455556888886432 24678899999999999999876655555544 4443 37788999
Q ss_pred eecCCCC---ChhhHHHHHHHHHhcC------CeeEEEeeccCCC----------ChHHHHHHHHHHHHhh
Q 012726 250 LNKCDLV---PAWATKGWLRVLSKEY------PSLAFHASINKSF----------GKGSLLSVLRQFARLK 301 (457)
Q Consensus 250 LNKiDLv---p~~~~~~wl~~l~~~~------p~~~f~iSa~~~~----------Gi~~Li~~L~~~~~~~ 301 (457)
+||+|.- |.|+..+..+.|-... ...++.+|+.+|+ ....|++.|.++.|..
T Consensus 127 vNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P 197 (603)
T COG1217 127 INKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAP 197 (603)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCC
Confidence 9999985 5566665555554331 1234456877664 3557888888877653
No 491
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=97.17 E-value=0.0037 Score=58.48 Aligned_cols=103 Identities=15% Similarity=0.105 Sum_probs=55.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL~g 376 (457)
.++|+++|.+|||||||++.+...... ...+..|..-. ..+.++. .+.|+||||--... .-..++.++..
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 478999999999999999999865431 11222221111 1122332 47899999953321 11346666552
Q ss_pred ccccC---CcccHHHHHHHHHHh-c-CcceehhhcCCCC
Q 012726 377 VVRVT---NLEDAAEHIGEVLKR-V-KKEHLKRAYKIKD 410 (457)
Q Consensus 377 vv~~~---~l~~~~~~i~~~L~~-~-~~~~l~~~y~i~~ 410 (457)
.++. .+..........+.. . ..+.+.+-++.|-
T Consensus 82 -ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL 119 (191)
T cd01875 82 -FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDL 119 (191)
T ss_pred -EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhh
Confidence 2322 222222111121222 1 3467788888873
No 492
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=97.16 E-value=0.0041 Score=56.26 Aligned_cols=98 Identities=19% Similarity=0.261 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhhccCEEEEEeeCCCCCCC--CCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhc----C
Q 012726 200 KRIWGELYKVIDSSDVVVQVLDARDPQGT--RCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKE----Y 272 (457)
Q Consensus 200 kr~~~el~k~I~~sDvIL~VvDardp~~s--~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~ 272 (457)
+.||+.-.+ .+|+|++|+||.+|-.- .-.++...|-+ .-.+.|++++-||+|+-..-.-...++.+.-. .
T Consensus 79 rsmWerycR---~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdR 155 (186)
T KOG0075|consen 79 RSMWERYCR---GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDR 155 (186)
T ss_pred HHHHHHHhh---cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccc
Confidence 778877654 66999999999986421 11344455543 22478999999999986432223344433221 2
Q ss_pred CeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 273 PSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 273 p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
....|.+|+++..+++.+++.|.+.++.
T Consensus 156 EvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 156 EVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred eEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 3567889999999999999999887653
No 493
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0034 Score=67.27 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=0.0
Q ss_pred CcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCCh
Q 012726 179 GVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPA 258 (457)
Q Consensus 179 ~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~ 258 (457)
|.||||. ..+-.-=.+-..-.|+|++||-|.|.......+..++.+. .+.|+|+.+|||| -|.
T Consensus 205 FLDTPGH--------------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~--A~VpiVvAinKiD-kp~ 267 (683)
T KOG1145|consen 205 FLDTPGH--------------AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKS--ANVPIVVAINKID-KPG 267 (683)
T ss_pred EecCCcH--------------HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHh--cCCCEEEEEeccC-CCC
Q ss_pred hhHHHHHHHHHhc--------CCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 259 WATKGWLRVLSKE--------YPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 259 ~~~~~wl~~l~~~--------~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
...++.+..|... ..+.++++||++|.|++.|.+.+.-.+
T Consensus 268 a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 268 ANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHH
No 494
>PRK13351 elongation factor G; Reviewed
Probab=97.09 E-value=0.0019 Score=72.49 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=48.7
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..+.|+||..+ +..++..++..+|.+|+|+|+.++.......+.+.+.. .+.|+++|+||+
T Consensus 72 ~~~i~liDtPG~~d--------------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~iiviNK~ 135 (687)
T PRK13351 72 NHRINLIDTPGHID--------------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADR--YGIPRLIFINKM 135 (687)
T ss_pred CEEEEEEECCCcHH--------------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEECC
Confidence 34556788888753 22345667889999999999987765444444455443 378999999999
Q ss_pred CCCC
Q 012726 254 DLVP 257 (457)
Q Consensus 254 DLvp 257 (457)
|+..
