Query 012727
Match_columns 457
No_of_seqs 339 out of 3152
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:41:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00049 carboxyl-terminal pro 100.0 9.2E-55 2E-59 448.7 38.8 316 142-457 3-318 (389)
2 COG0793 Prc Periplasmic protea 100.0 4.1E-49 9E-54 406.7 32.0 265 182-457 58-326 (406)
3 PRK11186 carboxy-terminal prot 100.0 1.5E-47 3.3E-52 412.9 34.8 306 137-457 151-476 (667)
4 TIGR00225 prc C-terminal pepti 100.0 1.1E-43 2.5E-48 359.9 32.7 262 183-457 10-273 (334)
5 cd06567 Peptidase_S41 C-termin 100.0 6.4E-29 1.4E-33 238.1 20.5 181 148-457 1-183 (224)
6 cd07562 Peptidase_S41_TRI Tric 100.0 1.4E-28 3E-33 242.1 17.3 198 144-457 2-202 (266)
7 cd07563 Peptidase_S41_IRBP Int 99.9 6.3E-27 1.4E-31 228.2 19.8 182 148-457 2-196 (250)
8 smart00245 TSPc tail specific 99.9 2.3E-26 4.9E-31 215.8 18.1 148 303-457 3-151 (192)
9 cd07560 Peptidase_S41_CPP C-te 99.9 1.8E-24 4E-29 205.6 16.0 121 335-457 50-170 (211)
10 cd07561 Peptidase_S41_CPP_like 99.9 2E-24 4.3E-29 211.0 16.1 126 332-457 63-199 (256)
11 PF03572 Peptidase_S41: Peptid 99.9 1.4E-22 3E-27 184.9 11.6 122 334-457 1-129 (169)
12 COG3975 Predicted protease wit 99.7 3.4E-16 7.3E-21 161.2 12.1 170 111-310 353-522 (558)
13 PF13180 PDZ_2: PDZ domain; PD 99.3 1.1E-11 2.3E-16 100.1 10.2 79 225-309 2-81 (82)
14 cd00988 PDZ_CTP_protease PDZ d 99.2 2E-10 4.3E-15 92.8 11.7 82 223-310 1-83 (85)
15 PF14684 Tricorn_C1: Tricorn p 99.0 1.7E-10 3.6E-15 90.6 2.8 67 142-208 2-69 (70)
16 cd00991 PDZ_archaeal_metallopr 99.0 4.8E-09 1E-13 84.1 9.8 68 240-309 9-77 (79)
17 cd00989 PDZ_metalloprotease PD 98.9 5.9E-09 1.3E-13 82.9 9.2 76 226-309 3-78 (79)
18 cd00136 PDZ PDZ domain, also c 98.9 4.4E-09 9.5E-14 81.7 8.2 68 225-297 2-69 (70)
19 cd00990 PDZ_glycyl_aminopeptid 98.9 8.5E-09 1.9E-13 82.3 9.4 75 226-310 3-77 (80)
20 cd00986 PDZ_LON_protease PDZ d 98.8 3.7E-08 8.1E-13 78.7 9.8 69 241-312 8-77 (79)
21 PF00595 PDZ: PDZ domain (Also 98.7 3.2E-08 7E-13 79.4 6.7 72 224-298 10-81 (81)
22 cd00987 PDZ_serine_protease PD 98.6 1.4E-07 3E-12 76.7 8.1 66 240-307 23-89 (90)
23 smart00228 PDZ Domain present 98.5 5.2E-07 1.1E-11 72.1 9.0 74 224-301 12-85 (85)
24 cd00992 PDZ_signaling PDZ doma 98.5 5.6E-07 1.2E-11 71.8 8.3 70 224-297 12-81 (82)
25 PF14685 Tricorn_PDZ: Tricorn 98.5 1.1E-06 2.4E-11 71.8 9.2 75 226-308 3-88 (88)
26 TIGR00054 RIP metalloprotease 98.4 1.2E-06 2.7E-11 91.9 8.9 69 241-311 203-271 (420)
27 PRK10139 serine endoprotease; 98.4 1.4E-06 3.1E-11 92.2 9.4 69 240-310 289-358 (455)
28 TIGR02038 protease_degS peripl 98.3 1.6E-06 3.4E-11 89.0 9.0 69 241-311 278-347 (351)
29 PRK10898 serine endoprotease; 98.3 1.9E-06 4.1E-11 88.5 9.4 70 241-312 279-349 (353)
30 TIGR01713 typeII_sec_gspC gene 98.3 2.2E-06 4.8E-11 84.1 8.8 67 241-309 191-258 (259)
31 PRK10779 zinc metallopeptidase 98.3 2.2E-06 4.7E-11 90.8 9.1 68 242-311 222-289 (449)
32 TIGR02037 degP_htrA_DO peripla 98.3 3.1E-06 6.8E-11 89.1 9.3 69 241-311 257-326 (428)
33 PRK10942 serine endoprotease; 98.2 6.1E-06 1.3E-10 87.9 9.4 71 240-312 310-381 (473)
34 PRK10779 zinc metallopeptidase 98.2 2.7E-06 5.8E-11 90.2 6.4 66 243-310 128-194 (449)
35 TIGR02860 spore_IV_B stage IV 98.0 2.5E-05 5.4E-10 80.6 10.1 68 241-310 105-180 (402)
36 TIGR02037 degP_htrA_DO peripla 98.0 1.5E-05 3.2E-10 84.0 8.3 65 241-307 362-427 (428)
37 PRK10139 serine endoprotease; 98.0 1.8E-05 4E-10 83.8 8.8 65 241-308 390-454 (455)
38 PF04495 GRASP55_65: GRASP55/6 97.9 3.5E-05 7.6E-10 68.5 7.7 86 224-311 26-114 (138)
39 PRK10942 serine endoprotease; 97.9 3.8E-05 8.2E-10 81.9 8.6 65 241-308 408-472 (473)
40 TIGR03279 cyano_FeS_chp putati 97.9 2.5E-05 5.3E-10 81.2 6.7 62 245-311 2-64 (433)
41 KOG3129 26S proteasome regulat 97.6 0.00014 3E-09 67.8 7.3 71 242-312 140-211 (231)
42 TIGR00054 RIP metalloprotease 97.6 6.5E-05 1.4E-09 79.0 5.4 65 241-308 128-192 (420)
43 COG0265 DegQ Trypsin-like seri 97.5 0.00035 7.6E-09 71.5 9.4 71 240-312 269-340 (347)
44 KOG3553 Tax interaction protei 97.5 6.8E-05 1.5E-09 61.7 3.1 48 239-286 57-104 (124)
45 KOG3550 Receptor targeting pro 97.5 0.00029 6.3E-09 62.3 7.2 71 224-298 101-172 (207)
46 KOG3209 WW domain-containing p 97.5 0.00017 3.7E-09 77.3 6.5 74 223-301 764-838 (984)
47 KOG3209 WW domain-containing p 97.0 0.002 4.4E-08 69.4 7.9 78 222-300 353-432 (984)
48 COG3480 SdrC Predicted secrete 96.8 0.0059 1.3E-07 60.6 8.9 68 242-312 131-200 (342)
49 PRK09681 putative type II secr 96.8 0.0075 1.6E-07 59.5 9.7 54 254-309 220-274 (276)
50 KOG3605 Beta amyloid precursor 96.6 0.0028 6.2E-08 67.7 5.6 87 225-312 658-746 (829)
51 KOG1421 Predicted signaling-as 96.5 0.0076 1.7E-07 65.0 7.9 69 241-312 303-371 (955)
52 KOG3549 Syntrophins (type gamm 96.5 0.0044 9.6E-08 61.8 5.6 73 222-298 64-137 (505)
53 KOG1892 Actin filament-binding 96.2 0.011 2.3E-07 65.9 7.1 77 224-301 943-1020(1629)
54 KOG3580 Tight junction protein 96.2 0.0081 1.8E-07 63.8 6.0 57 241-297 429-486 (1027)
55 KOG3552 FERM domain protein FR 96.1 0.0088 1.9E-07 66.3 5.6 67 222-299 65-131 (1298)
56 KOG3651 Protein kinase C, alph 96.0 0.013 2.8E-07 57.6 6.0 68 226-297 18-86 (429)
57 cd07021 Clp_protease_NfeD_like 95.7 0.065 1.4E-06 49.7 9.1 69 346-441 13-81 (178)
58 KOG3542 cAMP-regulated guanine 95.5 0.01 2.3E-07 63.8 3.2 58 239-298 560-617 (1283)
59 KOG3551 Syntrophins (type beta 95.4 0.019 4.1E-07 58.3 4.6 71 223-297 95-166 (506)
60 KOG3532 Predicted protein kina 95.2 0.036 7.9E-07 59.8 6.4 65 224-295 386-450 (1051)
61 KOG1320 Serine protease [Postt 95.2 0.063 1.4E-06 56.7 7.9 68 242-311 399-467 (473)
62 KOG3571 Dishevelled 3 and rela 94.8 0.047 1E-06 57.2 5.5 74 225-299 262-338 (626)
63 KOG3580 Tight junction protein 94.7 0.082 1.8E-06 56.5 7.2 77 224-302 20-99 (1027)
64 COG3031 PulC Type II secretory 94.7 0.065 1.4E-06 51.3 5.8 59 248-308 214-273 (275)
65 KOG0609 Calcium/calmodulin-dep 94.3 0.092 2E-06 55.7 6.4 69 225-299 135-204 (542)
66 KOG3606 Cell polarity protein 93.1 0.32 6.9E-06 47.4 7.3 61 241-302 194-255 (358)
67 cd07020 Clp_protease_NfeD_1 No 93.0 0.72 1.6E-05 43.0 9.5 69 345-440 12-83 (187)
68 KOG0606 Microtubule-associated 92.8 0.16 3.4E-06 58.2 5.5 54 243-297 660-713 (1205)
69 PF12812 PDZ_1: PDZ-like domai 92.0 0.31 6.7E-06 39.0 4.8 42 243-286 32-73 (78)
70 KOG3834 Golgi reassembly stack 90.6 0.56 1.2E-05 48.6 6.2 83 226-311 94-180 (462)
71 COG0750 Predicted membrane-ass 90.2 0.91 2E-05 46.7 7.6 57 245-303 133-193 (375)
72 KOG3605 Beta amyloid precursor 89.6 0.28 6E-06 53.1 3.2 47 244-290 759-805 (829)
73 cd00394 Clp_protease_like Case 89.3 1.9 4.1E-05 38.7 8.1 67 346-439 11-78 (161)
74 KOG1738 Membrane-associated gu 89.0 0.5 1.1E-05 51.1 4.6 60 223-287 212-272 (638)
75 cd07015 Clp_protease_NfeD Nodu 88.2 2.3 4.9E-05 39.3 7.8 71 345-442 12-85 (172)
76 KOG3834 Golgi reassembly stack 87.9 0.91 2E-05 47.1 5.4 68 241-310 15-85 (462)
77 TIGR00706 SppA_dom signal pept 84.4 7.1 0.00015 36.9 9.3 68 347-439 14-82 (207)
78 cd07016 S14_ClpP_1 Caseinolyti 84.0 2.7 5.9E-05 37.8 6.1 66 346-440 15-80 (160)
79 KOG3938 RGS-GAIP interacting p 83.9 2.2 4.8E-05 41.7 5.6 68 226-298 139-208 (334)
80 COG1030 NfeD Membrane-bound se 80.5 12 0.00026 39.4 9.8 61 333-394 26-87 (436)
81 PRK14512 ATP-dependent Clp pro 77.6 9.6 0.00021 35.9 7.6 81 333-441 23-104 (197)
82 PF11874 DUF3394: Domain of un 77.3 2.7 5.8E-05 39.1 3.6 38 226-269 113-150 (183)
83 KOG2921 Intramembrane metallop 77.2 3.6 7.8E-05 42.5 4.7 45 240-286 219-264 (484)
84 cd07014 S49_SppA Signal peptid 76.9 10 0.00022 34.8 7.4 69 347-439 23-92 (177)
85 cd07013 S14_ClpP Caseinolytic 76.9 7.3 0.00016 35.4 6.4 44 345-389 11-55 (162)
86 COG0616 SppA Periplasmic serin 76.3 5.6 0.00012 40.3 6.0 69 348-441 82-151 (317)
87 PRK12553 ATP-dependent Clp pro 75.0 12 0.00027 35.4 7.6 80 334-441 36-116 (207)
88 PF01972 SDH_sah: Serine dehyd 72.7 19 0.0004 35.8 8.3 65 347-440 76-140 (285)
89 cd07023 S49_Sppa_N_C Signal pe 72.3 24 0.00051 33.2 8.9 71 345-439 16-87 (208)
90 cd07017 S14_ClpP_2 Caseinolyti 70.4 14 0.0003 33.8 6.6 43 346-389 21-64 (171)
91 cd07022 S49_Sppa_36K_type Sign 69.5 21 0.00045 33.8 7.9 70 345-439 24-94 (214)
92 PF00574 CLP_protease: Clp pro 67.5 9 0.0002 35.2 4.8 81 334-442 17-98 (182)
93 cd07019 S49_SppA_1 Signal pept 66.6 33 0.00071 32.5 8.5 69 347-439 22-91 (211)
94 KOG1421 Predicted signaling-as 58.5 25 0.00054 39.0 6.6 69 239-310 860-930 (955)
95 PRK00277 clpP ATP-dependent Cl 51.3 50 0.0011 31.1 6.8 79 333-439 31-110 (200)
96 TIGR00493 clpP ATP-dependent C 51.0 51 0.0011 30.8 6.8 42 346-388 38-80 (191)
97 PRK12551 ATP-dependent Clp pro 44.4 60 0.0013 30.5 6.1 80 333-440 25-105 (196)
98 cd07041 STAS_RsbR_RsbS_like Su 41.3 59 0.0013 26.7 5.1 45 334-378 10-56 (109)
99 PRK07854 enoyl-CoA hydratase; 39.1 1.7E+02 0.0037 28.2 8.6 89 333-439 8-107 (243)
100 cd07043 STAS_anti-anti-sigma_f 36.5 1.6E+02 0.0036 23.0 6.9 53 334-386 8-61 (99)
101 PRK14513 ATP-dependent Clp pro 35.3 1.4E+02 0.0031 28.2 7.1 80 333-440 27-107 (201)
102 TIGR00705 SppA_67K signal pept 35.0 2.1E+02 0.0045 31.7 9.4 85 331-439 306-399 (584)
103 CHL00028 clpP ATP-dependent Cl 33.6 1.4E+02 0.0031 28.1 6.9 55 333-389 30-85 (200)
104 PRK11778 putative inner membra 31.9 2.4E+02 0.0052 28.9 8.6 84 333-440 90-176 (330)
105 PRK10949 protease 4; Provision 31.7 2.7E+02 0.0059 31.0 9.6 56 332-388 325-389 (618)
106 PF04343 DUF488: Protein of un 30.5 78 0.0017 27.0 4.2 29 351-380 2-34 (122)
107 TIGR00377 ant_ant_sig anti-ant 29.0 2E+02 0.0043 23.3 6.3 48 333-380 11-60 (108)
108 PF01740 STAS: STAS domain; I 28.0 1.7E+02 0.0036 24.2 5.8 65 333-397 8-85 (117)
109 PRK14514 ATP-dependent Clp pro 24.7 1.6E+02 0.0036 28.2 5.6 80 333-440 54-134 (221)
110 TIGR02886 spore_II_AA anti-sig 24.4 3.5E+02 0.0076 21.8 7.0 48 333-380 7-56 (106)
111 cd06844 STAS Sulphate Transpor 23.8 2E+02 0.0043 23.2 5.3 46 333-378 7-54 (100)
112 PRK06688 enoyl-CoA hydratase; 22.8 82 0.0018 30.5 3.3 98 333-439 13-117 (259)
113 cd07560 Peptidase_S41_CPP C-te 22.3 1.4E+02 0.0031 28.2 4.7 43 147-209 7-49 (211)
114 KOG4371 Membrane-associated pr 22.0 91 0.002 36.5 3.7 70 224-298 1257-1327(1332)
115 PRK06494 enoyl-CoA hydratase; 20.2 1.4E+02 0.0031 29.0 4.4 91 333-439 12-115 (259)
116 cd07042 STAS_SulP_like_sulfate 20.2 4.2E+02 0.0091 20.9 6.7 49 332-380 7-58 (107)
No 1
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=100.00 E-value=9.2e-55 Score=448.72 Aligned_cols=316 Identities=82% Similarity=1.279 Sum_probs=274.5
Q ss_pred chhhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCC
Q 012727 142 SEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQG 221 (457)
Q Consensus 142 ~~~~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~ 221 (457)
++++++|+++|+.++++|||+.++|+||+++++.|++...+++.++++.++.+|+++|+|||+.|++++++..+.....+
T Consensus 3 ~~~~~~f~e~w~~v~~~~~d~~~~g~dW~~~~e~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~y~~~~~~~~~~~~~~~ 82 (389)
T PLN00049 3 TEENLLFLEAWRTVDRAYVDKTFNGQSWFRYRENALKNEPMNTREETYAAIRKMLATLDDPFTRFLEPEKFKSLRSGTKG 82 (389)
T ss_pred ccHHHHHHHHHHHHHHHHcCccccccCHHHHHHHHhhccCCCcHHHHHHHHHHHHhhCCCCcccCcCHHHHHHHHHhccC
Confidence 57899999999999999999999999999999999987777888899999999999999999999999998877666678
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.+.|+|+.+...........+++|..|.++|||+++||++||+|++|||+++.+++..++...+++..|+.+.|++.|++
T Consensus 83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 88999999876421111112789999999999999999999999999999999887777778888889999999999999
Q ss_pred eEEEEEEEeeccccCcccccccccCCCCCCCCcEEEEEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHH
Q 012727 302 EIRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEG 381 (457)
Q Consensus 302 ~~~~vtl~r~~~~~~~v~~~~~~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a 381 (457)
+..++++++..+..+|+..+.......+..+++||||+|++|...+.+++.+++++++++++++||||||+|+||.+..+
T Consensus 163 ~~~~~~l~r~~v~~~~v~~~~~~~~~~~~~~~~IgYi~i~~F~~~~~~~~~~~l~~l~~~~~~glIlDLR~N~GG~~~~a 242 (389)
T PLN00049 163 ETRLVTLTREKVSLNPVKSRLCEVPGPGAGSPKIGYIKLTTFNQNASSAVKEAIETLRANGVDAFVLDLRDNSGGLFPAG 242 (389)
T ss_pred EEEEEEEEeeeEeccceeeEEEeeccccCCCCCEEEEEeccccchhHHHHHHHHHHHHHCCCCEEEEEcCCCCCCCHHHH
Confidence 99999999998888888765543111122346899999999999899999999999998999999999999999999999
Q ss_pred HHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 382 IEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 382 ~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
..++++|++++.+++...+.+..+.+...+.....+.+|++||||+.||||||+|+.+||+++++++||++|+|||
T Consensus 243 ~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PvvVLvn~~TaSasEi~a~alk~~~~~~vvG~~T~Gkg 318 (389)
T PLN00049 243 IEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPLAVLVNKGTASASEILAGALKDNKRAVVLGEPTFGKG 318 (389)
T ss_pred HHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCEEEEECCCCccHHHHHHHHHhhCCCeEEEecCCcCCc
Confidence 9999999999998877666665555554443334578999999999999999999999999999999999999997
No 2
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.1e-49 Score=406.66 Aligned_cols=265 Identities=36% Similarity=0.624 Sum_probs=239.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCC
Q 012727 182 MNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILS 261 (457)
Q Consensus 182 ~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~ 261 (457)
.+....++.++.+|++.|.|||+.|+++++++.+...+.+++.|+|+.+.... .+.+.|.++++|+||++|||++
T Consensus 58 ~~~~~l~~~ai~g~ls~l~Dp~s~y~~~e~~~~~~~~~~~~~~GiG~~i~~~~-----~~~~~V~s~~~~~PA~kagi~~ 132 (406)
