Query 012727
Match_columns 457
No_of_seqs 339 out of 3152
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 15:04:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fc6_A Photosystem II D1 prote 100.0 1.4E-52 4.8E-57 431.9 38.3 312 142-457 3-322 (388)
2 1k32_A Tricorn protease; prote 100.0 4.4E-40 1.5E-44 375.8 25.2 286 140-455 656-963 (1045)
3 3k50_A Putative S41 protease; 100.0 9.4E-37 3.2E-41 314.2 21.0 223 223-457 73-329 (403)
4 3dor_A Protein CT_858, CPAF; m 99.9 1.4E-23 4.7E-28 221.0 27.7 293 144-457 7-493 (583)
5 1j7x_A IRBP, interphotorecepto 99.9 4.8E-23 1.6E-27 204.9 15.3 125 333-457 106-241 (302)
6 4fgm_A Aminopeptidase N family 99.7 1.4E-17 4.7E-22 179.5 12.7 181 111-313 373-566 (597)
7 2kom_A Partitioning defective 99.4 1.2E-12 4E-17 112.5 7.9 105 197-301 14-120 (121)
8 2koj_A Partitioning defective 99.3 2.9E-12 9.9E-17 107.9 8.0 100 203-302 1-102 (111)
9 2byg_A Channel associated prot 99.2 1.3E-11 4.3E-16 105.4 6.3 101 199-302 12-115 (117)
10 2r4h_A Membrane-associated gua 99.2 7E-11 2.4E-15 99.8 8.2 101 196-302 9-110 (112)
11 2edz_A PDZ domain-containing p 99.1 4.8E-12 1.6E-16 107.3 0.3 95 192-303 5-99 (114)
12 2vz5_A TAX1-binding protein 3; 99.1 1.4E-10 4.6E-15 102.1 8.7 87 223-309 37-132 (139)
13 2jre_A C60-1 PDZ domain peptid 99.1 8E-11 2.7E-15 98.5 6.2 96 206-302 5-105 (108)
14 1qau_A Neuronal nitric oxide s 99.1 2.1E-10 7.2E-15 96.6 8.4 86 221-310 10-96 (112)
15 2jxo_A Ezrin-radixin-moesin-bi 99.1 1E-10 3.4E-15 96.1 5.4 92 201-302 3-94 (98)
16 2dm8_A INAD-like protein; PDZ 99.1 7.9E-11 2.7E-15 99.8 4.7 97 201-302 7-104 (116)
17 3b76_A E3 ubiquitin-protein li 99.1 2.5E-10 8.5E-15 97.6 7.6 100 199-300 12-112 (118)
18 1wfv_A Membrane associated gua 99.0 3.9E-11 1.3E-15 99.4 2.0 95 204-302 2-97 (103)
19 2v90_A PDZ domain-containing p 99.0 1.4E-10 4.9E-15 94.9 5.3 78 224-303 14-91 (96)
20 2pkt_A PDZ and LIM domain prot 99.0 2.1E-10 7.2E-15 92.9 6.2 76 224-303 13-88 (91)
21 2w4f_A Protein LAP4; structura 99.0 3.1E-10 1.1E-14 92.8 7.3 81 222-303 12-95 (97)
22 1x5q_A LAP4 protein; PDZ domai 99.0 3E-10 1E-14 95.3 7.1 82 221-303 23-107 (110)
23 1wg6_A Hypothetical protein (r 99.0 7E-11 2.4E-15 102.2 3.1 103 200-302 10-123 (127)
24 2he4_A Na(+)/H(+) exchange reg 99.0 1E-09 3.6E-14 88.5 9.3 74 224-302 15-88 (90)
25 2pa1_A PDZ and LIM domain prot 99.0 7.2E-10 2.5E-14 88.9 8.1 75 224-302 12-86 (87)
26 2eaq_A LIM domain only protein 99.0 3.4E-10 1.1E-14 91.4 6.1 73 223-301 16-89 (90)
27 2iwq_A Multiple PDZ domain pro 99.0 6.1E-10 2.1E-14 95.8 7.6 99 198-301 14-119 (123)
28 3l4f_D SH3 and multiple ankyri 99.0 7.7E-10 2.6E-14 96.3 8.3 101 198-302 16-125 (132)
29 1v6b_A Harmonin isoform A1; st 99.0 3.6E-10 1.2E-14 96.4 6.1 98 200-300 3-106 (118)
30 1n7e_A AMPA receptor interacti 99.0 9.7E-10 3.3E-14 90.1 8.4 75 224-302 16-91 (97)
31 2vsp_A PDZ domain-containing p 99.0 2.9E-10 1E-14 92.1 5.1 74 225-303 15-88 (91)
32 2yuy_A RHO GTPase activating p 99.0 6.7E-11 2.3E-15 102.1 1.2 95 201-302 26-121 (126)
33 1d5g_A Human phosphatase HPTP1 99.0 1.5E-09 5E-14 88.7 9.1 78 224-302 16-94 (96)
34 2dls_A PDZ-rhogef, RHO guanine 99.0 1.7E-09 5.8E-14 88.0 9.4 69 224-301 19-87 (93)
35 3sfj_A TAX1-binding protein 3; 99.0 1.6E-09 5.6E-14 89.7 9.4 79 222-300 17-104 (104)
36 1uep_A Membrane associated gua 99.0 2.9E-10 1E-14 94.4 4.7 78 222-302 18-97 (103)
37 2db5_A INAD-like protein; PDZ 99.0 6.3E-10 2.1E-14 96.1 6.8 77 224-301 37-115 (128)
38 1g9o_A NHE-RF; PDZ domain, com 99.0 1.4E-09 5E-14 87.8 8.3 74 224-301 14-87 (91)
39 2opg_A Multiple PDZ domain pro 99.0 1.5E-09 5E-14 89.0 8.4 77 224-303 15-92 (98)
40 2uzc_A Human pdlim5, PDZ and L 99.0 1.3E-09 4.3E-14 87.6 7.9 75 224-302 13-87 (88)
41 2qkv_A Inactivation-NO-after-p 99.0 1.1E-09 3.6E-14 89.8 7.4 72 222-300 18-90 (96)
42 1r6j_A Syntenin 1; PDZ, membra 99.0 1.1E-09 3.8E-14 87.5 7.1 66 223-299 15-80 (82)
43 2l97_A HTRA, putative serine p 99.0 2.1E-09 7E-14 93.8 9.3 70 240-312 56-126 (134)
44 3bpu_A Membrane-associated gua 99.0 2.3E-09 7.8E-14 86.1 8.9 73 224-302 14-87 (88)
45 2f5y_A Regulator of G-protein 99.0 1.8E-09 6.3E-14 87.4 8.4 71 224-302 14-84 (91)
46 3i18_A LMO2051 protein; alpha- 98.9 3.5E-09 1.2E-13 87.5 10.1 70 240-312 6-76 (100)
47 2q3g_A PDZ and LIM domain prot 98.9 1.5E-09 5.3E-14 87.3 7.7 75 224-302 13-87 (89)
48 4amh_A Disks large homolog 1; 98.9 4.5E-09 1.5E-13 87.8 10.8 85 224-309 13-103 (106)
49 2awx_A Synapse associated prot 98.9 1.8E-09 6.3E-14 89.8 8.2 86 224-310 14-102 (105)
50 1kwa_A Hcask/LIN-2 protein; PD 98.9 1.2E-09 4E-14 88.2 6.8 73 224-302 13-86 (88)
51 2jil_A GRIP1 protein, glutamat 98.9 8.9E-10 3.1E-14 90.1 6.2 79 224-303 14-94 (97)
52 2djt_A Unnamed protein product 98.9 6.9E-10 2.3E-14 92.1 5.5 78 223-302 21-99 (104)
53 1b8q_A Protein (neuronal nitri 98.9 4E-10 1.4E-14 97.1 4.2 86 221-310 17-103 (127)
54 1wh1_A KIAA1095 protein; PDZ d 98.9 5.4E-10 1.8E-14 96.1 4.8 82 220-304 28-110 (124)
55 2iwo_A Multiple PDZ domain pro 98.9 2.4E-10 8.2E-15 97.9 2.6 80 224-304 36-116 (120)
56 1ihj_A INAD; intermolecular di 98.9 1.3E-09 4.6E-14 89.3 6.9 78 224-302 17-98 (98)
57 2kjp_A Uncharacterized protein 98.9 4.5E-10 1.6E-14 91.5 4.0 69 242-313 2-71 (91)
58 3ngh_A PDZ domain-containing p 98.9 7.5E-10 2.6E-14 92.2 5.3 62 240-302 25-86 (106)
59 2dmz_A INAD-like protein; PDZ 98.9 6.6E-10 2.3E-14 96.0 4.8 79 223-302 26-107 (129)
60 2iwn_A Multiple PDZ domain pro 98.9 1.9E-09 6.4E-14 87.9 7.0 80 222-302 13-94 (97)
61 2vsv_A Rhophilin-2; scaffold p 98.9 3.3E-09 1.1E-13 89.3 8.7 71 224-301 34-104 (109)
62 2i04_A Membrane-associated gua 98.9 4E-09 1.4E-13 84.1 8.7 73 224-299 11-85 (85)
63 2kl1_A YLBL protein; structure 98.9 2E-09 6.8E-14 88.0 7.0 71 240-313 4-75 (94)
64 3cyy_A Tight junction protein 98.9 3.4E-09 1.1E-13 85.6 8.3 66 242-308 24-90 (92)
65 1rgw_A ZAsp protein; PDZ, cyph 98.9 2.7E-09 9.2E-14 85.0 7.5 74 224-301 11-84 (85)
66 1i16_A Interleukin 16, LCF; cy 98.9 1.9E-09 6.5E-14 93.5 7.0 79 223-301 39-118 (130)
67 3axa_A Afadin, nectin-3, prote 98.9 3.3E-09 1.1E-13 88.3 8.2 78 224-302 21-99 (106)
68 1w9e_A Syntenin 1; cell adhesi 98.9 3.8E-09 1.3E-13 95.1 9.3 82 223-310 15-96 (166)
69 2vwr_A Ligand of NUMB protein 98.9 3.4E-09 1.2E-13 86.4 8.0 74 224-302 16-90 (95)
70 1uez_A KIAA1526 protein; PDZ d 98.9 1.5E-09 5E-14 89.7 5.8 77 221-302 18-94 (101)
71 3r68_A Na(+)/H(+) exchange reg 98.9 2.4E-09 8.4E-14 87.1 7.0 73 224-301 16-88 (95)
72 2eeh_A PDZ domain-containing p 98.9 5.9E-09 2E-13 85.9 9.3 73 225-302 23-95 (100)
73 3suz_A Amyloid beta A4 precurs 98.9 4.6E-10 1.6E-14 115.0 3.0 147 145-308 152-301 (388)
74 2jik_A Synaptojanin-2 binding 98.9 4.2E-09 1.4E-13 86.8 8.2 78 224-302 18-98 (101)
75 2d90_A PDZ domain containing p 98.9 2.3E-09 7.9E-14 88.6 6.6 74 224-302 17-90 (102)
76 1m5z_A GRIP, AMPA receptor int 98.9 6.7E-09 2.3E-13 83.8 9.0 72 224-300 19-90 (91)
77 1wi4_A Synip, syntaxin binding 98.9 2.7E-09 9.4E-14 89.6 6.9 78 224-302 25-106 (109)
78 2fcf_A Multiple PDZ domain pro 98.9 4.5E-09 1.6E-13 86.9 8.1 61 241-302 39-100 (103)
79 3tsv_A Tight junction protein 98.9 3.4E-09 1.2E-13 91.2 7.5 74 224-302 39-113 (124)
80 1wif_A RSGI RUH-020, riken cDN 98.9 2.1E-09 7.1E-14 92.9 6.0 74 221-300 35-110 (126)
81 2fe5_A Presynaptic protein SAP 98.9 7.5E-09 2.6E-13 84.0 9.0 77 224-301 14-93 (94)
82 1um1_A KIAA1849 protein, RSGI 98.9 7E-09 2.4E-13 86.9 9.0 80 224-304 19-99 (110)
83 2i1n_A Discs, large homolog 3; 98.9 2.3E-09 7.7E-14 88.6 5.8 79 224-303 15-96 (102)
84 2eeg_A PDZ and LIM domain prot 98.9 2.8E-09 9.6E-14 86.8 6.3 74 225-302 19-92 (94)
85 2fne_A Multiple PDZ domain pro 98.9 3.1E-09 1E-13 90.5 6.7 79 224-303 36-115 (117)
86 2qg1_A Multiple PDZ domain pro 98.9 5.5E-09 1.9E-13 84.5 7.9 73 224-301 16-89 (92)
87 2kv8_A RGS12, regulator of G-p 98.9 2.3E-09 8E-14 85.1 5.5 69 224-300 13-81 (83)
88 3khf_A Microtubule-associated 98.9 4.6E-09 1.6E-13 86.2 7.4 60 242-302 35-94 (99)
89 1wf7_A Enigma homologue protei 98.8 6.1E-10 2.1E-14 92.4 2.0 82 224-309 15-96 (103)
90 1whd_A RGS3, regulator of G-pr 98.8 7E-10 2.4E-14 91.6 2.3 73 221-301 23-95 (100)
91 1ueq_A Membrane associated gua 98.8 9E-09 3.1E-13 88.2 9.3 76 223-301 29-106 (123)
92 2o2t_A Multiple PDZ domain pro 98.8 5.1E-10 1.7E-14 95.0 1.5 79 224-303 32-112 (117)
93 2pzd_A Serine protease HTRA2; 98.8 6.4E-09 2.2E-13 87.6 8.2 69 240-312 34-102 (113)
94 2zpm_A Regulator of sigma E pr 98.8 3E-09 1E-13 85.9 5.9 67 242-310 5-71 (91)
95 2g5m_B Neurabin-2; spinophilin 98.8 8.4E-10 2.9E-14 93.0 2.6 80 224-304 15-98 (113)
96 2yt7_A Amyloid beta A4 precurs 98.8 6.1E-09 2.1E-13 86.1 7.7 76 224-300 21-98 (101)
97 2i6v_A General secretion pathw 98.8 4.6E-09 1.6E-13 84.5 6.7 66 242-309 20-86 (87)
98 2ejy_A 55 kDa erythrocyte memb 98.8 3.8E-09 1.3E-13 87.1 6.4 71 224-300 24-95 (97)
99 1vb7_A PDZ and LIM domain 2; P 98.8 2.2E-09 7.6E-14 87.4 4.9 76 224-303 16-91 (94)
100 1ujv_A Membrane associated gua 98.8 5.7E-09 2E-13 85.6 7.4 74 221-302 18-92 (96)
101 2kjd_A Sodium/hydrogen exchang 98.8 6E-10 2.1E-14 96.0 1.5 85 223-311 19-105 (128)
102 3r0h_A INAD, inactivation-NO-a 98.8 9.6E-09 3.3E-13 95.3 9.8 102 199-303 6-110 (206)
103 1wi2_A Riken cDNA 2700099C19; 98.8 6.2E-09 2.1E-13 86.4 7.5 74 224-302 27-100 (104)
104 3qik_A Phosphatidylinositol 3, 98.8 3.9E-09 1.3E-13 87.3 6.1 69 224-298 28-98 (101)
105 1va8_A Maguk P55 subfamily mem 98.8 6.2E-09 2.1E-13 87.9 7.6 71 225-302 38-109 (113)
106 1ujd_A KIAA0559 protein; PDZ d 98.8 4.7E-09 1.6E-13 89.2 6.7 78 224-302 30-110 (117)
107 3cbz_A Dishevelled-2; PDZ doma 98.8 7.4E-09 2.5E-13 86.7 7.7 78 224-302 17-97 (108)
108 2d92_A INAD-like protein; PDZ 98.8 4.9E-09 1.7E-13 87.7 6.4 77 224-300 26-104 (108)
109 1v5q_A GRIP1 homolog, glutamat 98.8 7.5E-09 2.6E-13 88.6 7.7 82 221-302 24-108 (122)
110 1q3o_A Shank1; PDZ, GKAP, pept 98.8 1E-08 3.6E-13 85.7 8.4 76 224-300 19-103 (109)
111 1wha_A KIAA0147 protein, scrib 98.8 8E-09 2.7E-13 85.9 7.6 77 224-301 18-98 (105)
112 2yub_A LIMK-2, LIM domain kina 98.8 2.8E-09 9.7E-14 91.0 4.9 77 225-304 30-108 (118)
113 2kpk_A Membrane-associated gua 98.8 5.6E-09 1.9E-13 90.3 6.8 75 224-301 29-105 (129)
114 2h2b_A Tight junction protein 98.8 1.6E-08 5.5E-13 84.1 9.3 78 223-302 18-98 (107)
115 3id1_A Regulator of sigma E pr 98.8 6.9E-09 2.4E-13 85.0 6.9 70 243-314 4-76 (95)
116 1q7x_A PDZ2B domain of PTP-BAS 98.8 6.2E-09 2.1E-13 86.9 6.6 78 224-302 20-103 (108)
117 2dlu_A INAD-like protein; PDZ 98.8 7.1E-09 2.4E-13 87.0 6.9 73 224-302 26-99 (111)
118 3o46_A Maguk P55 subfamily mem 98.8 1.1E-08 3.8E-13 83.0 7.8 72 225-301 16-88 (93)
119 3i4w_A Disks large homolog 4; 98.8 1.3E-08 4.4E-13 84.2 8.3 73 224-301 22-95 (104)
120 1wfg_A Regulating synaptic mem 98.8 7.3E-09 2.5E-13 90.0 7.0 78 224-301 48-127 (131)
121 2p3w_A Probable serine proteas 98.8 9E-09 3.1E-13 86.6 7.3 69 240-312 34-102 (112)
122 1uew_A Membrane associated gua 98.8 1.2E-08 4E-13 86.2 8.1 78 224-302 22-104 (114)
123 2e7k_A Maguk P55 subfamily mem 98.8 1.1E-08 3.8E-13 83.0 7.5 69 224-300 18-87 (91)
124 2q9v_A Membrane-associated gua 98.8 8.6E-09 2.9E-13 83.0 6.8 74 224-300 13-88 (90)
125 1x6d_A Interleukin-16; PDZ dom 98.8 3.5E-09 1.2E-13 90.1 4.6 79 223-303 26-105 (119)
126 1uit_A Human discs large 5 pro 98.8 7.5E-09 2.6E-13 87.7 6.6 75 224-304 30-104 (117)
127 2ego_A General receptor for ph 98.8 1.4E-08 4.8E-13 83.0 7.9 76 224-300 16-95 (96)
128 2la8_A Inactivation-NO-after-p 98.8 1.2E-08 4.3E-13 85.2 7.7 70 224-300 14-84 (106)
129 1uf1_A KIAA1526 protein; PDZ d 98.8 5.8E-09 2E-13 89.9 5.7 82 224-310 32-113 (128)
130 1wf8_A Neurabin-I; PDZ domain, 98.8 7.3E-09 2.5E-13 86.4 6.1 77 224-301 20-100 (107)
131 1nf3_C PAR-6B; semi-CRIB motif 98.8 9E-09 3.1E-13 88.9 6.5 61 241-302 65-126 (128)
132 1qav_A Alpha-1 syntrophin (res 98.8 1.6E-08 5.5E-13 81.5 7.5 72 224-299 16-88 (90)
133 2dkr_A LIN-7 homolog B; LIN-7B 98.8 1.1E-08 3.8E-13 82.8 6.5 74 224-301 16-90 (93)
134 3egg_C Spinophilin; PP1, serin 98.7 1.9E-08 6.3E-13 91.4 8.4 76 224-300 91-170 (170)
135 2edp_A Fragment, shroom family 98.7 3.5E-09 1.2E-13 87.4 3.2 74 224-302 21-95 (100)
136 2eno_A Synaptojanin-2-binding 98.7 1.4E-08 4.7E-13 86.6 6.9 78 224-302 28-108 (120)
137 1mfg_A ERB-B2 interacting prot 98.7 3E-08 1E-12 80.7 8.6 75 225-301 14-93 (95)
138 2rcz_A Tight junction protein 98.7 2.4E-08 8.2E-13 78.3 7.8 59 242-301 22-81 (81)
139 1y8t_A Hypothetical protein RV 98.7 4.9E-08 1.7E-12 97.3 11.7 84 223-312 228-313 (324)
140 1v62_A KIAA1719 protein; struc 98.7 1.2E-08 4E-13 86.8 6.1 76 224-302 27-103 (117)
141 2daz_A INAD-like protein; PDZ 98.7 1.1E-08 3.8E-13 87.7 5.9 76 224-302 36-112 (124)
142 1uhp_A Hypothetical protein KI 98.7 2.9E-08 1E-12 82.7 8.2 77 224-301 19-101 (107)
143 3qe1_A Sorting nexin-27, G pro 98.7 3.6E-08 1.2E-12 82.0 8.6 59 243-302 45-103 (107)
144 1y7n_A Amyloid beta A4 precurs 98.7 1.5E-08 5.1E-13 82.2 5.7 56 244-300 34-89 (90)
145 1v5l_A PDZ and LIM domain 3; a 98.7 1E-08 3.4E-13 85.0 4.7 74 225-302 16-89 (103)
146 3k1r_A Harmonin; protein-prote 98.7 3.2E-08 1.1E-12 91.4 8.3 74 224-302 96-169 (192)
147 2csj_A TJP2 protein; PDZ domai 98.7 7.2E-09 2.5E-13 87.9 3.6 78 223-302 25-105 (117)
148 1n7t_A 99-MER peptide of densi 98.7 2.4E-08 8.3E-13 82.5 6.7 74 225-300 22-100 (103)
149 3kzd_A TIAM-1, T-lymphoma inva 98.7 4.9E-08 1.7E-12 79.9 8.2 70 224-298 20-89 (94)
150 1tp5_A Presynaptic density pro 98.7 4.5E-08 1.5E-12 83.1 8.2 73 224-301 25-98 (119)
151 2i4s_A General secretion pathw 98.7 5.8E-08 2E-12 80.8 8.7 66 242-309 38-104 (105)
152 2z17_A Pleckstrin homology SEC 98.7 1.4E-08 4.9E-13 84.1 4.8 93 198-297 7-103 (104)
153 4e34_A Golgi-associated PDZ an 98.7 4.3E-08 1.5E-12 78.3 7.4 71 224-298 14-85 (87)
154 2qbw_A PDZ-fibronectin fusion 98.7 1E-07 3.5E-12 87.7 10.9 84 225-310 3-94 (195)
155 2ehr_A INAD-like protein; PDZ 98.7 6E-08 2E-12 82.1 8.6 77 224-301 27-110 (117)
156 1te0_A Protease DEGS; two doma 98.7 5E-08 1.7E-12 97.1 9.4 71 240-312 243-314 (318)
157 2edv_A FERM and PDZ domain-con 98.7 1.1E-08 3.7E-13 83.8 3.6 68 225-301 22-89 (96)
158 3soe_A Membrane-associated gua 98.7 9.9E-08 3.4E-12 80.7 9.6 71 224-302 23-94 (113)
159 3nfk_A Tyrosine-protein phosph 98.7 6.1E-08 2.1E-12 80.6 8.2 74 224-300 29-107 (107)
160 2eei_A PDZ domain-containing p 98.6 1.2E-08 4E-13 84.9 3.6 74 224-302 19-92 (106)
161 3stj_A Protease DEGQ; serine p 98.6 4.8E-08 1.7E-12 98.4 8.7 71 240-312 262-333 (345)
162 3hpk_A Protein interacting wit 98.6 6.6E-08 2.2E-12 82.9 8.3 73 223-299 30-103 (125)
163 3e17_A Tight junction protein 98.6 3.4E-08 1.2E-12 79.5 5.9 59 241-300 21-80 (88)
164 2cs5_A Tyrosine-protein phosph 98.6 3.7E-08 1.3E-12 83.7 6.1 76 224-302 27-107 (119)
165 2dc2_A GOPC, golgi associated 98.6 5.1E-08 1.7E-12 80.8 6.7 74 224-301 21-95 (103)
166 1p1d_A PDZ45, glutamate recept 98.6 8.5E-08 2.9E-12 88.5 8.8 81 222-302 16-99 (196)
167 3gsl_A Disks large homolog 4; 98.6 2.1E-07 7.2E-12 85.1 11.1 77 224-301 16-95 (196)
168 1vae_A Rhophilin 2, rhophilin, 98.6 2E-08 6.7E-13 84.8 3.6 69 224-299 26-94 (111)
169 1x5n_A Harmonin; PDZ domain, u 98.6 9.8E-08 3.3E-12 80.3 7.9 74 224-302 27-101 (114)
170 1uju_A Scribble; PDZ domain, c 98.6 3.1E-08 1.1E-12 83.1 4.8 78 223-301 20-104 (111)
171 2gzv_A PRKCA-binding protein; 98.6 8.9E-08 3.1E-12 81.0 7.6 72 224-299 36-108 (114)
172 2qt5_A Glutamate receptor-inte 98.6 1.8E-07 6.3E-12 86.4 9.9 74 224-301 19-93 (200)
173 2hga_A Conserved protein MTH13 98.6 1.6E-07 5.5E-12 80.8 8.5 64 240-308 24-88 (125)
174 1ufx_A KIAA1526 protein; PDZ d 98.6 4.3E-08 1.5E-12 81.4 4.5 76 224-301 17-97 (103)
175 2krg_A Na(+)/H(+) exchange reg 98.6 3.6E-09 1.2E-13 99.8 -2.5 88 223-315 19-109 (216)
176 3qo6_A Protease DO-like 1, chl 98.5 1.2E-07 4.1E-12 95.5 8.1 71 241-313 251-333 (348)
177 3tsz_A Tight junction protein 98.5 8.9E-08 3E-12 98.1 7.2 72 225-301 20-92 (391)
178 3gge_A PDZ domain-containing p 98.5 2.4E-07 8.2E-12 75.7 8.2 72 224-300 16-89 (95)
179 2lob_A Golgi-associated PDZ an 97.9 1.1E-08 3.7E-13 86.5 0.0 70 224-297 39-109 (112)
180 1lcy_A HTRA2 serine protease; 98.5 2.3E-07 7.9E-12 92.6 8.9 68 240-311 255-322 (325)
181 1um7_A Synapse-associated prot 98.5 6.6E-08 2.3E-12 81.1 4.0 73 224-301 26-99 (113)
182 3pv2_A DEGQ; trypsin fold, PDZ 98.5 4.1E-07 1.4E-11 94.9 10.8 71 241-313 282-353 (451)
183 2d8i_A T-cell lymphoma invasio 98.5 1.5E-07 5E-12 79.8 5.8 58 241-301 44-101 (114)
184 3rle_A Golgi reassembly-stacki 98.5 2.1E-07 7.3E-12 87.0 7.0 69 240-309 15-86 (209)
185 3r0h_A INAD, inactivation-NO-a 98.4 3.3E-07 1.1E-11 84.9 8.0 70 224-300 125-195 (206)
186 3gsl_A Disks large homolog 4; 98.4 4.5E-07 1.5E-11 82.8 8.2 79 225-304 112-193 (196)
187 2qt5_A Glutamate receptor-inte 98.4 4.8E-07 1.6E-11 83.6 8.0 63 241-304 135-198 (200)
188 1z87_A Alpha-1-syntrophin; pro 98.4 2.3E-07 7.7E-12 89.9 5.6 76 223-302 88-164 (263)
189 4a8c_A Periplasmic PH-dependen 98.4 8E-07 2.7E-11 92.2 9.9 71 241-313 263-334 (436)
190 3shw_A Tight junction protein 98.4 3.7E-07 1.3E-11 95.2 7.0 73 224-301 11-84 (468)
191 3rle_A Golgi reassembly-stacki 98.4 4.3E-07 1.5E-11 84.9 6.7 67 241-310 112-181 (209)
192 2xkx_A Disks large homolog 4; 98.4 7.9E-07 2.7E-11 97.9 9.4 86 224-310 70-162 (721)
193 3num_A Serine protease HTRA1; 98.3 1.2E-07 4E-12 94.9 0.0 68 241-312 254-321 (332)
194 1p1d_A PDZ45, glutamate recept 98.2 1.4E-06 4.8E-11 80.2 6.3 75 225-301 120-195 (196)
195 4a8c_A Periplasmic PH-dependen 98.2 3E-06 1E-10 87.9 9.3 67 241-310 363-429 (436)
196 3pv2_A DEGQ; trypsin fold, PDZ 98.2 2.3E-06 7.8E-11 89.2 8.0 65 241-308 386-450 (451)
197 1ky9_A Protease DO, DEGP, HTRA 98.1 7.9E-07 2.7E-11 92.6 2.7 68 241-310 286-354 (448)
198 4fln_A Protease DO-like 2, chl 98.0 1.2E-05 4.1E-10 85.2 10.0 72 240-312 276-356 (539)
199 2xkx_A Disks large homolog 4; 97.8 4.6E-05 1.6E-09 83.9 9.0 73 224-301 318-391 (721)
200 1ky9_A Protease DO, DEGP, HTRA 97.7 4.1E-06 1.4E-10 87.2 0.0 65 241-308 383-447 (448)
201 1w9e_A Syntenin 1; cell adhesi 97.3 0.00029 1E-08 62.8 6.3 53 244-297 110-162 (166)
202 3suz_A Amyloid beta A4 precurs 97.3 4.2E-05 1.4E-09 78.1 0.0 56 244-300 318-373 (388)
203 4fln_A Protease DO-like 2, chl 95.7 0.015 5.2E-07 61.5 7.3 68 240-312 414-481 (539)
204 3viv_A 441AA long hypothetical 91.9 0.51 1.7E-05 44.3 8.5 83 332-441 7-93 (230)
205 1yg6_A ATP-dependent CLP prote 86.7 1 3.6E-05 40.8 6.2 81 333-441 26-107 (193)
206 1y7o_A ATP-dependent CLP prote 86.4 0.87 3E-05 42.2 5.6 82 333-442 45-127 (218)
207 2cby_A ATP-dependent CLP prote 83.8 1 3.4E-05 41.4 4.6 71 344-441 37-108 (208)
208 2f6i_A ATP-dependent CLP prote 80.9 1.4 4.7E-05 40.8 4.4 81 334-442 40-120 (215)
209 3p2l_A ATP-dependent CLP prote 77.5 3.6 0.00012 37.5 6.1 80 333-440 30-110 (201)
210 3qwd_A ATP-dependent CLP prote 76.3 2.5 8.4E-05 38.7 4.5 80 334-441 28-108 (203)
