Query 012726
Match_columns 457
No_of_seqs 491 out of 3053
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 15:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012726.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012726hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1puj_A YLQF, conserved hypothe 100.0 2.5E-45 8.7E-50 363.7 22.9 257 196-457 7-277 (282)
2 3cnl_A YLQF, putative uncharac 100.0 2.4E-41 8.3E-46 331.8 7.4 239 196-457 5-245 (262)
3 3ec1_A YQEH GTPase; atnos1, at 99.9 2.6E-27 8.9E-32 242.8 14.0 238 160-429 36-307 (369)
4 3h2y_A GTPase family protein; 99.9 7.9E-27 2.7E-31 239.2 12.7 244 159-429 33-306 (368)
5 1mky_A Probable GTP-binding pr 99.9 6.9E-23 2.4E-27 214.1 18.6 285 123-426 8-324 (439)
6 2hjg_A GTP-binding protein ENG 99.9 1.1E-22 3.8E-27 212.3 15.3 282 123-426 10-318 (436)
7 4dcu_A GTP-binding protein ENG 99.9 1.3E-21 4.5E-26 205.4 17.7 304 123-448 30-371 (456)
8 1t9h_A YLOQ, probable GTPase E 99.8 3.6E-19 1.2E-23 178.1 7.0 144 209-365 83-238 (307)
9 2yv5_A YJEQ protein; hydrolase 99.7 5.2E-17 1.8E-21 161.8 14.3 142 209-363 76-228 (302)
10 2rcn_A Probable GTPase ENGC; Y 99.7 4.5E-17 1.5E-21 166.0 11.7 145 205-363 123-280 (358)
11 1u0l_A Probable GTPase ENGC; p 99.7 2.3E-16 7.7E-21 157.0 13.8 143 209-364 81-234 (301)
12 2e87_A Hypothetical protein PH 99.6 7.5E-17 2.5E-21 163.9 3.1 198 214-412 59-294 (357)
13 1wf3_A GTP-binding protein; GT 99.3 8E-12 2.7E-16 124.3 11.3 107 306-412 7-131 (301)
14 4a9a_A Ribosome-interacting GT 99.3 3.9E-12 1.3E-16 130.4 7.2 101 307-409 73-193 (376)
15 3iev_A GTP-binding protein ERA 99.3 9.3E-12 3.2E-16 123.9 9.3 123 304-426 8-153 (308)
16 1svi_A GTP-binding protein YSX 99.2 3.9E-11 1.3E-15 109.1 12.2 122 304-425 21-163 (195)
17 1mky_A Probable GTP-binding pr 99.2 7.6E-12 2.6E-16 130.4 8.3 103 308-410 3-122 (439)
18 3pqc_A Probable GTP-binding pr 99.2 6.3E-11 2.1E-15 107.2 12.9 107 305-411 22-146 (195)
19 4dhe_A Probable GTP-binding pr 99.2 1.6E-11 5.6E-16 114.3 9.2 108 305-412 28-158 (223)
20 1ega_A Protein (GTP-binding pr 99.2 3.6E-11 1.2E-15 119.3 11.8 121 306-427 8-148 (301)
21 3lxw_A GTPase IMAP family memb 99.2 2.6E-11 8.7E-16 116.9 9.7 122 304-426 19-176 (247)
22 2hjg_A GTP-binding protein ENG 99.2 1.3E-11 4.6E-16 128.4 6.4 104 307-410 4-123 (436)
23 2qtf_A Protein HFLX, GTP-bindi 99.2 1.9E-12 6.6E-17 132.2 -0.9 198 195-412 67-306 (364)
24 4dcu_A GTP-binding protein ENG 99.1 3E-11 1E-15 126.6 6.4 105 306-410 23-143 (456)
25 3i8s_A Ferrous iron transport 99.1 1E-10 3.5E-15 114.4 9.9 101 306-409 3-123 (274)
26 3gee_A MNME, tRNA modification 99.1 1E-10 3.6E-15 123.4 10.1 107 304-410 231-355 (476)
27 3iby_A Ferrous iron transport 99.1 9.8E-11 3.4E-15 113.7 8.9 100 307-409 2-121 (256)
28 1xzp_A Probable tRNA modificat 99.1 8.2E-11 2.8E-15 124.4 5.4 104 305-410 242-362 (482)
29 1h65_A Chloroplast outer envel 99.0 1.5E-09 5.1E-14 105.4 13.4 107 304-410 37-166 (270)
30 2cxx_A Probable GTP-binding pr 99.0 1.2E-09 4E-14 98.5 11.6 118 307-427 2-151 (190)
31 2xtp_A GTPase IMAP family memb 99.0 3.7E-10 1.3E-14 108.6 8.8 106 304-410 20-151 (260)
32 2dyk_A GTP-binding protein; GT 99.0 3.8E-10 1.3E-14 98.8 7.4 106 307-412 2-122 (161)
33 3def_A T7I23.11 protein; chlor 99.0 1.8E-09 6.2E-14 104.5 12.8 116 305-420 35-177 (262)
34 3a1s_A Iron(II) transport prot 99.0 7.4E-10 2.5E-14 107.5 9.7 102 305-409 4-121 (258)
35 3t5d_A Septin-7; GTP-binding p 99.0 1E-09 3.4E-14 107.0 10.7 106 305-411 7-157 (274)
36 3lxx_A GTPase IMAP family memb 99.0 8.2E-10 2.8E-14 104.9 9.1 122 304-427 27-183 (239)
37 2gj8_A MNME, tRNA modification 99.0 5.6E-10 1.9E-14 100.7 7.3 105 305-409 3-126 (172)
38 3k53_A Ferrous iron transport 99.0 1.2E-09 3.9E-14 106.3 9.2 101 306-409 3-120 (271)
39 3geh_A MNME, tRNA modification 99.0 3.2E-10 1.1E-14 119.3 5.6 122 304-427 222-384 (462)
40 1jwy_B Dynamin A GTPase domain 98.9 1.6E-09 5.5E-14 106.8 9.4 107 305-411 23-211 (315)
41 1wxq_A GTP-binding protein; st 98.9 1.1E-09 3.8E-14 113.0 7.9 74 307-381 1-113 (397)
42 3b1v_A Ferrous iron uptake tra 98.9 2.4E-09 8.1E-14 104.9 9.8 101 306-409 3-118 (272)
43 1upt_A ARL1, ADP-ribosylation 98.9 5.2E-09 1.8E-13 92.4 11.1 116 304-421 5-133 (171)
44 3q72_A GTP-binding protein RAD 98.9 4.8E-09 1.7E-13 92.3 10.5 122 306-427 2-138 (166)
45 3iev_A GTP-binding protein ERA 98.9 8.9E-10 3E-14 109.6 6.3 121 174-300 58-182 (308)
46 2nzj_A GTP-binding protein REM 98.9 5.8E-09 2E-13 92.4 11.0 121 305-427 3-143 (175)
47 2x77_A ADP-ribosylation factor 98.9 5.7E-09 2E-13 94.4 10.3 117 304-421 20-148 (189)
48 2aka_B Dynamin-1; fusion prote 98.9 5.5E-09 1.9E-13 101.9 10.5 35 305-339 25-64 (299)
49 1zj6_A ADP-ribosylation factor 98.9 1.7E-08 5.7E-13 91.3 13.0 117 304-421 14-142 (187)
50 1pui_A ENGB, probable GTP-bind 98.9 2.1E-09 7.2E-14 99.0 7.0 109 304-412 24-151 (210)
51 2j69_A Bacterial dynamin-like 98.9 3.4E-09 1.2E-13 116.8 9.8 107 304-410 67-242 (695)
52 2ohf_A Protein OLA1, GTP-bindi 98.9 2.2E-10 7.4E-15 118.1 -0.1 74 304-378 20-125 (396)
53 3clv_A RAB5 protein, putative; 98.9 2.2E-08 7.4E-13 90.3 13.3 124 304-427 5-178 (208)
54 2qpt_A EH domain-containing pr 98.8 6.3E-09 2.1E-13 111.7 10.3 107 305-411 64-231 (550)
55 1ek0_A Protein (GTP-binding pr 98.8 1.5E-08 5.1E-13 89.0 11.0 122 306-427 3-143 (170)
56 2h17_A ADP-ribosylation factor 98.8 1.1E-08 3.6E-13 92.3 10.3 116 304-420 19-146 (181)
57 2wji_A Ferrous iron transport 98.8 5.7E-09 1.9E-13 92.9 8.4 101 306-409 3-119 (165)
58 3cph_A RAS-related protein SEC 98.8 2.6E-08 8.9E-13 91.5 12.8 123 304-427 18-156 (213)
59 1moz_A ARL1, ADP-ribosylation 98.8 1.1E-08 3.6E-13 91.7 9.7 116 304-420 16-143 (183)
60 2qu8_A Putative nucleolar GTP- 98.8 1.2E-08 3.9E-13 96.0 10.1 122 304-426 27-176 (228)
61 2ged_A SR-beta, signal recogni 98.8 4.9E-09 1.7E-13 95.0 7.3 138 285-426 24-186 (193)
62 1wf3_A GTP-binding protein; GT 98.8 1.5E-09 5.2E-14 107.8 4.2 156 123-299 14-172 (301)
63 3qq5_A Small GTP-binding prote 98.8 2.2E-09 7.7E-14 111.6 5.5 104 305-410 33-152 (423)
64 2x2e_A Dynamin-1; nitration, h 98.8 1.3E-08 4.6E-13 102.8 11.1 53 287-339 9-69 (353)
65 3t5g_A GTP-binding protein RHE 98.8 3.1E-08 1.1E-12 88.6 12.3 122 305-427 5-143 (181)
66 1ksh_A ARF-like protein 2; sma 98.8 1.3E-08 4.5E-13 91.7 9.9 117 304-421 16-144 (186)
67 1z0j_A RAB-22, RAS-related pro 98.8 2.9E-08 1E-12 87.2 11.8 123 305-427 5-143 (170)
68 2fg5_A RAB-22B, RAS-related pr 98.8 2.6E-08 8.8E-13 90.7 11.6 124 304-427 21-160 (192)
69 1x3s_A RAS-related protein RAB 98.8 7E-09 2.4E-13 93.7 7.7 107 208-321 83-194 (195)
70 2lkc_A Translation initiation 98.8 1.2E-08 4.1E-13 90.8 8.9 117 304-421 6-131 (178)
71 1kao_A RAP2A; GTP-binding prot 98.8 1.6E-08 5.5E-13 88.3 9.6 121 306-427 3-140 (167)
72 2h57_A ADP-ribosylation factor 98.8 2.1E-08 7.3E-13 90.9 10.7 116 304-421 19-151 (190)
73 1g16_A RAS-related protein SEC 98.8 3.8E-08 1.3E-12 86.5 12.1 121 306-427 3-139 (170)
74 4dsu_A GTPase KRAS, isoform 2B 98.8 3.2E-08 1.1E-12 88.7 11.6 121 305-427 3-140 (189)
75 1lnz_A SPO0B-associated GTP-bi 98.8 4.9E-09 1.7E-13 106.1 6.8 116 308-426 160-301 (342)
76 2efe_B Small GTP-binding prote 98.8 4.3E-08 1.5E-12 87.4 12.2 124 304-427 10-149 (181)
77 2wjg_A FEOB, ferrous iron tran 98.8 1.4E-08 4.8E-13 91.5 9.0 120 305-427 6-143 (188)
78 4dhe_A Probable GTP-binding pr 98.8 1.7E-08 5.9E-13 93.7 9.8 123 175-300 79-211 (223)
79 4bas_A ADP-ribosylation factor 98.8 3.6E-08 1.2E-12 89.4 11.8 118 304-422 15-153 (199)
80 2gf9_A RAS-related protein RAB 98.8 5.9E-08 2E-12 87.8 13.0 123 305-427 21-159 (189)
81 1z2a_A RAS-related protein RAB 98.8 5E-08 1.7E-12 85.5 11.7 123 305-427 4-141 (168)
82 1jal_A YCHF protein; nucleotid 98.8 4E-09 1.4E-13 107.6 5.0 74 306-380 2-107 (363)
83 3r7w_A Gtpase1, GTP-binding pr 98.8 1.7E-08 5.9E-13 100.1 9.4 122 305-427 2-153 (307)
84 1r2q_A RAS-related protein RAB 98.8 5.9E-08 2E-12 85.1 11.8 123 305-427 5-143 (170)
85 1x3s_A RAS-related protein RAB 98.7 5.3E-08 1.8E-12 87.9 11.5 123 305-427 14-152 (195)
86 1fzq_A ADP-ribosylation factor 98.7 1.4E-08 4.9E-13 91.8 7.6 107 304-411 14-130 (181)
87 2g6b_A RAS-related protein RAB 98.7 8.4E-08 2.9E-12 85.4 12.4 124 304-427 8-148 (180)
88 3zvr_A Dynamin-1; hydrolase, D 98.7 6.5E-08 2.2E-12 107.1 13.4 131 280-411 19-230 (772)
89 3tw8_B RAS-related protein RAB 98.7 9.3E-08 3.2E-12 84.9 11.9 122 305-427 8-145 (181)
90 2oil_A CATX-8, RAS-related pro 98.7 8E-08 2.7E-12 87.1 11.5 122 305-427 24-162 (193)
91 2ce2_X GTPase HRAS; signaling 98.7 7.2E-08 2.5E-12 83.9 10.7 119 306-427 3-139 (166)
92 3tkl_A RAS-related protein RAB 98.7 1.4E-07 4.6E-12 85.4 12.8 122 305-427 15-153 (196)
93 3j2k_7 ERF3, eukaryotic polype 98.7 2.6E-08 8.9E-13 103.9 9.0 107 304-410 15-167 (439)
94 1m2o_B GTP-binding protein SAR 98.7 5.3E-08 1.8E-12 88.9 9.8 105 305-411 22-137 (190)
95 1z06_A RAS-related protein RAB 98.7 7E-08 2.4E-12 87.3 10.5 124 304-427 18-159 (189)
96 1zbd_A Rabphilin-3A; G protein 98.7 6.9E-08 2.4E-12 88.2 10.5 123 305-427 7-145 (203)
97 2b6h_A ADP-ribosylation factor 98.7 6.6E-08 2.3E-12 88.4 10.3 116 304-421 27-155 (192)
98 3kkq_A RAS-related protein M-R 98.7 1.3E-07 4.3E-12 84.7 11.7 123 304-427 16-155 (183)
99 1z0f_A RAB14, member RAS oncog 98.7 1.1E-07 3.9E-12 84.1 11.1 123 305-427 14-152 (179)
100 1c1y_A RAS-related protein RAP 98.7 1.1E-07 3.7E-12 83.3 10.7 118 306-425 3-138 (167)
101 1f6b_A SAR1; gtpases, N-termin 98.7 5.1E-08 1.7E-12 89.7 8.6 106 304-411 23-139 (198)
102 1r8s_A ADP-ribosylation factor 98.7 3.9E-08 1.3E-12 86.2 7.5 103 307-411 1-114 (164)
103 1u8z_A RAS-related protein RAL 98.7 6.3E-08 2.2E-12 84.6 8.8 120 305-427 3-141 (168)
104 1vg8_A RAS-related protein RAB 98.7 9.4E-08 3.2E-12 87.3 10.3 119 304-423 6-144 (207)
105 3con_A GTPase NRAS; structural 98.7 1.2E-07 4.2E-12 85.5 10.8 120 305-427 20-157 (190)
106 3oes_A GTPase rhebl1; small GT 98.6 1E-07 3.4E-12 87.4 10.1 122 304-427 22-161 (201)
107 2fh5_B SR-beta, signal recogni 98.6 8.4E-08 2.9E-12 88.6 9.6 120 304-426 5-145 (214)
108 3tr5_A RF-3, peptide chain rel 98.6 1.8E-08 6.1E-13 107.6 5.7 123 305-427 12-164 (528)
109 1zd9_A ADP-ribosylation factor 98.6 6.8E-08 2.3E-12 87.6 8.6 116 304-421 20-149 (188)
110 1svi_A GTP-binding protein YSX 98.6 1.2E-07 4.1E-12 85.8 10.3 119 177-298 71-193 (195)
111 3gj0_A GTP-binding nuclear pro 98.6 7.2E-08 2.5E-12 89.7 9.0 107 304-410 13-131 (221)
112 2a5j_A RAS-related protein RAB 98.6 2.2E-07 7.6E-12 84.3 12.0 123 305-427 20-158 (191)
113 2y8e_A RAB-protein 6, GH09086P 98.6 1.9E-07 6.7E-12 82.6 11.3 122 305-427 13-151 (179)
114 4djt_A GTP-binding nuclear pro 98.6 9.6E-08 3.3E-12 88.4 9.7 122 305-426 10-148 (218)
115 1z08_A RAS-related protein RAB 98.6 2E-07 6.7E-12 82.0 11.1 122 305-427 5-143 (170)
116 2erx_A GTP-binding protein DI- 98.6 6.5E-08 2.2E-12 85.0 7.9 121 305-427 2-141 (172)
117 3bc1_A RAS-related protein RAB 98.6 1.3E-07 4.4E-12 84.8 9.9 123 305-427 10-159 (195)
118 2bcg_Y Protein YP2, GTP-bindin 98.6 2.5E-07 8.5E-12 84.8 12.0 121 305-427 7-145 (206)
119 3q85_A GTP-binding protein REM 98.6 1.7E-07 5.9E-12 82.4 10.5 122 306-427 2-141 (169)
120 1ega_A Protein (GTP-binding pr 98.6 1.4E-08 4.9E-13 100.6 3.8 118 174-299 55-174 (301)
121 3pqc_A Probable GTP-binding pr 98.6 8.6E-08 2.9E-12 86.3 8.3 120 177-299 70-193 (195)
122 2bov_A RAla, RAS-related prote 98.6 1.4E-07 4.8E-12 85.9 9.8 121 304-427 12-151 (206)
123 1wms_A RAB-9, RAB9, RAS-relate 98.6 1.8E-07 6.2E-12 83.0 10.0 121 304-424 5-144 (177)
124 2p5s_A RAS and EF-hand domain 98.6 1.1E-07 3.8E-12 87.0 8.8 124 304-427 26-171 (199)
125 2a9k_A RAS-related protein RAL 98.6 1.4E-07 4.9E-12 84.1 9.1 120 305-427 17-155 (187)
126 2hxs_A RAB-26, RAS-related pro 98.6 2.5E-07 8.6E-12 82.1 10.6 124 304-427 4-147 (178)
127 2fn4_A P23, RAS-related protei 98.6 3E-07 1E-11 81.5 10.9 121 304-427 7-146 (181)
128 3cpj_B GTP-binding protein YPT 98.6 3.2E-07 1.1E-11 85.6 11.5 122 305-427 12-150 (223)
129 1ni3_A YCHF GTPase, YCHF GTP-b 98.6 3.9E-08 1.3E-12 101.3 5.5 62 304-365 18-99 (392)
130 2iwr_A Centaurin gamma 1; ANK 98.6 1.8E-07 6.1E-12 83.4 9.0 119 305-426 6-141 (178)
131 2atv_A RERG, RAS-like estrogen 98.6 3.5E-07 1.2E-11 83.3 10.9 144 304-448 26-190 (196)
132 1nrj_B SR-beta, signal recogni 98.5 1.5E-07 5.1E-12 87.1 8.3 104 304-411 10-133 (218)
133 2fu5_C RAS-related protein RAB 98.5 1.7E-07 5.7E-12 84.0 8.3 122 305-427 7-145 (183)
134 1ky3_A GTP-binding protein YPT 98.5 1.4E-07 4.8E-12 83.8 7.7 121 304-424 6-148 (182)
135 2fv8_A H6, RHO-related GTP-bin 98.5 2.9E-07 1E-11 84.8 10.2 105 305-411 24-142 (207)
136 3p26_A Elongation factor 1 alp 98.5 7E-08 2.4E-12 101.7 6.7 108 303-410 30-183 (483)
137 3reg_A RHO-like small GTPase; 98.5 3.2E-07 1.1E-11 83.3 10.2 123 304-428 21-162 (194)
138 2dby_A GTP-binding protein; GD 98.5 2.8E-08 9.6E-13 101.5 3.4 73 307-380 2-110 (368)
139 2gco_A H9, RHO-related GTP-bin 98.5 2.6E-07 9E-12 84.7 9.6 106 305-412 24-143 (201)
140 1f5n_A Interferon-induced guan 98.5 7.6E-08 2.6E-12 103.9 6.8 62 304-365 36-105 (592)
141 2o52_A RAS-related protein RAB 98.5 3E-07 1E-11 84.4 10.0 122 304-427 23-162 (200)
142 3lvq_E ARF-GAP with SH3 domain 98.5 1.6E-07 5.3E-12 98.9 8.9 115 304-420 320-447 (497)
143 3llu_A RAS-related GTP-binding 98.5 3.6E-07 1.2E-11 83.4 9.9 108 304-411 18-142 (196)
144 1mh1_A RAC1; GTP-binding, GTPa 98.5 3.3E-07 1.1E-11 81.8 9.5 105 305-410 4-121 (186)
145 3t1o_A Gliding protein MGLA; G 98.5 4E-07 1.4E-11 81.9 10.1 124 304-427 12-165 (198)
146 3dz8_A RAS-related protein RAB 98.5 8.2E-08 2.8E-12 87.2 5.4 123 305-427 22-160 (191)
147 3izq_1 HBS1P, elongation facto 98.5 9.6E-08 3.3E-12 103.7 6.7 109 303-411 164-318 (611)
148 2atx_A Small GTP binding prote 98.5 1E-06 3.4E-11 79.8 12.5 106 305-412 17-136 (194)
149 2yc2_C IFT27, small RAB-relate 98.5 2.5E-07 8.5E-12 84.3 8.3 123 305-427 19-165 (208)
150 3o47_A ADP-ribosylation factor 98.5 4.3E-07 1.5E-11 91.0 10.7 116 304-421 163-291 (329)
151 3c5c_A RAS-like protein 12; GD 98.5 5.6E-07 1.9E-11 81.7 10.4 121 304-427 19-159 (187)
152 2gf0_A GTP-binding protein DI- 98.5 3.8E-07 1.3E-11 82.6 9.3 123 304-427 6-145 (199)
153 2www_A Methylmalonic aciduria 98.5 5.2E-08 1.8E-12 98.6 3.9 24 305-328 73-96 (349)
154 2j1l_A RHO-related GTP-binding 98.5 6.5E-07 2.2E-11 83.1 11.1 106 304-412 32-152 (214)
155 2il1_A RAB12; G-protein, GDP, 98.5 2.1E-07 7.1E-12 84.8 7.5 120 304-424 24-160 (192)
156 2hup_A RAS-related protein RAB 98.5 5.1E-07 1.7E-11 83.0 10.1 124 304-427 27-166 (201)
157 2q3h_A RAS homolog gene family 98.5 8.2E-07 2.8E-11 80.9 11.5 121 304-427 18-168 (201)
158 2bme_A RAB4A, RAS-related prot 98.5 3.7E-07 1.3E-11 81.8 8.8 122 305-427 9-147 (186)
159 2h5e_A Peptide chain release f 98.5 4.8E-07 1.6E-11 96.6 11.2 123 305-427 12-164 (529)
160 3l0i_B RAS-related protein RAB 98.5 1.5E-07 5.3E-12 86.0 6.3 103 305-410 32-150 (199)
161 2j0v_A RAC-like GTP-binding pr 98.5 4.8E-07 1.7E-11 83.3 9.7 121 305-427 8-153 (212)
162 2qu8_A Putative nucleolar GTP- 98.5 6.5E-07 2.2E-11 84.0 10.7 120 176-300 77-205 (228)
163 3sjy_A Translation initiation 98.5 3E-07 1E-11 94.6 8.9 122 177-313 77-207 (403)
164 4bas_A ADP-ribosylation factor 98.5 5.7E-07 2E-11 81.4 9.7 111 175-301 63-190 (199)
165 4gzl_A RAS-related C3 botulinu 98.4 4.1E-07 1.4E-11 83.9 8.6 105 304-410 28-146 (204)
166 1upt_A ARL1, ADP-ribosylation 98.4 3.5E-07 1.2E-11 80.5 7.8 89 209-299 71-168 (171)
167 3q3j_B RHO-related GTP-binding 98.4 7.2E-07 2.5E-11 83.0 10.3 121 305-427 26-175 (214)
168 1wb1_A Translation elongation 98.4 1.1E-07 3.6E-12 100.5 5.0 108 305-412 18-139 (482)
169 3mca_A HBS1, elongation factor 98.4 3.9E-08 1.3E-12 106.4 1.7 108 304-411 175-328 (592)
170 2ew1_A RAS-related protein RAB 98.4 5.6E-07 1.9E-11 83.2 9.2 122 305-427 25-163 (201)
171 2f7s_A C25KG, RAS-related prot 98.4 3.5E-07 1.2E-11 84.5 7.8 120 305-427 24-173 (217)
172 3izy_P Translation initiation 98.4 5.3E-08 1.8E-12 104.1 2.5 105 305-410 3-116 (537)
173 2c78_A Elongation factor TU-A; 98.4 2.1E-07 7.2E-12 95.7 6.7 110 304-413 9-143 (405)
174 3cph_A RAS-related protein SEC 98.4 2.5E-07 8.4E-12 84.9 6.5 112 176-301 70-183 (213)
175 1d2e_A Elongation factor TU (E 98.4 2.9E-07 9.8E-12 94.6 7.6 109 305-413 2-134 (397)
176 2xex_A Elongation factor G; GT 98.4 2E-07 7E-12 102.5 6.9 123 305-427 9-157 (693)
177 1zun_B Sulfate adenylate trans 98.4 3.6E-07 1.2E-11 94.9 8.0 108 304-411 22-170 (434)
178 3cb4_D GTP-binding protein LEP 98.4 2.4E-07 8.2E-12 100.3 6.2 138 175-329 71-216 (599)
179 1m7b_A RND3/RHOE small GTP-bin 98.4 1.7E-06 5.8E-11 77.9 10.8 105 305-411 6-124 (184)
180 3cbq_A GTP-binding protein REM 98.4 5.9E-07 2E-11 82.4 7.5 141 305-448 22-187 (195)
181 1r8s_A ADP-ribosylation factor 98.4 9.5E-07 3.3E-11 77.2 8.5 89 208-298 63-160 (164)
182 3sjy_A Translation initiation 98.4 4.1E-07 1.4E-11 93.5 7.1 108 304-411 6-142 (403)
183 2dyk_A GTP-binding protein; GT 98.4 3.8E-07 1.3E-11 79.4 5.8 109 177-297 51-159 (161)
184 2elf_A Protein translation elo 98.4 2.6E-07 8.8E-12 94.4 5.4 93 308-410 23-125 (370)
185 1gwn_A RHO-related GTP-binding 98.4 1.5E-06 5.1E-11 80.5 10.0 105 305-411 27-145 (205)
186 3bc1_A RAS-related protein RAB 98.4 4.6E-07 1.6E-11 81.2 6.3 95 206-300 87-185 (195)
187 3dpu_A RAB family protein; roc 98.3 1.7E-06 5.8E-11 92.1 11.6 125 284-410 13-162 (535)
188 1moz_A ARL1, ADP-ribosylation 98.3 1.5E-06 5E-11 77.6 9.4 89 209-299 82-179 (183)
189 1wb1_A Translation elongation 98.3 1.4E-06 4.7E-11 92.0 10.3 111 175-301 73-190 (482)
190 1zj6_A ADP-ribosylation factor 98.3 2.8E-06 9.6E-11 76.5 10.9 109 175-299 60-177 (187)
191 1ksh_A ARF-like protein 2; sma 98.3 8.8E-07 3E-11 79.5 7.5 108 176-299 63-179 (186)
192 2h57_A ADP-ribosylation factor 98.3 8E-07 2.7E-11 80.4 6.9 89 208-298 86-185 (190)
193 1zo1_I IF2, translation initia 98.3 2.1E-07 7.2E-12 98.7 3.4 105 305-410 3-115 (501)
194 2f7s_A C25KG, RAS-related prot 98.3 1.2E-06 4E-11 80.9 8.0 92 206-299 101-198 (217)
195 3ihw_A Centg3; RAS, centaurin, 98.3 2E-06 6.8E-11 78.0 9.3 120 304-426 18-152 (184)
196 2cjw_A GTP-binding protein GEM 98.3 8.7E-07 3E-11 81.1 6.9 106 305-410 5-126 (192)
197 3t34_A Dynamin-related protein 98.3 1.5E-06 5.1E-11 87.8 9.2 25 307-331 35-59 (360)
198 3reg_A RHO-like small GTPase; 98.3 4.7E-07 1.6E-11 82.2 4.8 91 209-299 91-187 (194)
199 1g16_A RAS-related protein SEC 98.3 9.7E-07 3.3E-11 77.4 6.7 93 208-300 71-165 (170)
200 2h17_A ADP-ribosylation factor 98.3 1.8E-06 6.2E-11 77.5 8.6 87 208-296 84-179 (181)
201 3t5g_A GTP-binding protein RHE 98.3 4.7E-07 1.6E-11 80.8 4.6 101 209-321 74-180 (181)
202 2gf0_A GTP-binding protein DI- 98.3 8.7E-07 3E-11 80.2 6.4 91 209-299 76-170 (199)
203 1udx_A The GTP-binding protein 98.3 1.7E-06 5.8E-11 89.7 9.4 102 307-412 158-283 (416)
204 2g6b_A RAS-related protein RAB 98.3 6.8E-07 2.3E-11 79.4 5.6 93 207-299 78-173 (180)
205 3cb4_D GTP-binding protein LEP 98.3 7.8E-07 2.7E-11 96.3 7.0 122 306-427 4-153 (599)
206 1mh1_A RAC1; GTP-binding, GTPa 98.3 6E-07 2E-11 80.1 5.2 91 209-299 73-179 (186)
207 1dar_A EF-G, elongation factor 98.3 1.2E-06 4.3E-11 96.3 8.8 123 305-427 11-159 (691)
208 3bwd_D RAC-like GTP-binding pr 98.3 6.3E-07 2.1E-11 79.8 5.2 121 304-427 6-154 (182)
209 1z0j_A RAB-22, RAS-related pro 98.3 9.5E-07 3.2E-11 77.4 6.3 91 208-298 74-167 (170)
210 3gee_A MNME, tRNA modification 98.3 1.3E-06 4.3E-11 92.2 8.2 115 176-299 282-397 (476)
211 3tkl_A RAS-related protein RAB 98.3 1.6E-06 5.4E-11 78.2 7.9 94 208-301 84-180 (196)
212 1zd9_A ADP-ribosylation factor 98.3 1E-06 3.5E-11 79.8 6.5 89 208-298 86-183 (188)
213 3bwd_D RAC-like GTP-binding pr 98.3 5.9E-07 2E-11 80.0 4.8 90 209-298 76-179 (182)
214 1vg8_A RAS-related protein RAB 98.3 1.1E-06 3.6E-11 80.3 6.6 91 209-299 77-174 (207)
215 1z0f_A RAB14, member RAS oncog 98.3 1.2E-06 4.1E-11 77.4 6.6 92 207-298 82-176 (179)
216 2ce2_X GTPase HRAS; signaling 98.3 1.5E-06 5.2E-11 75.3 7.1 90 208-299 70-164 (166)
217 2rdo_7 EF-G, elongation factor 98.3 2.5E-06 8.7E-11 94.0 10.5 123 305-427 9-164 (704)
218 1g7s_A Translation initiation 98.2 5.8E-07 2E-11 97.2 5.2 104 305-410 4-134 (594)
219 1z2a_A RAS-related protein RAB 98.2 1E-06 3.4E-11 77.1 5.9 91 208-298 73-165 (168)
220 2efe_B Small GTP-binding prote 98.2 1.4E-06 4.8E-11 77.4 6.9 89 208-298 80-173 (181)
221 1kk1_A EIF2gamma; initiation o 98.2 7.8E-07 2.7E-11 91.6 5.9 108 304-412 8-151 (410)
222 1wms_A RAB-9, RAB9, RAS-relate 98.2 1.5E-06 5.1E-11 77.0 6.9 92 208-299 75-173 (177)
223 3t1o_A Gliding protein MGLA; G 98.2 2.2E-06 7.7E-11 76.9 8.1 92 208-300 93-192 (198)
224 2zej_A Dardarin, leucine-rich 98.2 1.6E-06 5.3E-11 78.4 7.1 142 306-447 2-176 (184)
225 3con_A GTPase NRAS; structural 98.2 1E-06 3.5E-11 79.4 5.8 91 208-300 88-183 (190)
226 2yc2_C IFT27, small RAB-relate 98.2 9.3E-07 3.2E-11 80.4 5.5 108 176-299 74-191 (208)
227 1s0u_A EIF-2-gamma, translatio 98.2 1.5E-06 5E-11 89.6 7.5 106 304-410 6-147 (408)
228 1f60_A Elongation factor EEF1A 98.2 2.6E-07 8.9E-12 96.8 1.9 108 304-411 5-158 (458)
229 3dz8_A RAS-related protein RAB 98.2 1.5E-06 5.3E-11 78.6 6.7 94 206-299 89-185 (191)
230 2x77_A ADP-ribosylation factor 98.2 1.7E-06 5.9E-11 77.9 6.8 90 209-300 86-184 (189)
231 2hup_A RAS-related protein RAB 98.2 2.3E-06 8E-11 78.5 7.9 95 207-301 96-194 (201)
232 2ywe_A GTP-binding protein LEP 98.2 8.2E-07 2.8E-11 96.1 5.5 122 306-427 6-155 (600)
233 1zbd_A Rabphilin-3A; G protein 98.2 1.2E-06 4E-11 80.0 5.8 91 207-299 75-170 (203)
234 1kk1_A EIF2gamma; initiation o 98.2 3.1E-06 1.1E-10 87.1 9.4 109 177-300 85-200 (410)
235 2il1_A RAB12; G-protein, GDP, 98.2 1.7E-06 5.8E-11 78.7 6.6 92 207-298 93-188 (192)
236 1jny_A EF-1-alpha, elongation 98.2 1E-06 3.5E-11 91.6 5.7 107 304-410 4-156 (435)
237 2gco_A H9, RHO-related GTP-bin 98.2 2.1E-06 7.3E-11 78.6 7.2 90 209-298 93-198 (201)
238 2wkq_A NPH1-1, RAS-related C3 98.2 7.5E-06 2.6E-10 80.2 11.3 104 304-410 153-271 (332)
239 1u8z_A RAS-related protein RAL 98.2 1.3E-06 4.5E-11 76.0 5.2 88 208-298 71-165 (168)
240 2y8e_A RAB-protein 6, GH09086P 98.2 1.6E-06 5.4E-11 76.6 5.8 90 208-298 82-175 (179)
241 2j1l_A RHO-related GTP-binding 98.2 1.7E-06 6E-11 80.2 6.3 91 209-299 102-208 (214)
242 2atx_A Small GTP binding prote 98.2 1.3E-06 4.5E-11 79.0 5.3 90 209-298 86-191 (194)
243 2gj8_A MNME, tRNA modification 98.2 1.6E-06 5.5E-11 77.7 5.4 90 204-299 75-165 (172)
244 2bcg_Y Protein YP2, GTP-bindin 98.2 2.8E-06 9.7E-11 77.7 7.1 90 209-300 77-171 (206)
245 2erx_A GTP-binding protein DI- 98.2 1.4E-06 4.8E-11 76.3 4.9 91 208-298 70-165 (172)
246 4gzl_A RAS-related C3 botulinu 98.2 1.3E-06 4.6E-11 80.3 4.9 88 209-296 98-201 (204)
247 2a9k_A RAS-related protein RAL 98.2 1.7E-06 5.8E-11 77.0 5.5 89 208-299 85-180 (187)
248 2g3y_A GTP-binding protein GEM 98.2 4.8E-06 1.6E-10 78.1 8.7 122 305-427 36-177 (211)
249 2bme_A RAB4A, RAS-related prot 98.1 1.7E-06 5.9E-11 77.3 5.4 95 206-300 76-173 (186)
250 1z06_A RAS-related protein RAB 98.1 2.2E-06 7.6E-11 77.3 6.0 91 208-298 89-186 (189)
251 3clv_A RAB5 protein, putative; 98.1 4.5E-06 1.5E-10 74.9 8.0 90 207-299 111-203 (208)
252 2lkc_A Translation initiation 98.1 4.8E-06 1.7E-10 73.7 8.1 89 209-300 75-171 (178)
253 3tw8_B RAS-related protein RAB 98.1 1.9E-06 6.4E-11 76.3 5.3 90 209-300 78-171 (181)
254 1fzq_A ADP-ribosylation factor 98.1 2.2E-06 7.4E-11 77.3 5.7 89 208-298 79-176 (181)
255 4djt_A GTP-binding nuclear pro 98.1 4.6E-06 1.6E-10 77.0 8.1 92 209-300 81-175 (218)
256 2q3h_A RAS homolog gene family 98.1 2E-06 6.9E-11 78.2 5.6 92 209-300 88-195 (201)
257 1ek0_A Protein (GTP-binding pr 98.1 1.6E-06 5.4E-11 75.9 4.6 89 207-297 70-166 (170)
258 2fg5_A RAB-22B, RAS-related pr 98.1 2.8E-06 9.5E-11 77.1 6.4 89 208-298 91-184 (192)
259 2e87_A Hypothetical protein PH 98.1 8E-06 2.7E-10 82.5 10.4 90 210-300 244-336 (357)
260 1r2q_A RAS-related protein RAB 98.1 2.5E-06 8.5E-11 74.6 5.8 89 208-298 74-167 (170)
261 1ky3_A GTP-binding protein YPT 98.1 4.1E-06 1.4E-10 74.1 7.3 92 208-299 77-177 (182)
262 1c1y_A RAS-related protein RAP 98.1 5.3E-06 1.8E-10 72.3 7.9 91 208-298 70-165 (167)
263 4dsu_A GTPase KRAS, isoform 2B 98.1 4.2E-06 1.4E-10 74.7 7.3 91 208-300 71-166 (189)
264 2fv8_A H6, RHO-related GTP-bin 98.1 2.1E-06 7.1E-11 79.0 5.4 91 209-299 93-199 (207)
265 1xzp_A Probable tRNA modificat 98.1 5.1E-06 1.7E-10 87.7 9.1 88 205-298 316-403 (482)
266 3j2k_7 ERF3, eukaryotic polype 98.1 7.9E-06 2.7E-10 85.1 10.3 101 176-292 96-217 (439)
267 2gf9_A RAS-related protein RAB 98.1 3.8E-06 1.3E-10 75.8 6.9 93 208-300 90-185 (189)
268 3tr5_A RF-3, peptide chain rel 98.1 2E-06 6.9E-11 91.7 5.9 68 175-258 82-149 (528)
269 3iby_A Ferrous iron transport 98.1 2.7E-07 9.3E-12 89.3 -0.8 115 176-297 49-164 (256)
270 3q85_A GTP-binding protein REM 98.1 5.2E-06 1.8E-10 72.8 7.6 89 209-299 72-166 (169)
271 2b6h_A ADP-ribosylation factor 98.1 3.9E-06 1.3E-10 76.4 6.7 89 208-298 92-189 (192)
272 2qag_A Septin-2, protein NEDD5 98.1 5.7E-06 1.9E-10 84.0 8.6 60 304-363 35-107 (361)
273 1s0u_A EIF-2-gamma, translatio 98.1 3.5E-06 1.2E-10 86.7 7.0 109 177-300 83-198 (408)
274 3zvr_A Dynamin-1; hydrolase, D 98.1 1.6E-06 5.5E-11 96.0 4.8 120 175-300 150-281 (772)
275 3llu_A RAS-related GTP-binding 98.1 7.8E-06 2.7E-10 74.5 8.7 89 208-297 91-194 (196)
276 2cxx_A Probable GTP-binding pr 98.1 7.1E-06 2.4E-10 73.4 8.3 100 200-301 69-185 (190)
277 1lnz_A SPO0B-associated GTP-bi 98.1 2.9E-06 9.8E-11 85.8 6.2 116 176-300 207-330 (342)
278 1r5b_A Eukaryotic peptide chai 98.1 2.2E-06 7.5E-11 90.0 5.6 107 304-410 41-193 (467)
279 1jwy_B Dynamin A GTPase domain 98.1 2.7E-06 9.3E-11 83.5 5.9 121 175-300 131-262 (315)
280 2p5s_A RAS and EF-hand domain 98.1 1.9E-06 6.5E-11 78.6 4.4 92 207-298 95-195 (199)
281 3avx_A Elongation factor TS, e 98.1 5.8E-06 2E-10 94.9 9.1 124 304-427 294-447 (1289)
282 1m2o_B GTP-binding protein SAR 98.1 3.2E-06 1.1E-10 76.9 5.7 86 209-296 87-188 (190)
283 2f9l_A RAB11B, member RAS onco 98.1 3.5E-05 1.2E-09 70.2 12.8 121 306-427 5-142 (199)
284 3th5_A RAS-related C3 botulinu 97.4 4.5E-07 1.5E-11 83.1 0.0 105 304-410 28-146 (204)
285 3p26_A Elongation factor 1 alp 98.1 4.9E-06 1.7E-10 87.6 8.0 101 174-289 110-227 (483)
286 2hxs_A RAB-26, RAS-related pro 98.1 3.8E-06 1.3E-10 74.4 6.0 92 208-299 75-172 (178)
287 3th5_A RAS-related C3 botulinu 97.3 4.7E-07 1.6E-11 83.0 0.0 88 209-296 98-201 (204)
288 3i8s_A Ferrous iron transport 98.1 3.4E-07 1.2E-11 89.2 -1.0 116 177-298 52-167 (274)
289 3kkq_A RAS-related protein M-R 98.1 4E-06 1.4E-10 74.8 6.1 91 209-299 86-181 (183)
290 3c5h_A Glucocorticoid receptor 98.1 1.2E-05 4.2E-10 77.2 9.7 88 211-298 161-253 (255)
291 2fn4_A P23, RAS-related protei 98.1 9.7E-06 3.3E-10 71.6 8.3 90 209-300 77-172 (181)
292 3vqt_A RF-3, peptide chain rel 98.1 1.4E-05 4.7E-10 85.7 10.9 123 305-427 30-182 (548)
293 1kao_A RAP2A; GTP-binding prot 98.0 1.6E-06 5.4E-11 75.4 2.9 90 208-299 70-165 (167)
294 3q72_A GTP-binding protein RAD 98.0 6.3E-06 2.2E-10 72.1 6.8 89 209-299 69-163 (166)
295 3a1s_A Iron(II) transport prot 98.0 1.4E-06 4.8E-11 84.3 2.7 114 176-299 53-166 (258)
296 2fu5_C RAS-related protein RAB 98.0 5.3E-06 1.8E-10 74.0 6.2 91 208-300 76-171 (183)
297 2bov_A RAla, RAS-related prote 98.0 4.1E-06 1.4E-10 76.1 5.5 90 208-300 81-177 (206)
298 3geh_A MNME, tRNA modification 98.0 2.9E-06 1E-10 89.1 5.1 109 176-298 273-382 (462)
299 4dkx_A RAS-related protein RAB 98.0 1.6E-05 5.6E-10 74.8 9.7 122 305-427 12-150 (216)
300 2o52_A RAS-related protein RAB 98.0 6.9E-06 2.4E-10 75.2 6.8 89 208-299 93-187 (200)
301 2ywe_A GTP-binding protein LEP 98.0 6.9E-06 2.4E-10 88.9 7.8 110 175-301 73-185 (600)
302 2a5j_A RAS-related protein RAB 98.0 8.5E-06 2.9E-10 73.7 7.2 92 208-299 89-183 (191)
303 2nzj_A GTP-binding protein REM 98.0 6.6E-06 2.3E-10 72.4 6.3 91 208-300 73-169 (175)
304 1f6b_A SAR1; gtpases, N-termin 98.0 6.9E-06 2.4E-10 75.2 6.4 86 209-296 89-195 (198)
305 2wji_A Ferrous iron transport 98.0 1.3E-06 4.6E-11 77.4 1.5 79 211-297 80-162 (165)
306 2oil_A CATX-8, RAS-related pro 98.0 6.9E-06 2.4E-10 74.2 6.3 90 208-299 93-187 (193)
307 3p32_A Probable GTPase RV1496/ 98.0 3.6E-06 1.2E-10 85.0 4.9 104 173-299 170-283 (355)
308 3q3j_B RHO-related GTP-binding 98.0 2.9E-06 1E-10 78.9 3.9 91 209-299 95-202 (214)
309 2j0v_A RAC-like GTP-binding pr 98.0 3.3E-06 1.1E-10 77.6 4.1 92 209-300 77-180 (212)
310 1yrb_A ATP(GTP)binding protein 98.0 1.6E-05 5.4E-10 75.7 8.8 115 175-300 109-257 (262)
311 1z08_A RAS-related protein RAB 98.0 6.4E-06 2.2E-10 72.2 5.5 89 209-299 75-168 (170)
312 1n0u_A EF-2, elongation factor 98.0 3.5E-06 1.2E-10 94.6 4.8 106 305-410 18-162 (842)
313 2c78_A Elongation factor TU-A; 98.0 4.7E-06 1.6E-10 85.6 5.0 108 176-299 76-211 (405)
314 3cpj_B GTP-binding protein YPT 98.0 4.5E-06 1.6E-10 77.7 4.5 90 209-300 82-176 (223)
315 2ew1_A RAS-related protein RAB 98.0 4.5E-06 1.5E-10 77.1 4.4 94 207-300 93-189 (201)
316 2dy1_A Elongation factor G; tr 98.0 1.4E-05 4.9E-10 87.4 9.0 122 305-426 8-154 (665)
317 2elf_A Protein translation elo 97.9 1.8E-05 6.3E-10 80.6 8.9 107 176-300 61-180 (370)
318 3lvq_E ARF-GAP with SH3 domain 97.9 8.1E-06 2.8E-10 85.8 6.3 89 208-298 385-482 (497)
319 1g7s_A Translation initiation 97.9 1.4E-05 4.9E-10 86.3 8.3 108 177-300 72-218 (594)
320 1oix_A RAS-related protein RAB 97.9 5.3E-05 1.8E-09 68.9 10.9 121 306-427 29-166 (191)
321 3p32_A Probable GTPase RV1496/ 97.9 5.5E-06 1.9E-10 83.7 4.7 24 304-327 77-100 (355)
322 3ihw_A Centg3; RAS, centaurin, 97.9 1.2E-05 4.3E-10 72.6 6.5 89 209-299 82-179 (184)
323 2xtp_A GTPase IMAP family memb 97.9 3.3E-06 1.1E-10 80.8 2.7 120 176-300 72-208 (260)
324 2fh5_B SR-beta, signal recogni 97.9 2.4E-05 8.2E-10 71.8 8.4 88 209-297 75-213 (214)
325 2atv_A RERG, RAS-like estrogen 97.9 1.3E-05 4.6E-10 72.6 6.5 92 208-299 94-190 (196)
326 1m7b_A RND3/RHOE small GTP-bin 97.9 3.7E-06 1.2E-10 75.7 2.7 90 209-298 75-181 (184)
327 2iwr_A Centaurin gamma 1; ANK 97.9 1.5E-05 5E-10 70.8 6.5 89 209-299 69-168 (178)
328 2wkq_A NPH1-1, RAS-related C3 97.9 5.5E-06 1.9E-10 81.2 3.9 90 209-298 223-328 (332)
329 3b1v_A Ferrous iron uptake tra 97.9 2E-06 7E-11 84.0 0.6 113 176-298 50-162 (272)
330 3k53_A Ferrous iron transport 97.9 3.7E-06 1.3E-10 81.4 2.4 113 177-299 52-165 (271)
331 1zun_B Sulfate adenylate trans 97.9 2.2E-05 7.4E-10 81.5 8.3 98 177-289 106-213 (434)
332 3t5d_A Septin-7; GTP-binding p 97.9 4.6E-06 1.6E-10 80.9 3.0 83 213-298 116-202 (274)
333 3o47_A ADP-ribosylation factor 97.9 1.7E-05 5.8E-10 79.3 7.2 90 207-298 227-325 (329)
334 3gj0_A GTP-binding nuclear pro 97.9 7.2E-06 2.5E-10 76.0 4.1 90 209-299 84-174 (221)
335 3qq5_A Small GTP-binding prote 97.9 9.8E-06 3.4E-10 84.2 5.3 111 177-299 85-195 (423)
336 1d2e_A Elongation factor TU (E 97.9 1.7E-05 5.8E-10 81.3 7.0 109 176-300 67-195 (397)
337 2aka_B Dynamin-1; fusion prote 97.9 6.5E-06 2.2E-10 79.9 3.6 119 175-299 125-252 (299)
338 3cbq_A GTP-binding protein REM 97.9 3.6E-05 1.2E-09 70.4 8.4 90 209-300 93-188 (195)
339 2wsm_A Hydrogenase expression/ 97.8 1.6E-05 5.5E-10 73.5 5.4 127 289-422 16-182 (221)
340 2wjg_A FEOB, ferrous iron tran 97.8 8.5E-06 2.9E-10 73.0 3.2 84 211-299 84-168 (188)
341 2p67_A LAO/AO transport system 97.8 1.4E-05 4.7E-10 80.4 4.8 76 304-379 54-179 (341)
342 3oes_A GTPase rhebl1; small GT 97.8 2.5E-05 8.4E-10 71.3 5.7 91 209-301 92-188 (201)
343 2qag_C Septin-7; cell cycle, c 97.8 3.9E-05 1.3E-09 79.5 7.8 58 305-363 30-100 (418)
344 2qm8_A GTPase/ATPase; G protei 97.8 2.4E-05 8.2E-10 78.7 5.9 24 304-327 53-76 (337)
345 1tq4_A IIGP1, interferon-induc 97.7 0.00027 9.2E-09 73.1 13.6 116 289-407 53-184 (413)
346 2j69_A Bacterial dynamin-like 97.7 2.5E-05 8.7E-10 85.9 6.2 110 177-299 176-324 (695)
347 1gwn_A RHO-related GTP-binding 97.7 1.1E-05 3.8E-10 74.6 2.7 90 209-298 96-202 (205)
348 3izy_P Translation initiation 97.7 1E-05 3.5E-10 86.4 2.5 132 176-323 53-211 (537)
349 1jny_A EF-1-alpha, elongation 97.7 7.3E-05 2.5E-09 77.5 8.9 99 175-288 84-201 (435)
350 3mca_A HBS1, elongation factor 97.7 1E-05 3.5E-10 87.5 2.4 109 175-299 255-396 (592)
351 3j25_A Tetracycline resistance 97.7 1.2E-05 4.2E-10 87.5 3.0 119 308-426 4-148 (638)
352 2qag_B Septin-6, protein NEDD5 97.7 9.8E-05 3.3E-09 76.7 9.6 59 306-364 42-108 (427)
353 2qtf_A Protein HFLX, GTP-bindi 97.7 0.00016 5.5E-09 73.5 10.6 98 203-300 248-354 (364)
354 3q5d_A Atlastin-1; G protein, 97.7 3.7E-05 1.3E-09 80.3 5.8 24 306-329 67-90 (447)
355 2p67_A LAO/AO transport system 97.7 5.7E-05 1.9E-09 75.9 6.9 103 174-299 148-260 (341)
356 3lxw_A GTPase IMAP family memb 97.6 6.4E-05 2.2E-09 71.9 6.8 124 175-301 70-209 (247)
357 2zej_A Dardarin, leucine-rich 97.6 6.3E-05 2.2E-09 67.6 6.3 90 209-299 76-177 (184)
358 3avx_A Elongation factor TS, e 97.6 0.00011 3.7E-09 84.5 9.2 95 203-299 373-485 (1289)
359 3sop_A Neuronal-specific septi 97.6 0.00011 3.6E-09 71.7 7.9 59 306-364 2-73 (270)
360 1dar_A EF-G, elongation factor 97.6 7.9E-05 2.7E-09 81.9 7.7 68 175-258 77-144 (691)
361 2x2e_A Dynamin-1; nitration, h 97.6 5.7E-05 1.9E-09 76.1 6.0 117 175-297 130-255 (353)
362 3c5c_A RAS-like protein 12; GD 97.6 3.6E-05 1.2E-09 69.5 4.1 89 208-298 87-184 (187)
363 3izq_1 HBS1P, elongation facto 97.6 3.7E-05 1.3E-09 83.4 4.9 101 175-290 245-362 (611)
364 3dpu_A RAB family protein; roc 97.6 6.3E-05 2.2E-09 79.9 6.2 89 209-299 118-207 (535)
365 4fn5_A EF-G 1, elongation fact 97.6 0.0001 3.5E-09 81.2 8.1 121 307-427 14-167 (709)
366 2www_A Methylmalonic aciduria 97.6 0.00011 3.8E-09 74.1 7.5 103 174-299 166-278 (349)
367 3c5h_A Glucocorticoid receptor 97.6 5.1E-05 1.7E-09 72.8 4.7 26 304-329 17-51 (255)
368 1r5b_A Eukaryotic peptide chai 97.5 0.00019 6.5E-09 75.2 9.1 98 176-289 122-241 (467)
369 2xex_A Elongation factor G; GT 97.5 5.6E-05 1.9E-09 83.1 5.1 69 174-258 74-142 (693)
370 3l0i_B RAS-related protein RAB 97.5 1.3E-05 4.4E-10 73.0 -0.1 88 209-298 102-194 (199)
371 4dkx_A RAS-related protein RAB 97.5 0.00013 4.6E-09 68.5 6.6 88 209-298 82-174 (216)
372 2g3y_A GTP-binding protein GEM 97.5 0.00011 3.8E-09 68.7 5.8 91 210-300 109-203 (211)
373 1zo1_I IF2, translation initia 97.5 3.9E-05 1.3E-09 81.3 3.0 105 176-296 52-163 (501)
374 2j37_W Signal recognition part 97.5 0.00018 6.3E-09 76.2 8.0 112 305-419 100-261 (504)
375 1f60_A Elongation factor EEF1A 97.5 3.6E-05 1.2E-09 80.5 2.5 97 176-288 86-200 (458)
376 3vqt_A RF-3, peptide chain rel 97.5 0.00021 7E-09 76.6 8.3 69 173-257 98-166 (548)
377 2h5e_A Peptide chain release f 97.5 9.7E-05 3.3E-09 78.8 5.7 68 175-258 82-149 (529)
378 1pui_A ENGB, probable GTP-bind 97.4 0.00074 2.5E-08 61.4 10.8 93 205-299 101-198 (210)
379 2dy1_A Elongation factor G; tr 97.4 0.00023 7.7E-09 77.9 8.0 51 204-256 89-139 (665)
380 1yrb_A ATP(GTP)binding protein 97.4 7.1E-05 2.4E-09 71.1 3.4 35 305-339 13-52 (262)
381 2rdo_7 EF-G, elongation factor 97.3 0.00037 1.3E-08 76.7 8.9 67 175-257 82-148 (704)
382 2cjw_A GTP-binding protein GEM 97.3 0.00033 1.1E-08 63.7 6.8 90 210-299 78-171 (192)
383 1wxq_A GTP-binding protein; st 97.3 4.3E-05 1.5E-09 78.6 1.0 48 243-291 214-261 (397)
384 2hf9_A Probable hydrogenase ni 97.3 0.00066 2.3E-08 62.7 8.3 25 305-329 37-61 (226)
385 3r7w_A Gtpase1, GTP-binding pr 97.3 0.0007 2.4E-08 66.8 8.8 110 175-294 52-175 (307)
386 2qnr_A Septin-2, protein NEDD5 97.2 0.00021 7.1E-09 70.6 4.8 58 305-362 17-87 (301)
387 3lxx_A GTPase IMAP family memb 97.2 0.00045 1.6E-08 65.0 6.7 121 176-300 79-214 (239)
388 2wsm_A Hydrogenase expression/ 97.2 0.00035 1.2E-08 64.4 5.7 81 212-298 129-212 (221)
389 3j25_A Tetracycline resistance 97.2 0.00025 8.7E-09 77.2 4.9 68 173-256 65-132 (638)
390 2qpt_A EH domain-containing pr 97.1 0.00014 4.9E-09 77.8 2.7 88 176-268 155-243 (550)
391 3r7w_B Gtpase2, GTP-binding pr 97.1 0.0023 7.9E-08 64.2 10.7 106 308-413 1-121 (331)
392 2qm8_A GTPase/ATPase; G protei 97.1 0.00084 2.9E-08 67.3 7.4 104 173-299 146-260 (337)
393 1udx_A The GTP-binding protein 96.9 0.0032 1.1E-07 65.1 10.2 92 207-300 230-325 (416)
394 2v3c_C SRP54, signal recogniti 96.9 0.0016 5.5E-08 67.6 7.5 118 306-426 99-265 (432)
395 4fn5_A EF-G 1, elongation fact 96.8 0.0021 7.2E-08 70.7 8.6 67 174-256 84-150 (709)
396 1nrj_B SR-beta, signal recogni 96.8 0.0015 5.1E-08 59.8 6.3 72 176-260 56-137 (218)
397 2f9l_A RAB11B, member RAS onco 96.7 0.0029 9.8E-08 57.3 7.3 91 209-299 74-167 (199)
398 2ged_A SR-beta, signal recogni 96.7 0.00076 2.6E-08 60.4 3.0 83 175-269 91-182 (193)
399 3t34_A Dynamin-related protein 96.6 0.00076 2.6E-08 67.8 3.0 112 176-291 137-252 (360)
400 3l82_B F-box only protein 4; T 96.6 0.005 1.7E-07 58.2 8.0 95 200-297 116-220 (227)
401 2qag_A Septin-2, protein NEDD5 96.3 0.0022 7.4E-08 64.9 4.1 75 213-291 146-224 (361)
402 2hf9_A Probable hydrogenase ni 96.3 0.0063 2.1E-07 56.0 6.6 81 213-299 140-223 (226)
403 1cip_A Protein (guanine nucleo 96.3 0.0024 8.3E-08 64.5 4.1 91 209-299 213-343 (353)
404 3dm5_A SRP54, signal recogniti 96.1 0.016 5.4E-07 60.4 9.5 23 305-327 99-121 (443)
405 1oix_A RAS-related protein RAB 96.1 0.0087 3E-07 54.0 6.7 89 209-297 98-189 (191)
406 1h65_A Chloroplast outer envel 96.1 0.0059 2E-07 58.6 5.8 77 176-259 88-170 (270)
407 3szr_A Interferon-induced GTP- 95.9 0.019 6.5E-07 62.0 9.4 23 308-330 47-69 (608)
408 1zcb_A G alpha I/13; GTP-bindi 95.9 0.0071 2.4E-07 61.3 5.4 91 208-298 220-351 (362)
409 3l2o_B F-box only protein 4; s 95.8 0.029 1E-06 55.4 9.2 96 200-298 201-306 (312)
410 4ido_A Atlastin-1; GTPase, GTP 95.8 0.0096 3.3E-07 62.1 6.0 60 307-366 68-155 (457)
411 3r7w_B Gtpase2, GTP-binding pr 95.7 0.015 5.2E-07 58.2 6.7 85 209-294 69-168 (331)
412 1n0u_A EF-2, elongation factor 95.6 0.0026 8.9E-08 71.4 0.8 65 176-256 99-163 (842)
413 2qnr_A Septin-2, protein NEDD5 95.5 0.028 9.5E-07 55.2 7.6 94 212-314 126-223 (301)
414 1ko7_A HPR kinase/phosphatase; 95.4 0.016 5.6E-07 57.6 5.9 84 243-331 79-169 (314)
415 3c8u_A Fructokinase; YP_612366 95.2 0.013 4.5E-07 53.8 4.0 40 289-329 6-45 (208)
416 3ney_A 55 kDa erythrocyte memb 95.1 0.01 3.4E-07 55.1 2.9 57 306-362 19-77 (197)
417 3def_A T7I23.11 protein; chlor 94.9 0.022 7.5E-07 54.3 5.0 76 176-258 85-166 (262)
418 2qag_C Septin-7; cell cycle, c 94.8 0.013 4.5E-07 60.5 3.1 82 212-297 138-224 (418)
419 2xtz_A Guanine nucleotide-bind 94.7 0.024 8.2E-07 57.2 4.8 90 209-298 203-343 (354)
420 1kgd_A CASK, peripheral plasma 94.5 0.015 5.2E-07 52.2 2.4 24 307-330 6-29 (180)
421 4a9a_A Ribosome-interacting GT 94.4 0.0082 2.8E-07 61.2 0.4 114 123-256 79-195 (376)
422 1rz3_A Hypothetical protein rb 94.1 0.056 1.9E-06 49.3 5.5 40 289-328 5-44 (201)
423 3kl4_A SRP54, signal recogniti 94.0 0.1 3.6E-06 54.0 7.8 23 305-327 96-118 (433)
424 1azs_C GS-alpha; complex (lyas 93.9 0.072 2.5E-06 54.7 6.3 90 209-298 237-383 (402)
425 1zp6_A Hypothetical protein AT 93.9 0.037 1.3E-06 49.4 3.6 25 305-329 8-32 (191)
426 2xxa_A Signal recognition part 93.7 0.28 9.6E-06 50.7 10.4 23 305-327 99-121 (433)
427 1ye8_A Protein THEP1, hypothet 93.7 0.03 1E-06 50.7 2.6 22 308-329 2-23 (178)
428 2dby_A GTP-binding protein; GD 93.6 0.11 3.6E-06 52.8 6.9 43 175-224 69-111 (368)
429 3ec2_A DNA replication protein 93.6 0.056 1.9E-06 48.0 4.3 42 287-328 19-60 (180)
430 1lvg_A Guanylate kinase, GMP k 93.5 0.028 9.6E-07 51.4 2.2 23 307-329 5-27 (198)
431 2j37_W Signal recognition part 93.4 0.15 5.1E-06 53.9 7.9 107 174-297 183-310 (504)
432 3ohm_A Guanine nucleotide-bind 93.3 0.075 2.6E-06 53.0 5.2 90 208-298 186-316 (327)
433 2qor_A Guanylate kinase; phosp 93.3 0.029 9.9E-07 51.2 1.9 25 305-329 11-35 (204)
434 4fid_A G protein alpha subunit 93.3 0.069 2.4E-06 53.6 4.8 50 208-257 180-242 (340)
435 3tau_A Guanylate kinase, GMP k 93.1 0.05 1.7E-06 49.9 3.3 25 306-330 8-32 (208)
436 3tr0_A Guanylate kinase, GMP k 92.8 0.052 1.8E-06 48.9 2.9 24 306-329 7-30 (205)
437 1znw_A Guanylate kinase, GMP k 92.8 0.044 1.5E-06 50.2 2.4 24 306-329 20-43 (207)
438 1odf_A YGR205W, hypothetical 3 92.7 0.12 4E-06 50.6 5.5 26 303-328 28-53 (290)
439 3asz_A Uridine kinase; cytidin 92.5 0.061 2.1E-06 48.9 3.0 25 305-329 5-29 (211)
440 2j41_A Guanylate kinase; GMP, 92.5 0.062 2.1E-06 48.4 2.9 25 306-330 6-30 (207)
441 1z6g_A Guanylate kinase; struc 92.4 0.053 1.8E-06 50.3 2.4 24 306-329 23-46 (218)
442 4gp7_A Metallophosphoesterase; 92.2 0.068 2.3E-06 47.5 2.8 22 306-327 9-30 (171)
443 3a00_A Guanylate kinase, GMP k 92.2 0.056 1.9E-06 48.6 2.3 23 308-330 3-25 (186)
444 3lw7_A Adenylate kinase relate 92.1 0.072 2.4E-06 46.0 2.8 19 308-326 3-21 (179)
445 2pcj_A ABC transporter, lipopr 92.0 0.077 2.6E-06 49.7 3.0 24 307-330 31-54 (224)
446 1sq5_A Pantothenate kinase; P- 92.0 0.12 4E-06 50.7 4.4 25 304-328 78-102 (308)
447 1kag_A SKI, shikimate kinase I 91.9 0.079 2.7E-06 46.4 2.8 23 307-329 5-27 (173)
448 3tqc_A Pantothenate kinase; bi 91.8 0.12 4.2E-06 51.3 4.4 39 290-328 76-114 (321)
449 3tif_A Uncharacterized ABC tra 91.8 0.08 2.7E-06 50.0 2.9 25 306-330 31-55 (235)
450 2bdt_A BH3686; alpha-beta prot 91.8 0.07 2.4E-06 47.7 2.4 21 308-328 4-24 (189)
451 1ly1_A Polynucleotide kinase; 91.8 0.096 3.3E-06 45.8 3.2 22 307-328 3-24 (181)
452 1ex7_A Guanylate kinase; subst 91.7 0.07 2.4E-06 48.9 2.3 34 309-342 4-38 (186)
453 3kb2_A SPBC2 prophage-derived 91.6 0.086 2.9E-06 45.8 2.7 21 308-328 3-23 (173)
454 4eun_A Thermoresistant glucoki 91.6 0.087 3E-06 47.8 2.8 24 305-328 28-51 (200)
455 1s96_A Guanylate kinase, GMP k 91.5 0.084 2.9E-06 49.4 2.7 26 305-330 15-40 (219)
456 1knq_A Gluconate kinase; ALFA/ 91.4 0.097 3.3E-06 46.0 2.9 23 306-328 8-30 (175)
457 2rhm_A Putative kinase; P-loop 91.4 0.12 4.1E-06 45.9 3.5 23 306-328 5-27 (193)
458 1np6_A Molybdopterin-guanine d 91.4 0.095 3.3E-06 47.4 2.8 22 308-329 8-29 (174)
459 3cm0_A Adenylate kinase; ATP-b 91.2 0.11 3.9E-06 45.9 3.1 23 306-328 4-26 (186)
460 1g6h_A High-affinity branched- 91.2 0.1 3.5E-06 49.9 2.9 25 306-330 33-57 (257)
461 1b0u_A Histidine permease; ABC 91.1 0.1 3.6E-06 50.0 2.9 24 307-330 33-56 (262)
462 2if2_A Dephospho-COA kinase; a 91.1 0.1 3.5E-06 47.1 2.7 21 308-328 3-23 (204)
463 2onk_A Molybdate/tungstate ABC 91.1 0.11 3.7E-06 49.4 2.9 23 308-330 26-48 (240)
464 1jjv_A Dephospho-COA kinase; P 91.0 0.13 4.3E-06 46.6 3.3 22 307-328 3-24 (206)
465 2ff7_A Alpha-hemolysin translo 91.0 0.11 3.8E-06 49.4 2.9 25 306-330 35-59 (247)
466 1qhx_A CPT, protein (chloramph 91.0 0.12 4.2E-06 45.3 3.1 22 307-328 4-25 (178)
467 2qt1_A Nicotinamide riboside k 91.0 0.15 5E-06 46.3 3.7 25 305-329 20-44 (207)
468 1sgw_A Putative ABC transporte 91.0 0.11 3.8E-06 48.4 2.9 23 308-330 37-59 (214)
469 2bbw_A Adenylate kinase 4, AK4 91.0 0.13 4.4E-06 48.2 3.4 26 306-331 27-55 (246)
470 2cbz_A Multidrug resistance-as 90.9 0.13 4.6E-06 48.5 3.5 25 306-330 31-55 (237)
471 4g1u_C Hemin import ATP-bindin 90.9 0.11 3.8E-06 50.0 2.9 25 306-330 37-61 (266)
472 2pze_A Cystic fibrosis transme 90.9 0.11 3.9E-06 48.7 2.9 25 306-330 34-58 (229)
473 1cke_A CK, MSSA, protein (cyti 90.9 0.12 4.2E-06 47.2 3.1 23 306-328 5-27 (227)
474 1nks_A Adenylate kinase; therm 90.8 0.12 4.1E-06 45.7 2.8 21 308-328 3-23 (194)
475 2f1r_A Molybdopterin-guanine d 90.8 0.063 2.2E-06 48.4 1.0 22 308-329 4-25 (171)
476 2d2e_A SUFC protein; ABC-ATPas 90.8 0.12 4E-06 49.3 2.9 23 307-329 30-52 (250)
477 1kht_A Adenylate kinase; phosp 90.8 0.13 4.5E-06 45.4 3.1 22 307-328 4-25 (192)
478 3gfo_A Cobalt import ATP-bindi 90.8 0.12 4E-06 50.3 2.9 24 307-330 35-58 (275)
479 3uie_A Adenylyl-sulfate kinase 90.8 0.13 4.3E-06 46.7 3.0 24 305-328 24-47 (200)
480 1nn5_A Similar to deoxythymidy 90.7 0.15 5E-06 46.2 3.4 24 305-328 8-31 (215)
481 1ji0_A ABC transporter; ATP bi 90.7 0.12 4.2E-06 48.8 2.9 24 307-330 33-56 (240)
482 2jaq_A Deoxyguanosine kinase; 90.7 0.13 4.5E-06 45.9 3.0 21 308-328 2-22 (205)
483 2wwf_A Thymidilate kinase, put 90.7 0.15 5.1E-06 46.1 3.4 24 305-328 9-32 (212)
484 2v9p_A Replication protein E1; 90.6 0.12 3.9E-06 51.2 2.8 24 305-328 125-148 (305)
485 2olj_A Amino acid ABC transpor 90.6 0.12 4.2E-06 49.7 2.9 25 306-330 50-74 (263)
486 1mv5_A LMRA, multidrug resista 90.5 0.18 6.1E-06 47.7 3.9 25 306-330 28-52 (243)
487 1vpl_A ABC transporter, ATP-bi 90.5 0.13 4.4E-06 49.4 2.9 25 306-330 41-65 (256)
488 2plr_A DTMP kinase, probable t 90.5 0.15 5.2E-06 45.8 3.3 23 306-328 4-26 (213)
489 2zu0_C Probable ATP-dependent 90.5 0.13 4.4E-06 49.6 2.9 24 306-329 46-69 (267)
490 2qi9_C Vitamin B12 import ATP- 90.5 0.13 4.4E-06 49.1 2.9 25 307-331 27-51 (249)
491 3t61_A Gluconokinase; PSI-biol 90.4 0.13 4.4E-06 46.5 2.8 23 306-328 18-40 (202)
492 2ixe_A Antigen peptide transpo 90.4 0.13 4.5E-06 49.6 2.9 25 306-330 45-69 (271)
493 2yz2_A Putative ABC transporte 90.3 0.14 4.7E-06 49.3 2.9 25 306-330 33-57 (266)
494 1y63_A LMAJ004144AAA protein; 90.2 0.16 5.6E-06 45.4 3.2 25 305-329 9-33 (184)
495 3aez_A Pantothenate kinase; tr 90.2 0.14 4.7E-06 50.6 3.0 25 304-328 88-112 (312)
496 1aky_A Adenylate kinase; ATP:A 90.2 0.16 5.5E-06 46.6 3.2 24 305-328 3-26 (220)
497 3b85_A Phosphate starvation-in 90.2 0.11 3.7E-06 48.3 2.0 24 306-329 22-45 (208)
498 2cdn_A Adenylate kinase; phosp 90.1 0.18 6.2E-06 45.5 3.5 25 304-328 18-42 (201)
499 2v54_A DTMP kinase, thymidylat 90.1 0.17 5.8E-06 45.4 3.3 24 306-329 4-27 (204)
500 2ghi_A Transport protein; mult 90.1 0.17 5.8E-06 48.5 3.5 25 306-330 46-70 (260)
No 1
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-45 Score=363.74 Aligned_cols=257 Identities=25% Similarity=0.329 Sum_probs=208.1
Q ss_pred ccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCee
Q 012726 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSL 275 (457)
Q Consensus 196 ~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~ 275 (457)
+||+.++++++++.++++|+|++|+|||+|.+++++.+++++ .++|.++|+||+||++.+..+.|.+++.+.. ..