T COG0793 58 VDSDKLFEGAIEGMLSSLGDPHSTYLDPEDAAEFRTDTSGEFGGIGIELQMED-----IGGVKVVSPIDGSPAAKAGIKP 132 (406)
T ss_pred ccHHHHHHHHHHHHHHhcCCCcccccCHHHHHHhhhhccccccceeEEEEEec-----CCCcEEEecCCCChHHHcCCCC
Confidence 34567788999999999999999999999999999999999999999998762 1789999999999999999999
Q ss_pred CCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC--CeEEEEEEEeeccccCccccc--ccccCCCCCCCCcEEE
Q 012727 262 GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG--AEIRHLALTREKVSLNPVKSR--LCVVPGPGKSSPRIGY 337 (457)
Q Consensus 262 GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~--g~~~~vtl~r~~~~~~~v~~~--~~~~~~~~~~~~~igY 337 (457)
||.|++|||+++.+...++++..+++++|+.|+|++.|. ++.++++++|+.+.+.++.+. +.+ ..+++|||
T Consensus 133 GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~~~~k~~~v~l~Re~i~l~~v~~~~~~~~-----~~~~~IGy 207 (406)
T COG0793 133 GDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRAGGGKPFTVTLTREEIELEDVAAKEKVEE-----GGKGRIGY 207 (406)
T ss_pred CCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEcCCCceeEEEEEEEEEeccceeeeeeeec-----CCCceEEE
Confidence 999999999999999888899999999999999999885 678999999999998888776 332 22345999
Q ss_pred EEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCC
Q 012727 338 IKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAA 417 (457)
Q Consensus 338 i~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (457)
|||++|+..+.++++.++.+|+++++++||||||+|+||.+++++.++++|++++.+++++.+.|....+...... ..+
T Consensus 208 I~I~~F~~~~~~~~~~al~~L~~~~~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~-~~~ 286 (406)
T COG0793 208 IRIPSFGEGTYEDLEKALDELKKQGAKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGE-ALY 286 (406)
T ss_pred EEecccccchHHHHHHHHHHHHhcCCcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccc-cCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999876555433222 268
Q ss_pred CCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 418 SEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 418 ~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
++|++||||++||||+|+||++||+++||+|||++|+|||
T Consensus 287 ~~PlvvLvn~~SASAsEI~agalqd~~ra~lVG~~TfGkg 326 (406)
T COG0793 287 DGPLVVLVNEGSASASEIFAGALQDYGRATLVGETTFGKG 326 (406)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHHcCCcEEEecccccce
Confidence 9999999999999999999999999999999999999998
No 3
>PRK11186 carboxy-terminal protease; Provisional
Probab=100.00 E-value=1.5e-47 Score=412.85 Aligned_cols=306 Identities=26% Similarity=0.483 Sum_probs=256.2
Q ss_pred CccccchhhHHHHHHHH-HHHHHcCCCCCCCCChHHHHH----Hhhc----cCCCCCHHHHHHHHHHHHHhcCCCCcccc
Q 012727 137 PSLALSEENRLFLEAWR-TIDRAYVDKTFNGQSWFRYRE----NALR----NEPMNTREETYMAIRKMLATLDDPFTRFL 207 (457)
Q Consensus 137 ~~~~~~~~~~~fd~v~r-~l~~~Y~d~~~~g~dw~~~~~----~~~~----~~~~~~~~ef~~ai~~~l~~L~DpHt~~l 207 (457)
.+|+.++ ..++++|+ .++++|.+..++|.+|+++++ .|.. ....+..+.|..++..|+..+ |||+.|+
T Consensus 151 ~~w~~~~--~el~~~W~k~vk~~~l~~~~~g~~w~~i~~~l~krY~~~l~~~~~~~~~d~~~~~i~~m~~~l-DphT~Y~ 227 (667)
T PRK11186 151 APWPKDE--AELNELWDQRVKYDALNLKLTGKTWPEIKETLTKRYNFAIKRLTQTNSEDVFQLAMNAFAREI-DPHTSYL 227 (667)
T ss_pred CCCcCCH--HHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhCC-CCCcccc
Confidence 4676544 45799999 699999999999999998874 3322 122333444678888888888 9999999
Q ss_pred ChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEEC--CE---ecCCCCHHHH
Q 012727 208 EPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAID--DT---STESMGIYDA 281 (457)
Q Consensus 208 ~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaId--G~---~v~~~~~~~~ 281 (457)
+|.+++.+.....+.+.|+|+.+... ++.++|.+|++||||+++ ||++||+|++|| |. ++.+|..+++
T Consensus 228 sp~e~e~f~~~~~~~~~GIGa~l~~~------~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~v 301 (667)
T PRK11186 228 SPRNAEQFNTEMNLSLEGIGAVLQMD------DDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDV 301 (667)
T ss_pred ChHHHHHhhhccCCceeEEEEEEEEe------CCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHH
Confidence 99999888777788899999999766 467899999999999998 999999999999 43 4557778889
Q ss_pred HHHhcCCCCCcEEEEEEe---CCeEEEEEEEeeccccC--cccccccccCCCCCCCCcEEEEEEeccCcchHHHHHHHHH
Q 012727 282 AERLQGPEGSPVELTVRS---GAEIRHLALTREKVSLN--PVKSRLCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAID 356 (457)
Q Consensus 282 ~~~l~~~~G~~v~L~v~r---~g~~~~vtl~r~~~~~~--~v~~~~~~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~ 356 (457)
..+++|+.|++|+|+|.| +++.++++++|..+... ++...+.+ ..+++||||+|++|..+..+++.+++.
T Consensus 302 v~lirG~~Gt~V~LtV~r~~~~~~~~~vtl~R~~i~l~~~~~k~~v~~-----~~~~kIGYI~I~sF~~~~~~d~~~~l~ 376 (667)
T PRK11186 302 VALIKGPKGSKVRLEILPAGKGTKTRIVTLTRDKIRLEDRAVKMSVKT-----VGGEKVGVLDIPGFYVGLTDDVKKQLQ 376 (667)
T ss_pred HHHhcCCCCCEEEEEEEeCCCCCceEEEEEEeeeecccccceEEEEEe-----cCCCcEEEEEecccccchHHHHHHHHH
Confidence 999999999999999987 35688999999887653 34444443 234689999999999988999999999
Q ss_pred HHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHH
Q 012727 357 TLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEIL 436 (457)
Q Consensus 357 ~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~ 436 (457)
+++++++++||||||+|+||.+.++..++++|++++.+++.+++.|....+.. ......|.+|++||||+.||||||+|
T Consensus 377 ~l~~~~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~-~~~~~~~~gPlvVLVN~~SASASEIf 455 (667)
T PRK11186 377 KLEKQNVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSD-TDGVVYYKGPLVVLVDRYSASASEIF 455 (667)
T ss_pred HHHHCCCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceecccc-CCcccccCCCEEEEeCCCCccHHHHH
Confidence 99999999999999999999999999999999999998887776665443321 22335789999999999999999999
Q ss_pred HHHHhcCCCeEEEccCCCCCC
Q 012727 437 AGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 437 a~~lk~~~~a~vVG~~T~GkG 457 (457)
|++||+++||++||++|+|||
T Consensus 456 A~alqd~~ra~vVG~~T~GKG 476 (667)
T PRK11186 456 AAAMQDYGRALIVGEPTFGKG 476 (667)
T ss_pred HHHHHhcCCEEEEeccCCCcc
Confidence 999999999999999999998
No 4
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=100.00 E-value=1.1e-43 Score=359.94 Aligned_cols=262 Identities=39% Similarity=0.712 Sum_probs=226.2
Q ss_pred CCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCC
Q 012727 183 NTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSG 262 (457)
Q Consensus 183 ~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~G 262 (457)
++.++++.++.+|+++|+|||+.|+++++++.+.....+...++|+.+... +++++|..|.++|||+++||++|
T Consensus 10 ~~~~~~~~~l~~m~~~l~D~h~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~------~~~~~V~~V~~~spA~~aGL~~G 83 (334)
T TIGR00225 10 DETEEIYGAIKGMLASLNDPYTRYLSPETAKSFSETTSGSLEGIGIQVGMD------DGEIVIVSPFEGSPAEKAGIKPG 83 (334)
T ss_pred ccHHHHHHHHHHHHHhCCCCCccccCHHHHHHHHHhccCceEEEEEEEEEE------CCEEEEEEeCCCChHHHcCCCCC
Confidence 345689999999999999999999999988776655667788999998765 46899999999999999999999
Q ss_pred CEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe--EEEEEEEeeccccCcccccccccCCCCCCCCcEEEEEE
Q 012727 263 DVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE--IRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKL 340 (457)
Q Consensus 263 D~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~--~~~vtl~r~~~~~~~v~~~~~~~~~~~~~~~~igYi~i 340 (457)
|+|++|||+++.+++..++...+.+..|+.+.+++.|+++ ..++++++..+..+++..++.+ ..+++||||+|
T Consensus 84 D~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~l~~~~~~~~~v~~~~~~-----~~~~~igYi~i 158 (334)
T TIGR00225 84 DKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGKSKPLTFTLKRDRIELQTVKASVKK-----VGGKSVGYIRI 158 (334)
T ss_pred CEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCCCceEEEEEEEEEeeccceEEEEEc-----CCCcEEEEEEE
Confidence 9999999999999877777778887889999999999865 4566677777766777665443 33568999999
Q ss_pred eccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCc
Q 012727 341 TSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEP 420 (457)
Q Consensus 341 ~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp 420 (457)
++|..+..+++.+++++++++++++||||||+|+||++..+..++++|++++.+++.+.+++....+...+ ...+++|
T Consensus 159 ~~f~~~~~~~~~~~l~~l~~~~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~p 236 (334)
T TIGR00225 159 SSFSEHTTEDVKKALDKLEKKNAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANG--RQPYNLP 236 (334)
T ss_pred EecccchHHHHHHHHHHHHhccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCC--CccCCCC
Confidence 99999889999999999988899999999999999999999999999999998888777766544444332 2368999
Q ss_pred EEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 421 LAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 421 vvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
++||||+.|+||||+||++||+++++++||++|+|||
T Consensus 237 v~vLvn~~TaSaaE~~a~~l~~~~~a~viG~~T~G~~ 273 (334)
T TIGR00225 237 LVVLVNRGSASASEIFAGALQDNGRATIVGEKTFGKG 273 (334)
T ss_pred EEEEECCCCCcHHHHHHHHHHhCCCeEEEeeCCccCc
Confidence 9999999999999999999999999999999999986
No 5
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=99.96 E-value=6.4e-29 Score=238.05 Aligned_cols=181 Identities=41% Similarity=0.690 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCCceeee
Q 012727 148 FLEAWRTIDRAYVDKTFNGQSWFRYRENALRN-EPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGV 226 (457)
Q Consensus 148 fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~-~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~~gl 226 (457)
|+++|+.+.+.|+++ ++.+|..++..+... ...++.++++.++.+|+.+|+|+|+.+..
T Consensus 1 ~~~~~~~~~~~y~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~D~hs~~~~------------------ 60 (224)
T cd06567 1 FDEAWRLLRENYYDP--HGVDWDALRDRYVDLLDAVDDRELLAGALNGMLGELGDPHSRYLT------------------ 60 (224)
T ss_pred CHHHHHHHHHHhccc--chhHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHhCCCCCceeEE------------------
Confidence 478999999999988 899999999988865 34677899999999999999999998754
Q ss_pred eEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEE
Q 012727 227 GLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHL 306 (457)
Q Consensus 227 Gi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~v 306 (457)
T Consensus 61 -------------------------------------------------------------------------------- 60 (224)
T cd06567 61 -------------------------------------------------------------------------------- 60 (224)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEeeccccCcccccccccCCCCCCCCcEEEEEEeccC-cchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHH
Q 012727 307 ALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKLTSFN-QNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIA 385 (457)
Q Consensus 307 tl~r~~~~~~~v~~~~~~~~~~~~~~~~igYi~i~sF~-~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~ 385 (457)
||||+|++|. ....+.+.+++..+++ ++++||||||+|+||++..+..++
T Consensus 61 ----------------------------igYi~i~~f~~~~~~~~~~~~~~~~~~-~~~~lIiDLR~N~GG~~~~a~~l~ 111 (224)
T cd06567 61 ----------------------------IGYIRIPSFSAESTAEELREALAELKK-GVKGLILDLRNNPGGLLSAAVELA 111 (224)
T ss_pred ----------------------------eEEEEECccCCcchHHHHHHHHHHHHc-CCCEEEEEcCCCCCccHHHHHHHH
Confidence 6899999998 6778888999998877 899999999999999999999999
Q ss_pred HhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 386 KIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 386 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
++|++++..+......+..............+.+|++||||+.|+||||+|+.+||+++++++||++|+|++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~taSaaE~~a~~lk~~~~~~vvG~~T~G~~ 183 (224)
T cd06567 112 SLFLPKGKIVVTTRRRGGNETEYVAPGGGSLYDGPLVVLVNEGSASASEIFAGALQDLGRATLVGERTFGKG 183 (224)
T ss_pred HHhcCCCcEEEEEecCCCceeEEecCCCCcccCCCEEEEECCCCccHHHHHHHHHHhCCCeEEEeeCCCCCC
Confidence 999999987766543332111111223345789999999999999999999999999999999999999986
No 6
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=99.96 E-value=1.4e-28 Score=242.12 Aligned_cols=198 Identities=25% Similarity=0.313 Sum_probs=145.8
Q ss_pred hhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCCc
Q 012727 144 ENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRN-EPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGA 222 (457)
Q Consensus 144 ~~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~-~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~ 222 (457)
..+.||++|+.+.++|++++++|+||+++++++.+. ..+.+..+|+..+.+|+++|+|+|+.+...
T Consensus 2 ~~~~fd~~w~~~~~~y~~~~~~g~dW~~~~~~y~~~~~~~~~~~e~~~~l~~ml~~L~d~H~~~~~~------------- 68 (266)
T cd07562 2 WLQMFDEAWRLVRDNFYDPDMHGVDWDAVRAEYRPLLPRAATRAELADVLNEMLGELNDSHTGVSGL------------- 68 (266)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCCHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHcCCccchHHH-------------
Confidence 467899999999999999999999999999999864 567889999999999999999999876530
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
...+....
T Consensus 69 ------------------------------------------------------~~~~~~~~------------------ 76 (266)
T cd07562 69 ------------------------------------------------------RYRDWVES------------------ 76 (266)
T ss_pred ------------------------------------------------------HHHHHHHH------------------
Confidence 00000000
Q ss_pred EEEEEEEeeccccCcccccccccCCCCCCCCcEEEEEEeccCcchHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHH
Q 012727 303 IRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEG 381 (457)
Q Consensus 303 ~~~vtl~r~~~~~~~v~~~~~~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a 381 (457)
. . ..+. ...+++||||+|++|... .+.++++++... .+++||||||+|+||++.