T Consensus 136 D~~~ 139 (687)
T PRK13351 136 DRVG 139 (687)
T ss_pred CCCC
Confidence 9874
No 495
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=97.09 E-value=0.002 Score=58.43 Aligned_cols=88 Identities=17% Similarity=0.138 Sum_probs=54.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHH--hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCC-eeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYP-SLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~--~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p-~~~f~iSa~~ 283 (457)
.+..+|.+++|+|..++.+-.. ..+.+.+.. ...+.|+++|.||+|+.+... ...-...+.+.+. ...+.+||++
T Consensus 69 ~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (168)
T cd04177 69 YIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARK 148 (168)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCC
Confidence 3567899999999876532111 112222222 124689999999999975331 1111222333333 4577899999
Q ss_pred CCChHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQ 296 (457)
Q Consensus 284 ~~Gi~~Li~~L~~ 296 (457)
+.|++++++.|..
T Consensus 149 ~~~i~~~f~~i~~ 161 (168)
T cd04177 149 RTNVDEVFIDLVR 161 (168)
T ss_pred CCCHHHHHHHHHH
Confidence 9999998888764
No 496
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=97.06 E-value=0.0024 Score=62.30 Aligned_cols=104 Identities=12% Similarity=0.101 Sum_probs=59.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---C-CcEEEEecCCcccCCCC----------CccceE
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---T-KRIFLIDCPGVVYQNKD----------SETDIV 373 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~-~~i~liDtPGi~~~~~~----------~e~dlv 373 (457)
+|.++|..++||||+.+.+.......-...-|.|.+.+...+ + -.+.|+||||-...... +.++.+
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 589999999999999999998655433334455554443332 2 27899999998644221 356777
Q ss_pred EEecccc-CCcccHHHHHHHHHHh---cCc--ceehhhcCCCCC
Q 012726 374 LKGVVRV-TNLEDAAEHIGEVLKR---VKK--EHLKRAYKIKDW 411 (457)
Q Consensus 374 L~gvv~~-~~l~~~~~~i~~~L~~---~~~--~~l~~~y~i~~~ 411 (457)
+.+++.. +++.+...++...++. .++ ..-+...|+|..
T Consensus 81 IyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l 124 (232)
T PF04670_consen 81 IYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLL 124 (232)
T ss_dssp EEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS
T ss_pred EEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccC
Confidence 7755544 4555555555554443 343 244456788753
No 497
>COG1084 Predicted GTPase [General function prediction only]
Probab=97.05 E-value=0.0037 Score=63.34 Aligned_cols=113 Identities=17% Similarity=0.199 Sum_probs=72.2
Q ss_pred CCcCCcchHhhhhhhhhcccchHHHHHHHHHhh-hccCEEEEEeeCCCCCCCCCH---HHHHHHHHhcCCCcEEEEeecC
Q 012726 178 EGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVI-DSSDVVVQVLDARDPQGTRCH---HLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 178 ~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I-~~sDvIL~VvDardp~~s~~~---~l~k~L~~~~~~K~vIlVLNKi 253 (457)
+.+||||+-+-. +.+.| .+-+++.-+| .-.++|||++|++.--+-.-+ ++.+.++... ..|+++|+||+
T Consensus 218 QvIDTPGlLDRP---l~ErN---~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f-~~p~v~V~nK~ 290 (346)
T COG1084 218 QVIDTPGLLDRP---LEERN---EIERQAILALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF-KAPIVVVINKI 290 (346)
T ss_pred EEecCCcccCCC---hHHhc---HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc-CCCeEEEEecc
Confidence 357999986433 22222 3334444444 456999999998644332222 2444444443 48999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 254 DLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
|+...+.......++..........+++..+.+.+.+...+...