T Consensus 7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g-~~ 81 (282)
T 1puj_A 7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL----KNKPRIMLLNKADKADAAVTQQWKEHFENQG-IR 81 (282)
T ss_dssp --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTT-CC
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH----CCCCEEEEEECcccCCHHHHHHHHHHHHhcC-Cc
Confidence 788899999999999999999999999999999999998887 3799999999999999888889999986532 24
Q ss_pred EEEeeccCCCChHHHHHHHHHHHHhhc--------CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE
Q 012726 276 AFHASINKSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI 347 (457)
Q Consensus 276 ~f~iSa~~~~Gi~~Li~~L~~~~~~~~--------~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~ 347 (457)
++.+||.++.|+++|++.+.++++... ....++|+++|+||||||||||+|++...+.+++.||+|++.+++
T Consensus 82 ~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~ 161 (282)
T 1puj_A 82 SLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWV 161 (282)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCE
T ss_pred EEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEE
Confidence 556799999999999999988876431 235689999999999999999999999999999999999999988
Q ss_pred EcCCcEEEEecCCcccCCCCCc---cceEEEeccccCCc--ccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHH
Q 012726 348 TLTKRIFLIDCPGVVYQNKDSE---TDIVLKGVVRVTNL--EDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQL 421 (457)
Q Consensus 348 ~~~~~i~liDtPGi~~~~~~~e---~dlvL~gvv~~~~l--~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~l 421 (457)
.++..+.|+||||+..+....+ ..+++.+++..+.+ .+...++.+.|.++.+..|...|+++++ ++..|||+.+
T Consensus 162 ~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~l~~~y~~~~~~~~~~~~l~~~ 241 (282)
T 1puj_A 162 KVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPERLKERYGLDEIPEDIAELFDAI 241 (282)
T ss_dssp EETTTEEEEECCCCCCSCCCCHHHHHHHHHHTSSCTTSSCHHHHHHHHHHHHHHHCHHHHHHHTTCSSCCSSHHHHHHHH
T ss_pred EeCCCEEEEECcCcCCCCCCCHHHHHHHHHhCCcchhhCCHHHHHHHHHHHHHHhChHHHHHHcCCCCCCCCHHHHHHHH
Confidence 8888999999999998865432 23455566644333 4455677888888888899999999865 6889999999
Q ss_pred HHHcCCcccCCcccHHHHHHHHHHHHHhchhcCCCC
Q 012726 422 CKSTGKLLRVCLFLHFISWYLFFYDHITNLASVGHL 457 (457)
Q Consensus 422 a~r~g~l~kgg~pD~~~aa~~~l~d~~~g~~~~~~~ 457 (457)
|+++|++.|||+||+++||+.||+||++|++|.-||
T Consensus 242 a~~~g~~~kgg~~d~~~aa~~~l~d~~~Gklg~~~l 277 (282)
T 1puj_A 242 GEKRGCLMSGGLINYDKTTEVIIRDIRTEKFGRLSF 277 (282)
T ss_dssp HHHHTCBCSTTCBCHHHHHHHHHHHHHTTTTCSCCS
T ss_pred HHHhCCcccCCcccHHHHHHHHHHHHHcCCCCceEC
Confidence 999999999999999999999999999999987664
No 2
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=100.00 E-value=2.4e-41 Score=331.82 Aligned_cols=239 Identities=23% Similarity=0.293 Sum_probs=186.4
Q ss_pred ccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhc-CCe
Q 012726 196 KGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE-YPS 274 (457)
Q Consensus 196 ~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~-~p~ 274 (457)
+||+.++++++++.++++|+||+|+|||+|.+++++.++ ++ ++|.|+|+||+||++.+..+.|++++.+. +++
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll-----~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v 78 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS-----RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV 78 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT-----TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc-----CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE
Confidence 788899999999999999999999999999999987776 54 69999999999999988888999999764 443
Q ss_pred eEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEE
Q 012726 275 LAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIF 354 (457)
Q Consensus 275 ~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~ 354 (457)
.+||.++.|+++|++.|.+.+ ++++++|.||||||||||+|.+...+.+++.||+|+..+.+.++.++.
T Consensus 79 ---~iSa~~~~gi~~L~~~l~~~~--------~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~ 147 (262)
T 3cnl_A 79 ---ITTHKGEPRKVLLKKLSFDRL--------ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLENGVK 147 (262)
T ss_dssp ---EECCTTSCHHHHHHHHCCCTT--------CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEECTTSCE
T ss_pred ---EEECCCCcCHHHHHHHHHHhh--------hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEeCCCEE
Confidence 579999999998888775332 689999999999999999999999889999999999988888888999
Q ss_pred EEecCCcccCCC-CCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHHcCCcccCCc
Q 012726 355 LIDCPGVVYQNK-DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGKLLRVCL 433 (457)
Q Consensus 355 liDtPGi~~~~~-~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r~g~l~kgg~ 433 (457)
|+||||+..+.. .++... .....+..+...++.+.|.+..+..+...|+++. .+ .+||+.+|+++|++.|||+
T Consensus 148 l~DtpG~~~~~~~~~~~~~----~~~~~d~~~~~~~~~~~l~~~~~~~l~~~y~i~~-~d-~~~l~~ia~~~g~~~kgg~ 221 (262)
T 3cnl_A 148 ILDTPGILYKNIFSEDLAA----KLLLVGSLPVERIEDQRIFERAFEIFARSIGIES-SF-SEFFEDFARKRGLLKKGGV 221 (262)
T ss_dssp EESSCEECCCCCCSHHHHH----HHHHTTSSCGGGCCCHHHHHHHHHHHHHHHTCCC-CH-HHHHHHHHHHTTCBCGGGC
T ss_pred EEECCCcccCcCCCChhhc----ccccCCHHHHHHHHHHHHHHhCHHHHHHHcCcCC-Cc-HHHHHHHHHHhCCccCCCc
Confidence 999999998764 321111 1111122334445556666666778888999974 44 8999999999999999999
Q ss_pred ccHHHHHHHHHHHHHhchhcCCCC
Q 012726 434 FLHFISWYLFFYDHITNLASVGHL 457 (457)
Q Consensus 434 pD~~~aa~~~l~d~~~g~~~~~~~ 457 (457)
||+++||+.||+||++|++|.=||
T Consensus 222 ~d~~~aa~~~l~d~~~g~l~~~~l 245 (262)
T 3cnl_A 222 PDIERALMLFFTEVAQGKAGRVSF 245 (262)
T ss_dssp BCHHHHHHHHHHHHHTTTTCSCCS
T ss_pred ccHHHHHHHHHHHHHcCCCCceEC
Confidence 999999999999999999987554
No 3
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.94 E-value=2.6e-27 Score=242.81 Aligned_cols=238 Identities=22% Similarity=0.263 Sum_probs=152.5
Q ss_pred HhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH
Q 012726 160 ADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE 239 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~ 239 (457)
...|+|||.+.||+..+.+....+.|+ +.+..+.+.+|+||+|+|+++|.++..+.+.+++.
T Consensus 36 ~~~C~RC~~l~hy~~~~~v~~~~e~f~-----------------~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l~- 97 (369)
T 3ec1_A 36 EVICQRCFRLKHYNEVQDVPLDDDDFL-----------------SMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFAA- 97 (369)
T ss_dssp -----------------------CHHH-----------------HHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHCT-
T ss_pred CEEchhHHHhhccccccCCcCCHHHHH-----------------HHHHHhhccCcEEEEEEECCCCCCchhhHHHHHhC-
Confidence 356999999999999776543322232 22333457889999999999999888888877753
Q ss_pred hcCCCcEEEEeecCCCCChh----hHHHHHHHHHhcCC---eeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEEe
Q 012726 240 HCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGFV 312 (457)
Q Consensus 240 ~~~~K~vIlVLNKiDLvp~~----~~~~wl~~l~~~~p---~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vv 312 (457)
++|+|+|+||+||++.+ ....|+..+.+... ..++.+||.+++|+++|++.|.++. ...+|+++
T Consensus 98 ---~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~------~~~~i~~v 168 (369)
T 3ec1_A 98 ---DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR------EGGDVYVV 168 (369)
T ss_dssp ---TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH------TTSCEEEE
T ss_pred ---CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc------ccCcEEEE
Confidence 78999999999999763 45677765433322 3677899999999999999998775 24679999
Q ss_pred ecCCCchHHHHHHHhCC-----CCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------------Cccce
Q 012726 313 GYPNVGKSSVINTLRTK-----NVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD---------------SETDI 372 (457)
Q Consensus 313 G~pNvGKSSliN~L~~~-----~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~---------------~e~dl 372 (457)
|.||||||||||+|++. ....+++.||+|+....+.++.++.|+||||+..+... .+.+.
T Consensus 169 G~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~ 248 (369)
T 3ec1_A 169 GCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHP 248 (369)
T ss_dssp CCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCC
T ss_pred cCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCc
Confidence 99999999999999987 66789999999999999998888999999999876421 12333
Q ss_pred EEEecccc-----CCcccHHHHHHHHHHhcCcceehhhcCCCCC--CCHHHHHHHHHHHcCCcc
Q 012726 373 VLKGVVRV-----TNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW--VDENDFLLQLCKSTGKLL 429 (457)
Q Consensus 373 vL~gvv~~-----~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~--~~~~efL~~la~r~g~l~ 429 (457)
++..+... ..+.. .+.|...+.+.+...++.|.. ...+...+.+.+..|.+.
T Consensus 249 ~~~~l~~~~~~~~g~l~~-----l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l 307 (369)
T 3ec1_A 249 RVYQLNEGQTLFFGGLAR-----LDYIKGGRRSFVCYMANELTVHRTKLEKADSLYANQLGELL 307 (369)
T ss_dssp EEEEECTTEEEEETTTEE-----EEEEESSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTB
T ss_pred eEEEEcCCceEEECCEEE-----EEEccCCCceEEEEecCCcccccccHHHHHHHHHHhcCCcc
Confidence 34323221 11110 111223345677778887752 223445555666666554
No 4
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.94 E-value=7.9e-27 Score=239.16 Aligned_cols=244 Identities=23% Similarity=0.241 Sum_probs=147.3
Q ss_pred HHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHH
Q 012726 159 RADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLK 238 (457)
Q Consensus 159 ~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~ 238 (457)
....|||||.+.||+..+.+..+.+.| + +.+..+...+|+||+|+|+++|..+..+.+.+++
T Consensus 33 ~~~~C~Rc~~l~hy~~~~~v~~~~e~f--------------~---~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~- 94 (368)
T 3h2y_A 33 EQVICQRCFRLKHYNEIQDVSLTDDDF--------------L---RILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV- 94 (368)
T ss_dssp -----------------------CHHH--------------H---HHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS-
T ss_pred CCcEEhhhhhhhccCccccCCCCHHHH--------------H---HHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh-
Confidence 345699999999999977654333223 2 2233345577899999999998766666666654
Q ss_pred HhcCCCcEEEEeecCCCCChh----hHHHHHHHHHhcCC---eeEEEeeccCCCChHHHHHHHHHHHHhhcCccceEEEE
Q 012726 239 EHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLKSDKQAISVGF 311 (457)
Q Consensus 239 ~~~~~K~vIlVLNKiDLvp~~----~~~~wl~~l~~~~p---~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~v 311 (457)
.++|+|+|+||+||++.. ....|+..+.+... ..++.+||.++.|+++|++.|.++. ...+|++
T Consensus 95 ---~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~------~~~~i~~ 165 (368)
T 3h2y_A 95 ---GNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR------GGKDVYV 165 (368)
T ss_dssp ---SSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH------TTSCEEE
T ss_pred ---CCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc------ccceEEE
Confidence 379999999999998764 45677765544332 3677889999999999999998765 2467999
Q ss_pred eecCCCchHHHHHHHhCC------CCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------------Ccc
Q 012726 312 VGYPNVGKSSVINTLRTK------NVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD---------------SET 370 (457)
Q Consensus 312 vG~pNvGKSSliN~L~~~------~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~---------------~e~ 370 (457)
+|.||||||||||+|++. ....+++.||+|+..+.+.++..+.|+||||+..+... .+.
T Consensus 166 vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i 245 (368)
T 3h2y_A 166 VGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEI 245 (368)
T ss_dssp EEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCC
T ss_pred ecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhcccccc
Confidence 999999999999999985 25568999999999998888888999999999876421 122
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC--CCHHHHHHHHHHHcCCcc
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW--VDENDFLLQLCKSTGKLL 429 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~--~~~~efL~~la~r~g~l~ 429 (457)
+..+..+.....+..-.....+.|...+.+.+...++.|.. ...+...+.+.+..|.+.
T Consensus 246 ~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l 306 (368)
T 3h2y_A 246 KPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLL 306 (368)
T ss_dssp CCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTB
T ss_pred CceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccccHHHHHHHHHHHhCCcc
Confidence 22333222210000000000112223345677888888752 345666777777877554
No 5
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=6.9e-23 Score=214.10 Aligned_cols=285 Identities=18% Similarity=0.221 Sum_probs=183.5
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
+++++.++..|+++.|.+. . .+++.... . ..+.|.....+.....+.||+|+.....+.+ ..++
T Consensus 8 G~pnvGKStL~nrl~~~~~----~--~v~~~~g~---T--~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~-----~~~~ 71 (439)
T 1mky_A 8 GRPNVGKSTLFNKLVKKKK----A--IVEDEEGV---T--RDPVQDTVEWYGKTFKLVDTCGVFDNPQDII-----SQKM 71 (439)
T ss_dssp CCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCC-----CHHH
T ss_pred CCCCCCHHHHHHHHhCCCC----c--eecCCCCC---c--cceeeEEEEECCeEEEEEECCCccccccchH-----HHHH
Confidence 5778888999999887431 0 01111100 0 0011111111222345689999863221111 2567
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..++..+++.+|+||+|+|++++++..+..+.+++... ++|+++|+||+|+........+.+++ ...-...+.+||.
T Consensus 72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~--~~p~ilv~NK~D~~~~~~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 72 KEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKS--TVDTILVANKAENLREFEREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp HHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHG-GGSSCSCEECBTT
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc--CCCEEEEEeCCCCccccHHHHHHHHH-hcCCCCEEEEecc
Confidence 77888899999999999999998877777788887753 79999999999986431111112332 2221235788999
Q ss_pred CCCChHHHHHHHHHHHHhhc--------CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CC
Q 012726 283 KSFGKGSLLSVLRQFARLKS--------DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TK 351 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~--------~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~ 351 (457)
+|.|+++|++.|.+.++... ....++|+++|.||||||||+|+|++.....+++.||+|++... +.+ +.
T Consensus 149 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp TTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred CCCCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 99999999999988887532 12358999999999999999999999988889999999987542 233 45
Q ss_pred cEEEEecCCcccCCC------C-----------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC--
Q 012726 352 RIFLIDCPGVVYQNK------D-----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-- 412 (457)
Q Consensus 352 ~i~liDtPGi~~~~~------~-----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~-- 412 (457)
.+.++||||+..... . ..+++++.+++...........+...+...+.+.+.+.|++|-.+
T Consensus 229 ~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 229 KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHR 308 (439)
T ss_dssp EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTG
T ss_pred EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCch
Confidence 789999999843211 0 135677765555555554455677778888889999999998533
Q ss_pred --CHHHHHHHHHHHcC
Q 012726 413 --DENDFLLQLCKSTG 426 (457)
Q Consensus 413 --~~~efL~~la~r~g 426 (457)
+.+++.+.++++.+
T Consensus 309 ~~~~~~~~~~~~~~~~ 324 (439)
T 1mky_A 309 EKRYDEFTKLFREKLY 324 (439)
T ss_dssp GGCHHHHHHHHHHHCG
T ss_pred hhHHHHHHHHHHHHhc
Confidence 24556666666654
No 6
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.1e-22 Score=212.35 Aligned_cols=282 Identities=16% Similarity=0.185 Sum_probs=174.5
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
+++++.++..|+.+.|... .. +.+.... ...+.|.....+.....+.||+|+...... -..++
T Consensus 10 G~~nvGKStL~n~l~~~~~-----~~-v~~~~g~-----T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~------~~~~~ 72 (436)
T 2hjg_A 10 GRPNVGKSTIFNRIAGERI-----SI-VEDTPGV-----TRDRIYSSAEWLNYDFNLIDTGGIDIGDEP------FLAQI 72 (436)
T ss_dssp CSTTSSHHHHHHHHEEEEC-----C-----------------CEEEECTTCSSCCEEEC---------C------HHHHH
T ss_pred CCCCCCHHHHHHHHhCCCc-----ee-ecCCCCC-----ccceEEEEEEECCceEEEEECCCCCCcchh------HHHHH
Confidence 5678888888888887321 00 1111100 011112222223344567899998522111 12566
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+...+++.+|+||+|+|++++.+..+..+.+++.. .++|+|+|+||+|+.+... ...+++ +......+.+||.
T Consensus 73 ~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~--~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~ 147 (436)
T 2hjg_A 73 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGT 147 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTT--CCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTT
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCc
Confidence 6777888999999999999999887766667776654 4799999999999975421 111112 1111246788999
Q ss_pred CCCChHHHHHHHHHHHHhhc----CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EE-cCCcEEE
Q 012726 283 KSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--IT-LTKRIFL 355 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~----~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~-~~~~i~l 355 (457)
+|.|+++|++.|.+.++... +...++|+++|.||||||||+|+|++.....+++.||+|++... +. -+..+.|
T Consensus 148 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l 227 (436)
T 2hjg_A 148 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVI 227 (436)
T ss_dssp TTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEE
T ss_pred CCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEE
Confidence 99999999999988776432 22468999999999999999999999988889999999987632 22 2457999
Q ss_pred EecCCcccCCC-----C-----------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC--C--HH
Q 012726 356 IDCPGVVYQNK-----D-----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV--D--EN 415 (457)
Q Consensus 356 iDtPGi~~~~~-----~-----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~--~--~~ 415 (457)
+||||+..... + ..+|+++..++..+........+...+...+.+.+.+.||+|-.+ . .+
T Consensus 228 ~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~ 307 (436)
T 2hjg_A 228 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK 307 (436)
T ss_dssp TTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHH
T ss_pred EECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHH
Confidence 99999864332 1 246777776666665555445555566667788999999998432 2 35
Q ss_pred HHHHHHHHHcC
Q 012726 416 DFLLQLCKSTG 426 (457)
Q Consensus 416 efL~~la~r~g 426 (457)
++.+.+++...
T Consensus 308 ~~~~~~~~~l~ 318 (436)
T 2hjg_A 308 EFEENIRDHFQ 318 (436)
T ss_dssp HHHHHHHHHCG
T ss_pred HHHHHHHHhcc
Confidence 66677776653
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.87 E-value=1.3e-21 Score=205.37 Aligned_cols=304 Identities=15% Similarity=0.172 Sum_probs=190.2
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
++.++.++..|+.+.|... . .+.+.... ...+.|.............|++|+... .+ ....++
T Consensus 30 G~~nvGKSTL~n~l~~~~~----~--~v~~~~g~-----t~~~~~~~~~~~~~~~~liDT~G~~~~-~~-----~~~~~~ 92 (456)
T 4dcu_A 30 GRPNVGKSTIFNRIAGERI----S--IVEDTPGV-----TRDRIYSSAEWLNYDFNLIDTGGIDIG-DE-----PFLAQI 92 (456)
T ss_dssp CSSSSSHHHHHHHHEEEEE----C------------------CEEEECTTCSSCCEEECCCC------------CCHHHH
T ss_pred CCCCCcHHHHHHHHhCCCC----c--ccCCCCCc-----ceeEEEEEEEECCceEEEEECCCCCCc-ch-----HHHHHH
Confidence 5677888888888877321 0 01111000 011111112223334557899997521 11 123667
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..++..++..+|+||+|+|+++++...+..+.+++.. .++|+|+|+||+|+.... ..+.+++...+ ...+++||.
T Consensus 93 ~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~~~~--~~~~e~~~lg~-~~~~~iSA~ 167 (456)
T 4dcu_A 93 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNTEMR--ANIYDFYSLGF-GEPYPISGT 167 (456)
T ss_dssp HHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC-----------CCSGGGSS-SSEEECCTT
T ss_pred HHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccchhhh--hhHHHHHHcCC-CceEEeecc
Confidence 7788889999999999999999888777778888765 489999999999997532 12222222222 234688999
Q ss_pred CCCChHHHHHHHHHHHHhhc----CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EE-EcCCcEEE
Q 012726 283 KSFGKGSLLSVLRQFARLKS----DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YI-TLTKRIFL 355 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~----~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~-~~~~~i~l 355 (457)
++.|+++|++.+.+.++... ....++|+++|.||||||||+|+|++.....+++.||+|.+.. .+ .-+..+.|
T Consensus 168 ~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l 247 (456)
T 4dcu_A 168 HGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVI 247 (456)
T ss_dssp TCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEE
T ss_pred cccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEE
Confidence 99999999999987765322 2356899999999999999999999988888999999998642 22 23457999
Q ss_pred EecCCcccCCC-----C-----------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC----CHH
Q 012726 356 IDCPGVVYQNK-----D-----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV----DEN 415 (457)
Q Consensus 356 iDtPGi~~~~~-----~-----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~----~~~ 415 (457)
+||||+..... + ..+|+++..++..+.+.+....+...+...+.+.+.+.||+|-.. ..+
T Consensus 248 ~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~ 327 (456)
T 4dcu_A 248 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMK 327 (456)
T ss_dssp TTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHH
T ss_pred EECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHH
Confidence 99999865431 1 246788887777777777777777777778889999999998432 235
Q ss_pred HHHHHHHHHcCCc-----------ccCCcccHHHHHHHHHHHHH
Q 012726 416 DFLLQLCKSTGKL-----------LRVCLFLHFISWYLFFYDHI 448 (457)
Q Consensus 416 efL~~la~r~g~l-----------~kgg~pD~~~aa~~~l~d~~ 448 (457)
++.+.+....+.+ ..-|..++-.+....+..|.
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 371 (456)
T 4dcu_A 328 EFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHS 371 (456)
T ss_dssp HHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHHhc
Confidence 5555555553211 22355555555555554443
No 8
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.76 E-value=3.6e-19 Score=178.13 Aligned_cols=144 Identities=20% Similarity=0.221 Sum_probs=105.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhh----HHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA----TKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~----~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
+++++|+|++|+|+++|..+.+ .++++|.. +..++++++|+||+||++... +..|.++|....- .++.+|+.+
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~-~v~~~sa~~ 160 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGY-DVYLTSSKD 160 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTC-CEEECCHHH
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCC-eEEEEecCC
Confidence 7899999999999999998876 78888864 345899999999999998754 6789888865432 345579999
Q ss_pred CCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCC-------CceeEEEEEEcCCcEEEE
Q 012726 284 SFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP-------GETKVWQYITLTKRIFLI 356 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p-------g~T~~~~~~~~~~~i~li 356 (457)
+.|+++|++.+ .+-.++++|.+|||||||||+|.+.....++.++ ++|+..+.+.+. ..+++
T Consensus 161 ~~g~~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~ 229 (307)
T 1t9h_A 161 QDSLADIIPHF----------QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVA 229 (307)
T ss_dssp HTTCTTTGGGG----------TTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEE
T ss_pred CCCHHHHHhhc----------CCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcC-CEEEe
Confidence 99988776553 2457899999999999999999987665666554 466655555554 46899
Q ss_pred ecCCcccCC
Q 012726 357 DCPGVVYQN 365 (457)
Q Consensus 357 DtPGi~~~~ 365 (457)
||||+....
T Consensus 230 dtpg~~~~~ 238 (307)
T 1t9h_A 230 DTPGFSSLE 238 (307)
T ss_dssp SSCSCSSCC
T ss_pred cCCCccccc
Confidence 999997643
No 9
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.71 E-value=5.2e-17 Score=161.83 Aligned_cols=142 Identities=20% Similarity=0.260 Sum_probs=107.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhh---HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~---~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+.++|+||+|+|+++|..+. ..+++++.. ...++|+|+|+||+||++... ...|.+.+... ...++.+||+++
T Consensus 76 ~~~naD~vliV~d~~~p~~s~-~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~-g~~~~~~SA~~g 153 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNN-YLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDA-GYDVLKVSAKTG 153 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHT-TCEEEECCTTTC
T ss_pred HHHhcCEEEEEEECCCCCCCH-HHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHC-CCeEEEEECCCC
Confidence 689999999999999886443 356666653 235799999999999998652 56677766554 235678899999
Q ss_pred CChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-------ceeEEEEEEcCCcEEEEe
Q 012726 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-------ETKVWQYITLTKRIFLID 357 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-------~T~~~~~~~~~~~i~liD 357 (457)
.|+++|.+.+. +..++++|.+|||||||+|+|. .....++.+.. +|+..+.+......+++|
T Consensus 154 ~gi~~L~~~l~----------G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d 222 (302)
T 2yv5_A 154 EGIDELVDYLE----------GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGD 222 (302)
T ss_dssp TTHHHHHHHTT----------TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEES
T ss_pred CCHHHHHhhcc----------CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEE
Confidence 99998887753 3468999999999999999999 66556665543 566555555544568999
Q ss_pred cCCccc
Q 012726 358 CPGVVY 363 (457)
Q Consensus 358 tPGi~~ 363 (457)
|||+..
T Consensus 223 ~pg~~~ 228 (302)
T 2yv5_A 223 TPGFSK 228 (302)
T ss_dssp SCCCSS
T ss_pred CcCcCc
Confidence 999874
No 10
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.70 E-value=4.5e-17 Score=166.00 Aligned_cols=145 Identities=23% Similarity=0.230 Sum_probs=107.6
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhh---HHHHHHHHHhc-CCeeEEEe
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKE-YPSLAFHA 279 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~---~~~wl~~l~~~-~p~~~f~i 279 (457)
++..+++++|+|++| ||++|..+.+ .++++|.. +..++++|+|+||+||++.+. +..|+.+|... ++ ++.+
T Consensus 123 ~~~~i~anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~--v~~~ 198 (358)
T 2rcn_A 123 GVKPIAANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYR--VLMV 198 (358)
T ss_dssp -CEEEEECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCC--EEEC
T ss_pred HHHHHHhcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCc--EEEE
Confidence 344568999999954 8888876654 68888753 234799999999999998765 56798888664 44 5667
Q ss_pred eccCCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCC-ceecCCC---C----ceeEEEEEEcCC
Q 012726 280 SINKSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIP---G----ETKVWQYITLTK 351 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~p---g----~T~~~~~~~~~~ 351 (457)
|+.++.|++.|...+ .+-.++++|.+|||||||||+|.+... ..++.++ | +|+..+.+.+..
T Consensus 199 Sa~~~~gl~~L~~~~----------~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q 268 (358)
T 2rcn_A 199 SSHTQDGLKPLEEAL----------TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPH 268 (358)
T ss_dssp BTTTTBTHHHHHHHH----------TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTT
T ss_pred ecCCCcCHHHHHHhc----------CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECC
Confidence 999999998877643 234689999999999999999999766 5555443 3 455556667766
Q ss_pred cEEEEecCCccc
Q 012726 352 RIFLIDCPGVVY 363 (457)
Q Consensus 352 ~i~liDtPGi~~ 363 (457)
...++||||+..
T Consensus 269 ~~~l~dtpgv~e 280 (358)
T 2rcn_A 269 GGDVIDSPGVRE 280 (358)
T ss_dssp SCEEEECHHHHT
T ss_pred CCEecCcccHHH
Confidence 778999999975
No 11
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.68 E-value=2.3e-16 Score=157.00 Aligned_cols=143 Identities=19% Similarity=0.263 Sum_probs=103.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhh---HHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWA---TKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~---~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+.++|++|+|+|+++|..+. ..+.+++.. ...+.|+|+|+||+||.+... ...|.+.+... ...|.+||+++
T Consensus 81 ~~~~ad~vilV~D~~~~~~s~-~~l~~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~--~~~~~~SAktg 157 (301)
T 1u0l_A 81 HVANVDQVILVVTVKMPETST-YIIDKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGL--YPIVKTSAKTG 157 (301)
T ss_dssp TEESCCEEEEEECSSTTCCCH-HHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTT--SCEEECCTTTC
T ss_pred ccccCCEEEEEEeCCCCCCCH-HHHHHHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhh--CcEEEEECCCC
Confidence 678999999999999886443 355666643 124799999999999987644 45666665433 55778899999
Q ss_pred CChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-------ceeEEEEEEcCCcEEEEe
Q 012726 285 FGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-------ETKVWQYITLTKRIFLID 357 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-------~T~~~~~~~~~~~i~liD 357 (457)
.|+++|.+.+. +-.++++|.+|+|||||+|+|.+......+.+.. +|+..+.+.+....+++|
T Consensus 158 ~gv~~lf~~l~----------geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q 227 (301)
T 1u0l_A 158 MGIEELKEYLK----------GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVD 227 (301)
T ss_dssp TTHHHHHHHHS----------SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEES
T ss_pred cCHHHHHHHhc----------CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEE
Confidence 99999887763 3468999999999999999999976655555442 555444454444568999
Q ss_pred cCCcccC
Q 012726 358 CPGVVYQ 364 (457)
Q Consensus 358 tPGi~~~ 364 (457)
+||+...
T Consensus 228 ~p~~~~~ 234 (301)
T 1u0l_A 228 TPGFANL 234 (301)
T ss_dssp SCSSTTC
T ss_pred CcCCCcc
Confidence 9998654
No 12
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.62 E-value=7.5e-17 Score=163.93 Aligned_cols=198 Identities=19% Similarity=0.137 Sum_probs=135.7
Q ss_pred CEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHh-cCCeeEEEeeccCCCChHHHHH
Q 012726 214 DVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASINKSFGKGSLLS 292 (457)
Q Consensus 214 DvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~-~~p~~~f~iSa~~~~Gi~~Li~ 292 (457)
|.+-.|+|++.++++.++.+++++.....++|.+++|||+|+++......|.+++.. .++.....+++..+.+.+.+.+
T Consensus 59 ~~l~~i~~~~~~l~~~~p~~~~l~~~~~~~k~~~~~Lnk~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 138 (357)
T 2e87_A 59 DNLRKVLERTPGLSTLPKFYQELVDVLVDRDTFHKAMAGIDWAIRIIRELEERYVERIRYSNDPNEIAELRRQFYGRVAS 138 (357)
T ss_dssp HHHHHHHHHSCCGGGSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHH
Confidence 456677888888889999988887654457888999999999999988999999877 4333233334555556666655
Q ss_pred HHHHHHHhh--------------c-CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEE
Q 012726 293 VLRQFARLK--------------S-DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIF 354 (457)
Q Consensus 293 ~L~~~~~~~--------------~-~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~ 354 (457)
.+++..... . .....+|+++|+||||||||+|+|++.. ..++..|++|...+...+ +..+.
T Consensus 139 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~v~lvG~~gvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~ 217 (357)
T 2e87_A 139 VLRDIDDRLRYLNKAREVLKDLPVVDLEIPTVVIAGHPNVGKSTLLKALTTAK-PEIASYPFTTRGINVGQFEDGYFRYQ 217 (357)
T ss_dssp HHHHTHHHHHHHHHHHHHGGGSCCCCSSSCEEEEECSTTSSHHHHHHHHCSSC-CEEECCTTCSSCEEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCCCEEEEECCCCCCHHHHHHHHhCCC-CccCCCCCeeeceeEEEEEecCceEE
Confidence 544332210 1 2356899999999999999999999987 467888999987665443 24589
Q ss_pred EEecCCcccCCCC--------------CccceEEEeccccC----CcccHHHHHHHHHHhc-CcceehhhcCCCCCC
Q 012726 355 LIDCPGVVYQNKD--------------SETDIVLKGVVRVT----NLEDAAEHIGEVLKRV-KKEHLKRAYKIKDWV 412 (457)
Q Consensus 355 liDtPGi~~~~~~--------------~e~dlvL~gvv~~~----~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~ 412 (457)
++||||+...... ..+|.+|..++... .+.+....+..+.... +.+.+.+.+++|-..
T Consensus 218 l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~ 294 (357)
T 2e87_A 218 IIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD 294 (357)
T ss_dssp EEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC
T ss_pred EEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC
Confidence 9999999764321 13567776444222 1222233344444434 678899999998543
No 13
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.30 E-value=8e-12 Score=124.30 Aligned_cols=107 Identities=26% Similarity=0.270 Sum_probs=82.5
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--E-cCCcEEEEecCCcccCCC-------------CCc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--T-LTKRIFLIDCPGVVYQNK-------------DSE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~-~~~~i~liDtPGi~~~~~-------------~~e 369 (457)
...|+++|.||||||||+|+|++.+.+.+++.|++|+..... . -+.++.|+||||+..+.. -..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 356999999999999999999999988899999999764322 2 245789999999976431 146
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhc--CcceehhhcCCCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV 412 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~ 412 (457)
+|+++..++....+......+...+... +.+.+.+.||+|-..
T Consensus 87 ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~ 131 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAK 131 (301)
T ss_dssp CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCS
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCC
Confidence 7888887766666655556666777776 778999999998543
No 14
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.27 E-value=3.9e-12 Score=130.44 Aligned_cols=101 Identities=26% Similarity=0.293 Sum_probs=69.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-CCcEEEEecCCcccCCCC------------Cccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-TKRIFLIDCPGVVYQNKD------------SETD 371 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-~~~i~liDtPGi~~~~~~------------~e~d 371 (457)
.+|++||+||||||||+|+|++.. ..++++|+||++.... .. +.++.|+||||++..... .++|
T Consensus 73 a~V~ivG~PNvGKSTL~n~Lt~~~-~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad 151 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLSKLTGTE-SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCN 151 (376)
T ss_dssp EEEEEECCCCHHHHHHHHHHHSBC-CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCS
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcC
Confidence 589999999999999999999987 4789999999876543 22 568999999999875433 3578
Q ss_pred eEEEeccccCCcccHHHHHHHHHHhcC-----cceehhhcCCC
Q 012726 372 IVLKGVVRVTNLEDAAEHIGEVLKRVK-----KEHLKRAYKIK 409 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~~~i~~~L~~~~-----~~~l~~~y~i~ 409 (457)
+++..++..+.+ .....+...|.... ++.+...++++
T Consensus 152 ~il~vvD~~~p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d 193 (376)
T 4a9a_A 152 LLFIILDVNKPL-HHKQIIEKELEGVGIRLNKTPPDILIKKKE 193 (376)
T ss_dssp EEEEEEETTSHH-HHHHHHHHHHHHTTEEETCCCCCEEEEECS
T ss_pred ccccccccCccH-HHHHHHHHHHHHhhHhhccCChhhhhhHhh
Confidence 998866554333 22233444444432 34455556555
No 15
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.26 E-value=9.3e-12 Score=123.93 Aligned_cols=123 Identities=24% Similarity=0.351 Sum_probs=92.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec--CCcEEEEecCCcccCCCC------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL--TKRIFLIDCPGVVYQNKD------------ 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~--~~~i~liDtPGi~~~~~~------------ 367 (457)
.+.-.|+++|.||||||||+|+|++.+...+++.|++|+..... .. +.++.|+||||+..+...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 34567999999999999999999999998899999999864422 22 457999999999865410
Q ss_pred ---CccceEEEeccccCCcccHHHHH-HHHHHhcCcceehhhcCCCCC---CCHHHHHHHHHHHcC
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHI-GEVLKRVKKEHLKRAYKIKDW---VDENDFLLQLCKSTG 426 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i-~~~L~~~~~~~l~~~y~i~~~---~~~~efL~~la~r~g 426 (457)
..+|+++..++..+........+ ...+...+.+.+.+.|++|.. ....+.++.++...|
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~ 153 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHP 153 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhcc
Confidence 35788888666655554444455 666677778899999999854 234567777887775
No 16
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.25 E-value=3.9e-11 Score=109.09 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=78.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~--------------- 367 (457)
...++|+++|.+|||||||+|+|++.. ...+++.||+|.....+.++.++.|+||||+......
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 356899999999999999999999886 5678889999998888777889999999997654221
Q ss_pred ---CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCC--HHHHHHHHHHHc
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVD--ENDFLLQLCKST 425 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~--~~efL~~la~r~ 425 (457)
...++++..++...........+...+...+.+.+.+.+++|-... ..+..+.+.+..
T Consensus 101 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~ 163 (195)
T 1svi_A 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTL 163 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred hhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHH
Confidence 1226677655544445444455666777777889999999985432 334445555443
No 17
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.25 E-value=7.6e-12 Score=130.42 Aligned_cols=103 Identities=29% Similarity=0.310 Sum_probs=69.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE---cCCcEEEEecCCcccCC---CC-----------Ccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT---LTKRIFLIDCPGVVYQN---KD-----------SET 370 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~---~~-----------~e~ 370 (457)
+|++||.||||||||+|.|++...+.+++.||+|++..+.. .+..+.|+||||+.... .. .++
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~a 82 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA 82 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHhC
Confidence 68999999999999999999988878899999998754332 24578999999987531 11 468
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
|+++..++....++.....+..+|++.+++.+.+.||+|.
T Consensus 83 d~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~ 122 (439)
T 1mky_A 83 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN 122 (439)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 9999877666666666667788888888899999999985
No 18
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.24 E-value=6.3e-11 Score=107.16 Aligned_cols=107 Identities=24% Similarity=0.327 Sum_probs=85.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC-----------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD----------------- 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~----------------- 367 (457)
..++|+++|.+|||||||+|+|++.....+++.+|+|........+.++.++||||+......
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 101 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKN 101 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhc
Confidence 457899999999999999999999888788999999998888777889999999997543211
Q ss_pred -CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 368 -SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 368 -~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
..+++++..++...........+...+...+.+.+.+.+|+|-.
T Consensus 102 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 102 RWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKV 146 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGS
T ss_pred CcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcC
Confidence 12367777565555555555667777888888999999999854
No 19
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.24 E-value=1.6e-11 Score=114.32 Aligned_cols=108 Identities=20% Similarity=0.240 Sum_probs=84.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcC----CcEEEEecCCcccCCCC------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLT----KRIFLIDCPGVVYQNKD------------ 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~----~~i~liDtPGi~~~~~~------------ 367 (457)
..++|+++|.+|||||||+|+|++.. ...+++.||+|.......+. ..+.|+||||+......
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 46899999999999999999999987 56888999999987766654 58999999998654211
Q ss_pred ------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 368 ------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 368 ------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
..+|+++..++..+.+......+...+...+.+.+.+.+++|...
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~ 158 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT 158 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC
Confidence 125667776666566666666677777777888999999998543
No 20
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.23 E-value=3.6e-11 Score=119.34 Aligned_cols=121 Identities=20% Similarity=0.227 Sum_probs=88.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CCcEEEEecCCcc-cC-------------CCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TKRIFLIDCPGVV-YQ-------------NKDS 368 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~~i~liDtPGi~-~~-------------~~~~ 368 (457)
...|+++|.||||||||+|+|++.....+++.|++|+.... +.. +.++.++||||+. .+ ..-.
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~ 87 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG 87 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHHh
Confidence 45799999999999999999999988888899999975332 222 3478999999997 21 1114
Q ss_pred ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCHHH---HHHHHHHHcCC
Q 012726 369 ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDEND---FLLQLCKSTGK 427 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~e---fL~~la~r~g~ 427 (457)
.+|+++..+.... +......+...+...+.+.+...|++|...+..+ .++.++...|+
T Consensus 88 ~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 88 DVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred cCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 6788887565544 7666666777777777889999999997654443 45555555554
No 21
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.22 E-value=2.6e-11 Score=116.88 Aligned_cols=122 Identities=13% Similarity=0.075 Sum_probs=76.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCC-CceeEEEEE--E-cCCcEEEEecCCcccCCCC------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP-GETKVWQYI--T-LTKRIFLIDCPGVVYQNKD------------ 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p-g~T~~~~~~--~-~~~~i~liDtPGi~~~~~~------------ 367 (457)
...++|++||.||||||||+|+|++.....++..+ |+|...... . -+..+.|+||||+......
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~~ 98 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGHC 98 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHHH
Confidence 45799999999999999999999998876655433 577654322 2 2457999999999643211
Q ss_pred -----CccceEEEeccccCCcccHHHHHHHHHHhc------CcceehhhcCCCC-CCCHHHH--------HHHHHHHcC
Q 012726 368 -----SETDIVLKGVVRVTNLEDAAEHIGEVLKRV------KKEHLKRAYKIKD-WVDENDF--------LLQLCKSTG 426 (457)
Q Consensus 368 -----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~------~~~~l~~~y~i~~-~~~~~ef--------L~~la~r~g 426 (457)
..++++|..+ +...++.....+...+... +.+.+...+++|- ..+.+++ |..+..+.|
T Consensus 99 ~~~~~~~~d~il~V~-d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g 176 (247)
T 3lxw_A 99 YLLSAPGPHALLLVT-QLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECG 176 (247)
T ss_dssp HHHHTTCCSEEEEEE-ETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred HHhcCCCCCEEEEEE-eCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcC
Confidence 3456777744 4445655555555555543 4577888888873 2344433 456666666
No 22
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.19 E-value=1.3e-11 Score=128.45 Aligned_cols=104 Identities=28% Similarity=0.404 Sum_probs=68.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~e~ 370 (457)
.+|++||.||||||||+|+|++...+.+++.||+|++..+..+ +..+.|+||||+...... .++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999888889999999998876654 357999999999633211 367
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
|+++..++..+.++.....+..+|.+.+++.+.+.||+|.
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~ 123 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 123 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccC
Confidence 8888877766666666667778888888899999999984
No 23
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.17 E-value=1.9e-12 Score=132.17 Aligned_cols=198 Identities=20% Similarity=0.200 Sum_probs=98.6
Q ss_pred cccchHHHHHHHH--HhhhccCEEEEEeeCCCCCCC-C-CHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHh
Q 012726 195 EKGQSKRIWGELY--KVIDSSDVVVQVLDARDPQGT-R-CHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK 270 (457)
Q Consensus 195 ~~~~~kr~~~el~--k~I~~sDvIL~VvDardp~~s-~-~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~ 270 (457)
.+.|.+.+++.+. ++++..|+||+|+|+|.|..+ . ...+ ..+.. .+|.+ ..|...++.
T Consensus 67 ~p~q~~~l~~~~~~~~v~dr~~lil~i~~~ra~t~~~~~q~~l-a~l~~---~~~rl--------------~~~~~l~~~ 128 (364)
T 2qtf_A 67 KPRHFINIRRELKGKEVLDKILLLLEIFALHAGSKEAKMQIEL-ARLKY---ELPII--------------KETYTKSKI 128 (364)
T ss_dssp CHHHHHHHHHHHTTCEEECHHHHHHHHHHHHCCSHHHHHHHHH-HHHHH---HHHHH--------------HHC------
T ss_pred CHHHHHHHHHHhCCCceeehHhHHHHHHHhhCcccchhHHHHH-HHHhh---hchhh--------------hhhhHHHHh
Confidence 4556677888887 799999999999999998654 2 1222 22221 11111 244332222
Q ss_pred cCCeeEEEe------eccCCCC---hHHHHHHHHHHHHhh------cCccceE-EEEeecCCCchHHHHHHHhCCCCcee
Q 012726 271 EYPSLAFHA------SINKSFG---KGSLLSVLRQFARLK------SDKQAIS-VGFVGYPNVGKSSVINTLRTKNVCKV 334 (457)
Q Consensus 271 ~~p~~~f~i------Sa~~~~G---i~~Li~~L~~~~~~~------~~~~~i~-v~vvG~pNvGKSSliN~L~~~~~~~v 334 (457)
. ..+.|.- ....... +..|...|.+..... ..+.++. |+++|+||||||||+|+|++... .+
T Consensus 129 ~-~~i~~~g~ge~~~e~~~~~~~~~i~~l~~~l~~~~~~r~~~r~~r~~~~~~~V~lvG~~naGKSTLln~L~~~~~-~~ 206 (364)
T 2qtf_A 129 G-EQQGPLGAGTYGVESTIKFYKRRINKLMKELESIKIFKEKSIESNKRNNIPSIGIVGYTNSGKTSLFNSLTGLTQ-KV 206 (364)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHC-------------CCEEEEECBTTSSHHHHHHHHHCC-----
T ss_pred c-CCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcEEEEECCCCCCHHHHHHHHHCCCc-cc
Confidence 1 1111210 0000000 111112222111100 1123455 99999999999999999999875 67
Q ss_pred cCCCCceeEE--EEEEc-CCcEEEEecCCcccCCC-------------CCccceEEEeccccCCc---ccHHHHHHHHHH
Q 012726 335 APIPGETKVW--QYITL-TKRIFLIDCPGVVYQNK-------------DSETDIVLKGVVRVTNL---EDAAEHIGEVLK 395 (457)
Q Consensus 335 s~~pg~T~~~--~~~~~-~~~i~liDtPGi~~~~~-------------~~e~dlvL~gvv~~~~l---~~~~~~i~~~L~ 395 (457)
++.|++|.+. ..+.+ +..+.++||||++...+ -..+|+++..++..... ......+..+|.
T Consensus 207 ~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~ 286 (364)
T 2qtf_A 207 DTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILR 286 (364)
T ss_dssp -------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred cCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHH
Confidence 7889988654 34444 35789999999865321 13568888865543332 111223345566
Q ss_pred hc---CcceehhhcCCCCCC
Q 012726 396 RV---KKEHLKRAYKIKDWV 412 (457)
Q Consensus 396 ~~---~~~~l~~~y~i~~~~ 412 (457)
.+ ..+.+.+.|++|...
T Consensus 287 ~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 287 EIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp HHTCCSCCEEEEEECGGGCC
T ss_pred HhCcCCCCEEEEEECCCCCC
Confidence 54 457788899998544
No 24
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.14 E-value=3e-11 Score=126.57 Aligned_cols=105 Identities=28% Similarity=0.399 Sum_probs=72.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..+|++||.||||||||+|+|++...+.+++.||+|++..+... +..+.|+||||+...... .+
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 46899999999999999999999888889999999998877654 457999999998743221 35
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
+|++|..++..+.++.....+..+|.+.+++.+.+.|++|.
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~ 143 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN 143 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccc
Confidence 78888877766667777778888888888999999999883
No 25
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.14 E-value=1e-10 Score=114.44 Aligned_cols=101 Identities=20% Similarity=0.298 Sum_probs=75.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC---------------
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~--------------- 367 (457)
.++|+++|.||||||||+|+|++.. ..+++.||+|.+.....+ +..+.|+||||+......
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC-EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC-cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 5789999999999999999999987 589999999987654332 457999999998764420
Q ss_pred --CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 368 --SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 368 --~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
..+|+++..++.. +. +...++...+...+.+.+.+.|++|
T Consensus 82 ~~~~~d~ii~VvD~~-~~-~~~~~~~~~l~~~~~p~ivv~NK~D 123 (274)
T 3i8s_A 82 LSGDADLLINVVDAS-NL-ERNLYLTLQLLELGIPCIVALNMLD 123 (274)
T ss_dssp HHTCCSEEEEEEEGG-GH-HHHHHHHHHHHHHTCCEEEEEECHH
T ss_pred hhcCCCEEEEEecCC-Ch-HHHHHHHHHHHhcCCCEEEEEECcc
Confidence 3567787744443 33 3344555566666888888888887
No 26
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.13 E-value=1e-10 Score=123.39 Aligned_cols=107 Identities=25% Similarity=0.300 Sum_probs=54.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc-CCcEEEEecCCcccCCC-------------C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL-TKRIFLIDCPGVVYQNK-------------D 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~-~~~i~liDtPGi~~~~~-------------~ 367 (457)
+.+++|+++|.||||||||+|+|++.....+++.||+|++.. .+.+ +..+.|+||||+..... -
T Consensus 231 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~ 310 (476)
T 3gee_A 231 SEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM 310 (476)
T ss_dssp HHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence 457899999999999999999999988878999999998864 3333 34799999999865321 1
Q ss_pred CccceEEEeccccCCcccH-HHHHHHHHHhc-CcceehhhcCCCC
Q 012726 368 SETDIVLKGVVRVTNLEDA-AEHIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~~~-~~~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
..+|+++..++........ ......++..+ +.+.+.+.||+|-
T Consensus 311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl 355 (476)
T 3gee_A 311 AEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDR 355 (476)
T ss_dssp SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTS
T ss_pred ccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCC
Confidence 4578888866554433220 11223344443 4678888999884
No 27
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.12 E-value=9.8e-11 Score=113.66 Aligned_cols=100 Identities=23% Similarity=0.258 Sum_probs=74.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-CCcEEEEecCCcccCCCC----------------
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-TKRIFLIDCPGVVYQNKD---------------- 367 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-~~~i~liDtPGi~~~~~~---------------- 367 (457)
.+|+++|.||||||||+|+|++.. ..+++.||+|.+.... .. +..+.|+||||+......
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~-~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~ 80 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNAN-QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVI 80 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTS-EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHh
Confidence 369999999999999999999986 5789999999765433 32 347899999999765421
Q ss_pred -CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 368 -SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 368 -~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
..+|+++..++.. +. +...++...+...+.+.+.+.|++|
T Consensus 81 ~~~~d~vi~VvDas-~~-~~~~~l~~~l~~~~~pvilv~NK~D 121 (256)
T 3iby_A 81 DLEYDCIINVIDAC-HL-ERHLYLTSQLFELGKPVVVALNMMD 121 (256)
T ss_dssp HSCCSEEEEEEEGG-GH-HHHHHHHHHHTTSCSCEEEEEECHH
T ss_pred hCCCCEEEEEeeCC-Cc-hhHHHHHHHHHHcCCCEEEEEEChh
Confidence 3567888755443 33 3345666667777888888888887
No 28
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.06 E-value=8.2e-11 Score=124.40 Aligned_cols=104 Identities=29% Similarity=0.348 Sum_probs=75.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc-CCcEEEEecCCcc-cCCCC-------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL-TKRIFLIDCPGVV-YQNKD------------- 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~-~~~i~liDtPGi~-~~~~~------------- 367 (457)
.+++|+++|.||||||||+|+|++.....++++||+|++.. .+.+ +..+.|+||||+. .....
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 46899999999999999999999988778999999998753 3333 4578999999997 43311
Q ss_pred CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 368 SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
..+|++|..++..+........+.+.+ -.++.+.+.||+|-
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL 362 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDV 362 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSS
T ss_pred hcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccc
Confidence 256888886655443332222333333 25678999999984
No 29
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.04 E-value=1.5e-09 Score=105.44 Aligned_cols=107 Identities=15% Similarity=0.221 Sum_probs=74.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~------------- 367 (457)
...++|+++|.+|||||||+|+|++.....+++.+++|.....+.+ +..+.|+||||+......
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 3578999999999999999999999888888899998865443322 347999999999654311
Q ss_pred -CccceEEEecc-ccCCcccHHHHHHHHHH-hcC----cceehhhcCCCC
Q 012726 368 -SETDIVLKGVV-RVTNLEDAAEHIGEVLK-RVK----KEHLKRAYKIKD 410 (457)
Q Consensus 368 -~e~dlvL~gvv-~~~~l~~~~~~i~~~L~-~~~----~~~l~~~y~i~~ 410 (457)
..++++|..+. ....+......+...+. .++ .+.+.+.+++|-
T Consensus 117 ~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl 166 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQF 166 (270)
T ss_dssp TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSC
T ss_pred cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECccc
Confidence 24677777432 22245444434444443 334 478889999984
No 30
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.04 E-value=1.2e-09 Score=98.48 Aligned_cols=118 Identities=20% Similarity=0.257 Sum_probs=80.9
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC--------------------
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK-------------------- 366 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-------------------- 366 (457)
++|+++|.+|||||||+|+|++.. ..++..||+|.....+... .+.++||||+.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKK-VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCC-CSSSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcC-CccCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 579999999999999999999876 4677789988877666655 899999999753221
Q ss_pred CCccceEEEeccccCCcccH------------HHHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHHcCC
Q 012726 367 DSETDIVLKGVVRVTNLEDA------------AEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTGK 427 (457)
Q Consensus 367 ~~e~dlvL~gvv~~~~l~~~------------~~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r~g~ 427 (457)
...+++++. +++...+.+. ...+...+...+.+.+.+.+++|-.....+.++.++.+.|.
T Consensus 80 ~~~~~~v~~-v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 80 AKNIDVAVL-VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEV 151 (190)
T ss_dssp GGGCCEEEE-EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTC
T ss_pred hccCCEEEE-EEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhh
Confidence 011234444 3333322221 11123344455678999999999666556778888888885
No 31
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.04 E-value=3.7e-10 Score=108.55 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=72.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCC-ceeEEEE--EEc-CCcEEEEecCCcccCCCC------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG-ETKVWQY--ITL-TKRIFLIDCPGVVYQNKD------------ 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg-~T~~~~~--~~~-~~~i~liDtPGi~~~~~~------------ 367 (457)
...++|+++|.+|||||||+|+|++.....++..|+ +|+.... +.. +.++.|+||||+......
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~ 99 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY 99 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999988766666666 6665432 222 457999999999765321
Q ss_pred ----CccceEEEeccccCCcccHHHHHHHHHHhc-----Ccceehhhc-CCCC
Q 012726 368 ----SETDIVLKGVVRVTNLEDAAEHIGEVLKRV-----KKEHLKRAY-KIKD 410 (457)
Q Consensus 368 ----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~-----~~~~l~~~y-~i~~ 410 (457)
..+|.++..+... .+......+...+.++ ..+.+..++ ++|-
T Consensus 100 ~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl 151 (260)
T 2xtp_A 100 LLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDL 151 (260)
T ss_dssp HHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEccccc
Confidence 2467777744433 4655555666666654 445555555 8874
No 32
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.02 E-value=3.8e-10 Score=98.77 Aligned_cols=106 Identities=33% Similarity=0.373 Sum_probs=70.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c-CCcEEEEecCCcccCCC------------CCccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L-TKRIFLIDCPGVVYQNK------------DSETD 371 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~-~~~i~liDtPGi~~~~~------------~~e~d 371 (457)
.+|+++|.+|||||||+|+|.+.....+++.|++|.+..... . +..+.|+||||...... -..++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 479999999999999999999887766788888887544332 2 45789999999875311 13567
Q ss_pred eEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 372 IVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
+++..+.....+......+..++.....+.+.+.+++|-..
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 122 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPK 122 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGG
T ss_pred EEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccccc
Confidence 77775555555666666777777777788999999998543
No 33
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.02 E-value=1.8e-09 Score=104.47 Aligned_cols=116 Identities=22% Similarity=0.239 Sum_probs=76.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE--Ec-CCcEEEEecCCcccCCCC--------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI--TL-TKRIFLIDCPGVVYQNKD-------------- 367 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~--~~-~~~i~liDtPGi~~~~~~-------------- 367 (457)
..++|+++|.+|||||||+|+|++.....+++.+++|...... .. +..+.|+||||+......
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~ 114 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVN 114 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhc
Confidence 5799999999999999999999999887888899988654432 22 447999999998654321
Q ss_pred CccceEEEecc-ccCCcccHHHHHHHHHHh-cC----cceehhhcCCCCC----CCHHHHHHH
Q 012726 368 SETDIVLKGVV-RVTNLEDAAEHIGEVLKR-VK----KEHLKRAYKIKDW----VDENDFLLQ 420 (457)
Q Consensus 368 ~e~dlvL~gvv-~~~~l~~~~~~i~~~L~~-~~----~~~l~~~y~i~~~----~~~~efL~~ 420 (457)
..+++++..+. ....+......+...+.. .+ .+.+.+.+++|-. ...+++++.
T Consensus 115 ~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 115 RTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp CEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred CCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 14577776421 222344433344444433 33 3678888998742 344555543
No 34
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.01 E-value=7.4e-10 Score=107.52 Aligned_cols=102 Identities=26% Similarity=0.296 Sum_probs=73.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------C
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------S 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~ 368 (457)
+.++|+++|.||||||||+|+|++... .++..||+|.......+ +..+.|+||||....... .
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~-~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQ-YVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 468899999999999999999999775 58889999987654333 347899999998754321 2
Q ss_pred ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 369 ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
.+|+++..+ +..++.. ..++...+...+.+.+.+.|++|
T Consensus 83 ~~d~ii~V~-D~t~~~~-~~~~~~~l~~~~~pvilv~NK~D 121 (258)
T 3a1s_A 83 DADLVILVA-DSVNPEQ-SLYLLLEILEMEKKVILAMTAID 121 (258)
T ss_dssp CCSEEEEEE-ETTSCHH-HHHHHHHHHTTTCCEEEEEECHH
T ss_pred CCCEEEEEe-CCCchhh-HHHHHHHHHhcCCCEEEEEECcC
Confidence 467777644 4444432 33444555566777888888776
No 35
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.01 E-value=1e-09 Score=107.02 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=67.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecC-------CCCceeEEEEEEc--CC---cEEEEecCCcccCCC------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAP-------IPGETKVWQYITL--TK---RIFLIDCPGVVYQNK------ 366 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~-------~pg~T~~~~~~~~--~~---~i~liDtPGi~~~~~------ 366 (457)
..++|+++|.+|+|||||+|+|++........ .|+++.+.....+ +. .+.|+||||+.....
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~ 86 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ 86 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence 46899999999999999999999887755443 3444444433333 22 789999999853211
Q ss_pred --------------------------CCccceEEEeccccC-CcccHHHHHHHHHHhcCcceehhhcCCCCC
Q 012726 367 --------------------------DSETDIVLKGVVRVT-NLEDAAEHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 367 --------------------------~~e~dlvL~gvv~~~-~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
+..+++++..+++.. .+......+...+.. +.+.+.+.+++|..
T Consensus 87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~ 157 (274)
T 3t5d_A 87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL 157 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGS
T ss_pred HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCC
Confidence 112446666565543 455555555666655 67899999999854
No 36
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.99 E-value=8.2e-10 Score=104.94 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=71.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCC--CceeEEEE--EEc-CCcEEEEecCCcccCCCC-----------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP--GETKVWQY--ITL-TKRIFLIDCPGVVYQNKD----------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p--g~T~~~~~--~~~-~~~i~liDtPGi~~~~~~----------- 367 (457)
...++|+++|.+|||||||+|+|++.... .+..| ++|..... +.. +..+.|+||||+......
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~-~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVF-HSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCS-CC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcC-ccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999998773 33334 66665432 223 458999999998764321
Q ss_pred -----CccceEEEeccccCCcccHH-HHHHHHHHh----cCcceehhhcCCCCCCC--HH-------HHHHHHHHHcCC
Q 012726 368 -----SETDIVLKGVVRVTNLEDAA-EHIGEVLKR----VKKEHLKRAYKIKDWVD--EN-------DFLLQLCKSTGK 427 (457)
Q Consensus 368 -----~e~dlvL~gvv~~~~l~~~~-~~i~~~L~~----~~~~~l~~~y~i~~~~~--~~-------efL~~la~r~g~ 427 (457)
..++++|..+ +...++... ..+..+++. ...+.+.+.+++|...+ .+ +.+..++.+.|.
T Consensus 106 ~~~~~~~~~~~l~v~-d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~ 183 (239)
T 3lxx_A 106 ILLTSPGPHALLLVV-PLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGD 183 (239)
T ss_dssp HHHTTTCCSEEEEEE-ETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSS
T ss_pred HHhcCCCCcEEEEEe-eCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCC
Confidence 2347777644 444454332 333334332 23478888999884321 22 346667777663
No 37
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.99 E-value=5.6e-10 Score=100.66 Aligned_cols=105 Identities=29% Similarity=0.313 Sum_probs=68.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC-CcEEEEecCCcccCCC-------------CC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT-KRIFLIDCPGVVYQNK-------------DS 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~-~~i~liDtPGi~~~~~-------------~~ 368 (457)
...+|+++|.||||||||+|+|.+.....+++.||+|.+. ..+.++ ..+.++||||+..... -.
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4678999999999999999999998776788899998754 334443 3689999999854211 13
Q ss_pred ccceEEEeccccCCcc-cHHHHHHHHHHhc--CcceehhhcCCC
Q 012726 369 ETDIVLKGVVRVTNLE-DAAEHIGEVLKRV--KKEHLKRAYKIK 409 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~-~~~~~i~~~L~~~--~~~~l~~~y~i~ 409 (457)
.+|.++..++...... +....+..+.... +.+.+.+.+|+|
T Consensus 83 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~D 126 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 126 (172)
T ss_dssp TCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECcc
Confidence 4677776554433222 2222223333333 356777788776
No 38
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=98.97 E-value=1.2e-09 Score=106.31 Aligned_cols=101 Identities=24% Similarity=0.308 Sum_probs=71.9
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-------------~e 369 (457)
.++|+++|.||||||||+|+|++... .+++.||+|.+.....+ +..+.|+||||+...... ..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQ-HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCE-EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCc-ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 47899999999999999999999876 88999999987643322 446899999998764432 34
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcC-cceehhhcCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVK-KEHLKRAYKIK 409 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~-~~~l~~~y~i~ 409 (457)
+|+++..++.. +.. ...+....+...+ .+.+...+++|
T Consensus 82 ~d~vi~v~D~~-~~~-~~~~~~~~~~~~~~~p~ilv~NK~D 120 (271)
T 3k53_A 82 ADVIVDIVDST-CLM-RNLFLTLELFEMEVKNIILVLNKFD 120 (271)
T ss_dssp CSEEEEEEEGG-GHH-HHHHHHHHHHHTTCCSEEEEEECHH
T ss_pred CcEEEEEecCC-cch-hhHHHHHHHHhcCCCCEEEEEEChh
Confidence 67777744433 332 2333434444455 78888888876
No 39
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.97 E-value=3.2e-10 Score=119.26 Aligned_cols=122 Identities=21% Similarity=0.294 Sum_probs=80.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc-CCcEEEEecCCcccCCC-------------C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL-TKRIFLIDCPGVVYQNK-------------D 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~-~~~i~liDtPGi~~~~~-------------~ 367 (457)
+.+++|+++|.||||||||+|+|++.....+++.||+|++.. .+.+ +..+.|+||||+..... -
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 357899999999999999999999987777899999998653 2333 45789999999865321 1
Q ss_pred CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-------------------------CCHHHHHHHHH
Q 012726 368 SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-------------------------VDENDFLLQLC 422 (457)
Q Consensus 368 ~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-------------------------~~~~efL~~la 422 (457)
..+|+++..++...........+...+.. .+.+.+.||+|-. ...+++++.+.
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~~~i~~~l~~--~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~ 379 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGDQEIYEQVKH--RPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAIL 379 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHHHHHHHHHTT--SCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred hcCCEEEEEeccCCCCCHHHHHHHHhccC--CcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence 35788888666655554444344333332 5788888888721 13678888888
Q ss_pred HHcCC
Q 012726 423 KSTGK 427 (457)
Q Consensus 423 ~r~g~ 427 (457)
.....
T Consensus 380 ~~~~~ 384 (462)
T 3geh_A 380 EIVQT 384 (462)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 76654
No 40
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.95 E-value=1.6e-09 Score=106.77 Aligned_cols=107 Identities=19% Similarity=0.246 Sum_probs=65.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC-----ceecCCCCceeEEE----------------------------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV-----CKVAPIPGETKVWQ---------------------------------- 345 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~-----~~vs~~pg~T~~~~---------------------------------- 345 (457)
...+|+|+|.||||||||+|+|++... ..++..|+.+....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 456899999999999999999999876 33445563221111
Q ss_pred -----------------------EEEcCCcEEEEecCCcccCCC-----C-------------CccceEEEeccc-cCCc
Q 012726 346 -----------------------YITLTKRIFLIDCPGVVYQNK-----D-------------SETDIVLKGVVR-VTNL 383 (457)
Q Consensus 346 -----------------------~~~~~~~i~liDtPGi~~~~~-----~-------------~e~dlvL~gvv~-~~~l 383 (457)
......++.|+||||+..... . ..+|.++..++. ...+
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 011124799999999975210 0 246766665554 3333
Q ss_pred ccHH-HHHHHHHHhcCcceehhhcCCCCC
Q 012726 384 EDAA-EHIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 384 ~~~~-~~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
.... ..+...+...+.+.+.+.+|+|..