211 1tg6_A Putative ATP-dependent 69.6 9.1 0.00031 36.7 6.9 80 334-441 83-163 (277)
212 3rst_A Signal peptide peptidas 52.6 13 0.00044 34.6 4.5 68 348-439 31-100 (240)
213 1j7x_A IRBP, interphotorecepto 44.9 47 0.0016 31.7 7.3 59 145-207 5-66 (302)
214 3bl4_A Uncharacterized protein 43.0 27 0.00092 29.2 4.5 49 331-380 17-68 (124)
215 3bf0_A Protease 4; bacterial, 36.2 13 0.00046 39.4 2.0 83 333-439 301-392 (593)
216 3swx_A Probable enoyl-COA hydr 35.3 1.4E+02 0.0048 27.7 8.8 96 333-439 17-123 (265)
217 2j3t_D Trafficking protein par 35.2 59 0.002 29.9 5.9 53 240-298 44-99 (219)
218 2kln_A Probable sulphate-trans 34.7 50 0.0017 26.9 5.0 66 333-398 14-86 (130)
219 3pe8_A Enoyl-COA hydratase; em 32.3 99 0.0034 28.7 7.2 88 333-440 17-114 (256)
220 4f47_A Enoyl-COA hydratase ECH 31.5 72 0.0025 29.9 6.1 102 333-439 28-136 (278)
221 4gm2_A ATP-dependent CLP prote 28.8 51 0.0017 30.0 4.3 80 333-440 28-118 (205)
222 1th8_B Anti-sigma F factor ant 27.6 64 0.0022 25.2 4.3 46 334-379 12-59 (116)
223 3lao_A Enoyl-COA hydratase/iso 26.1 2.4E+02 0.0082 25.9 8.7 96 333-439 20-126 (258)
224 2ka5_A Putative anti-sigma fac 24.4 1.7E+02 0.0058 23.4 6.5 48 333-380 20-69 (125)
225 3qre_A Enoyl-COA hydratase, EC 23.9 1.2E+02 0.004 28.9 6.1 103 334-439 39-151 (298)
226 3t6o_A Sulfate transporter/ant 23.4 75 0.0026 25.4 4.1 47 333-379 13-64 (121)
227 4dgh_A Sulfate permease family 20.9 2.4E+02 0.0082 22.6 6.8 64 333-397 19-86 (130)
228 1sbo_A Putative anti-sigma fac 20.1 2.5E+02 0.0085 21.2 6.5 49 333-381 12-62 (110)
No 1
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Probab=100.00 E-value=1.4e-52 Score=431.93 Aligned_cols=312 Identities=52% Similarity=0.938 Sum_probs=273.2
Q ss_pred chhhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCC
Q 012727 142 SEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQG 221 (457)
Q Consensus 142 ~~~~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~ 221 (457)
++.++.|+++|+.++++|+++.+++++|+++++.+.+....++.++++.++.+|+++|+|||+.|+++++++.+.....+
T Consensus 3 ~~~~~~f~~~w~~i~~~y~~~~~~~~dW~~~~~~y~~~~~~~~~~~~~~~i~~ml~~L~D~hs~~~~~~~~~~~~~~~~g 82 (388)
T 1fc6_A 3 TSEQLLFLEAWRAVDRAYVDKSFNGQSWFKLRETYLKKEPMDRRAQTYDAIRKMLAVLDDPFTRFLEPSRLAALRRGTAG 82 (388)
T ss_dssp CHHHHHHHHHHHHHHHHCSCTTGGGCCHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCCTTCEEECHHHHHHHHHCSSS
T ss_pred ccHHHHHHHHHHHHHHHHhcccccCccHHHHHHHhhhccCCCCHHHHHHHHHHHHHhcCCCcceecCHHHHHHHHHhhcC
Confidence 56788999999999999999999999999999999874456788999999999999999999999999999888777778
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.+.|+|+.+.... ..+++++|..|.++|||++|||++||+|++|||+++.++..+++...+++.+|++++|++.|++
T Consensus 83 ~~~giG~~~~~~~---~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g 159 (388)
T 1fc6_A 83 SVTGVGLEITYDG---GSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG 159 (388)
T ss_dssp SCBBCSEEEEECT---TCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred ceEEEEEEEEEee---cCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 8999999987531 1136899999999999999999999999999999999987788888898889999999999998
Q ss_pred e---EEEEEEEeeccccCccccccccc-----CCCCCCCCcEEEEEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCC
Q 012727 302 E---IRHLALTREKVSLNPVKSRLCVV-----PGPGKSSPRIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDN 373 (457)
Q Consensus 302 ~---~~~vtl~r~~~~~~~v~~~~~~~-----~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N 373 (457)
+ .+++++++..+..+++..+.++. ......+++||||+|++|...+.+++.+++.+++++++++||||||+|
T Consensus 160 ~~~~~~~~~l~r~~i~~~~v~~~~~~~~~~~~~~~~~~~~~igYi~i~~F~~~~~~~~~~~l~~l~~~~~~~lIlDLR~N 239 (388)
T 1fc6_A 160 APSNTRTLQLTRQKVTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLATFNSNTTAAAQQAFTELSKQGVAGLVLDIRNN 239 (388)
T ss_dssp EEEEEEEEEEECBCCCCCCEEEEEECSCCGGGSCTTCSSSCEEEEEECCBSTTHHHHHHHHHHHHHHTTCSEEEEECTTC
T ss_pred CCcceEEEEEEEceeecCceeeeeeccccccccccccCCCCEEEEEeCccCcchHHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence 7 88999999988888876554310 001234579999999999998899999999999888999999999999
Q ss_pred CCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCC
Q 012727 374 SGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPT 453 (457)
Q Consensus 374 ~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T 453 (457)
+||.+..+..++++|++++.+++.+.+.+....+...+. ...+++|++||||++|+||||+|+++||+++++++||++|
T Consensus 240 ~GG~~~~~~~~~~~f~~~~~i~~~~~r~~~~~~~~~~~~-~~~~~~pv~VLvn~~taSasEi~a~al~~~~~~~~vG~~T 318 (388)
T 1fc6_A 240 GGGLFPAGVNVARMLVDRGDLVLIADSQGIRDIYSADGN-SIDSATPLVVLVNRGTASASEVLAGALKDSKRGLIAGERT 318 (388)
T ss_dssp CCBCHHHHHHHHHHHCSSSEEEEEEETTEEEEEEECCSC-CSCSSSCEEEEECTTCCTHHHHHHHHHHHTTSEEEEESCC
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEEecCCCceeEEecCCc-cccCCCCEEEEeCCCCccHHHHHHHHHhhCCCEEEEeecC
Confidence 999999999999999999998888887776666654332 2248999999999999999999999999999999999999
Q ss_pred CCCC
Q 012727 454 YGKG 457 (457)
Q Consensus 454 ~GkG 457 (457)
+|||
T Consensus 319 ~Gkg 322 (388)
T 1fc6_A 319 FGKG 322 (388)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9997
No 2
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=4.4e-40 Score=375.85 Aligned_cols=286 Identities=18% Similarity=0.200 Sum_probs=234.8
Q ss_pred ccchhhHHHHHHHHHHHHHcCCCCCCCCCh-HHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhc
Q 012727 140 ALSEENRLFLEAWRTIDRAYVDKTFNGQSW-FRYRENALRN-EPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRS 217 (457)
Q Consensus 140 ~~~~~~~~fd~v~r~l~~~Y~d~~~~g~dw-~~~~~~~~~~-~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~ 217 (457)
+..+..+.|+++|+.++++|+++. ++++| +++++.|.+. ....+.++|+.++.+|+++|+|||+.+. +.++..
T Consensus 656 ~~~~~~~~~~~~~~~~~~~y~~~~-~~~d~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~l~d~ht~~~-~~~~~~--- 730 (1045)
T 1k32_A 656 IHEEFLQMYDEAWKLARDNYWNEA-VAKEISERIYEKYRNLVPLCKTRYDLSNVIVEMQGEYRTSHSYEM-GGTFTD--- 730 (1045)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCHH-HHHHHHHHHHHHHHTTGGGCCSHHHHHHHHHHHHHTTCCSCCCEE-CCCCCS---
T ss_pred hhHHHHHHHHHHHHHHHHhhcCCC-CCCChHHHHHHHHHHhhcccCCHHHHHHHHHHHHHhcCCCcceEC-hhHhcc---
Confidence 346788999999999999999988 89999 9999999865 3567789999999999999999999664 444433
Q ss_pred ccCCceeeeeEEEeecCCCCCCCCceEEEEecCC--------CcccccC--CCCCCEEEEECCEecCCCCHHHHHHHhcC
Q 012727 218 GTQGALTGVGLSIGYPTASDGSSAGLVVISSMPG--------GPANRAG--ILSGDVILAIDDTSTESMGIYDAAERLQG 287 (457)
Q Consensus 218 ~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~g--------SpA~~AG--L~~GD~IlaIdG~~v~~~~~~~~~~~l~~ 287 (457)
...+.+.|+|+.+... +++++|..|++| |||+++| |+ ||+|++|||+++.++. ++..++++
T Consensus 731 ~~~~~~~g~G~~~~~~------~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~ 801 (1045)
T 1k32_A 731 KDPFRSGRIACDFKLD------GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSE 801 (1045)
T ss_dssp CCCCCCCBCSEEEEEE------TTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHT
T ss_pred ccccccceecEEEEEe------CCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcC
Confidence 2356678999998776 578999999998 9999999 99 9999999999999873 67788899
Q ss_pred CCCCcEEEEEEeCC-eEEEEEEEeeccccCcccc---------cccccCCCCCCCCcEEEEEEeccCcchHHHHHHHHHH
Q 012727 288 PEGSPVELTVRSGA-EIRHLALTREKVSLNPVKS---------RLCVVPGPGKSSPRIGYIKLTSFNQNASGAVREAIDT 357 (457)
Q Consensus 288 ~~G~~v~L~v~r~g-~~~~vtl~r~~~~~~~v~~---------~~~~~~~~~~~~~~igYi~i~sF~~~~~~~l~~~l~~ 357 (457)
+.|++|+|+|.|++ +.++++|++.. ...++.. ...+ ..+++||||+|++|...+.+++.+++.+
T Consensus 802 ~~g~~v~l~v~r~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~igyi~~~~f~~~~~~~~~~~~~~ 875 (1045)
T 1k32_A 802 KAGTSARIRLSGKGGDKRDLMIDILD-DDRFIRYRSWVEANRRYVHE-----RSKGTIGYIHIPDMGMMGLNEFYRLFIN 875 (1045)
T ss_dssp TTTSEEEEEEECSSSCEEEEEEECBS-CCHHHHHHHHHHHHHHHHHH-----HTTTSEEEEECCCBSHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCceEEEEEEEcc-cccchhhhhhhhhcceeEEE-----ecCCCEEEEEECccCchHHHHHHHHHHH
Confidence 99999999999876 56788887532 1112211 0111 2346899999999998888888888876
Q ss_pred HhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHH
Q 012727 358 LRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLAVLVNKGTASASEILA 437 (457)
Q Consensus 358 l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a 437 (457)
+ +++++||||||+|+||.+..+ ++++| .++.+++.+.+.+....+.. ..+++|++||||++|+||||+|+
T Consensus 876 ~--~~~~~liiDlR~N~GG~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vL~~~~taSa~e~~~ 945 (1045)
T 1k32_A 876 E--SSYQGLIVDVRFNGGGFVSQL--IIEKL-MNKRIGYDNPRRGTLSPYPT-----NSVRGKIIAITNEYAGSDGDIFS 945 (1045)
T ss_dssp H--TTSSEEEEECTTCCCBSCHHH--HHHHH-TCBCCEEEEESSSCCEEEST-----TCBCSEEEEEECTTCCTHHHHHH
T ss_pred h--CCCCEEEEEcCcCCCCCHHHH--HHhhc-cCCcEEEEecCCCceeeccc-----cCCCCCEEEEECCCCccHHHHHH
Confidence 5 579999999999999999875 46765 66777888887776655532 24789999999999999999999
Q ss_pred HHHhcCCCeEEEccCCCC
Q 012727 438 GALKDNKRAVLFGEPTYG 455 (457)
Q Consensus 438 ~~lk~~~~a~vVG~~T~G 455 (457)
++||+++++++||++|+|
T Consensus 946 ~~l~~~~~~~~vG~~t~G 963 (1045)
T 1k32_A 946 FSFKKLGLGKLIGTRTWG 963 (1045)
T ss_dssp HHHHHTTSEEEEESCCCC
T ss_pred HHHhhcCCEEEEccCCCC
Confidence 999999999999999999
No 3
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}
Probab=100.00 E-value=9.4e-37 Score=314.23 Aligned_cols=223 Identities=21% Similarity=0.303 Sum_probs=169.6
Q ss_pred eeeeeEEEeecCCCCCCCC--ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 223 LTGVGLSIGYPTASDGSSA--GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~--~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
..|+|+.+..... .+. .++|..|.++|||++|||++||+|++|||+++..+. +...+++ +|++++|++.|+
T Consensus 73 ~~G~~~~l~~~~~---~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~-~g~~v~l~v~R~ 145 (403)
T 3k50_A 73 SYGFDYTLYKVLD---NDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQG-STRQLQIGVYKE 145 (403)
T ss_dssp BCSEEEEEEECTT---CSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSC-SCEEEEEEEEEE
T ss_pred ccceEEEEEEcCC---CCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhC-CCCEEEEEEEeC
Confidence 5677777654311 011 377999999999999999999999999999999874 4456677 899999999887
Q ss_pred CeEE------------EEEEEe-eccccCcc-cccccccCCCCCCCCcEEEEEEeccCcc-------hHHHHHHHHHHHh
Q 012727 301 AEIR------------HLALTR-EKVSLNPV-KSRLCVVPGPGKSSPRIGYIKLTSFNQN-------ASGAVREAIDTLR 359 (457)
Q Consensus 301 g~~~------------~vtl~r-~~~~~~~v-~~~~~~~~~~~~~~~~igYi~i~sF~~~-------~~~~l~~~l~~l~ 359 (457)
++.. +++++. ..+...|+ ..++++ ..+++||||+|++|..+ +.++++++|++|+
T Consensus 146 g~~~~~~~~~~~i~~~~~~l~~~r~~~~~pv~~~~v~~-----~~~~~iGYI~i~~F~~~t~~~~~~~~~~l~~al~~l~ 220 (403)
T 3k50_A 146 VVGEDGEVTGGVVPIGETTMPASRSLVDKPVHRFEIIP-----WNGKKVGYLMYNEFKAGPTTDSQAYNDDLRRAFRDFQ 220 (403)
T ss_dssp EC-----CEEEEEEEEEEEECCCBCCCCCSEEEEEEEE-----ETTEEEEEEEECCBCCCSSTTCCHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccceEEEeeeeeeeccceeeeeee-----eCCCcEEEEEEccccCcccccchhhHHHHHHHHHHHH
Confidence 6432 333431 22223343 334443 23468999999999874 3579999999999
Q ss_pred hCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCc----EEEEE--cCCCce-eeEeCCC----CCCCCCCCcEEEEEcCC
Q 012727 360 SNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGV----IVYIC--DSRGVR-DIYDTDG----TDALAASEPLAVLVNKG 428 (457)
Q Consensus 360 ~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~----~~~~~--~~~~~~-~~~~~~~----~~~~~~~gpvvVLvn~~ 428 (457)
++++++||||||+|+||.+..|..++++|++++. +++.+ ++.+.. ..+.... .......+|++||||+.
T Consensus 221 ~~~~~~lIlDLR~N~GG~l~~a~~la~~f~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vL~~~~ 300 (403)
T 3k50_A 221 TGGVNEFVLDLRYNTGGSLDCAQLLCTMLAPADKMNQLLALLRYSDKRVEANQDLTFNPELIQSGANLNLSTVYVLTTNA 300 (403)
T ss_dssp HTTCCEEEEECTTCCCBCHHHHHHHHHHHSCGGGTTSEEEEEECCTTCGGGCEEEECCGGGTTTSCCCCCSEEEEEECTT
T ss_pred HCCCcEEEEEcCCCCCCCHHHHHHHHHHhcCCCccceeEEEEEEcCCCCcceeEEeccccccccccccCCCCEEEEECCC
Confidence 9999999999999999999999999999999886 45555 343332 2233221 11223468999999999
Q ss_pred CcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 429 TASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 429 TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
|+||||+|+++||+++++++||++|+|||
T Consensus 301 taSa~E~~~~~l~~~~~~~~iG~~T~G~~ 329 (403)
T 3k50_A 301 TRGAAEMVINCLNPYMKVVLIGTKTAGEY 329 (403)
T ss_dssp CCTHHHHHHHHHTTTSEEEEEESCCCCCC
T ss_pred CccHHHHHHHHHhhCCCEEEEeecCCCCC
Confidence 99999999999999999999999999997
No 4
>3dor_A Protein CT_858, CPAF; mature CPAF, dimer, transferase; 2.20A {Chlamydia trachomatis} PDB: 3dpm_A* 3dpn_A 3dja_A
Probab=99.92 E-value=1.4e-23 Score=220.99 Aligned_cols=293 Identities=17% Similarity=0.232 Sum_probs=186.0
Q ss_pred hhHHHHHHHHHHHHHcCCCC----CCCCChHH-HHHHhhc--cCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhh
Q 012727 144 ENRLFLEAWRTIDRAYVDKT----FNGQSWFR-YRENALR--NEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLR 216 (457)
Q Consensus 144 ~~~~fd~v~r~l~~~Y~d~~----~~g~dw~~-~~~~~~~--~~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~ 216 (457)
.-+.|+-+-..+..+|.-.+ ..++|-.+ +.+...+ .....+..+|+..+..+++.++|.|+.+..+..
T Consensus 7 ~~~d~~~l~~l~~~kYap~~wK~~~~g~Dl~~~l~~ir~kl~~e~~~Te~dFq~~L~~~fasl~DGHt~l~~~s~----- 81 (583)
T 3dor_A 7 ALQDLSFLEHLLQVKYAPKTWKEQYLGWDLVQSSVSAQQKLRTQENPSTSFCQQVLADFIGGLNDFHAGVTFFAI----- 81 (583)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHSCCCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCCSSCEEEESCC-----
T ss_pred HHHHHHHHHHHHhcccCCchhhhccCCcCchhHHHHHHHHHHccCCCCHHHHHHHHHHHHhhcCCCceeEeeccc-----
Confidence 34568888888888885432 23444332 2221112 234567899999999999999999999864411
Q ss_pred cccCCceeeeeEEEe-ecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCC--------------HHHH
Q 012727 217 SGTQGALTGVGLSIG-YPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG--------------IYDA 281 (457)
Q Consensus 217 ~~~~~~~~glGi~~~-~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~--------------~~~~ 281 (457)
.+..+|+.+. .. ++.++|+++... .++++.||+|++|||+++.++- ...+
T Consensus 82 -----~~a~~Pf~vki~i------DG~i~V~dv~~~----~s~I~vGdEIlsING~pv~e~Lek~~~~~Gsn~~a~~~~A 146 (583)
T 3dor_A 82 -----ESAYLPYTVQKSS------DGRFYFVDIMTF----SSEIRVGDELLEVDGAPVQDVLATLYGSNHKGTAAEESAA 146 (583)
T ss_dssp -----CEEECSEEEEECT------TSCEEEEEECSS----CCSSCTTCEEEEETTEEHHHHHHTTSCTTCCCCHHHHHHH
T ss_pred -----ccccCCeEEEEEE------CCcEEEEecccc----ccCCCCCCEEEEECCccHHHHHHHHHHhcCCCcHHHHHHH
Confidence 1233556655 33 567788766322 2279999999999999997641 1111
Q ss_pred HHHhc------C--CCCCcEEEEEEe-CCeEEEEEEEeeccc-----c---Cc------c----------cc--------
Q 012727 282 AERLQ------G--PEGSPVELTVRS-GAEIRHLALTREKVS-----L---NP------V----------KS-------- 320 (457)
Q Consensus 282 ~~~l~------~--~~G~~v~L~v~r-~g~~~~vtl~r~~~~-----~---~~------v----------~~-------- 320 (457)
.+.|. + .+.+.++|++.+ +|..+++++.-...+ . .| + .+
T Consensus 147 l~~Lt~R~~~l~~~~p~~~~tlk~~~~~G~~~~v~~pW~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (583)
T 3dor_A 147 LRTLFSRMASLGHKVPSGRTTLKIRRPFGTTREVRVKWRYVPEGVGDLATIAPSIRAPQLQKSMRSFFPKKDDAFHRSSS 226 (583)
T ss_dssp HHHHTEEEGGGTCCCCCSEEEEEEECTTSCEEEEEEECEEECCCSCCHHHHGGGCCCCCC--------------------
T ss_pred HHHHhhhHHhhccCCCCCceEEEEECCCCcEEEEEeeeEEcccccccccccCcchhhccccccchhhccccccccccCcc
Confidence 22221 1 233478888855 577777765421100 0 00 0 00
Q ss_pred --------------------cccc-----------cCC-------------------CCCCC--CcEEEEEEeccCcch-
Q 012727 321 --------------------RLCV-----------VPG-------------------PGKSS--PRIGYIKLTSFNQNA- 347 (457)
Q Consensus 321 --------------------~~~~-----------~~~-------------------~~~~~--~~igYi~i~sF~~~~- 347 (457)
+.++ ++. .+..+ .+||||||++|....
T Consensus 227 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g~~~~f~~~~g~~~w~~~~~~~a~i~~~~~~~~~~~~ig~~ri~~~~~~~~ 306 (583)
T 3dor_A 227 LFYSPMVPHFWAELRNHYATSGLKSGYNIGSTDGFLPVIGPVIWESEGLFRAYISSVTDGDGKSHKVGFLRIPTYSWQDM 306 (583)
T ss_dssp -------------------------CCSTTCSSCSCCCSSCCSEECCSSSEEEEEEEECSSSCEEEEEEEECCCBCGGGS
T ss_pred ccccccChHHHHHHHhhhhccccccccCccccccccCCCCCcccccCCceeeEEEeccccCCCcceeeEEEccccCCccc
Confidence 0000 000 01123 389999999997432
Q ss_pred ----------HHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEE-------------------
Q 012727 348 ----------SGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYIC------------------- 398 (457)
Q Consensus 348 ----------~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~------------------- 398 (457)
-.++.+.++.+. .++++||||+|+||||+......+++++.+++.-+...
T Consensus 307 ~~~~~~~~~~~~~f~~~~~~~~-~~~~~liid~~~n~gg~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~a~~~~~~~ 385 (583)
T 3dor_A 307 EDFDPSGPPPWEEFAKIIQVFS-SNTEALIIDQTNNPGGSVLYLYALLSMLTDRPLELPKHRMILTQDEVVDALDWLTLL 385 (583)
T ss_dssp TTCCTTSCCHHHHHHHHHHHHH-HHCSEEEEECCSBCCBCHHHHHHHHHTTCSSCEECCEEEECCCHHHHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHHHHHHhh-cCCCeEEEEecCCCCccHHHHHHHHHHHhcCCCCCcceeeEEecHHHHHHHHHHHHH
Confidence 246666666654 47999999999999999999889999998875421100
Q ss_pred -----c-----------------------------------CCCc---eee---E---eCCCCCCCCCCCcEEEEEcCCC
Q 012727 399 -----D-----------------------------------SRGV---RDI---Y---DTDGTDALAASEPLAVLVNKGT 429 (457)
Q Consensus 399 -----~-----------------------------------~~~~---~~~---~---~~~~~~~~~~~gpvvVLvn~~T 429 (457)
. ..|. ... . ...+.+...|++|+|||||+.|
T Consensus 386 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~l~~~~~G~~t~s~p~pl~g~~~i~p~~~~~~~gPvvVLVN~~S 465 (583)
T 3dor_A 386 ENVDTNVESRLALGDNMEGYTVDLQVAEYLKSFGRQVLNCWSKGDIELSTPIPLFGFEKIHPHPRVQYSKPICVLINEQD 465 (583)
T ss_dssp TTCCSHHHHHHHHCSEETTEECCHHHHHHHHHHHHHHHHHHHTTCCSSCSCBCGGGCCEECCCSSCCCCSCEEEEECTTB
T ss_pred HhhhhhhhhhhhccccccccCccHHHHHHHHHHHHHHHHHHhCCCceecCCcccccceeeccCCCccCCCCEEEEECCCC
Confidence 0 0000 000 0 0012233578999999999999
Q ss_pred cchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 430 ASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 430 aSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
+||||+|+++||++++|++||++|+|||
T Consensus 466 ASASEifA~aLKd~~ra~lVGe~T~Gkg 493 (583)
T 3dor_A 466 FSCADFFPVVLKDNDRALIVGTRTAGAG 493 (583)
T ss_dssp CTHHHHHHHHHHHTTCEEEEESCCCCCC
T ss_pred ccHHHHHHHHHHhCCCEEEEeeCCCCCC
Confidence 9999999999999999999999999997
No 5
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=99.89 E-value=4.8e-23 Score=204.92 Aligned_cols=125 Identities=22% Similarity=0.269 Sum_probs=99.8
Q ss_pred CcEEEEEEeccCcc-hHHHHHHHHHHHh---hCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCc---EEEEEcCCCce-
Q 012727 333 PRIGYIKLTSFNQN-ASGAVREAIDTLR---SNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGV---IVYICDSRGVR- 404 (457)
Q Consensus 333 ~~igYi~i~sF~~~-~~~~l~~~l~~l~---~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~---~~~~~~~~~~~- 404 (457)
++||||+|++|... ..+++.+++.++. -+++++||||||+|+||++..+..++++|++++. +++..++.+..