T Consensus 77 -------~-~---~~~~---------~~~~~~igYi~i~~~~~~---~~~~~~~~~~~~~~~~glIiDlR~N~GG~~~-- 131 (266)
T cd07562 77 -------N-R---EYVE---------ELSDGRIGYVHIPDMGDD---GFAEFLRDLLAEVDKDGLIIDVRFNGGGNVA-- 131 (266)
T ss_pred -------H-H---HHHH---------HhcCCcEEEEEeCCCChH---HHHHHHHHHHhcCCCceEEEEecCCCCCcHH--
Confidence 0 0 0000 012359999999999654 355555554432 389999999999999954
Q ss_pred HHHHHhhhCCCcEEEEEcCC-CceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 382 IEIAKIWLDKGVIVYICDSR-GVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 382 ~~l~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
..+++.|... ...+...+. +... ..+. ..|++||+||||+.|+||||+|+.+||+++++++||++|+|++
T Consensus 132 ~~l~~~~~~~-~~~~~~~r~~~~~~---~~p~--~~~~~pv~vL~~~~t~SaaE~~a~~lk~~~~~~vvG~~T~G~~ 202 (266)
T cd07562 132 DLLLDFLSRR-RYGYDIPRGGGKPV---TYPS--GRWRGPVVVLVNEGSASDAEIFAYGFRALGLGPVVGTRTAGGV 202 (266)
T ss_pred HHHHHHhCCC-ceEEEccCCCCCCC---CCcc--cccCCCEEEEECCCCCchHHHHHHHHHHcCCeeEEeeccCCce
Confidence 4677777554 344444333 2211 1111 2389999999999999999999999999999999999999985
No 7
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=99.95 E-value=6.3e-27 Score=228.23 Aligned_cols=182 Identities=26% Similarity=0.326 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCChHHHHHHhhccC--CCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCCceee
Q 012727 148 FLEAWRTIDRAYVDKTFNGQSWFRYRENALRNE--PMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTG 225 (457)
Q Consensus 148 fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~~--~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~~g 225 (457)
|+.+|+.+.++|+++..++++|.++++.+.+.. ...+.++|+..+.+|+..++|+|..+..
T Consensus 2 ~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~l~D~H~~~~~----------------- 64 (250)
T cd07563 2 FEALAKLLEENYAFPEAKGIDWDALAARLRAQVYLDITSPEELAAVLTADLQELGDGHLNVSY----------------- 64 (250)
T ss_pred HHHHHHHHHHhCCChHHcccHHHHHHHHHhccccccCCCHHHHHHHHHHhhhccCCCcEEEEE-----------------
Confidence 789999999999999999999999999998654 4677899999999999999999987542
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRH 305 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~ 305 (457)
T Consensus 65 -------------------------------------------------------------------------------- 64 (250)
T cd07563 65 -------------------------------------------------------------------------------- 64 (250)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEeeccccCcccccccccCCCCCCCCcEEEEEEeccCc----chHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHH
Q 012727 306 LALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKLTSFNQ----NASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEG 381 (457)
Q Consensus 306 vtl~r~~~~~~~v~~~~~~~~~~~~~~~~igYi~i~sF~~----~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a 381 (457)
||||+|++|.. ...+.++++++.+++ .++||||||+|+||+...+
T Consensus 65 -----------------------------IgYl~i~~f~~~~~~~~~~~~~~~~~~l~~--~~~LIIDLR~N~GG~~~~~ 113 (250)
T cd07563 65 -----------------------------IGYLRIDSFGGFEIAAAEALLDEALDKLAD--TDALIIDLRYNGGGSDSLV 113 (250)
T ss_pred -----------------------------eEEEEEcccCChhhhhhHHHHHHHHHHhcC--CCeEEEEECCCCCCCHHHH
Confidence 68999999986 356678888888864 5999999999999999999
Q ss_pred HHHHHhhhCCCc--EEEE-EcCCCceee----EeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCC
Q 012727 382 IEIAKIWLDKGV--IVYI-CDSRGVRDI----YDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTY 454 (457)
Q Consensus 382 ~~l~~~f~~~~~--~~~~-~~~~~~~~~----~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~ 454 (457)
..++++|++++. .++. ..+.+.... ....+.....+++||+||||+.|+||||+|+.+||+++++++||++|+
T Consensus 114 ~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~a~~lk~~~~~~viGe~T~ 193 (250)
T cd07563 114 AYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEFAYALKQLKRATVVGETTA 193 (250)
T ss_pred HHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHHHHHHHhCCCcEEEeecCC
Confidence 999999996443 2232 222222110 112223345789999999999999999999999999999999999999
Q ss_pred CCC
Q 012727 455 GKG 457 (457)
Q Consensus 455 GkG 457 (457)
|++
T Consensus 194 G~~ 196 (250)
T cd07563 194 GGA 196 (250)
T ss_pred CCC
Confidence 985
No 8
>smart00245 TSPc tail specific protease. tail specific protease
Probab=99.94 E-value=2.3e-26 Score=215.76 Aligned_cols=148 Identities=43% Similarity=0.710 Sum_probs=123.0
Q ss_pred EEEEEEEeeccccCcccccccccCCCCCCCCcEEEEEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHH
Q 012727 303 IRHLALTREKVSLNPVKSRLCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGI 382 (457)
Q Consensus 303 ~~~vtl~r~~~~~~~v~~~~~~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~ 382 (457)
..++.|+|..+..+++.+.+... ..++||||+|++|...+.++++++++++++.++++||||||+|+||.+..+.
T Consensus 3 ~~~~~~~r~~~~~~~~~~~~~~~-----~~~~igYi~i~~f~~~~~~~~~~~~~~l~~~~~~~lIiDLR~N~GG~~~~~~ 77 (192)
T smart00245 3 ERTIALIRAKIKIETLEGNVGYL-----RFGNIGYIRIPEFSEHTSNLVEKAWKKLEKTNVEGLILDLRNNPGGLLSAAI 77 (192)
T ss_pred cEEEEEEEeEEEeeEEeEEEeec-----CCCcEEEEEEeEEChhhHHHHHHHHHHHHhCCCcEEEEEecCCCCCCHHHHH
Confidence 45667777777777776655431 2368999999999988889999999999988999999999999999999999
Q ss_pred HHHHhhhCCCcEEEEEcCC-CceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 383 EIAKIWLDKGVIVYICDSR-GVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 383 ~l~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
.++++|++++..++...++ +....+.... ...+++|++||||+.|+||||+||.+||+++++++||++|+|+|
T Consensus 78 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~pv~vL~~~~TaSaaE~~a~~lk~~~~a~viG~~T~G~~ 151 (192)
T smart00245 78 DVSSLFLDKGVIVYTIYRRTGELETYPANL--GRKYSKPLVVLVNEGTASASEIFAGALKDLGRALIVGERTFGKG 151 (192)
T ss_pred HHHHHhcCCCcEEEEEecCCCceEEEecCC--CcccCCCEEEEECCCCeeHHHHHHHHHhhCCCEEEEecCCcCCc
Confidence 9999999998777665554 4433333322 23568999999999999999999999999999999999999986
No 9
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=99.92 E-value=1.8e-24 Score=205.63 Aligned_cols=121 Identities=50% Similarity=0.816 Sum_probs=108.1
Q ss_pred EEEEEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCC
Q 012727 335 IGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDA 414 (457)
Q Consensus 335 igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (457)
||||+|++|.....+++.++|++++++++++||||||+|+||++..+..++++|++++..++.+.+.+..+.+... ..
T Consensus 50 igYi~i~sf~~~~~~~~~~~l~~~~~~~~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~--~~ 127 (211)
T cd07560 50 IGYIRITSFSENTAEELKKALKELKKQGMKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASD--DG 127 (211)
T ss_pred eEEEEEcccCchhHHHHHHHHHHHHhccCceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecC--CC
Confidence 6899999999888899999999998888999999999999999999999999999988887777766655544332 23
Q ss_pred CCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 415 LAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 415 ~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
..+.+|++||||+.|+||||+|+.+||.++++++||++|+|++
T Consensus 128 ~~~~~pvvVLvn~~TaSaaE~~a~~lk~~~~~~vIG~~T~G~~ 170 (211)
T cd07560 128 GLYDGPLVVLVNGGSASASEIVAGALQDNGRAVLVGERTFGKG 170 (211)
T ss_pred ccCCCCEEEEeCCCcccHHHHHHHHHhhcCCEEEEecCCCCCC
Confidence 4689999999999999999999999999999999999999985
No 10
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=99.92 E-value=2e-24 Score=211.01 Aligned_cols=126 Identities=28% Similarity=0.422 Sum_probs=104.0
Q ss_pred CCcEEEEEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCC---CcEE-EEEcCCCc----
Q 012727 332 SPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDK---GVIV-YICDSRGV---- 403 (457)
Q Consensus 332 ~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~---~~~~-~~~~~~~~---- 403 (457)
+++||||+|++|..++.+++.+++++++++++++||||||+|+||.+..+..++++|+++ +.++ +...+.+.
T Consensus 63 ~~~IGYi~i~~F~~~~~~~l~~a~~~l~~~~~~~LIlDLR~N~GG~~~~a~~las~f~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T cd07561 63 GKKVGYLVYNSFTSGYDDELNQAFAEFKAQGVTELVLDLRYNGGGLVSSANLLASLLAPAVALGQVFATLEYNDKRSANN 142 (256)
T ss_pred CCcEEEEEECccccchHHHHHHHHHHHHHcCCCeEEEEeCCCCCccHHHHHHHHHHhcCcccCCCeEEEEEecCCccCCC
Confidence 369999999999998899999999999999999999999999999999999999999994 4444 33333321
Q ss_pred -eeeEeCCC--CCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 404 -RDIYDTDG--TDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 404 -~~~~~~~~--~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
...+.... .......+||+||||+.||||||+|+.+||+++++++||++|+|||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~pv~VL~~~~TASAaE~~a~~Lk~~~~a~vIGe~T~Gk~ 199 (256)
T cd07561 143 EDLLFSSKTLAGGNSLNLSKVYVLTSGSTASASELVINSLKPYMDVVLIGETTYGKN 199 (256)
T ss_pred ceeecccccccccCcCCcccEEEEECCCcccHHHHHHHHhhccCCEEEEeCCCCCCC
Confidence 12222211 1223456899999999999999999999999999999999999996
No 11
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=99.88 E-value=1.4e-22 Score=184.94 Aligned_cols=122 Identities=39% Similarity=0.592 Sum_probs=92.6
Q ss_pred cEEEEEEeccCc--chHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCce-----ee
Q 012727 334 RIGYIKLTSFNQ--NASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVR-----DI 406 (457)
Q Consensus 334 ~igYi~i~sF~~--~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~-----~~ 406 (457)
+||||+|++|.. ...+.+.+.+++++++++++||||||+|+||+...+..++++|.+++...+.....+.. ..
T Consensus 1 ~i~yl~i~sf~~~~~~~~~~~~~~~~~~~~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF03572_consen 1 NIGYLRIPSFSENKSFDEELDEFLDKLKSKDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTI 80 (169)
T ss_dssp EEEEEEES-BCCGHHHHHHHHHHHHHHHHTTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEE
T ss_pred CEEEEEeCcccCccccHHHHHHHHHHHHHCCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCC
Confidence 589999999965 57889999999998889999999999999999999999999999987765543221111 11
Q ss_pred EeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 407 YDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 407 ~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
.... ....+++|++||||+.|+||||+|+.++|+++++++||++|+|++
T Consensus 81 ~~~~--~~~~~~~~v~vL~~~~t~Saae~fa~~lk~~~~~~ivGe~T~G~~ 129 (169)
T PF03572_consen 81 KWST--PKNRFNGPVYVLTDENTASAAEIFASALKDNKRATIVGEPTAGAG 129 (169)
T ss_dssp EECS--STT-SSSEEEEEE-TTBBTHHHHHHHHHHHTTSEEEEES--SB-E
T ss_pred CCcc--ccccCCCCEEEEeCCCCCChhHHHHHHHHhcCCCeEEeecCCCCC
Confidence 0000 135789999999999999999999999999999999999999974
No 12
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=99.67 E-value=3.4e-16 Score=161.19 Aligned_cols=170 Identities=15% Similarity=0.127 Sum_probs=133.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccCCccccchhhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhhccCCCCCHHHHHH
Q 012727 111 CVSVLFVQLVFTAMLVTSTTIALSETPSLALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYM 190 (457)
Q Consensus 111 ~iSyy~kG~l~~~lL~l~i~~~~~~~~~~~~~~~~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~~~~~~~~ef~~ 190 (457)
.+|||.||++++++||+.|+.. +.++++||+||+.||+.+-. ..+++..+.++..+..+++.+. .+|++
T Consensus 353 ~~sYY~kG~lv~L~lDl~iR~r---------~~~~~SLDdvmram~~~~~~-~~~~~t~e~v~av~~~~tg~dl-~~f~~ 421 (558)
T COG3975 353 LVSYYQKGALVALLLDLLIRER---------GGGQKSLDDVMRALWKEFGR-AERGYTPEDVQAVLENVTGLDL-ATFFD 421 (558)
T ss_pred chhhhhchhHHHHHHHHHHHhc---------CCCcccHHHHHHHHHHHhCc-CccCCCHHHHHHHHHhhccccH-HHHHH
Confidence 6899999999999999999977 77889999999999999966 4489999999999999888664 44554
Q ss_pred HHHHHHHhcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECC
Q 012727 191 AIRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDD 270 (457)
Q Consensus 191 ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG 270 (457)
...+-.+.+ +...++.+.++.... ...+...+|+.+... ++..+|+.|.++|||++|||.+||+|++|||
T Consensus 422 ~~i~~~~~~--~l~~~l~~~gL~~~~--~~~~~~~LGl~v~~~------~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G 491 (558)
T COG3975 422 EYIEGTEPP--PLNPLLERFGLTFTP--KPREAYYLGLKVKSE------GGHEKITFVFPGGPAYKAGLSPGDKIVAING 491 (558)
T ss_pred HHhhcCCCC--ChhhhhhhcceEEEe--cCCCCcccceEeccc------CCeeEEEecCCCChhHhccCCCccEEEEEcC
Confidence 444436666 566666554443322 222345689888765 6788999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEe
Q 012727 271 TSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 271 ~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
.+-. +.+.+.++.+++++.|.+..+++.++.
T Consensus 492 ~s~~---------l~~~~~~d~i~v~~~~~~~L~e~~v~~ 522 (558)
T COG3975 492 ISDQ---------LDRYKVNDKIQVHVFREGRLREFLVKL 522 (558)
T ss_pred cccc---------ccccccccceEEEEccCCceEEeeccc
Confidence 9211 123468899999999999998887764
No 13
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=99.33 E-value=1.1e-11 Score=100.15 Aligned_cols=79 Identities=37% Similarity=0.618 Sum_probs=65.3
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHh-cCCCCCcEEEEEEeCCeE
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERL-QGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l-~~~~G~~v~L~v~r~g~~ 303 (457)
++|+.+..... .++++|.+|.++|||+++||++||+|++|||+++.++ .++...+ ...+|++++|++.|+++.
T Consensus 2 ~lGv~~~~~~~----~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~ 75 (82)
T PF13180_consen 2 GLGVTVQNLSD----TGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGEE 75 (82)
T ss_dssp E-SEEEEECSC----SSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTEE
T ss_pred EECeEEEEccC----CCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEE
Confidence 57777766521 2489999999999999999999999999999999774 6666665 678999999999999999
Q ss_pred EEEEEE
Q 012727 304 RHLALT 309 (457)
Q Consensus 304 ~~vtl~ 309 (457)
++++++
T Consensus 76 ~~~~v~ 81 (82)
T PF13180_consen 76 LTVEVT 81 (82)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 988875
No 14
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=99.21 E-value=2e-10 Score=92.84 Aligned_cols=82 Identities=41% Similarity=0.785 Sum_probs=70.1
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC-C
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG-A 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~-g 301 (457)
+.++|+.+... +++++|..|.++|||+++||++||+|++|||+++.+++..++...+....|+.+.+++.|+ +
T Consensus 1 ~~~lG~~~~~~------~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~~~ 74 (85)
T cd00988 1 FGGIGLELKYD------DGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRGDG 74 (85)
T ss_pred CeEEEEEEEEc------CCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcCCC
Confidence 35788888654 4679999999999999999999999999999999998667777777766788999999998 8
Q ss_pred eEEEEEEEe
Q 012727 302 EIRHLALTR 310 (457)
Q Consensus 302 ~~~~vtl~r 310 (457)
+.+++++++
T Consensus 75 ~~~~~~~~~ 83 (85)
T cd00988 75 EPREVTLTR 83 (85)
T ss_pred CEEEEEEEE
Confidence 888887764
No 15
>PF14684 Tricorn_C1: Tricorn protease C1 domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=99.01 E-value=1.7e-10 Score=90.58 Aligned_cols=67 Identities=27% Similarity=0.464 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCCCccccC
Q 012727 142 SEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRN-EPMNTREETYMAIRKMLATLDDPFTRFLE 208 (457)
Q Consensus 142 ~~~~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~-~~~~~~~ef~~ai~~~l~~L~DpHt~~l~ 208 (457)
.+.+++|+++|+.++++|++++++|+||+++++.|.+. ....+.++|+..+.+|+++|+|+|+.+.+
T Consensus 2 ~E~~~~F~~~W~~~~~~f~d~~~~gvDW~~~~~~Y~p~v~~~~~~~el~~vl~eMl~eL~~~H~~~~~ 69 (70)
T PF14684_consen 2 AEWRQMFDEAWRLVRENFYDPDMHGVDWDAVYDRYRPLVPAAKTRDELYDVLNEMLGELNDSHTYVYG 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHGGGGG--SHHHHHHHHHHHHHTT--S---EE-
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCCccCccC
Confidence 47788999999999999999999999999999999875 45778899999999999999999998753
No 16
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.96 E-value=4.8e-09 Score=84.08 Aligned_cols=68 Identities=29% Similarity=0.414 Sum_probs=59.0
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEE
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 309 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~ 309 (457)
.++++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|+.+.+++.|+++.++++++
T Consensus 9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~~~~~~~~ 77 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTTKLTNVST 77 (79)
T ss_pred CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCEEEEEEEE
Confidence 4578999999999999999999999999999999975 666666654 3588999999999998888776
No 17
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.93 E-value=5.9e-09 Score=82.85 Aligned_cols=76 Identities=37% Similarity=0.552 Sum_probs=61.1
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRH 305 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~ 305 (457)
+|+..+.. ...++|..|.++|||+++||++||+|++|||+++.++ .++...+....++.+.+++.|+++..+
T Consensus 3 ~~~~~g~~------~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~~~~~ 74 (79)
T cd00989 3 LGFVPGGP------PIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNGETIT 74 (79)
T ss_pred eeEeccCC------ccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECCEEEE
Confidence 56666544 3458899999999999999999999999999999975 566666655557889999999988776
Q ss_pred EEEE
Q 012727 306 LALT 309 (457)
Q Consensus 306 vtl~ 309 (457)
+.++
T Consensus 75 ~~l~ 78 (79)
T cd00989 75 LTLT 78 (79)
T ss_pred EEec
Confidence 6653
No 18
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.93 E-value=4.4e-09 Score=81.69 Aligned_cols=68 Identities=47% Similarity=0.715 Sum_probs=57.9
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
++|+.+.... +.+++|..|.++|||+.+||++||+|++|||.++.+++.+++.+.++...|+.++|++
T Consensus 2 ~~G~~~~~~~-----~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 2 GLGFSIRGGT-----EGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CccEEEecCC-----CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 4677775441 2389999999999999999999999999999999999888888888877788888876
No 19
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.91 E-value=8.5e-09 Score=82.30 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=59.8
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEE
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRH 305 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~ 305 (457)
+|+.+... +++++|..|.++|||+++||++||+|++|||.++.++ .+++..+ ..++.+.+++.|+++..+
T Consensus 3 ~G~~~~~~------~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~~--~~~l~~~--~~~~~v~l~v~r~g~~~~ 72 (80)
T cd00990 3 LGLTLDKE------EGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDAL--QDRLKEY--QAGDPVELTVFRDDRLIE 72 (80)
T ss_pred ccEEEEcc------CCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHHH--HHHHHhc--CCCCEEEEEEEECCEEEE
Confidence 56666433 4579999999999999999999999999999999773 3443333 467899999999998887
Q ss_pred EEEEe
Q 012727 306 LALTR 310 (457)
Q Consensus 306 vtl~r 310 (457)
++++.