T Consensus 291 D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 291 DIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred cccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 99987777666666665554444456788888888777776655
No 498
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.05 E-value=0.00039 Score=59.45 Aligned_cols=71 Identities=27% Similarity=0.328 Sum_probs=48.2
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
.....++|+||+......... ...+.++.+.+..+|++++|+|+..+.......+.++|+ .++|+++|+||
T Consensus 46 ~~~~~~vDtpG~~~~~~~~~~-----~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 46 NKKFILVDTPGINDGESQDND-----GKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp TEEEEEEESSSCSSSSHHHHH-----HHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH---TTSEEEEEEES
T ss_pred eeeEEEEeCCCCcccchhhHH-----HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh---cCCCEEEEEcC
Confidence 333458999998532221110 135666777789999999999988754434455656664 48999999998
No 499
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.05 E-value=0.0011 Score=70.91 Aligned_cols=107 Identities=21% Similarity=0.306 Sum_probs=63.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceec--CCCCceeEEEE-----------------------------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVA--PIPGETKVWQY----------------------------------- 346 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs--~~pg~T~~~~~----------------------------------- 346 (457)
...++|+++|+-..|||||+.+|++....... -.-|.|.+.-+
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 35689999999999999999999974321100 01122211110
Q ss_pred -EEcCCcEEEEecCCcccCC-----CCCccceEEEeccccCC-cccH-HHHHHHHHHhcCc-ceehhhcCCCCC
Q 012726 347 -ITLTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTN-LEDA-AEHIGEVLKRVKK-EHLKRAYKIKDW 411 (457)
Q Consensus 347 -~~~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~-l~~~-~~~i~~~L~~~~~-~~l~~~y~i~~~ 411 (457)
..+...+.|+||||..... ....+|.++..|...+. .... .+++ .++..++. +.+.+++|+|-.
T Consensus 112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl-~i~~~lgi~~iIVvlNKiDlv 184 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL-AAVEIMKLKHIIILQNKIDLV 184 (460)
T ss_pred cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH-HHHHHcCCCcEEEEEeccccc
Confidence 0112368999999953221 11457888886665543 2222 2343 45555554 467899999853
No 500
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=96.99 E-value=0.011 Score=54.50 Aligned_cols=144 Identities=17% Similarity=0.102 Sum_probs=90.8
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----CCCccceEEEeccc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-----KDSETDIVLKGVVR 379 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~ 379 (457)
+.++|.++|..|+||+|+++.|.+...-.++|.-|.-..--.+ -+-.+.++|.-|=..-. --+.+|.++.+++.
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDs 93 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEY-KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDS 93 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEe-cceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEEC
Confidence 4899999999999999999999999988888876642211111 13467899998854321 11456666665554
Q ss_pred cC--CcccHHHHHHHHHH---hcCcceehhhcCCCCC--CCHHHH-----HHHHHHHcCCcccCCc----ccHHHHHHHH
Q 012726 380 VT--NLEDAAEHIGEVLK---RVKKEHLKRAYKIKDW--VDENDF-----LLQLCKSTGKLLRVCL----FLHFISWYLF 443 (457)
Q Consensus 380 ~~--~l~~~~~~i~~~L~---~~~~~~l~~~y~i~~~--~~~~ef-----L~~la~r~g~l~kgg~----pD~~~aa~~~ 443 (457)
.+ .+.+....+..+|. ..+.+.|...++.|-. -+.+++ |+.+++.+-+-.-+.. -|+..+-.++
T Consensus 94 sD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~gidWL 173 (185)
T KOG0073|consen 94 SDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEGIDWL 173 (185)
T ss_pred chHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHHHHHH
Confidence 33 33444455555553 2345778888887732 333443 5666655554443322 3666788888
Q ss_pred HHHHHh
Q 012726 444 FYDHIT 449 (457)
Q Consensus 444 l~d~~~ 449 (457)
++|-..
T Consensus 174 ~~~l~~ 179 (185)
T KOG0073|consen 174 CDDLMS 179 (185)
T ss_pred HHHHHH
Confidence 887765
Done!