T Consensus 106 ~~igYi~i~~F~~~~~~~~~~~~l~~~~~~~~~~~~~LIiDLR~N~GG~~~~~~~l~~~f~~~~~~~~i~~~~~r~~~~~ 185 (302)
T 1j7x_A 106 GNIGYLRFDQFADVSVIAKLAPFIVNTVWEPITITENLIIDLRYNVGGSSTAVPLLLSYFLDPETKIHLFTLHNRQQNST 185 (302)
T ss_dssp TTEEEEECCCBCCHHHHHHHHHHHHHHTHHHHTTCSEEEEECTTCCCBCSTTHHHHHHTTSCSSCCCEEEEEEETTTTCC
T ss_pred CCEEEEEEcccCChhhHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCChhHHHHHHHHhcCCCcceeeEEEEccCCCCc
Confidence 58999999999876 3567777764321 1589999999999999999999999999999864 45566665542
Q ss_pred eeEeCCCC---CCCCCCCcEEEEEcCCCcchHHHHHHHHhcCCCeEEEccCCCCCC
Q 012727 405 DIYDTDGT---DALAASEPLAVLVNKGTASASEILAGALKDNKRAVLFGEPTYGKG 457 (457)
Q Consensus 405 ~~~~~~~~---~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~~~~a~vVG~~T~GkG 457 (457)
..+.+.+. ....+++|+|||||++|+||||+|+++||+++++++||++|+|||
T Consensus 186 ~~~~~~~~~~~~~~~~~~pvvVLvn~~TaSAsE~~a~alq~~~~a~vVG~~T~Gk~ 241 (302)
T 1j7x_A 186 DEVYSHPKVLGKPYGSKKGVYVLTSHQTATAAEEFAYLMQSLSRATIIGEITSGNL 241 (302)
T ss_dssp EEEECCSCCSSCCCCSSSEEEEEECTTCCTHHHHHHHHHHHTTCCEEEESCCCCCC
T ss_pred eeecccccccCCccCCCCCEEEEeCCCcCcHHHHHHHHHHhCCCEEEEcccCCCCC
Confidence 22332221 122368999999999999999999999999999999999999997
No 6
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Probab=99.72 E-value=1.4e-17 Score=179.54 Aligned_cols=181 Identities=17% Similarity=0.115 Sum_probs=139.7
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccccCCccccchhhHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhhccCCCCCHHHHHH
Q 012727 111 CVSVLFVQLVFTAMLVTSTTIALSETPSLALSEENRLFLEAWRTIDRAYVDKTFNGQSWFRYRENALRNEPMNTREETYM 190 (457)
Q Consensus 111 ~iSyy~kG~l~~~lL~l~i~~~~~~~~~~~~~~~~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~~~~~~~~~~ef~~ 190 (457)
-+|||.||++++++||+.|+.. +.+++.|+++|+.++++|.. +..+++++++.+.++++.+.+. ..|++
T Consensus 373 ~~s~Y~KGalv~~~LD~~lR~~---------s~g~~sldd~mr~l~~~~~~-~~~~~t~~d~~~~~e~~sG~dl-~~ff~ 441 (597)
T 4fgm_A 373 IVSYYAKGALIALSLDLMLRLQ---------SDHKLTLARVMKELWHEFGK-TSIGTADDTVINWLNQYPGIDI-SDFLK 441 (597)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHH---------TTTSCCHHHHHHHHHHHHTT-TTCCBCTTHHHHHHHTSTTCCC-HHHHH
T ss_pred ccccchHHHHHHHHHHHHHHhh---------cCCchHHHHHHHHHHHHhCc-CCCCCCHHHHHHHHHHhcCcCH-HHHHH
Confidence 3689999999999999999976 66778899999999999854 2368999999999999988876 45554
Q ss_pred HHHHHHHhcCCCCccccChhhhhhhhcc------------cCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC
Q 012727 191 AIRKMLATLDDPFTRFLEPEKFNSLRSG------------TQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG 258 (457)
Q Consensus 191 ai~~~l~~L~DpHt~~l~~~~~~~~~~~------------~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG 258 (457)
....-...+ |+..++...+++..... ......++|+.+... +++++|..|.++|||++||
T Consensus 442 ~~l~~t~~~--p~~~~l~~~G~~l~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~------~~gv~V~~V~~~spA~~AG 513 (597)
T 4fgm_A 442 DALYNKESL--SLVELLQNFGVMVQKQVPVDDNSVGGKASEQPARVNFGAKYKAS------PQGLDVLNVYHDESAYHAG 513 (597)
T ss_dssp HHHHSCSCC--CCHHHHHTTTEEEEEECCSSTTCCCSCCCSCCCSCCCSEEEEEE------TTEEEEEEECTTSHHHHHT
T ss_pred HHHhCCCCc--chhHHHhhcceEEEeccCCccccccccccccCCccccceEEecc------CCeEEEEEeCCCChHHHCC
Confidence 433335555 67666666665432211 112235788887654 4689999999999999999
Q ss_pred CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeecc
Q 012727 259 ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREKV 313 (457)
Q Consensus 259 L~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~~ 313 (457)
|++||+|++|||++|.. .++...+.. ++|++|+|+|.|+|+.++++++....
T Consensus 514 L~~GD~I~aInG~~v~~---~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 566 (597)
T 4fgm_A 514 LSAGDKIIAIDHLQATE---QSVKRILERYIPGDTVTIHAFRRDELMTLELTWQEP 566 (597)
T ss_dssp CCTTCEEEEETTEECCT---TTHHHHHTTCCTTCEEEEEEEETTEEEEEEEECCCC
T ss_pred CCCCCEEEEECCEECCH---HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEecCC
Confidence 99999999999999953 344444543 58999999999999999998886543
No 7
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}
Probab=99.35 E-value=1.2e-12 Score=112.47 Aligned_cols=105 Identities=18% Similarity=0.180 Sum_probs=78.8
Q ss_pred HhcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCC
Q 012727 197 ATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 275 (457)
Q Consensus 197 ~~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~ 275 (457)
..+.|||+.|+++..++.+.....+...++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 14 ~~~~D~~~~y~~~~~~~~~~v~l~~~~~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~ 93 (121)
T 2kom_A 14 SENLYFQGSYNTKKIGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVG 93 (121)
T ss_dssp -------CCCCCCCSCEEEEEEEECCTTCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTT
T ss_pred ccccCccccccCccCCeEEEEEEEcCCCcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCC
Confidence 45669999999998887766555566678999886542111112578999999999999999 99999999999999999
Q ss_pred CCHHHHHHHhcCC-CCCcEEEEEEeCC
Q 012727 276 MGIYDAAERLQGP-EGSPVELTVRSGA 301 (457)
Q Consensus 276 ~~~~~~~~~l~~~-~G~~v~L~v~r~g 301 (457)
++.+++.+.++.. +|+.++|+|.|++
T Consensus 94 ~~~~~~~~~l~~~~~g~~v~l~v~R~g 120 (121)
T 2kom_A 94 KSQEEVVSLLRSTKMEGTVSLLVFRQE 120 (121)
T ss_dssp SCHHHHHHHHHHCCSSCEEEEEEEECC
T ss_pred CCHHHHHHHHhcCCCCCEEEEEEEeCC
Confidence 8778888888753 5899999998876
No 8
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Probab=99.32 E-value=2.9e-12 Score=107.90 Aligned_cols=100 Identities=20% Similarity=0.244 Sum_probs=80.4
Q ss_pred CccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHH
Q 012727 203 FTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDA 281 (457)
Q Consensus 203 Ht~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~ 281 (457)
|+.|+++.+++.+.....+...|+|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++..++
T Consensus 1 ~s~y~~~~~~~~~~~~l~~~~~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~ 80 (111)
T 2koj_A 1 GSVYNTKKVGKRLNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEV 80 (111)
T ss_dssp CCCCCCSSSCEEEEEEEECBTTBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHH
T ss_pred CCcccCcccCcEEEEEEEECCCccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence 78899998887765555556678999987542211112579999999999999999 99999999999999998888888
Q ss_pred HHHhcCC-CCCcEEEEEEeCCe
Q 012727 282 AERLQGP-EGSPVELTVRSGAE 302 (457)
Q Consensus 282 ~~~l~~~-~G~~v~L~v~r~g~ 302 (457)
...++.. +|+.+.|+|.|+++
T Consensus 81 ~~~l~~~~~g~~v~l~v~R~~~ 102 (111)
T 2koj_A 81 VSLLRSTKMEGTVSLLVFRQEE 102 (111)
T ss_dssp HHHHHHCCCSSEEEEEEEECCC
T ss_pred HHHHHhCCCCCeEEEEEEeCCC
Confidence 8888753 58899999988775
No 9
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Probab=99.21 E-value=1.3e-11 Score=105.39 Aligned_cols=101 Identities=20% Similarity=0.263 Sum_probs=72.1
Q ss_pred cCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCC
Q 012727 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES 275 (457)
Q Consensus 199 L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~ 275 (457)
..|||+.|+.++++...... .+. .|+|+.+...... ...+.+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 12 ~~dp~s~y~~~~~~~~v~l~-k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~ 89 (117)
T 2byg_A 12 DLGTENLYFQSMTVVEIKLF-KGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEE 89 (117)
T ss_dssp --------CEEEEEEEEEEE-CBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTT
T ss_pred CCCCcccccCCCceEEEEEE-eCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC
Confidence 34999999999877655432 222 6899988643110 0113479999999999999999 99999999999999998
Q ss_pred CCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 276 MGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 276 ~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.+..++...++. .|+.++|+|.|+++
T Consensus 90 ~~~~~~~~~l~~-~g~~v~l~v~R~~~ 115 (117)
T 2byg_A 90 VTHEEAVAILKN-TSEVVYLKVGKPTT 115 (117)
T ss_dssp CCHHHHHHHHHT-CCSEEEEEEEEEEE
T ss_pred CCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 888888888875 48899999988654
No 10
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}
Probab=99.15 E-value=7e-11 Score=99.80 Aligned_cols=101 Identities=24% Similarity=0.337 Sum_probs=67.4
Q ss_pred HHhcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecC
Q 012727 196 LATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE 274 (457)
Q Consensus 196 l~~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~ 274 (457)
...+.|||+.|+++.+........ ...|+|+.+..... .+.+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 9 ~~~~~d~~t~~~~~~~~~~v~l~~--~~~glG~~l~~~~~---~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~ 83 (112)
T 2r4h_A 9 SGVDLGTENLYFQSMDFYTVELER--GAKGFGFSLRGGRE---YNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTK 83 (112)
T ss_dssp --------------CCEEEEEEEC--BTTBTSEEEEECGG---GTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECT
T ss_pred ccCCCCCcccccCCCceEEEEEEc--CCCccCEEEecccc---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECC
Confidence 345679999999987766543322 22468888754311 13578999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 275 SMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 275 ~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
+++..++...++. .|+.++|+|.|++.
T Consensus 84 ~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 110 (112)
T 2r4h_A 84 NMKHSRAIELIKN-GGRRVRLFLKRGET 110 (112)
T ss_dssp TCCHHHHHHHHHT-TTTEEEEEEECCEE
T ss_pred CCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 9877788777765 68899999988764
No 11
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}
Probab=99.14 E-value=4.8e-12 Score=107.27 Aligned_cols=95 Identities=23% Similarity=0.339 Sum_probs=73.8
Q ss_pred HHHHHHhcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCE
Q 012727 192 IRKMLATLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDT 271 (457)
Q Consensus 192 i~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~ 271 (457)
+.+|+..+ |||+.++.++..+ ++|+.+.... ...+++|..|.++|||+++||++||+|++|||+
T Consensus 5 ~~~~~~~l-dp~~~~l~~~~~~-----------~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~ 68 (114)
T 2edz_A 5 SSGMASTF-NPRECKLSKQEGQ-----------NYGFFLRIEK----DTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGV 68 (114)
T ss_dssp CCCCCCCC-CCEEEEEECCTTC-----------CCSCEEECCT----TCCSCEEECCCTTCTTGGGTCCTTCEEEEESSS
T ss_pred hhhHhhcC-CCEEEEEeCCCCC-----------cccEEEEEec----CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCE
Confidence 34567788 9999998765321 2344443221 135789999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 272 STESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 272 ~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
++.+++..++...++. .|+.++|++.|+++.
T Consensus 69 ~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~~ 99 (114)
T 2edz_A 69 FVDKEEHAQVVELVRK-SGNSVTLLVLDGDSY 99 (114)
T ss_dssp BCSSSCHHHHHHHHHH-TCSEEEEEEECHHHH
T ss_pred ECCCCCHHHHHHHHHc-CCCEEEEEEEECCcc
Confidence 9999877888877764 489999999987754
No 12
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Probab=99.12 E-value=1.4e-10 Score=102.06 Aligned_cols=87 Identities=25% Similarity=0.308 Sum_probs=65.6
Q ss_pred eeeeeEEEeecCCC---------CCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcE
Q 012727 223 LTGVGLSIGYPTAS---------DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPV 293 (457)
Q Consensus 223 ~~glGi~~~~~~~~---------~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v 293 (457)
..++|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.+++..++...++..+|+.+
T Consensus 37 ~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~g~~v 116 (139)
T 2vz5_A 37 NLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVV 116 (139)
T ss_dssp EEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHCCTTCSEE
T ss_pred cccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCEE
Confidence 45788887431110 012468999999999999999999999999999999998777888888887788999
Q ss_pred EEEEEeCCeEEEEEEE
Q 012727 294 ELTVRSGAEIRHLALT 309 (457)
Q Consensus 294 ~L~v~r~g~~~~vtl~ 309 (457)
+|+|.|+++..++.++
T Consensus 117 ~l~v~R~g~~~~v~~~ 132 (139)
T 2vz5_A 117 RLLVTRQSLQKAVQQS 132 (139)
T ss_dssp EEEEEECC-------C
T ss_pred EEEEEECCEEEEEEEe
Confidence 9999999987666554
No 13
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Probab=99.10 E-value=8e-11 Score=98.49 Aligned_cols=96 Identities=27% Similarity=0.421 Sum_probs=73.3
Q ss_pred ccChhhhhhhhccc--CCceeeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHH
Q 012727 206 FLEPEKFNSLRSGT--QGALTGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYD 280 (457)
Q Consensus 206 ~l~~~~~~~~~~~~--~~~~~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~ 280 (457)
|+.+++++.+.... .+...++|+.+...... ...+.+++|..|.++|||+++| |++||+|++|||+++.+++..+
T Consensus 5 ~~~~~~~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~ 84 (108)
T 2jre_A 5 YSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSD 84 (108)
T ss_dssp CCSSSSCEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHH
T ss_pred cccccCcEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHH
Confidence 44556665554444 45667899988542111 1124589999999999999999 9999999999999999987788
Q ss_pred HHHHhcCCCCCcEEEEEEeCCe
Q 012727 281 AAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 281 ~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
+...++. .|+.++|++.|+++
T Consensus 85 ~~~~l~~-~g~~v~l~v~R~~~ 105 (108)
T 2jre_A 85 VVEVLRN-AGNPVRLLLIRRLP 105 (108)
T ss_dssp HHHHHHH-HCSEEEEEEEECCC
T ss_pred HHHHHHc-CCCeEEEEEEeCCc
Confidence 8877765 78899999988775
No 14
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B
Probab=99.09 E-value=2.1e-10 Score=96.55 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=72.1
Q ss_pred CceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCC-CCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL-~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
+.+.|+|+.+.... ...+++|..|.++|||+++|+ ++||+|++|||+++.+++.+++...++...|+.+.|++.|
T Consensus 10 ~~~~glG~~~~~~~----~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 85 (112)
T 1qau_A 10 RKVGGLGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 85 (112)
T ss_dssp BTTTBTSEEEEECS----SSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEEEEE
T ss_pred CCCCceeEEEEecC----CCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEEEEe
Confidence 34567899886542 134789999999999999998 9999999999999999777888888877778999999999
Q ss_pred CCeEEEEEEEe
Q 012727 300 GAEIRHLALTR 310 (457)
Q Consensus 300 ~g~~~~vtl~r 310 (457)
+++..+++++.
T Consensus 86 ~g~~~~~~~~~ 96 (112)
T 1qau_A 86 GPEGFTTHLET 96 (112)
T ss_dssp CCTTSEEEEEE
T ss_pred CCcccceEeee
Confidence 98877777764
No 15
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=96.14 Aligned_cols=92 Identities=21% Similarity=0.299 Sum_probs=70.7
Q ss_pred CCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHH
Q 012727 201 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYD 280 (457)
Q Consensus 201 DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~ 280 (457)
|||+.+.+..- . ......|+|+.+.... ..++++|..|.++|||+++||++||+|++|||+++.+++..+
T Consensus 3 Dp~~~~~~~~~--~----l~~~~~g~G~~~~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~ 72 (98)
T 2jxo_A 3 DPFTMLRPRLC--T----MKKGPSGYGFNLHSDK----SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGD 72 (98)
T ss_dssp CSSCSSCCEEE--E----EECTTTCCCEEEECCC----SSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHH
T ss_pred CCCccCCcEEE--E----EEeCCCcccEEEEecC----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHH
Confidence 78888765321 1 1122357899886541 134799999999999999999999999999999999977788
Q ss_pred HHHHhcCCCCCcEEEEEEeCCe
Q 012727 281 AAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 281 ~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
+.+.++...++.+.+++.|+++
T Consensus 73 ~~~~l~~~~~~~~~l~v~R~g~ 94 (98)
T 2jxo_A 73 VVSAIRAGGDETKLLVVDRETD 94 (98)
T ss_dssp HHHHHHTTTTEEEEEECCHHHH
T ss_pred HHHHHHhCCCcEEEEEEECCch
Confidence 8888887777777788877653
No 16
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=99.07 E-value=7.9e-11 Score=99.80 Aligned_cols=97 Identities=24% Similarity=0.287 Sum_probs=74.7
Q ss_pred CCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHH
Q 012727 201 DPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIY 279 (457)
Q Consensus 201 DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~ 279 (457)
|||+.|+.+.+...... .....++|+.+.... +...++++|..|.++|||+++| |++||+|++|||+++.+++..
T Consensus 7 Dp~s~~~~~~~~~~v~l--~~~~~glG~~l~~~~--~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~ 82 (116)
T 2dm8_A 7 GPATCPIVPGQEMIIEI--SKGRSGLGLSIVGGK--DTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHE 82 (116)
T ss_dssp CSSSCCCCTTSCEEEEE--ECCSSCCCCCCBCCT--TSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHH
T ss_pred CcccCccCCCCEEEEEE--EECCCcccEEEeCCC--CCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHH
Confidence 99999999876543322 233467888775331 1111489999999999999999 999999999999999998778
Q ss_pred HHHHHhcCCCCCcEEEEEEeCCe
Q 012727 280 DAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 280 ~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
++...++. .++.++|+|.|++.
T Consensus 83 ~~~~~l~~-~~~~v~l~v~R~~~ 104 (116)
T 2dm8_A 83 EAITALRQ-TPQKVRLVVYRDEA 104 (116)
T ss_dssp HHHHHHHT-CCSEEEEEEECCSS
T ss_pred HHHHHHHh-CCCeEEEEEEeCCc
Confidence 88877765 34889999988775
No 17
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}
Probab=99.06 E-value=2.5e-10 Score=97.58 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=71.4
Q ss_pred cCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCC
Q 012727 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMG 277 (457)
Q Consensus 199 L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~ 277 (457)
.+|+|+.|+.+...+..... .+...++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~v~l~-k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~ 90 (118)
T 3b76_A 12 DLGTENLYFQSMHEKVVNIQ-KDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVS 90 (118)
T ss_dssp ------CCCEEEEEEEEEEE-CCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSC
T ss_pred CCCccccccCCCCcEEEEEE-eCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCC
Confidence 45788888887665543322 333467898886542111223468999999999999999 9999999999999999888
Q ss_pred HHHHHHHhcCCCCCcEEEEEEeC
Q 012727 278 IYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 278 ~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
..++...++. .+++++|++.|.
T Consensus 91 ~~~~~~~l~~-~~~~v~L~v~R~ 112 (118)
T 3b76_A 91 RSEAVALLKR-TSSSIVLKALEV 112 (118)
T ss_dssp HHHHHHHHHS-CCSEEEEEEEEE
T ss_pred HHHHHHHHHc-CCCeEEEEEEEC
Confidence 8888888875 477899988764
No 18
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.05 E-value=3.9e-11 Score=99.40 Aligned_cols=95 Identities=26% Similarity=0.353 Sum_probs=72.0
Q ss_pred ccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHH
Q 012727 204 TRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAA 282 (457)
Q Consensus 204 t~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~ 282 (457)
+.|+++++++.+.........|+|+.+.... ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++.
T Consensus 2 S~~~~~~~~~~~~v~l~~~~~g~G~~~~~~~---~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~ 78 (103)
T 1wfv_A 2 SSGSSGQDFDYFTVDMEKGAKGFGFSIRGGR---EYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAI 78 (103)
T ss_dssp CCCCSCCCSCCEECCEECCTTSSSBCCEEET---TTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCCccCceEEEEEEecCCCcCCEEEeccc---cCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence 4566666665544333344467888775431 112378999999999999999 999999999999999998777877
Q ss_pred HHhcCCCCCcEEEEEEeCCe
Q 012727 283 ERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 283 ~~l~~~~G~~v~L~v~r~g~ 302 (457)
..++ ..|+.++|++.|+++
T Consensus 79 ~~~~-~~g~~v~l~v~R~~~ 97 (103)
T 1wfv_A 79 ELIK-SGGRRVRLLLKRGTG 97 (103)
T ss_dssp HHHH-HHCSEECEEEECTTC
T ss_pred HHHH-cCCCeEEEEEEECCC
Confidence 7776 568899999988764
No 19
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=94.86 Aligned_cols=78 Identities=31% Similarity=0.466 Sum_probs=63.5
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
.++|+.+....+. ....+++|..|.++|||+++||++||+|++|||+++.+++..++...++.. |+.+.|++.|+++.
T Consensus 14 ~~~G~~l~~~~~~-~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 91 (96)
T 2v90_A 14 QGFGFLLREEKGL-DGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQ-GSCVSLTVVDPEAD 91 (96)
T ss_dssp TBSCEEEEEEECT-TSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEECCCTT
T ss_pred CcccEEEEeccCC-CCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEECCCCc
Confidence 4688887653211 112368999999999999999999999999999999998778888888764 89999999988754
No 20
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*
Probab=99.04 E-value=2.1e-10 Score=92.86 Aligned_cols=76 Identities=28% Similarity=0.317 Sum_probs=62.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
.++|+.+..... .+.+++|..|.++|||+++||++||+|++|||+++.++...++...+.. +|+.++|++.|+++.
T Consensus 13 ~~~G~~l~~~~~---~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~g~~ 88 (91)
T 2pkt_A 13 GPWGFRLVGGKD---FEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKG-CTDNLTLTVARSEHE 88 (91)
T ss_dssp SCCSEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEEECCC
T ss_pred CCCCEEEEccCC---CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCcc
Confidence 357777653211 1247899999999999999999999999999999999876688888876 889999999988764
No 21
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}
Probab=99.04 E-value=3.1e-10 Score=92.81 Aligned_cols=81 Identities=30% Similarity=0.501 Sum_probs=62.8
Q ss_pred ceeeeeEEEeecCCC---CCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 222 ALTGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 222 ~~~glGi~~~~~~~~---~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
...|+|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.++...++...+.. +|+.++|++.
T Consensus 12 ~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~ 90 (97)
T 2w4f_A 12 QTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRVW 90 (97)
T ss_dssp BTTBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEE
T ss_pred CCCceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC-CCCeEEEEEE
Confidence 356789988642110 112468999999999999999999999999999999999865555555544 7899999999
Q ss_pred eCCeE
Q 012727 299 SGAEI 303 (457)
Q Consensus 299 r~g~~ 303 (457)
|+++.
T Consensus 91 R~g~~ 95 (97)
T 2w4f_A 91 RERET 95 (97)
T ss_dssp CCSSC
T ss_pred eCCcc
Confidence 98753
No 22
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=99.04 E-value=3e-10 Score=95.31 Aligned_cols=82 Identities=27% Similarity=0.455 Sum_probs=64.5
Q ss_pred CceeeeeEEEeecCC---CCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 221 GALTGVGLSIGYPTA---SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 221 ~~~~glGi~~~~~~~---~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
+...|+|+.+..... ......+++|..|.++|||+++||++||+|++|||+++.+....++...+.. +|+.++|+|
T Consensus 23 ~~~~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v 101 (110)
T 1x5q_A 23 RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRG-AGTAVQMRV 101 (110)
T ss_dssp CSSSSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEE
T ss_pred cCCCeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhC-CCCeEEEEE
Confidence 346789998863211 0112468999999999999999999999999999999998766666666654 789999999
Q ss_pred EeCCeE
Q 012727 298 RSGAEI 303 (457)
Q Consensus 298 ~r~g~~ 303 (457)
.|+++.
T Consensus 102 ~R~g~~ 107 (110)
T 1x5q_A 102 WRESGP 107 (110)
T ss_dssp EECSSC
T ss_pred EECCcc
Confidence 998764
No 23
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A
Probab=99.04 E-value=7e-11 Score=102.23 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=77.1
Q ss_pred CCCCccccChhhhhhhh--cccC-CceeeeeEEEeecCCC-CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecC
Q 012727 200 DDPFTRFLEPEKFNSLR--SGTQ-GALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE 274 (457)
Q Consensus 200 ~DpHt~~l~~~~~~~~~--~~~~-~~~~glGi~~~~~~~~-~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~ 274 (457)
.|||+.|+++.+.+... .... ....|+|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~ 89 (127)
T 1wg6_A 10 GEPDCYALSLESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLL 89 (127)
T ss_dssp SCSSSCCSSCCCCEEEEEEEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEEST
T ss_pred CCCcccccCCCCCCceEEEEEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECC
Confidence 47999999887755322 2222 4567888887543110 0001368999999999999999 9999999999999999
Q ss_pred CCCHHHHHHHhcC------CCCCcEEEEEEeCCe
Q 012727 275 SMGIYDAAERLQG------PEGSPVELTVRSGAE 302 (457)
Q Consensus 275 ~~~~~~~~~~l~~------~~G~~v~L~v~r~g~ 302 (457)
+++..++...++. ++++.|+|+|.|++.
T Consensus 90 ~~~~~~~~~~l~~~~~~~g~~~~~v~l~v~R~~~ 123 (127)
T 1wg6_A 90 GKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSG 123 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEEEECSC
T ss_pred CCCHHHHHHHHHHhhccccCCCCEEEEEEEeCCC
Confidence 9888888888874 358899999988754
No 24
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Probab=99.02 E-value=1e-09 Score=88.53 Aligned_cols=74 Identities=20% Similarity=0.373 Sum_probs=62.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..++...++.. |+.+.|++.|++.