T Consensus 73 ~~v~~ 77 (80)
T cd00990 73 VPLTL 77 (80)
T ss_pred EEEEe
Confidence 77764
No 20
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.81 E-value=3.7e-08 Score=78.68 Aligned_cols=69 Identities=26% Similarity=0.354 Sum_probs=58.1
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
.+++|..|.++|||+. ||++||+|++|||.++.++ +++...+.. ..|+.+.+++.|+|+..+++++..+
T Consensus 8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~~~~~v~l~v~r~g~~~~~~v~l~~ 77 (79)
T cd00986 8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKEA--EELIDYIQSKKEGDTVKLKVKREEKELPEDLILKT 77 (79)
T ss_pred cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEec
Confidence 4789999999999986 8999999999999999875 566666653 5788999999999998888777644
No 21
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=98.71 E-value=3.2e-08 Score=79.36 Aligned_cols=72 Identities=35% Similarity=0.564 Sum_probs=57.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.++|+.+....... ..+++|.+|.++|||+++||++||+|++|||+++.+++..++...++...+ .++|+|.
T Consensus 10 ~~lG~~l~~~~~~~--~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~-~v~L~V~ 81 (81)
T PF00595_consen 10 GPLGFTLRGGSDND--EKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASN-PVTLTVQ 81 (81)
T ss_dssp SBSSEEEEEESTSS--SEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTS-EEEEEEE
T ss_pred CCcCEEEEecCCCC--cCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCC-cEEEEEC
Confidence 45788876552100 148899999999999999999999999999999999998888888875544 7777763
No 22
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.63 E-value=1.4e-07 Score=76.73 Aligned_cols=66 Identities=36% Similarity=0.550 Sum_probs=53.9
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCCeEEEEE
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLA 307 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g~~~~vt 307 (457)
.++++|..|.++|||+++||++||+|++|||+++.++ .++...+... .+..+.+++.|+|+..+++
T Consensus 23 ~~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g~~~~~~ 89 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGGKELTVT 89 (90)
T ss_pred CCEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEee
Confidence 3578999999999999999999999999999999875 4555555433 4788999999998765543
No 23
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.53 E-value=5.2e-07 Score=72.13 Aligned_cols=74 Identities=39% Similarity=0.613 Sum_probs=56.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
..+|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...+....+.. .+..+.+++.|++
T Consensus 12 ~~~G~~~~~~~---~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~-~~~~~~l~i~r~~ 85 (85)
T smart00228 12 GGLGFSLVGGK---DEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKK-AGGKVTLTVLRGG 85 (85)
T ss_pred CcccEEEECCC---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCC
Confidence 45777765331 00157999999999999999999999999999999998866666555554 3568888887753
No 24
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.50 E-value=5.6e-07 Score=71.77 Aligned_cols=70 Identities=37% Similarity=0.568 Sum_probs=53.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
.++|+.+.... ....+++|..+.++|||+++||++||+|++|||.++.+++..++...++...+ .+++++
T Consensus 12 ~~~G~~~~~~~---~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~-~v~l~v 81 (82)
T cd00992 12 GGLGFSLRGGK---DSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGD-EVTLTV 81 (82)
T ss_pred CCcCEEEeCcc---cCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCC-eEEEEE
Confidence 34677765331 01247999999999999999999999999999999998777888888775333 555554
No 25
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=98.46 E-value=1.1e-06 Score=71.82 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=53.7
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCC--------CcccccC--CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEE
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPG--------GPANRAG--ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVEL 295 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~g--------SpA~~AG--L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L 295 (457)
||..+... ++++.|..++++ ||-.+.| +++||.|++|||+++..- .++..+|.++.|+.|.|
T Consensus 3 LGAd~~~~------~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~L 74 (88)
T PF14685_consen 3 LGADFSYD------NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLL 74 (88)
T ss_dssp -SEEEEEE------TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEE
T ss_pred cceEEEEc------CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEE
Confidence 67888776 578999999987 7777777 569999999999999874 45677888999999999
Q ss_pred EEEeCC-eEEEEEE
Q 012727 296 TVRSGA-EIRHLAL 308 (457)
Q Consensus 296 ~v~r~g-~~~~vtl 308 (457)
+|.+.+ +.++++|
T Consensus 75 tv~~~~~~~R~v~V 88 (88)
T PF14685_consen 75 TVNRKPGGARTVVV 88 (88)
T ss_dssp EEE-STT-EEEEEE
T ss_pred EEecCCCCceEEEC
Confidence 998755 5666553
No 26
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.36 E-value=1.2e-06 Score=91.90 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=60.8
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEee
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 311 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~ 311 (457)
.+++|.+|.++|||+++||++||+|++|||+++.++ +++.+.+...+++.+.+++.|+|+..+++++..
T Consensus 203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~ 271 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGETLSISLTPE 271 (420)
T ss_pred cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCEEEEEEEEEc
Confidence 367899999999999999999999999999999886 677777766678889999999999888888763
No 27
>PRK10139 serine endoprotease; Provisional
Probab=98.35 E-value=1.4e-06 Score=92.17 Aligned_cols=69 Identities=20% Similarity=0.375 Sum_probs=60.3
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEe
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|+++.+++.|+|+.++++++.
T Consensus 289 ~~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~~~l~v~~ 358 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTL 358 (455)
T ss_pred CCceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence 3589999999999999999999999999999999986 666665654 67889999999999988888875
No 28
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.33 E-value=1.6e-06 Score=88.96 Aligned_cols=69 Identities=35% Similarity=0.480 Sum_probs=59.4
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEee
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTRE 311 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~ 311 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.+.. .+|+++.+++.|+|+.++++++..
T Consensus 278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 347 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGKQLELPVTID 347 (351)
T ss_pred ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEec
Confidence 578999999999999999999999999999999885 555555543 678899999999999888887754
No 29
>PRK10898 serine endoprotease; Provisional
Probab=98.33 E-value=1.9e-06 Score=88.48 Aligned_cols=70 Identities=26% Similarity=0.452 Sum_probs=59.2
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|+++.+++.|+++..+++++..+
T Consensus 279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 349 (353)
T PRK10898 279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQE 349 (353)
T ss_pred CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecc
Confidence 589999999999999999999999999999999875 444444433 6889999999999998888777543
No 30
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.30 E-value=2.2e-06 Score=84.10 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=56.9
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 309 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~ 309 (457)
.|+.|..+.++|||+++||++||+|++|||+++.++ +++.+.+.. .+++.++|++.|+|+..++.+.
T Consensus 191 ~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~~~~i~v~ 258 (259)
T TIGR01713 191 EGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQREDIYVR 258 (259)
T ss_pred eEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCEEEEEEEE
Confidence 589999999999999999999999999999999985 555555543 4678999999999998877663
No 31
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.29 E-value=2.2e-06 Score=90.81 Aligned_cols=68 Identities=22% Similarity=0.359 Sum_probs=59.7
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEee
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 311 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~ 311 (457)
+.+|..|.++|||++|||++||+|++|||+++.++ +++.+.+...+|+.+.+++.|+|+..+++++..
T Consensus 222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~~~~~v~~~ 289 (449)
T PRK10779 222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSPLSLTLTPD 289 (449)
T ss_pred CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEEEEEEEEee
Confidence 57899999999999999999999999999999886 666666666678899999999999888888764
No 32
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.26 E-value=3.1e-06 Score=89.05 Aligned_cols=69 Identities=28% Similarity=0.475 Sum_probs=58.7
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEEeCCeEEEEEEEee
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLALTRE 311 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~-~~~G~~v~L~v~r~g~~~~vtl~r~ 311 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+. ..+|+.+++++.|+++.++++++..
T Consensus 257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~ 326 (428)
T TIGR02037 257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKEKTITVTLG 326 (428)
T ss_pred CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEC
Confidence 579999999999999999999999999999999875 45544443 3578999999999999888887654
No 33
>PRK10942 serine endoprotease; Provisional
Probab=98.18 E-value=6.1e-06 Score=87.88 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=59.6
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~-~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+. ..+|+.+.+++.|+|+.++++++...
T Consensus 310 ~~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~~~v~v~l~~ 381 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKPVNVNVELQQ 381 (473)
T ss_pred CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeEEEEEEEeCc
Confidence 3589999999999999999999999999999999986 55555443 35788999999999998888776533
No 34
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.17 E-value=2.7e-06 Score=90.15 Aligned_cols=66 Identities=21% Similarity=0.102 Sum_probs=54.3
Q ss_pred eEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHh-cCCCCCcEEEEEEeCCeEEEEEEEe
Q 012727 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERL-QGPEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 243 vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l-~~~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
.+|..|.++|||++||+++||+|++|||+++.++ +++...+ ...+|+++++++.|+|+.++.+++.
T Consensus 128 ~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~~~~~v~l 194 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSDQRRDKTL 194 (449)
T ss_pred ccccccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCccceEEEEe
Confidence 4789999999999999999999999999999987 4443333 3356789999999999877666554
No 35
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=98.03 E-value=2.5e-05 Score=80.62 Aligned_cols=68 Identities=28% Similarity=0.439 Sum_probs=55.3
Q ss_pred CceEEEEec--------CCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEe
Q 012727 241 AGLVVISSM--------PGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 241 ~~vvV~~V~--------~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
+++.|.... .+|||++|||++||+|++|||+++..+ +++.+.+....++.+.+++.|+++..++++++
T Consensus 105 ~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V~P 180 (402)
T TIGR02860 105 KGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKIIETVIKP 180 (402)
T ss_pred CEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEEEEEEEEE
Confidence 366665432 258999999999999999999999986 67777776656889999999999988888764
No 36
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.01 E-value=1.5e-05 Score=83.96 Aligned_cols=65 Identities=31% Similarity=0.531 Sum_probs=55.7
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLA 307 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vt 307 (457)
.+++|.+|.++|||+++||++||+|++|||+++.++ +++.+.+.. +.|+.+++++.|+++...+.
T Consensus 362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g~~~~~~ 427 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGGATIFVT 427 (428)
T ss_pred CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEE
Confidence 579999999999999999999999999999999875 666666654 46889999999999866543
No 37
>PRK10139 serine endoprotease; Provisional
Probab=98.00 E-value=1.8e-05 Score=83.82 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=55.2
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl 308 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.+.... +.+.+++.|+|+...+.+
T Consensus 390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~ 454 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNESIYLLL 454 (455)
T ss_pred CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECCEEEEEEe
Confidence 478999999999999999999999999999999986 66766666543 688999999998766554
No 38
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.92 E-value=3.5e-05 Score=68.46 Aligned_cols=86 Identities=24% Similarity=0.394 Sum_probs=57.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe--C
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS--G 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~-GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r--~ 300 (457)
.-+|+.+++..........+.|..|.++|||++|||++ .|.|+.+|+..+.+. +++.+.+....+..+.|.|.. .
T Consensus 26 g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyns~~ 103 (138)
T PF04495_consen 26 GLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYNSKT 103 (138)
T ss_dssp SSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEETTT
T ss_pred CCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEECCC
Confidence 34677776654333345578899999999999999998 699999999888764 566677777788899999975 3
Q ss_pred CeEEEEEEEee
Q 012727 301 AEIRHLALTRE 311 (457)
Q Consensus 301 g~~~~vtl~r~ 311 (457)
+..+.+++++.
T Consensus 104 ~~vR~V~i~P~ 114 (138)
T PF04495_consen 104 DSVREVTITPS 114 (138)
T ss_dssp TCEEEEEE---
T ss_pred CeEEEEEEEcC
Confidence 55677777654
No 39
>PRK10942 serine endoprotease; Provisional
Probab=97.88 E-value=3.8e-05 Score=81.86 Aligned_cols=65 Identities=26% Similarity=0.457 Sum_probs=55.1
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl 308 (457)
.+++|.+|.++|||+++||++||+|++|||++|.++ +++.+.+.. .+..+.|+|.|+|....+.+
T Consensus 408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~-~~~~v~l~V~R~g~~~~v~~ 472 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDS-KPSVLALNIQRGDSSIYLLM 472 (473)
T ss_pred CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHh-CCCeEEEEEEECCEEEEEEe
Confidence 468999999999999999999999999999999986 677666655 34789999999998766544
No 40
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.87 E-value=2.5e-05 Score=81.20 Aligned_cols=62 Identities=19% Similarity=0.393 Sum_probs=50.9
Q ss_pred EEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE-eCCeEEEEEEEee
Q 012727 245 VISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR-SGAEIRHLALTRE 311 (457)
Q Consensus 245 V~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~-r~g~~~~vtl~r~ 311 (457)
|..|.++|||+++||++||+|++|||+++.+| .++...+. ++.+.+++. |+|+..++++.+.
T Consensus 2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw--~D~~~~l~---~e~l~L~V~~rdGe~~~l~Ie~~ 64 (433)
T TIGR03279 2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDL--IDYQFLCA---DEELELEVLDANGESHQIEIEKD 64 (433)
T ss_pred cCCcCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHhc---CCcEEEEEEcCCCeEEEEEEecC
Confidence 56789999999999999999999999999987 45544442 467889886 7888888888764
No 41
>KOG3129 consensus 26S proteasome regulatory complex, subunit PSMD9 [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=0.00014 Score=67.77 Aligned_cols=71 Identities=32% Similarity=0.387 Sum_probs=57.0
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCC-HHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG-IYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~-~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
-++|.+|.++|||+.|||+.||+|+++....-.+.. ++.+....+...++.+.+++.|.|+...+.+++..
T Consensus 140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~ 211 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKK 211 (231)
T ss_pred eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCccc
Confidence 467899999999999999999999999877665542 44444445556788999999999998888887644
No 42
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.62 E-value=6.5e-05 Score=78.96 Aligned_cols=65 Identities=18% Similarity=0.212 Sum_probs=52.2
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl 308 (457)
.+.+|..|.++|||++||+++||+|++|||+++.++ +++.+.+.... .++.+++.|+++..++++
T Consensus 128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~--~dl~~~ia~~~-~~v~~~I~r~g~~~~l~v 192 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGF--KDVRQQIADIA-GEPMVEILAERENWTFEV 192 (420)
T ss_pred CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhhc-ccceEEEEEecCceEecc
Confidence 366899999999999999999999999999999886 56655555445 678888888776655443
No 43
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.00035 Score=71.48 Aligned_cols=71 Identities=35% Similarity=0.586 Sum_probs=59.0
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHh-cCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERL-QGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l-~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|..|.++|||+++|+++||+|+++||+++... .++...+ ...+|+.+.+++.|+|+.++++++...