T Consensus 183 ~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~ 211 (315)
T 1jwy_B 183 ANSDALQLAKEVDPEGKRTIGVITKLDLM 211 (315)
T ss_dssp TTCSHHHHHHHHCSSCSSEEEEEECTTSS
T ss_pred hhhHHHHHHHHhCCCCCcEEEEEcCcccC
Confidence 3222 355666666677889999999854
No 41
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=1.1e-09 Score=113.02 Aligned_cols=74 Identities=22% Similarity=0.248 Sum_probs=39.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEE----E-------------------cC----CcEEEEecC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYI----T-------------------LT----KRIFLIDCP 359 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~----~-------------------~~----~~i~liDtP 359 (457)
++|++||.||||||||+|+|++.. +.+++.|++|++.... . .. .++.|+|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 479999999999999999999988 6889999999754321 1 01 258999999
Q ss_pred CcccCCC------------CCccceEEEeccccC
Q 012726 360 GVVYQNK------------DSETDIVLKGVVRVT 381 (457)
Q Consensus 360 Gi~~~~~------------~~e~dlvL~gvv~~~ 381 (457)
|+..... -..+|+++..+...+
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~ 113 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG 113 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEeccc
Confidence 9964211 146788887555443
No 42
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=98.93 E-value=2.4e-09 Score=104.93 Aligned_cols=101 Identities=25% Similarity=0.277 Sum_probs=69.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc--CCcEEEEecCCcccCCCC-------------Ccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL--TKRIFLIDCPGVVYQNKD-------------SET 370 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~--~~~i~liDtPGi~~~~~~-------------~e~ 370 (457)
.++|+++|.||||||||+|+|++... .++++||+|.+.....+ +..+.++||||....... ..+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~-~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ-RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC-CCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 57899999999999999999998763 68899999976554444 457999999998654321 246
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
|+++..++ ..++.. ..++...+...+.+.+.+.|++|
T Consensus 82 d~vi~V~D-~t~~e~-~~~~~~~l~~~~~p~ilv~NK~D 118 (272)
T 3b1v_A 82 DSILNVVD-ATNLER-NLYLTTQLIETGIPVTIALNMID 118 (272)
T ss_dssp SEEEEEEE-GGGHHH-HHHHHHHHHHTCSCEEEEEECHH
T ss_pred CEEEEEec-CCchHh-HHHHHHHHHhcCCCEEEEEEChh
Confidence 77776443 333322 23333344445667777777765
No 43
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.93 E-value=5.2e-09 Score=92.40 Aligned_cols=116 Identities=17% Similarity=0.165 Sum_probs=74.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
.+.++|+++|.+|||||||+|+|++.......+..|.+.. .+.. +..+.++||||...... -..+|.++..+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 82 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVE--TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVV 82 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEE--EEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceE--EEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 3568999999999999999999987665444444444322 2222 45789999999754221 14577777754
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHHH
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
+..+ .+......+..++.. .+.+.+.+.+++|-.. +..++.+.+
T Consensus 83 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 133 (171)
T 1upt_A 83 DSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSL 133 (171)
T ss_dssp ETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHh
Confidence 4332 244444555555554 3567899999998533 345554444
No 44
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.92 E-value=4.8e-09 Score=92.30 Aligned_cols=122 Identities=14% Similarity=-0.054 Sum_probs=65.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcC--CcEEEEecCCcccCCCC-----CccceEEEecc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT--KRIFLIDCPGVVYQNKD-----SETDIVLKGVV 378 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~--~~i~liDtPGi~~~~~~-----~e~dlvL~gvv 378 (457)
.++|+++|.+|||||||+|+|.+.....+++.+|+|.......-+ ..+.++||||....... ..++.++..++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYS 81 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEE
Confidence 478999999999999999999998887888888988754332222 25789999997543211 34566555332
Q ss_pred cc--CCcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 379 RV--TNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 379 ~~--~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.. +.+......+..++... +.+.+.+.+++|-.. -..+....++...|.
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 138 (166)
T 3q72_A 82 VTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDC 138 (166)
T ss_dssp TTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCC
Confidence 22 12222233334444432 457888999998432 234555677777764
No 45
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=98.92 E-value=8.9e-10 Score=109.60 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=93.4
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHH-HHHHHHhcCCCcEEEEeec
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHL-ERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l-~k~L~~~~~~K~vIlVLNK 252 (457)
..+.+++||||+++.... ......|...+...+..+|+||+|+|+.++.+..+..+ .+.+.. .+.|+|+|+||
T Consensus 58 ~~~i~lvDTPG~~~~~~~----~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK 131 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKS----DVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINK 131 (308)
T ss_dssp TEEEEEEECCCCCCCCTT----CHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEEC
T ss_pred CCeEEEEECcCCCccccc----hhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEEC
Confidence 566778999998642200 11126777888899999999999999988876555444 444443 37899999999
Q ss_pred CCCC-ChhhHHHHHHHHHhcCC--eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 253 CDLV-PAWATKGWLRVLSKEYP--SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLv-p~~~~~~wl~~l~~~~p--~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+|++ +......+++.+.+.+. ..+|++||.++.|+++|++.|.++++.
T Consensus 132 ~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~ 182 (308)
T 3iev_A 132 IDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE 182 (308)
T ss_dssp GGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred ccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence 9999 77777778888877763 568899999999999999999888753
No 46
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.92 E-value=5.8e-09 Score=92.44 Aligned_cols=121 Identities=15% Similarity=0.019 Sum_probs=70.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-------CCCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-------KDSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-------~~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.....+.+.+|+|.....+.++. .+.++||||..... ....++.++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i 82 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYV 82 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEE
Confidence 46899999999999999999999988777777888876555555543 57899999976421 113456665
Q ss_pred EeccccCCc---ccHHHHHHHHHHhc----CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 375 KGVVRVTNL---EDAAEHIGEVLKRV----KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~l---~~~~~~i~~~L~~~----~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
..+ .+.+. ......+. .+.+. +.+.+.+.+++|-... ..+-...++...|.
T Consensus 83 ~v~-d~~~~~s~~~~~~~~~-~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 143 (175)
T 2nzj_A 83 IVY-SIADRGSFESASELRI-QLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDC 143 (175)
T ss_dssp EEE-ETTCHHHHHHHHHHHH-HHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTS
T ss_pred EEE-ECCCHHHHHHHHHHHH-HHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCC
Confidence 533 33222 22222222 23332 5678999999985321 23344566666663
No 47
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.89 E-value=5.7e-09 Score=94.45 Aligned_cols=117 Identities=23% Similarity=0.140 Sum_probs=75.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
.+.++|+++|.+|||||||+|+|++.......+..|.+.....+ -+..+.++||||...... -..+|.++..++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 98 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQY-KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVD 98 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEE-TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEE-CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEe
Confidence 46799999999999999999999887765555555543322211 245789999999754321 145777777444
Q ss_pred ccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHHH
Q 012726 379 RVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
..+ .+......+..++.. .+.+.+.+.+++|-.. +.+++.+.+
T Consensus 99 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 148 (189)
T 2x77_A 99 STDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQL 148 (189)
T ss_dssp TTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 332 244444445555544 2567899999998543 334554444
No 48
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.88 E-value=5.5e-09 Score=101.91 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=29.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-----eecCCCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-----KVAPIPG 339 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-----~vs~~pg 339 (457)
...+|+++|.||||||||+|+|++.... .++..|+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~ 64 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 64 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccce
Confidence 4578999999999999999999998765 4555675
No 49
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.88 E-value=1.7e-08 Score=91.34 Aligned_cols=117 Identities=21% Similarity=0.185 Sum_probs=75.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC-----CccceEEEecc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD-----SETDIVLKGVV 378 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~-----~e~dlvL~gvv 378 (457)
.+.++|+++|.+|||||||+|+|++.......+..|.+.....+ -+..+.|+||||....... ..+|+++..++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 92 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 92 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEE-TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEe
Confidence 46799999999999999999999976665666666654432222 2457899999997543221 45777777544
Q ss_pred ccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHHH
Q 012726 379 RVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
..+ .+......+..++.. .+.+.+.+.+++|-.. +.+++.+.+
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 142 (187)
T 1zj6_A 93 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFL 142 (187)
T ss_dssp TTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHh
Confidence 332 244444555555553 3567899999998533 345554444
No 50
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.88 E-value=2.1e-09 Score=99.01 Aligned_cols=109 Identities=23% Similarity=0.283 Sum_probs=63.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcCCcEEEEecCCcccCCCC---------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKD--------------- 367 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~--------------- 367 (457)
..+..|+++|.+|||||||+|+|++.. ...+++.+|+|.....+.++..+.++||||+......
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 103 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYL 103 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999876 5667889999987665555558899999998532100
Q ss_pred ---CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 368 ---SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 368 ---~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
...+.++..+............+..++...+.+.+...+++|..+
T Consensus 104 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s 151 (210)
T 1pui_A 104 EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA 151 (210)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred HhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence 123333332222222333333455666777777777788887554
No 51
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.88 E-value=3.4e-09 Score=116.76 Aligned_cols=107 Identities=16% Similarity=0.133 Sum_probs=75.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCc--------------eeEE------EEE----------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGE--------------TKVW------QYI---------------- 347 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~--------------T~~~------~~~---------------- 347 (457)
...++|+|+|.||+|||||+|+|+|...+.+++.|+| |... ..+
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3578999999999999999999999998888888887 3321 000
Q ss_pred -------------------EcC-----CcEEEEecCCcccCCCC--------CccceEEEeccccCCcccHHH-HHHHHH
Q 012726 348 -------------------TLT-----KRIFLIDCPGVVYQNKD--------SETDIVLKGVVRVTNLEDAAE-HIGEVL 394 (457)
Q Consensus 348 -------------------~~~-----~~i~liDtPGi~~~~~~--------~e~dlvL~gvv~~~~l~~~~~-~i~~~L 394 (457)
..+ ..+.|+||||+...... ..+|++|..+.....++..+. .+...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 000 46999999998763211 357888886665554443332 233345
Q ss_pred HhcCcceehhhcCCCC
Q 012726 395 KRVKKEHLKRAYKIKD 410 (457)
Q Consensus 395 ~~~~~~~l~~~y~i~~ 410 (457)
...+.+.+.+.|++|-
T Consensus 227 ~~~~~~iiiVlNK~Dl 242 (695)
T 2j69_A 227 KGRGLTVFFLVNAWDQ 242 (695)
T ss_dssp TTSCCCEEEEEECGGG
T ss_pred HhhCCCEEEEEECccc
Confidence 5556678899999984
No 52
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.87 E-value=2.2e-10 Score=118.14 Aligned_cols=74 Identities=24% Similarity=0.337 Sum_probs=40.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc------------------CCcEEEEecCCccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL------------------TKRIFLIDCPGVVY 363 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~------------------~~~i~liDtPGi~~ 363 (457)
..+.+|++||.||||||||+|+|++... .+++.|++|..... +.+ +..+.++||||+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA-SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 3467899999999999999999999876 88899999965322 222 23589999999987
Q ss_pred CCCC------------CccceEEEecc
Q 012726 364 QNKD------------SETDIVLKGVV 378 (457)
Q Consensus 364 ~~~~------------~e~dlvL~gvv 378 (457)
.... .++|++++.+.
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD 125 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTR 125 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEE
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEe
Confidence 5431 35677777544
No 53
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.87 E-value=2.2e-08 Score=90.34 Aligned_cols=124 Identities=14% Similarity=0.072 Sum_probs=74.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC--------------------------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT-------------------------------- 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~-------------------------------- 350 (457)
...++|+++|.+|||||||||+|++..... ..+..|.+.....+.++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 357899999999999999999999865421 11222221112222222
Q ss_pred --------CcEEEEecCCcccCCCC-----CccceEEEeccccCC--cccHHHHHHHHHHhcCcceehhhcCCCCC--CC
Q 012726 351 --------KRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVTN--LEDAAEHIGEVLKRVKKEHLKRAYKIKDW--VD 413 (457)
Q Consensus 351 --------~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~~--l~~~~~~i~~~L~~~~~~~l~~~y~i~~~--~~ 413 (457)
..+.|+||||....... ..+|+++..++.... +.+...++..+......+.+.+.+++|.. ..
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~ 164 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQV 164 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCS
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccC
Confidence 46889999996543222 456777774443322 22223344455555667899999999931 12
Q ss_pred HHHHHHHHHHHcCC
Q 012726 414 ENDFLLQLCKSTGK 427 (457)
Q Consensus 414 ~~efL~~la~r~g~ 427 (457)
..+-+..+++..|.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (208)
T 3clv_A 165 DILEVQKYAQDNNL 178 (208)
T ss_dssp CHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHcCC
Confidence 23445566666664
No 54
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=98.85 E-value=6.3e-09 Score=111.68 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=74.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc--eecCCCCceeEEEEEE----------------------------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC--KVAPIPGETKVWQYIT---------------------------------- 348 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~--~vs~~pg~T~~~~~~~---------------------------------- 348 (457)
....|+|+|.+|||||||||+|++...+ .+++.|+||+......
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3578999999999999999999998876 5788888876322111
Q ss_pred ----cC----CcEEEEecCCcccCCCC----------------CccceEEEeccccC-CcccHHHHHHHHHHhcCcceeh
Q 012726 349 ----LT----KRIFLIDCPGVVYQNKD----------------SETDIVLKGVVRVT-NLEDAAEHIGEVLKRVKKEHLK 403 (457)
Q Consensus 349 ----~~----~~i~liDtPGi~~~~~~----------------~e~dlvL~gvv~~~-~l~~~~~~i~~~L~~~~~~~l~ 403 (457)
++ .++.||||||+..+... ..+|+++..++... .+.+....+...+...+.+.+.
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvil 223 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRV 223 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEE
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEE
Confidence 01 36899999999863210 23588888665543 2444444555555555677899
Q ss_pred hhcCCCCC
Q 012726 404 RAYKIKDW 411 (457)
Q Consensus 404 ~~y~i~~~ 411 (457)
+.||+|..
T Consensus 224 VlNK~Dl~ 231 (550)
T 2qpt_A 224 VLNKADMV 231 (550)
T ss_dssp EEECGGGS
T ss_pred EEECCCcc
Confidence 99999854
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.85 E-value=1.5e-08 Score=89.00 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=75.9
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
.++|+++|.+|||||||+|+|++.... ...+.+|.+.....+.++. .+.++||||....... ..+|.++..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 578999999999999999999976543 3445566655555555543 6899999996432211 356777764
Q ss_pred ccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCC------CCHHHHHHHHHHHcCC
Q 012726 377 VVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW------VDENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~------~~~~efL~~la~r~g~ 427 (457)
++..+. +.+...++..+.... ..+.+.+.+++|-. .-..+....++...|.
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~ 143 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGL 143 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTC
T ss_pred EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCC
Confidence 433221 222223334444443 45677888988732 1224556667777664
No 56
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.85 E-value=1.1e-08 Score=92.30 Aligned_cols=116 Identities=20% Similarity=0.164 Sum_probs=77.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
.+.++|+++|.+|||||||+|+|++.......+.+|.+.....+ -+..+.|+||||...... -..+|.++..++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D 97 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVI-NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVD 97 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEE-TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 45789999999999999999999998877777778866432222 245789999999754321 145677777554
Q ss_pred ccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHH
Q 012726 379 RVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQ 420 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~ 420 (457)
..+ .+......+..++.. .+.+.+.+.+|+|-.. +.+++.+.
T Consensus 98 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~ 146 (181)
T 2h17_A 98 STDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQF 146 (181)
T ss_dssp TTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHH
Confidence 332 244444455555553 4567889999998533 34444443
No 57
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.85 E-value=5.7e-09 Score=92.94 Aligned_cols=101 Identities=27% Similarity=0.385 Sum_probs=62.9
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc-CCcEEEEecCCcccCCCC-------------Cc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL-TKRIFLIDCPGVVYQNKD-------------SE 369 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~-~~~i~liDtPGi~~~~~~-------------~e 369 (457)
..+|+++|.+|||||||+|+|.+... .++..||+|.+.. .+.. +..+.++||||....... ..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS-SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe-eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 46899999999999999999998654 4677888776432 2333 347899999998653211 14
Q ss_pred cceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCC
Q 012726 370 TDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIK 409 (457)
Q Consensus 370 ~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~ 409 (457)
+++++..+ +........ .....+.+.+.+.+.+.+++|
T Consensus 82 ~~~~i~v~-D~~~~~~~~-~~~~~~~~~~~p~ilv~nK~D 119 (165)
T 2wji_A 82 PDLVVNIV-DATALERNL-YLTLQLMEMGANLLLALNKMD 119 (165)
T ss_dssp CSEEEEEE-ETTCHHHHH-HHHHHHHHTTCCEEEEEECHH
T ss_pred CCEEEEEe-cCCchhHhH-HHHHHHHhcCCCEEEEEEchH
Confidence 57777644 433332222 222233445678888899887
No 58
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.84 E-value=2.6e-08 Score=91.49 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=74.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++... .....|+++.+ ...+.++. .+.|+||||....... ..+|++
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 96 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKF-NPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI 96 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCC-CCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC-CcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3468999999999999999999997654 23334444433 33344443 6899999997543322 356777
Q ss_pred EEeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCC--CCHHHHHHHHHHHcCC
Q 012726 374 LKGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW--VDENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~--~~~~efL~~la~r~g~ 427 (457)
+..++..+. +.....++..+.... ..+.+.+.+++|-. ....+....++...|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 156 (213)
T 3cph_A 97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI 156 (213)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCC
Confidence 774443221 122223333333333 45788899999852 1223455667777774
No 59
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.83 E-value=1.1e-08 Score=91.70 Aligned_cols=116 Identities=15% Similarity=0.131 Sum_probs=72.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
...++|+++|.+|||||||+|+|++.......+..|.+.....+ -+..+.++||||...... -..+|+++..++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSY-KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVD 94 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEE-TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 46899999999999999999999977666667777754322222 245789999999854321 145677777554
Q ss_pred ccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHH
Q 012726 379 RVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQ 420 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~ 420 (457)
..+ .+......+..++.. .+.+.+.+.+++|-.. +.+++.+.
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~ 143 (183)
T 1moz_A 95 STDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKE 143 (183)
T ss_dssp TTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHH
Confidence 322 233344445555543 3457889999998432 34444333
No 60
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.83 E-value=1.2e-08 Score=96.03 Aligned_cols=122 Identities=21% Similarity=0.188 Sum_probs=74.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCC--------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNK-------------- 366 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~-------------- 366 (457)
...++|+++|.+|||||||+|+|++.... +++.+++|+....... +..+.|+||||......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 105 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITAL 105 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHh
Confidence 35689999999999999999999998764 7788898886654332 34789999999953211
Q ss_pred CCccceEEEeccccCC--cc-cHHHHHHHHHHhc--CcceehhhcCCCCCC----CH--HHHHHHHHHHcC
Q 012726 367 DSETDIVLKGVVRVTN--LE-DAAEHIGEVLKRV--KKEHLKRAYKIKDWV----DE--NDFLLQLCKSTG 426 (457)
Q Consensus 367 ~~e~dlvL~gvv~~~~--l~-~~~~~i~~~L~~~--~~~~l~~~y~i~~~~----~~--~efL~~la~r~g 426 (457)
...+|.++..++.... +. .....+...+... ..+.+.+.+++|-.. .. .+.++.++...|
T Consensus 106 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 176 (228)
T 2qu8_A 106 AHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVK 176 (228)
T ss_dssp HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCC
T ss_pred hccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcC
Confidence 1234566664443322 21 1112233344443 567899999988422 11 235677777765
No 61
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.82 E-value=4.9e-09 Score=95.04 Aligned_cols=138 Identities=17% Similarity=0.054 Sum_probs=79.6
Q ss_pred CChHHHHHHHHHHHHhh---cCccceEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEEEcCCcEEEEecC
Q 012726 285 FGKGSLLSVLRQFARLK---SDKQAISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYITLTKRIFLIDCP 359 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~---~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~~~~~~i~liDtP 359 (457)
..+..+.+.+.++.... .....++|+++|.+|||||||+|+|++..... ++..|++|.+. ....+.++|||
T Consensus 24 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~ 99 (193)
T 2ged_A 24 RKISQWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFP 99 (193)
T ss_dssp TBCHHHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEET
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECC
Confidence 34566666666554321 12456899999999999999999999865422 23344444332 34578999999
Q ss_pred CcccCCCC---------CccceEEEeccccCCc---ccHHHHHHHHHHh------cCcceehhhcCCCC--CCCHHHHHH
Q 012726 360 GVVYQNKD---------SETDIVLKGVVRVTNL---EDAAEHIGEVLKR------VKKEHLKRAYKIKD--WVDENDFLL 419 (457)
Q Consensus 360 Gi~~~~~~---------~e~dlvL~gvv~~~~l---~~~~~~i~~~L~~------~~~~~l~~~y~i~~--~~~~~efL~ 419 (457)
|....... ..++.++..++..... .....++..++.. ...+.+.+.+++|- ....+++.+
T Consensus 100 G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~ 179 (193)
T 2ged_A 100 GHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKD 179 (193)
T ss_dssp TCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHH
T ss_pred CCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHH
Confidence 98654322 1256777644333122 2222344444433 25678899999984 345677777
Q ss_pred HHHHHcC
Q 012726 420 QLCKSTG 426 (457)
Q Consensus 420 ~la~r~g 426 (457)
.+.+..+
T Consensus 180 ~l~~~l~ 186 (193)
T 2ged_A 180 ALESEIQ 186 (193)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 62
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=98.82 E-value=1.5e-09 Score=107.77 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=101.4
Q ss_pred hhccccccccchhhcCCCCCC--CCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKR--KRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSK 200 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~r--k~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~k 200 (457)
+++++.++..++.++|.+.-. ..|.. +. .+.+ .....+..+.++.||||++... ..+ ..
T Consensus 14 G~~nvGKSTLln~l~g~~~~ivs~~~~t---Tr--------~~i~--~i~~~~~~~l~l~DTpG~~~~~-~~l-----~~ 74 (301)
T 1wf3_A 14 GKPNVGKSTLLNNLLGVKVAPISPRPQT---TR--------KRLR--GILTEGRRQIVFVDTPGLHKPM-DAL-----GE 74 (301)
T ss_dssp CSTTSSHHHHHHHHHTSCCSCCCSSSCC---CC--------SCEE--EEEEETTEEEEEEECCCCCCCC-SHH-----HH
T ss_pred CCCCCCHHHHHHHHhCCceeeecCCCCc---ee--------EEEE--EEEEeCCcEEEEecCccccchh-hHH-----HH
Confidence 456777777788888765321 11110 00 0000 0112335567789999987421 111 15
Q ss_pred HHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEe
Q 012726 201 RIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 201 r~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~i 279 (457)
.+...+..++..+|+||+|+|+.++++..+..+.+.+....++.|+|+|+||+|+.+... ...+++.+ .....++++
T Consensus 75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~--~~~~~~~~i 152 (301)
T 1wf3_A 75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL--LPEAEPRML 152 (301)
T ss_dssp HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT--STTSEEEEC
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh--cCcCcEEEE
Confidence 577788889999999999999998876554445455544223789999999999987544 44444444 122457889
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|+++|++.|.+.++
T Consensus 153 SA~~g~gv~~l~~~l~~~l~ 172 (301)
T 1wf3_A 153 SALDERQVAELKADLLALMP 172 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCC
T ss_pred eCCCCCCHHHHHHHHHHhcc
Confidence 99999999999999987654
No 63
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=98.82 E-value=2.2e-09 Score=111.60 Aligned_cols=104 Identities=23% Similarity=0.205 Sum_probs=68.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c-CC-cEEEEecCCcccCCCC------------C
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L-TK-RIFLIDCPGVVYQNKD------------S 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~-~~-~i~liDtPGi~~~~~~------------~ 368 (457)
..++|+++|.+|+|||||+|+|++.....+++.+|+|.+..... + +. .+.|+||||+...... .
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~ 112 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHh
Confidence 46899999999999999999999988877889999997654332 2 22 7999999999754321 2
Q ss_pred ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 369 ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
.+|+++..++. ........+...+...+.+.+.+.||+|.
T Consensus 113 ~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl 152 (423)
T 3qq5_A 113 RADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDV 152 (423)
T ss_dssp SCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTT
T ss_pred cCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCC
Confidence 47888875544 45555666677777778899999999984
No 64
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.82 E-value=1.3e-08 Score=102.82 Aligned_cols=53 Identities=23% Similarity=0.213 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHhhc---CccceEEEEeecCCCchHHHHHHHhCCCCc-----eecCCCC
Q 012726 287 KGSLLSVLRQFARLKS---DKQAISVGFVGYPNVGKSSVINTLRTKNVC-----KVAPIPG 339 (457)
Q Consensus 287 i~~Li~~L~~~~~~~~---~~~~i~v~vvG~pNvGKSSliN~L~~~~~~-----~vs~~pg 339 (457)
+..|++.|...++... .-...+|+|||.||||||||+|+|++.... .++..|+
T Consensus 9 l~~~~~~l~d~l~~~g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~ 69 (353)
T 2x2e_A 9 LIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPL 69 (353)
T ss_dssp CHHHHHHHHHHHHTTTCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCE
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccce
Confidence 3445555555444322 223568999999999999999999998764 4455566
No 65
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.82 E-value=3.1e-08 Score=88.63 Aligned_cols=122 Identities=18% Similarity=0.104 Sum_probs=73.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCC-CceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKN-VCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~-~~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++.. .....+..+.+. ...+..+. .+.|+||||....... ..++.++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~ 83 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL 83 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence 46899999999999999999999544 333344444443 22333332 5689999997643211 35676666
Q ss_pred eccccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++..+ .+......+..++... ..+.+.+.+++|-.. -..+-...+++..|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (181)
T 3t5g_A 84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNA 143 (181)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCC
Confidence 333321 1222223333444433 457888999998422 234556777887775
No 66
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.82 E-value=1.3e-08 Score=91.67 Aligned_cols=117 Identities=16% Similarity=0.124 Sum_probs=72.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCC-----CCCccceEEEecc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQN-----KDSETDIVLKGVV 378 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv 378 (457)
...++|+++|.+|||||||+|+|++.......+..|.+.....+ -+..+.++||||..... .-..+|.++..++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d 94 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEH-RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVD 94 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEE-TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEE-CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEE
Confidence 46799999999999999999999987744455555544322222 24478999999974321 1245777777444
Q ss_pred ccCC--cccHHHHHHHHHHh---cCcceehhhcCCCCC--CCHHHHHHHH
Q 012726 379 RVTN--LEDAAEHIGEVLKR---VKKEHLKRAYKIKDW--VDENDFLLQL 421 (457)
Q Consensus 379 ~~~~--l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~--~~~~efL~~l 421 (457)
..+. +.+....+..++.. .+.+.+.+.+++|-. .+.+++.+.+
T Consensus 95 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 144 (186)
T 1ksh_A 95 SADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEAL 144 (186)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHh
Confidence 3221 33333444555543 346789999999843 2344444433
No 67
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.81 E-value=2.9e-08 Score=87.24 Aligned_cols=123 Identities=11% Similarity=0.063 Sum_probs=75.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++... ....+.+|+|.....+... ..+.++||||....... ..++.++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII 84 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence 468999999999999999999998763 3456677777655555443 36889999998543221 35677776
Q ss_pred eccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++.... +.....++..+.... ..+.+.+.+++|-.. -..+....++...|.
T Consensus 85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 143 (170)
T 1z0j_A 85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHA 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence 4433221 111122222232221 234666779988422 234556677777663
No 68
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=2.6e-08 Score=90.75 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=78.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++... ....+.+|+|.....+..+. .+.|+||||....... ..++.++
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 100 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV 100 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence 3578999999999999999999998764 35677888877666555532 6899999996533221 3567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
..++.... +.....++..+.... ..+.+.+.+++|-. .-..+.+..+++..|.
T Consensus 101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 160 (192)
T 2fg5_A 101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGA 160 (192)
T ss_dssp EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 64433221 112222333333332 45788889998842 2123445667776663
No 69
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.81 E-value=7e-09 Score=93.71 Aligned_cols=107 Identities=18% Similarity=0.052 Sum_probs=64.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+. ..+..++... ..+.|+++|+||+|+.+..........+........+.+||+
T Consensus 83 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (195)
T 1x3s_A 83 SYYRGAQGVILVYDVTRRDTF--VKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAK 160 (195)
T ss_dssp HHHTTCCEEEEEEETTCHHHH--HTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCC
Confidence 456889999999999776432 1233333321 146899999999999654333333333334445567889999
Q ss_pred CCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHH
Q 012726 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS 321 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSS 321 (457)
++.|+++|++.|.+.+..... ...-+.+|+||||
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~~-----~~~~~~~n~gkSs 194 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTPG-----LWESENQNSGPSS 194 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSGG-----GTCC---------
T ss_pred CCCCHHHHHHHHHHHHHhhhh-----hhcccccCCCCCC
Confidence 999999999999887764322 1122557999998
No 70
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.80 E-value=1.2e-08 Score=90.81 Aligned_cols=117 Identities=19% Similarity=0.205 Sum_probs=71.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEc-CCcEEEEecCCcccCCCC-----CccceEEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITL-TKRIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~-~~~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
...++|+++|.+|||||||+|+|++... .....|++|.+.. .+.+ +..+.|+||||....... ..+|+++.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKV-TEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCS-SCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcc-ccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 4578999999999999999999998765 3344555554321 2222 457899999997543211 35677777
Q ss_pred eccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC-CHHHHHHHH
Q 012726 376 GVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV-DENDFLLQL 421 (457)
Q Consensus 376 gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~-~~~efL~~l 421 (457)
.++...............+...+.+.+.+.+++|-.. +.+++.+.+
T Consensus 85 v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (178)
T 2lkc_A 85 VVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQEL 131 (178)
T ss_dssp EEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHH
Confidence 5543332222222222333344667899999998544 344444443
No 71
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.80 E-value=1.6e-08 Score=88.32 Aligned_cols=121 Identities=14% Similarity=0.056 Sum_probs=69.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceec-CCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVA-PIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs-~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
.++|+++|.+|||||||+|+|++....... +..+. .....+.++. .+.|+||||....... ..++.++..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcce-eEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 578999999999999999999976543221 21121 1122333332 4889999996432111 245666653
Q ss_pred ccccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 377 VVRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
++..+ .+......+..++... +.+.+.+.+++|-. .-..+....+++..|.
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 140 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGC 140 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTS
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCC
Confidence 33322 1222333444455443 56788899999832 1123445667776663
No 72
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.80 E-value=2.1e-08 Score=90.86 Aligned_cols=116 Identities=18% Similarity=0.174 Sum_probs=71.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC--ceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV--CKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~--~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
...++|+++|.+|||||||+|+|++... ....+..|.+ ...+.. +..+.|+||||...... -..+|+++.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 96 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIF 96 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999998762 2233333322 222333 35799999999643221 145677777
Q ss_pred eccccCC--cccHHHHHHHHHHh-----cCcceehhhcCCCCCC--CHHHHHHHH
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKR-----VKKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
.++..+. +......+..++.. .+.+.+.+.+++|-.. +.+++.+.+
T Consensus 97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 151 (190)
T 2h57_A 97 VIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLL 151 (190)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHh
Confidence 4443321 33333455556655 3567899999998533 344544443
No 73
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.80 E-value=3.8e-08 Score=86.49 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=71.1
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
.++|+++|.+|||||||+|+|++.... ....|+++.+ ...+.++. .+.|+||||....... ..+|.++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFN-PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCC-C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 578999999999999999999976642 2333444333 33444443 5789999997543322 35677776
Q ss_pred eccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCC--CCHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW--VDENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~--~~~~efL~~la~r~g~ 427 (457)
.++.... +......+..+.... ..+.+.+.+++|-. ....+..+.+++..|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGI 139 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCC
Confidence 4433221 222223333344433 45788899999852 1234556677777774
No 74
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.79 E-value=3.2e-08 Score=88.68 Aligned_cols=121 Identities=14% Similarity=0.052 Sum_probs=71.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++... ....+++|.+. ..+.++. .+.|+||||....... ..++.++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 80 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 80 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSC--CCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 468999999999999999999997664 23334444332 2233332 3678999996543322 2456666
Q ss_pred EeccccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCC--CCHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDW--VDENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~--~~~~efL~~la~r~g~ 427 (457)
..++..+ .+.....++..+.... +.+.+.+.+++|-. ....+.++.++...|.
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~ 140 (189)
T 4dsu_A 81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGI 140 (189)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCC
Confidence 5333221 1222223333343322 46788899999843 2345667778887764
No 75
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.79 E-value=4.9e-09 Score=106.12 Aligned_cols=116 Identities=21% Similarity=0.308 Sum_probs=78.1
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC--CcEEEEecCCcccCCCC------------Cccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT--KRIFLIDCPGVVYQNKD------------SETD 371 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~--~~i~liDtPGi~~~~~~------------~e~d 371 (457)
.|++||+||||||||||+|++... .+++.|++|.... .+.++ ..+.|+||||+...... ..++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~-~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP-KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC-EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC-ccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 689999999999999999998765 6788999887543 34444 57999999998753221 2367
Q ss_pred eEEEeccccCCc--ccHH---HHHHHHHHhc-----CcceehhhcCCCCCCCHHHHHHHHHHHcC
Q 012726 372 IVLKGVVRVTNL--EDAA---EHIGEVLKRV-----KKEHLKRAYKIKDWVDENDFLLQLCKSTG 426 (457)
Q Consensus 372 lvL~gvv~~~~l--~~~~---~~i~~~L~~~-----~~~~l~~~y~i~~~~~~~efL~~la~r~g 426 (457)
+++..++. ... .++. ..+...|..+ ..+.+.+.+|+|-.. ..+.++.++...+
T Consensus 239 ~ll~VvD~-s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~-~~e~~~~l~~~l~ 301 (342)
T 1lnz_A 239 VIVHVIDM-SGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPE-AAENLEAFKEKLT 301 (342)
T ss_dssp EEEEEEES-SCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTT-HHHHHHHHHHHCC
T ss_pred EEEEEEEC-CcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCC-CHHHHHHHHHHhh
Confidence 78775444 321 1232 2333344442 567899999998643 3455666776655
No 76
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.79 E-value=4.3e-08 Score=87.39 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=75.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++...... .+..|++.....+.++. .+.|+||||....... ..+|.++
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 89 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI 89 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence 3468999999999999999999997665332 23334444334444432 6899999996533211 3567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..++..+. +.....++..+.... ..+.+.+.+++|-.. -..+.+..+++..|.
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (181)
T 2efe_B 90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGL 149 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCC
Confidence 74443221 122223334444443 456788899998532 124456667777764
No 77
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.79 E-value=1.4e-08 Score=91.49 Aligned_cols=120 Identities=25% Similarity=0.300 Sum_probs=75.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc-CCcEEEEecCCcccCCCC-------------C
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL-TKRIFLIDCPGVVYQNKD-------------S 368 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~-~~~i~liDtPGi~~~~~~-------------~ 368 (457)
..++|+++|.+|||||||+|+|++... .++..||+|.+... +.. +..+.++||||....... .
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENV-YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCE-EEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 357899999999999999999998663 66778998876543 222 347899999998654211 1
Q ss_pred ccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC--CCHHHHHHHHHHHcCC
Q 012726 369 ETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW--VDENDFLLQLCKSTGK 427 (457)
Q Consensus 369 e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~--~~~~efL~~la~r~g~ 427 (457)
.+++++..+ +...+.... .....+...+.+.+.+.+++|.. ....+.++.+++..|.
T Consensus 85 ~~~~~i~v~-d~~~~~~~~-~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 143 (188)
T 2wjg_A 85 KPDLVVNIV-DATALERNL-YLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGV 143 (188)
T ss_dssp CCSEEEEEE-EGGGHHHHH-HHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTS
T ss_pred CCCEEEEEe-cchhHHHHH-HHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCC
Confidence 356666643 333332222 22333444567788888888721 0001234556666653
No 78
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=98.79 E-value=1.7e-08 Score=93.69 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=81.6
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|++|+....... ........++.........+|+||+|+|+.+++......+.+++.. .+.|+|+|+||+|
T Consensus 79 ~~~~l~DtpG~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~--~~~p~i~v~nK~D 155 (223)
T 4dhe_A 79 PVAHLVDLPGYGYAEVPG-AAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAP--TGKPIHSLLTKCD 155 (223)
T ss_dssp CSEEEEECCCCCSSCCCS-THHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGG--GCCCEEEEEECGG
T ss_pred CcEEEEcCCCCCcccCCh-hhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHh--cCCCEEEEEeccc
Confidence 345578999974321000 0000113344555555666999999999998776555556666654 4789999999999
Q ss_pred CCChhhHHHH----HHHHHhc------CCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 255 LVPAWATKGW----LRVLSKE------YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 255 Lvp~~~~~~w----l~~l~~~------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+.+....... .+.+... ....+|.+||+++.|+++|++.|.+.++.
T Consensus 156 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 156 KLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP 211 (223)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred cCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence 9986543333 2333332 34667889999999999999999887753
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.79 E-value=3.6e-08 Score=89.38 Aligned_cols=118 Identities=19% Similarity=0.112 Sum_probs=72.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCcee--cCCCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEe
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKV--APIPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKG 376 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~v--s~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~g 376 (457)
....+|+++|.+|||||||+|+|++.....+ .+..|.+.... -.-...+.|+||||...... -..+|+++..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v 93 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF-EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFV 93 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE-EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE-EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999999877655 55555433221 12234789999999854321 1457777774
Q ss_pred ccccCC--cccHHHHHHHHHHh----------cCcceehhhcCCCCCC--CHHHHHHHHH
Q 012726 377 VVRVTN--LEDAAEHIGEVLKR----------VKKEHLKRAYKIKDWV--DENDFLLQLC 422 (457)
Q Consensus 377 vv~~~~--l~~~~~~i~~~L~~----------~~~~~l~~~y~i~~~~--~~~efL~~la 422 (457)
++..+. +......+..++.. ...+.+.+.+++|-.. +.+++.+.++
T Consensus 94 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 153 (199)
T 4bas_A 94 VDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILD 153 (199)
T ss_dssp EETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred EECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhc
Confidence 443322 33333444445443 1567899999998533 3455555443
No 80
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.78 E-value=5.9e-08 Score=87.82 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=76.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.|+||||....... ..+|+++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 100 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL 100 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence 4689999999999999999999976643 233445655544444433 26899999996432211 35677776
Q ss_pred eccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++..+ .+.....++..+.... ..+.+.+.+++|-.. -..+..+.+++..|+
T Consensus 101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (189)
T 2gf9_A 101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGF 159 (189)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCC
Confidence 443322 1222223333333332 567889999998432 124456777777774
No 81
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.77 E-value=5e-08 Score=85.54 Aligned_cols=123 Identities=20% Similarity=0.106 Sum_probs=72.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+.++. .+.|+||||....... ..+|.++.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 83 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL 83 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999765422 122223222223333332 6899999996543222 35677776
Q ss_pred eccccCC--cccHHHHHHHHHHhc-CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV-KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++.... +......+..+.... ..+.+.+.+++|-.. -..+-++.+++..|.
T Consensus 84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 141 (168)
T 1z2a_A 84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKL 141 (168)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCC
Confidence 4433221 222223333333332 567888999988422 123445667777664
No 82
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.76 E-value=4e-09 Score=107.61 Aligned_cols=74 Identities=28% Similarity=0.368 Sum_probs=50.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC------------------CcEEEEecCCcccCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT------------------KRIFLIDCPGVVYQN 365 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~------------------~~i~liDtPGi~~~~ 365 (457)
.++|++||.||||||||+|+|++.. +.++++|++|.... .+..+ ..+.|+||||+....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~-~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC-------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 3689999999999999999999977 57888999887543 22222 368999999998642
Q ss_pred C------C------CccceEEEecccc
Q 012726 366 K------D------SETDIVLKGVVRV 380 (457)
Q Consensus 366 ~------~------~e~dlvL~gvv~~ 380 (457)
. . .++|++++.+...
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~ 107 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCF 107 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecC
Confidence 1 1 3578888755443
No 83
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=98.76 E-value=1.7e-08 Score=100.13 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=80.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc----CCcEEEEecCCcccC-----CCC-----Ccc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL----TKRIFLIDCPGVVYQ-----NKD-----SET 370 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~----~~~i~liDtPGi~~~-----~~~-----~e~ 370 (457)
..++|+++|.||||||||+|+|++.....+++.+|+|.+..+..+ +..+.++||||.... ... ..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 357899999999999999999998766667778899986654432 236899999997543 111 356
Q ss_pred ceEEEeccccCCcccH--HHHHHHHHHhc-----CcceehhhcCCCCCC--CH-------HHHHHHHHHHcCC
Q 012726 371 DIVLKGVVRVTNLEDA--AEHIGEVLKRV-----KKEHLKRAYKIKDWV--DE-------NDFLLQLCKSTGK 427 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~--~~~i~~~L~~~-----~~~~l~~~y~i~~~~--~~-------~efL~~la~r~g~ 427 (457)
|+++..++. .+.... .......+..+ +.+.+.+.+++|-.. .. .+-+..+|...|+
T Consensus 82 d~vi~V~D~-t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~ 153 (307)
T 3r7w_A 82 QVLIHVFDV-ESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF 153 (307)
T ss_dssp SEEEEEEET-TCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CEEEEEEEC-CChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence 777774443 332211 11222223332 568889999998544 22 2446677877774
No 84
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.76 E-value=5.9e-08 Score=85.10 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=73.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++..... ..+..|++.....+.++. .+.++||||....... ..+|.++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV 84 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence 46899999999999999999999755432 345556655444444432 6889999996543221 45677776
Q ss_pred eccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
.++..+. +.....++..+.... ..+.+.+.+++|-. .-..+-...++...|.
T Consensus 85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (170)
T 1r2q_A 85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSL 143 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCC
Confidence 4433221 222223334444433 23456667888832 1123344556666663
No 85
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.75 E-value=5.3e-08 Score=87.86 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=74.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+.++. .+.|+||||....... ..+|+++.
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 4689999999999999999999976542 2344455555444444433 5889999997543322 45677777
Q ss_pred eccccCC--cccHHHHHHHHHHhc---CcceehhhcCCCCCC--CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV--DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~--~~~efL~~la~r~g~ 427 (457)
.++.... +.....++..+.... ..+.+.+.+++|-.. -..+....+++..|.
T Consensus 94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 152 (195)
T 1x3s_A 94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSM 152 (195)
T ss_dssp EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCC
Confidence 4443221 122222333333322 346788899998422 123445567777664
No 86
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.74 E-value=1.4e-08 Score=91.82 Aligned_cols=107 Identities=18% Similarity=0.218 Sum_probs=71.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCCcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
...++|+++|.+|||||||+|+|.+.....+.+.+|.+.....+. +..+.++||||...... -..+|.++..++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d 92 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVID 92 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEET-TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEEC-CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 457899999999999999999999987777777788654322222 45789999999743211 145677777444
Q ss_pred ccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCC
Q 012726 379 RVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDW 411 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~ 411 (457)
..+ .+......+..++.. ...+.+.+.+++|-.
T Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 130 (181)
T 1fzq_A 93 SADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130 (181)
T ss_dssp TTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred CcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence 322 233333444444443 345788899999853
No 87
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.74 E-value=8.4e-08 Score=85.39 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=74.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcCC---cEEEEecCCcccCCC-----CCccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLTK---RIFLIDCPGVVYQNK-----DSETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~~---~i~liDtPGi~~~~~-----~~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++.........|.++.+.. .+.++. .+.++||||...... -..++.+
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 356899999999999999999999877644444455444433 233333 688999999653321 1356777
Q ss_pred EEeccccCC--cccHHHHHHHHHHh--cCcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 374 LKGVVRVTN--LEDAAEHIGEVLKR--VKKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~--l~~~~~~i~~~L~~--~~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
+..++.... +.+...++..+... ...+.+.+.+++|-... ..+....+++..|.
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 148 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGL 148 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCC
Confidence 764433221 12222333333333 24578889999985321 23445667777664
No 88
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.72 E-value=6.5e-08 Score=107.09 Aligned_cols=131 Identities=17% Similarity=0.181 Sum_probs=82.4
Q ss_pred eccCCCChHHHHHHHHHHHHh---hc---CccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCcee-----------
Q 012726 280 SINKSFGKGSLLSVLRQFARL---KS---DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK----------- 342 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~~---~~---~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~----------- 342 (457)
++..+.|.++|+..+.++... .. .-.-.+|+|||.+|+|||||+|+|+|.....++..+ +|+
T Consensus 19 ~~~~~~~~~~li~~inkl~d~l~~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~-~Tr~Pl~l~l~~~~ 97 (772)
T 3zvr_A 19 SHMGNRGMEDLIPLVNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPLVLQLVNST 97 (772)
T ss_dssp ------CGGGHHHHHHHHHHHHHTTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSC-SCSSCEEEEEEECS
T ss_pred cccccccHHHHHHHHHHHHHHHHhcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCcc-ccccceEEEeecCC
Confidence 455667888887777665432 11 123568999999999999999999997764433321 121
Q ss_pred ----------------------------------------EEEEE----EcCCcEEEEecCCcccCC----CC-------
Q 012726 343 ----------------------------------------VWQYI----TLTKRIFLIDCPGVVYQN----KD------- 367 (457)
Q Consensus 343 ----------------------------------------~~~~~----~~~~~i~liDtPGi~~~~----~~------- 367 (457)
+...+ +...++.|+||||+.... ..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~ 177 (772)
T 3zvr_A 98 TEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIR 177 (772)
T ss_dssp SCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHH
T ss_pred cchhheeccCCcccCCHHHHHHHHHHHHhhhcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHH
Confidence 11111 112468999999998732 10
Q ss_pred --------CccceEEEeccccCCcccHHH-HHHHHHHhcCcceehhhcCCCCC
Q 012726 368 --------SETDIVLKGVVRVTNLEDAAE-HIGEVLKRVKKEHLKRAYKIKDW 411 (457)
Q Consensus 368 --------~e~dlvL~gvv~~~~l~~~~~-~i~~~L~~~~~~~l~~~y~i~~~ 411 (457)
.++|++|..+.....+..... .+...+...+.+.+.+++|+|..
T Consensus 178 ~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiDlv 230 (772)
T 3zvr_A 178 DMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLDLM 230 (772)
T ss_dssp HHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTTSS
T ss_pred HHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcccC
Confidence 356888887666555544443 56666777778899999999854
No 89
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.72 E-value=9.3e-08 Score=84.86 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=72.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ....|++|.+. ..+..+. .+.++||||....... ..+|.++
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 86 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADNTFS-GSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI 86 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSCC----CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence 4689999999999999999999987653 44455555443 3344433 5889999996543221 3567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc-CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV-KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..++..+. +......+..+.... ..+.+.+.+++|-.. -..+....++...|.
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (181)
T 3tw8_B 87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGI 145 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCC
Confidence 64433221 111222333333332 256788899998422 223445667777664
No 90
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.71 E-value=8e-08 Score=87.12 Aligned_cols=122 Identities=11% Similarity=0.039 Sum_probs=73.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++...... .+..|++.....+..+ ..+.|+||||....... ..++.++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~ 103 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL 103 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 468999999999999999999998665432 2333544433333332 36789999998543222 35677776
Q ss_pred eccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++ .... .....++..+.... ..+.+.+.+++|-.. -..+....++...|.
T Consensus 104 v~D-~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 162 (193)
T 2oil_A 104 VFD-LTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGL 162 (193)
T ss_dssp EEE-TTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEE-CCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCC
Confidence 443 3222 11222333333322 456788899988421 223455667777764
No 91
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.71 E-value=7.2e-08 Score=83.86 Aligned_cols=119 Identities=15% Similarity=0.074 Sum_probs=69.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
.++|+++|.+|||||||+|+|.+..... ..++++.. ...+..+. .+.++||||....... ..++.++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVD--ECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCS--CCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcc--ccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 4689999999999999999999765422 12222221 22233332 4789999996532211 24566665
Q ss_pred eccccCCc---ccHHHHHHHHHHhc---CcceehhhcCCCCC--CCHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKRV---KKEHLKRAYKIKDW--VDENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~~---~~~~l~~~y~i~~~--~~~~efL~~la~r~g~ 427 (457)
.++ ..+. .+....+..+.... +.+.+...+++|-. ....+....+++..|.
T Consensus 81 v~d-~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 139 (166)
T 2ce2_X 81 VFA-INNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGI 139 (166)
T ss_dssp EEE-TTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC
T ss_pred EEE-CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCC
Confidence 333 3222 12222333333322 56788999999843 2334566777777764
No 92
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.70 E-value=1.4e-07 Score=85.37 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=73.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++... .....|++|.+ ...+.++. .+.|+||||....... ..+|.++
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDTY-TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCC-CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCC-CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 468999999999999999999997654 22334444433 33444443 5889999996543321 3567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g~ 427 (457)
..++..+. +.....++..+.... ..+.+.+.+++|-... ..+....++...|.
T Consensus 94 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 153 (196)
T 3tkl_A 94 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGI 153 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 74433221 122222333333322 4578888999984321 23456677777764
No 93
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.70 E-value=2.6e-08 Score=103.90 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=72.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce------------------------------ecCCCCceeEEEEEEc---C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK------------------------------VAPIPGETKVWQYITL---T 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~------------------------------vs~~pg~T~~~~~~~~---~ 350 (457)
+..++|+++|.+|+|||||+|.|+...... ....+|+|.+..+..+ +
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 457899999999999999999996532111 1112688887654433 3
Q ss_pred CcEEEEecCCcccCC-----CCCccceEEEeccccCCcc-------cHHHHHHHHHHhcCcc-eehhhcCCCC
Q 012726 351 KRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTNLE-------DAAEHIGEVLKRVKKE-HLKRAYKIKD 410 (457)
Q Consensus 351 ~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~l~-------~~~~~i~~~L~~~~~~-~l~~~y~i~~ 410 (457)
..+.|+||||..... ....+|+++..++..+... ........++...+.+ .+...||+|-
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 479999999975432 1146788888676655442 2233344455666666 7889999995
No 94
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.69 E-value=5.3e-08 Score=88.86 Aligned_cols=105 Identities=14% Similarity=0.191 Sum_probs=68.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEecc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGVV 378 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv 378 (457)
+.++|+++|.+|||||||+|+|.+.......+..|.+.. .+.+ +..+.++||||...... -..++.++..++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d 99 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSE--ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD 99 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEE--EEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeE--EEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEE
Confidence 467999999999999999999998776666666666532 2223 34789999999854322 145677777444
Q ss_pred ccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCC
Q 012726 379 RVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDW 411 (457)
Q Consensus 379 ~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~ 411 (457)
..+ .+......+..++.. .+.+.+.+.+|+|-.
T Consensus 100 ~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 137 (190)
T 1m2o_B 100 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAP 137 (190)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred CCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCc
Confidence 332 123333444444432 356789999999853
No 95
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.69 E-value=7e-08 Score=87.34 Aligned_cols=124 Identities=12% Similarity=0.080 Sum_probs=76.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-CC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-KD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++..... ..+..|++.....+.++. .+.|+||||..... .. ..+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 346899999999999999999999755432 233344433334444443 68999999975322 11 356777
Q ss_pred EEeccccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 374 LKGVVRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+..++..+ .+......+..++... ..+.+.+.+++|-.. -..+....++...|.
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 159 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSM 159 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCC
Confidence 77444322 1122333444454443 457888999998532 234556778887764
No 96
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.69 E-value=6.9e-08 Score=88.23 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=75.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC---CcEEEEecCCcccCC-----CCCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQN-----KDSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~-----~~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.|+||||..... .-..+++++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 86 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL 86 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence 3579999999999999999999987643 233444555544444443 268999999975321 1245677777
Q ss_pred eccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++..+. +.....++..+.... ..+.+.+.+++|-.. -..+....++...|+
T Consensus 87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (203)
T 1zbd_A 87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGF 145 (203)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCC
Confidence 4443221 111222333333322 467888999998432 224556677777764
No 97
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.69 E-value=6.6e-08 Score=88.36 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=67.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
.+.++|+++|.+|||||||+|+|++.......+..|.+ ...+.. +..+.++||||....... ..+|.++..+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~ 104 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 104 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEE--EEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCcee--EEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 46799999999999999999999987654433333322 122222 347899999997543221 3567777744
Q ss_pred cccCC--cccHHHHHHHHHHhc---CcceehhhcCCCCCC--CHHHHHHHH
Q 012726 378 VRVTN--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 378 v~~~~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
+..+. +......+..++... +.+.+.+.+++|-.. +.+++.+.+
T Consensus 105 D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~ 155 (192)
T 2b6h_A 105 DSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKL 155 (192)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHT
T ss_pred ECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHh
Confidence 43221 333334444444432 567889999998533 334444333
No 98
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.68 E-value=1.3e-07 Score=84.74 Aligned_cols=123 Identities=15% Similarity=0.032 Sum_probs=71.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE-EEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV-WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~-~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++..... ...|.++.. ...+..+. .+.++||||....... ..+|.++
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVD-DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCS-CCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-CCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 457899999999999999999999754322 111222211 22333333 3567999996543222 2467777
Q ss_pred EeccccC--CcccHHHHHHHHHH---hcCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLK---RVKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~---~~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..++..+ .+......+..++. ..+.+.+.+.+++|-.. -..+....++...|.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 155 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNI 155 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCC
Confidence 6443322 12223333343433 23457888999998422 234456777777764
No 99
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.67 E-value=1.1e-07 Score=84.12 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=74.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+..+. .+.|+||||....... ..+|.++.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 93 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 93 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999766432 334445554444444443 6899999996433211 35677776
Q ss_pred eccccCC--cccHHHHHHHHHHh--cCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKR--VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~--~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++.... +.+...++..+... .+.+.+.+.+++|-.. -..+-+..+++..|.
T Consensus 94 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 152 (179)
T 1z0f_A 94 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGL 152 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 4443221 11222233333332 2456788999998421 123445667777664
No 100
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.67 E-value=1.1e-07 Score=83.27 Aligned_cols=118 Identities=9% Similarity=0.005 Sum_probs=68.1
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE-E-EEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV-W-QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~-~-~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
.++|+++|.+|||||||+|+|++..... ..+.++.. . ..+.++. .+.++||||....... ..++.++.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 80 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVE--KYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL 80 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCC--SCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCC--CCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 5789999999999999999999755422 11222221 1 2233332 5789999996543221 24566665
Q ss_pred eccccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC---CHHHHHHHHHHHc
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV---DENDFLLQLCKST 425 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~---~~~efL~~la~r~ 425 (457)
.++... .+.....++..++.. .+.+.+.+.+++|-.. -..+-...+++..
T Consensus 81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 138 (167)
T 1c1y_A 81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQW 138 (167)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHT
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHc
Confidence 333221 122333344444443 2567889999998422 1234455667665
No 101
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.66 E-value=5.1e-08 Score=89.69 Aligned_cols=106 Identities=17% Similarity=0.194 Sum_probs=63.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
.+..+|+++|.+|||||||+|+|.+.......+..|.+.. .+.+ +..+.++||||...... -..++.++..+
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~--~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 100 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE--ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLV 100 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCE--EEEETTEEEEEEEECC----CCGGGGGGGGCSEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeE--EEEECCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEE
Confidence 3568999999999999999999998776555666665542 2223 34789999999643221 13567777644
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCC
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDW 411 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~ 411 (457)
+..+ .+.+....+..++.. .+.+.+.+.+|+|-.
T Consensus 101 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~ 139 (198)
T 1f6b_A 101 DCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 139 (198)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTST
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcc
Confidence 4322 223333444445443 356789999999853
No 102
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.66 E-value=3.9e-08 Score=86.22 Aligned_cols=103 Identities=17% Similarity=0.118 Sum_probs=63.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCC-----CCCccceEEEecccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQN-----KDSETDIVLKGVVRV 380 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~ 380 (457)
++|+++|.+|||||||+|+|++.......+..|.. ...+.. +..+.++||||..... .-..+|.++..++..
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~ 78 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN--VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSN 78 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC--EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETT
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCcee--EEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECC
Confidence 47999999999999999999876544333333322 122222 3578999999975321 124667777744332
Q ss_pred CC--cccHHHHHHHHHHhc---CcceehhhcCCCCC
Q 012726 381 TN--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDW 411 (457)
Q Consensus 381 ~~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~ 411 (457)
+. +......+..++... +.+.+.+.+++|-.
T Consensus 79 ~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 114 (164)
T 1r8s_A 79 DRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114 (164)
T ss_dssp CGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred CHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence 21 333333444444432 56788899999853
No 103
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.66 E-value=6.3e-08 Score=84.56 Aligned_cols=120 Identities=14% Similarity=0.022 Sum_probs=67.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
+.++|+++|.+|||||||+|+|++.... ...++++... ..+.++. .+.|+||||....... ..++.++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccC--CCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 3578999999999999999999976642 2222332221 2233333 5889999996432111 2456666
Q ss_pred EeccccCCc---ccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTNL---EDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~l---~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..+ +..+. .....++..++... ..+.+.+.+++|-.. -..+-...+++..|.
T Consensus 81 ~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 141 (168)
T 1u8z_A 81 CVF-SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNV 141 (168)
T ss_dssp EEE-ETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC
T ss_pred EEE-ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCC
Confidence 633 33222 22223334444433 467888999988421 123344556666663
No 104
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.65 E-value=9.4e-08 Score=87.33 Aligned_cols=119 Identities=14% Similarity=0.057 Sum_probs=71.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++..... ...|.++.+ ...+.++. .+.|+||||....... ..+|.+
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSN-QYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCS-SCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCC-CCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 356899999999999999999999866432 223333333 33344433 6899999997543221 356777
Q ss_pred EEeccccC--CcccHHHHHHHHHHhc------CcceehhhcCCCCCC--CHHHHHHHHHH
Q 012726 374 LKGVVRVT--NLEDAAEHIGEVLKRV------KKEHLKRAYKIKDWV--DENDFLLQLCK 423 (457)
Q Consensus 374 L~gvv~~~--~l~~~~~~i~~~L~~~------~~~~l~~~y~i~~~~--~~~efL~~la~ 423 (457)
+..++... .+.....++..++... ..+.+.+.+++|-.. ...+.+..++.
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~ 144 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY 144 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH
Confidence 77444322 1223333444444433 457888999998532 22344555665
No 105
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.65 E-value=1.2e-07 Score=85.53 Aligned_cols=120 Identities=14% Similarity=0.039 Sum_probs=68.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCC-----CCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ...++++... ..+..+. .+.|+||||...... -..++.++
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFV--DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCc--cccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4589999999999999999999976542 2233333322 2233332 488999999653221 13566666
Q ss_pred EeccccCCc---ccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTNL---EDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~l---~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~la~r~g~ 427 (457)
..+ .+... .+...++..+... .+.+.+.+.+++|-.. ...+.+..+++..|.
T Consensus 98 ~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 157 (190)
T 3con_A 98 CVF-AINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGI 157 (190)
T ss_dssp EEE-ETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTC
T ss_pred EEE-ECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCC
Confidence 533 33222 2222222233222 2467899999998432 234455667777764
No 106
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.64 E-value=1e-07 Score=87.44 Aligned_cols=122 Identities=16% Similarity=0.048 Sum_probs=69.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE-EEEEEc---CCcEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV-WQYITL---TKRIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~-~~~~~~---~~~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++....... .|.+... ...+.+ .-.+.|+||||....... ..++.++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY-DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC-CCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC-CCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 35789999999999999999999986653221 1211111 222222 235789999996543221 3567777
Q ss_pred EeccccCCc---ccHHHHHHHHHHh---cCcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTNL---EDAAEHIGEVLKR---VKKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~l---~~~~~~i~~~L~~---~~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
..++ ..+. ......+..+... .+.+.+.+.+++|-. .-..+....+++..|.
T Consensus 101 ~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 161 (201)
T 3oes_A 101 LVYS-VTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGA 161 (201)
T ss_dssp EEEE-TTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEe-CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCC
Confidence 6443 3222 1222222222222 245788899999842 2223445677777765
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.64 E-value=8.4e-08 Score=88.55 Aligned_cols=120 Identities=21% Similarity=0.115 Sum_probs=71.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcC----CcEEEEecCCcccCCC------CCccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLT----KRIFLIDCPGVVYQNK------DSETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~----~~i~liDtPGi~~~~~------~~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++... ....+.++.....+.++ ..+.|+||||...... -..++.+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQY--RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCC--CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc--ccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 3568999999999999999999997653 23334444444445544 3589999999743221 2456777
Q ss_pred EEeccccCCcccHH----HHHHHHHHh-----cCcceehhhcCCCCC--CCHHHHHHHHHHHcC
Q 012726 374 LKGVVRVTNLEDAA----EHIGEVLKR-----VKKEHLKRAYKIKDW--VDENDFLLQLCKSTG 426 (457)
Q Consensus 374 L~gvv~~~~l~~~~----~~i~~~L~~-----~~~~~l~~~y~i~~~--~~~~efL~~la~r~g 426 (457)
+.. +++....... .++..++.. ...+.+.+.+|+|-. ...+++.+.+....+
T Consensus 83 i~v-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~ 145 (214)
T 2fh5_B 83 VFV-VDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELN 145 (214)
T ss_dssp EEE-EETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHH
T ss_pred EEE-EECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHH
Confidence 764 4444432222 222233322 246789999999843 345556555555443
No 108
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.64 E-value=1.8e-08 Score=107.61 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=86.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC---------------ceecC------CCCceeE---EEEEEcCCcEEEEecCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV---------------CKVAP------IPGETKV---WQYITLTKRIFLIDCPG 360 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~---------------~~vs~------~pg~T~~---~~~~~~~~~i~liDtPG 360 (457)
...+|+++|.+|+|||||+|+|+.... ..+.+ .+|+|.. ...-.-+..+.|+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 356899999999999999999972111 01111 2455532 22222245789999999
Q ss_pred cccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC-CCCHHHHHHHHHHHcCC
Q 012726 361 VVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD-WVDENDFLLQLCKSTGK 427 (457)
Q Consensus 361 i~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~-~~~~~efL~~la~r~g~ 427 (457)
....... ..+|.++..++....+......+...+...+.+.+...||+|. ..+..+.++.+....|.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~~l~ei~~~l~~ 164 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIELLDEIESILRI 164 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHHHHHHHHHhhCC
Confidence 8654322 4678888877777767666667777788888899999999995 34677888888888875
No 109
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.63 E-value=6.8e-08 Score=87.63 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=71.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEc-CCcEEEEecCCcccCCCC-----CccceEEEe
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
+..++|+++|.+|||||||+|+|++.... ...+..|.+.. .+.. +..+.|+||||....... ..+|+++..
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE--EEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 45789999999999999999999976543 23333443322 2222 347899999997532211 456777774
Q ss_pred ccccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC--CHHHHHHHH
Q 012726 377 VVRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 377 vv~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
++..+ .+......+..++.. .+.+.+.+.+++|-.. +..++.+.+
T Consensus 98 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~ 149 (188)
T 1zd9_A 98 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKM 149 (188)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHT
T ss_pred EECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHh
Confidence 44322 233333444555543 3567889999998543 344444443
No 110
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.63 E-value=1.2e-07 Score=85.79 Aligned_cols=119 Identities=16% Similarity=0.115 Sum_probs=78.2
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+....... ........++...+.....+|++++|+|+.++.+.....+.+++.. .+.|+++|+||+|+.
T Consensus 71 ~~l~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~i~v~nK~Dl~ 147 (195)
T 1svi_A 71 LHFVDVPGYGFAKVSK-SEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKY--YGIPVIVIATKADKI 147 (195)
T ss_dssp EEEEECCCBCCCSSCH-HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGS
T ss_pred EEEEECCCCCccccCH-HHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCEEEEEECcccC
Confidence 4568899964221000 0000113445555555566699999999988876555555566654 478999999999998
Q ss_pred ChhhHHH----HHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 257 PAWATKG----WLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 257 p~~~~~~----wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+...... +.+.+........+.+||+++.|+++|++.|.+.+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 193 (195)
T 1svi_A 148 PKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193 (195)
T ss_dssp CGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence 7654432 22334333345678899999999999999987664
No 111
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.63 E-value=7.2e-08 Score=89.72 Aligned_cols=107 Identities=8% Similarity=0.023 Sum_probs=71.0
Q ss_pred ccceEEEEeecCCCchHHHHHHH-hCCCCceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTL-RTKNVCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L-~~~~~~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|++ .+.......+.+|+|.....+.+.. .+.|+||||....... ..+++++
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 35689999999999999999994 4544556788899888766655543 6889999996543222 3567777
Q ss_pred EeccccC--CcccHHHHHHHHHHhc-CcceehhhcCCCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKRV-KKEHLKRAYKIKD 410 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~~-~~~~l~~~y~i~~ 410 (457)
..++... .+.....++..+...+ +.+.+.+.+++|-
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 131 (221)
T 3gj0_A 93 IMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 131 (221)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcc
Confidence 6443322 1222233344444433 4578888899883
No 112
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.63 E-value=2.2e-07 Score=84.26 Aligned_cols=123 Identities=11% Similarity=0.005 Sum_probs=74.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++...... .+..|++.....+.++. .+.|+||||....... ..++.++.
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 99 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 99 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEE
Confidence 468999999999999999999997665332 23334444444455443 6899999996543221 35677776
Q ss_pred eccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++..+ .+.+....+..+.... ..+.+.+.+++|-.. -..+..+.+++..|.
T Consensus 100 v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 158 (191)
T 2a5j_A 100 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGL 158 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCC
Confidence 443322 1122223333333332 456788999998422 224455677777764
No 113
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.63 E-value=1.9e-07 Score=82.60 Aligned_cols=122 Identities=13% Similarity=0.056 Sum_probs=71.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ....|.++.+. ..+.++. .+.|+||||....... ..++.++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 91 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFD-NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV 91 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 3589999999999999999999975542 22334444333 2333433 6899999996543221 3567777
Q ss_pred EeccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
..++... .+.....++..+.... ..+.+.+.+++|-. .-..+-...++...|.
T Consensus 92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (179)
T 2y8e_A 92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNV 151 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCC
Confidence 6443322 1222333444444332 45678889998832 1123334555666553
No 114
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.63 E-value=9.6e-08 Score=88.41 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC----CcEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT----KRIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~----~~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.|+||||....... ..+|+++
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 89 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI 89 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence 4689999999999999999999975543 345556655544433332 24899999997644322 3567777
Q ss_pred EeccccCCc--ccHHHHHHHHHHhc--CcceehhhcCCCCCCC---HHHHHHHHHHHcC
Q 012726 375 KGVVRVTNL--EDAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---ENDFLLQLCKSTG 426 (457)
Q Consensus 375 ~gvv~~~~l--~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---~~efL~~la~r~g 426 (457)
..++..+.. .+....+..+.... +.+.+.+.+++|-... ..+....++...|
T Consensus 90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (218)
T 4djt_A 90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKN 148 (218)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcC
Confidence 644433211 22222223332222 4578899999985322 2344455555555
No 115
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.62 E-value=2e-07 Score=82.03 Aligned_cols=122 Identities=13% Similarity=0.045 Sum_probs=68.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++..... ..+..|.+.....+.++. .+.++||||...... -..++.++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL 84 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999765421 222223322223444433 578999999643221 145677776
Q ss_pred eccccCCc---ccHHHHHHHHHHh--cCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKR--VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~--~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.++ ..+. .....++..+... ...+.+.+.+++|-.. -..+-...+++..|.