T Consensus 15 ~g~G~~~~~~~----~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 88 (90)
T 2he4_A 15 QGYGFNLHSDK----SRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAR-EDEARLLVVGPST 88 (90)
T ss_dssp TBCCEEEEECS----SSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-SSEEEEEEECCCC
T ss_pred CCccEEEEccC----CCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEccCC
Confidence 46888876542 13479999999999999999999999999999999998878888888764 8899999988653
No 25
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A
Probab=99.01 E-value=7.2e-10 Score=88.91 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.+++..++.+.++... +.+.|++.|+++
T Consensus 12 ~~lG~~l~~~~~---~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~~~ 86 (87)
T 2pa1_A 12 APWGFRITGGRD---FHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRITS 86 (87)
T ss_dssp SCCSEEEEEEGG---GTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCC-SSEEEEEEECCC
T ss_pred CccCEEEecccC---CCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEecCC
Confidence 357887753311 124789999999999999999999999999999999977788888887655 899999998874
No 26
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=99.01 E-value=3.4e-10 Score=91.41 Aligned_cols=73 Identities=23% Similarity=0.293 Sum_probs=59.0
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g 301 (457)
..++|+.+... ..+++|..|.++|||+++||++||+|++|||+++...+..++...+.. .+|+.+.|++.|+|
T Consensus 16 ~~~lG~~~~~~------~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 89 (90)
T 2eaq_A 16 SLDFGFTIKWD------IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVMDVRRYG 89 (90)
T ss_dssp SSCCSEEEEEE------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred CCcccEEEEec------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEEEEEeCC
Confidence 34578877544 458999999999999999999999999999999955455777766654 36789999998876
No 27
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}
Probab=99.00 E-value=6.1e-10 Score=95.79 Aligned_cols=99 Identities=20% Similarity=0.345 Sum_probs=66.2
Q ss_pred hcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCC------CCCCCceEEEEecCCCcccccC-CCCCCEEEEECC
Q 012727 198 TLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTAS------DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDD 270 (457)
Q Consensus 198 ~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~------~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG 270 (457)
.+.|+|+.|+.|..+...+. ...++|+.+...... .....+++|..|.++|||++|| |++||+|++|||
T Consensus 14 ~~~d~~s~~~~p~~v~l~k~----~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng 89 (123)
T 2iwq_A 14 GTENLYFQSMQPRRVELWRE----PSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDG 89 (123)
T ss_dssp ---------CCCEEEEECCC----TTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETT
T ss_pred ccccCCcccCCCEEEEEEec----CCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECC
Confidence 34588999998876654322 223577766422110 0123579999999999999999 999999999999
Q ss_pred EecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 271 TSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 271 ~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
+++.+++.+++.+.++.. +..++|+|.|.+
T Consensus 90 ~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~ 119 (123)
T 2iwq_A 90 MDLRDASHEQAVEAIRKA-GNPVVFMVQSII 119 (123)
T ss_dssp EECTTCCHHHHHHHHHHC-CSSEEEEEECCC
T ss_pred EECCCCCHHHHHHHHHcC-CCeEEEEEEECC
Confidence 999998778888888754 558999988754
No 28
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=99.00 E-value=7.7e-10 Score=96.34 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=73.2
Q ss_pred hcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCC---------CCCCceEEEEecCCCcccccCCCCCCEEEEE
Q 012727 198 TLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASD---------GSSAGLVVISSMPGGPANRAGILSGDVILAI 268 (457)
Q Consensus 198 ~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~---------~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaI 268 (457)
.+.|+|+.|..+...-.+.. ....|+|+.+....... ....+++|..|.++|||+++||++||+|++|
T Consensus 16 ~~~~~~s~~~~~~r~v~l~r---~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~V 92 (132)
T 3l4f_D 16 VPRGSGSDYIIKEKTVLLQK---KDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEV 92 (132)
T ss_dssp ---CCSCCCCCCCCEEEEEC---CTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEE
T ss_pred ccCCCCCCcCCCCEEEEEEE---CCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEE
Confidence 34589999987655433322 12346888876542110 0112689999999999999999999999999
Q ss_pred CCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 269 DDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 269 dG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
||+++..++..++...++. .|+.+.|++.+.+.
T Consensus 93 ng~~v~~~~~~~~~~~l~~-~g~~v~l~v~~~~~ 125 (132)
T 3l4f_D 93 NGQNVVKVGHRQVVNMIRQ-GGNTLMVKVVMVTR 125 (132)
T ss_dssp SSSBCTTSCHHHHHHHHHH-TTTEEEEEEECCCC
T ss_pred CCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 9999999888888888875 77889999876543
No 29
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Probab=99.00 E-value=3.6e-10 Score=96.40 Aligned_cols=98 Identities=26% Similarity=0.352 Sum_probs=68.6
Q ss_pred CCCCccccChhhhhh--hhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCC
Q 012727 200 DDPFTRFLEPEKFNS--LRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESM 276 (457)
Q Consensus 200 ~DpHt~~l~~~~~~~--~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~ 276 (457)
.|||+.|. +.++.. ...-......|+|+.+.... +...+.++|..|.++|||+++ ||++||+|++|||+++..+
T Consensus 3 ~dP~s~~~-~~~~~~~~~~~~~~~~~~glG~~i~gg~--~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~ 79 (118)
T 1v6b_A 3 EGAATMFS-PEQIAGKDVRLLRIKKEGSLDLALEGGV--DSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDY 79 (118)
T ss_dssp CCCCSSSC-HHHHSSCCEEEEEEESCSCCCCEEEEBT--TSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTC
T ss_pred CCCcceec-ccccCCceEEEEEECCCCccCEEEEccc--CCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCC
Confidence 48999884 443321 11000011237888775331 112345899999999999999 9999999999999999998
Q ss_pred CHHHHHHHhcCC---CCCcEEEEEEeC
Q 012727 277 GIYDAAERLQGP---EGSPVELTVRSG 300 (457)
Q Consensus 277 ~~~~~~~~l~~~---~G~~v~L~v~r~ 300 (457)
+.+++.+.++.. .|+.++|++.|.
T Consensus 80 ~~~~~~~~l~~~~~~~g~~v~l~v~r~ 106 (118)
T 1v6b_A 80 TLAEAEAALQKAWNQGGDWIDLVVAVC 106 (118)
T ss_dssp BHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEEEeC
Confidence 877777766532 478999998874
No 30
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Probab=98.99 E-value=9.7e-10 Score=90.06 Aligned_cols=75 Identities=29% Similarity=0.425 Sum_probs=62.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.... ...++++|..|.++|||+++| |++||+|++|||+++.+++..++...++ ..|+.++|++.|+++
T Consensus 16 ~~lG~~i~~~~---~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~-~~g~~v~l~v~R~~~ 91 (97)
T 1n7e_A 16 GPLGITISGTE---EPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ-MAGETVTLKIKKQTD 91 (97)
T ss_dssp SCCCEEEECCS---STTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEECCCC
T ss_pred CCcCEEEEccc---CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEeCCC
Confidence 35888876431 112579999999999999999 9999999999999999887888888887 578899999988775
No 31
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=98.99 E-value=2.9e-10 Score=92.08 Aligned_cols=74 Identities=24% Similarity=0.371 Sum_probs=58.2
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++..++...+... |+.++|++.|++..
T Consensus 15 ~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~r~~~~ 88 (91)
T 2vsp_A 15 GYGFHLNAIR----GLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSS-GKNVTLLVCGKKAQ 88 (91)
T ss_dssp BTSCCCBCCT----TCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTS-CSEEEEEEEC----
T ss_pred cccEEEEecc----CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCEEEEEEEeCCcc
Confidence 5777664331 13478999999999999999999999999999999977778888888765 89999999987753
No 32
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=6.7e-11 Score=102.07 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCCccccChhhhh-hhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHH
Q 012727 201 DPFTRFLEPEKFN-SLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIY 279 (457)
Q Consensus 201 DpHt~~l~~~~~~-~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~ 279 (457)
|+|+.|+++++++ .+.....+.+.|.... . .....+++|..|.++|||+++||++||+|++|||+++..++..
T Consensus 26 ~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~-~-----~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~ 99 (126)
T 2yuy_A 26 RHFIVYPPESAIQFSYKDEENGNRGGKQRN-R-----LEPMDTIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYS 99 (126)
T ss_dssp CCCCCCCCSSCCCSCSSSCCCCSCCCTTSC-C-----CCCCCCCCBCCCCSSSHHHHHTCCSSCCCCEETTEECSSCCHH
T ss_pred cCccccCCHHHHHHHHHhhcCcceeceeee-c-----ccCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHH
Confidence 7999999988876 5555555665541110 0 0113578899999999999999999999999999999977788
Q ss_pred HHHHHhcCCCCCcEEEEEEeCCe
Q 012727 280 DAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 280 ~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
++...++. .|+.++|+|.|+++
T Consensus 100 ~~~~~l~~-~g~~v~l~v~r~~~ 121 (126)
T 2yuy_A 100 QVIALIQN-SDTTLELSVMPKDS 121 (126)
T ss_dssp HHHHHHHT-CTTEEEEECCCCCC
T ss_pred HHHHHHHc-CCCEEEEEEEECCC
Confidence 88888875 48999999988764
No 33
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A
Probab=98.99 E-value=1.5e-09 Score=88.66 Aligned_cols=78 Identities=28% Similarity=0.439 Sum_probs=62.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.........+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.++|++.|++.
T Consensus 16 ~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 94 (96)
T 1d5g_A 16 NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLLEKGQS 94 (96)
T ss_dssp SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHS-CCSEEEEEEECCSC
T ss_pred CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcCCC
Confidence 46788876432111123579999999999999999 99999999999999998877888877765 68899999988753
No 34
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Probab=98.99 E-value=1.7e-09 Score=88.02 Aligned_cols=69 Identities=26% Similarity=0.447 Sum_probs=59.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+.. +.+++|..|.++|||+++||++||+|++|||+++..+...++...++ .|+.++|+|.|++
T Consensus 19 ~~~G~~l~~-------~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~g~~v~l~v~R~~ 87 (93)
T 2dls_A 19 HGFGFTVSG-------DRIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK--SGAYVALTLLGSS 87 (93)
T ss_dssp SSCCEEEEC-------SSSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT--SSSEEEEEEECCC
T ss_pred CceeEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc--CCCEEEEEEEECC
Confidence 468888753 25789999999999999999999999999999999987667777775 6899999998865
No 35
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A
Probab=98.98 E-value=1.6e-09 Score=89.73 Aligned_cols=79 Identities=28% Similarity=0.340 Sum_probs=63.4
Q ss_pred ceeeeeEEEeecCCC---------CCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCc
Q 012727 222 ALTGVGLSIGYPTAS---------DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSP 292 (457)
Q Consensus 222 ~~~glGi~~~~~~~~---------~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~ 292 (457)
...++|+.+...... .....+++|..|.++|||+++||++||+|++|||+++.+...+++...++...|+.
T Consensus 17 ~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~ 96 (104)
T 3sfj_A 17 ENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEV 96 (104)
T ss_dssp TEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHTCTTCSE
T ss_pred CCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCE
Confidence 345688887622111 12356799999999999999999999999999999999887788888888778899
Q ss_pred EEEEEEeC
Q 012727 293 VELTVRSG 300 (457)
Q Consensus 293 v~L~v~r~ 300 (457)
+.|++.|+
T Consensus 97 v~l~v~R~ 104 (104)
T 3sfj_A 97 VRLLVTRQ 104 (104)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEcC
Confidence 99998763
No 36
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.98 E-value=2.9e-10 Score=94.38 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=63.0
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEEe
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRS 299 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~-G~~v~L~v~r 299 (457)
...|+|+.+.... ....+++|..|.++|||+++| |++||+|++|||+++..++..++.+.++... |+.++|+|.|
T Consensus 18 ~~~g~G~~i~~g~---~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 94 (103)
T 1uep_A 18 MESGFGFRILGGD---EPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRR 94 (103)
T ss_dssp SSSSCCEEECCCC---STTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEE
T ss_pred CCCccCEEEeeec---CCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCcEEEEEEe
Confidence 3467899885421 113578999999999999999 9999999999999999887788888876543 7899999987
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
++.
T Consensus 95 ~~~ 97 (103)
T 1uep_A 95 KVL 97 (103)
T ss_dssp ECC
T ss_pred CCC
Confidence 653
No 37
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=98.98 E-value=6.3e-10 Score=96.07 Aligned_cols=77 Identities=25% Similarity=0.328 Sum_probs=61.2
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecC-CCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE-SMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~-~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++. .++..++...++. .++.++|+|.|+.
T Consensus 37 ~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~r~~ 115 (128)
T 2db5_A 37 GGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQ-TTGSLRLIVAREP 115 (128)
T ss_dssp SCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHH-CCSEEEEEEEECC
T ss_pred CccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCeEEEEEEcCC
Confidence 56888774321111112378999999999999999 9999999999999997 8888888888875 6789999998765
No 38
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A
Probab=98.97 E-value=1.4e-09 Score=87.80 Aligned_cols=74 Identities=22% Similarity=0.373 Sum_probs=59.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.|+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..++...++...++.+.+.++|++
T Consensus 14 ~g~G~~~~~~~----~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~~~~r~~ 87 (91)
T 1g9o_A 14 NGYGFHLHGEK----GKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLLVVDPET 87 (91)
T ss_dssp TBCCEEEEECT----TCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred CcccEEEEecC----CCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEEEcCCc
Confidence 36888876542 135899999999999999999999999999999999988888888887665555555555554
No 39
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}
Probab=98.97 E-value=1.5e-09 Score=89.04 Aligned_cols=77 Identities=23% Similarity=0.297 Sum_probs=62.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.+.|++.|++.
T Consensus 15 ~~lG~~l~~~~~--~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 91 (98)
T 2opg_A 15 TGLGLSIVGGSD--TLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQ-TPQRVRLTLYRDEA 91 (98)
T ss_dssp TBTCEEEEECTT--STTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEECSS
T ss_pred CcccEEEecCCC--CCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCCC
Confidence 468888764411 111589999999999999999 99999999999999999877777777764 45899999988875
Q ss_pred E
Q 012727 303 I 303 (457)
Q Consensus 303 ~ 303 (457)
.
T Consensus 92 ~ 92 (98)
T 2opg_A 92 P 92 (98)
T ss_dssp C
T ss_pred C
Confidence 4
No 40
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}
Probab=98.97 E-value=1.3e-09 Score=87.60 Aligned_cols=75 Identities=23% Similarity=0.374 Sum_probs=60.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+..... .+.+++|..|.++|||+++||++||+|++|||+++.++...++...++.. |+.+.|++.|++.
T Consensus 13 ~~~G~~l~~g~~---~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~-g~~v~l~v~R~g~ 87 (88)
T 2uzc_A 13 APWGFRLQGGKD---FNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGC-TGSLNMTLQRESD 87 (88)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSEEEEEEECCCC
T ss_pred CcccEEEECcCC---CCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEeCCC
Confidence 357777753210 13468999999999999999999999999999999998877887777654 8899999988764
No 41
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A
Probab=98.96 E-value=1.1e-09 Score=89.83 Aligned_cols=72 Identities=18% Similarity=0.266 Sum_probs=58.5
Q ss_pred ceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 222 ALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
...|+|+.+... ..+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+.++.|++.|.
T Consensus 18 ~~~glG~~~~~~------~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 90 (96)
T 2qkv_A 18 AGKELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKG-ANGKVSMEVTRP 90 (96)
T ss_dssp TTBCCCEEEEEC------SSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEECC
T ss_pred CCCCccEEEEeC------CCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCcEEEEEEeC
Confidence 445788877543 3579999999999999999 99999999999999998766666666654 456799998775
No 42
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Probab=98.96 E-value=1.1e-09 Score=87.46 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=57.6
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
..++||.+. ++ .|..++++|||+++||++||+|++|||+++.+++.+++.++++ ..|++|+|++.+
T Consensus 15 ~g~~Gf~i~---------~g-~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr-~~g~~V~L~v~p 80 (82)
T 1r6j_A 15 TGHVGFIFK---------NG-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMP 80 (82)
T ss_dssp TSCCCEEEE---------TT-EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEEE
T ss_pred CCCeEEEEE---------CC-EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHh-cCCCEEEEEEEe
Confidence 346888874 12 4789999999999999999999999999999999999999998 789999998864
No 43
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}
Probab=98.95 E-value=2.1e-09 Score=93.82 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=60.2
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|..|.++|||+ |||++||+|++|||+++.++ .++...+.. ++|++++|++.|+|+.++++++..+
T Consensus 56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 126 (134)
T 2l97_A 56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASS--TDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNK 126 (134)
T ss_dssp CSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCH--HHHHHHHHHSSTTCEEEEEEEETTEEEEEEEECCC
T ss_pred CCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 3678999999999999 99999999999999999885 566655554 3799999999999999998887654
No 44
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}
Probab=98.95 E-value=2.3e-09 Score=86.13 Aligned_cols=73 Identities=23% Similarity=0.436 Sum_probs=57.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~-~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+.... ..++++|..+ ++|||+ +||++||+|++|||+++.+++..++...++ ..+|++++|++.|+++
T Consensus 14 ~g~G~~~~~~~----~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~ 87 (88)
T 3bpu_A 14 MGFGFTIADSP----GGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVTLLVQRQTR 87 (88)
T ss_dssp TBSSCEEEECT----TSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEEECC
T ss_pred CceeEEEEecC----CCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEEEEEEeCCc
Confidence 46888876441 1246677766 999999 999999999999999999988788888776 4678999999988764
No 45
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1
Probab=98.95 E-value=1.8e-09 Score=87.39 Aligned_cols=71 Identities=25% Similarity=0.361 Sum_probs=59.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+... .+++|..|.++|||+++||++||+|++|||+++.+++..++...++. .+..+.|++.|++.
T Consensus 14 ~g~G~~l~~~-------~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~ 84 (91)
T 2f5y_A 14 DGFGFTICCD-------SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRS-CPSEIILLVWRMVP 84 (91)
T ss_dssp TBTSEEEECS-------SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHT-CSSEEEEEEEECC-
T ss_pred CCccEEEecC-------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 4578877533 46899999999999999999999999999999998877888777764 56689999988764
No 46
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A
Probab=98.95 E-value=3.5e-09 Score=87.48 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=59.9
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
.++++|..|.++|||+. ||++||+|++|||+++.++ .++...+.. .+|+.++|++.|+|+.++++++...
T Consensus 6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 76 (100)
T 3i18_A 6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGDKNEQADIKLTA 76 (100)
T ss_dssp CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEE
T ss_pred CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEec
Confidence 46899999999999995 9999999999999999885 666666654 4789999999999998888877543
No 47
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}
Probab=98.95 E-value=1.5e-09 Score=87.33 Aligned_cols=75 Identities=23% Similarity=0.365 Sum_probs=60.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+..... .+.+++|..|.++|||+++||++||+|++|||+++.+++..++...+.. .|+.+.|++.|+++
T Consensus 13 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 87 (89)
T 2q3g_A 13 APWGFRLQGGKD---FNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRA-CGERLSLGLSRAIT 87 (89)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHT-CTTEEEEEEEEECC
T ss_pred CcccEEEECcCC---CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEEEEEEeCCC
Confidence 457887753211 1346889999999999999999999999999999998877788777764 48889999988664
No 48
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}
Probab=98.95 E-value=4.5e-09 Score=87.78 Aligned_cols=85 Identities=25% Similarity=0.387 Sum_probs=64.8
Q ss_pred eeeeEEEeecCCCC--CCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~--~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+....+.. ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .+..++|++.|+
T Consensus 13 ~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 91 (106)
T 4amh_A 13 KGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKN-TSDFVYLKVAKP 91 (106)
T ss_dssp CCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHS-CCSEEEEEEECC
T ss_pred CccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 45777775332111 123479999999999999999 99999999999999998877888777765 567999999987
Q ss_pred Ce---EEEEEEE
Q 012727 301 AE---IRHLALT 309 (457)
Q Consensus 301 g~---~~~vtl~ 309 (457)
++ ..+++++
T Consensus 92 ~~~~~~~~v~l~ 103 (106)
T 4amh_A 92 GSGEKIMEIKLI 103 (106)
T ss_dssp SSSCSEEEEEEE
T ss_pred CCCCeEEEEEEe
Confidence 63 3445554
No 49
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Probab=98.94 E-value=1.8e-09 Score=89.78 Aligned_cols=86 Identities=23% Similarity=0.307 Sum_probs=62.5
Q ss_pred eeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+....+. ...+.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.+.|++.|+
T Consensus 14 ~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 92 (105)
T 2awx_A 14 KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKN-TSDFVYLKVAKP 92 (105)
T ss_dssp TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHS-CCSEEEEEEECC
T ss_pred CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 4688887643110 0113479999999999999999 99999999999999998777777777764 478999999998
Q ss_pred CeEEEEEEEe
Q 012727 301 AEIRHLALTR 310 (457)
Q Consensus 301 g~~~~vtl~r 310 (457)
+......+++
T Consensus 93 ~~~~~~~~~p 102 (105)
T 2awx_A 93 TSMYISRHHH 102 (105)
T ss_dssp CC--------
T ss_pred CCCCCccccc
Confidence 8766655543
No 50
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=1.2e-09 Score=88.24 Aligned_cols=73 Identities=18% Similarity=0.278 Sum_probs=61.5
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~-AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+... .+++++|..|.++|||++ +||++||+|++|||+++.+++.+++.+.++..++ .++|++.|++.
T Consensus 13 ~~lG~~i~~~-----~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~r~~~ 86 (88)
T 1kwa_A 13 EPMGITLKMN-----ELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRG-SITFKIVPSYR 86 (88)
T ss_dssp SCCCEEEECS-----CGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCE-EEEEEEECCCC
T ss_pred CceeEEEEeC-----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC-cEEEEEECCcC
Confidence 4688888642 135799999999999999 8999999999999999998778899888887666 88898887654
No 51
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}
Probab=98.94 E-value=8.9e-10 Score=90.14 Aligned_cols=79 Identities=27% Similarity=0.362 Sum_probs=62.9
Q ss_pred eeeeEEEeecCCC-CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~-~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.++|++.|++
T Consensus 14 ~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~ 92 (97)
T 2jil_A 14 NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEAALLIEYDV 92 (97)
T ss_dssp TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEEC
T ss_pred CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 4678877543110 0113478999999999999999 99999999999999999877888888876 8899999998876
Q ss_pred eE
Q 012727 302 EI 303 (457)
Q Consensus 302 ~~ 303 (457)
+.
T Consensus 93 ~~ 94 (97)
T 2jil_A 93 SE 94 (97)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 52
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.94 E-value=6.9e-10 Score=92.10 Aligned_cols=78 Identities=29% Similarity=0.511 Sum_probs=62.7
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
..|+|+.+...... ..+.+++|..|.++|||+++| |++||+|++|||+++..++..++...++. .|+.+.|+|.|++
T Consensus 21 ~~g~G~~l~~~~~~-~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g 98 (104)
T 2djt_A 21 YAGFGLTLGGGRDV-AGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRA-GGPQLHLVIRRPL 98 (104)
T ss_dssp SSSCCEEEECCEET-TEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHH-TCSEEEEEECCCC
T ss_pred CCCccEEEEeccCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 46789988642110 013578999999999999999 99999999999999999877787777765 6889999998876
Q ss_pred e
Q 012727 302 E 302 (457)
Q Consensus 302 ~ 302 (457)
+
T Consensus 99 ~ 99 (104)
T 2djt_A 99 S 99 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.94 E-value=4e-10 Score=97.12 Aligned_cols=86 Identities=23% Similarity=0.370 Sum_probs=71.8
Q ss_pred CceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCC-CCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL-~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
+.+.|+|+.+.... ...+++|..|.++|||+++|+ ++||+|++|||+++.+++..++.+.++...|+.+.|++.|
T Consensus 17 ~~~~glG~~~~~~~----~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R 92 (127)
T 1b8q_A 17 RKVGGLGFLVKERV----SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILR 92 (127)
T ss_dssp TTTSCCSCCEEECT----TSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEEEEEEC
T ss_pred CCCCcEeEEEEecC----CCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEe
Confidence 44567888876541 124789999999999999998 9999999999999999777888888887788999999999
Q ss_pred CCeEEEEEEEe
Q 012727 300 GAEIRHLALTR 310 (457)
Q Consensus 300 ~g~~~~vtl~r 310 (457)
+++..+++++.
T Consensus 93 ~g~~~~~~~~~ 103 (127)
T 1b8q_A 93 GPEGFTTHLET 103 (127)
T ss_dssp CCCSEEECCCC
T ss_pred CCceEEEEEEE
Confidence 99877776654
No 54
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.94 E-value=5.4e-10 Score=96.06 Aligned_cols=82 Identities=21% Similarity=0.294 Sum_probs=65.7
Q ss_pred CCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 220 QGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 220 ~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.+.+.++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.+ ..++...+...+|+.+.|+|.
T Consensus 28 ~~~~~~lG~~~~~~~~~-~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~v~l~v~ 104 (124)
T 1wh1_A 28 MNSQDKLGLTVCYRTDD-EDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKNFSLLIA 104 (124)
T ss_dssp SSTTCCCCEEEECCCCC-SSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCSCCEEEE
T ss_pred cCCCCcccEEEEecCCC-CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCEEEEEEE
Confidence 34456789888654211 113579999999999999999 99999999999999986 478888888767899999999
Q ss_pred eCCeEE
Q 012727 299 SGAEIR 304 (457)
Q Consensus 299 r~g~~~ 304 (457)
|+++.+
T Consensus 105 R~g~~~ 110 (124)
T 1wh1_A 105 RPELQL 110 (124)
T ss_dssp ECSSCC
T ss_pred ECCEEe
Confidence 988643
No 55
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A
Probab=98.93 E-value=2.4e-10 Score=97.87 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=61.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.........+.+++|..|.++|||+++ ||++||+|++|||+++.+++..++...++. .+.+++|+|.|+++
T Consensus 36 ~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~-~~~~v~l~v~r~g~ 114 (120)
T 2iwo_A 36 DSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKN-ASGSIEMQVVAGGD 114 (120)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHH-CCSEEEEEEECCTT
T ss_pred CCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCc
Confidence 4788877542110001236889999999999999 999999999999999999888888887765 46679999998875
Q ss_pred EE
Q 012727 303 IR 304 (457)
Q Consensus 303 ~~ 304 (457)
..
T Consensus 115 ~~ 116 (120)
T 2iwo_A 115 VS 116 (120)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 56
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Probab=98.93 E-value=1.3e-09 Score=89.25 Aligned_cols=78 Identities=18% Similarity=0.337 Sum_probs=60.5
Q ss_pred eeeeEEEeecCCCC---CCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGYPTASD---GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~~---~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.. +|+.++|++.|
T Consensus 17 ~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~R 95 (98)
T 1ihj_A 17 KSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE-ADFKIELEIQT 95 (98)
T ss_dssp SSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 46888774321100 012378999999999999999 99999999999999999877777777765 78999999998
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
+++
T Consensus 96 ~g~ 98 (98)
T 1ihj_A 96 FDK 98 (98)
T ss_dssp C--
T ss_pred CCC
Confidence 763
No 57
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}
Probab=98.93 E-value=4.5e-10 Score=91.46 Aligned_cols=69 Identities=22% Similarity=0.319 Sum_probs=59.7
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCCeEEEEEEEeecc
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREKV 313 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g~~~~vtl~r~~~ 313 (457)
+++|..|.++|||++ ||++||+|++|||+++.++ .++...+... +|++++|++.|+|+.++++++....