T Consensus 269 ~~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~~~~~~v~l~~ 340 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGKERELAVTLGD 340 (347)
T ss_pred CCceEEEecCCCChHHHcCCCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCEEEEEEEEecC
Confidence 3468999999999999999999999999999999885 4444433 334799999999999999888887543
No 44
>KOG3553 consensus Tax interaction protein TIP1 [Cell wall/membrane/envelope biogenesis]
Probab=97.53 E-value=6.8e-05 Score=61.71 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=42.0
Q ss_pred CCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc
Q 012727 239 SSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 286 (457)
Q Consensus 239 ~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~ 286 (457)
.+.+++|+.|.+||||+.|||+.+|.|+.|||.+..-.+.+++++.++
T Consensus 57 tD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~ 104 (124)
T KOG3553|consen 57 TDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRIT 104 (124)
T ss_pred CCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhh
Confidence 356899999999999999999999999999999988777777766664
No 45
>KOG3550 consensus Receptor targeting protein Lin-7 [Extracellular structures]
Probab=97.53 E-value=0.00029 Score=62.30 Aligned_cols=71 Identities=30% Similarity=0.488 Sum_probs=55.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.|+||.+... +..+..++|..++||+-|++- ||+.||.+++|||.++.+...+.++.++....| +|+|.++
T Consensus 101 eglgfnvmgg---keqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~g-svklvvr 172 (207)
T KOG3550|consen 101 EGLGFNVMGG---KEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVG-SVKLVVR 172 (207)
T ss_pred cccceeeccC---cccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcC-cEEEEEe
Confidence 4788887332 334567899999999999986 599999999999999998777778888875444 5666654
No 46
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=97.50 E-value=0.00017 Score=77.34 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=59.4
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
..|+||.+-..... ..--|-.+++||||++.| |++||.|++|||++|.++...+++++++ ..|-+|+|+|...+
T Consensus 764 NeGFGFVi~sS~~k----p~sgiGrIieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIK-daGlsVtLtIip~e 838 (984)
T KOG3209|consen 764 NEGFGFVIMSSQNK----PESGIGRIIEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIK-DAGLSVTLTIIPPE 838 (984)
T ss_pred CCceeEEEEecccC----CCCCccccccCChhHhhccccccceEEEecCeeeeccCchhHHHHHH-hcCceEEEEEcChh
Confidence 35788876443211 122388999999999988 9999999999999999998889988886 58899999997644
No 47
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=96.99 E-value=0.002 Score=69.44 Aligned_cols=78 Identities=28% Similarity=0.403 Sum_probs=62.6
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEe
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS 299 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r 299 (457)
.+.|+|+.+..... ...+.-+.|.+|..++||++.| +..||+|+.|||.-+-+.+..++++.++. +.|+.|.|.+.|
T Consensus 353 g~~GFGfTliGGdd-~~gDefLqVKsvl~DGPAa~dGkle~GDviV~INg~cvlGhTHAqaV~~fqaiPvg~~V~L~lcR 431 (984)
T KOG3209|consen 353 GYMGFGFTLIGGDD-VRGDEFLQVKSVLKDGPAAQDGKLETGDVIVHINGECVLGHTHAQAVKRFQAIPVGQSVDLVLCR 431 (984)
T ss_pred cccccceEEecCCc-CCCCceeeeeecccCCchhhcCccccCcEEEEECCceeccccHHHHHHHhhccccCCeeeEEEec
Confidence 35789998754321 1223457799999999999998 89999999999999999888888888764 568999999987
Q ss_pred C
Q 012727 300 G 300 (457)
Q Consensus 300 ~ 300 (457)
+
T Consensus 432 g 432 (984)
T KOG3209|consen 432 G 432 (984)
T ss_pred C
Confidence 4
No 48
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.80 E-value=0.0059 Score=60.64 Aligned_cols=68 Identities=21% Similarity=0.316 Sum_probs=55.2
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEe-CCeEEEEEEEeec
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS-GAEIRHLALTREK 312 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r-~g~~~~vtl~r~~ 312 (457)
++++..|.++||+... |++||.|++|||+++... +++...+.. ++|++|+++++| ++++..++++...
T Consensus 131 gvyv~~v~~~~~~~gk-l~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~~~~~~~~~tl~~ 200 (342)
T COG3480 131 GVYVLSVIDNSPFKGK-LEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHNETPEIVTITLIK 200 (342)
T ss_pred eEEEEEccCCcchhce-eccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEeccCCCceEEEEEEe
Confidence 8899999999999754 999999999999999874 666666654 689999999985 7777766666544
No 49
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.80 E-value=0.0075 Score=59.52 Aligned_cols=54 Identities=15% Similarity=0.289 Sum_probs=41.6
Q ss_pred ccccCCCCCCEEEEECCEecCCCC-HHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEE
Q 012727 254 ANRAGILSGDVILAIDDTSTESMG-IYDAAERLQGPEGSPVELTVRSGAEIRHLALT 309 (457)
Q Consensus 254 A~~AGL~~GD~IlaIdG~~v~~~~-~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~ 309 (457)
-.++||++||++++|||.++.+.. ..++++.|+ ..+.++|+|.|+|+..++.+.
T Consensus 220 F~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~--~~tei~ltVeRdGq~~~i~i~ 274 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTDPRAMIALMRQLP--SMDSIQLTVLRKGARHDISIA 274 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhc--cCCeEEEEEEECCEEEEEEEE
Confidence 356899999999999999998752 113444443 567999999999998887653
No 50
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=96.62 E-value=0.0028 Score=67.75 Aligned_cols=87 Identities=24% Similarity=0.391 Sum_probs=64.8
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCC-CcEEEEEEeCCe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEG-SPVELTVRSGAE 302 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G-~~v~L~v~r~g~ 302 (457)
.||+.+- +.++-..=.-++|.....++||++.| |..||.|++|||.+..++.+......+++... +.|+++|.+-.-
T Consensus 658 iLGVViV-ESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpP 736 (829)
T KOG3605|consen 658 ILGVVIV-ESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPP 736 (829)
T ss_pred eeeEEEE-ecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCC
Confidence 3676652 33332223346788899999999998 99999999999999999988877777776544 578888877666
Q ss_pred EEEEEEEeec
Q 012727 303 IRHLALTREK 312 (457)
Q Consensus 303 ~~~vtl~r~~ 312 (457)
..++.|.|..
T Consensus 737 V~~V~I~RPd 746 (829)
T KOG3605|consen 737 VTTVLIRRPD 746 (829)
T ss_pred ceEEEeeccc
Confidence 6677776644
No 51
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=96.50 E-value=0.0076 Score=65.00 Aligned_cols=69 Identities=29% Similarity=0.485 Sum_probs=57.1
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
+-++|..|.++|||++. |++||.+++||+.-+.++ ..+-+.+....|+.++|++.|+|+..+++++...
T Consensus 303 gmLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqelel~vtvqd 371 (955)
T KOG1421|consen 303 GMLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQELELTVTVQD 371 (955)
T ss_pred eeEEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEEEEEEEecc
Confidence 34678899999999987 999999999998777653 5555666667899999999999999888887543
No 52
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=96.48 E-value=0.0044 Score=61.84 Aligned_cols=73 Identities=25% Similarity=0.354 Sum_probs=60.5
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
..+|+|+.+.... +.+=.++|..++.+-.|+..| |-.||-|+.|||+.|...+.+++++.|+ ..|+.|+|+|.
T Consensus 64 ~vGGlGLSIKGGa---EHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLR-NAGdeVtlTV~ 137 (505)
T KOG3549|consen 64 KVGGLGLSIKGGA---EHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILR-NAGDEVTLTVK 137 (505)
T ss_pred ecCcceeeecccc---ccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHH-hcCCEEEEEeH
Confidence 4578999885442 223357788899999999988 7899999999999999999999999987 58999999984
No 53
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=96.22 E-value=0.011 Score=65.89 Aligned_cols=77 Identities=30% Similarity=0.435 Sum_probs=58.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.|+|+.+-.-.+.-...=|++|.+|.+|++|+..| |+.||.+++|||.+..+++-+++..+|. ..|..|.|.|...|
T Consensus 943 nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmt-rtg~vV~leVaKqg 1020 (1629)
T KOG1892|consen 943 NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMT-RTGNVVHLEVAKQG 1020 (1629)
T ss_pred CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHh-ccCCeEEEehhhhh
Confidence 56777664332211112368999999999999988 9999999999999999997677666654 67889999986543
No 54
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=96.20 E-value=0.0081 Score=63.76 Aligned_cols=57 Identities=26% Similarity=0.444 Sum_probs=48.0
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHH-HhcCCCCCcEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAE-RLQGPEGSPVELTV 297 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~-~l~~~~G~~v~L~v 297 (457)
-+++|..|.+||||++.||+.||.|+.||.++..++..++++. +|.-++|+.++|..
T Consensus 429 VGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtila 486 (1027)
T KOG3580|consen 429 VGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILA 486 (1027)
T ss_pred eeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehh
Confidence 3789999999999999999999999999999999886666554 44457888888764
No 55
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=96.05 E-value=0.0088 Score=66.35 Aligned_cols=67 Identities=27% Similarity=0.355 Sum_probs=53.7
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
+..|+||.-+ ..++|..|.+|+|+.- .|++||.|++|||+++.+...+.++.+++. -.+.|.|+|-+
T Consensus 65 ~~lGFgfvag---------rPviVr~VT~GGps~G-KL~PGDQIl~vN~Epv~daprervIdlvRa-ce~sv~ltV~q 131 (1298)
T KOG3552|consen 65 ASLGFGFVAG---------RPVIVRFVTEGGPSIG-KLQPGDQILAVNGEPVKDAPRERVIDLVRA-CESSVNLTVCQ 131 (1298)
T ss_pred ccccceeecC---------CceEEEEecCCCCccc-cccCCCeEEEecCcccccccHHHHHHHHHH-HhhhcceEEec
Confidence 3456776543 3688999999999974 499999999999999999888888888873 45678888865
No 56
>KOG3651 consensus Protein kinase C, alpha binding protein [Signal transduction mechanisms]
Probab=96.03 E-value=0.013 Score=57.65 Aligned_cols=68 Identities=25% Similarity=0.366 Sum_probs=50.6
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
+|+.++..-. .=.-++|+.|.+++||++.| ++.||+|++|||.+|.+.+--++.++++. .-..|++++
T Consensus 18 iGISIGGGap---yCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~-~~~eV~Ihy 86 (429)
T KOG3651|consen 18 IGISIGGGAP---YCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQV-SLNEVKIHY 86 (429)
T ss_pred eeEEecCCCC---cCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHH-hccceEEEe
Confidence 5777653210 11247899999999999998 99999999999999999765566666653 345677766
No 57
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=95.70 E-value=0.065 Score=49.74 Aligned_cols=69 Identities=29% Similarity=0.437 Sum_probs=56.2
Q ss_pred chHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEE
Q 012727 346 NASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLV 425 (457)
Q Consensus 346 ~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLv 425 (457)
...+.+.+.|++..+.+++.|||++ +.|||.+..+..+...+.. .+.|+++.+
T Consensus 13 ~~~~~l~~~l~~a~~~~~~~ivl~i-nspGG~v~~~~~I~~~l~~--------------------------~~~pvva~V 65 (178)
T cd07021 13 GLAAFVERALKEAKEEGADAVVLDI-DTPGGRVDSALEIVDLILN--------------------------SPIPTIAYV 65 (178)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEE-ECcCCCHHHHHHHHHHHHh--------------------------CCCCEEEEE
Confidence 4566788899888777899999999 8999999999999888742 236788888
Q ss_pred cCCCcchHHHHHHHHh
Q 012727 426 NKGTASASEILAGALK 441 (457)
Q Consensus 426 n~~TaSaaE~~a~~lk 441 (457)
++.++|++-+++.+-.
T Consensus 66 ~g~AaSaG~~ia~a~d 81 (178)
T cd07021 66 NDRAASAGALIALAAD 81 (178)
T ss_pred CCchHHHHHHHHHhCC
Confidence 8888888888887654
No 58
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=95.45 E-value=0.01 Score=63.76 Aligned_cols=58 Identities=31% Similarity=0.513 Sum_probs=48.9
Q ss_pred CCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 239 SSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 239 ~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.+.+++|..|.||+.|+++|++.||+|+.|||+....+....+...|++. ..++|++.
T Consensus 560 kGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn--thLtltvK 617 (1283)
T KOG3542|consen 560 KGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN--THLTLTVK 617 (1283)
T ss_pred ccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC--ceEEEEEe
Confidence 45689999999999999999999999999999999998877888888753 45555554
No 59
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=95.41 E-value=0.019 Score=58.27 Aligned_cols=71 Identities=24% Similarity=0.383 Sum_probs=56.7
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
..|+|+.++.... ..-.+.|..+++|=.|++++ |..||.|++|||.+..+.+.+++++.|+ ..|+.|.+.|
T Consensus 95 ~gGLGISIKGGre---NkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLK-raGkeV~lev 166 (506)
T KOG3551|consen 95 AGGLGISIKGGRE---NKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALK-RAGKEVLLEV 166 (506)
T ss_pred CCcceEEeecCcc---cCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHH-hhCceeeeee
Confidence 3689998864421 11246788899999999987 8999999999999999998899888886 5788887766
No 60
>KOG3532 consensus Predicted protein kinase [General function prediction only]
Probab=95.24 E-value=0.036 Score=59.84 Aligned_cols=65 Identities=25% Similarity=0.335 Sum_probs=48.2
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVEL 295 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L 295 (457)
..+|+.+... .+.-+.|-.|.+++||.++.+++||++++|||.||... +++.+.++...|+-..|
T Consensus 386 ~~ig~vf~~~-----~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~s~--~q~~~~~~s~~~~~~~l 450 (1051)
T KOG3532|consen 386 SPIGLVFDKN-----TNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIRSE--RQATRFLQSTTGDLTVL 450 (1051)
T ss_pred CceeEEEecC-----CceEEEEEEecCCChhhHhcCCCcceEEEecCccchhH--HHHHHHHHhcccceEEE
Confidence 3578777654 13346689999999999999999999999999999874 55555555445543333
No 61
>KOG1320 consensus Serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.063 Score=56.74 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=54.8
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCCeEEEEEEEee
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTRE 311 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g~~~~vtl~r~ 311 (457)
.++|..|.+|+|+...++.+||+|++|||+++.+. .++...++.. .++++.+..+|..+..++.+..+
T Consensus 399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e~~tl~Il~~ 467 (473)
T KOG1320|consen 399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAEDATLEILPE 467 (473)
T ss_pred EEEEEEeccCCCcccccccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCccceeEEeccc
Confidence 47788999999999999999999999999999985 6666666532 34677777788888777777654
No 62
>KOG3571 consensus Dishevelled 3 and related proteins [General function prediction only]
Probab=94.77 E-value=0.047 Score=57.20 Aligned_cols=74 Identities=32% Similarity=0.435 Sum_probs=55.4
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCC--CcEEEEEEe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEG--SPVELTVRS 299 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G--~~v~L~v~r 299 (457)
-||+.+-.. .....+++++|.++.++++.+..| |.+||.|+.||.....+++.+++++.|+.... ..++|+|-.
T Consensus 262 fLGiSivgq-sn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk 338 (626)
T KOG3571|consen 262 FLGISIVGQ-SNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAK 338 (626)
T ss_pred cceeEeecc-cCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEee
Confidence 367765332 112347899999999999888888 99999999999999999988888877764222 257777743
No 63
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=94.73 E-value=0.082 Score=56.45 Aligned_cols=77 Identities=22% Similarity=0.411 Sum_probs=54.7
Q ss_pred eeeeEEEeecCCC---CCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~---~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+...... ....-.++|..|.+|+||+-. |+.||.|+-|||.+..+....-+++.|+ +.|+...++|+|.
T Consensus 20 rGFGIAiSGGRDnPhf~~getSiViSDVlpGGPAeG~-LQenDrvvMVNGvsMenv~haFAvQqLr-ksgK~A~ItvkRp 97 (1027)
T KOG3580|consen 20 RGFGIAISGGRDNPHFENGETSIVISDVLPGGPAEGL-LQENDRVVMVNGVSMENVLHAFAVQQLR-KSGKVAAITVKRP 97 (1027)
T ss_pred CcceeEeecCCCCCCccCCceeEEEeeccCCCCcccc-cccCCeEEEEcCcchhhhHHHHHHHHHH-hhccceeEEeccc
Confidence 4677776432111 111225789999999999843 9999999999999988765444566665 5777888888876
Q ss_pred Ce
Q 012727 301 AE 302 (457)
Q Consensus 301 g~ 302 (457)
.+
T Consensus 98 rk 99 (1027)
T KOG3580|consen 98 RK 99 (1027)
T ss_pred ce
Confidence 54
No 64
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.69 E-value=0.065 Score=51.31 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=43.3
Q ss_pred ecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEE
Q 012727 248 SMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 248 V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl 308 (457)
..+++-.+..|+++||+.++||+.++++- +++.++++. ..-+.+++++.|+|+...+.+
T Consensus 214 gkd~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlTv~R~G~rhdInV 273 (275)
T COG3031 214 GKDGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLTVIRRGKRHDINV 273 (275)
T ss_pred CCCcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEEEEecCccceeee
Confidence 34456677789999999999999999873 444444332 234688999999998776654
No 65
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=94.30 E-value=0.092 Score=55.68 Aligned_cols=69 Identities=26% Similarity=0.414 Sum_probs=55.9
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.+|+.++... ++.++|..+..|+.+++.| |+.||+|..|||.++.+....++..+++...| ++++.+..
T Consensus 135 plG~Tik~~e-----~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G-~itfkiiP 204 (542)
T KOG0609|consen 135 PLGATIRVEE-----DTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRG-SITFKIIP 204 (542)
T ss_pred ccceEEEecc-----CCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCC-cEEEEEcc
Confidence 3677776642 2368999999999999999 79999999999999999888888888876664 67777643
No 66
>KOG3606 consensus Cell polarity protein PAR6 [Signal transduction mechanisms]
Probab=93.14 E-value=0.32 Score=47.43 Aligned_cols=61 Identities=16% Similarity=0.376 Sum_probs=49.2
Q ss_pred CceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.+++|....+|+-|+..| |.+.|+|++|||+.|.+.+++++..+|-.. ...+-+||+...+
T Consensus 194 pGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN-shNLIiTVkPANQ 255 (358)
T KOG3606|consen 194 PGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN-SHNLIITVKPANQ 255 (358)
T ss_pred CceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc-ccceEEEeccccc
Confidence 478999999999999999 688999999999999999999988777533 3355566665443
No 67
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=93.03 E-value=0.72 Score=42.97 Aligned_cols=69 Identities=28% Similarity=0.398 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEE
Q 012727 345 QNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVL 424 (457)
Q Consensus 345 ~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVL 424 (457)
.+....+.+.++.+.+.+++.|+|++ +.|||.+..+..+...+.. .++|++..