T Consensus 85 v~d-~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 143 (170)
T 1z08_A 85 VYD-ITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGA 143 (170)
T ss_dssp EEE-TTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEE-CcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 443 3222 1122222222222 2356788889988422 123345667777663
No 116
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.62 E-value=6.5e-08 Score=85.01 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=67.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEEEcC---CcEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++..... ....+.++... +..+ ..+.++||||....... ..++.++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~--~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV--ISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE--EEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEE--EEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 35789999999999999999999865421 12222222221 2222 25789999996532211 2456666
Q ss_pred EeccccCC--cccHHHHHHHHHHh----cCcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKR----VKKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~----~~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
..++.... +......+..+.+. -..+.+.+.+++|-. .-..+....++...|.
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~ 141 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKC 141 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCC
Confidence 64433211 22222233223322 146788899998832 1123345566766663
No 117
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.62 E-value=1.3e-07 Score=84.82 Aligned_cols=123 Identities=14% Similarity=0.015 Sum_probs=73.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeE-EEEEEcC------------CcEEEEecCCcccCC-----
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKV-WQYITLT------------KRIFLIDCPGVVYQN----- 365 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~-~~~~~~~------------~~i~liDtPGi~~~~----- 365 (457)
..++|+++|.+|||||||+|+|++.... ...+..|.+.. ...+..+ ..+.|+||||.....
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 89 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA 89 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence 4689999999999999999999975542 12222333222 2233332 268999999985431
Q ss_pred CCCccceEEEeccccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 366 KDSETDIVLKGVVRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 366 ~~~e~dlvL~gvv~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.-..+|+++..++... .+.+...++..+.... ..+.+.+.+++|-.. -..+.+..++...|.
T Consensus 90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 159 (195)
T 3bc1_A 90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGI 159 (195)
T ss_dssp TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 1246777777444322 1222233334444432 567888999998422 224556667777664
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.62 E-value=2.5e-07 Score=84.83 Aligned_cols=121 Identities=13% Similarity=0.054 Sum_probs=72.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCce--eEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET--KVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T--~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ....|.++ .....+.++. .+.|+||||....... ..+|.++
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYT-NDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCC-TTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 4689999999999999999999976542 22233333 3333344443 6899999996543221 3567777
Q ss_pred EeccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..+ +..+. .....++..+.... ..+.+.+.+++|-.. -..+....++...|.
T Consensus 86 lv~-d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 145 (206)
T 2bcg_Y 86 IVY-DVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKM 145 (206)
T ss_dssp EEE-ETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTC
T ss_pred EEE-ECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC
Confidence 744 33322 11222233332322 356788899998532 234556667777764
No 119
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.61 E-value=1.7e-07 Score=82.44 Aligned_cols=122 Identities=14% Similarity=-0.002 Sum_probs=67.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecCCC-CceeEEEEEEcCC---cEEEEecCCcccCCC-C-----CccceEEE
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP-GETKVWQYITLTK---RIFLIDCPGVVYQNK-D-----SETDIVLK 375 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p-g~T~~~~~~~~~~---~i~liDtPGi~~~~~-~-----~e~dlvL~ 375 (457)
.++|+++|.+|||||||+|+|++.........+ +.......+.++. .+.++||||...... . ..++.++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 368999999999999999999875543333222 2112222233332 577999999865432 1 23566665
Q ss_pred eccccC--CcccHHHHHHHHHHhc---CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKRV---KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
.++... .+......+..+.... +.+.+.+.+++|-. .-..+..+.++...|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 141 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSC 141 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCC
Confidence 333221 2333344555555544 46788899999842 2234556777887775
No 120
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.61 E-value=1.4e-08 Score=100.56 Aligned_cols=118 Identities=15% Similarity=0.143 Sum_probs=84.7
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..+.||||++......+. +.+...+..++..+|++++|+|+.+ ++.....+.+.+.. .+.|+|+|+||+
T Consensus 55 ~~~i~~iDTpG~~~~~~~~l~-----~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~--~~~P~ilvlNK~ 126 (301)
T 1ega_A 55 AYQAIYVDTPGLHMEEKRAIN-----RLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE--GKAPVILAVNKV 126 (301)
T ss_dssp TEEEEEESSSSCCHHHHHHHH-----HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS--SSSCEEEEEEST
T ss_pred CeeEEEEECcCCCccchhhHH-----HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh--cCCCEEEEEECc
Confidence 446678899998621111111 3444556678899999999999977 55444445555542 479999999999
Q ss_pred CCCC-hhhHHHHHHHHHhcCC-eeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 254 DLVP-AWATKGWLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 254 DLvp-~~~~~~wl~~l~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
|+.. ......+++.+.+.+. ...+++||+++.|++.|++.|.+.++
T Consensus 127 D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~ 174 (301)
T 1ega_A 127 DNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 174 (301)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 9987 5555666776766554 36788999999999999999987654
No 121
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=98.60 E-value=8.6e-08 Score=86.30 Aligned_cols=120 Identities=19% Similarity=0.107 Sum_probs=79.7
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+....... ........++...+.....+|+|++|+|+.++.......+.+++... +.|+++|+||+|+.
T Consensus 70 ~~i~Dt~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~ 146 (195)
T 3pqc_A 70 YYFVDLPGYGYAKVSK-KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL--NIPFTIVLTKMDKV 146 (195)
T ss_dssp EEEEECCCBSSSCCCH-HHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT--TCCEEEEEECGGGS
T ss_pred EEEEECCCCccccCCh-hhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc--CCCEEEEEEChhcC
Confidence 3467888863211000 00011145566666666778999999999887665555566676653 78999999999998
Q ss_pred ChhhHHHHHHH----HHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 257 PAWATKGWLRV----LSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 257 p~~~~~~wl~~----l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+........+. +.......++.+||+++.|+++|++.|.+.++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 147 KMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK 193 (195)
T ss_dssp CGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence 76544333332 22223356788999999999999999987653
No 122
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.60 E-value=1.4e-07 Score=85.94 Aligned_cols=121 Identities=15% Similarity=0.027 Sum_probs=71.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++... ....++++... ..+.++. .+.|+||||....... ..++.+
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 89 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 89 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCC--CTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence 3468999999999999999999997653 22333333322 2233333 6889999996432111 245666
Q ss_pred EEeccccCCc---ccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 374 LKGVVRVTNL---EDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~l---~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+.. +++.+. .....++..++... ..+.+.+.+++|-.. -..+-+..++...|.
T Consensus 90 i~v-~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 151 (206)
T 2bov_A 90 LCV-FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 151 (206)
T ss_dssp EEE-EETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEE-EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCC
Confidence 653 333332 22233334444443 467889999998422 123345556666663
No 123
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.59 E-value=1.8e-07 Score=82.95 Aligned_cols=121 Identities=15% Similarity=0.083 Sum_probs=69.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCC-----CCCccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++.... ...+..|.+.....+.++. .+.|+||||..... .-..++.++
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 34689999999999999999999976542 2233334333333444443 68999999964321 113467666
Q ss_pred EeccccC--CcccHHHHHHHHHHh------cCcceehhhcCCCCC--CCHHHHHHHHHHH
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKR------VKKEHLKRAYKIKDW--VDENDFLLQLCKS 424 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~------~~~~~l~~~y~i~~~--~~~~efL~~la~r 424 (457)
..++... .+......+..+... .+.+.+.+.+++|-. .-..+-+..+++.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~ 144 (177)
T 1wms_A 85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD 144 (177)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh
Confidence 6333321 122222233333332 345788899999843 2223445556653
No 124
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.59 E-value=1.1e-07 Score=86.98 Aligned_cols=124 Identities=16% Similarity=0.088 Sum_probs=68.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++... ....+.+|++.....+.++. .+.|+||||....... ..+|.++
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 4578999999999999999999997653 34455666665544444443 4889999996432111 3467777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCC--------C-CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDW--------V-DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~--------~-~~~efL~~la~r~g~ 427 (457)
..++.... +.+...++..+.... ..+.+.+.+++|-. . -..+..+.++...|.
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~ 171 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGA 171 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCC
Confidence 64433221 222222222222222 45788899998832 1 124455677777764
No 125
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.58 E-value=1.4e-07 Score=84.06 Aligned_cols=120 Identities=14% Similarity=0.024 Sum_probs=70.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ...++++... ..+.++. .+.|+||||....... ..++.++
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFV--EDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCC--CSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCC--CcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4689999999999999999999976642 2233333222 2233333 5889999996432111 2456666
Q ss_pred EeccccCCc---ccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTNL---EDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~l---~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..+ +..+. .....++..++... ..+.+.+.+++|-.. -..+-+..+++..|.
T Consensus 95 ~v~-d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 155 (187)
T 2a9k_A 95 CVF-SITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNV 155 (187)
T ss_dssp EEE-ETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEE-ECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCC
Confidence 633 33322 22233334444433 467888999988321 223345556666664
No 126
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.58 E-value=2.5e-07 Score=82.09 Aligned_cols=124 Identities=17% Similarity=0.109 Sum_probs=70.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC----CcEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT----KRIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~----~~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++.... ...+..|.......+.++ ..+.|+||||....... ..+|.+
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 35689999999999999999999976542 122233322222333333 36899999996543221 356777
Q ss_pred EEeccccC--CcccHHHHHHHHHHhc----Ccc-eehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 374 LKGVVRVT--NLEDAAEHIGEVLKRV----KKE-HLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~--~l~~~~~~i~~~L~~~----~~~-~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+..++..+ .+.+...++..+.... ..+ .+.+.+++|-.. -..+....+++..|.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGF 147 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCC
Confidence 77444322 1122222222222211 334 677889988421 123445667777664
No 127
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.57 E-value=3e-07 Score=81.54 Aligned_cols=121 Identities=12% Similarity=0.013 Sum_probs=72.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcC---CcEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLT---KRIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~---~~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++... ....+++|... ..+..+ ..+.|+||||....... ..++.+
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYF--VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSC--CSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcC--ccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 3568999999999999999999998643 23344444322 223333 25789999996543222 245666
Q ss_pred EEeccccCCc---ccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 374 LKGVVRVTNL---EDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~l---~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+..+ ++.+. .....++..++... +.+.+.+.+++|-.. -..+....++...|.
T Consensus 85 i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 146 (181)
T 2fn4_A 85 LLVF-AINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHV 146 (181)
T ss_dssp EEEE-ETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEE-eCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 6533 33322 22233344444432 457888999988422 123445667777664
No 128
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.2e-07 Score=85.63 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=68.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++...... .+..|++.....+.++. .+.|+||||...... -..++.++.
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil 91 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI 91 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence 468999999999999999999998665322 23333333333344443 689999999643321 135677776
Q ss_pred eccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
.+ ++.+. .+...++..+.... ..+.+.+.+++|-.. -..+-...++...|.
T Consensus 92 V~-D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 150 (223)
T 3cpj_B 92 VY-DISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQL 150 (223)
T ss_dssp EE-C-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EE-eCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 43 33222 12222233333322 456788888887321 123344556666653
No 129
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.56 E-value=3.9e-08 Score=101.27 Aligned_cols=62 Identities=23% Similarity=0.325 Sum_probs=50.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC------------------CcEEEEecCCccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT------------------KRIFLIDCPGVVY 363 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~------------------~~i~liDtPGi~~ 363 (457)
..+..|++||.||||||||+|+|++...+.+++.|++|.... .+.++ ..+.++||||+..
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 346789999999999999999999988878999999997542 22222 2579999999986
Q ss_pred CC
Q 012726 364 QN 365 (457)
Q Consensus 364 ~~ 365 (457)
..
T Consensus 98 ~~ 99 (392)
T 1ni3_A 98 GA 99 (392)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 130
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.56 E-value=1.8e-07 Score=83.40 Aligned_cols=119 Identities=13% Similarity=0.059 Sum_probs=70.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCCCccceEEEeccccC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKDSETDIVLKGVVRVT 381 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~~e~dlvL~gvv~~~ 381 (457)
..++|+++|.+|||||||+|.|++.......+..|.+.. ..+.++. .+.|+||||...+..-..+|.++..+ ++.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~d~~ilv~-D~~ 83 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAPDAKFSGWADAVIFVF-SLE 83 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEE-EEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEE-ETT
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEE-EEEEECCEEEEEEEEECCCCchhHHHHhCCEEEEEE-ECc
Confidence 468999999999999999999998765444444443322 2233332 57899999975432223567777644 333
Q ss_pred Cc---ccHHHHHHHHHHhc------CcceehhhcCCCCC-----CCHHHHHHHHHHHcC
Q 012726 382 NL---EDAAEHIGEVLKRV------KKEHLKRAYKIKDW-----VDENDFLLQLCKSTG 426 (457)
Q Consensus 382 ~l---~~~~~~i~~~L~~~------~~~~l~~~y~i~~~-----~~~~efL~~la~r~g 426 (457)
+. .+...++ ..+..+ +.+.+.+.+++|-. .-..+-...++...+
T Consensus 84 ~~~s~~~~~~~~-~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~ 141 (178)
T 2iwr_A 84 DENSFQAVSRLH-GQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK 141 (178)
T ss_dssp CHHHHHHHHHHH-HHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHH-HHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc
Confidence 22 1112211 122222 45788889998841 112344556666653
No 131
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.55 E-value=3.5e-07 Score=83.32 Aligned_cols=144 Identities=11% Similarity=-0.054 Sum_probs=79.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceec-CCCCceeEEEEEEcC---CcEEEEecCCcccCC----CCCccceEEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVA-PIPGETKVWQYITLT---KRIFLIDCPGVVYQN----KDSETDIVLK 375 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs-~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~----~~~e~dlvL~ 375 (457)
...++|+++|.+|||||||+|+|++....... +..+++ ....+.++ ..+.|+||||..... .-..++.++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLEST-YRHQATIDDEVVSMEILDTAGQEDTIQREGHMRWGEGFVL 104 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCCCCHHHHHHHHHCSEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCce-EEEEEEECCEEEEEEEEECCCCCcccchhhhhccCCEEEE
Confidence 35789999999999999999999986643221 222221 12223333 258899999986510 0024577766
Q ss_pred eccccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCCC---CHHHHHHHHHHHcCCc-----ccCCcccHHHHHHH
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGKL-----LRVCLFLHFISWYL 442 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~l-----~kgg~pD~~~aa~~ 442 (457)
.++..+ .+.+....+..+... ...+.+.+.+++|-.. -..+-...+++..|.- .+-|+.++..+-..
T Consensus 105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~ 184 (196)
T 2atv_A 105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE 184 (196)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence 443321 122222333333332 3557888999988422 1234455667666631 12233255555555
Q ss_pred HHHHHH
Q 012726 443 FFYDHI 448 (457)
Q Consensus 443 ~l~d~~ 448 (457)
+++...
T Consensus 185 l~~~i~ 190 (196)
T 2atv_A 185 LCREVR 190 (196)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 132
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.54 E-value=1.5e-07 Score=87.10 Aligned_cols=104 Identities=21% Similarity=0.190 Sum_probs=68.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCcee--cCCCCceeEEEEEEcCCcEEEEecCCcccCCCC-----Cc----cce
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKV--APIPGETKVWQYITLTKRIFLIDCPGVVYQNKD-----SE----TDI 372 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~v--s~~pg~T~~~~~~~~~~~i~liDtPGi~~~~~~-----~e----~dl 372 (457)
...++|+++|.+|||||||+|+|.+...... +..|+++.+. ....+.++||||....... .. ++.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 85 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG 85 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----eCceEEEEECCCcHHHHHHHHHHHHhccccCCE
Confidence 4578999999999999999999998664222 2334333222 2457899999998543211 12 566
Q ss_pred EEEecccc---CCcccHHHHHHHHHHh------cCcceehhhcCCCCC
Q 012726 373 VLKGVVRV---TNLEDAAEHIGEVLKR------VKKEHLKRAYKIKDW 411 (457)
Q Consensus 373 vL~gvv~~---~~l~~~~~~i~~~L~~------~~~~~l~~~y~i~~~ 411 (457)
++..++.. +.+.....++..++.. .+.+.+.+.+++|-.
T Consensus 86 ~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~ 133 (218)
T 1nrj_B 86 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF 133 (218)
T ss_dssp EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence 66645444 4555556666666654 356789999999853
No 133
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.54 E-value=1.7e-07 Score=83.97 Aligned_cols=122 Identities=12% Similarity=0.055 Sum_probs=54.8
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcCC---cEEEEecCCcccCC-----CCCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLTK---RIFLIDCPGVVYQN-----KDSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++... .....|+++.+.. .+.++. .+.|+||||..... .-..+|.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF-NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 468999999999999999999997543 2233344444332 333333 68999999974322 124567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..++..+. +.....++..+.... +.+.+.+.+++|-.. -..+-...+++..|.
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 145 (183)
T 2fu5_C 86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGI 145 (183)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCC
Confidence 74433221 112222333333332 457788999998532 123455667777774
No 134
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.54 E-value=1.4e-07 Score=83.77 Aligned_cols=121 Identities=17% Similarity=0.124 Sum_probs=67.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC----CcEEEEecCCcccCCC-----CCccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT----KRIFLIDCPGVVYQNK-----DSETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~----~~i~liDtPGi~~~~~-----~~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++.... ...+..|.+.....+.++ ..+.|+||||...... -..+|.+
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 35689999999999999999999976542 222333333333444443 2689999999643221 1456777
Q ss_pred EEeccccC--CcccHHHHHHHHHHh------cCcceehhhcCCCCCCC----HHHHHHHHHHH
Q 012726 374 LKGVVRVT--NLEDAAEHIGEVLKR------VKKEHLKRAYKIKDWVD----ENDFLLQLCKS 424 (457)
Q Consensus 374 L~gvv~~~--~l~~~~~~i~~~L~~------~~~~~l~~~y~i~~~~~----~~efL~~la~r 424 (457)
+..++..+ .+.....++..+... .+.+.+.+.+++|-... ..+.+..++..
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~ 148 (182)
T 1ky3_A 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKS 148 (182)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHh
Confidence 76443322 112223334444443 34578889999984221 23445566664
No 135
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.54 E-value=2.9e-07 Score=84.78 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=61.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE-EEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW-QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~-~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++...... ..|.++... ..+.++. .+.|+||||...... -..+|+++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEV-YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCc-CCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 467999999999999999999998654322 122222222 2233333 578999999754321 135677776
Q ss_pred eccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDW 411 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~ 411 (457)
.+ ++... ......+...+... +.+.+.+.+++|-.
T Consensus 103 v~-d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 142 (207)
T 2fv8_A 103 CF-SVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142 (207)
T ss_dssp EE-ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGG
T ss_pred EE-ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhh
Confidence 43 33322 22212233344433 56788899998843
No 136
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.54 E-value=7e-08 Score=101.72 Aligned_cols=108 Identities=17% Similarity=0.126 Sum_probs=70.1
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCC------------------------------ceecCCCCceeEEEEEEc---
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNV------------------------------CKVAPIPGETKVWQYITL--- 349 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~------------------------------~~vs~~pg~T~~~~~~~~--- 349 (457)
.+..++|+++|.+|+|||||+|+|++... ......+|+|.+.....+
T Consensus 30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 35679999999999999999999975411 112234677765443332
Q ss_pred CCcEEEEecCCcccCCC-----CCccceEEEeccccCC-------cccHHHHHHHHHHhcC-cceehhhcCCCC
Q 012726 350 TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVTN-------LEDAAEHIGEVLKRVK-KEHLKRAYKIKD 410 (457)
Q Consensus 350 ~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~~-------l~~~~~~i~~~L~~~~-~~~l~~~y~i~~ 410 (457)
+..+.|+||||...... ...+|+++..++..+. +.........++...+ ++.+.+.||+|-
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 35799999999854321 1467888886665443 2233444455566666 458889999984
No 137
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.53 E-value=3.2e-07 Score=83.27 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=72.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcC-C--cEEEEecCCcccCCC-----CCccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLT-K--RIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~-~--~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++..... ..+..+.+... .+..+ . .+.|+||||...... -..++.++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 457899999999999999999999866421 11222222111 22222 2 468999999643221 13567777
Q ss_pred EeccccCCcc---cHHHHHHHHHHhc--CcceehhhcCCCCC-----CCHHHHHHHHHHHcCCc
Q 012726 375 KGVVRVTNLE---DAAEHIGEVLKRV--KKEHLKRAYKIKDW-----VDENDFLLQLCKSTGKL 428 (457)
Q Consensus 375 ~gvv~~~~l~---~~~~~i~~~L~~~--~~~~l~~~y~i~~~-----~~~~efL~~la~r~g~l 428 (457)
..+ +..+.. +........+... ..+.+.+.+++|-. .-..+-...+++..|..
T Consensus 100 ~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 100 LCF-AVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp EEE-ETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred EEE-ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 644 333322 1112233334433 45788889998842 22345667788888764
No 138
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=98.53 E-value=2.8e-08 Score=101.55 Aligned_cols=73 Identities=27% Similarity=0.391 Sum_probs=52.4
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEE----------------------cCCcEEEEecCCcc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YIT----------------------LTKRIFLIDCPGVV 362 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~----------------------~~~~i~liDtPGi~ 362 (457)
++|++||.||||||||+|+|++.. +.++++|++|.... .+. .+..+.|+||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~-~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN-ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH-TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 468999999999999999999865 46778888875321 111 13468999999998
Q ss_pred cCCCC------------CccceEEEecccc
Q 012726 363 YQNKD------------SETDIVLKGVVRV 380 (457)
Q Consensus 363 ~~~~~------------~e~dlvL~gvv~~ 380 (457)
..... ..+|++++.+...
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~ 110 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCF 110 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECC
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECC
Confidence 64321 3567777755443
No 139
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.53 E-value=2.6e-07 Score=84.72 Aligned_cols=106 Identities=15% Similarity=0.152 Sum_probs=63.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE-EEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW-QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~-~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|.+..... ...|.++... ..+.++. .+.|+||||...... -..+|.++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPE-VYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCS-SCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCc-ccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 46899999999999999999999765422 1223222211 2233333 678999999743221 135677776
Q ss_pred eccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCCC
Q 012726 376 GVVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDWV 412 (457)
Q Consensus 376 gvv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~ 412 (457)
.+ ++... ......+...+... +.+.+.+.+++|-..
T Consensus 103 v~-d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 143 (201)
T 2gco_A 103 CF-SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143 (201)
T ss_dssp EE-ETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTT
T ss_pred EE-ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhc
Confidence 43 33322 22212333444443 567888999998543
No 140
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.53 E-value=7.6e-08 Score=103.91 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=43.9
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCc-eecCC-CCceeE-EEEE-----EcCCcEEEEecCCcccCC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPI-PGETKV-WQYI-----TLTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~-pg~T~~-~~~~-----~~~~~i~liDtPGi~~~~ 365 (457)
.+.+.|+|+|.||||||||||+|+|.... .++.. .++|+. |.+. ..+..+.|+||||+....
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 45678999999999999999999998753 23222 234443 3331 124579999999998754
No 141
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.53 E-value=3e-07 Score=84.37 Aligned_cols=122 Identities=8% Similarity=-0.067 Sum_probs=67.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCce--eEEEEEEcCC---cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET--KVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T--~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++..... ...|.++ .....+.++. .+.|+||||....... ..+|.+
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ-DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc-cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 346899999999999999999999866432 2223333 2233344443 6899999997533221 356777
Q ss_pred EEeccccCCc---ccHHHHHHHHHHhc--CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 374 LKGVVRVTNL---EDAAEHIGEVLKRV--KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~l---~~~~~~i~~~L~~~--~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
+..++ +.+. .....++..+.... +.+.+.+.+++|-. .-..+-...+++..|.
T Consensus 102 i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 162 (200)
T 2o52_A 102 LLVYD-ITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENEL 162 (200)
T ss_dssp EEEEE-TTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEEE-CcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCC
Confidence 76443 3222 22223333333322 45678889998842 1112334556666663
No 142
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=98.52 E-value=1.6e-07 Score=98.89 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=72.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCC-----CCccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNK-----DSETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~-----~~e~dlvL~gv 377 (457)
...++|+++|.||||||||+|+|++.......+..|++. ..+.. +..+.|+||||...... -..+|+++..+
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~--~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~ 397 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNV--ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVV 397 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEE--EEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeE--EEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 346899999999999999999999877544444444332 22333 34789999999644321 14678888754
Q ss_pred cccC--CcccHHHHHHHHHHh---cCcceehhhcCCCCC--CCHHHHHHH
Q 012726 378 VRVT--NLEDAAEHIGEVLKR---VKKEHLKRAYKIKDW--VDENDFLLQ 420 (457)
Q Consensus 378 v~~~--~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~~--~~~~efL~~ 420 (457)
+..+ .+.+....+..++.. .+.+.+.+.||+|-. .+..++.+.
T Consensus 398 D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~ 447 (497)
T 3lvq_E 398 DCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEK 447 (497)
T ss_dssp ETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHH
T ss_pred ECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHH
Confidence 4332 233333444445443 256789999999843 234444433
No 143
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.51 E-value=3.6e-07 Score=83.45 Aligned_cols=108 Identities=12% Similarity=0.039 Sum_probs=66.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE----cCCcEEEEecCCcccC-CCC-------Cccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT----LTKRIFLIDCPGVVYQ-NKD-------SETD 371 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~----~~~~i~liDtPGi~~~-~~~-------~e~d 371 (457)
...++|+++|.+|||||||+|.|.+............|....... -.-.+.|+||||.... ... ..++
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTG 97 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCC
Confidence 457899999999999999999999864432111112222112211 1247899999997542 111 2467
Q ss_pred eEEEeccccCCcccHHHHHHHHHHhc-----CcceehhhcCCCCC
Q 012726 372 IVLKGVVRVTNLEDAAEHIGEVLKRV-----KKEHLKRAYKIKDW 411 (457)
Q Consensus 372 lvL~gvv~~~~l~~~~~~i~~~L~~~-----~~~~l~~~y~i~~~ 411 (457)
.++..++..+...+....+..++... +.+.+.+.+|+|-.
T Consensus 98 ~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 98 ALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp EEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred EEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 77775555444334445555555554 56788899999843
No 144
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.51 E-value=3.3e-07 Score=81.77 Aligned_cols=105 Identities=18% Similarity=0.134 Sum_probs=60.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++..... ..+..+.+... .+.++. .+.|+||||....... ..+|.++.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEE-EEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46899999999999999999999654321 11222222111 122222 4679999998543221 35677776
Q ss_pred eccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 376 GVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 376 gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
.++.... +.+........+... ..+.+.+.+++|-
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 121 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 121 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHH
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccc
Confidence 4433221 222221233334333 5678888899873
No 145
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.51 E-value=4e-07 Score=81.90 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=72.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecC-------CCCceeEEEEEE-----cC---CcEEEEecCCcccCCC--
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAP-------IPGETKVWQYIT-----LT---KRIFLIDCPGVVYQNK-- 366 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~-------~pg~T~~~~~~~-----~~---~~i~liDtPGi~~~~~-- 366 (457)
...++|+++|.+|||||||+|.|.+.......+ ....|....+.. ++ ..+.|+||||......
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR 91 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence 346899999999999999999998765433211 011233222221 11 1578999999643221
Q ss_pred ---CCccceEEEeccccCCc----ccHHHHHHHHHHhc-----CcceehhhcCCCCCC-CHHHHHHHHHHHcCC
Q 012726 367 ---DSETDIVLKGVVRVTNL----EDAAEHIGEVLKRV-----KKEHLKRAYKIKDWV-DENDFLLQLCKSTGK 427 (457)
Q Consensus 367 ---~~e~dlvL~gvv~~~~l----~~~~~~i~~~L~~~-----~~~~l~~~y~i~~~~-~~~efL~~la~r~g~ 427 (457)
-..+|.++..++..+.. .+....+..++..+ +.+.+.+.+|+|-.. ...+-+..++...|.
T Consensus 92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCC
T ss_pred HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCC
Confidence 14567777744443211 11123344455543 567889999998432 233445566666665
No 146
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.51 E-value=8.2e-08 Score=87.18 Aligned_cols=123 Identities=10% Similarity=0.002 Sum_probs=75.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++.... ...+..|++.....+... ..+.|+||||...... -..++.++.
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 101 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL 101 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence 4689999999999999999999975532 233445655555544433 2589999999542211 135677776
Q ss_pred eccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 376 GVVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
.++..+ .+......+..+.... ..+.+.+.+++|-. ....+..+.++...|.
T Consensus 102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 160 (191)
T 3dz8_A 102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGF 160 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC
Confidence 443321 1222223333333322 45788889999842 2234556777877775
No 147
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.50 E-value=9.6e-08 Score=103.70 Aligned_cols=109 Identities=17% Similarity=0.102 Sum_probs=71.6
Q ss_pred CccceEEEEeecCCCchHHHHHHHhCCCCceecC------------------------------CCCceeEEEEE--E-c
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAP------------------------------IPGETKVWQYI--T-L 349 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~------------------------------~pg~T~~~~~~--~-~ 349 (457)
.+..++|+++|.+|+|||||+|+|++........ .+|+|.+.... . -
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 3567999999999999999999999763321111 36888654322 2 2
Q ss_pred CCcEEEEecCCcccC-----CCCCccceEEEeccccCC-------cccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 350 TKRIFLIDCPGVVYQ-----NKDSETDIVLKGVVRVTN-------LEDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 350 ~~~i~liDtPGi~~~-----~~~~e~dlvL~gvv~~~~-------l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
+.++.|+||||.... .....+|++|..+..... +.........++..++ ++.+.+.||+|-.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV 318 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 447999999997432 122568888886655432 2223344445566666 4588889999954
No 148
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.50 E-value=1e-06 Score=79.83 Aligned_cols=106 Identities=17% Similarity=0.069 Sum_probs=62.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCC-----CCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ...+.++.+ ...+.++. .+.|+||||...... -..+|.++
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFP--EEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC--CSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 4689999999999999999999976431 222222221 12233332 578999999754321 13567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCCCC
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV 412 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~ 412 (457)
..++.... +..........+... ..+.+.+.+++|-..
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 136 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 64433221 222221222333333 567889999998543
No 149
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.49 E-value=2.5e-07 Score=84.26 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=50.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCcee-E--EEEEEcCC-----cEEEEecCCcccC-----CCCCccc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETK-V--WQYITLTK-----RIFLIDCPGVVYQ-----NKDSETD 371 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~-~--~~~~~~~~-----~i~liDtPGi~~~-----~~~~e~d 371 (457)
..++|+++|.+|||||||+|+|++....-.+..+.++. + ...+.++. .+.|+||||.... ..-..+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 46899999999999999999999873222233333332 2 22334432 5899999998432 2224577
Q ss_pred eEEEeccccCC--cccHHHHHHHHHHh-----cCcceehhhcCCCCCC---C-HHHHHHHHHHHcCC
Q 012726 372 IVLKGVVRVTN--LEDAAEHIGEVLKR-----VKKEHLKRAYKIKDWV---D-ENDFLLQLCKSTGK 427 (457)
Q Consensus 372 lvL~gvv~~~~--l~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~~---~-~~efL~~la~r~g~ 427 (457)
.++..++..+. +.....++..+... ...+.+.+.+++|-.. . ..+-+..+++..|.
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~ 165 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTL 165 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCC
Confidence 77774443221 12222333334333 2457889999998533 1 23455667777763
No 150
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=98.49 E-value=4.3e-07 Score=90.98 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=69.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc-CCcEEEEecCCcccCCCC-----CccceEEEec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL-TKRIFLIDCPGVVYQNKD-----SETDIVLKGV 377 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~~~~~~-----~e~dlvL~gv 377 (457)
.+.++|+++|.+|||||||+|+|++....... |........+.. +..+.|+||||-...... ..+|+++..+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~--pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~ 240 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI--PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 240 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE--EETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEE
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcc--cccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 35789999999999999999999987754332 311112222222 347899999995332211 3567777744
Q ss_pred cc--cCCcccHHHHHHHHHHhc---CcceehhhcCCCCCC--CHHHHHHHH
Q 012726 378 VR--VTNLEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV--DENDFLLQL 421 (457)
Q Consensus 378 v~--~~~l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~--~~~efL~~l 421 (457)
+. .+.+......+..++... +.+.+.+.+|+|-.. +.+++...+
T Consensus 241 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~ 291 (329)
T 3o47_A 241 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKL 291 (329)
T ss_dssp ETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred ECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHh
Confidence 43 233444445555555544 567899999998533 445554444
No 151
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.48 E-value=5.6e-07 Score=81.67 Aligned_cols=121 Identities=12% Similarity=0.041 Sum_probs=68.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCCC----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNKD----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~~----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++.... ...+.++.+. ..+.++. .+.|+||||......- ..++.++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFI--SEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCC--SCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCC--cccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHhhCCEEE
Confidence 35689999999999999999999976532 2222233221 1222332 5789999997543221 3456665
Q ss_pred EeccccCC---cccHHHHHHHHHHh-----cCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVTN---LEDAAEHIGEVLKR-----VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~~---l~~~~~~i~~~L~~-----~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..+ ++.+ +.....++..+... ...+.+.+.+++|-.. -..+-...+|+..|.
T Consensus 97 lv~-d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 159 (187)
T 3c5c_A 97 VVY-SVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGC 159 (187)
T ss_dssp EEE-ETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred EEE-ECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCC
Confidence 533 3322 22223333444443 3567889999988421 123445667777764
No 152
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.48 E-value=3.8e-07 Score=82.59 Aligned_cols=123 Identities=15% Similarity=0.058 Sum_probs=68.8
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++..... ..+..+.+.. ..+..+. .+.|+||||....... ..+|.++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 356899999999999999999999755421 1122222221 1222222 5789999996532211 2456666
Q ss_pred EeccccC--CcccHHHHHHHHHHh----cCcceehhhcCCCCCC--CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKR----VKKEHLKRAYKIKDWV--DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~----~~~~~l~~~y~i~~~~--~~~efL~~la~r~g~ 427 (457)
..++... .+.....++..+... ...+.+.+.+++|-.. ...+....+++..|.
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 145 (199)
T 2gf0_A 85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKC 145 (199)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCC
Confidence 6443321 122222222222221 1457889999998532 223445567777664
No 153
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.48 E-value=5.2e-08 Score=98.63 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=22.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
....|+++|+||||||||+|+|++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 367899999999999999999985
No 154
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.48 E-value=6.5e-07 Score=83.10 Aligned_cols=106 Identities=12% Similarity=0.095 Sum_probs=54.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCCC-----CCccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQNK-----DSETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++..... ....++.+ ...+.++. .+.|+||||...... -..++++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPE--SYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCC--CCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 356899999999999999999999865422 11222221 12233333 588999999643221 1356777
Q ss_pred EEeccccCCccc---HHHHHHHHHHhc--CcceehhhcCCCCCC
Q 012726 374 LKGVVRVTNLED---AAEHIGEVLKRV--KKEHLKRAYKIKDWV 412 (457)
Q Consensus 374 L~gvv~~~~l~~---~~~~i~~~L~~~--~~~~l~~~y~i~~~~ 412 (457)
+..+ ++.+... ........+... +.+.+.+.+++|-..
T Consensus 110 i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 152 (214)
T 2j1l_A 110 LLCF-DVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152 (214)
T ss_dssp EEEE-ETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGS
T ss_pred EEEE-ECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhc
Confidence 7644 3332211 111222233332 457888899988533
No 155
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.48 E-value=2.1e-07 Score=84.78 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=68.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++..... ..+..|++.....+.++. .+.|+||||....... ..+|.++
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999866532 233344444344444443 6899999996532211 3567777
Q ss_pred EeccccCC--cccHHHHHHHHHHhc---CcceehhhcCCCCCC---CHHHHHHHHHHH
Q 012726 375 KGVVRVTN--LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWV---DENDFLLQLCKS 424 (457)
Q Consensus 375 ~gvv~~~~--l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~---~~~efL~~la~r 424 (457)
..++..+. +.+...+ ...+... +.+.+.+.+|+|-.. -..+..+.+++.
T Consensus 104 lV~D~~~~~s~~~~~~~-~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 160 (192)
T 2il1_A 104 LVYDITKKETFDDLPKW-MKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160 (192)
T ss_dssp EEEETTCHHHHHTHHHH-HHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHH-HHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence 74443221 1122222 2233332 456788999988422 123445666665
No 156
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.48 E-value=5.1e-07 Score=83.02 Aligned_cols=124 Identities=13% Similarity=0.061 Sum_probs=71.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
...++|+++|.+|||||||+|+|++..... ..+..|.+.....+.++. .+.|+||||...... -..+|.++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 346899999999999999999998765421 112222222223334443 689999999643211 14567777
Q ss_pred EeccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..++..+ .+.....++..+.... ..+.+.+.+++|-.. -..+-+..++...|.
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 166 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDI 166 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCC
Confidence 7444321 1222233333444332 356788899998432 123445667777776
No 157
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.48 E-value=8.2e-07 Score=80.87 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=67.0
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcCC---cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLTK---RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~~---~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++... ....+++|.+.. .+..+. .+.|+||||....... ..++.+
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGY--PTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIF 95 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCC--CCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEE
Confidence 4578999999999999999999998653 233334443221 223333 4679999998543211 356777
Q ss_pred EEeccccCCcc---cHHHHHHHHHHhc--CcceehhhcCCCCCCC---------------HHHHHHHHHHHcCC
Q 012726 374 LKGVVRVTNLE---DAAEHIGEVLKRV--KKEHLKRAYKIKDWVD---------------ENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~l~---~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~---------------~~efL~~la~r~g~ 427 (457)
+..+ ++.+.. +........+... +.+.+.+.+++|-..+ ..+....++...|.
T Consensus 96 i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 168 (201)
T 2q3h_A 96 LLCF-SVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKA 168 (201)
T ss_dssp EEEE-ETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTC
T ss_pred EEEE-ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCC
Confidence 7644 333221 1111222223322 4578888899884321 23445667777765
No 158
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.48 E-value=3.7e-07 Score=81.77 Aligned_cols=122 Identities=8% Similarity=-0.084 Sum_probs=70.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE--EEEEEcCC---cEEEEecCCcccCC-----CCCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV--WQYITLTK---RIFLIDCPGVVYQN-----KDSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~--~~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++..... ...|.++.+ ...+..+. .+.|+||||..... .-..++.++
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 87 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKD-DSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL 87 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCT-TCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence 46899999999999999999999765422 223443333 23344443 68899999964321 224567777
Q ss_pred EeccccC--CcccHHHHHHHHHHh--cCcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKR--VKKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~--~~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
..++... .+.....++..+... .+.+.+.+.+++|-. .-..+-...+++..|.
T Consensus 88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 147 (186)
T 2bme_A 88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENEL 147 (186)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 6443322 111222233322222 245678889998842 1122334566777664
No 159
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.47 E-value=4.8e-07 Score=96.61 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=80.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc---------------eec------CCCCceeE---EEEEEcCCcEEEEecCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC---------------KVA------PIPGETKV---WQYITLTKRIFLIDCPG 360 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~---------------~vs------~~pg~T~~---~~~~~~~~~i~liDtPG 360 (457)
...+|+++|.+|+|||||+|+|+..... .+. ...|+|.. .....-+..+.|+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 4678999999999999999999853210 111 13344432 12222245789999999
Q ss_pred cccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 361 VVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 361 i~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
....... ..+|.++..++..+.+......+...+...+.+.+...||+|.. .+..+.++.+....|.
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~~~~~~i~~~l~~ 164 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVENELKI 164 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHHHHHHHHHHHHCC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHHHHHHHHHHHhCC
Confidence 8643321 46788888777666665555556666666677899999999953 4566788888877653
No 160
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.47 E-value=1.5e-07 Score=86.02 Aligned_cols=103 Identities=16% Similarity=0.120 Sum_probs=61.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCce--eEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGET--KVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T--~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++..... ...|++| .....+.++. .+.|+||||...... -..+|+++
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTE-SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCC-HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 46899999999999999999999865422 2223333 3333444443 588999999643321 13567777
Q ss_pred EeccccCCcccHHHHHHH---HHHhc---CcceehhhcCCCC
Q 012726 375 KGVVRVTNLEDAAEHIGE---VLKRV---KKEHLKRAYKIKD 410 (457)
Q Consensus 375 ~gvv~~~~l~~~~~~i~~---~L~~~---~~~~l~~~y~i~~ 410 (457)
..++ ..+.. ....+.. .+... ..+.+.+.+|+|-
T Consensus 111 ~v~d-~~~~~-s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl 150 (199)
T 3l0i_B 111 VVYD-VTDQE-SFNNVKQWLQEIDRYASENVNKLLVGNKCDL 150 (199)
T ss_dssp ECC--CCCSH-HHHHHHHHHHHHHSCC-CCSEEEEC-CCSSC
T ss_pred EEEE-CCCHH-HHHHHHHHHHHHHHhccCCCCEEEEEECccC
Confidence 7443 33221 1122222 23333 4577888999984
No 161
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.47 E-value=4.8e-07 Score=83.26 Aligned_cols=121 Identities=16% Similarity=0.105 Sum_probs=70.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|.|.+.... ...+..|.+.. ..+.++. .+.|+||||...... -..+|.++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 5689999999999999999999975532 11222222221 1233332 689999999754321 135677776
Q ss_pred eccccCCcc---cHHHHHHHHHHhc--CcceehhhcCCCCCCC-----------HHHHHHHHHHHcCC
Q 012726 376 GVVRVTNLE---DAAEHIGEVLKRV--KKEHLKRAYKIKDWVD-----------ENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l~---~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~-----------~~efL~~la~r~g~ 427 (457)
.+ +..+.. .........+... ..+.+.+.+++|-..+ ..+-.+.++...|.
T Consensus 87 v~-d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 153 (212)
T 2j0v_A 87 AF-SLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGA 153 (212)
T ss_dssp EE-ETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTC
T ss_pred EE-ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCC
Confidence 44 333221 1111222333333 5678888898874322 23445667777774
No 162
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=98.47 E-value=6.5e-07 Score=83.95 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=73.2
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHH---HHhcCCCcEEEEeec
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNK 252 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~~~~~K~vIlVLNK 252 (457)
...+.|++|+...... +.. ...+..+......+|++|+|+|+.++.+........++ ....++.|+++|+||
T Consensus 77 ~~~l~DtpG~~~~~~~---~~~--~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK 151 (228)
T 2qu8_A 77 KYQIIDTPGLLDRAFE---NRN--TIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNK 151 (228)
T ss_dssp EEEEEECTTTTTSCGG---GCC--HHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEEC
T ss_pred eEEEEECCCCcCcccc---hhh--hHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeC
Confidence 3456789988432111 000 11123334446788999999999887654322222333 322237899999999
Q ss_pred CCCCChhhH----HHHHHHHHhcCC--eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 253 CDLVPAWAT----KGWLRVLSKEYP--SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLvp~~~~----~~wl~~l~~~~p--~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+|+.+.... ....+.+..... ...|.+||+++.|+++|++.|.+.+..
T Consensus 152 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 152 IDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp GGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHH
Confidence 999864321 123333433333 567889999999999999988776643
No 163
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.46 E-value=3e-07 Score=94.62 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=78.7
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCC-CCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT-RCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s-~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
..+.|+||..+ +.......+..+|++|+|+|+.++... ........+... ..+|+|+|+||+|+
T Consensus 77 ~~iiDtPGh~~--------------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl 141 (403)
T 3sjy_A 77 ISFIDAPGHEV--------------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEECCCCGG--------------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGG
T ss_pred EEEEECCCcHH--------------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccc
Confidence 34678888532 334455677899999999999887521 112222233322 34689999999999
Q ss_pred CChhhHHHHHHHHHhc----C--CeeEEEeeccCCCChHHHHHHHHHHHHhhcC--ccceEEEEee
Q 012726 256 VPAWATKGWLRVLSKE----Y--PSLAFHASINKSFGKGSLLSVLRQFARLKSD--KQAISVGFVG 313 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~----~--p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~--~~~i~v~vvG 313 (457)
++......+.+.+.+. . ...++++||+++.|+++|++.|.+.++.... ..+....+..
T Consensus 142 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~ 207 (403)
T 3sjy_A 142 VSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPYRDLSQKPVMLVIR 207 (403)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCCCCTTSCCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCCCCCCCCcEEEEEE
Confidence 9876444443333322 1 2457889999999999999999987654321 2345555544
No 164
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.46 E-value=5.7e-07 Score=81.37 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=73.1
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-c-----------C
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-C-----------K 242 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-~-----------~ 242 (457)
....+.|++|....... ....+..+|+||+|+|+.++.+. ..+..++... . .
T Consensus 63 ~~~~i~Dt~G~~~~~~~--------------~~~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~ 126 (199)
T 4bas_A 63 VAFTVFDMGGAKKFRGL--------------WETYYDNIDAVIFVVDSSDHLRL--CVVKSEIQAMLKHEDIRRELPGGG 126 (199)
T ss_dssp EEEEEEEECCSGGGGGG--------------GGGGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTSHHHHSBCTTSC
T ss_pred EEEEEEECCCCHhHHHH--------------HHHHHhcCCEEEEEEECCcHHHH--HHHHHHHHHHHhChhhhhcccccC
Confidence 33456788886532211 11356789999999999876431 2233333321 1 2
Q ss_pred CCcEEEEeecCCCCChhhHHHHHHHHH-----hcCCeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 243 HKHMILLLNKCDLVPAWATKGWLRVLS-----KEYPSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 243 ~K~vIlVLNKiDLvp~~~~~~wl~~l~-----~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+.|+|+|+||+||.+......+.+.+. +.....+|.+||+++.|+++|++.|.+.+...
T Consensus 127 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 127 RVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp BCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence 789999999999987643333333332 33456778899999999999999998877644
No 165
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.45 E-value=4.1e-07 Score=83.87 Aligned_cols=105 Identities=18% Similarity=0.131 Sum_probs=61.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC-C--cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT-K--RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~-~--~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
.+.++|+++|.+|||||||+|+|++... .+..+++|.+.. .+.++ . .+.|+||||....... ..+|.+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 105 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 105 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEE
Confidence 4579999999999999999999996543 222333443322 22222 2 3559999998543221 456777
Q ss_pred EEeccccCC--cccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 374 LKGVVRVTN--LEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 374 L~gvv~~~~--l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
+..++..+. +.+........+... +.+.+.+.+|+|-
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 146 (204)
T 4gzl_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence 774433221 111111233344443 5678888899873
No 166
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.45 E-value=3.5e-07 Score=80.46 Aligned_cols=89 Identities=18% Similarity=0.186 Sum_probs=62.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEEe
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA 279 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~i 279 (457)
.+..+|++|+|+|+.++.+. ..+..++... ..+.|+++|+||+|+.+......+.+.+... .....+.+
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRI--GISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKT 148 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEEC
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEEC
Confidence 56789999999999877431 2233333321 1578999999999998754334444444321 23467889
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|+++|++.|.+.+.
T Consensus 149 Sa~~~~gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 149 SATKGTGLDEAMEWLVETLK 168 (171)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHh
Confidence 99999999999999987664
No 167
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.44 E-value=7.2e-07 Score=83.02 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=70.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcC---CcEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLT---KRIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~---~~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|++...... .+..|.+.. ..+.++ -.+.|+||||...... -..+|.++.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 468999999999999999999987654221 222222221 122222 2578999999653221 145677777
Q ss_pred eccccCCcccHH---HHHHHHHHhc--CcceehhhcCCCCCC---------------CHHHHHHHHHHHcCC
Q 012726 376 GVVRVTNLEDAA---EHIGEVLKRV--KKEHLKRAYKIKDWV---------------DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~~~l~~~~---~~i~~~L~~~--~~~~l~~~y~i~~~~---------------~~~efL~~la~r~g~ 427 (457)
.++ +.+..... ......+... ..+.+.+.+++|-.. -..+-...+|+..|.
T Consensus 105 v~d-~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 175 (214)
T 3q3j_B 105 CFD-ISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175 (214)
T ss_dssp EEE-TTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTC
T ss_pred EEE-CcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCC
Confidence 443 33322211 2222333333 457888889988432 224456778888876
No 168
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.44 E-value=1.1e-07 Score=100.50 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=68.6
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC------ceecCCCCceeEEEE--EEc-CCcEEEEecCCcccCC-----CCCcc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV------CKVAPIPGETKVWQY--ITL-TKRIFLIDCPGVVYQN-----KDSET 370 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~------~~vs~~pg~T~~~~~--~~~-~~~i~liDtPGi~~~~-----~~~e~ 370 (457)
+.++|+++|.+|+|||||+|+|++... ......+|+|.+..+ +.. +..+.|+||||..... ....+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~~~a 97 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADII 97 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSC
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHHhhC
Confidence 368999999999999999999998661 233456788876532 223 3479999999974321 12467
Q ss_pred ceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWV 412 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~ 412 (457)
|+++..++..+.+.........++...+.+.+...||+|-..
T Consensus 98 D~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~ 139 (482)
T 1wb1_A 98 DLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG 139 (482)
T ss_dssp CEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC
T ss_pred CEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 888887766655544444444567777778899999999543
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.44 E-value=3.9e-08 Score=106.39 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=54.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce------------------------------ecCCCCceeEEEEEEc---C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK------------------------------VAPIPGETKVWQYITL---T 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~------------------------------vs~~pg~T~~~~~~~~---~ 350 (457)
+..++|+++|.+|+|||||+|.|++..... ....+|+|.+.....+ +
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 456889999999999999999996421100 1114688877654443 3
Q ss_pred CcEEEEecCCcccCC-----CCCccceEEEeccccCC-----c--ccHHHHHHHHHHhcCcc-eehhhcCCCCC
Q 012726 351 KRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTN-----L--EDAAEHIGEVLKRVKKE-HLKRAYKIKDW 411 (457)
Q Consensus 351 ~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~-----l--~~~~~~i~~~L~~~~~~-~l~~~y~i~~~ 411 (457)
..+.|+||||..... ....+|++|..+...+. + .........++...+.+ .+.+.||+|-.
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~ 328 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM 328 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence 578999999975321 12456777765555432 2 33334444566666665 77899999853
No 170
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.43 E-value=5.6e-07 Score=83.23 Aligned_cols=122 Identities=9% Similarity=0.036 Sum_probs=70.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCC-----CCCccceEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQN-----KDSETDIVL 374 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~-----~~~e~dlvL 374 (457)
..++|+++|.+|||||||+|+|++.... ....|..+.+. ..+.++. .+.|+||||..... .-..+|.++
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCC-TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCC-CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 4689999999999999999999876542 22223333332 2334433 68999999964321 124567777
Q ss_pred EeccccC--CcccHHHHHHHHHHhc--CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 375 KGVVRVT--NLEDAAEHIGEVLKRV--KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 375 ~gvv~~~--~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
..++... .+......+..+.... ..+.+.+.+|+|-.. -..+-.+.+++..|.
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~ 163 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDM 163 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCC
Confidence 6443321 1112223333333322 356788889988421 123445567777664
No 171
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.43 E-value=3.5e-07 Score=84.52 Aligned_cols=120 Identities=12% Similarity=0.025 Sum_probs=70.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEc-------------CCcEEEEecCCcccCCC---
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITL-------------TKRIFLIDCPGVVYQNK--- 366 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~-------------~~~i~liDtPGi~~~~~--- 366 (457)
..++|+++|.+|||||||+|+|++.... ....|..+.+. ..+.+ ...+.|+||||......
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDNKFN-PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCSCCC-CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcCCCC-cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 4689999999999999999999986542 11122221111 11221 23589999999643211
Q ss_pred --CCccceEEEeccccCCcccHHHHHHHHHHhc-------CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 367 --DSETDIVLKGVVRVTNLEDAAEHIGEVLKRV-------KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 367 --~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~-------~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
-..+|+++..+ +..+. .....+..++..+ ..+.+.+.+++|-.. -..+.++.++...|.
T Consensus 103 ~~~~~~d~iilV~-D~~~~-~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~ 173 (217)
T 2f7s_A 103 AFFRDAMGFLLMF-DLTSQ-QSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGI 173 (217)
T ss_dssp HHHTTCCEEEEEE-ETTCH-HHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred HHhcCCCEEEEEE-ECcCH-HHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCC
Confidence 14567777744 33322 1223334455443 346788899998422 224556777877774
No 172
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.43 E-value=5.3e-08 Score=104.08 Aligned_cols=105 Identities=20% Similarity=0.195 Sum_probs=75.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEE--c--CCcEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYIT--L--TKRIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~--~--~~~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
++.+|+++|.+|+|||||+|+|++.... ....||+|.+..... + +..+.|+||||....... ..+|+++.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~-~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVA-AMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHH-HSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcc-cccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3567999999999999999999976543 335678887653322 2 347899999996432211 35788888
Q ss_pred eccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 376 GVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 376 gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
.+...+............+...+.+.+...||+|.
T Consensus 82 VVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl 116 (537)
T 3izy_P 82 VVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDK 116 (537)
T ss_dssp ECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGG
T ss_pred EEECCCCccHHHHHHHHHHHHcCCcEEEEEecccc
Confidence 67666666555555566777777889999999983
No 173
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.43 E-value=2.1e-07 Score=95.73 Aligned_cols=110 Identities=18% Similarity=0.145 Sum_probs=73.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCC--------CCce--e------cCCCCceeEEEEEEc---CCcEEEEecCCcccC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTK--------NVCK--V------APIPGETKVWQYITL---TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~--------~~~~--v------s~~pg~T~~~~~~~~---~~~i~liDtPGi~~~ 364 (457)
+..++|+++|.+|+|||||+|+|++. .... + ...+|+|.+...+.+ +..+.|+||||....
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45789999999999999999999873 1000 0 113577765433332 357999999998643
Q ss_pred CCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCCCC
Q 012726 365 NKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDWVD 413 (457)
Q Consensus 365 ~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~~~ 413 (457)
... ..+|+++..++..+...........++...+.+ .+...||+|-..+
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~ 143 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDD 143 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCc
Confidence 211 457888886666555544444455566667767 6788999986543
No 174
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.43 E-value=2.5e-07 Score=84.89 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=70.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKC 253 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKi 253 (457)
...+.|++|...... .....+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+
T Consensus 70 ~~~l~Dt~G~~~~~~--------------~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~ 135 (213)
T 3cph_A 70 KLQLWDTAGQERFRT--------------ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKS 135 (213)
T ss_dssp EEEEECCTTGGGGTC--------------CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECT
T ss_pred EEEEEeCCCcHHHHH--------------HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECC
Confidence 345678888643211 12345688999999999977643211 1222223222 2368999999999
Q ss_pred CCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 254 DLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
|+.+..........+...+...+|.+||.++.|+++|++.|.+.+...
T Consensus 136 Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 136 DMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK 183 (213)
T ss_dssp TCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHH
T ss_pred CCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 995433322333333333334577889999999999999998777643
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.42 E-value=2.9e-07 Score=94.59 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=72.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC----c-----------eecCCCCceeEEEEEEc---CCcEEEEecCCcccCC-
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV----C-----------KVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQN- 365 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~----~-----------~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~- 365 (457)
+.++|+++|.+|+|||||+|+|++... . ......|.|.+..++.+ +..+.|+||||.....
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 468999999999999999999986310 0 01124577766544333 3579999999985321
Q ss_pred ----CCCccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCCCC
Q 012726 366 ----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDWVD 413 (457)
Q Consensus 366 ----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~~~ 413 (457)
....+|+++..++..+...........++...+.+ .+...||+|...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~ 134 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQD 134 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSC
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCC
Confidence 22467888886666555443333334566667777 4788999986543
No 176
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.42 E-value=2e-07 Score=102.55 Aligned_cols=123 Identities=13% Similarity=0.071 Sum_probs=80.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhC---CCC--c------eecC------CCCceeEEEE--EE-cCCcEEEEecCCcccC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT---KNV--C------KVAP------IPGETKVWQY--IT-LTKRIFLIDCPGVVYQ 364 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~---~~~--~------~vs~------~pg~T~~~~~--~~-~~~~i~liDtPGi~~~ 364 (457)
...+|+++|.+|+|||||+|+|+. .-. . .+.+ .+|+|..... +. -+..+.|+||||....
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 88 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF 88 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence 457899999999999999999984 210 0 1111 2455543222 12 2457899999999753
Q ss_pred CCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 365 NKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 365 ~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
... ..+|.++..++..+.+......+...+...+.+.+...||+|-. .+..+.++.+....|.
T Consensus 89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~~~~~l~~~l~~ 157 (693)
T 2xex_A 89 TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYSVSTLHDRLQA 157 (693)
T ss_dssp CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHHHHHHHHHHhCC
Confidence 322 35788888777666665555566666777788999999999954 4567788888877664
No 177
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.41 E-value=3.6e-07 Score=94.95 Aligned_cols=108 Identities=16% Similarity=0.139 Sum_probs=66.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC----------ceecCCCC----------------------ceeEEEEE--Ec
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV----------CKVAPIPG----------------------ETKVWQYI--TL 349 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~----------~~vs~~pg----------------------~T~~~~~~--~~ 349 (457)
+..++|+++|.+|+|||||+|+|++... ..++..+| .|.+..+. ..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4568999999999999999999985431 11222333 34332222 22
Q ss_pred -CCcEEEEecCCcccCCC-----CCccceEEEeccccCCcccHHHHHHHHHHhcCc-ceehhhcCCCCC
Q 012726 350 -TKRIFLIDCPGVVYQNK-----DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKK-EHLKRAYKIKDW 411 (457)
Q Consensus 350 -~~~i~liDtPGi~~~~~-----~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~-~~l~~~y~i~~~ 411 (457)
...+.|+||||...... ...+|.++..++..+...........++...+. +.+.+.||+|-.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN 170 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence 34689999999754221 146788888676665554333333445566664 578889999954
No 178
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.38 E-value=2.4e-07 Score=100.28 Aligned_cols=138 Identities=14% Similarity=0.075 Sum_probs=91.7
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+. ..++...+..+|.+|+|+|+.++............. ..+.|+|+|+||+|
T Consensus 71 ~~l~liDTPGh~dF--------------~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~--~~~ipiIvViNKiD 134 (599)
T 3cb4_D 71 YQLNFIDTPGHVDF--------------SYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAM--EMDLEVVPVLNKID 134 (599)
T ss_dssp EEEEEEECCCCGGG--------------HHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHH--HTTCEEEEEEECTT
T ss_pred EEEEEEECCCchHH--------------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH--HCCCCEEEeeeccC
Confidence 34457888887532 234556778899999999998876543322222222 24789999999999
Q ss_pred CCChh---hHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHhhcC--ccceEEEEeec---CCCchHHHHHHH
Q 012726 255 LVPAW---ATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARLKSD--KQAISVGFVGY---PNVGKSSVINTL 326 (457)
Q Consensus 255 Lvp~~---~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~--~~~i~v~vvG~---pNvGKSSliN~L 326 (457)
+.+.. ....|.+.+ ...+..++.+||+++.|+++|++.|.+.++.... ..++...++.. |++|+.++++-+
T Consensus 135 l~~a~~~~v~~ei~~~l-g~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~ 213 (599)
T 3cb4_D 135 LPAADPERVAEEIEDIV-GIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIK 213 (599)
T ss_dssp STTCCHHHHHHHHHHHT-CCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEE
T ss_pred cccccHHHHHHHHHHHh-CCCcceEEEeecccCCCchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEE
Confidence 97532 223333332 1112346788999999999999999888765322 23555555554 899999888777
Q ss_pred hCC
Q 012726 327 RTK 329 (457)
Q Consensus 327 ~~~ 329 (457)
.|.
T Consensus 214 sG~ 216 (599)
T 3cb4_D 214 NGT 216 (599)
T ss_dssp ESC
T ss_pred eCE
Confidence 663
No 179
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.38 E-value=1.7e-06 Score=77.86 Aligned_cols=105 Identities=15% Similarity=0.180 Sum_probs=60.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|+|.+..... ..+..+.+.. ..+.++. .+.|+||||...... -..++.++.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 56899999999999999999999765421 1222222211 1223322 578999999743221 145677766
Q ss_pred eccccCCcccHH---HHHHHHHHhc--CcceehhhcCCCCC
Q 012726 376 GVVRVTNLEDAA---EHIGEVLKRV--KKEHLKRAYKIKDW 411 (457)
Q Consensus 376 gvv~~~~l~~~~---~~i~~~L~~~--~~~~l~~~y~i~~~ 411 (457)
.+ +..+..... ......+... ..+.+.+.+++|-.
T Consensus 85 v~-d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 124 (184)
T 1m7b_A 85 CF-DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 124 (184)
T ss_dssp EE-ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EE-ECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhh
Confidence 43 333221111 1222233332 45788888998853
No 180
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.37 E-value=5.9e-07 Score=82.39 Aligned_cols=141 Identities=14% Similarity=-0.029 Sum_probs=79.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE--EEEEcCC---cEEEEecCCcccCCC------CCccceE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW--QYITLTK---RIFLIDCPGVVYQNK------DSETDIV 373 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~--~~~~~~~---~i~liDtPGi~~~~~------~~e~dlv 373 (457)
..++|+++|.+|||||||+|+|++... .....|++|.+. ..+.++. .+.++||||...... -..++++
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGGLQG-DSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCCEEC-CGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhccC-CccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 468999999999999999999986432 123344444322 2233332 467889999753211 1235666
Q ss_pred EEeccccCC---cccHHHHHHHHHHhc---CcceehhhcCCCCCCC---HHHHHHHHHHHcCCc-----ccCCcccHHHH
Q 012726 374 LKGVVRVTN---LEDAAEHIGEVLKRV---KKEHLKRAYKIKDWVD---ENDFLLQLCKSTGKL-----LRVCLFLHFIS 439 (457)
Q Consensus 374 L~gvv~~~~---l~~~~~~i~~~L~~~---~~~~l~~~y~i~~~~~---~~efL~~la~r~g~l-----~kgg~pD~~~a 439 (457)
+..+ ++.+ +......+..+.... ..+.+.+.+++|-... ..+-...+|+..|.- .+-| ..++.+
T Consensus 101 ilv~-d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~-~~v~~l 178 (195)
T 3cbq_A 101 LIVF-SVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALH-HNTREL 178 (195)
T ss_dssp EEEE-ETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTT-BSHHHH
T ss_pred EEEE-ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCC-CCHHHH
Confidence 6533 3322 223334444444432 5678889999984321 233455677776631 1112 245555
Q ss_pred HHHHHHHHH
Q 012726 440 WYLFFYDHI 448 (457)
Q Consensus 440 a~~~l~d~~ 448 (457)
-..+++...
T Consensus 179 f~~l~~~i~ 187 (195)
T 3cbq_A 179 FEGAVRQIR 187 (195)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
No 181
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.36 E-value=9.5e-07 Score=77.23 Aligned_cols=89 Identities=15% Similarity=0.092 Sum_probs=60.9
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~ 278 (457)
..+..+|++++|+|+.++.+- ..+..++... .++.|+++|+||+|+.+......+.+.+... .....+.
T Consensus 63 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (164)
T 1r8s_A 63 HYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 140 (164)
T ss_dssp HHTTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEE
Confidence 457899999999999876321 2333333321 2478999999999997653333344433221 2345778
Q ss_pred eeccCCCChHHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+||+++.|+++|++.|.+.+
T Consensus 141 ~Sa~~~~gi~~l~~~l~~~i 160 (164)
T 1r8s_A 141 TCATSGDGLYEGLDWLSNQL 160 (164)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred cccCCCcCHHHHHHHHHHHH
Confidence 89999999999999987654
No 182
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=98.36 E-value=4.1e-07 Score=93.52 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=65.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeE---------------------EEE-EEcCCcEEEEecCCc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKV---------------------WQY-ITLTKRIFLIDCPGV 361 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~---------------------~~~-~~~~~~i~liDtPGi 361 (457)
...++|+++|.+|+|||||+|+|++.........++.|.. +.. ......+.|+||||.
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 4578999999999999999999998543221111111110 000 000146899999996
Q ss_pred ccCCCC-----CccceEEEeccccCCc-ccHHHHHHHHHHhcC-cceehhhcCCCCC
Q 012726 362 VYQNKD-----SETDIVLKGVVRVTNL-EDAAEHIGEVLKRVK-KEHLKRAYKIKDW 411 (457)
Q Consensus 362 ~~~~~~-----~e~dlvL~gvv~~~~l-~~~~~~i~~~L~~~~-~~~l~~~y~i~~~ 411 (457)
...... ..+|+++..++..+.. .........++..++ ++.+...||+|-.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~ 142 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV 142 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence 432211 4678888867666554 222333334555554 4788899999854
No 183
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.36 E-value=3.8e-07 Score=79.42 Aligned_cols=109 Identities=19% Similarity=0.141 Sum_probs=73.9
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|...... ....+.......+..+|++++|+|+.+++......+.+++.. .+.|+++|+||+|+.
T Consensus 51 ~~l~Dt~G~~~~~~-------~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 51 FLLVDTGGLWSGDK-------WEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRR--KGKPVILVATKVDDP 121 (161)
T ss_dssp EEEEECGGGCSSSS-------CCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHH--HTCCEEEEEECCCSG
T ss_pred EEEEECCCCCCccc-------hHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHh--cCCCEEEEEECcccc
Confidence 34678888653210 113344555667899999999999998866555556666654 378999999999997
Q ss_pred ChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 257 p~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
+... ....+.+......+.+||+++.|+++|++.|.+.
T Consensus 122 ~~~~---~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 159 (161)
T 2dyk_A 122 KHEL---YLGPLYGLGFGDPIPTSSEHARGLEELLEAIWER 159 (161)
T ss_dssp GGGG---GCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred cchH---hHHHHHhCCCCCeEEEecccCCChHHHHHHHHHh
Confidence 6421 1111222221246788999999999999988754
No 184
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.36 E-value=2.6e-07 Score=94.36 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=65.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-----CccceEEEeccc
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-----SETDIVLKGVVR 379 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~ 379 (457)
+|+++|.+|+|||||+|+|+ ..|.|.+..+..+ +..+.|+||||....... ..+|.++..++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd- 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP- 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-
Confidence 89999999999999999998 3455554433332 347999999998543211 45788888776
Q ss_pred cCCcccHHHHHHHHHHhcCcce-ehhhc-CCCC
Q 012726 380 VTNLEDAAEHIGEVLKRVKKEH-LKRAY-KIKD 410 (457)
Q Consensus 380 ~~~l~~~~~~i~~~L~~~~~~~-l~~~y-~i~~ 410 (457)
.+...........++...+.+. +...+ |+|-
T Consensus 93 ~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 93 PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 5555444444555667777666 77888 9997
No 185
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.35 E-value=1.5e-06 Score=80.52 Aligned_cols=105 Identities=14% Similarity=0.194 Sum_probs=60.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEE-EEEEcCC---cEEEEecCCcccCCC-----CCccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVW-QYITLTK---RIFLIDCPGVVYQNK-----DSETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~-~~~~~~~---~i~liDtPGi~~~~~-----~~e~dlvL~ 375 (457)
..++|+++|.+|||||||+|.|++..... ...|.+.... ..+.++. .+.|+||||...... -..++.++.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDCFPE-NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCS-SCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCC-CcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 56899999999999999999999865421 1122221111 1223332 578999999643221 145677776
Q ss_pred eccccCCcccHH---HHHHHHHHhc--CcceehhhcCCCCC
Q 012726 376 GVVRVTNLEDAA---EHIGEVLKRV--KKEHLKRAYKIKDW 411 (457)
Q Consensus 376 gvv~~~~l~~~~---~~i~~~L~~~--~~~~l~~~y~i~~~ 411 (457)
.+ +..+..... ......+... ..+.+.+.+++|-.