T Consensus 2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 71 (91)
T 2kjp_A 2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQSA--EKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQF 71 (91)
T ss_dssp CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSSH--HHHHHHHSSCCSSCEECEEEESSSCEECCCEECCCC
T ss_pred ceEEEEECCCChHHH-cCCCCCEEEEECCEECCCH--HHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEEecc
Confidence 567889999999999 9999999999999999875 6777777765 7999999999999988888876543
No 58
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0
Probab=98.93 E-value=7.5e-10 Score=92.20 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=54.8
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
..+++|..|.++|||+++||++||+|++|||+++.++...++...++ ..|+.++|++.|+++
T Consensus 25 ~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 86 (106)
T 3ngh_A 25 TDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVR-KSGNSVTLLVLDGDS 86 (106)
T ss_dssp CCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHH-HTTTEEEEEEECHHH
T ss_pred CCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCEEEEEEEECCe
Confidence 35789999999999999999999999999999999987778877776 578899999988664
No 59
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.92 E-value=6.6e-10 Score=95.99 Aligned_cols=79 Identities=28% Similarity=0.400 Sum_probs=64.5
Q ss_pred eeeeeEEEeecCCCC--CCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 223 LTGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 223 ~~glGi~~~~~~~~~--~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
..++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.+.|+|.|
T Consensus 26 ~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 104 (129)
T 2dmz_A 26 GQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN-AGQVVHLTLVR 104 (129)
T ss_dssp TCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH-CCSSEEEEEEE
T ss_pred CCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 456888875421110 124579999999999999999 99999999999999999888888888876 88999999988
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
+++
T Consensus 105 ~~~ 107 (129)
T 2dmz_A 105 RKT 107 (129)
T ss_dssp ESS
T ss_pred CCc
Confidence 775
No 60
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=87.87 Aligned_cols=80 Identities=28% Similarity=0.373 Sum_probs=63.1
Q ss_pred ceeeeeEEEeecCCC-CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 222 ALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 222 ~~~glGi~~~~~~~~-~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
...++|+.+...... ...+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.+.|++.|
T Consensus 13 ~~~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 91 (97)
T 2iwn_A 13 NVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRH-TGQTVLLTLMR 91 (97)
T ss_dssp BTTBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCCCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEe
Confidence 345788887643110 0124579999999999999999 99999999999999999877787777765 78899999987
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
+++
T Consensus 92 ~g~ 94 (97)
T 2iwn_A 92 RGE 94 (97)
T ss_dssp EEE
T ss_pred CCC
Confidence 653
No 61
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}
Probab=98.91 E-value=3.3e-09 Score=89.28 Aligned_cols=71 Identities=21% Similarity=0.187 Sum_probs=59.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+... .+++|..|.++|||++|||++||+|++|||+++..++.+++.+.++...++.++|+|.|..
T Consensus 34 ~~~G~~l~~~-------~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~V~~~~ 104 (109)
T 2vsv_A 34 GDLGFTLRGN-------APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104 (109)
T ss_dssp GCCCEEEESS-------SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEEEESCC
T ss_pred CceeEEEeCC-------CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEECC
Confidence 4578776432 4678999999999999999999999999999999887788888887666666999887654
No 62
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}
Probab=98.91 E-value=4e-09 Score=84.07 Aligned_cols=73 Identities=25% Similarity=0.332 Sum_probs=58.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r 299 (457)
.|+|+.+.... ....+++|..|.++|||+++| |++||+|++|||+++.+++..++.+.++.. +|+.+++++.|
T Consensus 11 ~g~G~~i~~~~---~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 85 (85)
T 2i04_A 11 RGFGFTVVGGD---EPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCR 85 (85)
T ss_dssp TBSSEEEEECC---STTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEEEEEEC
T ss_pred CCCCEEEEccc---CCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEC
Confidence 46888875421 113458999999999999999 999999999999999988778888777754 48888888764
No 63
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}
Probab=98.91 E-value=2e-09 Score=88.04 Aligned_cols=71 Identities=23% Similarity=0.311 Sum_probs=60.3
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCCeEEEEEEEeecc
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGAEIRHLALTREKV 313 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g~~~~vtl~r~~~ 313 (457)
..+++|..|.++|||++ ||++||+|++|||+++.++ .++...+... +|+.++|++.|+|+.++++++....
T Consensus 4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~~ 75 (94)
T 2kl1_A 4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPF 75 (94)
T ss_dssp CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETTEEEEEEECCCBC
T ss_pred CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECCEEEEEEEEEeeC
Confidence 35789999999999999 9999999999999999875 6666666543 7999999999999998888876543
No 64
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}
Probab=98.91 E-value=3.4e-09 Score=85.65 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=50.9
Q ss_pred ceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEE
Q 012727 242 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl 308 (457)
+++|..|.++|||+++| |++||+|++|||+++.+++..++...+... +..+.+++.|+++..++++
T Consensus 24 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~g~~~~~~v 90 (92)
T 3cyy_A 24 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRDERATLLNV 90 (92)
T ss_dssp EEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTT-TTEEEEEEEC---------
T ss_pred CEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCcEEEEEEeCCceeeeeC
Confidence 78999999999999999 999999999999999977678888777753 4589999999887766554
No 65
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A
Probab=98.90 E-value=2.7e-09 Score=85.01 Aligned_cols=74 Identities=20% Similarity=0.347 Sum_probs=59.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+..... ...+++|..|.++|||+++||++||+|++|||+++.+++..++...+.. .++.++|++.|++
T Consensus 11 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 84 (85)
T 1rgw_A 11 GPWGFRLQGGKD---FNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKS-ASYNLSLTLQKSK 84 (85)
T ss_dssp SCCCEEECCCGG---GTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTT-CSSCEEEEEESCC
T ss_pred CccCEEEEeccC---CCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHc-CCCeEEEEEEeCC
Confidence 357887743211 1346899999999999999999999999999999999877788777754 4667999998875
No 66
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.90 E-value=1.9e-09 Score=93.47 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=64.1
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
..|+|+.+...........+++|..|.++|||+++ ||++||+|++|||+++..++.+++.+.++...+..+.|+|.|++
T Consensus 39 ~~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~r~~ 118 (130)
T 1i16_A 39 SAGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVIRRKS 118 (130)
T ss_dssp SSSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCSSEEEEEEEEES
T ss_pred CCccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEeCC
Confidence 46799988643210001346899999999999999 99999999999999999988899999998777778999987754
No 67
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A
Probab=98.90 E-value=3.3e-09 Score=88.34 Aligned_cols=78 Identities=31% Similarity=0.423 Sum_probs=62.2
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.+.|++.|+++
T Consensus 21 ~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~~ 99 (106)
T 3axa_A 21 NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTR-TSSVVTLEVAKQGA 99 (106)
T ss_dssp SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEECCCS
T ss_pred CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46788775321111124579999999999999999 99999999999999998777787777764 78899999988775
No 68
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=98.90 E-value=3.8e-09 Score=95.09 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=66.2
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
..++|+.+... +.+++|..|.++|||++|||++||+|++|||+++.++........++...|++++|+++++++
T Consensus 15 ~~~lG~~~~~~------~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~vr~~~~ 88 (166)
T 1w9e_A 15 DGKIGLRLKSI------DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPF 88 (166)
T ss_dssp TSCCSEEEEEE------TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEECCTT
T ss_pred CCcEeEEEEeC------CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEcCCC
Confidence 45688887654 468999999999999999999999999999999999864344455555678899999965557
Q ss_pred EEEEEEEe
Q 012727 303 IRHLALTR 310 (457)
Q Consensus 303 ~~~vtl~r 310 (457)
.++++++.
T Consensus 89 ~~~v~l~~ 96 (166)
T 1w9e_A 89 ERTITMHK 96 (166)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 77777764
No 69
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}
Probab=98.90 E-value=3.4e-09 Score=86.39 Aligned_cols=74 Identities=26% Similarity=0.369 Sum_probs=60.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+.+..++...+. ..|+.++|++.|+++
T Consensus 16 ~~lG~~~~~~~----~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~~ 90 (95)
T 2vwr_A 16 EQLGIKLVRRT----DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTIARPGK 90 (95)
T ss_dssp CCCCEEEEECS----SSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEEEESC
T ss_pred CcccEEEEecc----CCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCc
Confidence 46788775431 13579999999999999999 9999999999999999877677766665 358899999988664
No 70
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.89 E-value=1.5e-09 Score=89.67 Aligned_cols=77 Identities=29% Similarity=0.396 Sum_probs=60.7
Q ss_pred CceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
+...++|+.+.... ..+.+++|..|.++|||+++||++||+|++|||+++..+...++...++ .++.+.|+|.|+
T Consensus 18 ~~~~~lG~~~~~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~--~~~~v~l~v~R~ 92 (101)
T 1uez_A 18 KAHEGLGFSIRGGS---EHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK--GSKKLVLSVYSA 92 (101)
T ss_dssp CTTTCSSEEEEECT---TTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS--SSSSCCEEECCC
T ss_pred CCCCcccEEEeCCC---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc--CCCeEEEEEEEC
Confidence 34567899886442 1235799999999999999999999999999999999987656655553 456888999887
Q ss_pred Ce
Q 012727 301 AE 302 (457)
Q Consensus 301 g~ 302 (457)
++
T Consensus 93 g~ 94 (101)
T 1uez_A 93 GR 94 (101)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 71
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*
Probab=98.89 E-value=2.4e-09 Score=87.08 Aligned_cols=73 Identities=23% Similarity=0.417 Sum_probs=58.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+..... ..+++|..|.++|||+++||++||+|++|||+++..++..++...++. .+..+.+.+.|.+
T Consensus 16 ~~~G~~l~~~~~----~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~~~~~~~r~~ 88 (95)
T 3r68_A 16 NGYGFYLRAGPE----QKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKE 88 (95)
T ss_dssp TBCSCEEEEC------CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHT-TTTEEEEEEEECC
T ss_pred CcccEEEEecCC----CCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEECCc
Confidence 467887764411 237899999999999999999999999999999999988888888876 5667777765544
No 72
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.89 E-value=5.9e-09 Score=85.87 Aligned_cols=73 Identities=27% Similarity=0.357 Sum_probs=60.8
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.+|+.+.... ..+.+++|..|.++|||+++||++||+|++|||+++.++.+.++...++. ++.+.|++.|+++
T Consensus 23 ~lG~~~~~~~---~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~--~~~v~l~v~R~g~ 95 (100)
T 2eeh_A 23 RLGFSVRGGS---EHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS--SSRLHMMVRRMGS 95 (100)
T ss_dssp SCSEEEECCT---TTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS--CSSEEEEEEECSC
T ss_pred CccEEEEccc---cCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC--CCEEEEEEEECCc
Confidence 4788775431 12357999999999999999999999999999999999877788777764 7899999998875
No 73
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=98.88 E-value=4.6e-10 Score=115.00 Aligned_cols=147 Identities=18% Similarity=0.284 Sum_probs=100.1
Q ss_pred hHHHHHHHHHHHHHcCCC-CCCCCChHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCCCccccChhhhhhhhcccCCce
Q 012727 145 NRLFLEAWRTIDRAYVDK-TFNGQSWFRYRENALRNEPMNTREETYMAIRKMLATLDDPFTRFLEPEKFNSLRSGTQGAL 223 (457)
Q Consensus 145 ~~~fd~v~r~l~~~Y~d~-~~~g~dw~~~~~~~~~~~~~~~~~ef~~ai~~~l~~L~DpHt~~l~~~~~~~~~~~~~~~~ 223 (457)
...+.++|+..++.|.+. .+...+| .+.-|..+.++...++|+++.|..++..+....... .-
T Consensus 152 ~~ti~qaf~~~y~~~l~~~gi~~~~~---------------~~~~y~~~~~~~~~~~d~~~~~~~~~~~~~V~i~k~-~g 215 (388)
T 3suz_A 152 AQSIGQAFSVAYQEFLRANGINPEDL---------------SQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKH-KG 215 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTS---------------CHHHHHHHHHHHHHHHHHHHHTCCSSCCEEEEECCC-SS
T ss_pred HHHHHHHHHHHhhhhccccCcCcccc---------------chhhhcccccccccccchhhhhcccccceEEEEECC-CC
Confidence 346788999888888642 1222222 245567777778888888888888777655432222 12
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g 301 (457)
.++|+.+.... ......+++|..|.+||||+++| |++||+|++|||+++.+++..++...++.. .+..++|++.|++
T Consensus 216 e~lG~~i~~~~-~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~~~v~l~v~r~~ 294 (388)
T 3suz_A 216 EILGVVVVESG-WGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCP 294 (388)
T ss_dssp CCCCCCCBCC----CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTCSCEEEEEEECC
T ss_pred CceeEEEEecC-CCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCCCcccccccccc
Confidence 34666554321 00011247899999999999999 999999999999999998767777777765 5678999999887
Q ss_pred eEEEEEE
Q 012727 302 EIRHLAL 308 (457)
Q Consensus 302 ~~~~vtl 308 (457)
...++++
T Consensus 295 ~~~~v~l 301 (388)
T 3suz_A 295 PVTTVLI 301 (388)
T ss_dssp SCC----
T ss_pred ccceeeE
Confidence 6655555
No 74
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A
Probab=98.88 E-value=4.2e-09 Score=86.81 Aligned_cols=78 Identities=26% Similarity=0.393 Sum_probs=62.0
Q ss_pred eeeeEEEeecCCCC--CCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~--~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+....... ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.++|+|.|+
T Consensus 18 ~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 96 (101)
T 2jik_A 18 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 96 (101)
T ss_dssp TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeC
Confidence 57888886531110 013579999999999999999 99999999999999999877788777764 578899999876
Q ss_pred Ce
Q 012727 301 AE 302 (457)
Q Consensus 301 g~ 302 (457)
++
T Consensus 97 ~~ 98 (101)
T 2jik_A 97 LE 98 (101)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 75
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.88 E-value=2.3e-09 Score=88.61 Aligned_cols=74 Identities=23% Similarity=0.412 Sum_probs=61.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..++...++. .|+.+.|++.|++.
T Consensus 17 ~g~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~r~~~ 90 (102)
T 2d90_A 17 NGYGFYLRAGP----EQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRK-GGDQTTLLVLDKEA 90 (102)
T ss_dssp SSSSCEEEECS----SSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHH-STTEEEEEECSTTC
T ss_pred CCccEEEEeec----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEECCC
Confidence 46888876431 1357999999999999999999999999999999999877787777764 58899999977654
No 76
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1
Probab=98.87 E-value=6.7e-09 Score=83.82 Aligned_cols=72 Identities=18% Similarity=0.335 Sum_probs=57.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.++...++...+. ..|+.+.|++.|+
T Consensus 19 ~~~G~~~~~~~----~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~ 90 (91)
T 1m5z_A 19 EDFGFSVADGL----LEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIA-ESGNKLDLVISRN 90 (91)
T ss_dssp SSSSEEEEECT----TSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-TSTTEEEEEEEEC
T ss_pred CCccEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEeC
Confidence 35777765431 135799999999999999999999999999999999987666666665 3588899998775
No 77
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=2.7e-09 Score=89.62 Aligned_cols=78 Identities=22% Similarity=0.355 Sum_probs=63.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC---CCcEEEEEEe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~---G~~v~L~v~r 299 (457)
.|+|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++..++.+++.++++... +..++|++.|
T Consensus 25 ~glG~~i~gg~~~-~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r~~~~~~l~v~R 103 (109)
T 1wi4_A 25 TGLGLKILGGINR-NEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103 (109)
T ss_dssp SCCCEEEEECSSS-SSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCSSSSCEEEEEEC
T ss_pred CccCEEEEeccCC-CCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccCCCceEEEEEEe
Confidence 5789988642111 012368999999999999999 9999999999999999988889988887766 8889999988
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
+++
T Consensus 104 ~~~ 106 (109)
T 1wi4_A 104 SGP 106 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 753
No 78
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Probab=98.87 E-value=4.5e-09 Score=86.85 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=52.5
Q ss_pred CceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++.. +..++|++.|.++
T Consensus 39 ~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 100 (103)
T 2fcf_A 39 RGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA-GNPVVFMVQSIIS 100 (103)
T ss_dssp --EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC-CSSEEEEEECCCC
T ss_pred CCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCcEEEEEEECCC
Confidence 479999999999999999 999999999999999997778888888765 4489999987653
No 79
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A
Probab=98.87 E-value=3.4e-09 Score=91.19 Aligned_cols=74 Identities=23% Similarity=0.396 Sum_probs=60.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.... +.+++|..|.++|||++|||++||+|++|||+++.+++..++...+.. .+|+.++|++.|+++
T Consensus 39 ~~lG~~l~~~~-----~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~ 113 (124)
T 3tsv_A 39 DSVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKKD 113 (124)
T ss_dssp SCCCEEEEECT-----TSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEEEEECHH
T ss_pred CceeEEEecCC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECCc
Confidence 35788775421 358999999999999999999999999999999999877777775543 688899999988654
No 80
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.87 E-value=2.1e-09 Score=92.92 Aligned_cols=74 Identities=19% Similarity=0.300 Sum_probs=62.3
Q ss_pred CceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEE
Q 012727 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVR 298 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~ 298 (457)
+.+.|+|+.+... +..++|..|.++|||++|| |++||+|++|||+++.+.+..++...++. ++|+.++|+|.
T Consensus 35 k~~~glG~~i~~~------~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v~l~V~ 108 (126)
T 1wif_A 35 VGNLGLGLVVIQN------GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIKAY 108 (126)
T ss_dssp CCTTCCCCCEEEE------TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEEEEEEE
T ss_pred cCCceEeEEEEcC------CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEEEEEEE
Confidence 3446788776543 3568899999999999999 99999999999999987667899888886 57899999998
Q ss_pred eC
Q 012727 299 SG 300 (457)
Q Consensus 299 r~ 300 (457)
|+
T Consensus 109 R~ 110 (126)
T 1wif_A 109 RG 110 (126)
T ss_dssp SS
T ss_pred EC
Confidence 86
No 81
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Probab=98.86 E-value=7.5e-09 Score=84.00 Aligned_cols=77 Identities=23% Similarity=0.374 Sum_probs=60.1
Q ss_pred eeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+....+. ...+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .+..++|++.|+
T Consensus 14 ~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 92 (94)
T 2fe5_A 14 KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKN-TSDMVYLKVAKP 92 (94)
T ss_dssp TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHT-CCSEEEEEEECC
T ss_pred CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEcC
Confidence 3688887532110 1123579999999999999999 99999999999999999877777777764 456899999887
Q ss_pred C
Q 012727 301 A 301 (457)
Q Consensus 301 g 301 (457)
+
T Consensus 93 g 93 (94)
T 2fe5_A 93 G 93 (94)
T ss_dssp C
T ss_pred C
Confidence 5
No 82
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.86 E-value=7e-09 Score=86.89 Aligned_cols=80 Identities=23% Similarity=0.402 Sum_probs=63.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+...........+++|..|.++|||+++| |++||+|++|||+++...+..++...++. .++.++|++.|+++
T Consensus 19 ~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 97 (110)
T 1um1_A 19 SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRH-GGKKMRFLVAKSDV 97 (110)
T ss_dssp TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHT-CCSEEEEEEECCCH
T ss_pred CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46888876432111123579999999999999999 99999999999999998777777777765 58899999998876
Q ss_pred EE
Q 012727 303 IR 304 (457)
Q Consensus 303 ~~ 304 (457)
..
T Consensus 98 ~~ 99 (110)
T 1um1_A 98 ET 99 (110)
T ss_dssp HH
T ss_pred ce
Confidence 43
No 83
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Probab=98.86 E-value=2.3e-09 Score=88.61 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=62.6
Q ss_pred eeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+...... ...+.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.+.|++.|+
T Consensus 15 ~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 93 (102)
T 2i1n_A 15 SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE-AGPVVRLVVRRR 93 (102)
T ss_dssp TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHH-SCSEEEEEEEEE
T ss_pred CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 4688887642110 0123589999999999999999 99999999999999998877777777764 688999999887
Q ss_pred CeE
Q 012727 301 AEI 303 (457)
Q Consensus 301 g~~ 303 (457)
++.
T Consensus 94 ~~~ 96 (102)
T 2i1n_A 94 QPP 96 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 84
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=2.8e-09 Score=86.82 Aligned_cols=74 Identities=31% Similarity=0.360 Sum_probs=59.4
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.+++..++...+.. .|+.+.|++.|+++
T Consensus 19 ~~G~~l~gg~---~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~ 92 (94)
T 2eeg_A 19 PWGFRLVGGR---DFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKG-CHDHLTLSVSSGPS 92 (94)
T ss_dssp CCSCCEECCT---TTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHT-CCSCEEEEEECCSS
T ss_pred ccCEEEECcc---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 4677664321 11346899999999999999999999999999999999877777777765 68899999988764
No 85
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Probab=98.86 E-value=3.1e-09 Score=90.52 Aligned_cols=79 Identities=28% Similarity=0.328 Sum_probs=61.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+.........+.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .+.+++|+|.|+++
T Consensus 36 ~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~g~ 114 (117)
T 2fne_A 36 DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKR-TKGTVTLMVLSSDE 114 (117)
T ss_dssp TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEEEECSC
T ss_pred CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCc
Confidence 46888875321100012368999999999999999 99999999999999998777888887764 44579999998876
Q ss_pred E
Q 012727 303 I 303 (457)
Q Consensus 303 ~ 303 (457)
.
T Consensus 115 ~ 115 (117)
T 2fne_A 115 T 115 (117)
T ss_dssp E
T ss_pred c
Confidence 3
No 86
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}
Probab=98.86 E-value=5.5e-09 Score=84.52 Aligned_cols=73 Identities=27% Similarity=0.363 Sum_probs=59.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .++.++|++.|.+
T Consensus 16 ~~lG~~~~~~~----~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~ 89 (92)
T 2qg1_A 16 KGLGLSIVGKR----NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKC-SLGTVTLEVGRIS 89 (92)
T ss_dssp SCCSEEEECCS----SSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEECCC
T ss_pred CcccEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEccc
Confidence 46888875431 13589999999999999999 99999999999999998776777666653 5778999998765
No 87
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}
Probab=98.86 E-value=2.3e-09 Score=85.10 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=57.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+.. +.+++|..|.++|||+++||++||+|++|||+++.+++..++...+.. .++.++|++.|+
T Consensus 13 ~g~G~~~~~-------~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 81 (83)
T 2kv8_A 13 AGYGFTLSG-------QAPCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGK-CSGVLHMVIAEG 81 (83)
T ss_dssp SCCSCBCCC-------SSSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSSCEEEEEECC
T ss_pred CcccEEEEc-------CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcC
Confidence 457776533 246889999999999999999999999999999999887888877764 457799998875
No 88
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=98.85 E-value=4.6e-09 Score=86.23 Aligned_cols=60 Identities=30% Similarity=0.372 Sum_probs=53.7
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
+++|..|.++|||+++||++||+|++|||+++.+++..++...++ ..|+.++|++.|+++
T Consensus 35 g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 94 (99)
T 3khf_A 35 HHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLL-KSGNKISLRTTALEN 94 (99)
T ss_dssp EEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEEECSCS
T ss_pred CeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh-cCCCEEEEEEEECCC
Confidence 458999999999999999999999999999999877788887776 678999999998764
No 89
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.85 E-value=6.1e-10 Score=92.41 Aligned_cols=82 Identities=21% Similarity=0.295 Sum_probs=62.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
.++|+.+.... ..+..++|..|.++|||+++||++||+|++|||+++.++...++...+.. .++.++|++.|+++.
T Consensus 15 ~~~G~~l~gg~---~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~g~~ 90 (103)
T 1wf7_A 15 APWGFRLQGGK---DFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKA-CTGSLNMTLQRASAA 90 (103)
T ss_dssp SCCSCCEEEET---TTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHH-CSSEEEEEECCCSCC
T ss_pred CccCEEEeccc---cCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCCc
Confidence 34676664321 01235789999999999999999999999999999999876777666654 478999999998876
Q ss_pred EEEEEE
Q 012727 304 RHLALT 309 (457)
Q Consensus 304 ~~vtl~ 309 (457)
.+++++
T Consensus 91 ~~~~v~ 96 (103)
T 1wf7_A 91 AKSEPV 96 (103)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 554443
No 90
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.85 E-value=7e-10 Score=91.64 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=58.7
Q ss_pred CceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
+...++|+.+... .+++|..|.++|||+++||++||+|++|||+++..++..++...++.. +.+++|+|.|+
T Consensus 23 ~~~~g~G~~~~~~-------~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~ 94 (100)
T 1whd_A 23 RGKDGFGFTICCD-------SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSC-PSEIILLVWRV 94 (100)
T ss_dssp CCSSSSSCBCCCS-------SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred CCCCeeeEEEeCC-------CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 3345677765432 468899999999999999999999999999999988778888777653 45688988876
Q ss_pred C
Q 012727 301 A 301 (457)
Q Consensus 301 g 301 (457)
+
T Consensus 95 ~ 95 (100)
T 1whd_A 95 S 95 (100)
T ss_dssp C
T ss_pred C
Confidence 4
No 91
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.85 E-value=9e-09 Score=88.20 Aligned_cols=76 Identities=29% Similarity=0.371 Sum_probs=63.0
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSG 300 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~ 300 (457)
..|+|+.+.... ..+.+++|..|.++|||+++| |++||+|++|||+++..++..++.+.++.. .|+.++|+|.|+
T Consensus 29 ~~glG~~~~~g~---~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 105 (123)
T 1ueq_A 29 NMGFGFTIIGGD---EPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105 (123)
T ss_dssp TTSCSEEEECCS---SSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEEEEEEES
T ss_pred CCceeEEEeccc---CCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 357888875321 123469999999999999999 999999999999999988788888888765 489999999887
Q ss_pred C
Q 012727 301 A 301 (457)
Q Consensus 301 g 301 (457)
+
T Consensus 106 ~ 106 (123)
T 1ueq_A 106 Y 106 (123)
T ss_dssp C
T ss_pred C
Confidence 6
No 92
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}
Probab=98.85 E-value=5.1e-10 Score=94.98 Aligned_cols=79 Identities=25% Similarity=0.344 Sum_probs=60.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecC-CCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTE-SMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~-~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++. ..+..++...++. .|+.++|++.|++
T Consensus 32 ~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 110 (117)
T 2o2t_A 32 GGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQK-AKDTVQLVIARGS 110 (117)
T ss_dssp SCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHH-CCSEEEEEEESSC
T ss_pred CCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHc-CCCEEEEEEEeCC
Confidence 35666654321111113478999999999999999 9999999999999998 7777888877765 6889999999887
Q ss_pred eE
Q 012727 302 EI 303 (457)
Q Consensus 302 ~~ 303 (457)
+.
T Consensus 111 ~~ 112 (117)
T 2o2t_A 111 LP 112 (117)
T ss_dssp CG
T ss_pred cc
Confidence 64
No 93
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4
Probab=98.84 E-value=6.4e-09 Score=87.56 Aligned_cols=69 Identities=33% Similarity=0.513 Sum_probs=59.6
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
.++++|..|.++|||+++||++||+|++|||+++.++ .++...+.. |+.+.+++.|+++.++++++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~--~~~v~l~v~R~g~~~~~~v~~~~ 102 (113)
T 2pzd_A 34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRETLTLYVTPEV 102 (113)
T ss_dssp SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHH--CSSEEEEEEETTEEEEEEECCEE
T ss_pred CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEEee
Confidence 3579999999999999999999999999999999864 677666653 68999999999998888887654
No 94
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A
Probab=98.84 E-value=3e-09 Score=85.94 Aligned_cols=67 Identities=19% Similarity=0.274 Sum_probs=57.2
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEe
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
.++|..|.++|||+++||++||+|++|||+++.++ .++...+....|+.+.+++.|+|+.++++++.
T Consensus 5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g~~~~~~v~~ 71 (91)
T 2zpm_A 5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQGSPLSLTLIP 71 (91)
T ss_dssp -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETTEEEEEEECC
T ss_pred CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECCeEEEEEEEE
Confidence 35688999999999999999999999999999875 67766666567889999999999888877764
No 95
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}
Probab=98.84 E-value=8.4e-10 Score=93.05 Aligned_cols=80 Identities=25% Similarity=0.289 Sum_probs=62.3
Q ss_pred eeeeEEEee---cCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~---~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.|+|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.++|++.|
T Consensus 15 ~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R 93 (113)
T 2g5m_B 15 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 93 (113)
T ss_dssp SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH-SCSSCEEEEEE
T ss_pred CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 467777654 11111124578999999999999999 99999999999999998777777776764 48899999998
Q ss_pred CCeEE
Q 012727 300 GAEIR 304 (457)
Q Consensus 300 ~g~~~ 304 (457)
+++..
T Consensus 94 ~~~~~ 98 (113)
T 2g5m_B 94 ERPGE 98 (113)
T ss_dssp CCCCT
T ss_pred CCCCC
Confidence 87643
No 96
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}
Probab=98.84 E-value=6.1e-09 Score=86.05 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=59.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~-AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~ 300 (457)
.++|+.+..... .....+++|..|.++|||++ +||++||+|++|||+++.+.+.+++.+.++.. .|+.++|++.|.