T Consensus 12 ~~~~~~l~~~l~~a~~~~~~~vvl~I-nSpGG~v~~~~~i~~~l~~--------------------------~~kPvia~ 64 (187)
T cd07020 12 PATADYLERAIDQAEEGGADALIIEL-DTPGGLLDSTREIVQAILA--------------------------SPVPVVVY 64 (187)
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------CCCCEEEE
Confidence 34567888898888777789999866 6778899998888776531 24567777
Q ss_pred Ec---CCCcchHHHHHHHH
Q 012727 425 VN---KGTASASEILAGAL 440 (457)
Q Consensus 425 vn---~~TaSaaE~~a~~l 440 (457)
++ +.++|++-.++.+-
T Consensus 65 v~~~~G~AasgG~~iala~ 83 (187)
T cd07020 65 VYPSGARAASAGTYILLAA 83 (187)
T ss_pred EecCCCCchhHHHHHHHhC
Confidence 76 67777766666553
No 68
>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]
Probab=92.82 E-value=0.16 Score=58.20 Aligned_cols=54 Identities=28% Similarity=0.348 Sum_probs=45.9
Q ss_pred eEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 243 vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
-.|.+|.++|||..+|+++||.|+.|||+++.++...++++++. +.|..+.+.+
T Consensus 660 h~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll-~~gn~v~~~t 713 (1205)
T KOG0606|consen 660 HSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLL-KSGNKVTLRT 713 (1205)
T ss_pred eeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHH-hcCCeeEEEe
Confidence 35788999999999999999999999999999998889988875 4566666554
No 69
>PF12812 PDZ_1: PDZ-like domain
Probab=91.99 E-value=0.31 Score=38.99 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=34.3
Q ss_pred eEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc
Q 012727 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ 286 (457)
Q Consensus 243 vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~ 286 (457)
.++++...|+++...|+..|.+|.+|||+++.++ +++.+.++
T Consensus 32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~L--d~f~~vvk 73 (78)
T PF12812_consen 32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDL--DDFIKVVK 73 (78)
T ss_pred EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCH--HHHHHHHH
Confidence 5666777889988777999999999999999885 66666554
No 70
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.57 E-value=0.56 Score=48.62 Aligned_cols=83 Identities=27% Similarity=0.373 Sum_probs=57.9
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccCCC-CCCEEEEE-CCEecCCCCHHHHHHHhcCCCCCcEEEEEEe--CC
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGIL-SGDVILAI-DDTSTESMGIYDAAERLQGPEGSPVELTVRS--GA 301 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~-~GD~IlaI-dG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r--~g 301 (457)
||+.+++-...-....-+-|.+|.++|||+.||+. -+|.|+-| |.+.-. .+++..++....++.+++-|.. .+
T Consensus 94 lGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~~---~eDl~~lIeshe~kpLklyVYN~D~d 170 (462)
T KOG3834|consen 94 LGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMHE---EEDLFTLIESHEGKPLKLYVYNHDTD 170 (462)
T ss_pred cceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhccc---hHHHHHHHHhccCCCcceeEeecCCC
Confidence 67776654321111223558999999999999987 78999988 655433 3677778887888999988854 34
Q ss_pred eEEEEEEEee
Q 012727 302 EIRHLALTRE 311 (457)
Q Consensus 302 ~~~~vtl~r~ 311 (457)
..+.++++..
T Consensus 171 ~~ReVti~pn 180 (462)
T KOG3834|consen 171 SCREVTITPN 180 (462)
T ss_pred ccceEEeecc
Confidence 5677777743
No 71
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=90.20 E-value=0.91 Score=46.67 Aligned_cols=57 Identities=28% Similarity=0.333 Sum_probs=43.4
Q ss_pred EEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCc---EEEEEEe-CCeE
Q 012727 245 VISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSP---VELTVRS-GAEI 303 (457)
Q Consensus 245 V~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~---v~L~v~r-~g~~ 303 (457)
+..+..+|+|..+|+++||.|+++|+.++..+ +++...+....+.. +.+.+.| ++..
T Consensus 133 ~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 193 (375)
T COG0750 133 VGEVAPKSAAALAGLRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIRLDGEA 193 (375)
T ss_pred eeecCCCCHHHHcCCCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEecccee
Confidence 44688899999999999999999999999987 44444444445555 6777777 5554
No 72
>KOG3605 consensus Beta amyloid precursor-binding protein [General function prediction only]
Probab=89.59 E-value=0.28 Score=53.14 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=41.7
Q ss_pred EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCC
Q 012727 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEG 290 (457)
Q Consensus 244 vV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G 290 (457)
+|-+...|+-|++-|+++|-.|+.|||++|.....+.++++|....|
T Consensus 759 iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVG 805 (829)
T KOG3605|consen 759 IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVG 805 (829)
T ss_pred EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhh
Confidence 67789999999999999999999999999988888888888865555
No 73
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=89.33 E-value=1.9 Score=38.73 Aligned_cols=67 Identities=25% Similarity=0.365 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEE
Q 012727 346 NASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVL 424 (457)
Q Consensus 346 ~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVL 424 (457)
...+++.+.++.+.+. ++++|||++. .+||....+..|...+.. +++|++..
T Consensus 11 ~~~~~l~~~l~~a~~d~~~~~ivl~~~-s~Gg~~~~~~~i~~~l~~--------------------------~~kpvva~ 63 (161)
T cd00394 11 VSADQLAAQIRFAEADNSVKAIVLEVN-TPGGRVDAGMNIVDALQA--------------------------SRKPVIAY 63 (161)
T ss_pred chHHHHHHHHHHHHhCCCCceEEEEEE-CCCcCHHHHHHHHHHHHH--------------------------hCCCEEEE
Confidence 4567788888887654 5899999995 578888777777766521 23566666
Q ss_pred EcCCCcchHHHHHHH
Q 012727 425 VNKGTASASEILAGA 439 (457)
Q Consensus 425 vn~~TaSaaE~~a~~ 439 (457)
+++.++|++=.++.+
T Consensus 64 ~~g~~~s~g~~la~~ 78 (161)
T cd00394 64 VGGQAASAGYYIATA 78 (161)
T ss_pred ECChhHHHHHHHHhC
Confidence 666666666555543
No 74
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=89.03 E-value=0.5 Score=51.14 Aligned_cols=60 Identities=23% Similarity=0.316 Sum_probs=49.1
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG 287 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~ 287 (457)
..|+|+.+... .+|-.+|+.+.++|||+..+ |..||+|+.||++-+.+|.+..+++.++.
T Consensus 212 ~eglg~~I~Ss-----ydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~ 272 (638)
T KOG1738|consen 212 SEGLGLYIDSS-----YDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRE 272 (638)
T ss_pred ccCCceEEeee-----cCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhccc
Confidence 35678777544 25667889999999999876 99999999999999999988887777764
No 75
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=88.17 E-value=2.3 Score=39.30 Aligned_cols=71 Identities=18% Similarity=0.212 Sum_probs=52.2
Q ss_pred cchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEE
Q 012727 345 QNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVL 424 (457)
Q Consensus 345 ~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVL 424 (457)
......+++.++...+.+++.|+|++ +-|||.+..+..|.+.+.. .+.|+++.
T Consensus 12 ~~~~~~l~~~l~~A~~~~~~~i~l~i-nSPGG~v~~~~~I~~~i~~--------------------------~~~pvv~~ 64 (172)
T cd07015 12 SYTYDQFDRYITIAEQDNAEAIIIEL-DTPGGRADAAGNIVQRIQQ--------------------------SKIPVIIY 64 (172)
T ss_pred HhHHHHHHHHHHHHhcCCCCeEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCcCEEEE
Confidence 34566788888877667899999999 5678899988888777631 24567777
Q ss_pred Ec---CCCcchHHHHHHHHhc
Q 012727 425 VN---KGTASASEILAGALKD 442 (457)
Q Consensus 425 vn---~~TaSaaE~~a~~lk~ 442 (457)
++ +..+|++-+++.+-..
T Consensus 65 v~p~g~~AaSag~~I~~a~~~ 85 (172)
T cd07015 65 VYPPGASAASAGTYIALGSHL 85 (172)
T ss_pred EecCCCeehhHHHHHHHhcCc
Confidence 77 7777777777766443
No 76
>KOG3834 consensus Golgi reassembly stacking protein GRASP65, contains PDZ domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=0.91 Score=47.11 Aligned_cols=68 Identities=24% Similarity=0.313 Sum_probs=48.2
Q ss_pred CceEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe--CCeEEEEEEEe
Q 012727 241 AGLVVISSMPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS--GAEIRHLALTR 310 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~-GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r--~g~~~~vtl~r 310 (457)
.+..|..|.++|||.+|||.+ -|-|++|||..+... .+.+...++. .-++|++++.. .-..+.+.|++
T Consensus 15 eg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~-~sekVkltv~n~kt~~~R~v~I~p 85 (462)
T KOG3834|consen 15 EGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKA-NSEKVKLTVYNSKTQEVRIVEIVP 85 (462)
T ss_pred eeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHh-cccceEEEEEecccceeEEEEecc
Confidence 367789999999999999866 689999999999864 2344444443 33459999864 23455555554
No 77
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=84.37 E-value=7.1 Score=36.90 Aligned_cols=68 Identities=21% Similarity=0.275 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEE
Q 012727 347 ASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLV 425 (457)
Q Consensus 347 ~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLv 425 (457)
..+++.+.++++.+ ..+++|||++- .+||.+..+.++...+..- ...+|++..+
T Consensus 14 s~~~l~~~l~~a~~d~~i~~vvl~~~-s~Gg~~~~~~~l~~~i~~~------------------------~~~kpvia~v 68 (207)
T TIGR00706 14 SPEDFDKKIKRIKDDKSIKALLLRIN-SPGGTVVASEEIYEKLKKL------------------------KAKKPVVASM 68 (207)
T ss_pred CHHHHHHHHHHHhhCCCccEEEEEec-CCCCCHHHHHHHHHHHHHh------------------------cCCCCEEEEE
Confidence 45678888888764 57999999984 5788887776666654210 0146777777
Q ss_pred cCCCcchHHHHHHH
Q 012727 426 NKGTASASEILAGA 439 (457)
Q Consensus 426 n~~TaSaaE~~a~~ 439 (457)
++.++|++=.++.+
T Consensus 69 ~g~a~s~g~~la~a 82 (207)
T TIGR00706 69 GGVAASGGYYIAMA 82 (207)
T ss_pred CCccchHHHHHHhc
Confidence 77777666555554
No 78
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=83.95 E-value=2.7 Score=37.82 Aligned_cols=66 Identities=20% Similarity=0.285 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEE
Q 012727 346 NASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLV 425 (457)
Q Consensus 346 ~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLv 425 (457)
...+.+.+.+..+... +.++|.+ +-|||++..+..|.+.+.. .++|+++.+
T Consensus 15 ~~~~~~~~~l~~~~~~--~~i~l~i-nspGG~~~~~~~i~~~i~~--------------------------~~~pvi~~v 65 (160)
T cd07016 15 VTAKEFKDALDALGDD--SDITVRI-NSPGGDVFAGLAIYNALKR--------------------------HKGKVTVKI 65 (160)
T ss_pred cCHHHHHHHHHhccCC--CCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEEEEE
Confidence 3567888888876543 8999999 7889999998888877632 235666667
Q ss_pred cCCCcchHHHHHHHH
Q 012727 426 NKGTASASEILAGAL 440 (457)
Q Consensus 426 n~~TaSaaE~~a~~l 440 (457)
++.++|++=.++.+-
T Consensus 66 ~g~a~s~g~~ia~a~ 80 (160)
T cd07016 66 DGLAASAASVIAMAG 80 (160)
T ss_pred cchHHhHHHHHHhcC
Confidence 776776666555543
No 79
>KOG3938 consensus RGS-GAIP interacting protein GIPC, contains PDZ domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.91 E-value=2.2 Score=41.68 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=50.3
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEE
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVR 298 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~ 298 (457)
+|+.+... .-+..+|..+.+||--++-- +++||-|-+|||+.+-++...++.+.|+. +.|++.++.+.
T Consensus 139 lGlTITDN-----G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLi 208 (334)
T KOG3938|consen 139 LGLTITDN-----GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLI 208 (334)
T ss_pred cceEEeeC-----CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEee
Confidence 67776532 13456788888888777643 89999999999999999988888777754 45666666654
No 80
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=80.50 E-value=12 Score=39.42 Aligned_cols=61 Identities=21% Similarity=0.366 Sum_probs=51.3
Q ss_pred CcEEEEEEecc-CcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcE
Q 012727 333 PRIGYIKLTSF-NQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVI 394 (457)
Q Consensus 333 ~~igYi~i~sF-~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~ 394 (457)
+++-++.+..= +..+.+.+++.++..++.+++.+||+| +-|||.++.+.++.+.+...+.+
T Consensus 26 ~~v~vi~i~g~I~~~s~~~l~r~l~~A~~~~a~~vvl~l-dTPGGl~~sm~~iv~~i~~s~vP 87 (436)
T COG1030 26 KKVYVIEIDGAIDPASADYLQRALQSAEEENAAAVVLEL-DTPGGLLDSMRQIVRAILNSPVP 87 (436)
T ss_pred CeEEEEEecCccCHHHHHHHHHHHHHHHhCCCcEEEEEe-cCCCchHHHHHHHHHHHHcCCCC
Confidence 57778888764 455788899999998888999999998 78999999999999999877654
No 81
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=77.59 E-value=9.6 Score=35.92 Aligned_cols=81 Identities=21% Similarity=0.166 Sum_probs=54.7
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
.++-||. ...+......+.+.|..+.. .+.+.|+|.+- -|||++..+..|.+.+..
T Consensus 23 ~r~I~i~-g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~IN-SpGG~v~ag~aI~d~i~~--------------------- 79 (197)
T PRK14512 23 SRSIVIA-GEINKDLSELFQEKILLLEALDSKKPIFVYID-SEGGDIDAGFAIFNMIRF--------------------- 79 (197)
T ss_pred CcEEEEC-CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEE-CCCCCHHHHHHHHHHHHh---------------------
Confidence 4665664 22334456778888877765 45788999986 788999999988888632
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHHh
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGALK 441 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk 441 (457)
.+.||++++++..+|++-+++.+=.
T Consensus 80 -----~~~~V~t~v~G~AaSaaslIl~ag~ 104 (197)
T PRK14512 80 -----VKPKVFTIGVGLVASAAALIFLAAK 104 (197)
T ss_pred -----CCCCEEEEEEeeeHhHHHHHHhcCC
Confidence 2345666666666666666655543
No 82
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=77.34 E-value=2.7 Score=39.14 Aligned_cols=38 Identities=26% Similarity=0.303 Sum_probs=32.3
Q ss_pred eeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEEC
Q 012727 226 VGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAID 269 (457)
Q Consensus 226 lGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaId 269 (457)
.|+.+..+ ++.+.|..|..||||+++|+.-|++|+++-
T Consensus 113 ~GL~l~~e------~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~ 150 (183)
T PF11874_consen 113 AGLTLMEE------GGKVIVDEVEFGSPAEKAGIDFDWEITEVE 150 (183)
T ss_pred CCCEEEee------CCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence 46666554 678999999999999999999999999873
No 83
>KOG2921 consensus Intramembrane metalloprotease (sterol-regulatory element-binding protein (SREBP) protease) [Posttranslational modification, protein turnover, chaperones]
Probab=77.21 E-value=3.6 Score=42.46 Aligned_cols=45 Identities=27% Similarity=0.343 Sum_probs=36.1
Q ss_pred CCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhc
Q 012727 240 SAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQ 286 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~ 286 (457)
+.++.|++|...||+.-. ||.+||+|+++||-+|... ++..++++
T Consensus 219 g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~ 264 (484)
T KOG2921|consen 219 GEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLA 264 (484)
T ss_pred CceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHH
Confidence 457899999999998653 8999999999999999873 45555543
No 84
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=76.93 E-value=10 Score=34.77 Aligned_cols=69 Identities=20% Similarity=0.193 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEE
Q 012727 347 ASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLV 425 (457)
Q Consensus 347 ~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLv 425 (457)
...++.++++++.+ .++++|||++. .+||++.....+...+.. + ...++||+..+
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~-~~gg~~~~~~~~~~~i~~----------------~-------~~~~kpVia~v 78 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIRAELAA----------------A-------RAAGKPVVASG 78 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEee-CCCcCHHHHHHHHHHHHH----------------H-------HhCCCCEEEEE
Confidence 46688888887765 46899999994 667776654443332210 0 02366788888
Q ss_pred cCCCcchHHHHHHH
Q 012727 426 NKGTASASEILAGA 439 (457)
Q Consensus 426 n~~TaSaaE~~a~~ 439 (457)
++.++|++=.++.+
T Consensus 79 ~G~a~g~g~~la~a 92 (177)
T cd07014 79 GGNAASGGYWISTP 92 (177)
T ss_pred CCchhHHHHHHHHh
Confidence 87777777666654
No 85
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=76.86 E-value=7.3 Score=35.40 Aligned_cols=44 Identities=14% Similarity=0.132 Sum_probs=34.7
Q ss_pred cchHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhhh
Q 012727 345 QNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWL 389 (457)
Q Consensus 345 ~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f~ 389 (457)
+...+.+.+.|..+... +.+.++|.+ +-|||++..+..+.+.+.
T Consensus 11 ~~~~~~~~~~L~~l~~~~~~~~i~l~I-nSpGG~v~~~~~i~~~i~ 55 (162)
T cd07013 11 DISANQFAAQLLFLGAVNPEKDIYLYI-NSPGGDVFAGMAIYDTIK 55 (162)
T ss_pred cHHHHHHHHHHHHHhcCCCCCCEEEEE-ECCCCcHHHHHHHHHHHH
Confidence 34667888888877654 578999999 778999999888888764
No 86
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=76.31 E-value=5.6 Score=40.34 Aligned_cols=69 Identities=28% Similarity=0.295 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEc
Q 012727 348 SGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVN 426 (457)
Q Consensus 348 ~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn 426 (457)
.+.+.+.++.+.. .++++|||++ +-|||....+..+++.+-.- ..++||+|.++
T Consensus 82 ~~~~~~~l~~~~~~~~vk~vvL~i-nSPGG~v~as~~i~~~l~~l------------------------~~~~PV~v~v~ 136 (317)
T COG0616 82 GDDIEEILRAARADPSVKAVVLRI-NSPGGSVVASELIARALKRL------------------------RAKKPVVVSVG 136 (317)
T ss_pred HHHHHHHHHHHhcCCCCceEEEEE-ECcCCchhHHHHHHHHHHHH------------------------hhcCCEEEEEC
Confidence 5566777777665 4699999998 56899988888888776321 11227888888
Q ss_pred CCCcchHHHHHHHHh
Q 012727 427 KGTASASEILAGALK 441 (457)
Q Consensus 427 ~~TaSaaE~~a~~lk 441 (457)
..++|++=++|.+-.