T Consensus 106 v~-D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~ 145 (205)
T 1gwn_A 106 CF-DISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLR 145 (205)
T ss_dssp EE-ETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGG
T ss_pred EE-ECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhc
Confidence 44 333322111 1222233332 45778888998853
No 186
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.35 E-value=4.6e-07 Score=81.15 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=61.8
Q ss_pred HHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc--CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 206 l~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~--~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
....+..+|++|+|+|+.++.+... ..+...+.... .+.|+++|+||+|+.+.. ........+...+....+.+||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 4456789999999999987643222 12222233222 478999999999997532 1112222222222345678899
Q ss_pred cCCCChHHHHHHHHHHHHh
Q 012726 282 NKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~~ 300 (457)
+++.|+++|++.|.+.+..
T Consensus 167 ~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999998776643
No 187
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=98.35 E-value=1.7e-06 Score=92.13 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=73.5
Q ss_pred CCChHHHHHHHHHHHHhh------cCccceEEEEeecCCCchHHHHHHHhCCCCc-eecCCCCceeEEE------EEEc-
Q 012726 284 SFGKGSLLSVLRQFARLK------SDKQAISVGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETKVWQ------YITL- 349 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~~~------~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~~~~------~~~~- 349 (457)
..|+..+.+.+++..... .....++|++||.||||||||+|+|++.... ...+..|.+.... .+.+
T Consensus 13 ~~g~~~i~~yl~~l~~~~~~g~~~~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~ 92 (535)
T 3dpu_A 13 KQGKEAVRQYFQSIEEARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLEND 92 (535)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCCCBCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTC
T ss_pred HhCHHHHHHHHHHHHHhhccCcccccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeec
Confidence 357888888888776521 1234689999999999999999999986542 1222233222111 0111
Q ss_pred ----CCcEEEEecCCcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcC--cceehhhcCCCC
Q 012726 350 ----TKRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVK--KEHLKRAYKIKD 410 (457)
Q Consensus 350 ----~~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~--~~~l~~~y~i~~ 410 (457)
...+.++||||.-..... ..+++++..++ ...... ..++...+.... .+.+.+.+++|-
T Consensus 93 ~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D-~s~~~~-~~~~~~~l~~~~~~~pvilV~NK~Dl 162 (535)
T 3dpu_A 93 DELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDSN-KHYWLRHIEKYGGKSPVIVVMNKIDE 162 (535)
T ss_dssp STTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEEC-GGGGGG-HHHHHHHHHHHSSSCCEEEEECCTTT
T ss_pred CCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEe-CCCchh-HHHHHHHHHHhCCCCCEEEEEECCCc
Confidence 246899999994322211 25677777444 333333 344444555544 678899999984
No 188
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.35 E-value=1.5e-06 Score=77.59 Aligned_cols=89 Identities=17% Similarity=0.106 Sum_probs=62.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEEe
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFHA 279 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~i 279 (457)
.+..+|++++|+|+.++.+ ...+..++... ..+.|+++|+||+||.+......+.+.+... .....+.+
T Consensus 82 ~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 159 (183)
T 1moz_A 82 YYADTAAVIFVVDSTDKDR--MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVAS 159 (183)
T ss_dssp TTTTEEEEEEEEETTCTTT--HHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEE
T ss_pred HhccCCEEEEEEECCCHHH--HHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEc
Confidence 5678999999999987732 23334444332 2578999999999997643333343433221 22457889
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|+++|++.|.+.+.
T Consensus 160 Sa~~~~gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 160 SAIKGEGITEGLDWLIDVIK 179 (183)
T ss_dssp BGGGTBTHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999987764
No 189
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.33 E-value=1.4e-06 Score=91.96 Aligned_cols=111 Identities=18% Similarity=0.157 Sum_probs=76.0
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+ +.+.+...+..+|++|+|+|+.++......+....+.. .+.|.|+|+||+|
T Consensus 73 ~~i~iiDtPGh~~--------------~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~ip~IvviNK~D 136 (482)
T 1wb1_A 73 YRITLVDAPGHAD--------------LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH--FNIPIIVVITKSD 136 (482)
T ss_dssp EEEEECCCSSHHH--------------HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH--TTCCBCEEEECTT
T ss_pred EEEEEEECCChHH--------------HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH--cCCCEEEEEECCC
Confidence 3445788888642 34455667899999999999987654333333333333 3688899999999
Q ss_pred CCChhhHH----HHHHHHHhc--C-CeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 255 LVPAWATK----GWLRVLSKE--Y-PSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 255 Lvp~~~~~----~wl~~l~~~--~-p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+++..... ...+++... + ...++++||.++.|+++|++.|.+.++..
T Consensus 137 l~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~~ 190 (482)
T 1wb1_A 137 NAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNNA 190 (482)
T ss_dssp SSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHHS
T ss_pred cccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcCc
Confidence 99754332 222333332 1 24578899999999999999999887643
No 190
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=2.8e-06 Score=76.50 Aligned_cols=109 Identities=14% Similarity=0.093 Sum_probs=69.9
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEE
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILL 249 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlV 249 (457)
....+.|++|...... ++ ...+..+|++|+|+|+.++.+ ...+..++... ..+.|+++|
T Consensus 60 ~~~~i~Dt~G~~~~~~-----------~~---~~~~~~~d~ii~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv 123 (187)
T 1zj6_A 60 TRFLMWDIGGQESLRS-----------SW---NTYYTNTEFVIVVVDSTDRER--ISVTREELYKMLAHEDLRKAGLLIF 123 (187)
T ss_dssp EEEEEEECCC----CG-----------GG---HHHHTTCCEEEEEEETTCTTT--HHHHHHHHHHHHTSGGGTTCEEEEE
T ss_pred EEEEEEECCCCHhHHH-----------HH---HHHhcCCCEEEEEEeCCCHHH--HHHHHHHHHHHHhchhhCCCeEEEE
Confidence 3445678888743211 11 235688999999999987742 12333333321 257899999
Q ss_pred eecCCCCChhhHHHHHHHHHh----cCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 250 LNKCDLVPAWATKGWLRVLSK----EYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 250 LNKiDLvp~~~~~~wl~~l~~----~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+||+||.+......+.+.+.. ......+.+||+++.|+++|++.|.+.+.
T Consensus 124 ~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (187)
T 1zj6_A 124 ANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177 (187)
T ss_dssp EECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred EECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence 999999764333334444432 23356788999999999999999987764
No 191
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.33 E-value=8.8e-07 Score=79.52 Aligned_cols=108 Identities=17% Similarity=0.067 Sum_probs=71.7
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEe
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLL 250 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVL 250 (457)
...+.|++|...... .....+..+|++++|+|+.++.+. ..+..++... ..+.|+++|+
T Consensus 63 ~~~~~Dt~G~~~~~~--------------~~~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~ 126 (186)
T 1ksh_A 63 KLNIWDVGGQKSLRS--------------YWRNYFESTDGLIWVVDSADRQRM--QDCQRELQSLLVEERLAGATLLIFA 126 (186)
T ss_dssp EEEEEEECCSHHHHT--------------TGGGGCTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCEEEEEE
T ss_pred EEEEEECCCCHhHHH--------------HHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhcCCCcEEEEE
Confidence 344678888653221 112357889999999999876432 2333333321 2478999999
Q ss_pred ecCCCCChhhHHHHHHHHHh----cCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 251 NKCDLVPAWATKGWLRVLSK----EYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 251 NKiDLvp~~~~~~wl~~l~~----~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+||.+........+.+.. ......+.+||+++.|+++|++.|.+.++
T Consensus 127 nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 127 NKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99999865433444444332 22356788999999999999999987765
No 192
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.31 E-value=8e-07 Score=80.36 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=60.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH----hc---CCCcEEEEeecCCCCChhhHHHHHHHHH-hc---CCeeE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE----HC---KHKHMILLLNKCDLVPAWATKGWLRVLS-KE---YPSLA 276 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~----~~---~~K~vIlVLNKiDLvp~~~~~~wl~~l~-~~---~p~~~ 276 (457)
..+..+|++|+|+|+.++.+. ..+..++.. .. .+.|+++|+||+|+........+.+.+. .. ....+
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRM--VVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHI 163 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEE
T ss_pred HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEE
Confidence 356889999999999875321 122222222 11 4789999999999976533344444443 11 23567
Q ss_pred EEeeccCCCChHHHHHHHHHHH
Q 012726 277 FHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 277 f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+.+||+++.|+++|++.|.+.+
T Consensus 164 ~~~Sa~~~~gi~~l~~~l~~~i 185 (190)
T 2h57_A 164 CASDAIKGEGLQEGVDWLQDQI 185 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC
T ss_pred EEccCCCCcCHHHHHHHHHHHH
Confidence 8899999999999999987654
No 193
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.31 E-value=2.1e-07 Score=98.67 Aligned_cols=105 Identities=21% Similarity=0.187 Sum_probs=69.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEEEEc---CCcEEEEecCCcccCCCC-----CccceEEEe
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITL---TKRIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~~~~---~~~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
+...|+++|.+|+|||||+|+|++... ..+..+|+|.+.....+ +..+.|+||||....... ..+|+++..
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v-~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKV-ASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHH-SBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCC-ccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 457899999999999999999987433 23445677765432222 347899999997543221 356777776
Q ss_pred ccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 377 VVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 377 vv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
+...+............+...+.+.+...||+|-
T Consensus 82 Vda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl 115 (501)
T 1zo1_I 82 VAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDK 115 (501)
T ss_dssp EETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSS
T ss_pred eecccCccHHHHHHHHHHHhcCceEEEEEEeccc
Confidence 6554443333333344556667788999999984
No 194
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.30 E-value=1.2e-06 Score=80.94 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=63.2
Q ss_pred HHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhc-----CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEe
Q 012726 206 LYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC-----KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 206 l~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~-----~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~i 279 (457)
....+..+|++|+|+|+.++.+ ...+..++.... .+.|+|+|+||+|+.+.. ......+.+...+....|.+
T Consensus 101 ~~~~~~~~d~iilV~D~~~~~s--~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~ 178 (217)
T 2f7s_A 101 TTAFFRDAMGFLLMFDLTSQQS--FLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178 (217)
T ss_dssp HHHHHTTCCEEEEEEETTCHHH--HHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEE
T ss_pred HHHHhcCCCEEEEEEECcCHHH--HHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEE
Confidence 4456789999999999976532 123445554321 478999999999997532 21233333444444567788
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|+++|++.|.+.+.
T Consensus 179 Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 179 SAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999988876654
No 195
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.30 E-value=2e-06 Score=77.97 Aligned_cols=120 Identities=14% Similarity=0.077 Sum_probs=68.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCCCccceEEEeccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKDSETDIVLKGVVR 379 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~~e~dlvL~gvv~ 379 (457)
...++|+++|.+|||||||+|.+++..... ..+..+ .....+.++. .+.|+||||......-..++.++..+ +
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~i~v~-d 94 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVF-S 94 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEE-E
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhheecCCCEEEEEE-E
Confidence 457899999999999999999998765422 222211 1112333332 46789999964322123456666633 3
Q ss_pred cCCc---ccHHHHHHHHHHh---cCcceehhhcCCCCC-----CCHHHHHHHHHHHcC
Q 012726 380 VTNL---EDAAEHIGEVLKR---VKKEHLKRAYKIKDW-----VDENDFLLQLCKSTG 426 (457)
Q Consensus 380 ~~~l---~~~~~~i~~~L~~---~~~~~l~~~y~i~~~-----~~~~efL~~la~r~g 426 (457)
+.+. .+....+..+... ...+.+.+.+++|-. .-..+-...++...|
T Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~ 152 (184)
T 3ihw_A 95 LEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK 152 (184)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcC
Confidence 3322 2222333333332 234678888998841 123455677788776
No 196
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.30 E-value=8.7e-07 Score=81.06 Aligned_cols=106 Identities=18% Similarity=0.089 Sum_probs=54.7
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCC--CceeEEEEEEcCC---cEEEEecCCcccCC-CC-----CccceE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP--GETKVWQYITLTK---RIFLIDCPGVVYQN-KD-----SETDIV 373 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p--g~T~~~~~~~~~~---~i~liDtPGi~~~~-~~-----~e~dlv 373 (457)
..++|+++|.||||||||+|.+++....-++..+ |.+.....+.++. .+.++||+|..... .- ..++.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 4589999999999999999999864332223233 3222222333433 45789999964311 11 123433
Q ss_pred EE--eccccCCcccHHHHHHHHHHh---cCcceehhhcCCCC
Q 012726 374 LK--GVVRVTNLEDAAEHIGEVLKR---VKKEHLKRAYKIKD 410 (457)
Q Consensus 374 L~--gvv~~~~l~~~~~~i~~~L~~---~~~~~l~~~y~i~~ 410 (457)
+. -+...+.+.........+... -+.+.+.+.+++|-
T Consensus 85 i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl 126 (192)
T 2cjw_A 85 LIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 126 (192)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhh
Confidence 33 222222232222222222222 14578888999884
No 197
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.29 E-value=1.5e-06 Score=87.81 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.7
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNV 331 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~ 331 (457)
..|+|||.+|||||||+|+|++...
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~ 59 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDF 59 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCc
Confidence 3899999999999999999999664
No 198
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.29 E-value=4.7e-07 Score=82.17 Aligned_cols=91 Identities=18% Similarity=0.085 Sum_probs=60.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCCh---hhHHHHHHHHHhcCCee-EEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA---WATKGWLRVLSKEYPSL-AFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~---~~~~~wl~~l~~~~p~~-~f~iSa~ 282 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+||.+. .........+.+.+... .+.+||+
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSV 170 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTT
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecC
Confidence 5678999999999987643211 1223334444457899999999999752 12222233333333333 7788999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|++++++.|.+.+.
T Consensus 171 ~~~gi~~l~~~l~~~i~ 187 (194)
T 3reg_A 171 AKIGLNEVFEKSVDCIF 187 (194)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887664
No 199
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.29 E-value=9.7e-07 Score=77.36 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=61.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+..........+.+.+....+.+||+++.
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 150 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDD 150 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTB
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 35678999999999987643211 1222223222 247899999999999543332223333333334457788999999
Q ss_pred ChHHHHHHHHHHHHh
Q 012726 286 GKGSLLSVLRQFARL 300 (457)
Q Consensus 286 Gi~~Li~~L~~~~~~ 300 (457)
|+++|++.|.+.+..
T Consensus 151 gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 151 NVNEIFFTLAKLIQE 165 (170)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887754
No 200
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.28 E-value=1.8e-06 Score=77.48 Aligned_cols=87 Identities=13% Similarity=0.098 Sum_probs=58.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~ 278 (457)
..+..+|++|+|+|+.++.+. ..+..++... ..+.|+++|+||+||........+.+.+.. ......|.
T Consensus 84 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 161 (181)
T 2h17_A 84 TYYTNTEFVIVVVDSTDRERI--SVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQA 161 (181)
T ss_dssp GGGTTCCEEEEEEETTCTTTH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEE
Confidence 356889999999999887421 2333333321 257899999999999764322333333321 12346788
Q ss_pred eeccCCCChHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~ 296 (457)
+||+++.|+++|++.|.+
T Consensus 162 ~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 162 CCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp CBTTTTBTHHHHHHHHHT
T ss_pred ccCCCCcCHHHHHHHHHh
Confidence 999999999999988753
No 201
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.28 E-value=4.7e-07 Score=80.83 Aligned_cols=101 Identities=14% Similarity=0.027 Sum_probs=63.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++++|+|+.++.+. ..+..++. .. ..+.|+++|+||+||.+.. ........+.+.+....+.+||+
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (181)
T 3t5g_A 74 YSIDINGYILVYSVTSIKSF--EVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151 (181)
T ss_dssp GTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecC
Confidence 45789999999999765321 12222222 11 2478999999999996432 22223334444455667889999
Q ss_pred CCCChHHHHHHHHHHHHhhcCccceEEEEeecCCCchHH
Q 012726 283 KSFGKGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSS 321 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSS 321 (457)
++.|++++++.|.+.+.... |..++||||
T Consensus 152 ~~~~v~~l~~~l~~~~~~~~----------~~~~~gkss 180 (181)
T 3t5g_A 152 ENQTAVDVFRRIILEAEKMD----------GACSQGKSS 180 (181)
T ss_dssp SHHHHHHHHHHHHHHHHTC---------------CCBSC
T ss_pred CCCCHHHHHHHHHHHHHHhc----------CCcccCcCC
Confidence 99999999999987765321 567888886
No 202
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=8.7e-07 Score=80.16 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=60.9
Q ss_pred hhhccCEEEEEeeCCCCCCCC-CHHHHHHHHHh---cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~-~~~l~k~L~~~---~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+..+|++|+|+|+.++.+.. ...+...+... .++.|+|+|+||+|+.+..........+...+....|.+||.++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMN 155 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCC
Confidence 457799999999997654321 12223333332 13689999999999986443333333333333456788999999
Q ss_pred CChHHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFAR 299 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~ 299 (457)
.|+++|++.|.+...
T Consensus 156 ~gi~~l~~~l~~~~~ 170 (199)
T 2gf0_A 156 YNVKELFQELLTLET 170 (199)
T ss_dssp BSHHHHHHHHHHHCS
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999887653
No 203
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.28 E-value=1.7e-06 Score=89.70 Aligned_cols=102 Identities=25% Similarity=0.434 Sum_probs=66.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC--CcEEEEecCCcccCCCC------------Ccc
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT--KRIFLIDCPGVVYQNKD------------SET 370 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~--~~i~liDtPGi~~~~~~------------~e~ 370 (457)
-.|++||.||+|||||+|+|.+... .++..|++|.... .+..+ ..+.++||||+...... ..+
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~-~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era 236 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART 236 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCc-cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence 4589999999999999999999765 6788888886433 34443 56899999998642110 235
Q ss_pred ceEEEeccccCCcccHHHHHH---HHHHh-----cCcceehhhcCCCCCC
Q 012726 371 DIVLKGVVRVTNLEDAAEHIG---EVLKR-----VKKEHLKRAYKIKDWV 412 (457)
Q Consensus 371 dlvL~gvv~~~~l~~~~~~i~---~~L~~-----~~~~~l~~~y~i~~~~ 412 (457)
+.+|..+ +.. .++...+. ..+.. ...+.+..++++|...
T Consensus 237 ~~lL~vv-Dls--~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~ 283 (416)
T 1udx_A 237 RVLLYVL-DAA--DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE 283 (416)
T ss_dssp SEEEEEE-ETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred HhhhEEe-CCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence 6666644 332 23322222 12221 2457788889998654
No 204
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.28 E-value=6.8e-07 Score=79.42 Aligned_cols=93 Identities=13% Similarity=0.101 Sum_probs=60.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.. ........+........+.+||++
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (180)
T 2g6b_A 78 HAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKT 157 (180)
T ss_dssp -CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 346789999999999987643221 1122223222 2478999999999998532 112222223333334567889999
Q ss_pred CCChHHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFAR 299 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~ 299 (457)
+.|+++|++.|.+.+.
T Consensus 158 ~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 158 GLNVDLAFTAIAKELK 173 (180)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887664
No 205
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=98.28 E-value=7.8e-07 Score=96.30 Aligned_cols=122 Identities=19% Similarity=0.077 Sum_probs=72.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCc--------ee------cCCCCceeEEEEEEc--------CCcEEEEecCCccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVC--------KV------APIPGETKVWQYITL--------TKRIFLIDCPGVVY 363 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~--------~v------s~~pg~T~~~~~~~~--------~~~i~liDtPGi~~ 363 (457)
-.+|+++|.+|+|||||+++|+..... .+ ....|.|.....+.+ ...+.|+||||...
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 357999999999999999999852110 01 112455653322221 13688999999865
Q ss_pred CCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 364 QNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 364 ~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
.... ..+|.++..++..+.+..........+...+.+.+...||+|-. .+.++..+.++...|.
T Consensus 84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~ 153 (599)
T 3cb4_D 84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGI 153 (599)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCC
Confidence 4322 35688888777666665444444445556677899999999953 4567778888888775
No 206
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.28 E-value=6e-07 Score=80.08 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=60.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhHH-------------HHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATK-------------GWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~-------------~wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+++|+||+|+.+..... .....+.....
T Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 73 SYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcC
Confidence 56789999999999775322111 1233344333579999999999997643211 11222333333
Q ss_pred e-eEEEeeccCCCChHHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 274 ~-~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
. ..+.+||+++.|+++|++.|.+.+.
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 179 (186)
T 1mh1_A 153 AVKYLECSALTQRGLKTVFDEAIRAVL 179 (186)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence 3 6788999999999999999887764
No 207
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.28 E-value=1.2e-06 Score=96.26 Aligned_cols=123 Identities=18% Similarity=0.134 Sum_probs=79.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC---C--Ccee------cC------CCCceeEEEEEE---cCCcEEEEecCCcccC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK---N--VCKV------AP------IPGETKVWQYIT---LTKRIFLIDCPGVVYQ 364 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~---~--~~~v------s~------~pg~T~~~~~~~---~~~~i~liDtPGi~~~ 364 (457)
...+|+++|.+|+|||||+|+|+.. . ...+ .+ ..|.|....... -+..+.|+||||....
T Consensus 11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df 90 (691)
T 1dar_A 11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF 90 (691)
T ss_dssp GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence 4578999999999999999999831 1 0011 11 234454322221 2457899999998643
Q ss_pred CCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 365 NKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 365 ~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
... ..+|.++..++..+........+...+...+.+.+...||+|.. .+..+.++.+....|.
T Consensus 91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~l~~~l~~ 159 (691)
T 1dar_A 91 TIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLGA 159 (691)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHHHHHHHHHHhCC
Confidence 211 35688888777666665555555566677788899999999953 4577888888887763
No 208
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.27 E-value=6.3e-07 Score=79.79 Aligned_cols=121 Identities=16% Similarity=0.049 Sum_probs=63.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEEE--EEc---CCcEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQY--ITL---TKRIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~~--~~~---~~~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++.... ...++++.+... +.+ .-.+.|+||||....... ..++.+
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFP--TDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC------------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCC--CCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 35689999999999999999999975531 222222221110 111 124669999997543211 356777
Q ss_pred EEeccccCCcc---cHHHHHHHHHHhc--CcceehhhcCCCCCCCH-------------HHHHHHHHHHcCC
Q 012726 374 LKGVVRVTNLE---DAAEHIGEVLKRV--KKEHLKRAYKIKDWVDE-------------NDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~gvv~~~~l~---~~~~~i~~~L~~~--~~~~l~~~y~i~~~~~~-------------~efL~~la~r~g~ 427 (457)
+..++ ..+.. .........+... +.+.+.+.+++|-..+. .+-...+++..|.
T Consensus 84 i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 154 (182)
T 3bwd_D 84 ILAFS-LISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA 154 (182)
T ss_dssp EEEEE-TTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred EEEEE-CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence 76443 32221 1111223333332 45788888998743221 2334567777664
No 209
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.27 E-value=9.5e-07 Score=77.41 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=61.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+|++++|+|+.++.+... ..+...+... .++.|+++|+||+|+.+.. ........+........+.+||+++
T Consensus 74 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (170)
T 1z0j_A 74 MYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNA 153 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTT
T ss_pred hhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 45688999999999977643211 1122233332 3567899999999997532 2233344444445566788999999
Q ss_pred CChHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFA 298 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~ 298 (457)
.|+++|++.|.+.+
T Consensus 154 ~~i~~l~~~i~~~i 167 (170)
T 1z0j_A 154 ININELFIEISRRI 167 (170)
T ss_dssp BSHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999887653
No 210
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=98.27 E-value=1.3e-06 Score=92.19 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=66.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCH-HHHHHHHHhcCCCcEEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~-~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
...+.||+|+.... ..+ ....++.....+..+|+||+|+|+.++...... ....++.. ..++|+|+|+||+|
T Consensus 282 ~l~liDT~G~~~~~-~~v-----e~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~D 354 (476)
T 3gee_A 282 MFRLTDTAGLREAG-EEI-----EHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLD 354 (476)
T ss_dssp EEEEEC--------------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTT
T ss_pred EEEEEECCCCCcch-hHH-----HHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcC
Confidence 34578899985421 100 022234456678999999999999988754221 23334433 23799999999999
Q ss_pred CCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 255 LVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+.+...... +.+.+.....++.+||+++.|+++|++.|.+.+.
T Consensus 355 l~~~~~~~~--~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 355 RAANADALI--RAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp SCTTTHHHH--HHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred CCCccchhH--HHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 987654321 2233321134677899999999999999987764
No 211
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.27 E-value=1.6e-06 Score=78.22 Aligned_cols=94 Identities=11% Similarity=0.119 Sum_probs=62.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeeccCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.... ......+...+....+.+||+++
T Consensus 84 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 163 (196)
T 3tkl_A 84 SYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNA 163 (196)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTC
T ss_pred HHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCC
Confidence 45688999999999987543111 1122223222 236899999999999764321 22233444444456788899999
Q ss_pred CChHHHHHHHHHHHHhh
Q 012726 285 FGKGSLLSVLRQFARLK 301 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~~ 301 (457)
.|++++++.|.+.+...
T Consensus 164 ~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 164 TNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999988777543
No 212
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.27 E-value=1e-06 Score=79.76 Aligned_cols=89 Identities=18% Similarity=0.151 Sum_probs=60.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~ 278 (457)
..+..+|++|+|+|+.++.+. ..+..++... ..+.|+++|+||+|+.+......+.+.+... .....|.
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKI--EASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHHccCCEEEEEEECCCHHHH--HHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEE
Confidence 456889999999999876321 2333333321 2578999999999998643334444443321 2345678
Q ss_pred eeccCCCChHHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+||+++.|+++|++.|.+.+
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~ 183 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHS 183 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999887654
No 213
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.26 E-value=5.9e-07 Score=79.97 Aligned_cols=90 Identities=12% Similarity=-0.008 Sum_probs=59.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhH-----------HHHHHHHHhcCC-e
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-----------KGWLRVLSKEYP-S 274 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~-----------~~wl~~l~~~~p-~ 274 (457)
.+..+|++++|+|+.++.+.... .+...+....++.|+++|+||+|+.+.... ..-...+...+. .
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 155 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCS
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCC
Confidence 56789999999999765432111 123333333357899999999999754321 111222333333 3
Q ss_pred eEEEeeccCCCChHHHHHHHHHHH
Q 012726 275 LAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 275 ~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
..+.+||+++.|+++|++.|.+.+
T Consensus 156 ~~~~~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 156 AYIECSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999887654
No 214
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.26 E-value=1.1e-06 Score=80.25 Aligned_cols=91 Identities=14% Similarity=0.139 Sum_probs=60.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc-----CCCcEEEEeecCCCCChhhHHHHHHHHHh-cCCeeEEEeec
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHASI 281 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~-----~~K~vIlVLNKiDLvp~~~~~~wl~~l~~-~~p~~~f~iSa 281 (457)
.+..+|++|+|+|+.++.+... ..+...+.... .+.|+++|+||+|+.+..........+.. ......|.+||
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 156 (207)
T 1vg8_A 77 FYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSA 156 (207)
T ss_dssp GGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBT
T ss_pred HHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeC
Confidence 5678999999999987643211 11112222211 36899999999999854332222333333 44456788999
Q ss_pred cCCCChHHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~ 299 (457)
+++.|+++|++.|.+.+.
T Consensus 157 ~~g~gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 157 KEAINVEQAFQTIARNAL 174 (207)
T ss_dssp TTTBSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999877664
No 215
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.25 E-value=1.2e-06 Score=77.42 Aligned_cols=92 Identities=14% Similarity=0.027 Sum_probs=59.9
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.. ........+.+......+.+||++
T Consensus 82 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T 1z0f_A 82 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKT 161 (179)
T ss_dssp HHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTT
T ss_pred HHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 446678999999999987643221 1122223322 2578999999999996432 111222233333445678889999
Q ss_pred CCChHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFA 298 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~ 298 (457)
+.|++++++.|.+.+
T Consensus 162 ~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 162 GENVEDAFLEAAKKI 176 (179)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999998887654
No 216
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.25 E-value=1.5e-06 Score=75.34 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=60.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHhc--CCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHC--KHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~~--~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|.+++|+|+.++.+. ..+..+ +.... .+.|+++|+||+|+.+..........+.+.+...++.+||.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T 2ce2_X 70 QYMRTGEGFLCVFAINNTKSF--EDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAK 147 (166)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTT
T ss_pred HhhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCC
Confidence 356689999999999765321 122222 22222 37899999999999874333333344444444567788999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|++++++.|.+.+.
T Consensus 148 ~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 148 TRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887653
No 217
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.25 E-value=2.5e-06 Score=93.98 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=81.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC--c---------eecC------CCCceeEEEEEEc---C-------CcEEEEe
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV--C---------KVAP------IPGETKVWQYITL---T-------KRIFLID 357 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~--~---------~vs~------~pg~T~~~~~~~~---~-------~~i~liD 357 (457)
...+|+++|.+|+|||||++.|+.... . .+.+ ..|.|.......+ + ..+.|||
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD 88 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID 88 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence 356899999999999999999974211 0 1111 2455543322221 2 4689999
Q ss_pred cCCcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC-CCCHHHHHHHHHHHcCC
Q 012726 358 CPGVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD-WVDENDFLLQLCKSTGK 427 (457)
Q Consensus 358 tPGi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~-~~~~~efL~~la~r~g~ 427 (457)
|||....... ..+|.++..++..+........+...+...+.+.+...||+|. ..+..+.++.+....|.
T Consensus 89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~~~~~l~~~l~~ 164 (704)
T 2rdo_7 89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKTRLGA 164 (704)
T ss_pred CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHHHHHHHHHHhCC
Confidence 9998653221 3578888877766665544455555666667888999999995 34667788888777654
No 218
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.25 E-value=5.8e-07 Score=97.25 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=69.8
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCC-CceeE--EEEEEcC-------------------CcEEEEecCCcc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP-GETKV--WQYITLT-------------------KRIFLIDCPGVV 362 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p-g~T~~--~~~~~~~-------------------~~i~liDtPGi~ 362 (457)
+...|+++|++|+|||||+|+|++.... ...| |.|.. ..+.... ..+.|+||||..
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe 81 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE 81 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence 4578999999999999999999875331 1122 44432 1222110 148999999985
Q ss_pred cCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 363 YQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 363 ~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
..... ..+|.++..++..+.+.........++...+.+.+...||+|-
T Consensus 82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl 134 (594)
T 1g7s_A 82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDR 134 (594)
T ss_dssp CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccc
Confidence 43322 3478888877766666555555566777788899999999984
No 219
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.25 E-value=1e-06 Score=77.11 Aligned_cols=91 Identities=13% Similarity=0.134 Sum_probs=59.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
..+..+|++++|+|+.++.+... ..+...+....++.|+++|+||+|+.+.. ......+.+........+.+||+++.
T Consensus 73 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T 1z2a_A 73 AYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDL 152 (168)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCC
Confidence 35678999999999987642211 11222232223578999999999997532 11222233333334567889999999
Q ss_pred ChHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFA 298 (457)
Q Consensus 286 Gi~~Li~~L~~~~ 298 (457)
|+++|++.|.+.+
T Consensus 153 ~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 153 NVSEVFKYLAEKH 165 (168)
T ss_dssp SSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987654
No 220
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.25 E-value=1.4e-06 Score=77.41 Aligned_cols=89 Identities=13% Similarity=0.117 Sum_probs=59.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+. ..+..++. .. .++.|+++|+||+|+.+.. ........+........+.+||+
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (181)
T 2efe_B 80 MYYRGAAAAIIVFDVTNQASF--ERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAK 157 (181)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSS
T ss_pred HHhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 356789999999999776431 22233332 22 2478899999999997532 11222233333445567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+.+
T Consensus 158 ~g~gi~~l~~~l~~~~ 173 (181)
T 2efe_B 158 TATNVKEIFYEIARRL 173 (181)
T ss_dssp SCTTHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999887654
No 221
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.24 E-value=7.8e-07 Score=91.60 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=68.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCce--ecCCCCceeEEEEE--Ec------------------------CCcEEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCK--VAPIPGETKVWQYI--TL------------------------TKRIFL 355 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~--vs~~pg~T~~~~~~--~~------------------------~~~i~l 355 (457)
...++|+++|.+|+|||||+|+|++..... ....+|+|.+..+. .+ ...+.|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 346899999999999999999999754322 22346777643221 11 146899
Q ss_pred EecCCcccCC-----CCCccceEEEeccccCCc-cc-HHHHHHHHHHhcC-cceehhhcCCCCCC
Q 012726 356 IDCPGVVYQN-----KDSETDIVLKGVVRVTNL-ED-AAEHIGEVLKRVK-KEHLKRAYKIKDWV 412 (457)
Q Consensus 356 iDtPGi~~~~-----~~~e~dlvL~gvv~~~~l-~~-~~~~i~~~L~~~~-~~~l~~~y~i~~~~ 412 (457)
+||||..... ....+|+++..++..+.. .. ..+++. ++..++ ++.+...||+|-..
T Consensus 88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~~~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLM-ALQIIGQKNIIIAQNKIELVD 151 (410)
T ss_dssp EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHH-HHHHHTCCCEEEEEECGGGSC
T ss_pred EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHH-HHHHcCCCcEEEEEECccCCC
Confidence 9999974321 124568888867666554 22 223333 444444 46778899998543
No 222
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.24 E-value=1.5e-06 Score=76.96 Aligned_cols=92 Identities=11% Similarity=0.065 Sum_probs=60.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc-----CCCcEEEEeecCCCCChhhHHHHHHHHHh-cCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAWATKGWLRVLSK-EYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~-----~~K~vIlVLNKiDLvp~~~~~~wl~~l~~-~~p~~~f~iS 280 (457)
..+..+|++++|+|+.++.+... ..+...+.... .+.|+++|+||+|+.+..........+.. ......+.+|
T Consensus 75 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 154 (177)
T 1wms_A 75 PFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETS 154 (177)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECC
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEe
Confidence 46788999999999987643211 11222222211 56899999999999743322222233323 4445678899
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~ 299 (457)
|+++.|++++++.|.+.+.
T Consensus 155 a~~~~gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 155 AKDATNVAAAFEEAVRRVL 173 (177)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877654
No 223
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.24 E-value=2.2e-06 Score=76.92 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=62.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCH----HHHHHHHHh---cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCe-eEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCH----HLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPS-LAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~----~l~k~L~~~---~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~-~~f~i 279 (457)
..+..+|++|+|+|+.++....+. .+.+++... ..+.|+++|+||+||.+........+. .+.+.. ..+.+
T Consensus 93 ~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~-~~~~~~~~~~~~ 171 (198)
T 3t1o_A 93 LILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAV-VDPEGKFPVLEA 171 (198)
T ss_dssp HHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHH-HCTTCCSCEEEC
T ss_pred HHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHH-HHhcCCceEEEE
Confidence 367899999999999754322222 233444331 257899999999999765333333333 334444 67889
Q ss_pred eccCCCChHHHHHHHHHHHHh
Q 012726 280 SINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~~ 300 (457)
||+++.|++++++.|.+.+..
T Consensus 172 Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 172 VATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp BGGGTBTHHHHHHHHHHHHHH
T ss_pred ecCCCcCHHHHHHHHHHHHHH
Confidence 999999999999998776643
No 224
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.24 E-value=1.6e-06 Score=78.35 Aligned_cols=142 Identities=8% Similarity=-0.021 Sum_probs=71.6
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceecC-CCCceeEEEEEEc--------CCcEEEEecCCcccCCCC-----Cccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVAP-IPGETKVWQYITL--------TKRIFLIDCPGVVYQNKD-----SETD 371 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~-~pg~T~~~~~~~~--------~~~i~liDtPGi~~~~~~-----~e~d 371 (457)
.++|+++|.+|||||||+|.|.+......+. .|.+..+.....+ ...+.++||||......- ..++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 4689999999999999999999853222222 2222233322211 236889999996432111 2345
Q ss_pred eEEEeccccCC---cccHHHHHHHHHHhc-CcceehhhcCCCCCCCH------HHHHHHHHHHcCCc---------ccCC
Q 012726 372 IVLKGVVRVTN---LEDAAEHIGEVLKRV-KKEHLKRAYKIKDWVDE------NDFLLQLCKSTGKL---------LRVC 432 (457)
Q Consensus 372 lvL~gvv~~~~---l~~~~~~i~~~L~~~-~~~~l~~~y~i~~~~~~------~efL~~la~r~g~l---------~kgg 432 (457)
+++..++-.+. +......+..+.... +.+.+.+.+++|-.+.. .+..+.+|...|+. .+.|
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 161 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE 161 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence 55542222221 222223333333333 46778888998853321 12334455555542 1233
Q ss_pred cccHHHHHHHHHHHH
Q 012726 433 LFLHFISWYLFFYDH 447 (457)
Q Consensus 433 ~pD~~~aa~~~l~d~ 447 (457)
...+....+.+++..
T Consensus 162 ~~~~~~l~~~i~~~~ 176 (184)
T 2zej_A 162 SDALAKLRKTIINES 176 (184)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHH
Confidence 334555556555544
No 225
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.24 E-value=1e-06 Score=79.36 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=60.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHh--cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEH--CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~--~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++++|+|+.++.+. ..+..+ +... ..+.|+++|+||+|+.+..........+.+.+...++.+||.
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 165 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSF--ADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAK 165 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HhhCcCCEEEEEEECcCHHHH--HHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCC
Confidence 467889999999999776421 122222 2222 137899999999999763322222333333334457788999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|++++++.|.+.+..
T Consensus 166 ~~~gi~~l~~~l~~~~~~ 183 (190)
T 3con_A 166 TRQGVEDAFYTLVREIRQ 183 (190)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998877654
No 226
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.23 E-value=9.3e-07 Score=80.39 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=60.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hc----CCCcEEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HC----KHKHMIL 248 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~----~~K~vIl 248 (457)
...+.|++|.... .......+..+|++|+|+|+.++.+. ..+..++.. .. .+.|+++
T Consensus 74 ~~~l~Dt~G~~~~--------------~~~~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piil 137 (208)
T 2yc2_C 74 ELFLLDTAGSDLY--------------KEQISQYWNGVYYAILVFDVSSMESF--ESCKAWFELLKSARPDRERPLRAVL 137 (208)
T ss_dssp EEEEEETTTTHHH--------------HHHHSTTCCCCCEEEEEEETTCHHHH--HHHHHHHHHHHHHCSCTTSCCEEEE
T ss_pred EEEEEECCCcHHH--------------HHHHHHHHhhCcEEEEEEECCCHHHH--HHHHHHHHHHHHhhcccccCCcEEE
Confidence 3456778876422 12233457889999999999776421 223333332 22 4789999
Q ss_pred EeecCCCCC-hh-hHHHHHHHHHhcCCeeEEEeeccC-CCChHHHHHHHHHHHH
Q 012726 249 LLNKCDLVP-AW-ATKGWLRVLSKEYPSLAFHASINK-SFGKGSLLSVLRQFAR 299 (457)
Q Consensus 249 VLNKiDLvp-~~-~~~~wl~~l~~~~p~~~f~iSa~~-~~Gi~~Li~~L~~~~~ 299 (457)
|+||+|+.+ .. ........+.+.+....+.+||++ +.|+++|++.|.+.+.
T Consensus 138 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp EEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHH
T ss_pred EEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence 999999986 32 212223333344456778899999 9999999998877654
No 227
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.23 E-value=1.5e-06 Score=89.56 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=66.4
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCcee--cCCCCceeEEEEE--Ec------------------------CCcEEE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKV--APIPGETKVWQYI--TL------------------------TKRIFL 355 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~v--s~~pg~T~~~~~~--~~------------------------~~~i~l 355 (457)
+..++|+++|.+|+|||||+|+|++...... ...+|.|.+..+. .+ ...+.|
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 3568999999999999999999997543222 2246777643211 10 146899
Q ss_pred EecCCcccC-----CCCCccceEEEeccccCCc-cc-HHHHHHHHHHhcC-cceehhhcCCCC
Q 012726 356 IDCPGVVYQ-----NKDSETDIVLKGVVRVTNL-ED-AAEHIGEVLKRVK-KEHLKRAYKIKD 410 (457)
Q Consensus 356 iDtPGi~~~-----~~~~e~dlvL~gvv~~~~l-~~-~~~~i~~~L~~~~-~~~l~~~y~i~~ 410 (457)
+||||.... .....+|+++..++..+.. .. ..+++. ++..++ ++.+...||+|-
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~-~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM-ALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHTTCCCEEEEEECTTS
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH-HHHHcCCCeEEEEEEccCC
Confidence 999996432 1224568888866666554 22 223333 445554 467889999984
No 228
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.23 E-value=2.6e-07 Score=96.82 Aligned_cols=108 Identities=18% Similarity=0.086 Sum_probs=66.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCC--Cc----------------------eecC------CCCceeEEEEE--Ec-C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKN--VC----------------------KVAP------IPGETKVWQYI--TL-T 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~--~~----------------------~vs~------~pg~T~~~~~~--~~-~ 350 (457)
+..++|+++|.+|+|||||+|+|++.. .. .+.+ .+|+|.+..+. .. +
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~ 84 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence 356899999999999999999998531 00 0001 25777644322 22 3
Q ss_pred CcEEEEecCCcccCC-----CCCccceEEEeccccCCccc-------HHHHHHHHHHhcCc-ceehhhcCCCCC
Q 012726 351 KRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTNLED-------AAEHIGEVLKRVKK-EHLKRAYKIKDW 411 (457)
Q Consensus 351 ~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~l~~-------~~~~i~~~L~~~~~-~~l~~~y~i~~~ 411 (457)
..+.|+||||..... ....+|+++..++..+.... .......++...+. +.+...||+|-.
T Consensus 85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV 158 (458)
T ss_dssp EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 478999999964321 12567888876655433211 22223344555564 478889999853
No 229
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.22 E-value=1.5e-06 Score=78.64 Aligned_cols=94 Identities=14% Similarity=0.132 Sum_probs=62.0
Q ss_pred HHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 206 l~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
....+..+|++|+|+|+.++.+... ..+.+.+... ..+.|+++|+||+|+.+.. ........+........|.+||+
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 168 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAK 168 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECC
Confidence 3456789999999999976532211 1222333322 2478999999999996432 22222333333334567889999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+++|++.|.+.+.
T Consensus 169 ~~~gi~~l~~~l~~~i~ 185 (191)
T 3dz8_A 169 ENISVRQAFERLVDAIC 185 (191)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999877664
No 230
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.22 E-value=1.7e-06 Score=77.94 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=61.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEEe
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFHA 279 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~i 279 (457)
.+..+|++|+|+|+.++.+- ..+..++... ..+.|+++|+||+|+.+......+.+.+.. ......+.+
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRM--GVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKS 163 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTH--HHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEEC
T ss_pred HhhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEc
Confidence 46789999999999877421 2233333321 247899999999999865333333333321 123457889
Q ss_pred eccCCCChHHHHHHHHHHHHh
Q 012726 280 SINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~~ 300 (457)
||+++.|+++|++.|.+.+..
T Consensus 164 Sa~~~~gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 164 SSKTGDGLVEGMDWLVERLRE 184 (189)
T ss_dssp CTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHHHHHh
Confidence 999999999999999887754
No 231
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.21 E-value=2.3e-06 Score=78.51 Aligned_cols=95 Identities=14% Similarity=0.081 Sum_probs=61.6
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCe-eEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPS-LAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~-~~f~iSa~ 282 (457)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+||.+.. ....-...+...... ..|.+||+
T Consensus 96 ~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 175 (201)
T 2hup_A 96 QSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAK 175 (201)
T ss_dssp HHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTT
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCC
Confidence 345688999999999977643211 1122223322 2578999999999997531 111112223333444 67889999
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 012726 283 KSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~ 301 (457)
++.|+++|++.|.+.+...
T Consensus 176 ~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 176 DSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999988776543
No 232
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.21 E-value=8.2e-07 Score=96.09 Aligned_cols=122 Identities=16% Similarity=0.045 Sum_probs=74.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCc--------eec------CCCCceeEE-----EEEE-cC--CcEEEEecCCccc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVC--------KVA------PIPGETKVW-----QYIT-LT--KRIFLIDCPGVVY 363 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~--------~vs------~~pg~T~~~-----~~~~-~~--~~i~liDtPGi~~ 363 (457)
-.+|+++|++|+|||||+++|+..... .+. ...|.|... .+-. -+ ..+.|+||||...
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 458999999999999999999752110 011 123445321 1111 01 2578999999875
Q ss_pred CCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-CCHHHHHHHHHHHcCC
Q 012726 364 QNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW-VDENDFLLQLCKSTGK 427 (457)
Q Consensus 364 ~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~-~~~~efL~~la~r~g~ 427 (457)
.... ..+|.++..++..+............+...+.+.+...||+|-. .+.++.++.++...|.
T Consensus 86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~ 155 (600)
T 2ywe_A 86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGL 155 (600)
T ss_dssp GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCC
Confidence 4322 35688887666666554444444444556677899999999953 4567778888887765
No 233
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.21 E-value=1.2e-06 Score=79.95 Aligned_cols=91 Identities=13% Similarity=0.128 Sum_probs=61.0
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
...+..+|++|+|+|+.++.+. ..+..++.. . ..+.|+++|+||+||.+.. ........+...+....|.+||
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESF--NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASA 152 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBT
T ss_pred HHhhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEEC
Confidence 4467899999999999776321 223333332 1 1478999999999997532 2222233333333446788999
Q ss_pred cCCCChHHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~ 299 (457)
+++.|+++|++.|.+.+.
T Consensus 153 ~~~~gi~~l~~~l~~~i~ 170 (203)
T 1zbd_A 153 KDNINVKQTFERLVDVIC 170 (203)
T ss_dssp TTTBSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999988877654
No 234
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.21 E-value=3.1e-06 Score=87.12 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=72.1
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-CCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
..+.|+||..+ +.......+..+|++|+|+||.++. .....+....+... ..+|+|+|+||+|+
T Consensus 85 i~iiDtPGh~~--------------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~~~iivviNK~Dl 149 (410)
T 1kk1_A 85 VSFIDAPGHEA--------------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEECSSHHH--------------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGG
T ss_pred EEEEECCChHH--------------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CCCcEEEEEECccC
Confidence 44678888642 3345566778999999999998764 11111212222222 34689999999999
Q ss_pred CChhh----HHHHHHHHHhc--CCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 256 VPAWA----TKGWLRVLSKE--YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 256 vp~~~----~~~wl~~l~~~--~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
++... .+.+.+++... ....++++||.++.|+++|++.|.+.++.
T Consensus 150 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 150 VDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp SCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 97543 22333444432 23457889999999999999999887654
No 235
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.20 E-value=1.7e-06 Score=78.68 Aligned_cols=92 Identities=13% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcC-CeeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEY-PSLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~-p~~~f~iSa~ 282 (457)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.. ......+.+.+.+ ....+.+||+
T Consensus 93 ~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 93 SAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCC
Confidence 345678999999999987653222 1122333332 2368999999999997532 2222233344443 4567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDI 188 (192)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987655
No 236
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.20 E-value=1e-06 Score=91.58 Aligned_cols=107 Identities=17% Similarity=0.147 Sum_probs=62.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCC--CCce----------------------------ecCCCCceeEEEEEEc---C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTK--NVCK----------------------------VAPIPGETKVWQYITL---T 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~--~~~~----------------------------vs~~pg~T~~~~~~~~---~ 350 (457)
+..++|+++|.+|+|||||+|+|+.. .... ....+|+|.+.....+ +
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45689999999999999999999853 1100 0114677776543222 3
Q ss_pred CcEEEEecCCcccCC-----CCCccceEEEeccccCC-------cccHHHHHHHHHHhcCc-ceehhhcCCCC
Q 012726 351 KRIFLIDCPGVVYQN-----KDSETDIVLKGVVRVTN-------LEDAAEHIGEVLKRVKK-EHLKRAYKIKD 410 (457)
Q Consensus 351 ~~i~liDtPGi~~~~-----~~~e~dlvL~gvv~~~~-------l~~~~~~i~~~L~~~~~-~~l~~~y~i~~ 410 (457)
..+.|+||||..... ....+|.++..++..+. +.........++...+. +.+...||+|-
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 579999999976432 12467888886666554 22223333444555553 57788999984
No 237
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.20 E-value=2.1e-06 Score=78.59 Aligned_cols=90 Identities=17% Similarity=0.199 Sum_probs=59.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHH-------------HHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~w-------------l~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+++|+||+||.+....... ...+.....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (201)
T 2gco_A 93 SYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRIS 172 (201)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCC
Confidence 5688999999999976532111 1223334333457999999999999865322111 112222233
Q ss_pred e-eEEEeeccCCCChHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 274 ~-~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
. ..|.+||+++.|+++|++.|.+.+
T Consensus 173 ~~~~~~~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 173 AFGYLECSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3 578899999999999999887654
No 238
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.19 E-value=7.5e-06 Score=80.23 Aligned_cols=104 Identities=15% Similarity=0.103 Sum_probs=62.5
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC-C--cEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT-K--RIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~-~--~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|.+++... ....+++|.+.. .+.++ . .+.|+||||....... ..+|++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCC--CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCC--CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 4578999999999999999999986543 233344444322 22232 2 3559999997543221 456777
Q ss_pred EEeccccCCcc---cHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 374 LKGVVRVTNLE---DAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 374 L~gvv~~~~l~---~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
+..++ +.+.. +........+... +.+.+.+.+|+|-
T Consensus 231 i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 271 (332)
T 2wkq_A 231 LICFS-LVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDL 271 (332)
T ss_dssp EEEEE-TTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHH
T ss_pred EEEEe-CCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhc
Confidence 77443 33221 1111222333333 5678888899873
No 239
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.18 E-value=1.3e-06 Score=76.02 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=57.9
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHhc--CCCcEEEEeecCCCCChh-h-HHHHHHHHHhcCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHC--KHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~~--~~K~vIlVLNKiDLvp~~-~-~~~wl~~l~~~~p~~~f~iS 280 (457)
..+..+|++++|+|+.++.+. ..+..+ +.... .+.|+++|+||+|+.+.. . .....+.. ..+....+.+|
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~S 147 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-DQWNVNYVETS 147 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHH-HHHTCEEEECC
T ss_pred HHhhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHH-HHcCCeEEEeC
Confidence 356789999999999876421 122222 22222 378999999999997532 1 12222222 22334578889
Q ss_pred ccCCCChHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~ 298 (457)
|.++.|++++++.|.+..
T Consensus 148 a~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 148 AKTRANVDKVFFDLMREI 165 (168)
T ss_dssp TTTCTTHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999987655
No 240
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.18 E-value=1.6e-06 Score=76.63 Aligned_cols=90 Identities=19% Similarity=0.163 Sum_probs=57.6
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHH-hcCCCcEEEEeecCCCCChhh--HHHHHHHHHhcCCeeEEEeeccC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKE-HCKHKHMILLLNKCDLVPAWA--TKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~--~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
..+..+|++|+|+|+.++.+... ..+...+.. ...+.|+++|+||+|+.+... ........ .......+.+||.+
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 160 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA-KELNVMFIETSAKA 160 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHH-HHHTCEEEEEBTTT
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHH-HHcCCeEEEEeCCC
Confidence 35678999999999977543211 111222222 224789999999999975321 12222222 22334677889999
Q ss_pred CCChHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFA 298 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~ 298 (457)
+.|+++|++.|.+.+
T Consensus 161 ~~~i~~l~~~l~~~~ 175 (179)
T 2y8e_A 161 GYNVKQLFRRVAAAL 175 (179)
T ss_dssp TBSHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999887643
No 241
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.18 E-value=1.7e-06 Score=80.18 Aligned_cols=91 Identities=12% Similarity=0.101 Sum_probs=58.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhHHHH-------------HHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKGW-------------LRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~w-------------l~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+....... ...+.+...
T Consensus 102 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 181 (214)
T 2j1l_A 102 FYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVG 181 (214)
T ss_dssp ---CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcC
Confidence 56789999999999775421110 122233333457899999999999865322111 122333334
Q ss_pred e-eEEEeeccCCCChHHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 274 ~-~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
. ..+.+||+++.|+++|++.|.+.+.
T Consensus 182 ~~~~~~~SA~~g~gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 182 AVAYLECSARLHDNVHAVFQEAAEVAL 208 (214)
T ss_dssp CSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 3 6788999999999999999877664
No 242
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.18 E-value=1.3e-06 Score=79.02 Aligned_cols=90 Identities=17% Similarity=0.072 Sum_probs=58.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhH-------------HHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~-------------~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+++|+||+||.+.... ..-...+...+.
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 165 (194)
T 2atx_A 86 SYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcC
Confidence 56789999999999776321111 122333333457999999999999764211 111122222222
Q ss_pred e-eEEEeeccCCCChHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 274 ~-~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
. ..|.+||+++.|+++|++.|.+.+
T Consensus 166 ~~~~~~~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 166 ACCYVECSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHHHH
Confidence 2 567889999999999999887654
No 243
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=98.16 E-value=1.6e-06 Score=77.71 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=62.7
Q ss_pred HHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 204 ~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
...+..+..+|++|+|+|+.++.+.....+...+... ..+.|+|+|+||+||.+... . +........+.+||+
T Consensus 75 ~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~----~~~~~~~~~~~~SA~ 148 (172)
T 2gj8_A 75 ERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--G----MSEVNGHALIRLSAR 148 (172)
T ss_dssp HHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--E----EEEETTEEEEECCTT
T ss_pred HHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--h----hhhccCCceEEEeCC
Confidence 3455668899999999999988765544444444432 23689999999999854211 0 111233557789999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+++|++.|.+.+.
T Consensus 149 ~g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 149 TGEGVDVLRNHLKQSMG 165 (172)
T ss_dssp TCTTHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 99999999999877653
No 244
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.16 E-value=2.8e-06 Score=77.69 Aligned_cols=90 Identities=14% Similarity=0.111 Sum_probs=61.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+..+|++|+|+|+.++.+. ..+..++. .. ..+.|+++|+||+||.+.. ........+........|.+||.+
T Consensus 77 ~~~~~d~vilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (206)
T 2bcg_Y 77 YYRGSHGIIIVYDVTDQESF--NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD 154 (206)
T ss_dssp GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred hccCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 56889999999999876421 22333332 21 2468999999999997632 222223333334445677889999
Q ss_pred CCChHHHHHHHHHHHHh
Q 012726 284 SFGKGSLLSVLRQFARL 300 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~~ 300 (457)
+.|+++|++.|.+.+..
T Consensus 155 g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 155 STNVEDAFLTMARQIKE 171 (206)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999877654
No 245
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.16 E-value=1.4e-06 Score=76.30 Aligned_cols=91 Identities=15% Similarity=0.199 Sum_probs=59.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCC-CHHHHHHHHHh---cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTR-CHHLERHLKEH---CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~-~~~l~k~L~~~---~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++++|+|+.++.+.. ...+...+... .++.|+++|+||+|+.+... .......+...+....|.+||.
T Consensus 70 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 149 (172)
T 2erx_A 70 LSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAK 149 (172)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTT
T ss_pred HhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCC
Confidence 3566799999999998764321 12233333332 14789999999999975421 1222233333334567889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+..
T Consensus 150 ~~~gi~~l~~~l~~~~ 165 (172)
T 2erx_A 150 LNHNVKELFQELLNLE 165 (172)
T ss_dssp TTBSHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999987654
No 246
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.16 E-value=1.3e-06 Score=80.34 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=58.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhHHH-------------HHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKG-------------WLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~-------------wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+...... ....+.+.+.
T Consensus 98 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 4gzl_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcC
Confidence 56789999999999876432211 22333443345799999999999976432211 1122233333
Q ss_pred -eeEEEeeccCCCChHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
...|.+||+++.|+++|++.|.+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~ 201 (204)
T 4gzl_A 178 AVKYLECSALTQRGLKTVFDEAIR 201 (204)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred CcEEEEeeCCCCCCHHHHHHHHHH
Confidence 34788999999999999988865
No 247
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.16 E-value=1.7e-06 Score=77.00 Aligned_cols=89 Identities=11% Similarity=0.048 Sum_probs=59.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHhc--CCCcEEEEeecCCCCChh-h-HHHHHHHHHhcCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHC--KHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~~--~~K~vIlVLNKiDLvp~~-~-~~~wl~~l~~~~p~~~f~iS 280 (457)
..+..+|++++|+|+.++... ..+..+ +.... .+.|+++|+||+|+.+.. . .....+ +.+.+....+.+|
T Consensus 85 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~S 161 (187)
T 2a9k_A 85 NYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKN-RAEQWNVNYVETS 161 (187)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHH-HHHHTTCEEEECC
T ss_pred HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHH-HHHHcCCeEEEeC
Confidence 356789999999999865421 122222 22222 378999999999997532 1 122222 3333445678899
Q ss_pred ccCCCChHHHHHHHHHHHH
Q 012726 281 INKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~ 299 (457)
|+++.|+++|++.|.+.+.
T Consensus 162 a~~~~gi~~l~~~l~~~i~ 180 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIR 180 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
Confidence 9999999999999877664
No 248
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.15 E-value=4.8e-06 Score=78.07 Aligned_cols=122 Identities=16% Similarity=0.027 Sum_probs=65.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCC--CceeEEEEEEcCC---cEEEEecCCcccC------CCCCccceE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIP--GETKVWQYITLTK---RIFLIDCPGVVYQ------NKDSETDIV 373 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~p--g~T~~~~~~~~~~---~i~liDtPGi~~~------~~~~e~dlv 373 (457)
..++|++||.||||||||+|.+++....-+...+ |.+.....+.++. .+.++||+|.... .....++.+
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ 115 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 115 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEE
Confidence 4689999999999999999999975443233333 3222222333333 4578999996431 111233444
Q ss_pred EE--eccccCCcccHHHHHHHHHHhc----CcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 374 LK--GVVRVTNLEDAAEHIGEVLKRV----KKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 374 L~--gvv~~~~l~~~~~~i~~~L~~~----~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+. .+...+.+....... ..+.+. +.+.+.+.||+|-.. -..+-...+|...|.
T Consensus 116 ilVydvt~~~sf~~~~~~~-~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~ 177 (211)
T 2g3y_A 116 LIVYSITDRASFEKASELR-IQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDC 177 (211)
T ss_dssp EEEEETTCHHHHHHHHHHH-HHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred EEEEECCCHHHHHHHHHHH-HHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCC
Confidence 33 222222222222222 223332 457888999998421 112233456666663
No 249
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.15 E-value=1.7e-06 Score=77.29 Aligned_cols=95 Identities=12% Similarity=-0.059 Sum_probs=61.4
Q ss_pred HHHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 206 LYKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 206 l~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
....+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+... ...-...+........+.+||+
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 155 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSAL 155 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCC
Confidence 3456789999999999987543211 1122222221 35789999999999964321 1111222333445667888999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|++++++.|.+.+..
T Consensus 156 ~~~gi~~l~~~l~~~~~~ 173 (186)
T 2bme_A 156 TGENVEEAFVQCARKILN 173 (186)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999988776543
No 250
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.14 E-value=2.2e-06 Score=77.30 Aligned_cols=91 Identities=19% Similarity=0.166 Sum_probs=58.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.. ......+.+...+....+.+||++
T Consensus 89 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 1z06_A 89 HYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKN 168 (189)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSS
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCc
Confidence 45678999999999987543211 1122222222 3578999999999996532 223334444444555678889999
Q ss_pred C---CChHHHHHHHHHHH
Q 012726 284 S---FGKGSLLSVLRQFA 298 (457)
Q Consensus 284 ~---~Gi~~Li~~L~~~~ 298 (457)
+ .|+.++++.|.+.+
T Consensus 169 ~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 169 PNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp GGGGSCHHHHHHHHC---
T ss_pred CCcccCHHHHHHHHHHHH
Confidence 9 89998888876543
No 251
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.14 E-value=4.5e-06 Score=74.91 Aligned_cols=90 Identities=11% Similarity=0.060 Sum_probs=59.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH--hcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE--HCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~--~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
...+..+|++|+|+|+.++.+. ..+..++.. ...+.|+++|+||+|+..... .....+++ .......+.+||++
T Consensus 111 ~~~~~~~d~~i~v~D~~~~~s~--~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~ 187 (208)
T 3clv_A 111 PLYYRGATCAIVVFDISNSNTL--DRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYA-QDNNLLFIQTSAKT 187 (208)
T ss_dssp HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSCHHHHHHHH-HHTTCEEEEECTTT
T ss_pred HHHhcCCCEEEEEEECCCHHHH--HHHHHHHHHHHhhCCCcEEEEEECCCcccccCCHHHHHHHH-HHcCCcEEEEecCC
Confidence 3457899999999999876432 223333332 123589999999999432222 22333333 33455778899999
Q ss_pred CCChHHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFAR 299 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~ 299 (457)
+.|+++|++.|.+.+.
T Consensus 188 ~~~i~~l~~~l~~~~~ 203 (208)
T 3clv_A 188 GTNIKNIFYMLAEEIY 203 (208)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999877654
No 252
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.14 E-value=4.8e-06 Score=73.68 Aligned_cols=89 Identities=19% Similarity=0.198 Sum_probs=59.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhc------CC--eeEEEee
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKE------YP--SLAFHAS 280 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~------~p--~~~f~iS 280 (457)
.+..+|++|+|+|+.++...........+. ..+.|+++|+||+|+.+.. .......+... +. ...+.+|
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~--~~~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAK--AANVPIIVAINKMDKPEAN-PDRVMQELMEYNLVPEEWGGDTIFCKLS 151 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHG--GGSCCEEEEEETTTSSCSC-HHHHHHHHTTTTCCBTTTTSSEEEEECC
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHH--hCCCCEEEEEECccCCcCC-HHHHHHHHHhcCcChhHcCCcccEEEEe
Confidence 467899999999998765332222222222 2478999999999998632 12222333221 11 4678899
Q ss_pred ccCCCChHHHHHHHHHHHHh
Q 012726 281 INKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~~ 300 (457)
|+++.|+++|++.|.+.+..
T Consensus 152 a~~~~gv~~l~~~l~~~~~~ 171 (178)
T 2lkc_A 152 AKTKEGLDHLLEMILLVSEM 171 (178)
T ss_dssp SSSSHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHhhhh
Confidence 99999999999998876653
No 253
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.14 E-value=1.9e-06 Score=76.28 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=60.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHH---HHhcCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeeccCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL---KEHCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L---~~~~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
.+..+|++|+|+|+.++.+. ..+..++ ....++.|+|+|+||+|+.+.... ..-...+........+.+||.++
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 155 (181)
T 3tw8_B 78 YYRGTHGVIVVYDVTSAESF--VNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKEN 155 (181)
T ss_dssp GGTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred HhccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 56889999999999875321 2223333 333457899999999998754311 11122222333345678899999
Q ss_pred CChHHHHHHHHHHHHh
Q 012726 285 FGKGSLLSVLRQFARL 300 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~ 300 (457)
.|+++|++.|.+.+..
T Consensus 156 ~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 156 VNVEEMFNCITELVLR 171 (181)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999998876653
No 254
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.14 E-value=2.2e-06 Score=77.30 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=60.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHh----cCCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSK----EYPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~----~~p~~~f~ 278 (457)
..+..+|++++|+|+.++.+. ..+..++... ..+.|+++|+||+|+.+........+.+.. ......+.
T Consensus 79 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (181)
T 1fzq_A 79 SYFENTDILIYVIDSADRKRF--EETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQS 156 (181)
T ss_dssp HHHTTCSEEEEEEETTCGGGH--HHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred HHhCCCCEEEEEEECcCHHHH--HHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEE
Confidence 456889999999999876421 2233333321 247899999999999765333333333321 12355788
Q ss_pred eeccCCCChHHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+||+++.|++++++.|.+.+
T Consensus 157 ~Sa~~g~gi~~l~~~l~~~~ 176 (181)
T 1fzq_A 157 CSALTGEGVQDGMNWVCKNV 176 (181)
T ss_dssp CCTTTCTTHHHHHHHHHHTC
T ss_pred ccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999887644
No 255
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.13 E-value=4.6e-06 Score=76.97 Aligned_cols=92 Identities=11% Similarity=0.023 Sum_probs=62.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH-HHHHHHHHh-cCCCcEEEEeecCCCCCh-hhHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH-HLERHLKEH-CKHKHMILLLNKCDLVPA-WATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~-~l~k~L~~~-~~~K~vIlVLNKiDLvp~-~~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
.+..+|++|+|+|+.++.+.... .+...+... ..+.|+++|+||+|+.+. .........+........|.+||+++.
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (218)
T 4djt_A 81 YYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAH 160 (218)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTB
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCC
Confidence 46779999999999876432221 122222221 235899999999999865 333444445555555678889999999
Q ss_pred ChHHHHHHHHHHHHh
Q 012726 286 GKGSLLSVLRQFARL 300 (457)
Q Consensus 286 Gi~~Li~~L~~~~~~ 300 (457)
|++++++.|.+.+..
T Consensus 161 gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 161 NFGLPFLHLARIFTG 175 (218)
T ss_dssp TTTHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999887754
No 256
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.13 E-value=2e-06 Score=78.24 Aligned_cols=92 Identities=12% Similarity=0.139 Sum_probs=60.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChh-------------hHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~-------------~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+++|+||+||.+.. ........+...+.
T Consensus 88 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 167 (201)
T 2q3h_A 88 CYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167 (201)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcC
Confidence 56789999999999776432111 1222333334589999999999997531 11112222333323
Q ss_pred -eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
...|.+||+++.|+++|++.|.+.+..
T Consensus 168 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 168 AASYIECSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence 356888999999999999998776644
No 257
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.13 E-value=1.6e-06 Score=75.85 Aligned_cols=89 Identities=18% Similarity=0.137 Sum_probs=60.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh-cCCCcEEEEeecCCCCCh----hhHHHHHHHHHhcCCeeEEE
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPA----WATKGWLRVLSKEYPSLAFH 278 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~-~~~K~vIlVLNKiDLvp~----~~~~~wl~~l~~~~p~~~f~ 278 (457)
...+..+|++++|+|+.++.+. ..+..++. .. .++.|+++|+||+|+.+. .........+........+.
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~ 147 (170)
T 1ek0_A 70 PXYYRNAQAALVVYDVTKPQSF--IKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFE 147 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEE
T ss_pred hhhhccCcEEEEEEecCChHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEE
Confidence 3456889999999999876322 22333332 21 247899999999999753 22233334444444456788
Q ss_pred eeccCCCChHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~ 297 (457)
+||+++.|+++|++.|.+.
T Consensus 148 ~Sa~~~~gi~~l~~~l~~~ 166 (170)
T 1ek0_A 148 TSAKTGENVNDVFLGIGEK 166 (170)
T ss_dssp CCTTTCTTHHHHHHHHHTT
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999999999888653
No 258
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.13 E-value=2.8e-06 Score=77.10 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=60.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+. ..+..++. .. ..+.|+++|+||+|+.+.. ........+.+.....++.+||+
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~--~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSF--YTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAK 168 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTT
T ss_pred HhhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 356789999999999876421 22333333 22 2378999999999997522 11222333334445667889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+.+
T Consensus 169 ~~~gi~~l~~~l~~~i 184 (192)
T 2fg5_A 169 NAINIEELFQGISRQI 184 (192)
T ss_dssp TTBSHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHH
Confidence 9999999999987654
No 259
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.13 E-value=8e-06 Score=82.46 Aligned_cols=90 Identities=13% Similarity=0.119 Sum_probs=61.7
Q ss_pred hhccCEEEEEeeCCCCCCCCCHH---HHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCC
Q 012726 210 IDSSDVVVQVLDARDPQGTRCHH---LERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFG 286 (457)
Q Consensus 210 I~~sDvIL~VvDardp~~s~~~~---l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~G 286 (457)
...+|.+|+|+|+.++.+..... +...+.....++|+|+|+||+|+.+........+.+.. ....++.+||.+|.|
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~-~~~~~~~iSA~~g~g 322 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKE-KGLNPIKISALKGTG 322 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHH-TTCCCEECBTTTTBT
T ss_pred HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHh-cCCCeEEEeCCCCcC
Confidence 35699999999987654322222 22333332237999999999999887554444444433 234467789999999
Q ss_pred hHHHHHHHHHHHHh
Q 012726 287 KGSLLSVLRQFARL 300 (457)
Q Consensus 287 i~~Li~~L~~~~~~ 300 (457)
+++|.+.|.+.+..