T Consensus 21 ~~lG~~i~~~~~-~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~ 98 (101)
T 2yt7_A 21 EGLGVALVESGW-GSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98 (101)
T ss_dssp CCCCEEEEECCC-SSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CccCEEEEeCCC-CCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeC
Confidence 468888854310 00011589999999999999 67999999999999999777778888888764 788999988663
No 97
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.84 E-value=4.6e-09 Score=84.47 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=53.4
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEE
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 309 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~ 309 (457)
++.|..+.++|||+++||++||+|++|||+++.++ .++...+.. .+|+.+++++.|+|+..+++++
T Consensus 20 G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 86 (87)
T 2i6v_A 20 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 86 (87)
T ss_dssp EEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEE
Confidence 45677777778889999999999999999999986 555555543 3688999999999988777664
No 98
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A
Probab=98.84 E-value=3.8e-09 Score=87.05 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=57.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+.... +++++|..|.++|||+++| |++||+|++|||+++.+++.+++.+.++.. +++++|+|.+.
T Consensus 24 ~~lG~~l~~~~-----~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~-~~~v~L~V~~~ 95 (97)
T 2ejy_A 24 EPMGICLKLNE-----KQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVIPN 95 (97)
T ss_dssp SCCSEEEEECT-----TCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHC-CEEEEEEEECC
T ss_pred CCeeEEEEeCC-----CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEEC
Confidence 45788876531 3589999999999999999 999999999999999986668888888753 56788877653
No 99
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.84 E-value=2.2e-09 Score=87.45 Aligned_cols=76 Identities=24% Similarity=0.335 Sum_probs=60.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
.++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.+++..++...++... +.++|++.|+++.
T Consensus 16 ~~lG~~l~~g~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g~~ 91 (94)
T 1vb7_A 16 APWGFRISGGR---DFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSA-SPLRLQLDRSSGP 91 (94)
T ss_dssp SCCSBCCEEET---TTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCC-SSEEEEEECCCCC
T ss_pred CCccEEEeccc---CCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CcEEEEEEECCcC
Confidence 35677664321 1134689999999999999999999999999999999987788888887554 8999999998753
No 100
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.83 E-value=5.7e-09 Score=85.56 Aligned_cols=74 Identities=20% Similarity=0.364 Sum_probs=61.2
Q ss_pred CceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEe
Q 012727 221 GALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRS 299 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r 299 (457)
+...|+|+.+... ..+++|..|.+ +|+++||++||+|++|||+++.+++.+++.+.++.. .|+.++|+|.|
T Consensus 18 ~~~~g~G~~i~~~------~~Gv~V~~v~~--~a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R 89 (96)
T 1ujv_A 18 KGAQGFGFTIADS------PTGQRVKQILD--IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETSLIIHR 89 (96)
T ss_dssp CCSSSSSEEEEEE------TTEEEEEEESC--GGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEEEEEEC
T ss_pred eCCCceeEEEEcC------CCCEEEEEEec--ccccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEE
Confidence 3456789988643 34788999988 378999999999999999999998888888888765 48999999998
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
+++
T Consensus 90 ~g~ 92 (96)
T 1ujv_A 90 GSG 92 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 101
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}
Probab=98.83 E-value=6e-10 Score=96.00 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=69.1
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
..|+|+.+.... ..++++|..|.++|||+++||++||+|++|||.++.+++..++...+....++.+.+++.|+++
T Consensus 19 ~~g~G~~l~~~~----~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~g~ 94 (128)
T 2kjd_A 19 PSGYGFNLHSDK----SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKLLVVDRETD 94 (128)
T ss_dssp SSSCCEEEEECS----SSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEEEEECHHHH
T ss_pred CCcccEEEEecC----CCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEEEEEEeCCc
Confidence 357888886542 1347999999999999999999999999999999999777888888887777888899988876
Q ss_pred EEE--EEEEee
Q 012727 303 IRH--LALTRE 311 (457)
Q Consensus 303 ~~~--vtl~r~ 311 (457)
..+ +++++.
T Consensus 95 ~~~~~~~l~~~ 105 (128)
T 2kjd_A 95 EFFKKCRVIPS 105 (128)
T ss_dssp HHHHHHTCCCC
T ss_pred ceEEEEEEEec
Confidence 554 555544
No 102
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.83 E-value=9.6e-09 Score=95.34 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=73.7
Q ss_pred cCCCCccccChhhhhhhhcccCCceeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCC--
Q 012727 199 LDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTES-- 275 (457)
Q Consensus 199 L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~-- 275 (457)
..|||+.++.+.+....... ....++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.+
T Consensus 6 ~~dp~~~~~~~~~~~~v~~~--~~~~~lG~~i~~g~~~-~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~ 82 (206)
T 3r0h_A 6 PQEPATAEIKPNKKILIELK--VEKKPMGVIVCGGKNN-HVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGS 82 (206)
T ss_dssp --CTTTCCCCTTSCEEEEEE--CTTSCCCEEEECCSSS-SCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGG
T ss_pred CCCCCcCCCCCCCEEEEEEE--eCCCCcCEEEecccCC-CCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCc
Confidence 46899999988764433221 2235788887542211 122478999999999999998 99999999999999999
Q ss_pred CCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 276 MGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 276 ~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
++..++...++...+..+.|++.|+++.
T Consensus 83 ~~~~~~~~~~~~~~~~~v~l~v~R~~~~ 110 (206)
T 3r0h_A 83 MTTLKVHQLFHTTYEKAVTLTVFRADPP 110 (206)
T ss_dssp SCHHHHHHHHHSCCSSEEEEEEECCSSC
T ss_pred cCHHHHHHHHHhcCCCceEEEEEecccC
Confidence 6667777777654444499999987653
No 103
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.83 E-value=6.2e-09 Score=86.43 Aligned_cols=74 Identities=26% Similarity=0.410 Sum_probs=60.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.... ..+.+++|..|.++|||+++||++||+|++|||+++..++..++.+.++. ++.+.|+|.|+..
T Consensus 27 ~~lG~~~~~~~---~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~--~~~v~l~v~r~~~ 100 (104)
T 1wi2_A 27 AQLGFNIRGGK---ASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT--AREISMRVRFFSG 100 (104)
T ss_dssp CCCSEEEECCS---SSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH--SSSEEEEEECCCC
T ss_pred CCccEEEEccc---CCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC--CCEEEEEEEECCC
Confidence 46788775431 11357999999999999999999999999999999999777888888875 7889999987643
No 104
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}
Probab=98.83 E-value=3.9e-09 Score=87.26 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=57.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC--CCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG--PEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~--~~G~~v~L~v~ 298 (457)
.|+|+.+... +.+.+|.+|.+||||++|||++||+|++|||.++...+.+++...+.. +.|+.+.|.|.
T Consensus 28 ~g~G~~l~~~------~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~LLV~ 98 (101)
T 3qik_A 28 EDYGFDIEEK------NKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRLLVA 98 (101)
T ss_dssp SSSSEEEEEE------TTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcccEEEEcc------CCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEEEEe
Confidence 4578887654 457889999999999999999999999999999965556888777765 46888988874
No 105
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.83 E-value=6.2e-09 Score=87.86 Aligned_cols=71 Identities=14% Similarity=0.324 Sum_probs=60.4
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCC-CCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGI-LSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL-~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
++|+.+... ..+++|..|.++|||+++|+ ++||+|++|||+++.+++.+++...++.. +.++.|++.|+++
T Consensus 38 ~lG~~i~~~------~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~r~~~ 109 (113)
T 1va8_A 38 PLGATVRNE------MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVLIPSSG 109 (113)
T ss_dssp CCCEEEEEC------SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHC-CEEEEEEEECCCC
T ss_pred ceeEEEEeC------CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEECCc
Confidence 688887654 46899999999999999999 99999999999999988788888888643 4578899888765
No 106
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.82 E-value=4.7e-09 Score=89.18 Aligned_cols=78 Identities=19% Similarity=0.341 Sum_probs=62.0
Q ss_pred eeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++..++..++...++. .++.++|+|.|+
T Consensus 30 ~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~ 108 (117)
T 1ujd_A 30 NGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQ-QSGEAEICVRLD 108 (117)
T ss_dssp CSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHSC-CSSCEEEEEESS
T ss_pred CcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhc-CCCEEEEEEEEC
Confidence 5688877432110 0011268899999999999999 99999999999999999888888888875 788999999987
Q ss_pred Ce
Q 012727 301 AE 302 (457)
Q Consensus 301 g~ 302 (457)
++
T Consensus 109 ~~ 110 (117)
T 1ujd_A 109 LN 110 (117)
T ss_dssp CC
T ss_pred Cc
Confidence 65
No 107
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Probab=98.82 E-value=7.4e-09 Score=86.72 Aligned_cols=78 Identities=29% Similarity=0.425 Sum_probs=61.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC--CCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP--EGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~--~G~~v~L~v~r~ 300 (457)
.++|+.+..... .....+++|.+|.++|||+++| |++||+|++|||+++.+++.+++...++.. .+..++|+|.|.
T Consensus 17 ~~lG~~i~g~~~-~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~ 95 (108)
T 3cbz_A 17 NFLGISIVGQSN-ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95 (108)
T ss_dssp CCCCEEEEEECS-STTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTSSSCEEEEEECC
T ss_pred CccCEEEEcCcC-CCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccCCCeEEEEEEeC
Confidence 457877754311 1124578999999999999999 999999999999999998888888888754 345799999886
Q ss_pred Ce
Q 012727 301 AE 302 (457)
Q Consensus 301 g~ 302 (457)
++
T Consensus 96 ~~ 97 (108)
T 3cbz_A 96 GG 97 (108)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 108
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.81 E-value=4.9e-09 Score=87.75 Aligned_cols=77 Identities=27% Similarity=0.418 Sum_probs=61.4
Q ss_pred eeeeEEEeecCC-CCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTA-SDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~-~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+..... ......+++|..|.++|||+++| |++||+|++|||+++..++.+++...++..++..++|+|.|.
T Consensus 26 ~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~R~ 104 (108)
T 2d92_A 26 KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHLGICSG 104 (108)
T ss_dssp SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHSCSEEEEEEEECC
T ss_pred CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcC
Confidence 478888754211 01123578999999999999999 999999999999999988888998888766667888988775
No 109
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.81 E-value=7.5e-09 Score=88.57 Aligned_cols=82 Identities=23% Similarity=0.336 Sum_probs=64.2
Q ss_pred CceeeeeEEEeecCCC-CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEE
Q 012727 221 GALTGVGLSIGYPTAS-DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTV 297 (457)
Q Consensus 221 ~~~~glGi~~~~~~~~-~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~-G~~v~L~v 297 (457)
+...++|+.+...... ......++|..|.++|||+++| |++||+|++|||+++.+++.+++.+.++... |+.++|+|
T Consensus 24 ~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v 103 (122)
T 1v5q_A 24 DPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEI 103 (122)
T ss_dssp CSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred CCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEE
Confidence 3456789988642100 0113468999999999999999 9999999999999999877788888776544 88999999
Q ss_pred EeCCe
Q 012727 298 RSGAE 302 (457)
Q Consensus 298 ~r~g~ 302 (457)
.|++.
T Consensus 104 ~R~~~ 108 (122)
T 1v5q_A 104 EFDVA 108 (122)
T ss_dssp EEECC
T ss_pred EECCc
Confidence 88764
No 110
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*
Probab=98.81 E-value=1e-08 Score=85.74 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=59.3
Q ss_pred eeeeEEEeecCCCC---------CCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEE
Q 012727 224 TGVGLSIGYPTASD---------GSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVE 294 (457)
Q Consensus 224 ~glGi~~~~~~~~~---------~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~ 294 (457)
.|+|+.+....... ..+.+++|..|.++|||+++||++||+|++|||+++.+++..++...++. .|+.+.
T Consensus 19 ~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~-~~~~v~ 97 (109)
T 1q3o_A 19 EGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ-GGNTLM 97 (109)
T ss_dssp SCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHH-TTTEEE
T ss_pred CCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCEEE
Confidence 47888876542100 01226899999999999999999999999999999999987888877764 477888
Q ss_pred EEEEeC
Q 012727 295 LTVRSG 300 (457)
Q Consensus 295 L~v~r~ 300 (457)
|++.|.
T Consensus 98 l~v~~~ 103 (109)
T 1q3o_A 98 VKVVMV 103 (109)
T ss_dssp EEEEEE
T ss_pred EEEEEC
Confidence 888653
No 111
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.81 E-value=8e-09 Score=85.87 Aligned_cols=77 Identities=29% Similarity=0.420 Sum_probs=61.3
Q ss_pred eeeeEEEeecCCC---CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~---~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+...... ...+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++.. ++.++|+|.|
T Consensus 18 ~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~-g~~v~l~v~R 96 (105)
T 1wha_A 18 RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA-SPTIALLLER 96 (105)
T ss_dssp TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTSC-CSCEEEEEEE
T ss_pred CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEEE
Confidence 3578877542110 0113579999999999999999 999999999999999998778888888754 8889999988
Q ss_pred CC
Q 012727 300 GA 301 (457)
Q Consensus 300 ~g 301 (457)
++
T Consensus 97 ~~ 98 (105)
T 1wha_A 97 EA 98 (105)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 112
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.81 E-value=2.8e-09 Score=90.97 Aligned_cols=77 Identities=18% Similarity=0.311 Sum_probs=62.1
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecC--CCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMP--GGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~--gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
|+++.+... ......+++|..|.+ +|||++|||++||+|++|||+++..+..+++...+... |+.+.|+|.|+++
T Consensus 30 G~~v~l~~~--~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~~-g~~v~l~v~R~g~ 106 (118)
T 2yub_A 30 GFSVTVESA--SSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT-SQTLQLLIEHDPV 106 (118)
T ss_dssp SSEEEEECT--TSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHCC-SSCEEEEEEECSS
T ss_pred eEEEEeccc--cccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHhC-CCEEEEEEEECCE
Confidence 566654322 112246799999999 99999999999999999999999998778888888766 8899999999886
Q ss_pred EE
Q 012727 303 IR 304 (457)
Q Consensus 303 ~~ 304 (457)
.+
T Consensus 107 ~~ 108 (118)
T 2yub_A 107 PQ 108 (118)
T ss_dssp CC
T ss_pred EE
Confidence 43
No 113
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A
Probab=98.81 E-value=5.6e-09 Score=90.30 Aligned_cols=75 Identities=25% Similarity=0.356 Sum_probs=60.9
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~-G~~v~L~v~r~g 301 (457)
.|+|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++.+.++... |+.++|+|.|++
T Consensus 29 ~g~G~~i~g~~~---~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~~ 105 (129)
T 2kpk_A 29 RGFGFTVVGGDE---PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLELCRGY 105 (129)
T ss_dssp SCCSEEEEEEEE---TTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTEEEEEEEEECS
T ss_pred CcccEEEeCccC---CCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEeCC
Confidence 367887754210 12358999999999999999 9999999999999999887788888887644 888999998875
No 114
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A
Probab=98.81 E-value=1.6e-08 Score=84.14 Aligned_cols=78 Identities=19% Similarity=0.353 Sum_probs=59.0
Q ss_pred eeeeeEEEeecCCC---CCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 223 LTGVGLSIGYPTAS---DGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 223 ~~glGi~~~~~~~~---~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
..|+|+.+...... .....+++|..|.++|||+ +||++||+|++|||+++.++........+. ..|+.++|++.|
T Consensus 18 ~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 95 (107)
T 2h2b_A 18 GFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLR-KSGKNAKITIRR 95 (107)
T ss_dssp TTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHH-TCCSEEEEEEEE
T ss_pred CCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhh-CCCCEEEEEEEE
Confidence 35788887643210 0123589999999999999 999999999999999999986554444444 578899999988
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
+++
T Consensus 96 ~~~ 98 (107)
T 2h2b_A 96 KKG 98 (107)
T ss_dssp ESC
T ss_pred CCC
Confidence 764
No 115
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A
Probab=98.81 E-value=6.9e-09 Score=84.98 Aligned_cols=70 Identities=20% Similarity=0.135 Sum_probs=56.2
Q ss_pred eEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCC--eEEEEEEEeeccc
Q 012727 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGA--EIRHLALTREKVS 314 (457)
Q Consensus 243 vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g--~~~~vtl~r~~~~ 314 (457)
.+|..|.++|||++|||++||+|++|||+++.++ +++...+... .++.+.+++.|++ ..++++++.....
T Consensus 4 p~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g~~~~~~~~l~l~~~~ 76 (95)
T 3id1_A 4 PVVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWA 76 (95)
T ss_dssp CBEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTTCCCCEEEEEECTTCC
T ss_pred CEEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECCCCceEEEEEEccccc
Confidence 4688999999999999999999999999999986 6666666543 3478999999986 4567777655543
No 116
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.80 E-value=6.2e-09 Score=86.92 Aligned_cols=78 Identities=28% Similarity=0.452 Sum_probs=60.9
Q ss_pred eeeeEEEee-----cCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 224 TGVGLSIGY-----PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 224 ~glGi~~~~-----~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
.++|+.+.. .......+.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .|+.++|++
T Consensus 20 ~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v 98 (108)
T 1q7x_A 20 NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRN-TGQVVHLLL 98 (108)
T ss_dssp CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEE
Confidence 468888761 11111124579999999999999999 99999999999999997666677777764 588999999
Q ss_pred EeCCe
Q 012727 298 RSGAE 302 (457)
Q Consensus 298 ~r~g~ 302 (457)
.|++.
T Consensus 99 ~R~~~ 103 (108)
T 1q7x_A 99 EKGQS 103 (108)
T ss_dssp ECCCC
T ss_pred EeCCc
Confidence 98775
No 117
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.80 E-value=7.1e-09 Score=87.00 Aligned_cols=73 Identities=33% Similarity=0.526 Sum_probs=60.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+... .+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .|+.+.|+|.|++.
T Consensus 26 ~~lG~~l~~~-----~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~~~ 99 (111)
T 2dlu_A 26 SGLGFGIVGG-----KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRN-CGNSVRMLVARDPA 99 (111)
T ss_dssp SCCCEEEECC-----SSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHH-HCSEEEEEEEESCT
T ss_pred CccCEEEecc-----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 4578877543 13579999999999999999 99999999999999998877888777764 57889999988654
No 118
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0
Probab=98.80 E-value=1.1e-08 Score=82.99 Aligned_cols=72 Identities=22% Similarity=0.410 Sum_probs=59.1
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
++|+.+... ....+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++...+ .++|++.+..
T Consensus 16 ~lG~~i~~~----~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~-~v~l~v~~~~ 88 (93)
T 3o46_A 16 PLGATIKKD----EQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQG-AITFKIIPGS 88 (93)
T ss_dssp CCCEEEEEC----TTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCE-EEEEEEECC-
T ss_pred CccEEEEec----CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC-eEEEEEEeCC
Confidence 688887643 123578999999999999999 99999999999999988888888888876544 8888887654
No 119
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Probab=98.79 E-value=1.3e-08 Score=84.16 Aligned_cols=73 Identities=26% Similarity=0.442 Sum_probs=59.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.|+|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++...+.. .++.++|++.|++
T Consensus 22 ~glG~~~~~~~----~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 95 (104)
T 3i4w_A 22 TGLGFNIVGGE----XGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 95 (104)
T ss_dssp TBTSEEEEECC-----CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CccCEEEECCC----CCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECc
Confidence 36888875441 12379999999999999999 99999999999999988877777766664 6788999988764
No 120
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Probab=98.79 E-value=7.3e-09 Score=89.95 Aligned_cols=78 Identities=15% Similarity=0.198 Sum_probs=60.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC-CCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP-EGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~-~G~~v~L~v~r~g 301 (457)
.++|+.+...........+++|..|.++|||+++| |++||+|++|||+++.+.+.+++...++.. +++.++|+|.|++
T Consensus 48 ~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g 127 (131)
T 1wfg_A 48 AMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRSG 127 (131)
T ss_dssp TTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEEEC
T ss_pred CCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEcCC
Confidence 45777764311111112378999999999999999 999999999999999988788888888654 6789999998765
No 121
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}
Probab=98.79 E-value=9e-09 Score=86.57 Aligned_cols=69 Identities=28% Similarity=0.466 Sum_probs=59.0
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|..|.++|||+++||++||+|++|||+++.++ .++...+. .|+.+.+++.|+++.++++++...
T Consensus 34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~--~g~~v~l~v~R~g~~~~~~v~~~~ 102 (112)
T 2p3w_A 34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL--TESPLLLEVRRGNDDLLFSIAPEV 102 (112)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH--HCSSEEEEEEETTEEEEEEECCEE
T ss_pred CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh--CCCeEEEEEEECCEEEEEEEEEee
Confidence 3579999999999999999999999999999999875 66666663 578999999999998888776543
No 122
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.79 E-value=1.2e-08 Score=86.18 Aligned_cols=78 Identities=27% Similarity=0.326 Sum_probs=61.5
Q ss_pred eeeeEEEeecCCCCCCC----CceEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSS----AGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~----~~vvV~~V~~gSpA~~-AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.++|+.+.........+ -.++|..|.++|||++ +||++||+|++|||+++.+++..++.+.++. .|+.+.|+|.
T Consensus 22 ~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~g~~v~l~v~ 100 (114)
T 1uew_A 22 EGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKD-AGLSVTLRII 100 (114)
T ss_dssp SCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHHH-TTTEEEEEEC
T ss_pred CCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEE
Confidence 46888875321110001 1458999999999999 9999999999999999999877888888875 7899999998
Q ss_pred eCCe
Q 012727 299 SGAE 302 (457)
Q Consensus 299 r~g~ 302 (457)
|+++
T Consensus 101 r~~~ 104 (114)
T 1uew_A 101 PQEE 104 (114)
T ss_dssp CCSC
T ss_pred eCCc
Confidence 8775
No 123
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.1e-08 Score=82.96 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=58.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+... +.+++|..|.++|||+++| |++||+|++|||+++ ..+.+++.+.++. .++++.|++.|.
T Consensus 18 ~~lG~~i~~~------~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~-~~~~v~l~v~~~ 87 (91)
T 2e7k_A 18 EHLGVTFRVE------GGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRN-ASGSVILKILSG 87 (91)
T ss_dssp CCCCEEEEES------SSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHT-CCSSBCEEEECC
T ss_pred CcEeEEEEec------CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHc-CCCeEEEEEEEC
Confidence 4688888654 4689999999999999987 999999999999999 6667888888876 467888888764
No 124
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}
Probab=98.79 E-value=8.6e-09 Score=83.02 Aligned_cols=74 Identities=26% Similarity=0.319 Sum_probs=58.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~-G~~v~L~v~r~ 300 (457)
.|+|+.+.... ..+.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++... +..++|++.|.
T Consensus 13 ~g~G~~~~~g~---~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~v~l~v~R~ 88 (90)
T 2q9v_A 13 TGFGFRILGGN---EPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88 (90)
T ss_dssp TBCCEEEEECS---STTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTEEEEEEEEC
T ss_pred CccCEEEEccc---cCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEEec
Confidence 46888775321 113458999999999999999 9999999999999998877778777776432 45889988765
No 125
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2
Probab=98.78 E-value=3.5e-09 Score=90.08 Aligned_cols=79 Identities=23% Similarity=0.276 Sum_probs=63.4
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
..++|+.+.... +....+++|..|.++|||+++| |++||+|++|||+++..++..++...++...+..+.+++.|++
T Consensus 26 ~~~lG~~i~g~~--~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~~~l~v~R~~ 103 (119)
T 1x6d_A 26 GAGLGFSLAGGA--DLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103 (119)
T ss_dssp TSCCSEEEECCS--SSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSSEEEEEEECC
T ss_pred CCccCEEEeCCC--CCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 457888875431 1113479999999999999999 9999999999999999877788888887666777778888877
Q ss_pred eE
Q 012727 302 EI 303 (457)
Q Consensus 302 ~~ 303 (457)
+.
T Consensus 104 ~~ 105 (119)
T 1x6d_A 104 TP 105 (119)
T ss_dssp CS
T ss_pred Cc
Confidence 53
No 126
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.78 E-value=7.5e-09 Score=87.75 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=59.5
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
.++|+.+.... +.+++|..|.++|||+++||++||+|++|||+++.++...+....+ ...++.++|++.|+++.
T Consensus 30 ~~lG~~~~~~~-----~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~-~~~g~~v~l~v~r~~~~ 103 (117)
T 1uit_A 30 EPLGISIVSGE-----KGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLII-GQQCDTITILAQYNPHV 103 (117)
T ss_dssp CCCCEEEEECT-----TSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHT-TSCCSEEEEEECCCSCC
T ss_pred CCccEEEEccC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHH-HcCCCeEEEEEEECCch
Confidence 45777775431 3589999999999999999999999999999999988655544333 35788999999887764
Q ss_pred E
Q 012727 304 R 304 (457)
Q Consensus 304 ~ 304 (457)
.
T Consensus 104 ~ 104 (117)
T 1uit_A 104 H 104 (117)
T ss_dssp C
T ss_pred h
Confidence 3
No 127
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Probab=98.78 E-value=1.4e-08 Score=82.98 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=57.9
Q ss_pred eeeeEEEeec-C---CCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGYP-T---ASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~-~---~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+... . .....+.+++|..|.++|||+++||++||+|++|||+++.+++.+++...++.. +..++|++.+
T Consensus 16 ~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-~~~v~l~v~~ 94 (96)
T 2ego_A 16 QTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIKAS-GNVLRLETLY 94 (96)
T ss_dssp CCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEEEC
T ss_pred CCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEE
Confidence 4677777531 0 001123478999999999999999999999999999999998778888877755 5588888865
Q ss_pred C
Q 012727 300 G 300 (457)
Q Consensus 300 ~ 300 (457)
+
T Consensus 95 ~ 95 (96)
T 2ego_A 95 G 95 (96)
T ss_dssp C
T ss_pred C
Confidence 4
No 128
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}
Probab=98.78 E-value=1.2e-08 Score=85.19 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=56.9
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+... +.+++|..|.++|||+++| |++||+|++|||+++.+....++...++. .+.++.|++.|.
T Consensus 14 ~glG~~i~~~------~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~ 84 (106)
T 2la8_A 14 KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 84 (106)
T ss_dssp STTCCEEEEC------SSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHS-CBSCEEEEEEEC
T ss_pred CccCEEEEeC------CCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCCeEEEEEEeC
Confidence 4577776443 3579999999999999999 99999999999999998766676666664 456799988775
No 129
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.77 E-value=5.8e-09 Score=89.93 Aligned_cols=82 Identities=24% Similarity=0.315 Sum_probs=64.0
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEI 303 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~ 303 (457)
.++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++ .++.+.|++.|+++.
T Consensus 32 ~~lG~~~~~~~---~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~--~~~~v~l~v~R~g~~ 106 (128)
T 1uf1_A 32 RSLGLTIRGGA---EYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLK--SSRHLILTVKDVGRL 106 (128)
T ss_dssp CCCCEEEECCT---TTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHT--TCSEEEEEEECCSCC
T ss_pred CccCEEEECcc---cCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHh--cCCeEEEEEEECCcc
Confidence 34777765421 1124789999999999999999999999999999999987677777775 357999999999876
Q ss_pred EEEEEEe
Q 012727 304 RHLALTR 310 (457)
Q Consensus 304 ~~vtl~r 310 (457)
.+++++.