T Consensus 137 ~~AASGGY~IA~aAd 151 (317)
T COG0616 137 GYAASGGYYIALAAD 151 (317)
T ss_pred CeecchhhhhhccCC
Confidence 888887777766543
No 87
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=74.96 E-value=12 Score=35.44 Aligned_cols=80 Identities=19% Similarity=0.192 Sum_probs=53.5
Q ss_pred cEEEEEEeccCcchHHHHHHHHHHHhhCC-CCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCC
Q 012727 334 RIGYIKLTSFNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 412 (457)
Q Consensus 334 ~igYi~i~sF~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 412 (457)
++-||. ...+....+++...|..+...+ .+.|.|.+ +-+||++..+..|.+.+..
T Consensus 36 r~I~l~-g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~g~~I~d~i~~---------------------- 91 (207)
T PRK12553 36 RIIFLG-GQVDDASANDVMAQLLVLESIDPDRDITLYI-NSPGGSVTAGDAIYDTIQF---------------------- 91 (207)
T ss_pred eEEEEc-ceECHHHHHHHHHHHHHHHhCCCCCCEEEEE-eCCCCcHHHHHHHHHHHHh----------------------
Confidence 554444 2234456777888887776654 78899998 7788999999888877632
Q ss_pred CCCCCCCcEEEEEcCCCcchHHHHHHHHh
Q 012727 413 DALAASEPLAVLVNKGTASASEILAGALK 441 (457)
Q Consensus 413 ~~~~~~gpvvVLvn~~TaSaaE~~a~~lk 441 (457)
.+.|++.++.+.++|++-+++.+-.
T Consensus 92 ----~~~~v~t~~~G~aaSaa~lI~~ag~ 116 (207)
T PRK12553 92 ----IRPDVQTVCTGQAASAGAVLLAAGT 116 (207)
T ss_pred ----cCCCcEEEEEeehhhHHHHHHHcCC
Confidence 1235666666777777666666543
No 88
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=72.72 E-value=19 Score=35.77 Aligned_cols=65 Identities=25% Similarity=0.235 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEc
Q 012727 347 ASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVN 426 (457)
Q Consensus 347 ~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn 426 (457)
..+++.++++...+ .+++.|.+ +-+||....+..|+.++.. +..|+.|+|+
T Consensus 76 dse~v~raI~~~~~--~~~IdLii-~TpGG~v~AA~~I~~~l~~--------------------------~~~~v~v~VP 126 (285)
T PF01972_consen 76 DSEFVLRAIREAPK--DKPIDLII-HTPGGLVDAAEQIARALRE--------------------------HPAKVTVIVP 126 (285)
T ss_pred hHHHHHHHHHhcCC--CCceEEEE-ECCCCcHHHHHHHHHHHHh--------------------------CCCCEEEEEC
Confidence 34456666655432 34555555 5899999999999998742 2345666777
Q ss_pred CCCcchHHHHHHHH
Q 012727 427 KGTASASEILAGAL 440 (457)
Q Consensus 427 ~~TaSaaE~~a~~l 440 (457)
..+.||+-++|.+-
T Consensus 127 ~~A~SAGTlIALaA 140 (285)
T PF01972_consen 127 HYAMSAGTLIALAA 140 (285)
T ss_pred cccccHHHHHHHhC
Confidence 77777777666654
No 89
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=72.27 E-value=24 Score=33.20 Aligned_cols=71 Identities=24% Similarity=0.281 Sum_probs=47.9
Q ss_pred cchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEE
Q 012727 345 QNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAV 423 (457)
Q Consensus 345 ~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvV 423 (457)
.....++.++++.+.+ .++++|||++ +.+||++..+..+...+.. + ...++|++.
T Consensus 16 ~~~~~~l~~~l~~a~~d~~i~~ivl~~-~s~Gg~~~~~~~i~~~i~~----------------~-------~~~~kpvia 71 (208)
T cd07023 16 GIGADSLIEQLRKAREDDSVKAVVLRI-NSPGGSVVASEEIYREIRR----------------L-------RKAKKPVVA 71 (208)
T ss_pred CCCHHHHHHHHHHHHhCCCCcEEEEEE-ECCCCCHHHHHHHHHHHHH----------------H-------HhcCCcEEE
Confidence 3466788888888754 4699999999 4688887765444332210 0 012578888
Q ss_pred EEcCCCcchHHHHHHH
Q 012727 424 LVNKGTASASEILAGA 439 (457)
Q Consensus 424 Lvn~~TaSaaE~~a~~ 439 (457)
.+++.++|++=.++.+
T Consensus 72 ~v~g~~~s~g~~lA~a 87 (208)
T cd07023 72 SMGDVAASGGYYIAAA 87 (208)
T ss_pred EECCcchhHHHHHHhh
Confidence 8888888877666654
No 90
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=70.44 E-value=14 Score=33.76 Aligned_cols=43 Identities=16% Similarity=0.260 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHhhCC-CCEEEEecCCCCCCChHHHHHHHHhhh
Q 012727 346 NASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLFPEGIEIAKIWL 389 (457)
Q Consensus 346 ~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~GG~~~~a~~l~~~f~ 389 (457)
...+++...+..+...+ .+.++|-+ +-|||++..+..+.+.+-
T Consensus 21 ~~~~~i~~~l~~~~~~~~~~~i~l~i-nSpGG~v~~~~~i~~~l~ 64 (171)
T cd07017 21 EVANLIIAQLLYLESEDPKKPIYLYI-NSPGGSVTAGLAIYDTMQ 64 (171)
T ss_pred HHHHHHHHHHHHHHccCCCCceEEEE-ECCCCCHHHHHHHHHHHH
Confidence 45566777776666543 58999999 778999999988888763
No 91
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=69.50 E-value=21 Score=33.82 Aligned_cols=70 Identities=29% Similarity=0.321 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEE
Q 012727 345 QNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAV 423 (457)
Q Consensus 345 ~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvV 423 (457)
.....++.++++++.+ ..+++|||++. .+||....+..+...+..- .. .+||+.
T Consensus 24 ~~~~~~l~~~l~~a~~d~~i~~Vvl~~~-s~gg~~~~~~~l~~~l~~~-----------------------~~-~KpViA 78 (214)
T cd07022 24 LTSYEGIAAAIRAALADPDVRAIVLDID-SPGGEVAGVFELADAIRAA-----------------------RA-GKPIVA 78 (214)
T ss_pred cccHHHHHHHHHHHhhCCCCcEEEEEEe-CCCCcHHHHHHHHHHHHHH-----------------------hc-CCCEEE
Confidence 3456788888888764 47999999994 4777766655555443210 01 456666
Q ss_pred EEcCCCcchHHHHHHH
Q 012727 424 LVNKGTASASEILAGA 439 (457)
Q Consensus 424 Lvn~~TaSaaE~~a~~ 439 (457)
.+++.++|++=.++.+
T Consensus 79 ~v~g~a~s~gy~lA~~ 94 (214)
T cd07022 79 FVNGLAASAAYWIASA 94 (214)
T ss_pred EECCchhhHHHHHHhc
Confidence 7766666665555543
No 92
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=67.53 E-value=9 Score=35.19 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=54.1
Q ss_pred cEEEEEEeccCcchHHHHHHHHHHHh-hCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCC
Q 012727 334 RIGYIKLTSFNQNASGAVREAIDTLR-SNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 412 (457)
Q Consensus 334 ~igYi~i~sF~~~~~~~l~~~l~~l~-~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 412 (457)
++-+|. ..-++.....+.+.|..+. +...+.+.|-+ +.+||++..+..+.+.+..-
T Consensus 17 r~i~l~-g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~I-NSpGG~v~~g~~i~~~i~~~--------------------- 73 (182)
T PF00574_consen 17 RIIFLN-GPIDEESANRLISQLLYLENEDKNKPINIYI-NSPGGDVDAGLAIYDAIRSS--------------------- 73 (182)
T ss_dssp TEEEEE-SSBSHHHHHHHHHHHHHHHHHTSSSEEEEEE-EECEBCHHHHHHHHHHHHHS---------------------
T ss_pred eEEEEC-CccCHHHHHHHHHHHHHHhccCCCceEEEEE-cCCCCccHHHHHHHHHHHhc---------------------
Confidence 544443 2223445666777666663 34678899988 77999999999999887432
Q ss_pred CCCCCCCcEEEEEcCCCcchHHHHHHHHhc
Q 012727 413 DALAASEPLAVLVNKGTASASEILAGALKD 442 (457)
Q Consensus 413 ~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~ 442 (457)
+.|+.+.+.+.++|+|-+++.+-+.
T Consensus 74 -----~~~v~t~~~G~aaSaa~~i~~ag~~ 98 (182)
T PF00574_consen 74 -----KAPVTTVVLGLAASAATLIFLAGDK 98 (182)
T ss_dssp -----SSEEEEEEEEEEETHHHHHHHTSST
T ss_pred -----CCCeEEEEeCccccceehhhhcCCc
Confidence 3456666677777777776665544
No 93
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=66.57 E-value=33 Score=32.45 Aligned_cols=69 Identities=22% Similarity=0.245 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEE
Q 012727 347 ASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLV 425 (457)
Q Consensus 347 ~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLv 425 (457)
...++.+.++.+.+. ++++|||++ +.+||++....++...+. .+ ....+||+..+
T Consensus 22 ~~~~l~~~l~~a~~d~~v~~ivL~~-~s~Gg~~~~~~~~~~~l~----------------~~-------~~~~kpVia~v 77 (211)
T cd07019 22 GGDTTAAQIRDARLDPKVKAIVLRV-NSPGGSVTASEVIRAELA----------------AA-------RAAGKPVVVSA 77 (211)
T ss_pred CHHHHHHHHHHHhhCCCceEEEEEE-cCCCcCHHHHHHHHHHHH----------------HH-------HhCCCCEEEEE
Confidence 356788888887654 789999995 458999877655544320 00 02367888888
Q ss_pred cCCCcchHHHHHHH
Q 012727 426 NKGTASASEILAGA 439 (457)
Q Consensus 426 n~~TaSaaE~~a~~ 439 (457)
++.++|++=.++.+
T Consensus 78 ~g~a~s~gy~la~~ 91 (211)
T cd07019 78 GGAAASGGYWISTP 91 (211)
T ss_pred CCeehhHHHHHHHh
Confidence 88888887777765
No 94
>KOG1421 consensus Predicted signaling-associated protein (contains a PDZ domain) [General function prediction only]
Probab=58.46 E-value=25 Score=39.03 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=52.4
Q ss_pred CCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCC-CcEEEEE-EeCCeEEEEEEEe
Q 012727 239 SSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEG-SPVELTV-RSGAEIRHLALTR 310 (457)
Q Consensus 239 ~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G-~~v~L~v-~r~g~~~~vtl~r 310 (457)
.+.+++|+..-.||||.+ +|.+-..|++|||..+.+ +++++..++..+. .-+++.. .+++.+.-+++..
T Consensus 860 lp~gvyvt~rg~gspalq-~l~aa~fitavng~~t~~--lddf~~~~~~ipdnsyv~v~~mtfd~vp~~~s~k~ 930 (955)
T KOG1421|consen 860 LPEGVYVTSRGYGSPALQ-MLRAAHFITAVNGHDTNT--LDDFYHMLLEIPDNSYVQVKQMTFDGVPSIVSVKP 930 (955)
T ss_pred cCCceEEeecccCChhHh-hcchheeEEEecccccCc--HHHHHHHHhhCCCCceEEEEEeccCCCceEEEecc
Confidence 357899999999999998 999999999999999877 4788877765444 3455554 3466666555544
No 95
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=51.28 E-value=50 Score=31.06 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=50.9
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
.++-||. ...+....+.+...+..+... +.+.|.|.+ +-+||....+..|.+.+..
T Consensus 31 ~rii~i~-g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~I-nSpGG~v~~g~~I~d~i~~--------------------- 87 (200)
T PRK00277 31 ERIIFLG-GEVEDHMANLIVAQLLFLEAEDPDKDIYLYI-NSPGGSVTAGLAIYDTMQF--------------------- 87 (200)
T ss_pred CcEEEEC-CEECHHHHHHHHHHHHHhhccCCCCCEEEEE-ECCCCcHHHHHHHHHHHHh---------------------
Confidence 3555553 222344566677777666543 456788888 7789999998888887521
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
.+.|++.++++.++|++-+++.+
T Consensus 88 -----~~~~v~t~~~G~aaS~a~~I~~a 110 (200)
T PRK00277 88 -----IKPDVSTICIGQAASMGAFLLAA 110 (200)
T ss_pred -----cCCCEEEEEEeEeccHHHHHHhc
Confidence 12356666677777777666655
No 96
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=50.98 E-value=51 Score=30.80 Aligned_cols=42 Identities=14% Similarity=0.271 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhh
Q 012727 346 NASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIW 388 (457)
Q Consensus 346 ~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f 388 (457)
...+++...+..+... ..+.|+|.+ +-+||++..+..|.+.+
T Consensus 38 ~~~~~ii~~L~~l~~~~~~~~i~l~I-nSpGG~v~~g~~I~d~l 80 (191)
T TIGR00493 38 SVANLIVAQLLFLEAEDPEKDIYLYI-NSPGGSITAGLAIYDTM 80 (191)
T ss_pred HHHHHHHHHHHHhhccCCCCCEEEEE-ECCCCCHHHHHHHHHHH
Confidence 3455666666666543 356788888 66799999998888876
No 97
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=44.37 E-value=60 Score=30.55 Aligned_cols=80 Identities=15% Similarity=0.184 Sum_probs=51.2
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhhCC-CCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
++|-||- ...++..++++...|..|...+ .+.|.|=+ +-+||++..+..+.+.+-.
T Consensus 25 ~Riifl~-~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~I-NSpGG~v~~g~aIyd~m~~--------------------- 81 (196)
T PRK12551 25 ERIIFLG-EPVTSDSANRIVAQLLFLEAEDPEKDIYLYI-NSPGGSVYDGLGIFDTMQH--------------------- 81 (196)
T ss_pred CcEEEEC-CeecHHHHHHHHHHHHHhhccCCCCCEEEEE-eCCCcchhhHHHHHHHHHh---------------------
Confidence 4665543 1234445667777776665443 46777766 6678999998888777621
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
.+.||++++.+..+|+|-+++.+=
T Consensus 82 -----~~~~V~t~~~G~AaS~AslIl~aG 105 (196)
T PRK12551 82 -----VKPDVHTVCVGLAASMGAFLLCAG 105 (196)
T ss_pred -----cCCCEEEEEEEEehhHHHHHHhCC
Confidence 234577777777777777666653
No 98
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=41.35 E-value=59 Score=26.72 Aligned_cols=45 Identities=9% Similarity=0.166 Sum_probs=30.7
Q ss_pred cEEEEEEec-cCcchHHHHHHHH-HHHhhCCCCEEEEecCCCCCCCh
Q 012727 334 RIGYIKLTS-FNQNASGAVREAI-DTLRSNSVNAFVLDLRDNSGGLF 378 (457)
Q Consensus 334 ~igYi~i~s-F~~~~~~~l~~~l-~~l~~~~~~~LIlDLR~N~GG~~ 378 (457)
++..+++.. +.....+.+++.+ ..+.+.+.+.||||+++=+-=+.
T Consensus 10 ~~~v~~l~G~L~~~~a~~~~~~l~~~~~~~~~~~vvlDls~v~~iDs 56 (109)
T cd07041 10 GVLVLPLIGDLDDERAEQLQERLLEAISRRRARGVIIDLTGVPVIDS 56 (109)
T ss_pred CEEEEeeeeeECHHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhcH
Confidence 566777765 5555677887765 44544678999999997654443
No 99
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=39.15 E-value=1.7e+02 Score=28.15 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=50.7
Q ss_pred CcEEEEEEe------ccCcchHHHHHHHHHHHhhCCCCEEEEecCCCC-----CCChHHHHHHHHhhhCCCcEEEEEcCC
Q 012727 333 PRIGYIKLT------SFNQNASGAVREAIDTLRSNSVNAFVLDLRDNS-----GGLFPEGIEIAKIWLDKGVIVYICDSR 401 (457)
Q Consensus 333 ~~igYi~i~------sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~-----GG~~~~a~~l~~~f~~~~~~~~~~~~~ 401 (457)
++|+.|.++ .++.....++.++++++.+.+++.||| ++++ |+++........ +. .
T Consensus 8 ~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~~~vr~vvl--~g~g~~F~aG~Dl~~~~~~~~-~~-----------~ 73 (243)
T PRK07854 8 GQVLTIELQRPERRNALNAELCEELREAVRKAVDESARAIVL--TGQGTVFCAGADLSGDVYADD-FP-----------D 73 (243)
T ss_pred CCEEEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCceEEEE--ECCCCceecccCCccchhHHH-HH-----------H
Confidence 467777774 355556778888888876557888887 4543 444431000000 00 0
Q ss_pred CceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 402 GVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 402 ~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
.....+.. -...++|+|..+++.+..++-.++.+
T Consensus 74 ~~~~~~~~----l~~~~kP~Iaav~G~a~GgG~~lal~ 107 (243)
T PRK07854 74 ALIEMLHA----IDAAPVPVIAAINGPAIGAGLQLAMA 107 (243)
T ss_pred HHHHHHHH----HHhCCCCEEEEecCcccccHHHHHHh
Confidence 00000000 01357899999999998887776664
No 100
>cd07043 STAS_anti-anti-sigma_factors Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation. Anti-anti-sigma factors play an important role in the regulation of several sigma factors and their corresponding anti-sigma factors. Upon dephosphorylation they bind the anti-sigma factor and induce the release of the sigma factor from the anti-sigma factor. In a feedback mechanism the anti-anti-sigma factor can be inactivated via phosphorylation by the anti-sigma factor. Well studied examples from Bacillus subtilis are SpoIIAA (regulating sigmaF and sigmaC which play an important role in sporulation) and RsbV (regulating sigmaB involved in the general stress response). The STAS domain is also found in the C- terminal region of sulphate transporters and stressosomes.