T Consensus 323 i~~l~~~i~~~l~~ 336 (357)
T 2e87_A 323 IDLVKEEIIKTLRP 336 (357)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877643
No 260
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.13 E-value=2.5e-06 Score=74.55 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=59.1
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---H-hcCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~-~~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+. ..+..++. . ..++.|+++|+||+|+.+.... ......+........+.+||+
T Consensus 74 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 151 (170)
T 1r2q_A 74 MYYRGAQAAIVVYDITNEESF--ARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAK 151 (170)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred HhccCCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 456889999999999876421 22333332 2 1347889999999999653211 112223333455667889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+.+
T Consensus 152 ~g~gi~~l~~~i~~~~ 167 (170)
T 1r2q_A 152 TSMNVNEIFMAIAKKL 167 (170)
T ss_dssp TCTTHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987643
No 261
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.13 E-value=4.1e-06 Score=74.13 Aligned_cols=92 Identities=15% Similarity=0.113 Sum_probs=59.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhc-----CCCcEEEEeecCCCCChh--hHHHHHHHHHh-cCCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHC-----KHKHMILLLNKCDLVPAW--ATKGWLRVLSK-EYPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~-----~~K~vIlVLNKiDLvp~~--~~~~wl~~l~~-~~p~~~f~ 278 (457)
..+..+|++|+|+|+.++.+... ..+...+.... .+.|+++|+||+|+.+.. ........+.. ......+.
T Consensus 77 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~ 156 (182)
T 1ky3_A 77 AFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL 156 (182)
T ss_dssp CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEE
T ss_pred HHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEE
Confidence 45688999999999977643211 11112222211 578999999999996432 11222233333 34456778
Q ss_pred eeccCCCChHHHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+||+++.|+++|++.|.+.+.
T Consensus 157 ~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 157 TSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp EBTTTTBSHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHH
Confidence 899999999999999877653
No 262
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.13 E-value=5.3e-06 Score=72.33 Aligned_cols=91 Identities=15% Similarity=0.151 Sum_probs=59.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcC-CeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEY-PSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~-p~~~f~iSa~ 282 (457)
..+..+|++++|+|+.++.+... ..+.+.+... ..+.|+++|+||+|+.+... .......+.+.+ ....+.+||+
T Consensus 70 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 70 LYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC
Confidence 34567999999999987642211 1122223221 24789999999999975321 122233333444 4667889999
Q ss_pred CCCChHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~ 298 (457)
++.|+++|++.|.+.+
T Consensus 150 ~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQI 165 (167)
T ss_dssp TTBSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999987654
No 263
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.12 E-value=4.2e-06 Score=74.71 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=62.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHH--hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKE--HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~--~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++++|+|+.++.+. ..+..+ +.. ...+.|+++|+||+|+.+..........+...+....+.+||.
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSF--EDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred HHHhcCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 356679999999999765321 122222 222 1247899999999999865444444444444444567788999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|+++|++.|.+.+..
T Consensus 149 ~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998776653
No 264
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.12 E-value=2.1e-06 Score=79.03 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=60.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHH-------------HHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLR-------------VLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~-------------~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+++|+||+||.+......++. .+.....
T Consensus 93 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (207)
T 2fv8_A 93 SYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQ 172 (207)
T ss_dssp GCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcC
Confidence 5678999999999976532111 122333443345799999999999976533222221 1222222
Q ss_pred e-eEEEeeccCCCChHHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 274 ~-~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
. ..+.+||+++.|+++|++.|.+.+.
T Consensus 173 ~~~~~~~SA~~g~gi~el~~~l~~~i~ 199 (207)
T 2fv8_A 173 AYDYLECSAKTKEGVREVFETATRAAL 199 (207)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 2 5778899999999999999987653
No 265
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=98.12 E-value=5.1e-06 Score=87.70 Aligned_cols=88 Identities=22% Similarity=0.254 Sum_probs=61.5
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+..+|+||+|+|+.++.+..+..+.+.+ .++|+|+|+||+||.+......+.+++. ....++.+||+++
T Consensus 316 ~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~~--~~~~~i~iSAktg 389 (482)
T 1xzp_A 316 RTLQEIEKADIVLFVLDASSPLDEEDRKILERI----KNKRYLVVINKVDVVEKINEEEIKNKLG--TDRHMVKISALKG 389 (482)
T ss_dssp HHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHHT--CSTTEEEEEGGGT
T ss_pred HHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh----cCCCEEEEEECcccccccCHHHHHHHhc--CCCcEEEEECCCC
Confidence 345678899999999999888654333343333 3789999999999975422222222222 2234677899999
Q ss_pred CChHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFA 298 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~ 298 (457)
.|+++|++.|.+.+
T Consensus 390 ~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 390 EGLEKLEESIYRET 403 (482)
T ss_dssp CCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999987653
No 266
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.12 E-value=7.9e-06 Score=85.09 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=62.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCC-------CCCHHHHHHHHHhcCCCc-EE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MI 247 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~-------s~~~~l~k~L~~~~~~K~-vI 247 (457)
+..+.|+||..+ +...+...+..+|++|+|+||.++.. .........+.. .+.| +|
T Consensus 96 ~~~iiDTPGh~~--------------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~--~~v~~iI 159 (439)
T 3j2k_7 96 HFTILDAPGHKS--------------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT--AGVKHLI 159 (439)
T ss_pred EEEEEECCChHH--------------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH--cCCCeEE
Confidence 456789998643 33445556788999999999988653 122222223332 2566 89
Q ss_pred EEeecCCCCCh----hhH----HHHHHHHHhc-C----CeeEEEeeccCCCChHHHHH
Q 012726 248 LLLNKCDLVPA----WAT----KGWLRVLSKE-Y----PSLAFHASINKSFGKGSLLS 292 (457)
Q Consensus 248 lVLNKiDLvp~----~~~----~~wl~~l~~~-~----p~~~f~iSa~~~~Gi~~Li~ 292 (457)
+|+||+|+.+. ... ....+++... + ...++++||.+|.|+.++.+
T Consensus 160 vviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 160 VLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 99999999642 111 1222222221 1 24578899999999998443
No 267
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.11 E-value=3.8e-06 Score=75.77 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=61.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.. ......+.+.+.+....|.+||+++
T Consensus 90 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 169 (189)
T 2gf9_A 90 AYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKEN 169 (189)
T ss_dssp GGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred HhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCC
Confidence 35688999999999977542211 1122223322 2478999999999997532 1122233333333456788999999
Q ss_pred CChHHHHHHHHHHHHh
Q 012726 285 FGKGSLLSVLRQFARL 300 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~~ 300 (457)
.|+++|++.|.+.+..
T Consensus 170 ~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 170 INVKQVFERLVDVICE 185 (189)
T ss_dssp BSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999877643
No 268
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.11 E-value=2e-06 Score=91.74 Aligned_cols=68 Identities=19% Similarity=0.268 Sum_probs=49.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+. ..+....+..+|.+|+|+|+.++.......+...+.. .+.|+|+|+||+|
T Consensus 82 ~~i~liDTPG~~df--------------~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~--~~iPiivviNK~D 145 (528)
T 3tr5_A 82 YLINLLDTPGHADF--------------TEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL--RHTPIMTFINKMD 145 (528)
T ss_dssp EEEEEECCCCSTTC--------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT--TTCCEEEEEECTT
T ss_pred EEEEEEECCCchhH--------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCEEEEEeCCC
Confidence 34557899997532 1245678899999999999988765544444554443 4789999999999
Q ss_pred CCCh
Q 012726 255 LVPA 258 (457)
Q Consensus 255 Lvp~ 258 (457)
+...
T Consensus 146 l~~~ 149 (528)
T 3tr5_A 146 RDTR 149 (528)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9643
No 269
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=98.11 E-value=2.7e-07 Score=89.29 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=69.1
Q ss_pred ccCCcCCcchHhhhhhhhhcc-cchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEK-GQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~-~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
...++|+||+....... .. .....+.+... ....+|+||+|+|+.++ .+...+..++.. .+.|+|+|+||+|
T Consensus 49 ~~~lvDtpG~~~~~~~~--~~~~~~e~i~~~~~-~~~~~d~vi~VvDas~~--~~~~~l~~~l~~--~~~pvilv~NK~D 121 (256)
T 3iby_A 49 LIEITDLPGVYSLVANA--EGISQDEQIAAQSV-IDLEYDCIINVIDACHL--ERHLYLTSQLFE--LGKPVVVALNMMD 121 (256)
T ss_dssp EEEEEECCCCSSCC--------CHHHHHHHHHH-HHSCCSEEEEEEEGGGH--HHHHHHHHHHTT--SCSCEEEEEECHH
T ss_pred EEEEEeCCCcccccccc--cCCCHHHHHHHHHH-hhCCCCEEEEEeeCCCc--hhHHHHHHHHHH--cCCCEEEEEEChh
Confidence 34578999975332110 00 00122222222 23789999999999763 122233344433 3789999999999
Q ss_pred CCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 255 LVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
+.+........+.+.+.....++++||.++.|+++|++.|.+.
T Consensus 122 l~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 122 IAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp HHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred cCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 9754322112233444445567889999999999999888643
No 270
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.11 E-value=5.2e-06 Score=72.84 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=60.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hhc--CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~--~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++++|+|+.++.+.. .+..++. ... .+.|+++|+||+|+.+.. ........+...+....+.+||+
T Consensus 72 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (169)
T 3q85_A 72 CLQTGDAFLIVFSVTDRRSFS--KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 149 (169)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred hhccCCEEEEEEECCChHHHH--HHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCc
Confidence 345689999999997753221 1222222 222 378999999999997432 22333344445555677889999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|++++++.|.+.+.
T Consensus 150 ~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 150 LHHNTRELFEGAVRQIR 166 (169)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 99999999999877654
No 271
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.10 E-value=3.9e-06 Score=76.43 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=60.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~ 278 (457)
..+..+|++|+|+|+.++.+ ...+..++... ..+.|+++|+||+|+.+......+.+.+... .....+.
T Consensus 92 ~~~~~~d~iilv~D~~~~~s--~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~ 169 (192)
T 2b6h_A 92 HYFQNTQGLIFVVDSNDRER--VQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQA 169 (192)
T ss_dssp HHHHTCCEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEE
T ss_pred HHhccCCEEEEEEECCCHHH--HHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEE
Confidence 35678999999999987642 12333333321 2478999999999997653334444443322 2345788
Q ss_pred eeccCCCChHHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+||+++.|+++|++.|.+.+
T Consensus 170 ~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHHT
T ss_pred CcCCCcCCHHHHHHHHHHHH
Confidence 99999999999999887654
No 272
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.10 E-value=5.7e-06 Score=84.01 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=32.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCC--------CCceeEEEEEEc--C---CcEEEEecCCccc
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPI--------PGETKVWQYITL--T---KRIFLIDCPGVVY 363 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~--------pg~T~~~~~~~~--~---~~i~liDtPGi~~ 363 (457)
...++|+++|.+|+|||||+|+|++......+.. |+++.....+.+ . ..+.++||||+..
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd 107 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGD 107 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccc
Confidence 3468899999999999999999988655433322 222222222211 1 2589999999943
No 273
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.10 E-value=3.5e-06 Score=86.75 Aligned_cols=109 Identities=16% Similarity=0.143 Sum_probs=65.0
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-CCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
..+.|+||..+ +.......+..+|++|+|+|+.++. .....+....+.. ...+|+|+|+||+|+
T Consensus 83 i~iiDtPGh~~--------------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 83 VSFVDSPGHET--------------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEECSSHHH--------------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTCCCEEEEEECTTS
T ss_pred EEEEECCCHHH--------------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCCCeEEEEEEccCC
Confidence 44678888542 2334555677899999999998764 1111111122222 234689999999999
Q ss_pred CChh----hHHHHHHHHHhc--CCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 256 VPAW----ATKGWLRVLSKE--YPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 256 vp~~----~~~~wl~~l~~~--~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
++.. ..+...+++... ....+|++||.++.|+++|++.|.+.++.
T Consensus 148 ~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 148 VDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp SCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 8643 223344444432 13457889999999999999999886653
No 274
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.10 E-value=1.6e-06 Score=96.02 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=76.8
Q ss_pred cccCCcCCcchHhhhhhhhhcccch-HHHHHHHHHhh-hccCEEEEEeeCCCCCCCCCH-HHHHHHHHhcCCCcEEEEee
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQS-KRIWGELYKVI-DSSDVVVQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLN 251 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~-kr~~~el~k~I-~~sDvIL~VvDardp~~s~~~-~l~k~L~~~~~~K~vIlVLN 251 (457)
.+.+++|+||+....... .+... ..+.+.+.+.+ ..+|+||+|+|+..+++..+. .+.+.+.. .++|+|+|+|
T Consensus 150 ~qL~LVDTPGi~~~~~~~--qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~--~g~pvIlVlN 225 (772)
T 3zvr_A 150 LNLTLVDLPGMTKVPVGD--QPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVIT 225 (772)
T ss_dssp CSEEEEECCCCCCCCSSC--CCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT--TCSSEEEEEE
T ss_pred CceEEEECCCcccCCCCC--CcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh--cCCCEEEEEe
Confidence 356688999997522100 00000 12222333444 688999999999988877665 46666654 3789999999
Q ss_pred cCCCCChhhHHHHHHHHHh-cC----C-eeEEEeeccCCCChHHHHHHHHH---HHHh
Q 012726 252 KCDLVPAWATKGWLRVLSK-EY----P-SLAFHASINKSFGKGSLLSVLRQ---FARL 300 (457)
Q Consensus 252 KiDLvp~~~~~~wl~~l~~-~~----p-~~~f~iSa~~~~Gi~~Li~~L~~---~~~~ 300 (457)
|+|++++.... ...+.. .+ + ..++++||.++.|+++|.+.|.+ +++.
T Consensus 226 KiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe 281 (772)
T 3zvr_A 226 KLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLS 281 (772)
T ss_dssp CTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHH
T ss_pred CcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccC
Confidence 99999764321 111221 11 2 34667899999999999999886 4553
No 275
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=98.10 E-value=7.8e-06 Score=74.46 Aligned_cols=89 Identities=13% Similarity=0.072 Sum_probs=60.6
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---hcCCCcEEEEeecCCCCChhh--------HHHHHHHHHh----cC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---HCKHKHMILLLNKCDLVPAWA--------TKGWLRVLSK----EY 272 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~~~~K~vIlVLNKiDLvp~~~--------~~~wl~~l~~----~~ 272 (457)
..+..+|++|+|+|+.++.......+..++.. ..++.|+++|.||+||++... .....+.+.. ..
T Consensus 91 ~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 91 MIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 35678999999999988632222344455543 245889999999999987431 1122333444 34
Q ss_pred CeeEEEeeccCCCChHHHHHHHHHH
Q 012726 273 PSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 273 p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
....+.+||++ .|+.++++.|.+.
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHH
T ss_pred CcceEEEEech-hhHHHHHHHHHHH
Confidence 56678899999 9999998887653
No 276
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.09 E-value=7.1e-06 Score=73.36 Aligned_cols=100 Identities=15% Similarity=0.057 Sum_probs=62.6
Q ss_pred HHHHHHHHHh-hhccCEEEEEeeCCCCCC-----------CCCHHHHHHHHHhcCCCcEEEEeecCCCCChh--hHHHHH
Q 012726 200 KRIWGELYKV-IDSSDVVVQVLDARDPQG-----------TRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWL 265 (457)
Q Consensus 200 kr~~~el~k~-I~~sDvIL~VvDardp~~-----------s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~--~~~~wl 265 (457)
..++...+.. .+.+++++.|+|+..... ..+..+.+.+.. .+.|+++|+||+|+.+.. ....+.
T Consensus 69 ~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~ 146 (190)
T 2cxx_A 69 KDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLA 146 (190)
T ss_dssp HHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh--cCCceEEEeehHhccCcHHHHHHHHH
Confidence 3344444444 778899999999753210 000112223322 479999999999998753 333444
Q ss_pred HHHHhcC---CeeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 266 RVLSKEY---PSLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 266 ~~l~~~~---p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+.+...+ ...++.+||+++.|++++++.|.+.+...
T Consensus 147 ~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 147 EKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 4333211 12468899999999999999998877543
No 277
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=98.09 E-value=2.9e-06 Score=85.77 Aligned_cols=116 Identities=18% Similarity=0.176 Sum_probs=72.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HH---HHHHHHHhc---CCCcEEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HH---LERHLKEHC---KHKHMIL 248 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~---l~k~L~~~~---~~K~vIl 248 (457)
..++.|+||+.....+ + +.+..+..+.++.+|++|+|+|+.++.+... .. +...|.... .++|+|+
T Consensus 207 ~~~l~DtPG~i~~a~~--~-----~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~il 279 (342)
T 1lnz_A 207 SFVMADLPGLIEGAHQ--G-----VGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQII 279 (342)
T ss_dssp EEEEEEHHHHHHHTTC--T-----TTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCB
T ss_pred eEEEecCCCCcccccc--c-----chhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEE
Confidence 3456788887542211 1 2244455667788999999999965321111 12 223333321 3789999
Q ss_pred EeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 249 LLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 249 VLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
|+||+|+.+... ...+.+.+... ..+|.+||.++.|+++|++.|.+.+..
T Consensus 280 V~NK~Dl~~~~e~~~~l~~~l~~~--~~v~~iSA~tg~gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 280 VANKMDMPEAAENLEAFKEKLTDD--YPVFPISAVTREGLRELLFEVANQLEN 330 (342)
T ss_dssp EEECTTSTTHHHHHHHHHHHCCSC--CCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred EEECccCCCCHHHHHHHHHHhhcC--CCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence 999999987532 22333222211 346778999999999999999887753
No 278
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.09 E-value=2.2e-06 Score=89.99 Aligned_cols=107 Identities=16% Similarity=0.132 Sum_probs=59.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC------------------------ceec------CCCCceeEEEE--EEc-C
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV------------------------CKVA------PIPGETKVWQY--ITL-T 350 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~------------------------~~vs------~~pg~T~~~~~--~~~-~ 350 (457)
+..++|+++|.+|+|||||+|+|+.... ..+. ...|.|.+..+ +.. +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4578999999999999999999974110 0011 12466765432 222 3
Q ss_pred CcEEEEecCCcccCCCC-----CccceEEEeccccCCcc-------cHHHHHHHHHHhcCcc-eehhhcCCCC
Q 012726 351 KRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVTNLE-------DAAEHIGEVLKRVKKE-HLKRAYKIKD 410 (457)
Q Consensus 351 ~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~~l~-------~~~~~i~~~L~~~~~~-~l~~~y~i~~ 410 (457)
..+.|+||||....... ..+|+++..++..+... ........++...+.+ .+...||+|-
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 47899999997543221 46788888666655431 1122233345556655 7888999995
No 279
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.09 E-value=2.7e-06 Score=83.49 Aligned_cols=121 Identities=12% Similarity=0.080 Sum_probs=76.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeC-CCCCCCCCH-HHHHHHHHhcCCCcEEEEeec
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDA-RDPQGTRCH-HLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDa-rdp~~s~~~-~l~k~L~~~~~~K~vIlVLNK 252 (457)
.+..++|+||+........ .......+...+..++..+|++++|+|+ ..++..... .+.+.+.. .++|+|+|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQ-PTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC----------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCC-chhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcC
Confidence 4567899999864211000 0111245667788899999999999997 445554443 56666543 37899999999
Q ss_pred CCCCChhhHHHHHHHHHhc-C----C-eeEEEeeccC---CCChHHHHHHHHHHHHh
Q 012726 253 CDLVPAWATKGWLRVLSKE-Y----P-SLAFHASINK---SFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLvp~~~~~~wl~~l~~~-~----p-~~~f~iSa~~---~~Gi~~Li~~L~~~~~~ 300 (457)
+|+++... .+.+.+... . + ..++..|+.+ +.|+.+|++.+.++++.
T Consensus 208 ~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGT--DAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSC--CCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcch--HHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99986543 122333321 1 1 1223346666 78999999999998875
No 280
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.09 E-value=1.9e-06 Score=78.64 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=58.4
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCCh-------hhHHHHHHHHHhcCCeeEE
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPA-------WATKGWLRVLSKEYPSLAF 277 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~-------~~~~~wl~~l~~~~p~~~f 277 (457)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+||.+. .........+...+....+
T Consensus 95 ~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 174 (199)
T 2p5s_A 95 KSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFC 174 (199)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEE
T ss_pred HHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEE
Confidence 345678999999999977643222 1122223321 236899999999999621 1122233333333345678
Q ss_pred EeeccCCCChHHHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.+||+++.|++++++.|.+.+
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i 195 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREV 195 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHH
Confidence 889999999999998887654
No 281
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.08 E-value=5.8e-06 Score=94.87 Aligned_cols=124 Identities=17% Similarity=0.085 Sum_probs=73.1
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCC---------c------eecCCCCceeEEEEEE---cCCcEEEEecCCcccCC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNV---------C------KVAPIPGETKVWQYIT---LTKRIFLIDCPGVVYQN 365 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~---------~------~vs~~pg~T~~~~~~~---~~~~i~liDtPGi~~~~ 365 (457)
+..++|+++|.+|+|||||+|+|++... . ......|+|.+...+. -+..+.|+||||.....
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 4568999999999999999999986310 0 1112456665432222 23579999999975421
Q ss_pred -----CCCccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCCCCHH------HHHHHHHHHcCC
Q 012726 366 -----KDSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDWVDEN------DFLLQLCKSTGK 427 (457)
Q Consensus 366 -----~~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~~~~~------efL~~la~r~g~ 427 (457)
....+|.++..++..+...........++...+.+ .+...||+|-..+.+ +-+..++...|+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 22467888886666555433333333455566666 578899999654332 123445566664
No 282
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.08 E-value=3.2e-06 Score=76.94 Aligned_cols=86 Identities=22% Similarity=0.200 Sum_probs=58.0
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-----hcCCCcEEEEeecCCCCChhhHHHHHHHHHh-----------cC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK-----------EY 272 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~-----------~~ 272 (457)
.+..+|++++|+|+.++.+- ..+..++.. ...+.|+++|+||+|+......+...+.+.. ..
T Consensus 87 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 87 YFPEVNGIVFLVDAADPERF--DEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp GCTTCCEEEEEEETTCGGGH--HHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSC
T ss_pred HHhcCCEEEEEEECCChHHH--HHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccc
Confidence 45789999999999876421 223333322 1257899999999999753223333333332 12
Q ss_pred CeeEEEeeccCCCChHHHHHHHHH
Q 012726 273 PSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 273 p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
....+.+||+++.|++++.+.|.+
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHh
Confidence 356788999999999999988753
No 283
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.08 E-value=3.5e-05 Score=70.23 Aligned_cols=121 Identities=12% Similarity=0.051 Sum_probs=66.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCcee-cCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKV-APIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~v-s~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
.++|+++|.+|||||||+|.|++...... .+..|++.....+.++. .+.++||||....... ..++.++..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 84 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV 84 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEE
Confidence 57899999999999999999998654222 23333332233344433 4678999996533211 345655553
Q ss_pred ccccCCc---ccHHHHHHHHHHh--cCcceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 377 VVRVTNL---EDAAEHIGEVLKR--VKKEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l---~~~~~~i~~~L~~--~~~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
+ +.... .+....+..+... ...+.+...+++|-.. -..+....++...+.
T Consensus 85 ~-d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~ 142 (199)
T 2f9l_A 85 Y-DIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNL 142 (199)
T ss_dssp E-ETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTC
T ss_pred E-ECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCC
Confidence 3 32221 1211222222222 2345677788887321 123345667777665
No 284
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.36 E-value=4.5e-07 Score=83.11 Aligned_cols=105 Identities=17% Similarity=0.104 Sum_probs=59.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcC---CcEEEEecCCcccCCCC-----CccceE
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLT---KRIFLIDCPGVVYQNKD-----SETDIV 373 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~---~~i~liDtPGi~~~~~~-----~e~dlv 373 (457)
...++|+++|.+|||||||+|+|++.... .....+|.+.. .+..+ -.+.|+||||....... ..+|.+
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFP--GEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 45789999999999999999999875432 12222222111 11111 24569999997533211 345666
Q ss_pred EEecccc--CCcccHHHHHHHHHHhc--CcceehhhcCCCC
Q 012726 374 LKGVVRV--TNLEDAAEHIGEVLKRV--KKEHLKRAYKIKD 410 (457)
Q Consensus 374 L~gvv~~--~~l~~~~~~i~~~L~~~--~~~~l~~~y~i~~ 410 (457)
+..++.. +.+.+........+... +.+.+.+.+++|-
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl 146 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 146 (204)
Confidence 6533322 12222221222333333 4577888899884
No 285
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.08 E-value=4.9e-06 Score=87.56 Aligned_cols=101 Identities=16% Similarity=0.043 Sum_probs=60.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCC----CCHHHHH---HHHHhcCCCcE
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT----RCHHLER---HLKEHCKHKHM 246 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s----~~~~l~k---~L~~~~~~K~v 246 (457)
..+..+.|+||..+ +...+...+..+|++|+|+|+.++... ......+ .+.. ...+|+
T Consensus 110 ~~~~~iiDTPG~~~--------------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~~~i 174 (483)
T 3p26_A 110 RANFTIVDAPGHRD--------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNL 174 (483)
T ss_dssp SCEEEEECCCCCGG--------------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTCCCE
T ss_pred CceEEEEECCCcHH--------------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCCCcE
Confidence 34455788888743 234455678899999999999886322 1122222 2222 223679
Q ss_pred EEEeecCCCCC--hhhHHH---H-HHHHHhc-C---CeeEEEeeccCCCChHH
Q 012726 247 ILLLNKCDLVP--AWATKG---W-LRVLSKE-Y---PSLAFHASINKSFGKGS 289 (457)
Q Consensus 247 IlVLNKiDLvp--~~~~~~---w-l~~l~~~-~---p~~~f~iSa~~~~Gi~~ 289 (457)
|+|+||+||++ ....+. . .+++... + ...++++||++|.|+.+
T Consensus 175 IvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 175 IIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred EEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 99999999986 222222 2 2222221 1 24578899999999873
No 286
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.08 E-value=3.8e-06 Score=74.39 Aligned_cols=92 Identities=15% Similarity=-0.014 Sum_probs=58.2
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh---cCCCc-EEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH---CKHKH-MILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~---~~~K~-vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.| +++|+||+|+.+.. ........+........+.+||
T Consensus 75 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (178)
T 2hxs_A 75 KYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSA 154 (178)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 35688999999999987643211 1122222221 12456 78999999996532 1122222333333345678899
Q ss_pred cCCCChHHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~ 299 (457)
+++.|++++++.|.+.+.
T Consensus 155 ~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 155 KTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp TTCTTHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999887653
No 287
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.35 E-value=4.7e-07 Score=82.96 Aligned_cols=88 Identities=17% Similarity=0.151 Sum_probs=56.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhHHH-------------HHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWATKG-------------WLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~-------------wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+++|+||+|+.+...... ....+.+...
T Consensus 98 ~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 177 (204)
T 3th5_A 98 SYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177 (204)
Confidence 56789999999999877543321 23333333233789999999999976431111 1111222222
Q ss_pred e-eEEEeeccCCCChHHHHHHHHH
Q 012726 274 S-LAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 274 ~-~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
. ..+.+||+++.|+++|++.|.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~ 201 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIR 201 (204)
Confidence 2 4577899999999999888764
No 288
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=98.07 E-value=3.4e-07 Score=89.25 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=70.5
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|+||+..... +...+.....+...+-....+|+||+|+|+.++ .....+...+.+. +.|+|+|+||+|+.
T Consensus 52 ~~liDtpG~~~~~~--~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~--~~~~~~~~~l~~~--~~p~ivv~NK~Dl~ 125 (274)
T 3i8s_A 52 VTLVDLPGTYSLTT--ISSQTSLDEQIACHYILSGDADLLINVVDASNL--ERNLYLTLQLLEL--GIPCIVALNMLDIA 125 (274)
T ss_dssp EEEEECCCCSCSCC------CCHHHHHHHHHHHHTCCSEEEEEEEGGGH--HHHHHHHHHHHHH--TCCEEEEEECHHHH
T ss_pred eEEEECcCCCcccc--ccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh--HHHHHHHHHHHhc--CCCEEEEEECccch
Confidence 44688999754321 001111122222334455899999999999763 1223344444443 79999999999997
Q ss_pred ChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 257 p~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+........+.+.+.+...++.+||.++.|+++|++.|.+.+
T Consensus 126 ~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~ 167 (274)
T 3i8s_A 126 EKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK 167 (274)
T ss_dssp HHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred hhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 543211112333333345677889999999999988886543
No 289
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.07 E-value=4e-06 Score=74.82 Aligned_cols=91 Identities=16% Similarity=0.183 Sum_probs=59.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHH--hcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc-C
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKE--HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN-K 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~--~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~-~ 283 (457)
.+..+|++++|+|+.++.+... ..+...+.. ...+.|+|+|+||+|+.+.. ........+...+....+.+||+ +
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP 165 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCC
Confidence 4677999999999987632211 111222222 13578999999999997522 22223333333334557788999 9
Q ss_pred CCChHHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFAR 299 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~ 299 (457)
+.|++++++.|.+.+.
T Consensus 166 ~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 166 PLNVDKTFHDLVRVIR 181 (183)
T ss_dssp CBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999887653
No 290
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.06 E-value=1.2e-05 Score=77.17 Aligned_cols=88 Identities=13% Similarity=0.061 Sum_probs=58.0
Q ss_pred hccCEEEEEeeCCCCCCCCCHHHHHHHHH-----hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 211 DSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 211 ~~sDvIL~VvDardp~~s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
.++|++|+|+|+.++.......+..++.. ...+.|+|+|+||+||.+........+..........+.+||+++.
T Consensus 161 ~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~ 240 (255)
T 3c5h_A 161 LLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNV 240 (255)
T ss_dssp EECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTB
T ss_pred ccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 37899999999988621112233333322 1257899999999999876544433333333234556788999999
Q ss_pred ChHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFA 298 (457)
Q Consensus 286 Gi~~Li~~L~~~~ 298 (457)
|+++|++.|.+.+
T Consensus 241 gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 NVDLAFSTLVQLI 253 (255)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999887654
No 291
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.06 E-value=9.7e-06 Score=71.60 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=61.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHH----HHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHL----KEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L----~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++++|+|+.++.+. ..+..++ ... ..+.|+++|+||+|+.+.. ........+........|.+||+
T Consensus 77 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 154 (181)
T 2fn4_A 77 YMRAGHGFLLVFAINDRQSF--NEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAK 154 (181)
T ss_dssp HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred HHhhCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCC
Confidence 45679999999999765321 1222222 221 2478999999999997532 21223334444445667889999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|+++|++.|.+.+..
T Consensus 155 ~~~gv~~l~~~l~~~~~~ 172 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRK 172 (181)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 292
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.05 E-value=1.4e-05 Score=85.68 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=89.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc---------------eecC------CCCcee---EEEEEEcCCcEEEEecCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC---------------KVAP------IPGETK---VWQYITLTKRIFLIDCPG 360 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~---------------~vs~------~pg~T~---~~~~~~~~~~i~liDtPG 360 (457)
+.-+|++||+..+|||||.-+|+-.... ++.+ --|.|. .....+-+..|.||||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 3467999999999999999999621100 1111 113221 122222345799999999
Q ss_pred cccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC-CCCHHHHHHHHHHHcCC
Q 012726 361 VVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD-WVDENDFLLQLCKSTGK 427 (457)
Q Consensus 361 i~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~-~~~~~efL~~la~r~g~ 427 (457)
.+....+ .-+|-++..|++++.+......+...+.+.+.+.+...||||. ..+.++.++.+-.+.|.
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~~~~~i~~~l~~ 182 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLDVMADIEQHLQI 182 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhHhhhhhhhhcCC
Confidence 9977654 2468888888889999888899999999999999999999994 56888999999888764
No 293
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.05 E-value=1.6e-06 Score=75.45 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=58.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
..+..+|.+++|+|+.++.+. ..+..+ +... ..+.|+++|+||+|+.+.. ........+...+....+.+||
T Consensus 70 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 147 (167)
T 1kao_A 70 LYIKNGQGFILVYSLVNQQSF--QDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSA 147 (167)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECT
T ss_pred HHhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecC
Confidence 356788999999999875421 122222 2221 2478999999999997532 1122222333333345778899
Q ss_pred cCCCChHHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~ 299 (457)
+++.|+++|++.|.+.+.
T Consensus 148 ~~~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 148 KSKTMVDELFAEIVRQMN 165 (167)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999877653
No 294
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=98.05 E-value=6.3e-06 Score=72.06 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=58.5
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++++|+|+.++.+. ..+..++.. . ..+.|+++|+||+||.+.. ........+........+.+||+
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 146 (166)
T 3q72_A 69 CMAMGDAYVIVYSVTDKGSF--EKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 146 (166)
T ss_dssp ----CCEEEEEEETTCHHHH--HHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGG
T ss_pred hhhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccC
Confidence 45789999999999876421 223333322 1 2478999999999997543 22333344444555677889999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+++|++.|.+.+.
T Consensus 147 ~~~gi~~l~~~l~~~~~ 163 (166)
T 3q72_A 147 LHHNVQALFEGVVRQIR 163 (166)
T ss_dssp GTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999887654
No 295
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=98.04 E-value=1.4e-06 Score=84.28 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=69.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||......... ...+.+... ....+|+|++|+|+.++. +...+...+.. .+.|+++|+||+|+
T Consensus 53 ~~~l~DtpG~~~~~~~~~-----~e~v~~~~~-~~~~~d~ii~V~D~t~~~--~~~~~~~~l~~--~~~pvilv~NK~Dl 122 (258)
T 3a1s_A 53 TINLIDLPGTYSLGYSSI-----DEKIARDYL-LKGDADLVILVADSVNPE--QSLYLLLEILE--MEKKVILAMTAIDE 122 (258)
T ss_dssp EEEEEECCCCSSCCSSSH-----HHHHHHHHH-HHSCCSEEEEEEETTSCH--HHHHHHHHHHT--TTCCEEEEEECHHH
T ss_pred EEEEEECCCcCccCCCCH-----HHHHHHHHH-hhcCCCEEEEEeCCCchh--hHHHHHHHHHh--cCCCEEEEEECcCC
Confidence 345788998753321110 022222222 126899999999997642 12223333333 47999999999998
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
..........+.+.+.+...++.+||+++.|+++|++.|.+.+.
T Consensus 123 ~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 123 AKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp HHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 64322111123333333456778899999999999999987664
No 296
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.04 E-value=5.3e-06 Score=74.04 Aligned_cols=91 Identities=14% Similarity=0.185 Sum_probs=55.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+. ..+..++.. . .++.|+++|+||+||.+.. ....-...+........|.+||+
T Consensus 76 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 153 (183)
T 2fu5_C 76 AYYRGAMGIMLVYDITNEKSF--DNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAK 153 (183)
T ss_dssp TTTTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC-
T ss_pred HHHhcCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCC
Confidence 356789999999999876421 233333332 1 2468999999999997532 11112222323334567888999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|+++|++.|.+.+..
T Consensus 154 ~~~~i~~l~~~l~~~i~~ 171 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKA 171 (183)
T ss_dssp --CCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998776643
No 297
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.04 E-value=4.1e-06 Score=76.06 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=58.7
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHhc--CCCcEEEEeecCCCCChh-h-HHHHHHHHHhcCCeeEEEee
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEHC--KHKHMILLLNKCDLVPAW-A-TKGWLRVLSKEYPSLAFHAS 280 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~~--~~K~vIlVLNKiDLvp~~-~-~~~wl~~l~~~~p~~~f~iS 280 (457)
..+..+|++++|+|+.++.+. ..+..+ +.... .+.|+++|+||+|+.+.. . .....+.. ..+....|.+|
T Consensus 81 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~S 157 (206)
T 2bov_A 81 NYFRSGEGFLCVFSITEMESF--AATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA-EQWNVNYVETS 157 (206)
T ss_dssp HHHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHH-HHHTCEEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHH-HHhCCeEEEEe
Confidence 356789999999999765321 122222 22222 378999999999997532 1 12222222 22334578889
Q ss_pred ccCCCChHHHHHHHHHHHHh
Q 012726 281 INKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 281 a~~~~Gi~~Li~~L~~~~~~ 300 (457)
|.++.|+++|++.|.+.+..
T Consensus 158 a~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 99999999999988766543
No 298
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=98.03 E-value=2.9e-06 Score=89.05 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=63.9
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.||+|+.+.. ..+- ...++..+..+..+|+||+|+|+.+++......+.+.+ ..+|+|+|+||+|+
T Consensus 273 ~v~liDT~G~~~~~-~~ve-----~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l----~~~piivV~NK~Dl 342 (462)
T 3geh_A 273 PVQVLDTAGIRETS-DQVE-----KIGVERSRQAANTADLVLLTIDAATGWTTGDQEIYEQV----KHRPLILVMNKIDL 342 (462)
T ss_dssp EEEECC--------------------------CCCCSCSEEEEEEETTTCSCHHHHHHHHHH----TTSCEEEEEECTTS
T ss_pred EEEEEECCccccch-hHHH-----HHHHHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhc----cCCcEEEEEECCCC
Confidence 34568899985321 1000 11234456678899999999999987764443333333 35899999999999
Q ss_pred CChhhHHHHHHHHHhc-CCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKE-YPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~-~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.+..... .+... ....++.+||+++.|+++|.+.|.+.+
T Consensus 343 ~~~~~~~----~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~ 382 (462)
T 3geh_A 343 VEKQLIT----SLEYPENITQIVHTAAAQKQGIDSLETAILEIV 382 (462)
T ss_dssp SCGGGST----TCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CcchhhH----HHHHhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 8764322 11111 123467889999999999999998765
No 299
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=98.03 E-value=1.6e-05 Score=74.78 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=66.2
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEE
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLK 375 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~ 375 (457)
+.++|++||-+||||||||+.++.... ....+..|.......+..+. .+.|+||+|--....- ..++.++.
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 357999999999999999999986443 22223333222222333332 5689999996432211 34555554
Q ss_pred ecccc---CCcccHHHHHHHHHHhcC--cceehhhcCCCCCC---CHHHHHHHHHHHcCC
Q 012726 376 GVVRV---TNLEDAAEHIGEVLKRVK--KEHLKRAYKIKDWV---DENDFLLQLCKSTGK 427 (457)
Q Consensus 376 gvv~~---~~l~~~~~~i~~~L~~~~--~~~l~~~y~i~~~~---~~~efL~~la~r~g~ 427 (457)
|.++ +.+......+..+..... .+.+++-++.|-.+ -..+-.+.+|+..|.
T Consensus 92 -v~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~ 150 (216)
T 4dkx_A 92 -VYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNV 150 (216)
T ss_dssp -EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTC
T ss_pred -EeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCC
Confidence 2233 233444445555544433 35677888888422 123345667777775
No 300
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.02 E-value=6.9e-06 Score=75.16 Aligned_cols=89 Identities=15% Similarity=0.025 Sum_probs=59.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHH---H-hcCCCcEEEEeecCCCCChhhH--HHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAWAT--KGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~-~~~~K~vIlVLNKiDLvp~~~~--~~wl~~l~~~~p~~~f~iSa 281 (457)
..+..+|++|+|+|+.++.+. ..+..++. . ...+.|+++|+||+|+.+.... .... .+........+.+||
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~~~~~~~~~~SA 169 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETY--NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS-RFAQENELMFLETSA 169 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHH-HHHHHTTCEEEEECT
T ss_pred HHhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHH-HHHHHcCCEEEEEeC
Confidence 456789999999999876432 12233332 2 1247899999999999643211 2222 233334556788899
Q ss_pred cCCCChHHHHHHHHHHHH
Q 012726 282 NKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~ 299 (457)
+++.|++++++.|.+.+.
T Consensus 170 ~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 170 LTGENVEEAFLKCARTIL 187 (200)
T ss_dssp TTCTTHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999998876654
No 301
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=98.02 E-value=6.9e-06 Score=88.87 Aligned_cols=110 Identities=15% Similarity=0.095 Sum_probs=74.5
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+.. .++...+..+|.+|+|+|+.++............. ..+.|+|+|+||+|
T Consensus 73 ~~inliDTPGh~dF~--------------~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~--~~~ipiIvviNKiD 136 (600)
T 2ywe_A 73 YKLHLIDTPGHVDFS--------------YEVSRALAACEGALLLIDASQGIEAQTVANFWKAV--EQDLVIIPVINKID 136 (600)
T ss_dssp EEEEEECCCCSGGGH--------------HHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHH--HTTCEEEEEEECTT
T ss_pred EEEEEEECCCcHhHH--------------HHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHH--HCCCCEEEEEeccC
Confidence 344578999875422 24455678999999999998875432222222222 24789999999999
Q ss_pred CCChhhHHHHHHHHHhcCC---eeEEEeeccCCCChHHHHHHHHHHHHhh
Q 012726 255 LVPAWATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~~~p---~~~f~iSa~~~~Gi~~Li~~L~~~~~~~ 301 (457)
+.... .....+.+...+. ..++.+||+++.|+++|++.|.+.++..
T Consensus 137 l~~a~-~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 137 LPSAD-VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp STTCC-HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred ccccC-HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 97543 2333344444332 3478899999999999999998887643
No 302
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.01 E-value=8.5e-06 Score=73.67 Aligned_cols=92 Identities=11% Similarity=0.053 Sum_probs=59.4
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKS 284 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~ 284 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.+.. ........+........+.+||+++
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 168 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 35678999999999977542211 1122222221 2478999999999996532 1122223333333456778899999
Q ss_pred CChHHHHHHHHHHHH
Q 012726 285 FGKGSLLSVLRQFAR 299 (457)
Q Consensus 285 ~Gi~~Li~~L~~~~~ 299 (457)
.|++++++.|.+.+.
T Consensus 169 ~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 169 CNVEEAFINTAKEIY 183 (191)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999988876654
No 303
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.01 E-value=6.6e-06 Score=72.42 Aligned_cols=91 Identities=18% Similarity=0.155 Sum_probs=58.6
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHH---HHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeec
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERH---LKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASI 281 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~---L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa 281 (457)
..+..+|++++|+|+.++.+. ..+..+ +... ..+.|+++|+||+|+.+.. ........+...+....+.+||
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (175)
T 2nzj_A 73 SCLQGGSAYVIVYSIADRGSF--ESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSA 150 (175)
T ss_dssp HTTTSCSEEEEEEETTCHHHH--HHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBT
T ss_pred hhcccCCEEEEEEECCCHHHH--HHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEec
Confidence 356789999999999765421 122233 2221 2378999999999997532 1112222233333456788999
Q ss_pred cCCCChHHHHHHHHHHHHh
Q 012726 282 NKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 282 ~~~~Gi~~Li~~L~~~~~~ 300 (457)
+++.|+++|++.|.+.+..
T Consensus 151 ~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 151 TLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999876654
No 304
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.00 E-value=6.9e-06 Score=75.25 Aligned_cols=86 Identities=19% Similarity=0.195 Sum_probs=57.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-----hcCCCcEEEEeecCCCCChhhHHHHHHHHHh-------------
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSK------------- 270 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~------------- 270 (457)
.+..+|++++|+|+.++.+ ...+..++.. ...+.|+++|+||+|+......+...+.+..
T Consensus 89 ~~~~~d~~i~v~D~~~~~s--~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
T 1f6b_A 89 YLPAINGIVFLVDCADHER--LLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLK 166 (198)
T ss_dssp GGGGCSEEEEEEETTCGGG--HHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred HHhcCCEEEEEEECCCHHH--HHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccc
Confidence 4678999999999987642 1223333332 1247899999999999752222223333321
Q ss_pred ---cCCeeEEEeeccCCCChHHHHHHHHH
Q 012726 271 ---EYPSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 271 ---~~p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
......+.+||+++.|++++++.|.+
T Consensus 167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~ 195 (198)
T 1f6b_A 167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQ 195 (198)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred cccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence 12356788999999999999988764
No 305
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.00 E-value=1.3e-06 Score=77.39 Aligned_cols=79 Identities=24% Similarity=0.280 Sum_probs=52.7
Q ss_pred hccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChh----hHHHHHHHHHhcCCeeEEEeeccCCCC
Q 012726 211 DSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW----ATKGWLRVLSKEYPSLAFHASINKSFG 286 (457)
Q Consensus 211 ~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~----~~~~wl~~l~~~~p~~~f~iSa~~~~G 286 (457)
..+|++++|+|+.++. ....+...+.+ .+.|+|+|.||+|+.... ....|.+. +....+.+||+++.|
T Consensus 80 ~~~~~~i~v~D~~~~~--~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~SA~~~~~ 151 (165)
T 2wji_A 80 EKPDLVVNIVDATALE--RNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKI----LGVKVVPLSAAKKMG 151 (165)
T ss_dssp HCCSEEEEEEETTCHH--HHHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHH----HTSCEEECBGGGTBS
T ss_pred CCCCEEEEEecCCchh--HhHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHH----hCCCEEEEEcCCCCC
Confidence 4799999999997531 11112222332 378999999999985432 12333332 234567889999999
Q ss_pred hHHHHHHHHHH
Q 012726 287 KGSLLSVLRQF 297 (457)
Q Consensus 287 i~~Li~~L~~~ 297 (457)
+++|++.|.+.
T Consensus 152 v~~l~~~l~~~ 162 (165)
T 2wji_A 152 IEELKKAISIA 162 (165)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988654
No 306
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.00 E-value=6.9e-06 Score=74.16 Aligned_cols=90 Identities=21% Similarity=0.119 Sum_probs=60.5
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
..+..+|++|+|+|+.++.+.. .+..++.. . ..+.|+++|+||+||.+.. ........+........+.+||+
T Consensus 93 ~~~~~~d~vi~v~D~~~~~s~~--~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 170 (193)
T 2oil_A 93 AYYRGAVGALLVFDLTKHQTYA--VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSAL 170 (193)
T ss_dssp HHHTTCCEEEEEEETTCHHHHH--THHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 3567899999999998764321 22333322 1 2468999999999997532 12222333333444567889999
Q ss_pred CCCChHHHHHHHHHHHH
Q 012726 283 KSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~ 299 (457)
++.|+++|++.|.+.+.
T Consensus 171 ~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 171 DSTNVELAFETVLKEIF 187 (193)
T ss_dssp TCTTHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999998876653
No 307
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.00 E-value=3.6e-06 Score=85.05 Aligned_cols=104 Identities=17% Similarity=0.112 Sum_probs=68.1
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
.....+++|++|+... ...++..+|+||+|+|+.... ....+...+ ...|.++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~-----------------~~~~~~~aD~vl~V~d~~~~~--~~~~l~~~~----~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS-----------------EVAVANMVDTFVLLTLARTGD--QLQGIKKGV----LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH-----------------HHHHHTTCSEEEEEEESSTTC--TTTTCCTTS----GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH-----------------HHHHHHhCCEEEEEECCCCCc--cHHHHHHhH----hhcCCEEEEEC
Confidence 3455678899996421 123458999999999975332 111111111 24689999999
Q ss_pred CCCCChhhHHHHHHHHHhc----------CCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 253 CDLVPAWATKGWLRVLSKE----------YPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 253 iDLvp~~~~~~wl~~l~~~----------~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+|+.+........+.+... +...++.+||+++.|+++|.+.|.++++
T Consensus 227 ~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 227 ADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 9998654443333333321 1245778899999999999999988775
No 308
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.00 E-value=2.9e-06 Score=78.86 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=60.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCCh-------------hhHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPA-------------WATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~-------------~~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+++|.||+||.+. .........+...+.
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 5678999999999987643211 1223334444457899999999999642 111222223333334
Q ss_pred e-eEEEeeccCCCC-hHHHHHHHHHHHH
Q 012726 274 S-LAFHASINKSFG-KGSLLSVLRQFAR 299 (457)
Q Consensus 274 ~-~~f~iSa~~~~G-i~~Li~~L~~~~~ 299 (457)
. ..|.+||+++.| +++|++.|.+.+.
T Consensus 175 ~~~~~e~SA~~g~g~v~~lf~~l~~~~~ 202 (214)
T 3q3j_B 175 AEIYLEGSAFTSEKSIHSIFRTASMLCL 202 (214)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHh
Confidence 4 678899999998 9999999877664
No 309
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.00 E-value=3.3e-06 Score=77.57 Aligned_cols=92 Identities=12% Similarity=0.048 Sum_probs=61.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhh---------HHHHHHHHHhcCC-eeE
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWA---------TKGWLRVLSKEYP-SLA 276 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~---------~~~wl~~l~~~~p-~~~ 276 (457)
.+..+|++|+|+|+.++.+.... .+...+....++.|+|+|+||+||.+... .......+...+. ...
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAY 156 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEE
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceE
Confidence 57889999999999776422110 12233333335799999999999975432 1222233333333 367
Q ss_pred EEeeccCCCChHHHHHHHHHHHHh
Q 012726 277 FHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 277 f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
|.+||+++.|++++++.|.+.+..
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (212)
T 2j0v_A 157 IECSSKTQQNVKAVFDTAIKVVLQ 180 (212)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEccCCCCCCHHHHHHHHHHHHhh
Confidence 889999999999999998877653
No 310
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.99 E-value=1.6e-05 Score=75.69 Aligned_cols=115 Identities=15% Similarity=0.066 Sum_probs=71.6
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHH----HH-HhcCCCcEEEE
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERH----LK-EHCKHKHMILL 249 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~----L~-~~~~~K~vIlV 249 (457)
...+++|++|....... ..+...+.+.+.. ++|++|+|+....... .+... +. ....+.|.++|
T Consensus 109 ~d~iiiDtpG~~~~~~~--------~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~iv 177 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLF--------HEFGVRLMENLPY-PLVVYISDPEILKKPN--DYCFVRFFALLIDLRLGATTIPA 177 (262)
T ss_dssp CSEEEEECCSSHHHHHH--------SHHHHHHHHTSSS-CEEEEEECGGGCCSHH--HHHHHHHHHHHHHHHHTSCEEEE
T ss_pred CCEEEEeCCCccchhhh--------hhhHHHHHHHHhh-ceEEeccchhhhcCHH--HHHHHHHHHHHHhcccCCCeEEE
Confidence 34568999997643211 1234455566677 9999999986543322 22111 01 11236899999
Q ss_pred eecCCCCChhhH---HHHHH-------HH------------------HhcCC-eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 250 LNKCDLVPAWAT---KGWLR-------VL------------------SKEYP-SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 250 LNKiDLvp~~~~---~~wl~-------~l------------------~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
+||+|+.+.... ..+++ .+ ....+ ..++++||+++.|+++|++.|.+.++.
T Consensus 178 ~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 178 LNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp ECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 999999875422 22221 11 22223 356888999999999999999887764
No 311
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.98 E-value=6.4e-06 Score=72.16 Aligned_cols=89 Identities=16% Similarity=0.128 Sum_probs=59.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---H-hcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~-~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+..+|++++|+|+.++.+. ..+..++. . ...+.|+++|+||+|+.+.. ........+.+......+.+||++
T Consensus 75 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z08_A 75 YYRDSNGAILVYDITDEDSF--QKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ 152 (170)
T ss_dssp SSTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred HhccCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCC
Confidence 56789999999999775421 22333332 2 12468999999999997532 112222333334445678899999
Q ss_pred CCChHHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFAR 299 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~ 299 (457)
+.|+++|++.|.+.+.
T Consensus 153 ~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 153 NKGIEELFLDLCKRMI 168 (170)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999877653
No 312
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=97.98 E-value=3.5e-06 Score=94.63 Aligned_cols=106 Identities=20% Similarity=0.143 Sum_probs=67.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecC---------------CCCceeEEE----EEEc---------------C
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAP---------------IPGETKVWQ----YITL---------------T 350 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~---------------~pg~T~~~~----~~~~---------------~ 350 (457)
...+|+++|.+|+|||||+|+|+.......+. .+|.|.... .+.. +
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 45789999999999999999998642212111 223332111 1110 2
Q ss_pred CcEEEEecCCcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC
Q 012726 351 KRIFLIDCPGVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD 410 (457)
Q Consensus 351 ~~i~liDtPGi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~ 410 (457)
..+.||||||....... ..+|.++..++..+........+...+...+.+.+...||+|-
T Consensus 98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCc
Confidence 36899999998754322 3578888767666665444444444455566778889999983
No 313
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.97 E-value=4.7e-06 Score=85.62 Aligned_cols=108 Identities=14% Similarity=0.105 Sum_probs=69.1
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKiD 254 (457)
...+.|+||..+. .......+..+|++|+|+|+.++...........+.. .+.| +|+|+||+|
T Consensus 76 ~~~iiDtpG~~~f--------------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~--~~ip~iivviNK~D 139 (405)
T 2c78_A 76 HYSHVDCPGHADY--------------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ--VGVPYIVVFMNKVD 139 (405)
T ss_dssp EEEEEECCCSGGG--------------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHH--TTCCCEEEEEECGG
T ss_pred EEEEEECCChHHH--------------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHH--cCCCEEEEEEECcc
Confidence 3456788887532 2345566789999999999988754333333333333 3677 889999999
Q ss_pred CCC-hhhHH----HHHHHHHhcC----CeeEEEeeccCCCC------------------hHHHHHHHHHHHH
Q 012726 255 LVP-AWATK----GWLRVLSKEY----PSLAFHASINKSFG------------------KGSLLSVLRQFAR 299 (457)
Q Consensus 255 Lvp-~~~~~----~wl~~l~~~~----p~~~f~iSa~~~~G------------------i~~Li~~L~~~~~ 299 (457)
+.+ ..... ...+++.... ...++++||+++.| +.+|++.|.++++
T Consensus 140 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 140 MVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp GCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 985 22211 2223333322 14578889999876 6778888877665
No 314
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=97.97 E-value=4.5e-06 Score=77.73 Aligned_cols=90 Identities=16% Similarity=0.037 Sum_probs=57.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+..+|++|+|+|+.++.+. ..+..++. .. ..+.|+++|+||+||.+.. ........+........+.+||++
T Consensus 82 ~~~~~d~vilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 159 (223)
T 3cpj_B 82 YYRGAVGALIVYDISKSSSY--ENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALN 159 (223)
T ss_dssp GTTTCCEEEEEEC-CCHHHH--HHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-
T ss_pred HhccCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 56789999999999876432 22333332 21 2468999999999997532 112222333334455677889999
Q ss_pred CCChHHHHHHHHHHHHh
Q 012726 284 SFGKGSLLSVLRQFARL 300 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~~ 300 (457)
+.|+++|++.|.+.+..
T Consensus 160 ~~gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 160 SENVDKAFEELINTIYQ 176 (223)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999998877643
No 315
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.96 E-value=4.5e-06 Score=77.08 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=59.9
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
...+..+|++|+|+|+.++.+... ..+...+... ..+.|+++|+||+|+.... ....-...+........|.+||++
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 172 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKE 172 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 346789999999999987643211 1122222222 2468899999999997432 111112222223334567889999
Q ss_pred CCChHHHHHHHHHHHHh
Q 012726 284 SFGKGSLLSVLRQFARL 300 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~~~ 300 (457)
+.|+++|++.|.+.+..
T Consensus 173 g~gv~~l~~~l~~~i~~ 189 (201)
T 2ew1_A 173 SDNVEKLFLDLACRLIS 189 (201)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999988776643
No 316
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.96 E-value=1.4e-05 Score=87.40 Aligned_cols=122 Identities=21% Similarity=0.215 Sum_probs=83.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCc-----ee------cC------CCCceeEEEEE---EcCCcEEEEecCCcccC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVC-----KV------AP------IPGETKVWQYI---TLTKRIFLIDCPGVVYQ 364 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~-----~v------s~------~pg~T~~~~~~---~~~~~i~liDtPGi~~~ 364 (457)
...+|+++|.+|+|||||+++|++.... .+ .+ ..|.|...+.. .-+..+.|+||||....
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF 87 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence 4568999999999999999999842211 11 11 12444333322 22447899999998643
Q ss_pred CCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCCCCHHHHHHHHHHHcC
Q 012726 365 NKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDWVDENDFLLQLCKSTG 426 (457)
Q Consensus 365 ~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~~~~~efL~~la~r~g 426 (457)
... ..+|.++..++..+.+......+...+...+.+.+...|++|.....++.++.++...|
T Consensus 88 ~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~~~~~~~~~~l~~~l~ 154 (665)
T 2dy1_A 88 VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKGGDYYALLEDLRSTLG 154 (665)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGCCCHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchhhhHHHHHHHHHHHhC
Confidence 211 24677777666666666555666667777788889999999944667888999998877
No 317
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.94 E-value=1.8e-05 Score=80.60 Aligned_cols=107 Identities=12% Similarity=0.034 Sum_probs=68.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcE-EEEee-cC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLLN-KC 253 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~v-IlVLN-Ki 253 (457)
+..+.|+||..+ +...+...+..+|++|+|+| ..............+.. .+.|. |+|+| |+
T Consensus 61 ~i~iiDtPGh~~--------------f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~--~~i~~~ivvvNNK~ 123 (370)
T 2elf_A 61 NMVFVDAHSYPK--------------TLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDL--LGFKHGIIALTRSD 123 (370)
T ss_dssp EEEEEECTTTTT--------------CHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHH--TTCCEEEEEECCGG
T ss_pred EEEEEECCChHH--------------HHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHH--cCCCeEEEEEEecc
Confidence 345788888753 23445556789999999999 54432212222223332 35677 99999 99
Q ss_pred CCCChhhHHHHHH----HHHhcC--CeeEEE--eeccC---CCChHHHHHHHHHHHHh
Q 012726 254 DLVPAWATKGWLR----VLSKEY--PSLAFH--ASINK---SFGKGSLLSVLRQFARL 300 (457)
Q Consensus 254 DLvp~~~~~~wl~----~l~~~~--p~~~f~--iSa~~---~~Gi~~Li~~L~~~~~~ 300 (457)
|+ +........+ ++.... ...+++ +||.+ +.|+++|++.|.++++.
T Consensus 124 Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 124 ST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp GS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 99 6543322222 222211 246788 99999 99999999999887753
No 318
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.93 E-value=8.1e-06 Score=85.75 Aligned_cols=89 Identities=15% Similarity=0.079 Sum_probs=60.6
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhhHHHHHHHHHhc----CCeeEEE
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWATKGWLRVLSKE----YPSLAFH 278 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~----~p~~~f~ 278 (457)
..+..+|+||+|+|+.++.. ...+..++... ..++|+|+|+||+||.+........+.+... ....++.
T Consensus 385 ~~~~~ad~~i~V~D~~~~~s--~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (497)
T 3lvq_E 385 HYYTGTQGLIFVVDCADRDR--IDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQP 462 (497)
T ss_dssp GGGTTCCEEEEEEETTCGGG--HHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCSSCEEEEE
T ss_pred HHhccCCEEEEEEECcchhH--HHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhcCCeEEEE
Confidence 46789999999999987632 12233333321 2478999999999997643333333333222 2245788
Q ss_pred eeccCCCChHHHHHHHHHHH
Q 012726 279 ASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 279 iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+||+++.|+++|++.|.+.+
T Consensus 463 ~SA~~g~gi~~l~~~l~~~~ 482 (497)
T 3lvq_E 463 SCATSGDGLYEGLTWLTSNY 482 (497)
T ss_dssp CBTTTTBTHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 99999999999999997765
No 319
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.93 E-value=1.4e-05 Score=86.32 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=71.7
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.||||..+..... ...+..+|++|+|+|+.++.........+++.. .+.|+|+|+||+|+.
T Consensus 72 i~liDTPGhe~F~~~~--------------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~--~~vPiIVViNKiDl~ 135 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLR--------------KRGGALADLAILIVDINEGFKPQTQEALNILRM--YRTPFVVAANKIDRI 135 (594)
T ss_dssp EEEECCCTTSCCTTSB--------------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHH--TTCCEEEEEECGGGS
T ss_pred EEEEECCCcHHHHHHH--------------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHH--cCCeEEEEecccccc
Confidence 4578999975332110 124677999999999998654333344444443 478999999999997
Q ss_pred Chhh-------------------------HHHHHHHHHhcC--------------CeeEEEeeccCCCChHHHHHHHHHH
Q 012726 257 PAWA-------------------------TKGWLRVLSKEY--------------PSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 257 p~~~-------------------------~~~wl~~l~~~~--------------p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
+.+. .....+.+.+.+ ...++++||.++.|+++|++.|..+
T Consensus 136 ~~~~~~~~~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~ 215 (594)
T 1g7s_A 136 HGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGL 215 (594)
T ss_dssp TTCCCCTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred cccccccCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhh
Confidence 5321 012223333221 1357889999999999999999888
Q ss_pred HHh
Q 012726 298 ARL 300 (457)
Q Consensus 298 ~~~ 300 (457)
++.
T Consensus 216 ~~~ 218 (594)
T 1g7s_A 216 AQQ 218 (594)
T ss_dssp HHH
T ss_pred ccc
Confidence 763
No 320
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.93 E-value=5.3e-05 Score=68.87 Aligned_cols=121 Identities=14% Similarity=0.096 Sum_probs=64.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce-ecCCCCceeEEEEEEcCC---cEEEEecCCcccCCCC-----CccceEEEe
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK-VAPIPGETKVWQYITLTK---RIFLIDCPGVVYQNKD-----SETDIVLKG 376 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~-vs~~pg~T~~~~~~~~~~---~i~liDtPGi~~~~~~-----~e~dlvL~g 376 (457)
.++|+++|.+|||||||+|.|.+..... ..+..|++.....+.++. .+.++||||....... ..++.++.
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~- 107 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL- 107 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE-
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE-
Confidence 5789999999999999999999865432 223333322223344433 3457999997543211 23444444
Q ss_pred ccccCCc---ccHHHHHHHHHHh--cCcceehhhcCCCCC---CCHHHHHHHHHHHcCC
Q 012726 377 VVRVTNL---EDAAEHIGEVLKR--VKKEHLKRAYKIKDW---VDENDFLLQLCKSTGK 427 (457)
Q Consensus 377 vv~~~~l---~~~~~~i~~~L~~--~~~~~l~~~y~i~~~---~~~~efL~~la~r~g~ 427 (457)
|.+.... .+...++..+... ...+.+...+++|-. .-..+....+|...+.
T Consensus 108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~ 166 (191)
T 1oix_A 108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGL 166 (191)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTC
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCC
Confidence 2232222 1111222222221 234566777777631 1223455667777664
No 321
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.93 E-value=5.5e-06 Score=83.72 Aligned_cols=24 Identities=46% Similarity=0.689 Sum_probs=21.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHh
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLR 327 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~ 327 (457)
.....|+++|.||||||||+|.|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~ 100 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALG 100 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999996
No 322
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.92 E-value=1.2e-05 Score=72.65 Aligned_cols=89 Identities=12% Similarity=0.081 Sum_probs=58.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h--cCCCcEEEEeecCCCCC---hhhHHHHHHHHHhcCC-eeEEEe
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H--CKHKHMILLLNKCDLVP---AWATKGWLRVLSKEYP-SLAFHA 279 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~--~~~K~vIlVLNKiDLvp---~~~~~~wl~~l~~~~p-~~~f~i 279 (457)
.+..+|++++|+|+.++.+. ..+..++.. . ..+.|+++|.||+||.. ..........+...+. ...+.+
T Consensus 82 ~~~~~~~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 159 (184)
T 3ihw_A 82 FAAWVDAVVFVFSLEDEISF--QTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYET 159 (184)
T ss_dssp HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEE
T ss_pred eecCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEe
Confidence 45679999999999875432 222333332 1 14679999999999942 1122222233333343 566888
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
||+++.|++++++.|.+.+.
T Consensus 160 Sa~~~~gv~~lf~~l~~~i~ 179 (184)
T 3ihw_A 160 CATYGLNVERVFQDVAQKVV 179 (184)
T ss_dssp BTTTTBTHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHH
Confidence 99999999999998876654
No 323
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.92 E-value=3.3e-06 Score=80.79 Aligned_cols=120 Identities=12% Similarity=0.018 Sum_probs=74.3
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcC---CCcEEEEee-
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCK---HKHMILLLN- 251 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~---~K~vIlVLN- 251 (457)
+..++|+||+.+.... .....+.+.+.++..+..+|++|+|+|+.. +......+.+.+.+... .+|.|+|+|
T Consensus 72 ~i~iiDTpG~~~~~~~---~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~n 147 (260)
T 2xtp_A 72 EIVIIDTPDMFSWKDH---CEALYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTH 147 (260)
T ss_dssp EEEEEECCGGGGSSCC---CHHHHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred EEEEEECcCCCCCCCC---HHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEc
Confidence 4567899998643211 000113445666677889999999999975 33333344455554211 468888888
Q ss_pred cCCCCChhhHHH------------HHHHHHhcCC-eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 252 KCDLVPAWATKG------------WLRVLSKEYP-SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 252 KiDLvp~~~~~~------------wl~~l~~~~p-~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
|+|+.+.. ... +++.+...+. ...+.+||..+.|+++|++.|.+.++.
T Consensus 148 K~Dl~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 148 KEDLNGGS-LMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp GGGGTTCC-HHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcc-HHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 99998542 222 2222222111 111567999999999999999887754
No 324
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.91 E-value=2.4e-05 Score=71.85 Aligned_cols=88 Identities=18% Similarity=0.121 Sum_probs=53.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH----H---hcCCCcEEEEeecCCCCChhhHHHHHHHH----H--------
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK----E---HCKHKHMILLLNKCDLVPAWATKGWLRVL----S-------- 269 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~----~---~~~~K~vIlVLNKiDLvp~~~~~~wl~~l----~-------- 269 (457)
.+..+|++|+|+|+.++..+ ...+.+++. . ...+.|+++|+||+||.+........+.+ .
T Consensus 75 ~~~~~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 153 (214)
T 2fh5_B 75 FKSSARAVVFVVDSAAFQRE-VKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSA 153 (214)
T ss_dssp HGGGEEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHhhCCEEEEEEECCCcCHH-HHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchh
Confidence 47889999999999752211 112222222 1 12468999999999998643222222222 1
Q ss_pred -----------h-------------cC--CeeEEEeeccCC------CChHHHHHHHHHH
Q 012726 270 -----------K-------------EY--PSLAFHASINKS------FGKGSLLSVLRQF 297 (457)
Q Consensus 270 -----------~-------------~~--p~~~f~iSa~~~------~Gi~~Li~~L~~~ 297 (457)
+ .. ....|.+||+++ .|+++|.+.|.+.
T Consensus 154 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 154 APSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred ccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1 11 345778899999 9999999888653
No 325
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.91 E-value=1.3e-05 Score=72.63 Aligned_cols=92 Identities=21% Similarity=0.110 Sum_probs=59.8
Q ss_pred HhhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
..+..+|++|+|+|+.++.+... ..+...+... ..+.|+|+|+||+|+.+.. ........+...+....|.+||++
T Consensus 94 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 173 (196)
T 2atv_A 94 GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACT 173 (196)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTT
T ss_pred hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCc
Confidence 45678899999999987643211 1122223221 2478999999999997532 112222233333345678899999
Q ss_pred CC-ChHHHHHHHHHHHH
Q 012726 284 SF-GKGSLLSVLRQFAR 299 (457)
Q Consensus 284 ~~-Gi~~Li~~L~~~~~ 299 (457)
+. |++++++.|.+.+.