T Consensus 107 ~~~~v~~ 113 (128)
T 1uf1_A 107 PHARTTV 113 (128)
T ss_dssp SSCSCCC
T ss_pred ccccccc
Confidence 6555443
No 130
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.77 E-value=7.3e-09 Score=86.41 Aligned_cols=77 Identities=26% Similarity=0.311 Sum_probs=60.0
Q ss_pred eeeeEEEee---cCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~---~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++..++..++...++. .++.++|+|.|
T Consensus 20 ~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~R 98 (107)
T 1wf8_A 20 DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN-TKGNVRFVIGR 98 (107)
T ss_dssp TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCCeEEEEEEe
Confidence 468888765 11000113578999999999999999 99999999999999998777777776664 57899999977
Q ss_pred CC
Q 012727 300 GA 301 (457)
Q Consensus 300 ~g 301 (457)
++
T Consensus 99 ~~ 100 (107)
T 1wf8_A 99 EK 100 (107)
T ss_dssp EC
T ss_pred CC
Confidence 54
No 131
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A
Probab=98.76 E-value=9e-09 Score=88.88 Aligned_cols=61 Identities=18% Similarity=0.402 Sum_probs=53.8
Q ss_pred CceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++ ..+..++|++.|+++
T Consensus 65 ~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~-~~~~~v~l~v~r~~~ 126 (128)
T 1nf3_C 65 PGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI-ANSRNLIITVRPANQ 126 (128)
T ss_dssp EEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHHHHHHH-HTTTSEEEEEECCCC
T ss_pred CCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEECCc
Confidence 368999999999999999 9999999999999998888888888886 456789999988764
No 132
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Probab=98.76 E-value=1.6e-08 Score=81.48 Aligned_cols=72 Identities=24% Similarity=0.374 Sum_probs=57.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+..... .+.+++|..|.++|||+++ ||++||+|++|||+++.+++..++...++. .++.++|++.|
T Consensus 16 ~~lG~~i~~~~~---~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 88 (90)
T 1qav_A 16 GGLGISIKGGRE---NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKY 88 (90)
T ss_dssp TCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEE
T ss_pred CCcCEEEEcccC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEE
Confidence 467887753211 1246899999999999999 999999999999999998877888777764 57788888865
No 133
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.75 E-value=1.1e-08 Score=82.77 Aligned_cols=74 Identities=31% Similarity=0.491 Sum_probs=59.1
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+.... ..+.+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.++|++.|++
T Consensus 16 ~glG~~l~~~~---~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 90 (93)
T 2dkr_A 16 EGLGFNIMGGK---EQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKA-AQGSVKLVVRSGP 90 (93)
T ss_dssp TCCCEEEECSS---SSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHH-CCSEEEEEECCCC
T ss_pred CCccEEEeccc---CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEeCC
Confidence 56888875321 114579999999999999996 99999999999999998877888777764 3567888887754
No 134
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Probab=98.75 E-value=1.9e-08 Score=91.41 Aligned_cols=76 Identities=26% Similarity=0.327 Sum_probs=61.8
Q ss_pred eeeeEEEee---cCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGY---PTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~---~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.|+|+.+.. .........+++|..|.++|||+++| |++||+|++|||+++.+++..++...+++ .|..|+|+|.|
T Consensus 91 ~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~-~g~~v~L~V~R 169 (170)
T 3egg_C 91 EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN-TKGRVRFMIGR 169 (170)
T ss_dssp TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCEEEEEEEe
Confidence 478888765 11111123578999999999999999 99999999999999999888888888876 67899999987
Q ss_pred C
Q 012727 300 G 300 (457)
Q Consensus 300 ~ 300 (457)
+
T Consensus 170 ~ 170 (170)
T 3egg_C 170 E 170 (170)
T ss_dssp C
T ss_pred C
Confidence 4
No 135
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=3.5e-09 Score=87.38 Aligned_cols=74 Identities=20% Similarity=0.201 Sum_probs=57.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+..... .+.+++|..|.++|||+++ ||++||+|++|||+++.++ ..++...++. .++.++|++.|+++
T Consensus 21 ~~~G~~~~gg~~---~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~-~~~~v~l~v~R~~~ 95 (100)
T 2edp_A 21 APWGFTLKGGLE---HCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKG-SFRILKLIVRRRNS 95 (100)
T ss_dssp SCCCCCEEEEGG---GTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHT-CCSSCEEEEEECCC
T ss_pred CCcCEEEeccCC---CCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHh-CCCeEEEEEEeCCC
Confidence 356776643210 1235889999999999999 9999999999999999886 4667677764 47889999988764
No 136
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.74 E-value=1.4e-08 Score=86.58 Aligned_cols=78 Identities=24% Similarity=0.368 Sum_probs=61.5
Q ss_pred eeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.++|+|.|+
T Consensus 28 ~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~ 106 (120)
T 2eno_A 28 SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRN-AGYAVSLRVQHR 106 (120)
T ss_dssp SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHH-HCSEEEEEEEEE
T ss_pred CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 5788888642110 0014579999999999999999 99999999999999999877777777764 478899999876
Q ss_pred Ce
Q 012727 301 AE 302 (457)
Q Consensus 301 g~ 302 (457)
+.
T Consensus 107 ~~ 108 (120)
T 2eno_A 107 LQ 108 (120)
T ss_dssp EE
T ss_pred Cc
Confidence 54
No 137
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A
Probab=98.74 E-value=3e-08 Score=80.71 Aligned_cols=75 Identities=24% Similarity=0.289 Sum_probs=58.1
Q ss_pred eeeEEEeecCC-----CCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 225 GVGLSIGYPTA-----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 225 glGi~~~~~~~-----~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
++|+.+..... ....+.+++|..|.++|||++ ||++||+|++|||+++...+..++...++ ..++.++|++.|
T Consensus 14 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~R 91 (95)
T 1mfg_A 14 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 91 (95)
T ss_dssp SCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHH-HCCSEEEEEEEE
T ss_pred CCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 57887754211 111245899999999999999 99999999999999999876667666665 468899999877
Q ss_pred CC
Q 012727 300 GA 301 (457)
Q Consensus 300 ~g 301 (457)
+.
T Consensus 92 ~~ 93 (95)
T 1mfg_A 92 EV 93 (95)
T ss_dssp EC
T ss_pred CC
Confidence 53
No 138
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A
Probab=98.74 E-value=2.4e-08 Score=78.33 Aligned_cols=59 Identities=29% Similarity=0.426 Sum_probs=50.1
Q ss_pred ceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 242 GLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
+++|..|.++|||+++| |++||+|++|||+++..++..++...+.... ..+.+++.|+|
T Consensus 22 gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~R~g 81 (81)
T 2rcz_A 22 HIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSK-GKLKMVVQRDE 81 (81)
T ss_dssp EEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTST-TEEEEEEEC--
T ss_pred CEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCC-CeEEEEEEeCC
Confidence 78999999999999999 9999999999999999776788887777544 48888887754
No 139
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=98.73 E-value=4.9e-08 Score=97.32 Aligned_cols=84 Identities=23% Similarity=0.388 Sum_probs=68.0
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEe-C
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRS-G 300 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r-~ 300 (457)
.+.+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.++ .++...+.. .+|++++|++.| +
T Consensus 228 ~~~lGi~~~~~~----~~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~~ 301 (324)
T 1y8t_A 228 HASLGVQVTNDK----DTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQDPS 301 (324)
T ss_dssp CEECCEEEESCS----SSSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEECSS
T ss_pred ccccceEeeecc----CCCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 355787775321 14579999999999999999999999999999999986 566666644 579999999999 9
Q ss_pred CeEEEEEEEeec
Q 012727 301 AEIRHLALTREK 312 (457)
Q Consensus 301 g~~~~vtl~r~~ 312 (457)
|+.++++++...
T Consensus 302 g~~~~~~v~~~~ 313 (324)
T 1y8t_A 302 GGSRTVQVTLGK 313 (324)
T ss_dssp CCEEEEEEECEE
T ss_pred CCEEEEEEEEcc
Confidence 998888887643
No 140
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.73 E-value=1.2e-08 Score=86.77 Aligned_cols=76 Identities=24% Similarity=0.377 Sum_probs=61.2
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+..... ...++++|..|.++|||+++| |++||+|++|||+++.+.+.+++.+.++ ..|+.++|+|.|+++
T Consensus 27 ~~lG~~i~~~~~--~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (117)
T 1v62_A 27 SALGISLTTTSL--RNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLA-SISEKVRLEILPVPQ 103 (117)
T ss_dssp CCCCCEEEEECC--SSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHH-SCSSEEEEEECCBTT
T ss_pred CcccEEEEccCC--CCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEEECCC
Confidence 357777654311 012348999999999999999 9999999999999998888889988887 478999999987664
No 141
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.72 E-value=1.1e-08 Score=87.68 Aligned_cols=76 Identities=26% Similarity=0.389 Sum_probs=60.5
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.... +....+++|..|.++|||+++| |++||+|++|||+++.+.+..++...++. .+..+.|+|.|+++
T Consensus 36 ~glG~~l~~~~--~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~-~~~~v~l~v~R~~~ 112 (124)
T 2daz_A 36 NGLGLSLAGNK--DRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKT-APSKVKLVFIRNED 112 (124)
T ss_dssp SCCCEEEECBS--STTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHH-SCSEEEEEEEECTT
T ss_pred CccCEEEeccC--CCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeCCC
Confidence 47888875431 1113478999999999999999 99999999999999998877777766654 45689999988764
No 142
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.72 E-value=2.9e-08 Score=82.70 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=60.6
Q ss_pred eeeeEEEeecCCC-----CCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 224 TGVGLSIGYPTAS-----DGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 224 ~glGi~~~~~~~~-----~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
.++|+.+...... ...+.+++|..|.++|||+++ ||++||+|++|||+++...+..++...++. .++.+.|++
T Consensus 19 ~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v 97 (107)
T 1uhp_A 19 GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKT-AKEPIVVQV 97 (107)
T ss_dssp SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHHHHH-CCSSEEEEE
T ss_pred CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCcEEEEE
Confidence 5688887532110 112457999999999999999 999999999999999998877787777764 578899998
Q ss_pred EeCC
Q 012727 298 RSGA 301 (457)
Q Consensus 298 ~r~g 301 (457)
.|.+
T Consensus 98 ~R~~ 101 (107)
T 1uhp_A 98 LRRT 101 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 7754
No 143
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium channel 3 chimera; PDZ domain, PDZ binding, GIRK3 regulation, early endosomes; 1.68A {Rattus norvegicus} SCOP: b.36.1.0 PDB: 3qdo_A 3qgl_A
Probab=98.72 E-value=3.6e-08 Score=82.05 Aligned_cols=59 Identities=29% Similarity=0.413 Sum_probs=51.6
Q ss_pred eEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 243 LVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 243 vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
++|..|.++|||+++||++||+|++|||+++..++..++...++ ..|+.+.|++.|.+.
T Consensus 45 ~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~r~~~ 103 (107)
T 3qe1_A 45 QHVSAVLPGGAADRAGVRKGDRILEVNGVNVEGATHKQVVDLIR-AGEKELILTVLSVES 103 (107)
T ss_dssp EEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHH-HCSSEEEEEEECSSC
T ss_pred eEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCEEEEEEEcCCC
Confidence 35999999999999999999999999999999887788888776 468899999987643
No 144
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.70 E-value=1.5e-08 Score=82.18 Aligned_cols=56 Identities=21% Similarity=0.299 Sum_probs=48.9
Q ss_pred EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 244 vV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
+|..|.++|||+++||++||+|++|||+++.+.+..++.+.++ ..|+.++|++.+.
T Consensus 34 ~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~-~~g~~v~l~v~p~ 89 (90)
T 1y7n_A 34 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILS-NAVGEIHMKTMPA 89 (90)
T ss_dssp EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHH-HCCEEEEEEEECC
T ss_pred EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEEEC
Confidence 8999999999999999999999999999998777788888886 3578888887653
No 145
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.70 E-value=1e-08 Score=85.03 Aligned_cols=74 Identities=31% Similarity=0.396 Sum_probs=60.1
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
++|+.+.... ..+.+++|..|.++|||+++||++||+|++|||+++.+++..++...++.. ++.++|++.|+++
T Consensus 16 ~lG~~l~~g~---~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~-g~~v~l~v~R~g~ 89 (103)
T 1v5l_A 16 PWGFRLSGGI---DFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA-SYQLCLKIDRAET 89 (103)
T ss_dssp CCSBCCEEET---TTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTC-CSEEECEECCCTT
T ss_pred CcCEEEeccc---cCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCeEEEEEEECCe
Confidence 4666554321 012368899999999999999999999999999999997778888888765 8999999988875
No 146
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A
Probab=98.69 E-value=3.2e-08 Score=91.40 Aligned_cols=74 Identities=26% Similarity=0.350 Sum_probs=62.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.|+|+.+..... ...+++|..|.+||||+++||++||+|++|||.++.+++..++...++. |+.+.|+|.|+|+
T Consensus 96 ~~lG~~i~~~~~---~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~--~~~v~l~v~r~g~ 169 (192)
T 3k1r_A 96 EGLGLSVRGGLE---FGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT--EKTVSIKVRHIGL 169 (192)
T ss_dssp TCCCEEEEEEGG---GTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS--SSEEEEEEEECCE
T ss_pred CceeEEEEcccc---cCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC--CCeEEEEEEECCc
Confidence 468887743210 1347899999999999999999999999999999999888888888875 8999999999886
No 147
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.69 E-value=7.2e-09 Score=87.93 Aligned_cols=78 Identities=19% Similarity=0.356 Sum_probs=60.3
Q ss_pred eeeeeEEEeecCCCCC---CCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 223 LTGVGLSIGYPTASDG---SSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~---~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
..++|+.+........ ...+++|..|.++|||+ +||++||+|++|||+++..++..++...++. .++.+.|+|.|
T Consensus 25 ~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R 102 (117)
T 2csj_A 25 KRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK-SGKIAAIVVKR 102 (117)
T ss_dssp SSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEE
Confidence 3678888754311100 13468999999999997 9999999999999999998877777777764 68899999987
Q ss_pred CCe
Q 012727 300 GAE 302 (457)
Q Consensus 300 ~g~ 302 (457)
.+.
T Consensus 103 ~~~ 105 (117)
T 2csj_A 103 PRK 105 (117)
T ss_dssp EEE
T ss_pred CCc
Confidence 543
No 148
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Probab=98.69 E-value=2.4e-08 Score=82.55 Aligned_cols=74 Identities=24% Similarity=0.292 Sum_probs=58.4
Q ss_pred eeeEEEeecCC-----CCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 225 GVGLSIGYPTA-----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 225 glGi~~~~~~~-----~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
++|+.+..... ......+++|..|.++|||++ ||++||+|++|||+++.+.+..++...++ ..|+.++|++.|
T Consensus 22 ~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R 99 (103)
T 1n7t_A 22 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLK-TFQNTVELIIVR 99 (103)
T ss_dssp CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHHH-HCCSEEEEEEEC
T ss_pred CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHhh-cCCCeEEEEEEe
Confidence 67887754211 011245799999999999999 99999999999999999887777776665 468899999987
Q ss_pred C
Q 012727 300 G 300 (457)
Q Consensus 300 ~ 300 (457)
+
T Consensus 100 ~ 100 (103)
T 1n7t_A 100 E 100 (103)
T ss_dssp C
T ss_pred c
Confidence 5
No 149
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A
Probab=98.68 E-value=4.9e-08 Score=79.87 Aligned_cols=70 Identities=24% Similarity=0.318 Sum_probs=54.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.++|+.+..... ....+++|..|.++|||++|||++||+|++|||+++.+++.+++.+.+. ...++++|+
T Consensus 20 ~~~Gf~v~~~~~--~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~---~~~l~ltV~ 89 (94)
T 3kzd_A 20 DTYGFSLSSVEE--DGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS---QPSLGLLVR 89 (94)
T ss_dssp -CCSEEEEEECS--SSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH---SSEEEEEEE
T ss_pred CCcCEEEEecCC--CCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh---CCeEEEEEE
Confidence 457887754211 1124789999999999999999999999999999999888888877775 346777664
No 150
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Probab=98.68 E-value=4.5e-08 Score=83.10 Aligned_cols=73 Identities=26% Similarity=0.438 Sum_probs=58.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.|+|+.+..... ..+++|..|.++|||+++| |++||+|++|||+++.++...++...+.. .++.+.|++.|++
T Consensus 25 ~glG~~l~~~~~----~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~ 98 (119)
T 1tp5_A 25 TGLGFNIVGGED----GEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 98 (119)
T ss_dssp SCCCEEEEECGG----GCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHT-SCSEEEEEEEECH
T ss_pred CCccEEEecCCC----CCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 468888865421 2579999999999999999 99999999999999999875555555553 6788999988754
No 151
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Probab=98.67 E-value=5.8e-08 Score=80.81 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=51.3
Q ss_pred ceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEE
Q 012727 242 GLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALT 309 (457)
Q Consensus 242 ~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~ 309 (457)
++.|..+.++|||+++||++||+|++|||+++.++ .++...+.. .+|+.++|++.|+|+.++++++
T Consensus 38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g~~~~~~v~ 104 (105)
T 2i4s_A 38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDGQQHDVYIQ 104 (105)
T ss_dssp EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTST--THHHHHHHHHTTCSEEEEEEEETTEEEEEEEE
T ss_pred EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCeEEEEEEECCEEEEEEEe
Confidence 34566666667779999999999999999999987 344444432 4688999999999988777664
No 152
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}
Probab=98.67 E-value=1.4e-08 Score=84.14 Aligned_cols=93 Identities=17% Similarity=0.196 Sum_probs=62.3
Q ss_pred hcCCCCccccChhhhhhhhcccCCceeeeeEEEeecCC----CCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEec
Q 012727 198 TLDDPFTRFLEPEKFNSLRSGTQGALTGVGLSIGYPTA----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTST 273 (457)
Q Consensus 198 ~L~DpHt~~l~~~~~~~~~~~~~~~~~glGi~~~~~~~----~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v 273 (457)
.| |||+.+.+..-. +.. ....++|+.+..... ......+++|..|.++|||+++||++||+|++|||+++
T Consensus 7 ~l-~p~s~~~~~~v~--l~~---~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v 80 (104)
T 2z17_A 7 GL-SDFSWSQRKLVT--VEK---QDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVST 80 (104)
T ss_dssp -----CCCSCCCEEE--EEC---CTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEEC
T ss_pred cc-ccCCCCcceEEE--EEe---CCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEc
Confidence 44 788777654322 111 112346777764210 01123578999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 274 ESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 274 ~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
..++.+++.+.++...+ .++|+|
T Consensus 81 ~~~~~~~~~~~l~~~~~-~v~l~v 103 (104)
T 2z17_A 81 EGFTYKQVVDLIRSSGN-LLTIET 103 (104)
T ss_dssp TTCCHHHHHHHHHHTTT-EEEEEC
T ss_pred CCCCHHHHHHHHHhCCC-cEEEEE
Confidence 97778888888876543 776654
No 153
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A
Probab=98.67 E-value=4.3e-08 Score=78.32 Aligned_cols=71 Identities=27% Similarity=0.448 Sum_probs=55.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~-AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~ 298 (457)
.++|+.+..... .+.+++|..|.++|||++ +||++||+|++|||+++.+++..++...++ ..++.++|++.
T Consensus 14 ~~lG~~i~~~~~---~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~ 85 (87)
T 4e34_A 14 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS-QQRGEIEFEVV 85 (87)
T ss_dssp BCCCEEEEEEGG---GTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHH-HCCSEEEEEEE
T ss_pred CcccEEEEccCC---CCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-cCCCeEEEEEE
Confidence 457777643211 123689999999999999 799999999999999999888888887776 35667888775
No 154
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A
Probab=98.67 E-value=1e-07 Score=87.66 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=64.6
Q ss_pred eeeEEEeecCC-----CCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 225 GVGLSIGYPTA-----SDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 225 glGi~~~~~~~-----~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
|+||.+....+ ....+.+++|..|.++|||++ ||++||+|++|||+++.+....++...++. .+..+.|++.|
T Consensus 3 g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r 80 (195)
T 2qbw_A 3 ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELIIVR 80 (195)
T ss_dssp CSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHH-CCSEEEEEEEE
T ss_pred cccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 56776654311 011246899999999999999 999999999999999999877777777764 45699999988
Q ss_pred ---CCeEEEEEEEe
Q 012727 300 ---GAEIRHLALTR 310 (457)
Q Consensus 300 ---~g~~~~vtl~r 310 (457)
+|+..+++++.
T Consensus 81 ~~~~G~~~~~~v~~ 94 (195)
T 2qbw_A 81 EVGNGAKQEIRVRV 94 (195)
T ss_dssp ECSSSCEEEEEEEE
T ss_pred cCCCCCCceeEeEe
Confidence 78776666554
No 155
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}
Probab=98.67 E-value=6e-08 Score=82.12 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=60.3
Q ss_pred eeeeEEEeecCCC------CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEE
Q 012727 224 TGVGLSIGYPTAS------DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELT 296 (457)
Q Consensus 224 ~glGi~~~~~~~~------~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~ 296 (457)
.++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++...+..++...++. .|+.++|+
T Consensus 27 ~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~-~g~~v~l~ 105 (117)
T 2ehr_A 27 VSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKN-AGNPVVFI 105 (117)
T ss_dssp SCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHHHHHHHT-SCSSEEEE
T ss_pred CccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEE
Confidence 5688887432110 0113579999999999999999 99999999999999998887788777764 68899999
Q ss_pred EEeCC
Q 012727 297 VRSGA 301 (457)
Q Consensus 297 v~r~g 301 (457)
|.|..
T Consensus 106 v~r~~ 110 (117)
T 2ehr_A 106 VQSLS 110 (117)
T ss_dssp ECCBS
T ss_pred EEECC
Confidence 86643
No 156
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=98.66 E-value=5e-08 Score=97.08 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=62.3
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|..|.++|||++|||++||+|++|||+++.++ .++...+.. .+|++++|++.|+|+.++++++...
T Consensus 243 ~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~~~ 314 (318)
T 1te0_A 243 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDKQLTLQVTIQE 314 (318)
T ss_dssp CCCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSSCEEEEEEECEE
T ss_pred CCcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 3579999999999999999999999999999999875 677777765 6899999999999999888887643
No 157
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=83.80 Aligned_cols=68 Identities=25% Similarity=0.409 Sum_probs=56.5
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
++|+.+.. ..+++|..|.++|||+ +||++||+|++|||+++.+.+..++...++. .|+.++|++.|++
T Consensus 22 ~~G~~l~~-------~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~-~g~~v~l~v~R~~ 89 (96)
T 2edv_A 22 DYGFHISE-------SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILRE-AEDSLSITVVRCT 89 (96)
T ss_dssp SCSBCCCS-------SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHH-CSSCEEEEEEECC
T ss_pred cccEEEec-------CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECC
Confidence 56666532 2478899999999995 9999999999999999998877777777765 6899999998865
No 158
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}
Probab=98.65 E-value=9.9e-08 Score=80.68 Aligned_cols=71 Identities=24% Similarity=0.372 Sum_probs=59.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~ 302 (457)
.|+||.+... ..+..|..+.+ |++.+||++||+|++|||+++.+++.+++.+.++. +.|+.++|+|.|++.
T Consensus 23 ~G~GFsI~~~------~~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~ 94 (113)
T 3soe_A 23 KGFGFAIADS------PTGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGP 94 (113)
T ss_dssp TBSSEEEEEE------TTEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEEEEEESSC
T ss_pred CcccEEEeCC------CCCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEEEEEECCc
Confidence 4799998533 23566888887 68899999999999999999999988899998885 568999999999875
No 159
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A
Probab=98.65 E-value=6.1e-08 Score=80.62 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=57.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC--CCCCCEEEEECCEecCCCCHHHHHHHhcCCC---CCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG--ILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG--L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~---G~~v~L~v~ 298 (457)
.++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++..+...++...++... +..+.|+|.
T Consensus 29 ~~~G~~~~gg~~---~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~~~~~v~l~v~ 105 (107)
T 3nfk_A 29 GRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 105 (107)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGSBTTBEEEEEE
T ss_pred CCCCEEEEccCC---CCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCcEEEEEEE
Confidence 467777643210 12368999999999999999 9999999999999999988778877776533 358888887
Q ss_pred eC
Q 012727 299 SG 300 (457)
Q Consensus 299 r~ 300 (457)
|+
T Consensus 106 r~ 107 (107)
T 3nfk_A 106 PN 107 (107)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 160
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=1.2e-08 Score=84.89 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=58.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~ 302 (457)
.++|+.+.... ...+++|..|.++|||+++||++||+|++|||+++..++..++...++. .++.+.+++.|.+.
T Consensus 19 ~~~G~~l~~~~----~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~~v~l~v~r~~~ 92 (106)
T 2eei_A 19 GSYGFSLKTVQ----GKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKK-SGSRVMFLLVDKET 92 (106)
T ss_dssp SSCSCCEECCS----SCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHH-HCSEEEEEECCTTT
T ss_pred CCCCEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEcCch
Confidence 45777764331 1357899999999999999999999999999999998877777766653 47788898877653
No 161
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=98.64 E-value=4.8e-08 Score=98.42 Aligned_cols=71 Identities=21% Similarity=0.407 Sum_probs=62.5
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|..|.++|||++|||++||+|++|||+++.++ .++...+.. .+|++++|++.|+|+.++++++...
T Consensus 262 ~~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~ 333 (345)
T 3stj_A 262 QRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDT 333 (345)
T ss_dssp CSSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECEE
T ss_pred CceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEcc
Confidence 3579999999999999999999999999999999975 677666654 5899999999999999998887654
No 162
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Probab=98.64 E-value=6.6e-08 Score=82.90 Aligned_cols=73 Identities=21% Similarity=0.290 Sum_probs=58.3
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
..++|+.+..... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .+..++|++.|
T Consensus 30 ~~~lG~~i~gg~~---~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~r 103 (125)
T 3hpk_A 30 QNLIGISIGGGAQ---YCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQE-VKGEVTIHYNK 103 (125)
T ss_dssp TSCCCEEEEECSS---CCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHH-SCSEEEEEEEE
T ss_pred CCCcCEEEeccCC---CCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEE
Confidence 3468887754311 12468999999999999999 99999999999999998877888888875 44568888876
No 163
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}
Probab=98.63 E-value=3.4e-08 Score=79.48 Aligned_cols=59 Identities=29% Similarity=0.436 Sum_probs=50.8
Q ss_pred CceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
++++|..|.++|||+++| |++||+|++|||+++.+.+.+++.+.++.. +.+++|++.+.
T Consensus 21 ~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~-~~~v~L~v~~~ 80 (88)
T 3e17_A 21 SQIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRD 80 (88)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHT-TTEEEEEECCC
T ss_pred CCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC-CCeEEEEEeCC
Confidence 378999999999999999 999999999999999888888888888754 45788877543
No 164
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.62 E-value=3.7e-08 Score=83.71 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=59.2
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc--CCCCCCEEEEECCEecCCCCHHHHHHHhcCCC---CCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA--GILSGDVILAIDDTSTESMGIYDAAERLQGPE---GSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A--GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~---G~~v~L~v~ 298 (457)
.++|+.+..... ...+++|..|.++|||+++ ||++||+|++|||+++..++..++...++... +..+.|+|.
T Consensus 27 ~~~G~~l~gg~~---~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~~~~~v~l~v~ 103 (119)
T 2cs5_A 27 GRFGFNVKGGYD---QKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 103 (119)
T ss_dssp SCCSEEEEEEGG---GTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCCSSCEEEEEE
T ss_pred CCcCEEEecccC---CCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhccccCCCEEEEEEE
Confidence 457887753311 1235899999999999999 99999999999999999888788877776433 258899988
Q ss_pred eCCe
Q 012727 299 SGAE 302 (457)
Q Consensus 299 r~g~ 302 (457)
|+..
T Consensus 104 R~~~ 107 (119)
T 2cs5_A 104 PNAV 107 (119)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8653
No 165
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}
Probab=98.62 E-value=5.1e-08 Score=80.82 Aligned_cols=74 Identities=27% Similarity=0.413 Sum_probs=58.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+..... .+.+++|..|.++|||+++ ||++||+|++|||+++.+.+..++...++. .+.+++|++.+..