Probab=36.52 E-value=1.6e+02 Score=23.01 Aligned_cols=53 Identities=17% Similarity=0.142 Sum_probs=33.7
Q ss_pred cEEEEEEec-cCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHH
Q 012727 334 RIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAK 386 (457)
Q Consensus 334 ~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~ 386 (457)
++..+++.. +.....+.+.+.+......+.+.+|||+++-..=+...+..+..
T Consensus 8 ~~~ii~l~G~l~~~~~~~~~~~~~~~~~~~~~~viid~~~v~~iDs~g~~~L~~ 61 (99)
T cd07043 8 GVLVVRLSGELDAATAPELREALEELLAEGPRRLVLDLSGVTFIDSSGLGVLLG 61 (99)
T ss_pred CEEEEEEeceecccchHHHHHHHHHHHHcCCCEEEEECCCCCEEcchhHHHHHH
Confidence 555566543 33344567777776655545789999999988776555444443
No 101
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=35.32 E-value=1.4e+02 Score=28.19 Aligned_cols=80 Identities=15% Similarity=0.174 Sum_probs=50.0
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhhCC-CCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
.+|.||-- ...+..++.+-..|-.|...+ .+.|-|=+ +-+||++..+..|.+.+-.
T Consensus 27 ~Riifl~~-~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~I-NSpGG~v~~GlaIyd~m~~--------------------- 83 (201)
T PRK14513 27 DRIIFVGT-PIESQMANTIVAQLLLLDSQNPEQEIQMYI-NCPGGEVYAGLAIYDTMRY--------------------- 83 (201)
T ss_pred CCEEEECC-EEcHHHHHHHHHHHHHhhccCCCCCEEEEE-ECCCCchhhHHHHHHHHHh---------------------
Confidence 47766632 233445666666666665443 35566655 6679999998888877632
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
.+.||.+++.+..+|+|-+++.+=
T Consensus 84 -----~~~~V~Ti~~G~AaS~As~il~aG 107 (201)
T PRK14513 84 -----IKAPVSTICVGIAMSMGSVLLMAG 107 (201)
T ss_pred -----cCCCEEEEEEeeehhhHHHHHhcC
Confidence 234577777777777776665543
No 102
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=34.97 E-value=2.1e+02 Score=31.68 Aligned_cols=85 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCcEEEEEEeccCcc--------hHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCC
Q 012727 331 SSPRIGYIKLTSFNQN--------ASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSR 401 (457)
Q Consensus 331 ~~~~igYi~i~sF~~~--------~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~ 401 (457)
..++|+.|.+..--.+ ..+.+.+.++++.+ .++++|||.+- .|||+...+..+...+.
T Consensus 306 ~~~~vavI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrin-SpGGs~~ase~i~~~i~------------ 372 (584)
T TIGR00705 306 VQDKIGIVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRIN-SPGGSVFASEIIRRELA------------ 372 (584)
T ss_pred CCCeEEEEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEec-CCCCCHHHHHHHHHHHH------------
Q ss_pred CceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 402 GVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 402 ~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
.-....+||++.+++.++|++=.++.+
T Consensus 373 -----------~~~~~gKPVva~~~g~aaSggY~iA~a 399 (584)
T TIGR00705 373 -----------RAQARGKPVIVSMGAMAASGGYWIASA 399 (584)
T ss_pred -----------HHHhCCCcEEEEECCccccHHHHHHHh
No 103
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=33.57 E-value=1.4e+02 Score=28.10 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=35.8
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhhh
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWL 389 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f~ 389 (457)
++|-||- ...++...+.+-..+-.|... +.+.|.|=+ +-+||++..+..|.+.+-
T Consensus 30 ~Riifl~-~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~I-NSpGG~v~~g~aIyd~m~ 85 (200)
T CHL00028 30 ERLLFLG-QEVDDEIANQLIGLMVYLSIEDDTKDLYLFI-NSPGGSVISGLAIYDTMQ 85 (200)
T ss_pred CCEEEEC-CeecHHHHHHHHHHHHHHhccCCCCCEEEEE-eCCCcchhhHHHHHHHHH
Confidence 4675654 223344566777777666644 356676666 667899998888887763
No 104
>PRK11778 putative inner membrane peptidase; Provisional
Probab=31.91 E-value=2.4e+02 Score=28.87 Aligned_cols=84 Identities=23% Similarity=0.278 Sum_probs=44.1
Q ss_pred CcEEEEEEecc-CcchHHHHHHHHHHHh--hCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeC
Q 012727 333 PRIGYIKLTSF-NQNASGAVREAIDTLR--SNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDT 409 (457)
Q Consensus 333 ~~igYi~i~sF-~~~~~~~l~~~l~~l~--~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~ 409 (457)
+.|+.|.+..- ..+....+++.+..+. ..+.+++||++- .|||.....-.+++.+. . +.
T Consensus 90 ~~v~VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLrid-SpGG~v~~s~~a~~~l~-~---------------lr- 151 (330)
T PRK11778 90 PRLFVLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLE-SPGGVVHGYGLAASQLQ-R---------------LR- 151 (330)
T ss_pred CeEEEEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEe-CCCCchhHHHHHHHHHH-H---------------HH-
Confidence 46777776643 2223334445554432 123389999984 56776544322222211 0 00
Q ss_pred CCCCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 410 DGTDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 410 ~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
...+||++.+++.++|++=.+|.+-
T Consensus 152 ------~~~kpVva~v~~~AASggY~iAsaA 176 (330)
T PRK11778 152 ------DAGIPLTVAVDKVAASGGYMMACVA 176 (330)
T ss_pred ------hcCCCEEEEECCchhhHHHHHHHhC
Confidence 1245777777777777776666553
No 105
>PRK10949 protease 4; Provisional
Probab=31.70 E-value=2.7e+02 Score=31.02 Aligned_cols=56 Identities=20% Similarity=0.160 Sum_probs=36.6
Q ss_pred CCcEEEEEEecc-Cc-------chHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhh
Q 012727 332 SPRIGYIKLTSF-NQ-------NASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIW 388 (457)
Q Consensus 332 ~~~igYi~i~sF-~~-------~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f 388 (457)
.++|+.|.+..- .. -..+.+.+.|++..+ .++++|||++- .|||....+..|...+
T Consensus 325 ~~~Iavi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrIn-SpGGs~~ase~i~~~i 389 (618)
T PRK10949 325 GGSIAVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVN-SPGGSVTASEVIRAEL 389 (618)
T ss_pred CCeEEEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEec-CCCCcHHHHHHHHHHH
Confidence 357777777553 11 124566777776653 58999999996 5677766666666554
No 106
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=30.54 E-value=78 Score=27.02 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=21.9
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCCC----CChHH
Q 012727 351 VREAIDTLRSNSVNAFVLDLRDNSG----GLFPE 380 (457)
Q Consensus 351 l~~~l~~l~~~~~~~LIlDLR~N~G----G~~~~ 380 (457)
+++.++.+++.+++ +++|+|-+|. |.-..
T Consensus 2 ~e~f~~~l~~~~i~-~lVDVR~~P~S~~~~~~k~ 34 (122)
T PF04343_consen 2 IERFYDLLKKNGIR-VLVDVRLWPRSRKPGFNKE 34 (122)
T ss_pred HHHHHHHHHHCCCe-EEEEECCCCCCCCCCCCHH
Confidence 45566666667775 9999999999 87654
No 107
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=29.04 E-value=2e+02 Score=23.27 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=33.0
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHH
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPE 380 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~ 380 (457)
+++.+|++.. +.......+++.+.++.. .+.+.+|||+.+-..=+...
T Consensus 11 ~~~~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvidls~v~~iDssg 60 (108)
T TIGR00377 11 EGVVIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVLDLEDLEFMDSSG 60 (108)
T ss_pred CCEEEEEEecccccccHHHHHHHHHHHHHhcCCCeEEEECCCCeEEcccc
Confidence 3566777754 333456678887776654 47899999999887666543
No 108
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=27.96 E-value=1.7e+02 Score=24.18 Aligned_cols=65 Identities=18% Similarity=0.142 Sum_probs=41.8
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHHHhhCC---------CCEEEEecCCCCCCChHHHHH---HHHhhhCCCcEEEE
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDTLRSNS---------VNAFVLDLRDNSGGLFPEGIE---IAKIWLDKGVIVYI 397 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~---------~~~LIlDLR~N~GG~~~~a~~---l~~~f~~~~~~~~~ 397 (457)
+++..+++.. +.....+.+++.+.++...+ .+.+|||+++-..=+...... +...+-.++..++.
T Consensus 8 ~~v~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l 85 (117)
T PF01740_consen 8 DGVLIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVL 85 (117)
T ss_dssp TTEEEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCEEEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 4677788866 34456778888888776655 589999999998766543332 33334434544433
No 109
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=24.75 E-value=1.6e+02 Score=28.23 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=51.0
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhhCC-CCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
.+|.||- ...++..++.+...|..|...+ .+.|.|=+ +-+||++..+..|.+.+-
T Consensus 54 ~Riifl~-~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyI-NSpGGsv~aGlaIyd~m~---------------------- 109 (221)
T PRK14514 54 DRIIFLG-TQIDDYTANTIQAQLLYLDSVDPGKDISIYI-NSPGGSVYAGLGIYDTMQ---------------------- 109 (221)
T ss_pred CcEEEEC-CEEcHHHHHHHHHHHHHHhccCCCCCEEEEE-ECCCcchhhHHHHHHHHH----------------------
Confidence 3565553 2234445667777666665432 35565555 778999999888877652
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
..+.||.+++.+..+|+|-+++.+=
T Consensus 110 ----~~~~~V~tv~~G~AAS~AslIl~aG 134 (221)
T PRK14514 110 ----FISSDVATICTGMAASMASVLLVAG 134 (221)
T ss_pred ----hcCCCEEEEEEEEehhHHHHHHhcC
Confidence 1244677777788888777766664
No 110
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=24.37 E-value=3.5e+02 Score=21.82 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=33.0
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHHHh-hCCCCEEEEecCCCCCCChHH
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDTLR-SNSVNAFVLDLRDNSGGLFPE 380 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~l~-~~~~~~LIlDLR~N~GG~~~~ 380 (457)
+++..+++.. +.-...+.+++.+.++- +.+.+.+|||+++-.-=+...
T Consensus 7 ~~~~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDssg 56 (106)
T TIGR02886 7 GDVLIVRLSGELDHHTAERVRRKIDDAIERRPIKHLILNLKNVTFMDSSG 56 (106)
T ss_pred CCEEEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEecchH
Confidence 3667777764 33346777888876653 346899999999988655443
No 111
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.75 E-value=2e+02 Score=23.25 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=30.4
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHH-HhhCCCCEEEEecCCCCCCCh
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDT-LRSNSVNAFVLDLRDNSGGLF 378 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~-l~~~~~~~LIlDLR~N~GG~~ 378 (457)
+++..+++.. +.-...+.+++.+.+ +.+.+.+.+|||+.+-.-=+.
T Consensus 7 ~~v~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDls~v~~iDs 54 (100)
T cd06844 7 DDYWVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDISALEFMDS 54 (100)
T ss_pred CCEEEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEECCCCcEEcH
Confidence 3677777765 444566777777654 333458999999986665443
No 112
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=22.82 E-value=82 Score=30.53 Aligned_cols=98 Identities=17% Similarity=0.154 Sum_probs=52.3
Q ss_pred CcEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCcee
Q 012727 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRD 405 (457)
Q Consensus 333 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~ 405 (457)
++|++|.++. ++....+++.++++++.+ .+++.||| ++++ +.+..+.++... ......- ........+
T Consensus 13 ~~v~~i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g-~~F~aG~Dl~~~-~~~~~~~-~~~~~~~~~ 87 (259)
T PRK06688 13 DGVLTITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVL--TGAG-RAFSAGGDIKDF-PKAPPKP-PDELAPVNR 87 (259)
T ss_pred CCEEEEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCC-CCccCccCHHHH-hccCcch-HHHHHHHHH
Confidence 4677776654 444466788888888765 46889998 4433 333333333221 1110000 000000000
Q ss_pred eEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 406 IYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 406 ~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
.+. .-...++|+|..+|+.+...+-.++.+
T Consensus 88 ~~~----~l~~~~kp~Iaav~G~a~GgG~~lal~ 117 (259)
T PRK06688 88 FLR----AIAALPKPVVAAVNGPAVGVGVSLALA 117 (259)
T ss_pred HHH----HHHcCCCCEEEEECCeeecHHHHHHHh
Confidence 110 012468999999999999887776665
No 113
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=22.28 E-value=1.4e+02 Score=28.17 Aligned_cols=43 Identities=33% Similarity=0.549 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCChHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCCCccccCh
Q 012727 147 LFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEP 209 (457)
Q Consensus 147 ~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~ 209 (457)
.++++..+++++|.++. +.....+..+++|++. .|||++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~-~~~~~~~~~~ 49 (211)
T cd07560 7 KLEEVLELIKKNYVDPV-------------------DDEKLIEGAIKGMLSS-LDPYSRYLTP 49 (211)
T ss_pred HHHHHHHHHHHHHhccC-------------------CHHHHHHHHHHHHHHc-CCCcceeeCc
Confidence 34566677888887652 2234456788999999 7999999886
No 114
>KOG4371 consensus Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain [Signal transduction mechanisms]
Probab=21.96 E-value=91 Score=36.47 Aligned_cols=70 Identities=24% Similarity=0.400 Sum_probs=43.9
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.|+|+.+.... ..+++++..+..++.|..-| ++.||.+++.||+++........+..+. ..-+.+.+++.
T Consensus 1257 ~~~~~~~~~~~----~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~-~v~~p~~~~~~ 1327 (1332)
T KOG4371|consen 1257 ATLGLSLAKRT----MSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLK-LVQGPVQITVT 1327 (1332)
T ss_pred ccccccccccC----cCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhh-hccCchhheeh
Confidence 55666554332 24677777666666665555 9999999999999999876544444333 22234444443
No 115
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=20.23 E-value=1.4e+02 Score=28.95 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=50.5
Q ss_pred CcEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEecCCCC------CCChHHHHHHHHhhhCCCcEEEEEc
Q 012727 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNS------GGLFPEGIEIAKIWLDKGVIVYICD 399 (457)
Q Consensus 333 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~------GG~~~~a~~l~~~f~~~~~~~~~~~ 399 (457)
++|++|.++. ++....+++.++++++.+ .+++.||| ++++ |+++.+. .. ..+.+..
T Consensus 12 ~~v~~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~---~~-~~~~~~~----- 80 (259)
T PRK06494 12 GHVTIVTLNRPEVMNALHLDAHFELEEVFDDFAADPEQWVAIV--TGAGDKAFSAGNDLKEQ---AA-GGKRGWP----- 80 (259)
T ss_pred CCEEEEEEcCccccCCCCHHHHHHHHHHHHHHhhCCCcEEEEE--EcCCCCceeccccHHhH---hh-cCcchhh-----
Confidence 3566666653 344456788888888754 46788887 4443 5555431 11 0000000
Q ss_pred CCCceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 400 SRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
....... . .....++|+|..+|+.+..++-.++.+
T Consensus 81 ~~~~~~~-~----~~~~~~kPvIaav~G~a~GgG~~lala 115 (259)
T PRK06494 81 ESGFGGL-T----SRFDLDKPIIAAVNGVAMGGGFELALA 115 (259)
T ss_pred hHHHHHH-H----HHhcCCCCEEEEECCEEecHHHHHHHh
Confidence 0000000 0 012458999999999999887777665
No 116
>cd07042 STAS_SulP_like_sulfate_transporter Sulphate Transporter and Anti-Sigma factor antagonist domain of SulP-like sulfate transporters, plays a role in the function and regulation of the transport activity, proposed general NTP binding function. The SulP family is a large and diverse family of anion transporters, with members from eubacteria, plants, fungi, and mammals. They contain 10 to 14 transmembrane helices which form the catalytic core of the protein and a C-terminal extension, the STAS (Sulphate Transporter and AntiSigma factor antagonist) domain which plays a role in the function and regulation of the transport activity. The STAS domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function.
Probab=20.21 E-value=4.2e+02 Score=20.89 Aligned_cols=49 Identities=10% Similarity=0.087 Sum_probs=31.2
Q ss_pred CCcEEEEEEec-cCcchHHHHHHHHHHHhhCC--CCEEEEecCCCCCCChHH
Q 012727 332 SPRIGYIKLTS-FNQNASGAVREAIDTLRSNS--VNAFVLDLRDNSGGLFPE 380 (457)
Q Consensus 332 ~~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~--~~~LIlDLR~N~GG~~~~ 380 (457)
.+++.++++.. +.-...+.+.+.+.+..+.. .+.+|||+++-..=+...
T Consensus 7 ~~~~~v~~l~G~l~~~~~~~l~~~~~~~~~~~~~~~~lilD~~~v~~iDss~ 58 (107)
T cd07042 7 PPGVLIYRIDGPLFFGNAEYFKDRLLRLVDEDPPLKVVILDLSAVNFIDSTA 58 (107)
T ss_pred CCCEEEEEecCceEeehHHHHHHHHHHHhccCCCceEEEEECCCCchhhHHH
Confidence 34677777765 22234567777776655433 589999999876554433
Done!