T Consensus 174 g~~gi~~l~~~l~~~i~ 190 (196)
T 2atv_A 174 GEGNITEIFYELCREVR 190 (196)
T ss_dssp CTTCHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99 99999998876654
No 326
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.91 E-value=3.7e-06 Score=75.66 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=57.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChh-------------hHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~-------------~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+|+.+.. +...-...+.+.+.
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 154 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcC
Confidence 5678999999999977542211 11223333334578999999999997421 11111222222222
Q ss_pred -eeEEEeecc-CCCChHHHHHHHHHHH
Q 012726 274 -SLAFHASIN-KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 274 -~~~f~iSa~-~~~Gi~~Li~~L~~~~ 298 (457)
...+.+||+ ++.|+++|++.|.+.+
T Consensus 155 ~~~~~e~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 155 AATYIECSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp CSEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred CcEEEEeeecCCCcCHHHHHHHHHHHH
Confidence 457788998 6899999998887654
No 327
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.90 E-value=1.5e-05 Score=70.77 Aligned_cols=89 Identities=11% Similarity=0.083 Sum_probs=57.5
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHH---HHHHh----cCCCcEEEEeecCCCCC---hhhHHHHHHHH-HhcCCeeEE
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLER---HLKEH----CKHKHMILLLNKCDLVP---AWATKGWLRVL-SKEYPSLAF 277 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k---~L~~~----~~~K~vIlVLNKiDLvp---~~~~~~wl~~l-~~~~p~~~f 277 (457)
.+..+|++|+|+|+.++.+. ..+.. ++... .++.|+++|.||+|+.+ ......-...+ ........|
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~ 146 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSF--QAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYY 146 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEE
T ss_pred HHHhCCEEEEEEECcCHHHH--HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEE
Confidence 45779999999999876432 22333 33332 14689999999999931 11111112222 222345677
Q ss_pred EeeccCCCChHHHHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.+||+++.|++++++.|.+.+.
T Consensus 147 ~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 147 ETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHH
Confidence 8899999999999988876553
No 328
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.90 E-value=5.5e-06 Score=81.19 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=59.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCCH--HHHHHHHHhcCCCcEEEEeecCCCCChhhH-------------HHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCH--HLERHLKEHCKHKHMILLLNKCDLVPAWAT-------------KGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~--~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~-------------~~wl~~l~~~~p 273 (457)
.+..+|++++|+|+.++.+.... .+...+....++.|+|+|+||+||.+.... ......+.....
T Consensus 223 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 302 (332)
T 2wkq_A 223 SYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302 (332)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred hccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcC
Confidence 56889999999999776432111 122334433457999999999999653211 111222223333
Q ss_pred -eeEEEeeccCCCChHHHHHHHHHHH
Q 012726 274 -SLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 274 -~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
...|.+||+++.|+++|++.|.+.+
T Consensus 303 ~~~~~~~Sa~~~~gi~~l~~~l~~~~ 328 (332)
T 2wkq_A 303 AVKYLECSALTQRGLKTVFDEAIRAV 328 (332)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3678899999999999999987665
No 329
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.89 E-value=2e-06 Score=83.96 Aligned_cols=113 Identities=17% Similarity=0.129 Sum_probs=66.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||........ ....+.+..+. ...+|+|++|+|+.+.. +...+...+.+ .+.|+|+|+||+|+
T Consensus 50 ~l~l~DtpG~~~~~~~~-----~~e~v~~~~~~-~~~~d~vi~V~D~t~~e--~~~~~~~~l~~--~~~p~ilv~NK~Dl 119 (272)
T 3b1v_A 50 DLEIQDLPGIYSMSPYS-----PEAKVARDYLL-SQRADSILNVVDATNLE--RNLYLTTQLIE--TGIPVTIALNMIDV 119 (272)
T ss_dssp TEEEEECCCCSCSSCSS-----HHHHHHHHHHH-TTCCSEEEEEEEGGGHH--HHHHHHHHHHH--TCSCEEEEEECHHH
T ss_pred eEEEEECCCcCccCCCC-----hHHHHHHHHHh-cCCCCEEEEEecCCchH--hHHHHHHHHHh--cCCCEEEEEEChhh
Confidence 34467888875332110 11233333332 25799999999997631 11222233333 47999999999998
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
........-.+.+.+.....++.+||.++.|+++|++.|.+.+
T Consensus 120 ~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~ 162 (272)
T 3b1v_A 120 LDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT 162 (272)
T ss_dssp HHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred CCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 6432111111222222234577889999999999999886543
No 330
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.88 E-value=3.7e-06 Score=81.36 Aligned_cols=113 Identities=24% Similarity=0.252 Sum_probs=70.3
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCC-CcEEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKH-KHMILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~-K~vIlVLNKiDL 255 (457)
..+.|+||+...... .........+-....+|+|++|+|+.++. +...+...+.. .+ .|+++|+||+|+
T Consensus 52 ~~l~DtpG~~~~~~~------~~~~~~~~~~~~~~~~d~vi~v~D~~~~~--~~~~~~~~~~~--~~~~p~ilv~NK~Dl 121 (271)
T 3k53_A 52 FLVVDLPGIYSLTAH------SIDELIARNFILDGNADVIVDIVDSTCLM--RNLFLTLELFE--MEVKNIILVLNKFDL 121 (271)
T ss_dssp EEEEECCCCSCCCSS------CHHHHHHHHHHHTTCCSEEEEEEEGGGHH--HHHHHHHHHHH--TTCCSEEEEEECHHH
T ss_pred EEEEeCCCccccccC------CHHHHHHHHhhhccCCcEEEEEecCCcch--hhHHHHHHHHh--cCCCCEEEEEEChhc
Confidence 446888887532211 11222222333457899999999997642 22222222322 24 999999999998
Q ss_pred CChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 256 VPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 256 vp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
.+........+.+.+.+...++++||..+.|+.+|++.|...+.
T Consensus 122 ~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 122 LKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp HHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 75432211133344444456788999999999999999987764
No 331
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=97.88 E-value=2.2e-05 Score=81.49 Aligned_cols=98 Identities=15% Similarity=0.062 Sum_probs=60.9
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|+||..+. .......+..+|++|+|+|+.++...........+.. ..-+|+|+|+||+|+.
T Consensus 106 ~~iiDtpGh~~f--------------~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~~~iIvviNK~Dl~ 170 (434)
T 1zun_B 106 FIIADTPGHEQY--------------TRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGIKHIVVAINKMDLN 170 (434)
T ss_dssp EEEEECCCSGGG--------------HHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEEEEEECTTTT
T ss_pred EEEEECCChHHH--------------HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCCCeEEEEEEcCcCC
Confidence 446788885432 1223446789999999999988763322222223322 2234689999999998
Q ss_pred Ch--hh----HHHHHHHHHhcC---C-eeEEEeeccCCCChHH
Q 012726 257 PA--WA----TKGWLRVLSKEY---P-SLAFHASINKSFGKGS 289 (457)
Q Consensus 257 p~--~~----~~~wl~~l~~~~---p-~~~f~iSa~~~~Gi~~ 289 (457)
+. +. ...+.+++.... + ..++++||++|.|+.+
T Consensus 171 ~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~ 213 (434)
T 1zun_B 171 GFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN 213 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred cccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence 62 21 223333333332 1 5678899999999886
No 332
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.88 E-value=4.6e-06 Score=80.94 Aligned_cols=83 Identities=10% Similarity=0.104 Sum_probs=45.2
Q ss_pred cCEEEEEeeCCC-CCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHh---cCCeeEEEeeccCCCChH
Q 012726 213 SDVVVQVLDARD-PQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSK---EYPSLAFHASINKSFGKG 288 (457)
Q Consensus 213 sDvIL~VvDard-p~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~---~~p~~~f~iSa~~~~Gi~ 288 (457)
+|++|+++|... ++...+..+.+.+. .++|+|+|+||+|+++........+.+.+ .....++.+|+.++.|+.
T Consensus 116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~ 192 (274)
T 3t5d_A 116 VQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN 192 (274)
T ss_dssp CCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC---------
T ss_pred eeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHH
Confidence 778888886543 44444444444443 37999999999999876655444333322 233446667999999999
Q ss_pred HHHHHHHHHH
Q 012726 289 SLLSVLRQFA 298 (457)
Q Consensus 289 ~Li~~L~~~~ 298 (457)
+|.+.|.+.+
T Consensus 193 ~l~~~l~~~~ 202 (274)
T 3t5d_A 193 KLVKKIKDRL 202 (274)
T ss_dssp --CHHHHHTC
T ss_pred HHHHHHhcCC
Confidence 9988887654
No 333
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.88 E-value=1.7e-05 Score=79.32 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=63.0
Q ss_pred HHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH-----hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcC----CeeEE
Q 012726 207 YKVIDSSDVVVQVLDARDPQGTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEY----PSLAF 277 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~----p~~~f 277 (457)
...+..+|+||+|+|+.++.+. ..+..++.. ..++.|+|+|+||+||.+......+...+.... ...+|
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~--~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~ 304 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERV--NEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQ 304 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSH--HHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEE
T ss_pred HHHhccCCEEEEEEECCchHHH--HHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEE
Confidence 3456789999999999776432 223333322 124789999999999987554455555554332 35678
Q ss_pred EeeccCCCChHHHHHHHHHHH
Q 012726 278 HASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 278 ~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
.+||+++.|+++|++.|.+.+
T Consensus 305 ~vSAk~g~gi~el~~~l~~~l 325 (329)
T 3o47_A 305 ATCATSGDGLYEGLDWLSNQL 325 (329)
T ss_dssp ECBTTTTBTHHHHHHHHHHHH
T ss_pred EEECCCCcCHHHHHHHHHHHH
Confidence 899999999999999988765
No 334
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=97.88 E-value=7.2e-06 Score=76.03 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=59.4
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+||.+........... .......|.+||+++.|+
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFH-RKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHH-HHHTCEEEECBGGGTBTT
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHH-HHcCCEEEEEeCCCCCCH
Confidence 4568999999999987643221 12223333334578999999999997643222111111 222345778899999999
Q ss_pred HHHHHHHHHHHH
Q 012726 288 GSLLSVLRQFAR 299 (457)
Q Consensus 288 ~~Li~~L~~~~~ 299 (457)
+++++.|.+.+.
T Consensus 163 ~~l~~~l~~~l~ 174 (221)
T 3gj0_A 163 EKPFLWLARKLI 174 (221)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999877654
No 335
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=97.86 E-value=9.8e-06 Score=84.16 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=75.8
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
..+.|++|+.+... + + ....+....++..+|++|+|+|+ ........+.+.+.+ .+.|+|+|+||+|+.
T Consensus 85 l~liDTpG~~d~~~--l---~--~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~--~~~piIvV~NK~Dl~ 153 (423)
T 3qq5_A 85 VTLVDTPGLDDVGE--L---G--RLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKE--MEIPFVVVVNKIDVL 153 (423)
T ss_dssp EEEEECSSTTCCCT--T---C--CCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHH--TTCCEEEECCCCTTT
T ss_pred EEEEECcCCCcccc--h---h--HHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHh--cCCCEEEEEeCcCCC
Confidence 44688998763211 1 0 11234456778899999999998 222223334444444 379999999999998
Q ss_pred ChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 257 PAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 257 p~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+.... ...+.+.+.+...++.+||+++.|+++|++.|.+.++
T Consensus 154 ~~~~~-~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~ 195 (423)
T 3qq5_A 154 GEKAE-ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP 195 (423)
T ss_dssp TCCCT-HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred CccHH-HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence 65433 3444555555566778899999999999999988874
No 336
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.86 E-value=1.7e-05 Score=81.34 Aligned_cols=109 Identities=14% Similarity=0.105 Sum_probs=68.4
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKiD 254 (457)
...+.|+||..+ +...+...+..+|++|+|+|+.+............+.. .+.| +|+|+||+|
T Consensus 67 ~~~iiDtpG~~~--------------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~--~~vp~iivviNK~D 130 (397)
T 1d2e_A 67 HYAHTDCPGHAD--------------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ--IGVEHVVVYVNKAD 130 (397)
T ss_dssp EEEEEECSSHHH--------------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCCEEEEEECGG
T ss_pred EEEEEECCChHH--------------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH--cCCCeEEEEEECcc
Confidence 344678888753 23345567889999999999988653322222233332 3677 689999999
Q ss_pred CCC-hhhH----HHHHHHHHhc-C---CeeEEEeeccCCCC----------hHHHHHHHHHHHHh
Q 012726 255 LVP-AWAT----KGWLRVLSKE-Y---PSLAFHASINKSFG----------KGSLLSVLRQFARL 300 (457)
Q Consensus 255 Lvp-~~~~----~~wl~~l~~~-~---p~~~f~iSa~~~~G----------i~~Li~~L~~~~~~ 300 (457)
+.+ .... ....+++... + ...++++||+++.| +.+|++.|.++++.
T Consensus 131 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 131 AVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 985 2221 1222333332 2 14578889998664 67888888776653
No 337
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.86 E-value=6.5e-06 Score=79.95 Aligned_cols=119 Identities=13% Similarity=0.111 Sum_probs=71.8
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEE-EEEeeCCCCCCCCCH-HHHHHHHHhcCCCcEEEEeec
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVV-VQVLDARDPQGTRCH-HLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvI-L~VvDardp~~s~~~-~l~k~L~~~~~~K~vIlVLNK 252 (457)
....++|+||+........ .......+...+..++..+|.+ |+|+|+.+++...+. .+.+.+.. .+.|+|+|+||
T Consensus 125 ~~l~lvDtpG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~--~~~~~i~V~NK 201 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQ-PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP--QGQRTIGVITK 201 (299)
T ss_dssp CSEEEEECCCBCSSCCSSS-CTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT--TCSSEEEEEEC
T ss_pred CCceEEeCCCCCCCcCCCC-CchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC--CCCeEEEEEEc
Confidence 4556789999853210000 0000013334455677777755 489999887655432 24444432 36899999999
Q ss_pred CCCCChhh-HHHHHHHHHhc-C----C-eeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 253 CDLVPAWA-TKGWLRVLSKE-Y----P-SLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 253 iDLvp~~~-~~~wl~~l~~~-~----p-~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+|+++... ...+ +... + . ..++.+||+++.|+++|.+.|.+..+
T Consensus 202 ~Dl~~~~~~~~~~---~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~ 252 (299)
T 2aka_B 202 LDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 252 (299)
T ss_dssp GGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred cccCCCCchHHHH---HhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence 99986542 2222 3222 1 1 34567899999999999998876443
No 338
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.86 E-value=3.6e-05 Score=70.36 Aligned_cols=90 Identities=18% Similarity=0.151 Sum_probs=59.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---Hhc--CCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHC--KHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~--~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++|+|+|+.++.+.. .+..++. ... .+.|+|+|.||+||.+.. +...-...+...+....+.+||+
T Consensus 93 ~~~~~d~~ilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 93 CLQTGDAFLIVFSVTDRRSFS--KVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAA 170 (195)
T ss_dssp HHHHCSEEEEEEETTCHHHHH--THHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTT
T ss_pred hhccCCEEEEEEECCCHHHHH--HHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCC
Confidence 356899999999997754321 2233332 221 378999999999997532 11222223333444567888999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|++++++.|.+.+..
T Consensus 171 ~~~~v~~lf~~l~~~i~~ 188 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIRL 188 (195)
T ss_dssp TTBSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999998776643
No 339
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.82 E-value=1.6e-05 Score=73.55 Aligned_cols=127 Identities=13% Similarity=0.055 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCC-----CCceecCCCCceeE----------EEEEE-----
Q 012726 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK-----NVCKVAPIPGETKV----------WQYIT----- 348 (457)
Q Consensus 289 ~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~-----~~~~vs~~pg~T~~----------~~~~~----- 348 (457)
+..+.++...+. .....|+++|.+|||||||+|.|.+. .++.+..-|++|.+ ...+.
T Consensus 16 ~~~~~~~~~~~~---~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~ 92 (221)
T 2wsm_A 16 RLAEKNREALRE---SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKEC 92 (221)
T ss_dssp HHHHHHHHHHHH---HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCS
T ss_pred HHHHHHHHhhcc---cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCcee
Confidence 344445544432 24568999999999999999999853 34444445554311 11111
Q ss_pred --------------cCCcEEEEecCCc-ccCCC-CCccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCCC-
Q 012726 349 --------------LTKRIFLIDCPGV-VYQNK-DSETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKDW- 411 (457)
Q Consensus 349 --------------~~~~i~liDtPGi-~~~~~-~~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~~- 411 (457)
.+..+.++||||. ..|.. +-..+.++..+........ ....+.....+.+.+.+++|..
T Consensus 93 ~~~~~~~~~~~~~~~~~d~iiidt~G~~~~~~~~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~ 168 (221)
T 2wsm_A 93 HLDAHMIYHRLKKFSDCDLLLIENVGNLICPVDFDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAE 168 (221)
T ss_dssp SCCHHHHHTTGGGGTTCSEEEEEEEEBSSGGGGCCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHH
T ss_pred ecccHHHHHHHHhcCCCCEEEEeCCCCCCCCchhccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCc
Confidence 1235789999994 22211 1123444443333222111 1112223345778888999842
Q ss_pred ---CCHHHHHHHHH
Q 012726 412 ---VDENDFLLQLC 422 (457)
Q Consensus 412 ---~~~~efL~~la 422 (457)
.+.+++.+.+.
T Consensus 169 ~~~~~~~~~~~~~~ 182 (221)
T 2wsm_A 169 AVGADVEKMKADAK 182 (221)
T ss_dssp HHTCCHHHHHHHHH
T ss_pred chhhHHHHHHHHHH
Confidence 24455554443
No 340
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.80 E-value=8.5e-06 Score=72.98 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=55.0
Q ss_pred hccCEEEEEeeCCCCCCCCCHHHHHHHHH-hcCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHH
Q 012726 211 DSSDVVVQVLDARDPQGTRCHHLERHLKE-HCKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGS 289 (457)
Q Consensus 211 ~~sDvIL~VvDardp~~s~~~~l~k~L~~-~~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~ 289 (457)
..+|++++|+|+.+. ..+..++.. ...+.|+|+|+||+|+..........+.+.+.+....+.+||+++.|+++
T Consensus 84 ~~~~~~i~v~d~~~~-----~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (188)
T 2wjg_A 84 EKPDLVVNIVDATAL-----ERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE 158 (188)
T ss_dssp HCCSEEEEEEEGGGH-----HHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred cCCCEEEEEecchhH-----HHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHH
Confidence 468999999998642 222333322 12478999999999986432111112223333334567889999999999
Q ss_pred HHHHHHHHHH
Q 012726 290 LLSVLRQFAR 299 (457)
Q Consensus 290 Li~~L~~~~~ 299 (457)
|++.|.+.+.
T Consensus 159 l~~~i~~~~~ 168 (188)
T 2wjg_A 159 LKKAISIAVK 168 (188)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9999987764
No 341
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.79 E-value=1.4e-05 Score=80.38 Aligned_cols=76 Identities=17% Similarity=0.293 Sum_probs=48.6
Q ss_pred ccceEEEEeecCCCchHHHHHHHh------CCCCceecCCCCceeEE------------------EEE------------
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLR------TKNVCKVAPIPGETKVW------------------QYI------------ 347 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~------~~~~~~vs~~pg~T~~~------------------~~~------------ 347 (457)
.....|+++|.||+||||++|.|. +.+++.++.-|++|... .++
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 456789999999999999999996 44555555555544310 000
Q ss_pred ------------EcCCcEEEEecCCcccCCC--CCccceEEEeccc
Q 012726 348 ------------TLTKRIFLIDCPGVVYQNK--DSETDIVLKGVVR 379 (457)
Q Consensus 348 ------------~~~~~i~liDtPGi~~~~~--~~e~dlvL~gvv~ 379 (457)
.-+..+.|+||||+..+.. ...+|+++..+..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~ 179 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIA 179 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeC
Confidence 0134799999999875422 2467877775544
No 342
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.76 E-value=2.5e-05 Score=71.29 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=60.6
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeecc
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+..+|++|+|+|+.++.+. ..+..++... ..+.|+|+|+||+||.+... .......+...+....|.+||+
T Consensus 92 ~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 169 (201)
T 3oes_A 92 FIIGVHGYVLVYSVTSLHSF--QVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSAR 169 (201)
T ss_dssp GTTTCCEEEEEEETTCHHHH--HHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTT
T ss_pred HHhcCCEEEEEEeCCCHHHH--HHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCC
Confidence 56789999999999765321 2233333321 23689999999999975321 1222233333344567889999
Q ss_pred CCCChHHHHHHHHHHHHhh
Q 012726 283 KSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~~ 301 (457)
++.|++++++.|.+.+...
T Consensus 170 ~~~~v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 170 ENQLTQGIFTKVIQEIARV 188 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHhh
Confidence 9999999999988776543
No 343
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.76 E-value=3.9e-05 Score=79.49 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=34.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceec------CCCCceeEEEEEE-------cCCcEEEEecCCccc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVA------PIPGETKVWQYIT-------LTKRIFLIDCPGVVY 363 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs------~~pg~T~~~~~~~-------~~~~i~liDtPGi~~ 363 (457)
-.++|++||.+|||||||+|+|++......+ ..+.++. ...+. +...+.++||||+..
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~-~~~i~~v~q~~~~~~~Ltv~Dt~g~~~ 100 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ-VEQSKVLIKEGGVQLLLTIVDTPGFGD 100 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE-EEEEECC------CEEEEEEECC----
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee-eeeEEEEEecCCcccceeeeechhhhh
Confidence 3578999999999999999999986542221 0111221 11111 122578999999965
No 344
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.75 E-value=2.4e-05 Score=78.66 Aligned_cols=24 Identities=50% Similarity=0.803 Sum_probs=21.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHh
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLR 327 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~ 327 (457)
..+..++++|.||+|||||+|.|.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~ 76 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALG 76 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999999998
No 345
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.74 E-value=0.00027 Score=73.09 Aligned_cols=116 Identities=22% Similarity=0.190 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCCCCceec----CCCCceeEEEEEEc--CCcEEEEecCCcc
Q 012726 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVA----PIPGETKVWQYITL--TKRIFLIDCPGVV 362 (457)
Q Consensus 289 ~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs----~~pg~T~~~~~~~~--~~~i~liDtPGi~ 362 (457)
++.+.+++++.... .....++++|.+|+|||||+|+|.|......+ ..+.+|+....... ..++.++|+||+.
T Consensus 53 ~~~~~i~~~L~~~~-~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~ 131 (413)
T 1tq4_A 53 LTNSAISDALKEID-SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIG 131 (413)
T ss_dssp HHHHHHHHHHHHHH-HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGG
T ss_pred ccchhhhhhhhhcc-cCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhccc
Confidence 33444554444322 24567999999999999999999984322111 11112322111111 2478999999997
Q ss_pred cCCCC----------CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcC
Q 012726 363 YQNKD----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYK 407 (457)
Q Consensus 363 ~~~~~----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~ 407 (457)
..... .+.+..+. +...........+...|...+++.+.+.++
T Consensus 132 ~~~~~~~~~L~~~~L~~~~~~~~--lS~G~~~kqrv~la~aL~~~~~p~~lV~tk 184 (413)
T 1tq4_A 132 STNFPPDTYLEKMKFYEYDFFII--ISATRFKKNDIDIAKAISMMKKEFYFVRTK 184 (413)
T ss_dssp GSSCCHHHHHHHTTGGGCSEEEE--EESSCCCHHHHHHHHHHHHTTCEEEEEECC
T ss_pred chHHHHHHHHHHcCCCccCCeEE--eCCCCccHHHHHHHHHHHhcCCCeEEEEec
Confidence 54321 11233222 222222333445566666666666555554
No 346
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=97.73 E-value=2.5e-05 Score=85.91 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=71.0
Q ss_pred cCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHH-HHHHHhcCCCcEEEEeecCCC
Q 012726 177 AEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLE-RHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 177 ~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~-k~L~~~~~~K~vIlVLNKiDL 255 (457)
..++|+||+..... ....+...+..+|+||+|+|+..+.+..+..+. +.+.. .++|+++|+||+|+
T Consensus 176 l~LiDTPGl~~~~~-----------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl 242 (695)
T 2j69_A 176 IEIVDSPGLNDTEA-----------RNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQ 242 (695)
T ss_dssp EEEEECCCHHHHHT-----------CHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGG
T ss_pred eEEEECCCCCchhh-----------HHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECccc
Confidence 45789999864321 123455677899999999999887654332222 22221 36789999999999
Q ss_pred CChh--------hHH----HH----HHHHHhcC--------CeeEEEeecc--------------CCCChHHHHHHHHHH
Q 012726 256 VPAW--------ATK----GW----LRVLSKEY--------PSLAFHASIN--------------KSFGKGSLLSVLRQF 297 (457)
Q Consensus 256 vp~~--------~~~----~w----l~~l~~~~--------p~~~f~iSa~--------------~~~Gi~~Li~~L~~~ 297 (457)
++.. ... .. ...+.... ...+|++||+ ++.|+++|.+.|.++
T Consensus 243 ~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~ 322 (695)
T 2j69_A 243 VRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTF 322 (695)
T ss_dssp GGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHH
T ss_pred ccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHH
Confidence 7543 111 11 11222211 1346889999 999999999998876
Q ss_pred HH
Q 012726 298 AR 299 (457)
Q Consensus 298 ~~ 299 (457)
+.
T Consensus 323 l~ 324 (695)
T 2j69_A 323 LT 324 (695)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 347
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=97.73 E-value=1.1e-05 Score=74.59 Aligned_cols=90 Identities=17% Similarity=0.183 Sum_probs=57.3
Q ss_pred hhhccCEEEEEeeCCCCCCCCC--HHHHHHHHHhcCCCcEEEEeecCCCCChh-------------hHHHHHHHHHhcCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC--HHLERHLKEHCKHKHMILLLNKCDLVPAW-------------ATKGWLRVLSKEYP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~--~~l~k~L~~~~~~K~vIlVLNKiDLvp~~-------------~~~~wl~~l~~~~p 273 (457)
.+..+|++|+|+|+.++.+... ..+...+....++.|+|+|+||+|+.+.. +.......+.+.+.
T Consensus 96 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 175 (205)
T 1gwn_A 96 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175 (205)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcC
Confidence 5678999999999977542211 11223333334578999999999997421 11111222332222
Q ss_pred -eeEEEeecc-CCCChHHHHHHHHHHH
Q 012726 274 -SLAFHASIN-KSFGKGSLLSVLRQFA 298 (457)
Q Consensus 274 -~~~f~iSa~-~~~Gi~~Li~~L~~~~ 298 (457)
...|.+||+ ++.|++++++.|.+.+
T Consensus 176 ~~~~~e~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 176 AATYIECSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp CSEEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeeeccCCcCHHHHHHHHHHHH
Confidence 456788998 6899999998887654
No 348
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.71 E-value=1e-05 Score=86.45 Aligned_cols=132 Identities=19% Similarity=0.216 Sum_probs=81.4
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||........ ...+..+|++|+|+|+.++...........+.. .+.|+|+|+||+|+
T Consensus 53 ~i~~iDTPGhe~f~~~~--------------~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~--~~vPiIVViNKiDl 116 (537)
T 3izy_P 53 KITFLDTPGHAAFSAMR--------------ARGTQVTDIVILVVAADDGVMKQTVESIQHAKD--AHVPIVLAINKCDK 116 (537)
T ss_dssp CCBCEECSSSCCTTTSB--------------BSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHT--TTCCEEECCBSGGG
T ss_pred EEEEEECCChHHHHHHH--------------HHHHccCCEEEEEEECCCCccHHHHHHHHHHHH--cCCcEEEEEecccc
Confidence 34578899854322111 124577999999999988654433333333332 47899999999999
Q ss_pred CChh--hHHHHHHHHH---hcC--CeeEEEeeccCCCChHHHHHHHHHHHHhhcC--------------------ccceE
Q 012726 256 VPAW--ATKGWLRVLS---KEY--PSLAFHASINKSFGKGSLLSVLRQFARLKSD--------------------KQAIS 308 (457)
Q Consensus 256 vp~~--~~~~wl~~l~---~~~--p~~~f~iSa~~~~Gi~~Li~~L~~~~~~~~~--------------------~~~i~ 308 (457)
.+.. .....+..+. ..+ ...++++||+++.|+++|++.|..++..... ...+.
T Consensus 117 ~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~ 196 (537)
T 3izy_P 117 AEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVT 196 (537)
T ss_dssp TTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCE
T ss_pred cccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEE
Confidence 7421 1111111111 111 2467788999999999999999887653210 12345
Q ss_pred EEEeecCCCchHHHH
Q 012726 309 VGFVGYPNVGKSSVI 323 (457)
Q Consensus 309 v~vvG~pNvGKSSli 323 (457)
.+.|+..++++++.+
T Consensus 197 ~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 197 TAIIQRGTLRKGSIL 211 (537)
T ss_dssp EEEEEEECCSSEEEE
T ss_pred EEEEecCEEEcCCEE
Confidence 566777777776643
No 349
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=97.70 E-value=7.3e-05 Score=77.53 Aligned_cols=99 Identities=12% Similarity=0.040 Sum_probs=60.0
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCC-------CCCCCHHHHHHHHHhcCCCcEE
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDP-------QGTRCHHLERHLKEHCKHKHMI 247 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp-------~~s~~~~l~k~L~~~~~~K~vI 247 (457)
....+.|+||..+. .......+..+|++|+|+|+.+. +..........+.. ..-+++|
T Consensus 84 ~~~~iiDtpG~~~f--------------~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRDF--------------VKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGLDQLI 148 (435)
T ss_dssp CEEEECCCSSSTTH--------------HHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTCTTCE
T ss_pred eEEEEEECCCcHHH--------------HHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEE
Confidence 34456788886532 23455678899999999999874 22111222222222 1234689
Q ss_pred EEeecCCCCCh----hh----HHHHHHHHHhcC----CeeEEEeeccCCCChH
Q 012726 248 LLLNKCDLVPA----WA----TKGWLRVLSKEY----PSLAFHASINKSFGKG 288 (457)
Q Consensus 248 lVLNKiDLvp~----~~----~~~wl~~l~~~~----p~~~f~iSa~~~~Gi~ 288 (457)
+|+||+|+.+. .. .....+++.... ...++++||.++.|+.
T Consensus 149 vviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~ 201 (435)
T 1jny_A 149 VAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT 201 (435)
T ss_dssp EEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred EEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccc
Confidence 99999999872 11 122233333322 1567889999999986
No 350
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=97.70 E-value=1e-05 Score=87.46 Aligned_cols=109 Identities=19% Similarity=0.131 Sum_probs=60.8
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCC-------CCCCHHHHHHHHHhcCCCc-E
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQ-------GTRCHHLERHLKEHCKHKH-M 246 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~-------~s~~~~l~k~L~~~~~~K~-v 246 (457)
....++|+||..+..... ...+..+|++|+|+|+.++. ..........+.. .+.| +
T Consensus 255 ~~i~iiDTPGh~~f~~~~--------------~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~--lgip~i 318 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGM--------------IAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA--LGISEI 318 (592)
T ss_dssp ----CCEEESSSEEEEEC--------------CC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH--SSCCCE
T ss_pred eEEEEEECCChHHHHHHH--------------HHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH--cCCCeE
Confidence 455678999976433221 12456799999999998753 2222333333333 2554 8
Q ss_pred EEEeecCCCCC--hhhHH----HHHHHH-Hhc-C---CeeEEEeeccCCCChH--------------HHHHHHHHHHH
Q 012726 247 ILLLNKCDLVP--AWATK----GWLRVL-SKE-Y---PSLAFHASINKSFGKG--------------SLLSVLRQFAR 299 (457)
Q Consensus 247 IlVLNKiDLvp--~~~~~----~wl~~l-~~~-~---p~~~f~iSa~~~~Gi~--------------~Li~~L~~~~~ 299 (457)
|+|+||+|+++ ..... .+..++ ... + ...++++||++|.|+. .|++.|..+.+
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99999999986 32222 222333 211 1 1357889999999997 78888877654
No 351
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.70 E-value=1.2e-05 Score=87.53 Aligned_cols=119 Identities=14% Similarity=0.151 Sum_probs=85.4
Q ss_pred EEEEeecCCCchHHHHHHHhCC-----CCcee------cCC------CCceeEEE---EEEcCCcEEEEecCCcccCCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTK-----NVCKV------API------PGETKVWQ---YITLTKRIFLIDCPGVVYQNKD 367 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~-----~~~~v------s~~------pg~T~~~~---~~~~~~~i~liDtPGi~~~~~~ 367 (457)
+|+++|+..+|||||..+|+-. ....+ .+. -|.|.... ..+-+..|.||||||-+....+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E 83 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE 83 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence 5899999999999999999621 10011 111 13332211 1112457899999999876543
Q ss_pred -----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC-CCCHHHHHHHHHHHcC
Q 012726 368 -----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD-WVDENDFLLQLCKSTG 426 (457)
Q Consensus 368 -----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~-~~~~~efL~~la~r~g 426 (457)
.-+|.++..|+..+.+......+...+.+.+.+.+...||||. ..+....++.+..+.|
T Consensus 84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~~~~i~~~l~ 148 (638)
T 3j25_A 84 VYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTVYQDIKEKLS 148 (638)
T ss_dssp HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHHHHHHHHTTC
T ss_pred HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHHHHHHHHHhC
Confidence 3568888888889999888888899999989899999999994 4567777888777665
No 352
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.70 E-value=9.8e-05 Score=76.67 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=39.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCce--e-cCCCCceeEEEEEEc-----CCcEEEEecCCcccC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCK--V-APIPGETKVWQYITL-----TKRIFLIDCPGVVYQ 364 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~--v-s~~pg~T~~~~~~~~-----~~~i~liDtPGi~~~ 364 (457)
.++++++|.+|+|||||+|+|.|..... + ...|+.+.....+.. ...+.++|+||+...
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~ 108 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQ 108 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhc
Confidence 3459999999999999999999975432 1 123566654322211 126799999999753
No 353
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.67 E-value=0.00016 Score=73.46 Aligned_cols=98 Identities=18% Similarity=0.072 Sum_probs=63.9
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHH---HHHHHHHh-cCCCcEEEEeecCCCCChhhH--HHHHHHH-Hhc-CC-
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHH---LERHLKEH-CKHKHMILLLNKCDLVPAWAT--KGWLRVL-SKE-YP- 273 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~---l~k~L~~~-~~~K~vIlVLNKiDLvp~~~~--~~wl~~l-~~~-~p- 273 (457)
++.+...+..+|+|++|+|+.++....... +.+.+... ..++|+|+|+||+|+.+.... ......+ ... .+
T Consensus 248 f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 248 FFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp HHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 455666789999999999997763111111 23344432 247899999999999864311 1111111 222 22
Q ss_pred eeEEEeeccCCCChHHHHHHHHHHHHh
Q 012726 274 SLAFHASINKSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 274 ~~~f~iSa~~~~Gi~~Li~~L~~~~~~ 300 (457)
..++++||+++.|+++|.+.|.+.+..
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 245788999999999999999887754
No 354
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.66 E-value=3.7e-05 Score=80.30 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
-.-|+|+|.+|+|||||+|.|++.
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHHHhhh
Confidence 345789999999999999999864
No 355
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.65 E-value=5.7e-05 Score=75.85 Aligned_cols=103 Identities=13% Similarity=0.037 Sum_probs=64.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+.+++||+|+.+... .++..+|++|+|+|+..+.... .+..... +.|.++|+||+
T Consensus 148 ~~~i~liDTpG~~~~~~-----------------~~~~~aD~vl~Vvd~~~~~~~~--~l~~~~~----~~p~ivv~NK~ 204 (341)
T 2p67_A 148 GYDVVIVETVGVGQSET-----------------EVARMVDCFISLQIAGGGDDLQ--GIKKGLM----EVADLIVINKD 204 (341)
T ss_dssp TCSEEEEEEECCTTHHH-----------------HHHTTCSEEEEEECC------C--CCCHHHH----HHCSEEEECCC
T ss_pred CCCEEEEeCCCccchHH-----------------HHHHhCCEEEEEEeCCccHHHH--HHHHhhh----cccCEEEEECC
Confidence 44567899999863211 1358999999999986442110 0111111 36789999999
Q ss_pred CCCChhhHHHHHHHHHh----cC------CeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 254 DLVPAWATKGWLRVLSK----EY------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 254 DLvp~~~~~~wl~~l~~----~~------p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
|+.+......+++.+.. .. ...++++||.++.|+++|++.|.+.++
T Consensus 205 Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 205 DGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 99875433333333322 11 235678999999999999999987653
No 356
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.64 E-value=6.4e-05 Score=71.85 Aligned_cols=124 Identities=13% Similarity=0.040 Sum_probs=72.6
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhc----CCCcEEEEe
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHC----KHKHMILLL 250 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~----~~K~vIlVL 250 (457)
....+.|+||+.+..... .....+.+.+.+......+|+||+|+|+.. ++..+..+.+.+.+.. .+.|+|+|.
T Consensus 70 ~~i~liDTPG~~~~~~~~--~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~ 146 (247)
T 3lxw_A 70 CHVEVVDTPDIFSSQVSK--TDPGCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFT 146 (247)
T ss_dssp EEEEEEECCSCSSTTHHH--HSTTSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEE
T ss_pred cEEEEEECCCCCCCCCCc--HHHHHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEE
Confidence 345678999985322110 011113444445555699999999999964 4444444555555421 257899999
Q ss_pred ecCCCCChhhHH-------HHHHHHHhcCC--eeEEEeec---cCCCChHHHHHHHHHHHHhh
Q 012726 251 NKCDLVPAWATK-------GWLRVLSKEYP--SLAFHASI---NKSFGKGSLLSVLRQFARLK 301 (457)
Q Consensus 251 NKiDLvp~~~~~-------~wl~~l~~~~p--~~~f~iSa---~~~~Gi~~Li~~L~~~~~~~ 301 (457)
||+||....... ..++.+.+.+. ...|..++ .++.|+.+|++.|.++++..
T Consensus 147 nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 147 RKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 999997532111 11222333332 33443333 23678999999999988754
No 357
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.64 E-value=6.3e-05 Score=67.64 Aligned_cols=90 Identities=11% Similarity=0.035 Sum_probs=59.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---HhcCCCcEEEEeecCCCCChhhHH----HHHHHHHhcCCe----eEE
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWATK----GWLRVLSKEYPS----LAF 277 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~~~K~vIlVLNKiDLvp~~~~~----~wl~~l~~~~p~----~~f 277 (457)
.+..+|++++|+|..++..+. ..+..++. ...++.|+|+|.||+|+....... ...+.+.+.+.. ..+
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEV-DAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYH 154 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHH-HTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEE
T ss_pred HccCCcEEEEEEeCCcchhHH-HHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheE
Confidence 356789999999997763221 12333333 223578999999999998754332 223334333332 267
Q ss_pred EeeccCCC-ChHHHHHHHHHHHH
Q 012726 278 HASINKSF-GKGSLLSVLRQFAR 299 (457)
Q Consensus 278 ~iSa~~~~-Gi~~Li~~L~~~~~ 299 (457)
.+||+++. |+.+|.+.|.+.+.
T Consensus 155 ~~Sa~~~~~~~~~l~~~i~~~~~ 177 (184)
T 2zej_A 155 FVNATEESDALAKLRKTIINESL 177 (184)
T ss_dssp ECCTTSCCHHHHHHHHHHHHHHH
T ss_pred EEecccCchhHHHHHHHHHHHHh
Confidence 88999996 99999988877665
No 358
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=97.62 E-value=0.00011 Score=84.54 Aligned_cols=95 Identities=18% Similarity=0.095 Sum_probs=63.2
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCc-EEEEeecCCCCChh-hH----HHHHHHHHhcC----
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKH-MILLLNKCDLVPAW-AT----KGWLRVLSKEY---- 272 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~-vIlVLNKiDLvp~~-~~----~~wl~~l~~~~---- 272 (457)
.......+..+|++|+|+|+.++...........+... +.| +|+|+||+|+++.. .. ....+.+....
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~ 450 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD 450 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence 45566678899999999999987655444444444432 677 78999999998532 11 12223333322
Q ss_pred CeeEEEeeccCC--------CChHHHHHHHHHHHH
Q 012726 273 PSLAFHASINKS--------FGKGSLLSVLRQFAR 299 (457)
Q Consensus 273 p~~~f~iSa~~~--------~Gi~~Li~~L~~~~~ 299 (457)
...++++||+++ .|+.+|++.|.++++
T Consensus 451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred ceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 145788999998 357788888877554
No 359
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.61 E-value=0.00011 Score=71.66 Aligned_cols=59 Identities=29% Similarity=0.430 Sum_probs=35.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCCceec-------CCCCceeE------EEEEEcCCcEEEEecCCcccC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNVCKVA-------PIPGETKV------WQYITLTKRIFLIDCPGVVYQ 364 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~~~vs-------~~pg~T~~------~~~~~~~~~i~liDtPGi~~~ 364 (457)
.++++++|.+|+|||||+|+|+|......+ +++.++.. .|...+...+.++|+||+...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~ 73 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ 73 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh
Confidence 368999999999999999999975432222 22332211 122223346899999999754
No 360
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.60 E-value=7.9e-05 Score=81.92 Aligned_cols=68 Identities=18% Similarity=0.146 Sum_probs=48.0
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+ +..+....+..+|.+|+|+|+.+........+...+.. .+.|+++|+||+|
T Consensus 77 ~~i~liDTPG~~d--------------f~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~--~~~p~ivviNKiD 140 (691)
T 1dar_A 77 HRINIIDTPGHVD--------------FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK--YKVPRIAFANKMD 140 (691)
T ss_dssp EEEEEECCCSSTT--------------CHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECTT
T ss_pred eEEEEEECcCccc--------------hHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH--cCCCEEEEEECCC
Confidence 4455788988743 22345667788999999999987765443344444443 3789999999999
Q ss_pred CCCh
Q 012726 255 LVPA 258 (457)
Q Consensus 255 Lvp~ 258 (457)
+...
T Consensus 141 ~~~~ 144 (691)
T 1dar_A 141 KTGA 144 (691)
T ss_dssp STTC
T ss_pred cccC
Confidence 9753
No 361
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.60 E-value=5.7e-05 Score=76.07 Aligned_cols=117 Identities=14% Similarity=0.120 Sum_probs=68.8
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhh-hccCEEEEEeeCCCCCCCCCHH-HHHHHHHhcCCCcEEEEeec
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVI-DSSDVVVQVLDARDPQGTRCHH-LERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I-~~sDvIL~VvDardp~~s~~~~-l~k~L~~~~~~K~vIlVLNK 252 (457)
.+..++|+||+........ .......+...+...+ ..+|+||+|+|+...+...+.. +.+.+.. .+.|+|+|+||
T Consensus 130 ~~l~lvDTPG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~--~~~~~i~V~NK 206 (353)
T 2x2e_A 130 LNLTLVDLPGMTKVPVGDQ-PPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDP--QGQRTIGVITK 206 (353)
T ss_dssp CSEEEEECCCBCSSCCTTC-CTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCT--TCTTEEEEEEC
T ss_pred CCcEEEECCCCCCCccCCC-chhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCc--CCCceEEEecc
Confidence 4566889999863211000 0000012223333444 5567888899987666544321 3333332 37899999999
Q ss_pred CCCCChhh-HHHHHHHHHhc-CC-----eeEEEeeccCCCChHHHHHHHHHH
Q 012726 253 CDLVPAWA-TKGWLRVLSKE-YP-----SLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 253 iDLvp~~~-~~~wl~~l~~~-~p-----~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
+|+++... ...+ +... ++ ..++.+||.++.|+.+|.+.+...
T Consensus 207 ~Dl~~~~~~~~~~---~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 207 LDLMDEGTDARDV---LENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp GGGSCTTCCCHHH---HTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred ccccCcchhHHHH---HhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 99986532 2222 2221 21 345678999999999999888753
No 362
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.60 E-value=3.6e-05 Score=69.52 Aligned_cols=89 Identities=18% Similarity=0.095 Sum_probs=57.3
Q ss_pred HhhhccCEEEEEeeCCCCCCCCCHHHHHHHHH---h----cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEe
Q 012726 208 KVIDSSDVVVQVLDARDPQGTRCHHLERHLKE---H----CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHA 279 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~---~----~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~i 279 (457)
..+..+|++|+|+|+.++.+. ..+..++.. . ..+.|+|+|+||+|+.... ....-...+........+.+
T Consensus 87 ~~~~~~~~~ilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~ 164 (187)
T 3c5c_A 87 RYLNWAHAFLVVYSVDSRQSF--DSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEV 164 (187)
T ss_dssp HHHTTCSEEEEEEETTCHHHH--HHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEC
T ss_pred HHHhhCCEEEEEEECCCHHHH--HHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEE
Confidence 356789999999999765321 223333322 1 1578999999999996421 11111222222233467788
Q ss_pred ec-cCCCChHHHHHHHHHHH
Q 012726 280 SI-NKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 280 Sa-~~~~Gi~~Li~~L~~~~ 298 (457)
|| +++.|+++|++.|.+.+
T Consensus 165 Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 165 SACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp CSSSCSHHHHHHHHHHHHHH
T ss_pred eecCccccHHHHHHHHHHHH
Confidence 99 89999999998887654
No 363
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=97.60 E-value=3.7e-05 Score=83.39 Aligned_cols=101 Identities=16% Similarity=0.059 Sum_probs=60.4
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCC-------CCCCCHHHHHHHHHhcCCCcEE
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDP-------QGTRCHHLERHLKEHCKHKHMI 247 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp-------~~s~~~~l~k~L~~~~~~K~vI 247 (457)
.+..+.|+||..+ +.......+..+|++|+|+||.++ ...........+.. ...+++|
T Consensus 245 ~~~~iiDTPG~e~--------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi~~iI 309 (611)
T 3izq_1 245 ANFTIVDAPGHRD--------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGIHNLI 309 (611)
T ss_dssp CEEEEEECCSSSC--------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTCCEEE
T ss_pred ceEEEEECCCCcc--------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCCCeEE
Confidence 3455778888642 334455678899999999999763 11111222222222 1235699
Q ss_pred EEeecCCCCCh--hhH----HHHHHHHHhc-C---CeeEEEeeccCCCChHHH
Q 012726 248 LLLNKCDLVPA--WAT----KGWLRVLSKE-Y---PSLAFHASINKSFGKGSL 290 (457)
Q Consensus 248 lVLNKiDLvp~--~~~----~~wl~~l~~~-~---p~~~f~iSa~~~~Gi~~L 290 (457)
+|+||+|+++. ... .....++... + ...++++||.+|.|+.+|
T Consensus 310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 99999999872 111 1222222222 1 246788999999999754
No 364
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.57 E-value=6.3e-05 Score=79.93 Aligned_cols=89 Identities=19% Similarity=0.219 Sum_probs=57.2
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhh-HHHHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWA-TKGWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~-~~~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
.+..+|++|+|+|+..+ .....+...+....++.|+|+|+||+|+.+... .....+.+.......+|.+||.++.|+
T Consensus 118 ~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi 195 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGV 195 (535)
T ss_dssp HHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----C
T ss_pred HccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCH
Confidence 35679999999999764 233445555555445799999999999976432 122222222233344788999999999
Q ss_pred HHHHHHHHHHHH
Q 012726 288 GSLLSVLRQFAR 299 (457)
Q Consensus 288 ~~Li~~L~~~~~ 299 (457)
++|.+.|.+.+.
T Consensus 196 ~eL~~~l~~~~~ 207 (535)
T 3dpu_A 196 ESIAKSLKSAVL 207 (535)
T ss_dssp TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 365
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.57 E-value=0.0001 Score=81.17 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=83.6
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCC-----cee------cC------CCCceeEEEEEEc----------CCcEEEEecC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNV-----CKV------AP------IPGETKVWQYITL----------TKRIFLIDCP 359 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~-----~~v------s~------~pg~T~~~~~~~~----------~~~i~liDtP 359 (457)
.+|++||+...|||||.-+|+-..- ..+ .+ .-|.|.....+.+ +-.|.|||||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 4799999999999999999973110 011 11 1133321111111 1258999999
Q ss_pred CcccCCCC-----CccceEEEeccccCCcccHHHHHHHHHHhcCcceehhhcCCCC-CCCHHHHHHHHHHHcCC
Q 012726 360 GVVYQNKD-----SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKEHLKRAYKIKD-WVDENDFLLQLCKSTGK 427 (457)
Q Consensus 360 Gi~~~~~~-----~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~~l~~~y~i~~-~~~~~efL~~la~r~g~ 427 (457)
|-+....+ .-+|-++..|+.++.+......+...+.+.+.+.+...||||. ..+....++.+-.+.|.
T Consensus 94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~~~~ei~~~l~~ 167 (709)
T 4fn5_A 94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLRVVEQIKKRLGH 167 (709)
T ss_dssp SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHHHHHHHHHHHCS
T ss_pred CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHHHHHHhhhhccc
Confidence 99876544 2367788878889999888888888888888899999999994 56777888888777663
No 366
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.56 E-value=0.00011 Score=74.11 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=61.7
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+.+++|++|+... . ..+.+.+|++++|+|+..+.. ...+...+ -..|.++|+||+
T Consensus 166 ~~~~iliDT~Gi~~~-----------~------~~l~~~~d~vl~V~d~~~~~~--~~~i~~~i----l~~~~ivVlNK~ 222 (349)
T 2www_A 166 GYDIILIETVGVGQS-----------E------FAVADMVDMFVLLLPPAGGDE--LQGIKRGI----IEMADLVAVTKS 222 (349)
T ss_dssp TCSEEEEECCCC--C-----------H------HHHHTTCSEEEEEECCC------------------CCSCSEEEECCC
T ss_pred CCCEEEEECCCcchh-----------h------hhHHhhCCEEEEEEcCCcchh--HHHhHHHH----HhcCCEEEEeee
Confidence 345567899997521 0 123578999999999875431 11121111 246889999999
Q ss_pred CCCChhhHH----HHHHHHHhcC------CeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 254 DLVPAWATK----GWLRVLSKEY------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 254 DLvp~~~~~----~wl~~l~~~~------p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
|+.+..... .+...+.... ...++.+||.++.|+++|.+.|.++++
T Consensus 223 Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 223 DGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 998643222 2222222111 134577899999999999999988763
No 367
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=97.56 E-value=5.1e-05 Score=72.78 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.5
Q ss_pred ccceEEEEeecC---------CCchHHHHHHHhCC
Q 012726 304 KQAISVGFVGYP---------NVGKSSVINTLRTK 329 (457)
Q Consensus 304 ~~~i~v~vvG~p---------NvGKSSliN~L~~~ 329 (457)
...++|+++|.+ |||||||+|.|++.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~ 51 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRP 51 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCC
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhc
Confidence 346899999999 99999999999984
No 368
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=97.53 E-value=0.00019 Score=75.20 Aligned_cols=98 Identities=12% Similarity=0.094 Sum_probs=54.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCC-------CCCHHHHHHHHHhcCCCc-EE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQG-------TRCHHLERHLKEHCKHKH-MI 247 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~-------s~~~~l~k~L~~~~~~K~-vI 247 (457)
...+.|+||..+. .......+..+|++|+|+|+.+... .........+.. .+.| +|
T Consensus 122 ~~~iiDtPGh~~f--------------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~ii 185 (467)
T 1r5b_A 122 RFSLLDAPGHKGY--------------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLV 185 (467)
T ss_dssp EEEECCCCC-------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEE
T ss_pred EEEEEECCCcHHH--------------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEE
Confidence 3456888886432 2334556789999999999987631 111222222222 3566 89
Q ss_pred EEeecCCCCC----hhh----HHHHHHHHHhc--C----CeeEEEeeccCCCChHH
Q 012726 248 LLLNKCDLVP----AWA----TKGWLRVLSKE--Y----PSLAFHASINKSFGKGS 289 (457)
Q Consensus 248 lVLNKiDLvp----~~~----~~~wl~~l~~~--~----p~~~f~iSa~~~~Gi~~ 289 (457)
+|+||+|+.+ .+. .....+++... + ...++++||+++.|+.+
T Consensus 186 vviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~ 241 (467)
T 1r5b_A 186 VVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKD 241 (467)
T ss_dssp EEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSS
T ss_pred EEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccc
Confidence 9999999964 111 12233333332 2 24578899999999875
No 369
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.52 E-value=5.6e-05 Score=83.13 Aligned_cols=69 Identities=22% Similarity=0.207 Sum_probs=49.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
..+..++|+||..+. ..++..++..+|.+|+|+|+.++.......+.+.+.. .+.|+|+|+||+
T Consensus 74 ~~~i~liDTPG~~df--------------~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~--~~~p~ilviNK~ 137 (693)
T 2xex_A 74 GHRVNIIDTPGHVDF--------------TVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATT--YGVPRIVFVNKM 137 (693)
T ss_dssp TEEEEEECCCCCSSC--------------CHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEECT
T ss_pred CeeEEEEECcCCcch--------------HHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 345567899998532 1234567788999999999988765444444455544 378999999999
Q ss_pred CCCCh
Q 012726 254 DLVPA 258 (457)
Q Consensus 254 DLvp~ 258 (457)
|+...
T Consensus 138 Dl~~~ 142 (693)
T 2xex_A 138 DKLGA 142 (693)
T ss_dssp TSTTC
T ss_pred Ccccc
Confidence 99754
No 370
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=97.51 E-value=1.3e-05 Score=73.04 Aligned_cols=88 Identities=14% Similarity=0.168 Sum_probs=49.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh----cCCCcEEEEeecCCCCChhhH-HHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLKEH----CKHKHMILLLNKCDLVPAWAT-KGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~----~~~K~vIlVLNKiDLvp~~~~-~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+..+|++|+|+|+.++.+ ...+..++... ..+.|+|+|+||+||.+.... ......+...+....+.+||++
T Consensus 102 ~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~ 179 (199)
T 3l0i_B 102 YYRGAHGIIVVYDVTDQES--FNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKN 179 (199)
T ss_dssp --CCCSEEEECC-CCCSHH--HHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC--
T ss_pred HhhcCCEEEEEEECCCHHH--HHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCC
Confidence 5678999999999987542 12334444321 236899999999999754211 0111223333334567789999
Q ss_pred CCChHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFA 298 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~ 298 (457)
+.|+++|++.|.+.+
T Consensus 180 g~gv~~l~~~l~~~l 194 (199)
T 3l0i_B 180 ATNVEQSFMTMAAEI 194 (199)
T ss_dssp -HHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999988876543
No 371
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=97.49 E-value=0.00013 Score=68.49 Aligned_cols=88 Identities=16% Similarity=0.122 Sum_probs=58.7
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---H-hcCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---E-HCKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINK 283 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~-~~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~ 283 (457)
.+..+|++++|.|..++.+... +.+++. . ..++.|+|||.||+||.... +...-.+.+.+.+....|.+||++
T Consensus 82 ~~~~a~~~ilv~di~~~~Sf~~--i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAkt 159 (216)
T 4dkx_A 82 YIRDSAAAVVVYDITNVNSFQQ--TTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKA 159 (216)
T ss_dssp HHTTCSEEEEEEETTCHHHHHT--HHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTT
T ss_pred HhccccEEEEEeecchhHHHHH--HHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCC
Confidence 5678999999999977644322 233332 2 23578999999999996432 112222333333345567789999
Q ss_pred CCChHHHHHHHHHHH
Q 012726 284 SFGKGSLLSVLRQFA 298 (457)
Q Consensus 284 ~~Gi~~Li~~L~~~~ 298 (457)
+.|++++.+.|.+.+
T Consensus 160 g~nV~e~F~~i~~~i 174 (216)
T 4dkx_A 160 GYNVKQLFRRVAAAL 174 (216)
T ss_dssp TBSHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHH
Confidence 999999998886554
No 372
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=97.48 E-value=0.00011 Score=68.69 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=56.5
Q ss_pred hhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 210 I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
...+|.+|+|.|..++.+... ..+...+... ..+.|+|+|.||+||.... +.......+...+....|.+||+++.
T Consensus 109 ~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~ 188 (211)
T 2g3y_A 109 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQH 188 (211)
T ss_dssp CCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred HhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 466899999999876532111 1122223321 2478999999999996432 11111122222334456788999999
Q ss_pred ChHHHHHHHHHHHHh
Q 012726 286 GKGSLLSVLRQFARL 300 (457)
Q Consensus 286 Gi~~Li~~L~~~~~~ 300 (457)
|+++|++.|.+.+..
T Consensus 189 ~v~elf~~l~~~i~~ 203 (211)
T 2g3y_A 189 NVKELFEGIVRQVRL 203 (211)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998776543
No 373
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=97.47 E-value=3.9e-05 Score=81.26 Aligned_cols=105 Identities=22% Similarity=0.217 Sum_probs=68.0
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||..+..... ...+..+|++|+|+|+.++...........+.. .+.|+|+++||+|+
T Consensus 52 ~i~~iDTPGhe~f~~~~--------------~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~--~~vPiIVviNKiDl 115 (501)
T 1zo1_I 52 MITFLDTPGHAAFTSMR--------------ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKA--AQVPVVVAVNKIDK 115 (501)
T ss_dssp CCCEECCCTTTCCTTSB--------------CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHH--TTCCEEEEEECSSS
T ss_pred EEEEEECCCcHHHHHHH--------------HHHHhhCCEEEEEeecccCccHHHHHHHHHHHh--cCceEEEEEEeccc
Confidence 44578999965332211 124678999999999988665555554445443 47899999999999
Q ss_pred CChh--hHHHHHH---HHHhcC--CeeEEEeeccCCCChHHHHHHHHH
Q 012726 256 VPAW--ATKGWLR---VLSKEY--PSLAFHASINKSFGKGSLLSVLRQ 296 (457)
Q Consensus 256 vp~~--~~~~wl~---~l~~~~--p~~~f~iSa~~~~Gi~~Li~~L~~ 296 (457)
.... .....+. .+.+.+ ...++++||+++.|+++|++.|..
T Consensus 116 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 116 PEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp STTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred cccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence 6421 1110000 001111 146788999999999999998864
No 374
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.47 E-value=0.00018 Score=76.18 Aligned_cols=112 Identities=16% Similarity=0.187 Sum_probs=62.8
Q ss_pred cceEEEEeecCCCchHHHHHHHh------CCCCceecCC---CCc--------ee-EEEEEE------------------
Q 012726 305 QAISVGFVGYPNVGKSSVINTLR------TKNVCKVAPI---PGE--------TK-VWQYIT------------------ 348 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~------~~~~~~vs~~---pg~--------T~-~~~~~~------------------ 348 (457)
....|+++|.|||||||++|.|. +.+++.++.- |+. ++ ....+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998 7776555431 111 00 000000
Q ss_pred --cCCcEEEEecCCcccCCCC-----------CccceEEEeccccCCcccHHHHHHHHHHhcCcc-eehhhcCCCCCCCH
Q 012726 349 --LTKRIFLIDCPGVVYQNKD-----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVKKE-HLKRAYKIKDWVDE 414 (457)
Q Consensus 349 --~~~~i~liDtPGi~~~~~~-----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~~~-~l~~~y~i~~~~~~ 414 (457)
-+..+.||||||....... ...|.++..+...... +....+ ..+... .+ ...+++++|.....
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~~~~~a-~~~~~~-~~i~gvVlNK~D~~~~~ 256 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-ACEAQA-KAFKDK-VDVASVIVTKLDGHAKG 256 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-THHHHH-HHHHHH-HCCCCEEEECTTSCCCC
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-cHHHHH-HHHHhh-cCceEEEEeCCccccch
Confidence 1346899999999854211 1346666655554443 222222 223322 33 46778898865443
Q ss_pred HHHHH
Q 012726 415 NDFLL 419 (457)
Q Consensus 415 ~efL~ 419 (457)
...++
T Consensus 257 g~~l~ 261 (504)
T 2j37_W 257 GGALS 261 (504)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 33343
No 375
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=97.46 E-value=3.6e-05 Score=80.49 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=58.4
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCC-------CCHHHHHHHHHhcCCC-cEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGT-------RCHHLERHLKEHCKHK-HMI 247 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s-------~~~~l~k~L~~~~~~K-~vI 247 (457)
+..+.|+||.. ++...+...+..+|++|+|+||.++... ........+.. .+. ++|
T Consensus 86 ~~~iiDtPGh~--------------~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~ii 149 (458)
T 1f60_A 86 QVTVIDAPGHR--------------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLI 149 (458)
T ss_dssp EEEEEECCCCT--------------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEE
T ss_pred eEEEEECCCcH--------------HHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEE
Confidence 44567888853 2344566778999999999999865311 11111222222 245 489
Q ss_pred EEeecCCCCC--hhhHH----HHHHHHHhc-CC---eeEEEeeccCCCChH
Q 012726 248 LLLNKCDLVP--AWATK----GWLRVLSKE-YP---SLAFHASINKSFGKG 288 (457)
Q Consensus 248 lVLNKiDLvp--~~~~~----~wl~~l~~~-~p---~~~f~iSa~~~~Gi~ 288 (457)
+|+||+|+++ ..... ...+++... +. ..++++||+++.|+.
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred EEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 9999999984 32222 222233322 21 457889999999875
No 376
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.46 E-value=0.00021 Score=76.56 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=52.7
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
++....++||||..+. ..++.+++.-+|-+|.|+||..........+.+...+ .+.|.|+++||
T Consensus 98 ~~~~iNlIDTPGHvDF--------------~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~--~~lp~i~fINK 161 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDF--------------SEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM--RATPVMTFVNK 161 (548)
T ss_dssp TTEEEEEECCCCGGGC--------------SHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred CCEEEEEEeCCCcHHH--------------HHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH--hCCceEEEEec
Confidence 3445567899998643 3467889999999999999987776555556666554 48999999999
Q ss_pred CCCCC
Q 012726 253 CDLVP 257 (457)
Q Consensus 253 iDLvp 257 (457)
+|...
T Consensus 162 ~Dr~~ 166 (548)
T 3vqt_A 162 MDREA 166 (548)
T ss_dssp TTSCC
T ss_pred ccchh
Confidence 99853
No 377
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=97.45 E-value=9.7e-05 Score=78.75 Aligned_cols=68 Identities=18% Similarity=0.261 Sum_probs=46.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+. ..++...+..+|.+|+|+|+.++.......+.+.+.. .+.|+|+|+||+|
T Consensus 82 ~~i~liDTPG~~df--------------~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~--~~ipiivviNK~D 145 (529)
T 2h5e_A 82 CLVNLLDTPGHEDF--------------SEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL--RDTPILTFMNKLD 145 (529)
T ss_dssp EEEEEECCCCSTTC--------------CHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT--TTCCEEEEEECTT
T ss_pred eEEEEEECCCChhH--------------HHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH--cCCCEEEEEcCcC
Confidence 34457889887432 1345567899999999999988754332333333322 4789999999999
Q ss_pred CCCh
Q 012726 255 LVPA 258 (457)
Q Consensus 255 Lvp~ 258 (457)
+...
T Consensus 146 l~~~ 149 (529)
T 2h5e_A 146 RDIR 149 (529)
T ss_dssp SCCS
T ss_pred Cccc
Confidence 9753
No 378
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.45 E-value=0.00074 Score=61.44 Aligned_cols=93 Identities=17% Similarity=0.090 Sum_probs=63.9
Q ss_pred HHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhH----HHHHHHHHhcC-CeeEEEe
Q 012726 205 ELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWAT----KGWLRVLSKEY-PSLAFHA 279 (457)
Q Consensus 205 el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~----~~wl~~l~~~~-p~~~f~i 279 (457)
........+|.+++|+|+.++.......+.+++.. .+.|.++|.||+|+++.... ....+.+.+.. ....+++
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF 178 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence 34444467899999999988765433345555543 37899999999999875321 22222333222 2456788
Q ss_pred eccCCCChHHHHHHHHHHHH
Q 012726 280 SINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 280 Sa~~~~Gi~~Li~~L~~~~~ 299 (457)
|++.+.|+++|++.|.++.+
T Consensus 179 Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 179 SSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp BTTTTBSHHHHHHHHHHHHC
T ss_pred eecCCCCHHHHHHHHHHHHh
Confidence 99999999999999988763
No 379
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.41 E-value=0.00023 Score=77.93 Aligned_cols=51 Identities=12% Similarity=0.114 Sum_probs=37.4
Q ss_pred HHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCC
Q 012726 204 GELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLV 256 (457)
Q Consensus 204 ~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLv 256 (457)
.++..++..+|.+++|+|+.+........+.+.+.. .+.|+|+|+||+|+.
T Consensus 89 ~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 89 GEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH--TTCCEEEEEECGGGC
T ss_pred HHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH--ccCCEEEEecCCchh
Confidence 445667788999999999877654333344444443 378999999999987
No 380
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.39 E-value=7.1e-05 Score=71.08 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=28.0
Q ss_pred cceEEEEeecCCCchHHHHHHHh-----CCCCceecCCCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLR-----TKNVCKVAPIPG 339 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~-----~~~~~~vs~~pg 339 (457)
....+.++|.+||||||+++.|. +.+++.+..-|+
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~ 52 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTG 52 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45678899999999999999998 777766654444
No 381
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.35 E-value=0.00037 Score=76.72 Aligned_cols=67 Identities=18% Similarity=0.104 Sum_probs=46.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
....+.|+||..+ +..++..++..+|.+|+|+|+.+........+.+.+.. .+.|+++|+||+|
T Consensus 82 ~~i~liDTPG~~d--------------f~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~--~~ip~ilviNKiD 145 (704)
T 2rdo_7 82 HRINIIDTPGHVD--------------FTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK--YKVPRIAFVNKMD 145 (704)
T ss_pred eeEEEEeCCCccc--------------hHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH--cCCCEEEEEeCCC
Confidence 3445788888643 22345567788999999999987654333333344332 3789999999999
Q ss_pred CCC
Q 012726 255 LVP 257 (457)
Q Consensus 255 Lvp 257 (457)
+..
T Consensus 146 ~~~ 148 (704)
T 2rdo_7 146 RMG 148 (704)
T ss_pred ccc
Confidence 864
No 382
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=97.32 E-value=0.00033 Score=63.70 Aligned_cols=90 Identities=18% Similarity=0.154 Sum_probs=56.3
Q ss_pred hhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh--cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 210 IDSSDVVVQVLDARDPQGTRC-HHLERHLKEH--CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 210 I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~--~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
...+|.+++|.|..++.+... ..+...+... ..+.|+|+|.||+||.... ........+...+....+.+||+++.
T Consensus 78 ~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 78 MQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQH 157 (192)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTB
T ss_pred cccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCC
Confidence 345789999999876532111 1122223322 2468999999999996432 11111222333344456788999999
Q ss_pred ChHHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFAR 299 (457)
Q Consensus 286 Gi~~Li~~L~~~~~ 299 (457)
|+++|++.|.+.+.
T Consensus 158 ~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 158 NVKELFEGIVRQVR 171 (192)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998877654
No 383
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.32 E-value=4.3e-05 Score=78.59 Aligned_cols=48 Identities=19% Similarity=0.145 Sum_probs=32.6
Q ss_pred CCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHH
Q 012726 243 HKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLL 291 (457)
Q Consensus 243 ~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li 291 (457)
.+|+|+|+||+|+.....+..+.+.+... +..++++||..+.|+.+|+
T Consensus 214 ~kP~i~v~NK~D~~~~~~l~~l~~~~~~~-~~~vv~iSA~~e~~l~~L~ 261 (397)
T 1wxq_A 214 NKPMVIAANKADAASDEQIKRLVREEEKR-GYIVIPTSAAAELTLRKAA 261 (397)
T ss_dssp HSCEEEEEECGGGSCHHHHHHHHHHHHHT-TCEEEEECHHHHHHHHSCS
T ss_pred CCCEEEEEeCccccchHHHHHHHHHHhhc-CCcEEEEeccchhhHHHHH
Confidence 49999999999998543334444433322 3567888999888876653
No 384
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.27 E-value=0.00066 Score=62.71 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
...+|+++|.+|||||||+|.|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999853
No 385
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.25 E-value=0.0007 Score=66.75 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=63.9
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCH-HHHHHHHH---hcCCCcEEEEe
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCH-HLERHLKE---HCKHKHMILLL 250 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~-~l~k~L~~---~~~~K~vIlVL 250 (457)
....+.|++|....... .........+..+|++|+|+|+.++.+..+. .+.+++.. ..++.|+++|+
T Consensus 52 ~~l~i~Dt~G~~~~~~~---------~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~ 122 (307)
T 3r7w_A 52 MTLNLWDCGGQDVFMEN---------YFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLL 122 (307)
T ss_dssp EEEEEEEECCSHHHHHH---------HHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEEEECCCcHHHhhh---------hhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 33446788886543110 0011233456789999999999876432221 11222322 24589999999
Q ss_pred ecCCCCChh-------hHHHHHHHHHhcCC---eeEEEeeccCCCChHHHHHHH
Q 012726 251 NKCDLVPAW-------ATKGWLRVLSKEYP---SLAFHASINKSFGKGSLLSVL 294 (457)
Q Consensus 251 NKiDLvp~~-------~~~~wl~~l~~~~p---~~~f~iSa~~~~Gi~~Li~~L 294 (457)
||+|+.+.. ......+.+.+.+. ...+.+||.+ .|+.+++..+
T Consensus 123 NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~i 175 (307)
T 3r7w_A 123 HKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQI 175 (307)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHH
T ss_pred ecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHH
Confidence 999998732 22233444444443 5678889988 5555544443
No 386
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.24 E-value=0.00021 Score=70.57 Aligned_cols=58 Identities=26% Similarity=0.343 Sum_probs=30.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCCCceecCCCC------ceeEE-------EEEEcCCcEEEEecCCcc
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPG------ETKVW-------QYITLTKRIFLIDCPGVV 362 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg------~T~~~-------~~~~~~~~i~liDtPGi~ 362 (457)
-.++|+++|.+|||||||+|+|.+......+.++. .|... +.......+.++||||+.
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~ 87 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 87 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC---
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhh
Confidence 35889999999999999999998863322221210 11111 111112368999999984
No 387
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.21 E-value=0.00045 Score=64.96 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=61.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh---cCCCcEEEEeec
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH---CKHKHMILLLNK 252 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~---~~~K~vIlVLNK 252 (457)
...+.|+||+...... .......+.+.+......+|++|+|+|+.. +........+.+... ...+|+++|+||
T Consensus 79 ~i~liDTpG~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~-~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 79 ELVVVDTPGIFDTEVP---NAETSKEIIRCILLTSPGPHALLLVVPLGR-YTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp EEEEEECCSCC--------CHHHHHHHHHHHHHTTTCCSEEEEEEETTC-CSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred eEEEEECCCccCCCCC---HHHHHHHHHHHHHhcCCCCcEEEEEeeCCC-CCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 3457899997532210 000113455555566678899999999864 333333333333221 124699999999
Q ss_pred CCCCChhhHHHHH-------HHHHhcCC--eeEEEeecc---CCCChHHHHHHHHHHHHh
Q 012726 253 CDLVPAWATKGWL-------RVLSKEYP--SLAFHASIN---KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 253 iDLvp~~~~~~wl-------~~l~~~~p--~~~f~iSa~---~~~Gi~~Li~~L~~~~~~ 300 (457)
+|+++......++ +.+.+.+. ...|..++. +..++.+|++.+..+...
T Consensus 155 ~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 155 KDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp GGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 9998654433222 22222222 333322221 235777888888777654
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.21 E-value=0.00035 Score=64.39 Aligned_cols=81 Identities=14% Similarity=0.157 Sum_probs=54.6
Q ss_pred ccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChh--hHHHHHHHHHhcCC-eeEEEeeccCCCChH
Q 012726 212 SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEYP-SLAFHASINKSFGKG 288 (457)
Q Consensus 212 ~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~--~~~~wl~~l~~~~p-~~~f~iSa~~~~Gi~ 288 (457)
..+.+++|+|+..+.. ....+.... +.|.++|+||+|+.+.. ......+.+....+ ..++.+||.++.|++
T Consensus 129 ~~~~~i~vvd~~~~~~----~~~~~~~~~--~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~ 202 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD----VVEKHPEIF--RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFE 202 (221)
T ss_dssp SCSEEEEEEEGGGCTT----HHHHCHHHH--HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHH
T ss_pred ccCcEEEEEeCCCcch----hhhhhhhhh--hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHH
Confidence 3578999999976531 222222221 57899999999996531 23344444444333 567889999999999
Q ss_pred HHHHHHHHHH
Q 012726 289 SLLSVLRQFA 298 (457)
Q Consensus 289 ~Li~~L~~~~ 298 (457)
+|++.|.+.+
T Consensus 203 ~l~~~l~~~~ 212 (221)
T 2wsm_A 203 EWIDFLRGIL 212 (221)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 389
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.16 E-value=0.00025 Score=77.16 Aligned_cols=68 Identities=21% Similarity=0.311 Sum_probs=53.3
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
++....++||||..+. ..++..++.-+|.+|.|+||..........+.+.+.+. +.|.|+++||
T Consensus 65 ~~~~iNlIDTPGH~DF--------------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~--~lp~i~~INK 128 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDF--------------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM--GIPTIFFINK 128 (638)
T ss_dssp SSCBCCCEECCCSSST--------------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH--TCSCEECCEE
T ss_pred CCEEEEEEECCCcHHH--------------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc--CCCeEEEEec
Confidence 3445667899987543 35677889999999999999888776666677776654 7899999999
Q ss_pred CCCC
Q 012726 253 CDLV 256 (457)
Q Consensus 253 iDLv 256 (457)
+|..
T Consensus 129 mDr~ 132 (638)
T 3j25_A 129 IDQN 132 (638)
T ss_dssp CCSS
T ss_pred cccc
Confidence 9975
No 390
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=97.14 E-value=0.00014 Score=77.78 Aligned_cols=88 Identities=15% Similarity=0.145 Sum_probs=52.8
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCC-CCCCCHHHHHHHHHhcCCCcEEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDP-QGTRCHHLERHLKEHCKHKHMILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp-~~s~~~~l~k~L~~~~~~K~vIlVLNKiD 254 (457)
+.+++||||+.......+... -.+...+...+..+|+||+|+|+..+ .......+.+.+.. .+.|+++|+||+|
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~---~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~pvilVlNK~D 229 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRG---YDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDKIRVVLNKAD 229 (550)
T ss_dssp HCEEEECCCBCC-------CC---SCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGGEEEEEECGG
T ss_pred CEEEEECcCCCCcchhHHHHH---hhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCCEEEEEECCC
Confidence 456899999864221111100 01334556678899999999999764 22222233333332 2578999999999
Q ss_pred CCChhhHHHHHHHH
Q 012726 255 LVPAWATKGWLRVL 268 (457)
Q Consensus 255 Lvp~~~~~~wl~~l 268 (457)
+++...+......+
T Consensus 230 l~~~~el~~~~~~l 243 (550)
T 2qpt_A 230 MVETQQLMRVYGAL 243 (550)
T ss_dssp GSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHh
Confidence 99876665555544
No 391
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.09 E-value=0.0023 Score=64.18 Aligned_cols=106 Identities=10% Similarity=0.028 Sum_probs=60.6
Q ss_pred EEEEeecCCCchHHHHHHHhCCCCceecCCCCceeEEE--EEEcCCcEEEEecCCcccCCC--------CCccceEEEec
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQ--YITLTKRIFLIDCPGVVYQNK--------DSETDIVLKGV 377 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~~~~vs~~pg~T~~~~--~~~~~~~i~liDtPGi~~~~~--------~~e~dlvL~gv 377 (457)
+|.++|-.|||||||++.+.+..........+.|.... .+...-++.|+||||--.... -..++.++.++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 47899999999999999887654322111122232211 122224789999999653211 14567777755
Q ss_pred cccCCcccHHHHHHHHHHhc-----CcceehhhcCCCCCCC
Q 012726 378 VRVTNLEDAAEHIGEVLKRV-----KKEHLKRAYKIKDWVD 413 (457)
Q Consensus 378 v~~~~l~~~~~~i~~~L~~~-----~~~~l~~~y~i~~~~~ 413 (457)
+..+.+.+....+..++..+ +.+.+...+|.|-..+
T Consensus 81 Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 81 DSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 44333333334443444322 2356778899886544
No 392
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.07 E-value=0.00084 Score=67.32 Aligned_cols=104 Identities=14% Similarity=0.030 Sum_probs=62.8
Q ss_pred cccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeec
Q 012726 173 ASTSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNK 252 (457)
Q Consensus 173 ~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNK 252 (457)
...+.+++||+|+.+. . ..+.+.+|++++|+|+..+.. ...+.+.+. ..+.++|+||
T Consensus 146 ~~~~~iliDT~Gi~~~-----------~------~~v~~~~d~vl~v~d~~~~~~--~~~i~~~i~----~~~~ivvlNK 202 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS-----------E------TAVADLTDFFLVLMLPGAGDE--LQGIKKGIF----ELADMIAVNK 202 (337)
T ss_dssp TTCCEEEEEECSSSSC-----------H------HHHHTTSSEEEEEECSCC--------CCTTHH----HHCSEEEEEC
T ss_pred CCCCEEEEECCCCCcc-----------h------hhHHhhCCEEEEEEcCCCccc--HHHHHHHHh----ccccEEEEEc
Confidence 4456778999998631 1 123578999999999753211 011111111 2456888999
Q ss_pred CCCCCh-hhHHHHHHHHHh----cC------CeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 253 CDLVPA-WATKGWLRVLSK----EY------PSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 253 iDLvp~-~~~~~wl~~l~~----~~------p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+|+.+. .......+.+.. .. ...++.+||.++.|+++|.+.|.++.+
T Consensus 203 ~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 203 ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 998753 322222333321 11 123566899999999999999988754
No 393
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.91 E-value=0.0032 Score=65.06 Aligned_cols=92 Identities=25% Similarity=0.289 Sum_probs=61.7
Q ss_pred HHhhhccCEEEEEeeCC-CCCCCCCHHHHHHHHHh---cCCCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeecc
Q 012726 207 YKVIDSSDVVVQVLDAR-DPQGTRCHHLERHLKEH---CKHKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASIN 282 (457)
Q Consensus 207 ~k~I~~sDvIL~VvDar-dp~~s~~~~l~k~L~~~---~~~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~ 282 (457)
.+.++.+|.+|+|+|+. +++... ..+.+.+... ..++|.|+|+||+|+........+.+.+... ...++.+||.
T Consensus 230 l~~~era~~lL~vvDls~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~-g~~vi~iSA~ 307 (416)
T 1udx_A 230 LRHIARTRVLLYVLDAADEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALARE-GLAVLPVSAL 307 (416)
T ss_dssp HHHHTSSSEEEEEEETTSCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEECCTT
T ss_pred HHHHHHHHhhhEEeCCccCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhc-CCeEEEEECC
Confidence 34578899999999995 332111 1122222211 1258999999999998764444455555432 3346778999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 012726 283 KSFGKGSLLSVLRQFARL 300 (457)
Q Consensus 283 ~~~Gi~~Li~~L~~~~~~ 300 (457)
++.|+++|++.|.+.+..
T Consensus 308 ~g~gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 308 TGAGLPALKEALHALVRS 325 (416)
T ss_dssp TCTTHHHHHHHHHHHHHT
T ss_pred CccCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 394
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.86 E-value=0.0016 Score=67.61 Aligned_cols=118 Identities=16% Similarity=0.095 Sum_probs=63.0
Q ss_pred ceEEEEeecCCCchHHHHHHHhC------CCCceec------------------------CCCCceeEEEEE-------E
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT------KNVCKVA------------------------PIPGETKVWQYI-------T 348 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~------~~~~~vs------------------------~~pg~T~~~~~~-------~ 348 (457)
+..|+++|.+||||||+++.|.. .+++-++ +.+++|++...+ .
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999975 3332222 111133321100 0
Q ss_pred cCCcEEEEecCCcccCCCC-----------CccceEEEeccccCCcccHHHHHHHHHHhcC-cceehhhcCCCCCCCHHH
Q 012726 349 LTKRIFLIDCPGVVYQNKD-----------SETDIVLKGVVRVTNLEDAAEHIGEVLKRVK-KEHLKRAYKIKDWVDEND 416 (457)
Q Consensus 349 ~~~~i~liDtPGi~~~~~~-----------~e~dlvL~gvv~~~~l~~~~~~i~~~L~~~~-~~~l~~~y~i~~~~~~~e 416 (457)
-+..+.||||||....... ...|.++..+...... +....+ ..+...- +.....++++|.......
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~-~~~~~~-~~~~~~~~~i~gvVlnK~D~~~~~g~ 256 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ-QAGIQA-KAFKEAVGEIGSIIVTKLDGSAKGGG 256 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG-GHHHHH-HHHHTTSCSCEEEEEECSSSCSTTHH
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH-HHHHHH-HHHhhcccCCeEEEEeCCCCccchHH
Confidence 1346899999998753211 1356666655443332 222222 2223222 236677888886544344
Q ss_pred HHHHHHHHcC
Q 012726 417 FLLQLCKSTG 426 (457)
Q Consensus 417 fL~~la~r~g 426 (457)
.++ +....|
T Consensus 257 ~l~-~~~~~~ 265 (432)
T 2v3c_C 257 ALS-AVAETK 265 (432)
T ss_dssp HHH-HHHHSS
T ss_pred HHH-HHHHHC
Confidence 444 344443
No 395
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=96.84 E-value=0.0021 Score=70.74 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=51.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecC
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKC 253 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKi 253 (457)
+....++||||..+. ..|+..++.-+|-+|.||||..........+.+...+. +.|.|+++||+
T Consensus 84 ~~~iNlIDTPGHvDF--------------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~--~lp~i~~iNKi 147 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDF--------------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY--GVPRIVYVNKM 147 (709)
T ss_dssp CEEEEEECCCSCTTC--------------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH--TCCEEEEEECS
T ss_pred CEEEEEEeCCCCccc--------------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc--CCCeEEEEccc
Confidence 445567899987542 35678899999999999999877765555666665553 79999999999
Q ss_pred CCC
Q 012726 254 DLV 256 (457)
Q Consensus 254 DLv 256 (457)
|..
T Consensus 148 Dr~ 150 (709)
T 4fn5_A 148 DRQ 150 (709)
T ss_dssp SST
T ss_pred ccc
Confidence 985
No 396
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.83 E-value=0.0015 Score=59.81 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=43.3
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHH-HHHHhhhccCEEEEEeeCC-CCCCCCCHHHHHHHHHh--------cCCCc
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWG-ELYKVIDSSDVVVQVLDAR-DPQGTRCHHLERHLKEH--------CKHKH 245 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~-el~k~I~~sDvIL~VvDar-dp~~s~~~~l~k~L~~~--------~~~K~ 245 (457)
...+.|++|..... .++. .+...+..+|++|+|+|+. ++.+ ...+..++... ..+.|
T Consensus 56 ~~~l~Dt~G~~~~~-----------~~~~~~~~~~~~~~~~~i~v~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p 122 (218)
T 1nrj_B 56 GVTLVDFPGHVKLR-----------YKLSDYLKTRAKFVKGLIFMVDSTVDPKK--LTTTAEFLVDILSITESSCENGID 122 (218)
T ss_dssp SCEEEECCCCGGGT-----------HHHHHHHHHHGGGEEEEEEEEETTSCTTC--CHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred eEEEEECCCcHHHH-----------HHHHHHHHhccccCCEEEEEEECCCChHH--HHHHHHHHHHHHhcccccccCCCC
Confidence 34467888875321 1222 2223345589999999998 4432 22333333221 14789
Q ss_pred EEEEeecCCCCChhh
Q 012726 246 MILLLNKCDLVPAWA 260 (457)
Q Consensus 246 vIlVLNKiDLvp~~~ 260 (457)
+++|+||+|+.+...
T Consensus 123 ~ilv~nK~Dl~~~~~ 137 (218)
T 1nrj_B 123 ILIACNKSELFTARP 137 (218)
T ss_dssp EEEEEECTTSTTCCC
T ss_pred EEEEEEchHhcccCC
Confidence 999999999986543
No 397
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.73 E-value=0.0029 Score=57.33 Aligned_cols=91 Identities=13% Similarity=0.032 Sum_probs=58.1
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
....+|++++|+|+.++.+... ..+...+... ..+.|+++|+||+||.... ........+........+.+|++.+.
T Consensus 74 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~ 153 (199)
T 2f9l_A 74 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDST 153 (199)
T ss_dssp HHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence 3467899999999976543211 1122222221 2467899999999996421 11112233334444566778999999
Q ss_pred ChHHHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQFAR 299 (457)
Q Consensus 286 Gi~~Li~~L~~~~~ 299 (457)
|+.++++.|.+.+.
T Consensus 154 ~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 154 NVEEAFKNILTEIY 167 (199)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887664
No 398
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00076 Score=60.41 Aligned_cols=83 Identities=16% Similarity=0.145 Sum_probs=47.7
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCC-CCCCCCCHHHHHHHHH----h----cCCCc
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDAR-DPQGTRCHHLERHLKE----H----CKHKH 245 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDar-dp~~s~~~~l~k~L~~----~----~~~K~ 245 (457)
....+.|++|...... .....+...+..+|++|+|+|+. ++.+ ...+..++.. . ..+.|
T Consensus 91 ~~~~l~Dt~G~~~~~~----------~~~~~~~~~~~~~~~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p 158 (193)
T 2ged_A 91 SGVTLVDFPGHVKLRY----------KLSDYLKTRAKFVKGLIFMVDSTVDPKK--LTTTAEFLVDILSITESSCENGID 158 (193)
T ss_dssp TTCSEEEETTCCBSSC----------CHHHHHHHHGGGEEEEEEEEETTCCHHH--HHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred CeEEEEECCCCchHHH----------HHHHHHHhhcccCCEEEEEEECCCCchh--HHHHHHHHHHHHhhhhhccccCCC
Confidence 3455678888643211 11222344557799999999997 3211 1122222221 1 14789
Q ss_pred EEEEeecCCCCChhhHHHHHHHHH
Q 012726 246 MILLLNKCDLVPAWATKGWLRVLS 269 (457)
Q Consensus 246 vIlVLNKiDLvp~~~~~~wl~~l~ 269 (457)
+++|+||+|+.+........+.+.
T Consensus 159 ~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 159 ILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999999987554444444443
No 399
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.63 E-value=0.00076 Score=67.80 Aligned_cols=112 Identities=9% Similarity=0.031 Sum_probs=62.9
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh-cCCCcEEEEeecCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH-CKHKHMILLLNKCD 254 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~-~~~K~vIlVLNKiD 254 (457)
...++|+||+....... ........+...+...+..+|+||+|+|+....... ....+.+... ..++|+|+|+||+|
T Consensus 137 ~l~lvDtPG~~~~~~~~-q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDG-QSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SEEEEECCCBCSSCCTT-CCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CeEEEECCCCCcCCcCC-CchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeCCc
Confidence 34568999986432110 011122455566778899999999999874322111 2233333332 23679999999999
Q ss_pred CCChhhHHHHHHHHHh---cCCeeEEEeeccCCCChHHHH
Q 012726 255 LVPAWATKGWLRVLSK---EYPSLAFHASINKSFGKGSLL 291 (457)
Q Consensus 255 Lvp~~~~~~wl~~l~~---~~p~~~f~iSa~~~~Gi~~Li 291 (457)
+++.... +.+.+.. ......+.+|+..+.+++.+.
T Consensus 215 l~~~~~~--~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~ 252 (360)
T 3t34_A 215 LMDKGTD--AVEILEGRSFKLKYPWVGVVNRSQADINKNV 252 (360)
T ss_dssp GCCTTCC--SHHHHTTSSSCCSSCCEEECCCCHHHHHTTC
T ss_pred cCCCccc--HHHHHcCccccccCCeEEEEECChHHhccCC
Confidence 9865321 2222322 122334556777766665543
No 400
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.59 E-value=0.005 Score=58.17 Aligned_cols=95 Identities=11% Similarity=-0.022 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHH---HHHHHhc--CCCcEEEEeecC-CCCChhhHHHHHHHHHh--
Q 012726 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLE---RHLKEHC--KHKHMILLLNKC-DLVPAWATKGWLRVLSK-- 270 (457)
Q Consensus 200 kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~---k~L~~~~--~~K~vIlVLNKi-DLvp~~~~~~wl~~l~~-- 270 (457)
+.+|+. +.+++|.||||||+.|..-... .++. +.+.... .+.|++++.||. |+...-...+..+.|.-
T Consensus 116 RplWr~---Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~L~~ 192 (227)
T 3l82_B 116 IPQIQK---VCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 192 (227)
T ss_dssp -CCHHH---HHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHH---HhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcCCcC
Confidence 444555 4578999999999977632212 1221 1122211 467888899996 66322122233333321
Q ss_pred -cCCeeEEEeeccCCCChHHHHHHHHHH
Q 012726 271 -EYPSLAFHASINKSFGKGSLLSVLRQF 297 (457)
Q Consensus 271 -~~p~~~f~iSa~~~~Gi~~Li~~L~~~ 297 (457)
..+..+..+||.+|.|+.+-+++|.+.
T Consensus 193 l~R~W~Iq~csA~TGeGL~EGLdWL~~~ 220 (227)
T 3l82_B 193 LNHPWLVQDTEAETLTGFLNGIEWILEE 220 (227)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHTTT
T ss_pred CCCCEEEEEeECCCCcCHHHHHHHHHHH
Confidence 246778899999999999988888644
No 401
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.33 E-value=0.0022 Score=64.88 Aligned_cols=75 Identities=8% Similarity=-0.012 Sum_probs=37.7
Q ss_pred cCEEEEEeeC-CCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHHHH---HHhcCCeeEEEeeccCCCChH
Q 012726 213 SDVVVQVLDA-RDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWLRV---LSKEYPSLAFHASINKSFGKG 288 (457)
Q Consensus 213 sDvIL~VvDa-rdp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl~~---l~~~~p~~~f~iSa~~~~Gi~ 288 (457)
+|++++++|. ..++...+. .++.....+.|+|+|+||+|+.....+..+.+. +...+...+|.+||..+.+ +
T Consensus 146 v~~~vy~I~~~~~~l~~~d~---~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~ 221 (361)
T 2qag_A 146 VHCCFYFISPFGHGLKPLDV---AFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D 221 (361)
T ss_dssp CCEEEEEECSSSSSCCHHHH---HHHHHTCS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred eEEEEEEEecCCCCcchhHH---HHHHHhccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence 3578888875 444432222 333333457899999999999876554432222 2233345567779998887 4
Q ss_pred HHH
Q 012726 289 SLL 291 (457)
Q Consensus 289 ~Li 291 (457)
+.+
T Consensus 222 e~~ 224 (361)
T 2qag_A 222 EDF 224 (361)
T ss_dssp --C
T ss_pred hhH
Confidence 433
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.28 E-value=0.0063 Score=56.01 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=50.9
Q ss_pred cCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChh--hHHHHHHHHHhcC-CeeEEEeeccCCCChHH
Q 012726 213 SDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAW--ATKGWLRVLSKEY-PSLAFHASINKSFGKGS 289 (457)
Q Consensus 213 sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~--~~~~wl~~l~~~~-p~~~f~iSa~~~~Gi~~ 289 (457)
.+.++.|+|+..+....... ...+ ++|.++|+||+|+.+.. ......+.+.... ...++.+||+++.|+++
T Consensus 140 ~~~~~~v~~~~~~~~~~~~~-~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 213 (226)
T 2hf9_A 140 THKRIVVISTTEGDDTIEKH-PGIM-----KTADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDK 213 (226)
T ss_dssp CSEEEEEEEGGGCTTTTTTC-HHHH-----TTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHH
T ss_pred cCcEEEEEecCcchhhHhhh-hhHh-----hcCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHH
Confidence 45678888864332211111 1111 57899999999997542 2233333343333 24677889999999999
Q ss_pred HHHHHHHHHH
Q 012726 290 LLSVLRQFAR 299 (457)
Q Consensus 290 Li~~L~~~~~ 299 (457)
|++.|.+.+.
T Consensus 214 l~~~l~~~~~ 223 (226)
T 2hf9_A 214 VLEFIEKSVK 223 (226)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876653
No 403
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=96.27 E-value=0.0024 Score=64.52 Aligned_cols=91 Identities=11% Similarity=0.164 Sum_probs=57.0
Q ss_pred hhhccCEEEEEeeCCCCCC--------CCCHHHHHHHHH-----hcCCCcEEEEeecCCCCCh-----------------
Q 012726 209 VIDSSDVVVQVLDARDPQG--------TRCHHLERHLKE-----HCKHKHMILLLNKCDLVPA----------------- 258 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~--------s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~----------------- 258 (457)
..++++.||+|+|..+... .+-.....++.. ...+.|+|||+||+||...
T Consensus 213 yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~ 292 (353)
T 1cip_A 213 CFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGS 292 (353)
T ss_dssp GCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSC
T ss_pred HHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccccchhhcccccCCC
Confidence 5689999999999976421 111222233322 1246899999999998522
Q ss_pred ---hhHHHHHHH-HHh------cCCeeEEEeeccCCCChHHHHHHHHHHHH
Q 012726 259 ---WATKGWLRV-LSK------EYPSLAFHASINKSFGKGSLLSVLRQFAR 299 (457)
Q Consensus 259 ---~~~~~wl~~-l~~------~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~ 299 (457)
+....|+.. +.. ......+.+||+.+.|+..+++.+.....
T Consensus 293 ~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 293 NTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp SCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 222333321 111 23455667899999999999888876553
No 404
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.14 E-value=0.016 Score=60.37 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.7
Q ss_pred cceEEEEeecCCCchHHHHHHHh
Q 012726 305 QAISVGFVGYPNVGKSSVINTLR 327 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~ 327 (457)
++..|+++|.+||||||+++.|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHH
Confidence 35678999999999999999997
No 405
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.13 E-value=0.0087 Score=53.96 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=55.9
Q ss_pred hhhccCEEEEEeeCCCCCCCCC-HHHHHHHHHh-cCCCcEEEEeecCCCCChh-hHHHHHHHHHhcCCeeEEEeeccCCC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRC-HHLERHLKEH-CKHKHMILLLNKCDLVPAW-ATKGWLRVLSKEYPSLAFHASINKSF 285 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~-~~l~k~L~~~-~~~K~vIlVLNKiDLvp~~-~~~~wl~~l~~~~p~~~f~iSa~~~~ 285 (457)
....+|.+++|+|..++.+... ..+...+... ....|+++|+||+||.... ........+........+.+|++.+.
T Consensus 98 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 98 YYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST 177 (191)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred HhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 3467899999999866532111 1112222221 2367899999999996421 11222333444444566778999999
Q ss_pred ChHHHHHHHHHH
Q 012726 286 GKGSLLSVLRQF 297 (457)
Q Consensus 286 Gi~~Li~~L~~~ 297 (457)
|+.++++.|.+.
T Consensus 178 ~v~~l~~~l~~~ 189 (191)
T 1oix_A 178 NVEAAFQTILTE 189 (191)
T ss_dssp THHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999988754
No 406
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.13 E-value=0.0059 Score=58.58 Aligned_cols=77 Identities=9% Similarity=0.099 Sum_probs=44.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhh--hccCEEEEEeeCCCC-CCCCCHHHHHHHHHhcCC---CcEEEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVI--DSSDVVVQVLDARDP-QGTRCHHLERHLKEHCKH---KHMILL 249 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I--~~sDvIL~VvDardp-~~s~~~~l~k~L~~~~~~---K~vIlV 249 (457)
...+.|+||+.+... + ...+++.+...+ ..+|++|+|+|+... +...+..+.+.+...... +|+|+|
T Consensus 88 ~l~iiDTpG~~~~~~--~-----~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV 160 (270)
T 1h65_A 88 TLNIIDTPGLIEGGY--I-----NDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVA 160 (270)
T ss_dssp EEEEEECCCSEETTE--E-----CHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred EEEEEECCCCCCCcc--c-----hHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEE
Confidence 345789999853211 0 122334444433 479999999877432 211122344445432221 699999
Q ss_pred eecCCCCChh
Q 012726 250 LNKCDLVPAW 259 (457)
Q Consensus 250 LNKiDLvp~~ 259 (457)
+||+|+.+..
T Consensus 161 ~nK~Dl~~~~ 170 (270)
T 1h65_A 161 LTHAQFSPPD 170 (270)
T ss_dssp EECCSCCCGG
T ss_pred EECcccCCcC
Confidence 9999998754
No 407
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.94 E-value=0.019 Score=62.00 Aligned_cols=23 Identities=30% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEeecCCCchHHHHHHHhCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
.+++||.+|+|||||+++|.|..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999999863
No 408
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=95.90 E-value=0.0071 Score=61.27 Aligned_cols=91 Identities=13% Similarity=0.175 Sum_probs=54.6
Q ss_pred HhhhccCEEEEEeeCCCCC--------CCCCHHHHHHHHH-----hcCCCcEEEEeecCCCCCh----------------
Q 012726 208 KVIDSSDVVVQVLDARDPQ--------GTRCHHLERHLKE-----HCKHKHMILLLNKCDLVPA---------------- 258 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~--------~s~~~~l~k~L~~-----~~~~K~vIlVLNKiDLvp~---------------- 258 (457)
...++++.||+|+|..+.. ..+-.....++.. ...+.|+|||+||+||...
T Consensus 220 ~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g 299 (362)
T 1zcb_A 220 ECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEG 299 (362)
T ss_dssp TSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCS
T ss_pred HHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccC
Confidence 3568999999999997631 0111122222222 1246899999999998521
Q ss_pred -----hhHHHHHH-HHHh------cCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 259 -----WATKGWLR-VLSK------EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 259 -----~~~~~wl~-~l~~------~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
+....|+. .+.. ..+...+.+||+.+.|+..+++.+....
T Consensus 300 ~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 300 DPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp CTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 12222321 1111 2234556689999999999988876654
No 409
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.82 E-value=0.029 Score=55.36 Aligned_cols=96 Identities=9% Similarity=-0.033 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhhccCEEEEEeeCCCCCCCCC-HHHH---HHHHHh--cCCCcEEEEeec-CCCCChhhHHHHHHHHHh--
Q 012726 200 KRIWGELYKVIDSSDVVVQVLDARDPQGTRC-HHLE---RHLKEH--CKHKHMILLLNK-CDLVPAWATKGWLRVLSK-- 270 (457)
Q Consensus 200 kr~~~el~k~I~~sDvIL~VvDardp~~s~~-~~l~---k~L~~~--~~~K~vIlVLNK-iDLvp~~~~~~wl~~l~~-- 270 (457)
+.+|+.- .+++|.||+|||+.|..--.. .++. +.+.+. ..+.|++++.|| -|+...-...+..+.|.-
T Consensus 201 RplWr~Y---y~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L~L~~ 277 (312)
T 3l2o_B 201 IPQIQKV---CEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELHLNL 277 (312)
T ss_dssp CHHHHHH---HHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHTTGGG
T ss_pred HHHHHHH---hcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHcCCcc
Confidence 5566664 468899999999977642211 1222 233222 257899999997 477432222233333321
Q ss_pred -cCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 271 -EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 271 -~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
..+..+..+||.+|.|+.+-++.|.+.+
T Consensus 278 l~r~W~Iq~csA~tGeGL~EGldWL~~~l 306 (312)
T 3l2o_B 278 LNHPWLVQDTEAETLTGFLNGIEWILEEV 306 (312)
T ss_dssp GCSCEEEEEEETTTCTTHHHHHHHHHHHS
T ss_pred CCCcEEEEecccCCCcCHHHHHHHHHHHH
Confidence 2467788999999999999888887654
No 410
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.81 E-value=0.0096 Score=62.12 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=38.2
Q ss_pred eEEEEeecCCCchHHHHHHHhC-----------------CCCceecCC-CCcee-EEEEE-----Ec--C--CcEEEEec
Q 012726 307 ISVGFVGYPNVGKSSVINTLRT-----------------KNVCKVAPI-PGETK-VWQYI-----TL--T--KRIFLIDC 358 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~-----------------~~~~~vs~~-pg~T~-~~~~~-----~~--~--~~i~liDt 358 (457)
.-|+|+|.+++|||+|+|.|++ .....+++. -.+|+ .|.+. .. + ..+.|+||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4578999999999999997752 122334322 22444 45442 11 1 24899999
Q ss_pred CCcccCCC
Q 012726 359 PGVVYQNK 366 (457)
Q Consensus 359 PGi~~~~~ 366 (457)
.|+.....
T Consensus 148 EG~~d~~~ 155 (457)
T 4ido_A 148 QGTFDSQS 155 (457)
T ss_dssp CCBTCTTC
T ss_pred cCCCCccc
Confidence 99986654
No 411
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=95.68 E-value=0.015 Score=58.21 Aligned_cols=85 Identities=15% Similarity=0.068 Sum_probs=50.8
Q ss_pred hhhccCEEEEEeeCCCCCCCCCHHHHHHHH---HhcCCCcEEEEeecCCCCChhh--------HHHHHHHHHhc----CC
Q 012726 209 VIDSSDVVVQVLDARDPQGTRCHHLERHLK---EHCKHKHMILLLNKCDLVPAWA--------TKGWLRVLSKE----YP 273 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~~s~~~~l~k~L~---~~~~~K~vIlVLNKiDLvp~~~--------~~~wl~~l~~~----~p 273 (457)
....++.+|+|+|+.+.+......+.+++. ...++.|+++|.||+||.+... ...-.+.+.+. +.
T Consensus 69 yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~ 148 (331)
T 3r7w_B 69 LFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQ 148 (331)
T ss_dssp HHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCC
T ss_pred hccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccC
Confidence 457899999999998872111122323333 2346789999999999987431 11122233332 33
Q ss_pred eeEEEeeccCCCChHHHHHHH
Q 012726 274 SLAFHASINKSFGKGSLLSVL 294 (457)
Q Consensus 274 ~~~f~iSa~~~~Gi~~Li~~L 294 (457)
...|..||+. .++.+....|
T Consensus 149 i~f~eTSAkd-~nV~eAFs~i 168 (331)
T 3r7w_B 149 VSFYLTSIFD-HSIYEAFSRI 168 (331)
T ss_dssp EEEECCCSSS-SHHHHHHHHH
T ss_pred ceEEEeccCC-CcHHHHHHHH
Confidence 5566679976 4666555444
No 412
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.59 E-value=0.0026 Score=71.40 Aligned_cols=65 Identities=15% Similarity=0.207 Sum_probs=45.5
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcEEEEeecCCC
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHMILLLNKCDL 255 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDL 255 (457)
...+.|+||..+. ..++..++..+|.+|+|+|+.++.......+...+.. .+.|+|+|+||+|+
T Consensus 99 ~i~liDTPG~~df--------------~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--~~~p~ilviNK~D~ 162 (842)
T 1n0u_A 99 LINLIDSPGHVDF--------------SSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--ERIKPVVVINKVDR 162 (842)
T ss_dssp EEEEECCCCCCSS--------------CHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--TTCEEEEEEECHHH
T ss_pred eEEEEECcCchhh--------------HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--cCCCeEEEEECCCc
Confidence 3456888887532 1245567789999999999988765443333333332 47899999999998
Q ss_pred C
Q 012726 256 V 256 (457)
Q Consensus 256 v 256 (457)
.
T Consensus 163 ~ 163 (842)
T 1n0u_A 163 A 163 (842)
T ss_dssp H
T ss_pred c
Confidence 6
No 413
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.45 E-value=0.028 Score=55.17 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=47.8
Q ss_pred ccCEEEEEeeCCCCCC-CCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHH---HHHHHHHhcCCeeEEEeeccCCCCh
Q 012726 212 SSDVVVQVLDARDPQG-TRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATK---GWLRVLSKEYPSLAFHASINKSFGK 287 (457)
Q Consensus 212 ~sDvIL~VvDardp~~-s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~---~wl~~l~~~~p~~~f~iSa~~~~Gi 287 (457)
.++++|++++ |.+ +.++.-.+.++......++++|+||+|+....... .....+...+...+|.+||.++ |+
T Consensus 126 ra~~ll~lde---Pt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v 201 (301)
T 2qnr_A 126 RVHCCFYFIS---PFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DE 201 (301)
T ss_dssp CCCEEEEEEC---SSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC-------
T ss_pred hhhheeeeec---CcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cc
Confidence 4455666665 322 23443334555444457999999999998754332 1222222333455677899999 99
Q ss_pred HHHHHHHHHHHHhhcCccceEEEEeec
Q 012726 288 GSLLSVLRQFARLKSDKQAISVGFVGY 314 (457)
Q Consensus 288 ~~Li~~L~~~~~~~~~~~~i~v~vvG~ 314 (457)
++++..+.+.+.. .+..++||-
T Consensus 202 ~e~f~~l~~~i~~-----~~p~avigs 223 (301)
T 2qnr_A 202 DEDFKEQTRLLKA-----SIPFSVVGS 223 (301)
T ss_dssp ---CHHHHHHHHT-----TCSEECCCC
T ss_pred cHHHHHHHHHhhc-----CCCceEECC
Confidence 9888777665532 334567664
No 414
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.43 E-value=0.016 Score=57.57 Aligned_cols=84 Identities=13% Similarity=0.077 Sum_probs=50.2
Q ss_pred CCcEEEEeecCCCCChhhHHHHHHHHHhcCCeeEEEeeccCCCChHHHHHHHHHHHHh----hc---CccceEEEEeecC
Q 012726 243 HKHMILLLNKCDLVPAWATKGWLRVLSKEYPSLAFHASINKSFGKGSLLSVLRQFARL----KS---DKQAISVGFVGYP 315 (457)
Q Consensus 243 ~K~vIlVLNKiDLvp~~~~~~wl~~l~~~~p~~~f~iSa~~~~Gi~~Li~~L~~~~~~----~~---~~~~i~v~vvG~p 315 (457)
.....+|++|.|..|++.+ +...+ ....++..+......+..|...|...+.. |. +-.+..|+++|.+
T Consensus 79 ~~~P~IIltrg~~~peeli----e~A~~-~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~s 153 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEELI----EAAKE-HETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDS 153 (314)
T ss_dssp TTCCCEEECTTCCCCHHHH----HHHHH-TTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEEST
T ss_pred CCCCEEEEeCCCCCCHHHH----HHHHH-CCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCC
Confidence 4566888999998876532 22222 23444544544444444444444332111 10 1135678999999
Q ss_pred CCchHHHHHHHhCCCC
Q 012726 316 NVGKSSVINTLRTKNV 331 (457)
Q Consensus 316 NvGKSSliN~L~~~~~ 331 (457)
|+||||+.+.|..+..
T Consensus 154 G~GKSt~a~~l~~~g~ 169 (314)
T 1ko7_A 154 GIGKSETALELIKRGH 169 (314)
T ss_dssp TSSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHhcCC
Confidence 9999999999997644
No 415
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.18 E-value=0.013 Score=53.76 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhCC
Q 012726 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 289 ~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+|++.|.+..... ...+..|+++|.+|+|||||++.|.+.
T Consensus 6 ~~~~~~~~~~~~~-~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 6 ALCQGVLERLDPR-QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHSCTT-CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4555554433222 345678999999999999999999763
No 416
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.08 E-value=0.01 Score=55.14 Aligned_cols=57 Identities=23% Similarity=0.264 Sum_probs=37.1
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCCC-ceecCCCCceeEEEEEEc-CCcEEEEecCCcc
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKNV-CKVAPIPGETKVWQYITL-TKRIFLIDCPGVV 362 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~~-~~vs~~pg~T~~~~~~~~-~~~i~liDtPGi~ 362 (457)
+..|+++|.+|+|||||++.|++... .-...++.||+....... +..+.++|.+.+.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~ 77 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMT 77 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhh
Confidence 45689999999999999999997543 234556667764432212 2344556655543
No 417
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.94 E-value=0.022 Score=54.35 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=45.6
Q ss_pred ccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhh--hccCEEEEEeeCCCCC-CCCCHHHHHHHHHhcC---CCcEEEE
Q 012726 176 SAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVI--DSSDVVVQVLDARDPQ-GTRCHHLERHLKEHCK---HKHMILL 249 (457)
Q Consensus 176 q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I--~~sDvIL~VvDardp~-~s~~~~l~k~L~~~~~---~K~vIlV 249 (457)
...+.|+||+.+... ......+.+++.+ ..+|+||+|+|+..+- ......+.+.|..... .+|+++|
T Consensus 85 ~l~liDTpG~~~~~~-------~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv 157 (262)
T 3def_A 85 TINIIDTPGLVEAGY-------VNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLV 157 (262)
T ss_dssp EEEEEECCCSEETTE-------ECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred eEEEEECCCCCCccc-------chHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEE
Confidence 445789999854321 1133444455444 4789999998764432 2222345555554221 2589999
Q ss_pred eecCCCCCh
Q 012726 250 LNKCDLVPA 258 (457)
Q Consensus 250 LNKiDLvp~ 258 (457)
+||+|+.+.
T Consensus 158 ~nK~Dl~~~ 166 (262)
T 3def_A 158 LTHAQFSPP 166 (262)
T ss_dssp EECTTCCCS
T ss_pred EeCcccCCC
Confidence 999999743
No 418
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.78 E-value=0.013 Score=60.48 Aligned_cols=82 Identities=7% Similarity=0.057 Sum_probs=35.5
Q ss_pred ccCEEEEEeeCC-CCCCCCCHHHHHHHHHhcCCCcEEEEeecCCCCChhhHHHHH----HHHHhcCCeeEEEeeccCCCC
Q 012726 212 SSDVVVQVLDAR-DPQGTRCHHLERHLKEHCKHKHMILLLNKCDLVPAWATKGWL----RVLSKEYPSLAFHASINKSFG 286 (457)
Q Consensus 212 ~sDvIL~VvDar-dp~~s~~~~l~k~L~~~~~~K~vIlVLNKiDLvp~~~~~~wl----~~l~~~~p~~~f~iSa~~~~G 286 (457)
.+|+||++++.. ..+ ++.-..++.....+.++|+|+||+|++....+..+. +.+.. +...+|..|+..+.+
T Consensus 138 ~~~vlL~ldePt~~~L---~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~-~~i~~~~~sa~~~~~ 213 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGL---KPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFKKQIMKEIQE-HKIKIYEFPETDDEE 213 (418)
T ss_dssp -CCEEEEECCC-CCSC---CHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHH-HTCCCCCCC------
T ss_pred CeeEEEEEecCcccCC---CHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHHHHHHHHHHH-cCCeEEeCCCCCCcC
Confidence 356677777543 233 222123444333478999999999999765444322 22222 233455668888888
Q ss_pred hHHHHHHHHHH
Q 012726 287 KGSLLSVLRQF 297 (457)
Q Consensus 287 i~~Li~~L~~~ 297 (457)
+..+...|.+.
T Consensus 214 v~~~~~~l~~~ 224 (418)
T 2qag_C 214 ENKLVKKIKDR 224 (418)
T ss_dssp -----------
T ss_pred HHHHHHHHHhh
Confidence 77666555543
No 419
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=94.71 E-value=0.024 Score=57.21 Aligned_cols=90 Identities=9% Similarity=0.111 Sum_probs=52.6
Q ss_pred hhhccCEEEEEeeCCC--------CCCCCCHHHHHHHHHh-----cCCCcEEEEeecCCCCChh----------------
Q 012726 209 VIDSSDVVVQVLDARD--------PQGTRCHHLERHLKEH-----CKHKHMILLLNKCDLVPAW---------------- 259 (457)
Q Consensus 209 ~I~~sDvIL~VvDard--------p~~s~~~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~---------------- 259 (457)
...++|.||+|+|..+ .-...-..+..++... .++.|+|||+||+||....
T Consensus 203 y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~ 282 (354)
T 2xtz_A 203 LFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQ 282 (354)
T ss_dssp GCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCC
T ss_pred HhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccc
Confidence 5688999999999851 1111112222333221 2578999999999984211
Q ss_pred ----------hHHHHHH-HHHh-----------cCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 260 ----------ATKGWLR-VLSK-----------EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 260 ----------~~~~wl~-~l~~-----------~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
....|+. .+.. ......+.+||+.+.|+..+.+.+.+..
T Consensus 283 ~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I 343 (354)
T 2xtz_A 283 PVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETL 343 (354)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHHHHH
Confidence 1122211 1111 1123346689999999999888876544
No 420
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.50 E-value=0.015 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.1
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
-.++++|.+|+|||||++.|.+..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998743
No 421
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=94.36 E-value=0.0082 Score=61.21 Aligned_cols=114 Identities=11% Similarity=0.097 Sum_probs=66.0
Q ss_pred hhccccccccchhhcCCCCCCCCcCCCcCCHHHHHHHHhhhHHHHhhhhccccccCCcCCcchHhhhhhhhhcccchHHH
Q 012726 123 ARVHLLDTEPFQDAFGPKGKRKRPKLLASDYESLVKRADGSQDAFEQKNDASTSAEGVEGDGFRDLVRHTMFEKGQSKRI 202 (457)
Q Consensus 123 ~~~~~~~~~~f~~~fg~~~~rk~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~q~~~~d~~g~~~~~~~~l~~~~~~kr~ 202 (457)
..+|+.++..|+.+-|.+..- ...+..+++.. .....+...+.+++|+||+...... + +.+
T Consensus 79 G~PNvGKSTL~n~Lt~~~~~v--~~~pftT~~~~----------~g~~~~~~~~i~l~D~pGl~~~a~~-----~--~~~ 139 (376)
T 4a9a_A 79 GFPSVGKSTLLSKLTGTESEA--AEYEFTTLVTV----------PGVIRYKGAKIQMLDLPGIIDGAKD-----G--RGR 139 (376)
T ss_dssp CCCCHHHHHHHHHHHSBCCCG--GGTCSSCCCEE----------EEEEEETTEEEEEEECGGGCCC------------CH
T ss_pred CCCCCCHHHHHHHHhCCCCcc--cCCCCceeeee----------eEEEEeCCcEEEEEeCCCccCCchh-----h--hHH
Confidence 567777777788777643110 11111121100 0112234556678999998532211 1 335
Q ss_pred HHHHHHhhhccCEEEEEeeCCCCCCCCCHHHHHHHHHh---cCCCcEEEEeecCCCC
Q 012726 203 WGELYKVIDSSDVVVQVLDARDPQGTRCHHLERHLKEH---CKHKHMILLLNKCDLV 256 (457)
Q Consensus 203 ~~el~k~I~~sDvIL~VvDardp~~s~~~~l~k~L~~~---~~~K~vIlVLNKiDLv 256 (457)
.+++...+.++|+|++|+|+.+|... ...++..|... -..+|.++++||+|.-
T Consensus 140 g~~~l~~i~~ad~il~vvD~~~p~~~-~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 140 GKQVIAVARTCNLLFIILDVNKPLHH-KQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHHHCSEEEEEEETTSHHHH-HHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHhcCccccccccCccHHH-HHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 57778889999999999999987532 12233334321 1367899999999963
No 422
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.13 E-value=0.056 Score=49.27 Aligned_cols=40 Identities=18% Similarity=0.257 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhC
Q 012726 289 SLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 289 ~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
.+++.|.+.........+..|+++|.+|+||||+++.|.+
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444444332234567899999999999999999864
No 423
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.97 E-value=0.1 Score=53.99 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.4
Q ss_pred cceEEEEeecCCCchHHHHHHHh
Q 012726 305 QAISVGFVGYPNVGKSSVINTLR 327 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~ 327 (457)
.+..|+++|.+||||||+++.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999999999996
No 424
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=93.90 E-value=0.072 Score=54.71 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=53.6
Q ss_pred hhhccCEEEEEeeCCCCC------CCCC--HHHHHHHHHh-----cCCCcEEEEeecCCCCChhh---------------
Q 012726 209 VIDSSDVVVQVLDARDPQ------GTRC--HHLERHLKEH-----CKHKHMILLLNKCDLVPAWA--------------- 260 (457)
Q Consensus 209 ~I~~sDvIL~VvDardp~------~s~~--~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~~--------------- 260 (457)
...+++.||+|+|..+.. .+.+ ..+..++... .++.|+|||+||+||.....
T Consensus 237 yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~ 316 (402)
T 1azs_C 237 CFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFA 316 (402)
T ss_dssp GTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGG
T ss_pred hccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcccccchhhcccccc
Confidence 567899999999997610 0011 2233333321 24689999999999843211
Q ss_pred --------------------HHHHH-HHHHhc--------CCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 261 --------------------TKGWL-RVLSKE--------YPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 261 --------------------~~~wl-~~l~~~--------~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
...|+ ..+... .....+.+||+.+.|+..++..+....
T Consensus 317 ~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF~~v~~~I 383 (402)
T 1azs_C 317 RYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVFNDCRDII 383 (402)
T ss_dssp TCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHHHHHHHHH
Confidence 11221 111111 233445679999999999888876654
No 425
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.87 E-value=0.037 Score=49.41 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.+-.++++|.||+||||+++.|.+.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3456899999999999999999875
No 426
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.69 E-value=0.28 Score=50.69 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred cceEEEEeecCCCchHHHHHHHh
Q 012726 305 QAISVGFVGYPNVGKSSVINTLR 327 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~ 327 (457)
.+..|+++|.+||||||++..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999999999996
No 427
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.65 E-value=0.03 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.561 Sum_probs=20.2
Q ss_pred EEEEeecCCCchHHHHHHHhCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.++++|.+|+|||||++.|.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 428
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=93.62 E-value=0.11 Score=52.75 Aligned_cols=43 Identities=19% Similarity=0.189 Sum_probs=28.3
Q ss_pred cccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhhccCEEEEEeeCCC
Q 012726 175 TSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARD 224 (457)
Q Consensus 175 ~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~~sDvIL~VvDard 224 (457)
....+.|++|+...... + +.+.++....+..+|+|++|+|+.+
T Consensus 69 ~~i~lvDtpGl~~~a~~-----~--~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 69 THVEFVDIAGLVKGAHK-----G--EGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CEEEEEECCSCCCCCCS-----S--SCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred ceEEEEECCCccccccc-----c--chHHHHHHHHHHhCCEEEEEEECCC
Confidence 44567899998532111 1 1223455667889999999999975
No 429
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.61 E-value=0.056 Score=48.03 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhC
Q 012726 287 KGSLLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 287 i~~Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
....++.+++++.......+-.++++|.||+|||||+++|.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHH
Confidence 345556666666433333456789999999999999999875
No 430
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.48 E-value=0.028 Score=51.37 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.5
Q ss_pred eEEEEeecCCCchHHHHHHHhCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
-.++++|.+|+|||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 45899999999999999999863
No 431
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.45 E-value=0.15 Score=53.88 Aligned_cols=107 Identities=17% Similarity=0.205 Sum_probs=62.5
Q ss_pred ccccCCcCCcchHhhhhhhhhcccchHHHHHHHHHhhh--ccCEEEEEeeCCCCCCCCCHHHHHHHHHhcCCCcE-EEEe
Q 012726 174 STSAEGVEGDGFRDLVRHTMFEKGQSKRIWGELYKVID--SSDVVVQVLDARDPQGTRCHHLERHLKEHCKHKHM-ILLL 250 (457)
Q Consensus 174 ~~q~~~~d~~g~~~~~~~~l~~~~~~kr~~~el~k~I~--~sDvIL~VvDardp~~s~~~~l~k~L~~~~~~K~v-IlVL 250 (457)
....+++||+|..... ..++.++..+.+ .+|.+++|+||.... ....+.+.+.. ..|+ ++|+
T Consensus 183 ~~DvvIIDTpG~~~~~----------~~l~~el~~~~~~i~pd~vllVvDa~~g~--~~~~~a~~~~~---~~~i~gvVl 247 (504)
T 2j37_W 183 NFEIIIVDTSGRHKQE----------DSLFEEMLQVANAIQPDNIVYVMDASIGQ--ACEAQAKAFKD---KVDVASVIV 247 (504)
T ss_dssp TCCEEEEEECCCCTTC----------HHHHHHHHHHHHHHCCSEEEEEEETTCCT--THHHHHHHHHH---HHCCCCEEE
T ss_pred CCcEEEEeCCCCcccc----------hhHHHHHHHHHhhhcCceEEEEEeccccc--cHHHHHHHHHh---hcCceEEEE
Confidence 4456688999875311 223333333322 789999999997643 22333333332 2564 8999
Q ss_pred ecCCCCChhh-HHHHHHHHHhcCCee----------------EEEeeccCCCC-hHHHHHHHHHH
Q 012726 251 NKCDLVPAWA-TKGWLRVLSKEYPSL----------------AFHASINKSFG-KGSLLSVLRQF 297 (457)
Q Consensus 251 NKiDLvp~~~-~~~wl~~l~~~~p~~----------------~f~iSa~~~~G-i~~Li~~L~~~ 297 (457)
||+|...... ...+...+. .|.. .+.+|+..|.| +.+|++.+.+.
T Consensus 248 NK~D~~~~~g~~l~~~~~~g--~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 248 TKLDGHAKGGGALSAVAATK--SPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp ECTTSCCCCTHHHHHHHHHC--CCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred eCCccccchHHHHHHHHHhC--CCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9999975432 222322221 2211 12357888888 88898888765
No 432
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=93.34 E-value=0.075 Score=53.03 Aligned_cols=90 Identities=8% Similarity=0.132 Sum_probs=53.3
Q ss_pred HhhhccCEEEEEeeCC-------CCCCCCC--HHHHHHHHHh-----cCCCcEEEEeecCCCCChh--------------
Q 012726 208 KVIDSSDVVVQVLDAR-------DPQGTRC--HHLERHLKEH-----CKHKHMILLLNKCDLVPAW-------------- 259 (457)
Q Consensus 208 k~I~~sDvIL~VvDar-------dp~~s~~--~~l~k~L~~~-----~~~K~vIlVLNKiDLvp~~-------------- 259 (457)
....+++.||+|+|.. +.- +.+ .....++... ..+.|+||++||+||....
T Consensus 186 ~yf~~~~~iIfV~dls~ydq~l~d~~-~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~ 264 (327)
T 3ohm_A 186 HCFENVTSIMFLVALSEYDQVLVESD-NENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYD 264 (327)
T ss_dssp GGCSSCSEEEEEEEGGGGGCBCSSCT-TSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCC
T ss_pred HHhCCCCEEEEEEECccccccccccc-cHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhcc
Confidence 3568999999999764 211 122 1222233221 2468999999999985322
Q ss_pred ----hHHHHHHHH----Hh-----cCCeeEEEeeccCCCChHHHHHHHHHHH
Q 012726 260 ----ATKGWLRVL----SK-----EYPSLAFHASINKSFGKGSLLSVLRQFA 298 (457)
Q Consensus 260 ----~~~~wl~~l----~~-----~~p~~~f~iSa~~~~Gi~~Li~~L~~~~ 298 (457)
..+.-.+++ .. ..+...+..||+.+.++..+.+.+....
T Consensus 265 g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~I 316 (327)
T 3ohm_A 265 GPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTI 316 (327)
T ss_dssp SCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHH
Confidence 111222222 11 1233445569999999999888887654
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.28 E-value=0.029 Score=51.22 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.+.-|+++|.||+||||+++.|...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999754
No 434
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=93.28 E-value=0.069 Score=53.62 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=31.2
Q ss_pred HhhhccCEEEEEeeCCCCC------CCCC--HHHHHHHHH-----hcCCCcEEEEeecCCCCC
Q 012726 208 KVIDSSDVVVQVLDARDPQ------GTRC--HHLERHLKE-----HCKHKHMILLLNKCDLVP 257 (457)
Q Consensus 208 k~I~~sDvIL~VvDardp~------~s~~--~~l~k~L~~-----~~~~K~vIlVLNKiDLvp 257 (457)
....+++.||+|+|..+.. .+.+ .....++.. ...+.|+|||+||+||..
T Consensus 180 ~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 180 SFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp TTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHH
T ss_pred HHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhh
Confidence 4568999999999986210 0111 112222221 125789999999999864
No 435
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.12 E-value=0.05 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+.-++++|.+|+||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998754
No 436
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=92.81 E-value=0.052 Score=48.89 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.1
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+--++++|.+|+|||||++.|.+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 345899999999999999999874
No 437
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.76 E-value=0.044 Score=50.15 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+--++++|.+|+|||||++.|.+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 446899999999999999999874
No 438
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.72 E-value=0.12 Score=50.58 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=22.2
Q ss_pred CccceEEEEeecCCCchHHHHHHHhC
Q 012726 303 DKQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 303 ~~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
...+..|+++|.+|+|||||.+.|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34577899999999999999998864
No 439
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.55 E-value=0.061 Score=48.90 Aligned_cols=25 Identities=20% Similarity=0.433 Sum_probs=21.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.+..|+++|.+|+|||||++.|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999874
No 440
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.46 E-value=0.062 Score=48.38 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+..|+++|.+|+||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999998654
No 441
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.35 E-value=0.053 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=21.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+-.++++|.+|+|||||++.|.+.
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 445899999999999999999874
No 442
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.25 E-value=0.068 Score=47.52 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=18.9
Q ss_pred ceEEEEeecCCCchHHHHHHHh
Q 012726 306 AISVGFVGYPNVGKSSVINTLR 327 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~ 327 (457)
+--++++|.+|+|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3457999999999999999865
No 443
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.23 E-value=0.056 Score=48.59 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEeecCCCchHHHHHHHhCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
-++++|.+|+|||||++.|.+..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37999999999999999998643
No 444
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.10 E-value=0.072 Score=46.03 Aligned_cols=19 Identities=32% Similarity=0.476 Sum_probs=18.0
Q ss_pred EEEEeecCCCchHHHHHHH
Q 012726 308 SVGFVGYPNVGKSSVINTL 326 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L 326 (457)
-|+++|.||+||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 445
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.00 E-value=0.077 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.2
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
-.++++|.+|+|||||++.|.|-.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999854
No 446
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.97 E-value=0.12 Score=50.67 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.2
Q ss_pred ccceEEEEeecCCCchHHHHHHHhC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
..+..||++|.+|+|||||++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567799999999999999999986
No 447
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=91.86 E-value=0.079 Score=46.40 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
..|+++|.+|+||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999763
No 448
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=91.83 E-value=0.12 Score=51.32 Aligned_cols=39 Identities=28% Similarity=0.339 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhcCccceEEEEeecCCCchHHHHHHHhC
Q 012726 290 LLSVLRQFARLKSDKQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 290 Li~~L~~~~~~~~~~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
|......++.....+.++-||++|.+|+|||||++.|.+
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 444444444333344567899999999999999998853
No 449
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.82 E-value=0.08 Score=49.97 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3358999999999999999999854
No 450
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.78 E-value=0.07 Score=47.69 Aligned_cols=21 Identities=29% Similarity=0.286 Sum_probs=19.2
Q ss_pred EEEEeecCCCchHHHHHHHhC
Q 012726 308 SVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~ 328 (457)
-++++|.+|+||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 451
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=91.76 E-value=0.096 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEeecCCCchHHHHHHHhC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~ 328 (457)
.-|.++|.||+||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999976
No 452
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.68 E-value=0.07 Score=48.88 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=24.5
Q ss_pred EEEeecCCCchHHHHHHHhCCCCc-eecCCCCcee
Q 012726 309 VGFVGYPNVGKSSVINTLRTKNVC-KVAPIPGETK 342 (457)
Q Consensus 309 v~vvG~pNvGKSSliN~L~~~~~~-~vs~~pg~T~ 342 (457)
|.++|-+||||+||++.|+..... -.-.++.||+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR 38 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTR 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECS
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEecc
Confidence 789999999999999999865321 1223455555
No 453
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.63 E-value=0.086 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=19.0
Q ss_pred EEEEeecCCCchHHHHHHHhC
Q 012726 308 SVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~ 328 (457)
.|+++|.||+||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999964
No 454
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.59 E-value=0.087 Score=47.81 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
.+..|+++|.+|+||||+++.|.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345689999999999999999964
No 455
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.51 E-value=0.084 Score=49.37 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=22.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhCCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
.+--++++|.+|+|||||++.|.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccC
Confidence 35568999999999999999998754
No 456
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.44 E-value=0.097 Score=46.04 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.2
Q ss_pred ceEEEEeecCCCchHHHHHHHhC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
+..|+++|.+|+||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 457
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.41 E-value=0.12 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.3
Q ss_pred ceEEEEeecCCCchHHHHHHHhC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
+..|.++|.||+||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999864
No 458
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.39 E-value=0.095 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEeecCCCchHHHHHHHhCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~ 329 (457)
-++++|.+|+|||||++.|.+.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999999863
No 459
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.24 E-value=0.11 Score=45.94 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
+..|+++|.||+||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999963
No 460
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.19 E-value=0.1 Score=49.91 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999854
No 461
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.08 E-value=0.1 Score=50.04 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=21.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
-.++++|.+|+|||||++.|.|-.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 357999999999999999999854
No 462
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.08 E-value=0.1 Score=47.13 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEeecCCCchHHHHHHHhC
Q 012726 308 SVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~ 328 (457)
.|+++|.+|+||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999976
No 463
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.05 E-value=0.11 Score=49.38 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.9
Q ss_pred EEEEeecCCCchHHHHHHHhCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
.++++|.+|+|||||++.|.|-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999854
No 464
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=91.01 E-value=0.13 Score=46.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.1
Q ss_pred eEEEEeecCCCchHHHHHHHhC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~ 328 (457)
..|+++|.+|+||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 465
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.98 E-value=0.11 Score=49.45 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999854
No 466
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.98 E-value=0.12 Score=45.31 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.7
Q ss_pred eEEEEeecCCCchHHHHHHHhC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~ 328 (457)
..|.++|.||+||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999975
No 467
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.98 E-value=0.15 Score=46.32 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=22.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.+..|+++|.+|+||||+.+.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999999999875
No 468
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.97 E-value=0.11 Score=48.44 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEeecCCCchHHHHHHHhCCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
.++++|..|+|||||++.|.|-.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 469
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.96 E-value=0.13 Score=48.24 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=22.5
Q ss_pred ceEEEEeecCCCchHHHHHHHh---CCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLR---TKNV 331 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~---~~~~ 331 (457)
+..|+++|.+|+||||+++.|. +...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 4579999999999999999998 7543
No 470
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.93 E-value=0.13 Score=48.49 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999854
No 471
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.91 E-value=0.11 Score=50.03 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3457999999999999999999854
No 472
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.88 E-value=0.11 Score=48.66 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|..|+|||||++.|.|-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458999999999999999999854
No 473
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.87 E-value=0.12 Score=47.23 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=20.5
Q ss_pred ceEEEEeecCCCchHHHHHHHhC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
...|+++|.+|+||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999975
No 474
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.81 E-value=0.12 Score=45.69 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEeecCCCchHHHHHHHhC
Q 012726 308 SVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~ 328 (457)
.|+++|.||+||||+.+.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999964
No 475
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.81 E-value=0.063 Score=48.38 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.0
Q ss_pred EEEEeecCCCchHHHHHHHhCC
Q 012726 308 SVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.++++|.+|+|||||++.|.+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999863
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=90.80 E-value=0.12 Score=49.27 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=21.0
Q ss_pred eEEEEeecCCCchHHHHHHHhCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
-.++++|.+|+|||||++.|.|-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35799999999999999999995
No 477
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.80 E-value=0.13 Score=45.43 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.6
Q ss_pred eEEEEeecCCCchHHHHHHHhC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~ 328 (457)
..|++.|.||+||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999854
No 478
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.76 E-value=0.12 Score=50.25 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
-.++++|.+|+|||||++.|.|-.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 357999999999999999999854
No 479
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.76 E-value=0.13 Score=46.71 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
.+..|+++|.+|+||||+.+.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999875
No 480
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.73 E-value=0.15 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=21.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
++..|+++|.||+||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999964
No 481
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.66 E-value=0.12 Score=48.81 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.3
Q ss_pred eEEEEeecCCCchHHHHHHHhCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
-.++++|.+|+|||||++.|.|-.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 357999999999999999999854
No 482
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.66 E-value=0.13 Score=45.92 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.2
Q ss_pred EEEEeecCCCchHHHHHHHhC
Q 012726 308 SVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 308 ~v~vvG~pNvGKSSliN~L~~ 328 (457)
.|+++|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999975
No 483
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.66 E-value=0.15 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.1
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
.+..|++.|.||+||||+.+.|..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999999964
No 484
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.61 E-value=0.12 Score=51.18 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=21.4
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
++-.++++|.+|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 455789999999999999999985
No 485
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.61 E-value=0.12 Score=49.72 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3357999999999999999999854
No 486
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.53 E-value=0.18 Score=47.72 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999854
No 487
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.50 E-value=0.13 Score=49.37 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|..|+|||||++.|.|-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3358999999999999999999854
No 488
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.50 E-value=0.15 Score=45.79 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
+..|++.|.||+||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999964
No 489
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.48 E-value=0.13 Score=49.56 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+-.++++|.+|+|||||++.|.|-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 335899999999999999999995
No 490
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.46 E-value=0.13 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.8
Q ss_pred eEEEEeecCCCchHHHHHHHhCCCC
Q 012726 307 ISVGFVGYPNVGKSSVINTLRTKNV 331 (457)
Q Consensus 307 i~v~vvG~pNvGKSSliN~L~~~~~ 331 (457)
-.++++|.+|+|||||++.|.|-..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3579999999999999999998543
No 491
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.40 E-value=0.13 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.1
Q ss_pred ceEEEEeecCCCchHHHHHHHhC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
...|+++|.+|+||||+.+.|..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999964
No 492
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.39 E-value=0.13 Score=49.62 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458999999999999999999854
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.29 E-value=0.14 Score=49.30 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.7
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3358999999999999999999854
No 494
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=90.24 E-value=0.16 Score=45.37 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=21.5
Q ss_pred cceEEEEeecCCCchHHHHHHHhCC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
.+..|+++|.||+||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999998654
No 495
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.21 E-value=0.14 Score=50.57 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.3
Q ss_pred ccceEEEEeecCCCchHHHHHHHhC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
..+.-|+++|.+|+|||||++.|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567899999999999999999986
No 496
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.16 E-value=0.16 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.501 Sum_probs=21.0
Q ss_pred cceEEEEeecCCCchHHHHHHHhC
Q 012726 305 QAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 305 ~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
.+..|+++|.||+||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999854
No 497
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.15 E-value=0.11 Score=48.25 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+-.++++|.+|+|||||++.|.|-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 345899999999999999999986
No 498
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.15 E-value=0.18 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.7
Q ss_pred ccceEEEEeecCCCchHHHHHHHhC
Q 012726 304 KQAISVGFVGYPNVGKSSVINTLRT 328 (457)
Q Consensus 304 ~~~i~v~vvG~pNvGKSSliN~L~~ 328 (457)
..+..|+++|.|++||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999864
No 499
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.15 E-value=0.17 Score=45.38 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=21.4
Q ss_pred ceEEEEeecCCCchHHHHHHHhCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTK 329 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~ 329 (457)
+..|+++|.+|+||||+.+.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 467999999999999999999764
No 500
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.13 E-value=0.17 Score=48.49 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.8
Q ss_pred ceEEEEeecCCCchHHHHHHHhCCC
Q 012726 306 AISVGFVGYPNVGKSSVINTLRTKN 330 (457)
Q Consensus 306 ~i~v~vvG~pNvGKSSliN~L~~~~ 330 (457)
+-.++++|.+|+|||||++.|.|-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3458999999999999999999853
Done!