T Consensus 21 ~~lG~~l~~g~~---~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~~~~ 95 (103)
T 2dc2_A 21 EGLGISITGGKE---HGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEVVYVA 95 (103)
T ss_dssp SCCCEEEEEEGG---GTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHH-CCSEEEEEEEECC
T ss_pred CccCEEEEeccC---CCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCcEEEEEEecC
Confidence 467887754311 1236899999999999995 999999999999999998888888888874 4458888887654
No 166
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.62 E-value=8.5e-08 Score=88.52 Aligned_cols=81 Identities=23% Similarity=0.330 Sum_probs=63.7
Q ss_pred ceeeeeEEEeecCCCCC-CCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCC-CCcEEEEEE
Q 012727 222 ALTGVGLSIGYPTASDG-SSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPE-GSPVELTVR 298 (457)
Q Consensus 222 ~~~glGi~~~~~~~~~~-~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~-G~~v~L~v~ 298 (457)
...|+|+.+........ ...+++|..|.++|||++|| |++||+|++|||+++.+.+..++...++... |+.++|++.
T Consensus 16 ~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~l~v~ 95 (196)
T 1p1d_A 16 PVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSITSKVTLEIE 95 (196)
T ss_dssp TTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCCSSSEEEEEEE
T ss_pred CCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEEEEEE
Confidence 34678888765321110 13468899999999999999 9999999999999999766678888777654 889999999
Q ss_pred eCCe
Q 012727 299 SGAE 302 (457)
Q Consensus 299 r~g~ 302 (457)
|+++
T Consensus 96 R~~~ 99 (196)
T 1p1d_A 96 FDVA 99 (196)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 8875
No 167
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.60 E-value=2.1e-07 Score=85.06 Aligned_cols=77 Identities=29% Similarity=0.455 Sum_probs=59.9
Q ss_pred eeeeEEEeecCCCC--CCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~--~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++ ..|+.+++++.|+
T Consensus 16 ~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~r~ 94 (196)
T 3gsl_A 16 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK-EAGSIVRLYVMRR 94 (196)
T ss_dssp TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHH-TSCSEEEEEEEEE
T ss_pred CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEec
Confidence 45788775432110 113579999999999999999 9999999999999999987666666665 3588999999876
Q ss_pred C
Q 012727 301 A 301 (457)
Q Consensus 301 g 301 (457)
+
T Consensus 95 ~ 95 (196)
T 3gsl_A 95 K 95 (196)
T ss_dssp C
T ss_pred C
Confidence 5
No 168
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=98.60 E-value=2e-08 Score=84.77 Aligned_cols=69 Identities=23% Similarity=0.288 Sum_probs=55.6
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+.. ...++|..|.++|||+++||++||+|++|||+++..++.+++.+.++...++.+.|+|.+
T Consensus 26 ~~~G~~l~~-------~~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~l~V~~ 94 (111)
T 1vae_A 26 GDLGFTLRG-------NTPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVS 94 (111)
T ss_dssp SCCSCCEES-------SSSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEECEEEEC
T ss_pred CcccEEEeC-------CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEEEEEEe
Confidence 356766532 246789999999999999999999999999999996667888888876566678888764
No 169
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A
Probab=98.60 E-value=9.8e-08 Score=80.34 Aligned_cols=74 Identities=18% Similarity=0.355 Sum_probs=58.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC-Ce
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG-AE 302 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~-g~ 302 (457)
.++|+.+.... ....+++|..|.++|||+++||++||+|++|||+++.++...++...++. +..+.|++.|+ ++
T Consensus 27 ~~lG~~l~~~~---~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~--~~~v~l~v~r~~g~ 101 (114)
T 1x5n_A 27 RGLGCSISSGP---IQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS--SRSLTISIVAAAGR 101 (114)
T ss_dssp CCCCEEEEECC---SSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHH--CSSEEEEECSSTTT
T ss_pred CceeEEEeecC---CCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhc--CCeEEEEEEcCCCC
Confidence 56888876431 12357999999999999999999999999999999999875566666653 35889999887 64
No 170
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.59 E-value=3.1e-08 Score=83.06 Aligned_cols=78 Identities=23% Similarity=0.334 Sum_probs=61.8
Q ss_pred eeeeeEEEeecCCC------CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEE
Q 012727 223 LTGVGLSIGYPTAS------DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVEL 295 (457)
Q Consensus 223 ~~glGi~~~~~~~~------~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L 295 (457)
..++|+.+...... .....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.++|
T Consensus 20 ~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~-~g~~v~l 98 (111)
T 1uju_A 20 GERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRS-VGDTLTV 98 (111)
T ss_dssp TCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHHHSS-CSSEEEE
T ss_pred CCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEE
Confidence 35688887543210 0123478999999999999999 99999999999999998878888888875 6888999
Q ss_pred EEEeCC
Q 012727 296 TVRSGA 301 (457)
Q Consensus 296 ~v~r~g 301 (457)
+|.|+.
T Consensus 99 ~v~r~~ 104 (111)
T 1uju_A 99 LVCDGF 104 (111)
T ss_dssp CCCCCC
T ss_pred EEEECC
Confidence 887754
No 171
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A
Probab=98.59 E-value=8.9e-08 Score=80.98 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=55.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEe
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRS 299 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r 299 (457)
.++|+.+.... ....+++|..|.++|||+++| |++||+|++|||+++...+..++...++... ..++|++.+
T Consensus 36 ~~lG~~l~~~~---~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~-~~v~l~v~~ 108 (114)
T 2gzv_A 36 NLIGISIGGGA---QYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVK-GEVTIHYNK 108 (114)
T ss_dssp SCCSEEEEECC---C--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC-SEEEEEEEC
T ss_pred CcEeEEEEeCC---CCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC-CeEEEEEEe
Confidence 45788876431 112368999999999999999 9999999999999997766788887776433 457777754
No 172
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.57 E-value=1.8e-07 Score=86.37 Aligned_cols=74 Identities=23% Similarity=0.226 Sum_probs=60.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRA-GILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~A-GL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+.... ....+++|..|.++|||+++ ||++||+|++|||+++.+++..++...+. ..|+++.|++.|++
T Consensus 19 ~~lG~~i~~~~---~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~-~~g~~v~l~v~R~~ 93 (200)
T 2qt5_A 19 TTLGLTVSGGI---DKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK-NVGERVVLEVEYEL 93 (200)
T ss_dssp CCCCEEEECCT---TSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHH-TCCSEEEEEEEEEC
T ss_pred CCCCEEEeccc---CCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCeEEEEEeccC
Confidence 46888875431 11346899999999999999 99999999999999999998778777665 45889999998765
No 173
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Probab=98.56 E-value=1.6e-07 Score=80.83 Aligned_cols=64 Identities=25% Similarity=0.393 Sum_probs=53.9
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEEeCCeEEEEEE
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~-~~~G~~v~L~v~r~g~~~~vtl 308 (457)
..+++|..|.++|||+++ |++||+|++|||+++.++ .++...+. ..+|+.+++++ |+|+ .++++
T Consensus 24 ~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~g~-~~v~l 88 (125)
T 2hga_A 24 PDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQGT-FHLKT 88 (125)
T ss_dssp CCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TTEE-EEEEC
T ss_pred CCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-ECCE-EEEEE
Confidence 457899999999999999 999999999999999986 67766676 36789999999 9887 44433
No 174
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.55 E-value=4.3e-08 Score=81.40 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=58.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCC----CCCcEEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGP----EGSPVELTVR 298 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~----~G~~v~L~v~ 298 (457)
.|+|+.+..... .....++|..|.+++||+++| |++||+|++|||+++..++.+++.+.++.. .++.+++.+.
T Consensus 17 ~glG~~i~gg~~--~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~~~~~i~l~v~ 94 (103)
T 1ufx_A 17 ATLGIAIEGGAN--TRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVT 94 (103)
T ss_dssp SSCCEEEECBTT--SSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSCSEEEEEEC
T ss_pred CcCCeEEECCCC--CCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccCCCCeEEEEEE
Confidence 578988854311 001124899999999999999 999999999999999998888888777643 5677888776
Q ss_pred eCC
Q 012727 299 SGA 301 (457)
Q Consensus 299 r~g 301 (457)
|.+
T Consensus 95 r~~ 97 (103)
T 1ufx_A 95 EFN 97 (103)
T ss_dssp CCC
T ss_pred Ecc
Confidence 654
No 175
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}
Probab=98.55 E-value=3.6e-09 Score=99.81 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=68.3
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcE-EEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPV-ELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v-~L~v~r~g 301 (457)
..|+|+.+.... ...+++|..|.++|||+++||++||+|++|||+++.+++..++...+... |+.+ .|++.|+|
T Consensus 19 ~~glG~~l~~~~----~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~-g~~v~~l~V~R~g 93 (216)
T 2krg_A 19 PSGYGFNLHSDK----SKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAG-GDETKLLVVDRET 93 (216)
T ss_dssp SSSSCEEECCCS----SSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHH-CSEEEEEECCHHH
T ss_pred CCCceEEEEecC----CCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhc-CCeEEEEEEEECC
Confidence 357899886541 12378999999999999999999999999999999966667887777654 7888 88888887
Q ss_pred eEE--EEEEEeecccc
Q 012727 302 EIR--HLALTREKVSL 315 (457)
Q Consensus 302 ~~~--~vtl~r~~~~~ 315 (457)
+.. ++++++..+..
T Consensus 94 ~~~~~~v~v~p~~~~~ 109 (216)
T 2krg_A 94 DEFFKKCRVIPSQEHL 109 (216)
T ss_dssp HHHHHHHTCCCCGGGG
T ss_pred EEEEEEEEEEEeeeec
Confidence 655 55666554433
No 176
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=98.54 E-value=1.2e-07 Score=95.53 Aligned_cols=71 Identities=30% Similarity=0.489 Sum_probs=62.5
Q ss_pred CceEEEEecCCCcccccCCCC-----------CCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEEeCCeEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILS-----------GDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~-----------GD~IlaIdG~~v~~~~~~~~~~~l~-~~~G~~v~L~v~r~g~~~~vtl 308 (457)
.+++|..|.++|||++|||++ ||+|++|||+++.++ .++...+. ..+|++++|++.|+|+.+++++
T Consensus 251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g~~~~~~v 328 (348)
T 3qo6_A 251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNG--SDLYRILDQCKVGDEVTVEVLRGDHKEKISV 328 (348)
T ss_dssp SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSS--HHHHHHHTTCCTTCEEEEEEECSSSEEEEEE
T ss_pred ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCH--HHHHHHHHhCCCcCEEEEEEEECCEEEEEEE
Confidence 589999999999999999999 999999999999987 67777774 3579999999999999998888
Q ss_pred Eeecc
Q 012727 309 TREKV 313 (457)
Q Consensus 309 ~r~~~ 313 (457)
+....
T Consensus 329 ~l~~~ 333 (348)
T 3qo6_A 329 TLEPK 333 (348)
T ss_dssp ECEEC
T ss_pred EEccC
Confidence 76543
No 177
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.53 E-value=8.9e-08 Score=98.08 Aligned_cols=72 Identities=24% Similarity=0.395 Sum_probs=62.7
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCC
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGA 301 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g 301 (457)
++|+.+.... +.+++|..|.+||||++|||++||+|++|||.++.+++.+++...+.. .+|+.++|++.|++
T Consensus 20 ~lG~~i~gg~-----~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l~v~r~~ 92 (391)
T 3tsz_A 20 SVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 92 (391)
T ss_dssp SCCEEEEEET-----TTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred ceeEEEEecC-----CCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEEEEeeCC
Confidence 5888875421 468999999999999999999999999999999998888888888876 68999999998865
No 178
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}
Probab=98.53 E-value=2.4e-07 Score=75.72 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=59.9
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~ 300 (457)
.++|+.+... ..+.++|..+.+||||++.| |++||+|++|||+++.+++..++.++|+. +.|.+++|.+.++
T Consensus 16 ~~LG~tI~~~-----g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~~L~lv~p 89 (95)
T 3gge_A 16 DSLGLTITDN-----GVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89 (95)
T ss_dssp SCCCEEEECS-----SSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred CCceEEEEcC-----CCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence 4688888532 13568899999999999988 99999999999999999999999998875 4567888887654
No 179
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}
Probab=97.93 E-value=1.1e-08 Score=86.48 Aligned_cols=70 Identities=27% Similarity=0.456 Sum_probs=52.3
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~-AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
.++|+.+.... ..+.+++|..|.++|||++ +||++||+|++|||+++.+.+..++...++. .+.+++|+|
T Consensus 39 ~glG~~l~~g~---~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~-~~~~v~l~V 109 (112)
T 2lob_A 39 EGLGISITGGK---EHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQ-QRGEIEFEV 109 (112)
Confidence 46787764321 1124689999999999999 9999999999999999977666677666653 444566655
No 180
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=98.50 E-value=2.3e-07 Score=92.59 Aligned_cols=68 Identities=34% Similarity=0.529 Sum_probs=59.7
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEee
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTRE 311 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~ 311 (457)
..+++|..|.++|||+++||++||+|++|||+++.++ .++.+.+.. ++++.|++.|+|+.++++++..
T Consensus 255 ~~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~~--~~l~~~l~~--~~~v~l~v~R~g~~~~~~v~~~ 322 (325)
T 1lcy_A 255 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA--EDVYEAVRT--QSQLAVQIRRGRETLTLYVTPE 322 (325)
T ss_dssp SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHTT--CSSEEEEEEETTEEEEEEECCE
T ss_pred CCCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHhC--CCeEEEEEEECCEEEEEEEEEe
Confidence 3589999999999999999999999999999999875 677777763 6899999999999988888653
No 181
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=98.49 E-value=6.6e-08 Score=81.07 Aligned_cols=73 Identities=27% Similarity=0.445 Sum_probs=58.8
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+.... ...+++|..|.++|||+++| |++||+|++|||+++.+++..++...+. ..++.+.|++.|++
T Consensus 26 ~glG~~l~~~~----~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~-~~~~~v~l~v~r~~ 99 (113)
T 1um7_A 26 TGLGFNIVGGE----DGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK-RAGQSVTIVAQYRP 99 (113)
T ss_dssp SCSSBCCBCCS----TTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHH-SCCSEEEEEEECCH
T ss_pred CcccEEEEecc----CCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH-hCCCcEEEEEEECc
Confidence 46787764331 13578899999999999999 9999999999999999987777776666 46788888887754
No 182
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.49 E-value=4.1e-07 Score=94.89 Aligned_cols=71 Identities=25% Similarity=0.365 Sum_probs=61.6
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEeecc
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTREKV 313 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r~~~ 313 (457)
.+++|..|.++|||++|||++||+|++|||+++.++ .++...+.. .+|++++|++.|+++.++++++....
T Consensus 282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~V~R~g~~~~~~v~l~~~ 353 (451)
T 3pv2_A 282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQA--TQVKTTISLLRVGSTVKIIVERDNKPLTLSAVVTDI 353 (451)
T ss_dssp CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEETTEEEEEEEECBCH
T ss_pred ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEEccC
Confidence 689999999999999999999999999999999986 566555553 68999999999999999888876543
No 183
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.48 E-value=1.5e-07 Score=79.79 Aligned_cols=58 Identities=26% Similarity=0.332 Sum_probs=49.5
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.+++|..|.++|||+++||++||+|++|||+++..++..++...+++ ..+.|+|.|..
T Consensus 44 ~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~---~~v~l~v~R~p 101 (114)
T 2d8i_A 44 RRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ---PSLGLLVRTYP 101 (114)
T ss_dssp EEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS---SEEEEEEEECC
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC---CcEEEEEEECC
Confidence 36899999999999999999999999999999998877788777763 37778777643
No 184
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.45 E-value=2.1e-07 Score=86.97 Aligned_cols=69 Identities=23% Similarity=0.366 Sum_probs=53.9
Q ss_pred CCceEEEEecCCCcccccCCCCC-CEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC--eEEEEEEE
Q 012727 240 SAGLVVISSMPGGPANRAGILSG-DVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA--EIRHLALT 309 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~G-D~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g--~~~~vtl~ 309 (457)
..+++|.+|.++|||++|||++| |+|++|||+++.++.. .....+...+|+++++++.|++ +..+++++
T Consensus 15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~-~~~~~~~~~~g~~v~l~v~R~~~~~~~~v~l~ 86 (209)
T 3rle_A 15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDND-TLKDLLKANVEKPVKMLIYSSKTLELRETSVT 86 (209)
T ss_dssp SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSS-HHHHHHHHTTTSCEEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHH-HHHHHHhcCCCCEEEEEEEecCCceEEEEEEc
Confidence 35789999999999999999999 9999999999998741 1123334467899999998864 45555554
No 185
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=98.45 E-value=3.3e-07 Score=84.86 Aligned_cols=70 Identities=17% Similarity=0.280 Sum_probs=58.2
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.++|+.+... ..+++|.+|.++|||+++| |++||+|++|||+++.+++..++...++. .+..+.|+|.|.
T Consensus 125 ~~lG~~~~~~------~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~-~~~~v~L~V~R~ 195 (206)
T 3r0h_A 125 KELGLSLSPN------EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKG-ANGKVSMEVTRP 195 (206)
T ss_dssp CCCCEEEEEC------SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHT-CCSEEEEEEEEE
T ss_pred CccCeEEEcC------CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEeC
Confidence 3578777543 3579999999999999999 99999999999999998877788777764 567888888764
No 186
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=98.42 E-value=4.5e-07 Score=82.80 Aligned_cols=79 Identities=27% Similarity=0.369 Sum_probs=61.4
Q ss_pred eeeEEEeecCCCC--CCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 225 GVGLSIGYPTASD--GSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 225 glGi~~~~~~~~~--~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
++|+.+....... ....+++|..|.++|||+++| |++||+|++|||+++.+++..++...++. .++.+.|++.|++
T Consensus 112 ~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~ 190 (196)
T 3gsl_A 112 GLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN-TYDVVYLKVAKPS 190 (196)
T ss_dssp BSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHHHHHHHHS-CCEEEEEEEEEES
T ss_pred CceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHHHHHHHHc-CCCeEEEEEeCCC
Confidence 5677664321110 112468999999999999999 99999999999999999777888888864 5788999998877
Q ss_pred eEE
Q 012727 302 EIR 304 (457)
Q Consensus 302 ~~~ 304 (457)
...
T Consensus 191 ~~~ 193 (196)
T 3gsl_A 191 NAE 193 (196)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 187
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}
Probab=98.41 E-value=4.8e-07 Score=83.58 Aligned_cols=63 Identities=27% Similarity=0.425 Sum_probs=55.9
Q ss_pred CceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEE
Q 012727 241 AGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIR 304 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~ 304 (457)
.+++|..|.++|||+++| |++||+|++|||+++.+++..++.+.++. .++.+.|++.|+++.+
T Consensus 135 ~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~~v~l~v~R~~~~~ 198 (200)
T 2qt5_A 135 RPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQ-CGQEATLLIEYDVSVM 198 (200)
T ss_dssp EEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHT-TCSEEEEEEEEEEEC-
T ss_pred CCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc-CCCeEEEEEEECCccC
Confidence 478999999999999999 99999999999999997777888888886 8899999999877543
No 188
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=98.39 E-value=2.3e-07 Score=89.92 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=62.0
Q ss_pred eeeeeEEEeecCCCCCCCCceEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 223 LTGVGLSIGYPTASDGSSAGLVVISSMPGGPANR-AGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 223 ~~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~-AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
..|+||.+.... ..+.+++|..|.+||||++ +||++||+|++|||+++.+++..++...++. .|+.|+|+|.|.+
T Consensus 88 ~~glGf~I~gg~---d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~-~g~~V~L~V~R~~ 163 (263)
T 1z87_A 88 AGGLGISIKGGR---ENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK-TGKEVVLEVKYMK 163 (263)
T ss_dssp TCCCCCEEEEET---TTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHH-CCSCCCEEEECCS
T ss_pred CCCEeEEEeecc---CCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhc-CCCeEEEEEEeCc
Confidence 357888875431 1134789999999999999 7999999999999999999988888888875 4778999998765
Q ss_pred e
Q 012727 302 E 302 (457)
Q Consensus 302 ~ 302 (457)
+
T Consensus 164 ~ 164 (263)
T 1z87_A 164 E 164 (263)
T ss_dssp S
T ss_pred c
Confidence 3
No 189
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.38 E-value=8e-07 Score=92.25 Aligned_cols=71 Identities=21% Similarity=0.401 Sum_probs=60.9
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhc-CCCCCcEEEEEEeCCeEEEEEEEeecc
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQ-GPEGSPVELTVRSGAEIRHLALTREKV 313 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~-~~~G~~v~L~v~r~g~~~~vtl~r~~~ 313 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ .++...+. ..+|++++|++.|+|+.++++++....
T Consensus 263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~l~~~ 334 (436)
T 4a8c_A 263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLDTS 334 (436)
T ss_pred cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEECCC
Confidence 578999999999999999999999999999999986 55555554 357899999999999999888876544
No 190
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=98.37 E-value=3.7e-07 Score=95.23 Aligned_cols=73 Identities=23% Similarity=0.389 Sum_probs=61.7
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g 301 (457)
.++|+.+.... +.+++|..|.+||||+++||++||+|++|||+++.+++..++...++. .+|+.++|++.|++
T Consensus 11 ~~lG~~i~gg~-----~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~V~r~g 84 (468)
T 3shw_A 11 DSVGLRLAGGN-----DVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKKK 84 (468)
T ss_dssp SSCCEEEEEET-----TTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEEEEECH
T ss_pred CccceEEEccC-----cCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence 45777764321 357999999999999999999999999999999999888888888875 48899999998865
No 191
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A
Probab=98.37 E-value=4.3e-07 Score=84.88 Aligned_cols=67 Identities=22% Similarity=0.286 Sum_probs=54.4
Q ss_pred CceEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC--eEEEEEEEe
Q 012727 241 AGLVVISSMPGGPANRAGILS-GDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA--EIRHLALTR 310 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~-GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g--~~~~vtl~r 310 (457)
.+++|..|.++|||++|||++ ||+|++|||+ +.++ +++.+.+...+|+.+.|++.|++ +.+++++++
T Consensus 112 ~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~--~~l~~~l~~~~g~~v~l~v~r~~~~~~~~v~l~p 181 (209)
T 3rle_A 112 NVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNES--EDLFSLIETHEAKPLKLYVYNTDTDNCREVIITP 181 (209)
T ss_dssp SCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSS--SCHHHHHHHTTTSCEEEEEEETTTTEEEEEEECC
T ss_pred cceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCH--HHHHHHHHhCCCCeEEEEEEECCceEEEEEEEEe
Confidence 578999999999999999999 9999999998 7765 45555555457899999998864 456666655
No 192
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.35 E-value=7.9e-07 Score=97.94 Aligned_cols=86 Identities=27% Similarity=0.432 Sum_probs=67.2
Q ss_pred eeeeEEEeecCCC--CCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 224 TGVGLSIGYPTAS--DGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 224 ~glGi~~~~~~~~--~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
.|+|+.+....+. ...+.+++|..|.+||||+++| |++||+|++|||+++.+++..++...++. .|+.++|+|.|+
T Consensus 70 ~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~-~g~~v~l~v~R~ 148 (721)
T 2xkx_A 70 SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE-AGSIVRLYVMRR 148 (721)
T ss_pred CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHhhc-cccccceEEEec
Confidence 5889988542110 0124578999999999999999 99999999999999999987788777764 688999999887
Q ss_pred Ce----EEEEEEEe
Q 012727 301 AE----IRHLALTR 310 (457)
Q Consensus 301 g~----~~~vtl~r 310 (457)
+. ..++++.+
T Consensus 149 ~~~~~~~~~v~l~k 162 (721)
T 2xkx_A 149 KPPAEKVMEIKLIK 162 (721)
T ss_pred ccccccceeeeeee
Confidence 63 35566654
No 193
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=98.25 E-value=1.2e-07 Score=94.92 Aligned_cols=68 Identities=28% Similarity=0.488 Sum_probs=0.0
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
.+++|..|.++|||++|||++||+|++|||+++.++ .++...++ .|++++|++.|+|+.++++++...
T Consensus 254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~--~~~~v~l~v~R~g~~~~~~v~p~~ 321 (332)
T 3num_A 254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSA--NDVSDVIK--RESTLNMVVRRGNEDIMITVIPEE 321 (332)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCH--HHHHHHHh--CCCeEEEEEEECCEEEEEEEEEee
Confidence 578899999999999999999999999999999875 55555554 378899999999998888887643
No 194
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=98.21 E-value=1.4e-06 Score=80.22 Aligned_cols=75 Identities=31% Similarity=0.451 Sum_probs=59.8
Q ss_pred eeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 225 GVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 225 glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
++|+.+...... ....+++|..|.++|||+++| |++||+|++|||+++.+++..++.+.+... ++.+.|++.|++
T Consensus 120 ~lG~~~~~~~~~-~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~-~~~v~l~v~R~~ 195 (196)
T 1p1d_A 120 ELGITISSPSSR-KPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRKDE 195 (196)
T ss_dssp CCCCEEECSCSS-STTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHC-TTCEEEEEECCC
T ss_pred CcCEEEECCCCC-CCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC-CCEEEEEEEeCC
Confidence 467766432111 013578999999999999999 999999999999999987678888888755 889999998875
No 195
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=98.21 E-value=3e-06 Score=87.93 Aligned_cols=67 Identities=22% Similarity=0.379 Sum_probs=58.1
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEe
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.++... ..+.|++.|+++...+++.+
T Consensus 363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~~~~~~~~~ 429 (436)
T 4a8c_A 363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNESIYLLMRL 429 (436)
T ss_pred CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCC-CeEEEEEEECCEEEEEEEEe
Confidence 478999999999999999999999999999999875 77777777544 48999999999888777664
No 196
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=98.19 E-value=2.3e-06 Score=89.22 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=57.6
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl 308 (457)
.+++|.+|.++|||+++||++||+|++|||+++.++ +++.+.+.. .++.+.|++.|+++...+++
T Consensus 386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~~--~~~~~~l~~-~~~~v~l~v~R~g~~~~v~l 450 (451)
T 3pv2_A 386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTDV--KSLQTIAQE-KKKELLVQVLRGPGSMYLLV 450 (451)
T ss_dssp EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHTTS-SCSCEEEEEEETTEEEEEEE
T ss_pred CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHhc-CCCeEEEEEEECCEEEEEEe
Confidence 478999999999999999999999999999999875 777777765 67899999999998877765
No 197
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=98.12 E-value=7.9e-07 Score=92.61 Aligned_cols=68 Identities=25% Similarity=0.387 Sum_probs=58.3
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcC-CCCCcEEEEEEeCCeEEEEEEEe
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQG-PEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~-~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
.+++|..|.++|||++|||++||+|++|||+++.++ .++...+.. .+|++++|++.|+|+.++++++.
T Consensus 286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g~~~~~~v~~ 354 (448)
T 1ky9_A 286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKQVNVNLEL 354 (448)
T ss_dssp CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSS--HHHHHHTTSSBTTCCCEEEEESSSCEEECCCC-
T ss_pred CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEEEEEEEEE
Confidence 578999999999999999999999999999999987 566666654 57899999999999877766654
No 198
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=98.04 E-value=1.2e-05 Score=85.25 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=57.1
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCC--------HHHHHHHh-cCCCCCcEEEEEEeCCeEEEEEEEe
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG--------IYDAAERL-QGPEGSPVELTVRSGAEIRHLALTR 310 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~--------~~~~~~~l-~~~~G~~v~L~v~r~g~~~~vtl~r 310 (457)
..+++|..|.++|||+++ |++||+|++|||++|.... ...+...+ ...+|++++|+|.|+|+.++++++.
T Consensus 276 ~~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~Gk~~~v~Vtl 354 (539)
T 4fln_A 276 NEGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAGEHKKVQVVL 354 (539)
T ss_dssp SBCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETTEEEEEEEEC
T ss_pred cCceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECCEEEEEEEEE
Confidence 468999999999999876 9999999999999996531 00112222 3468999999999999999999886
Q ss_pred ec
Q 012727 311 EK 312 (457)
Q Consensus 311 ~~ 312 (457)
..
T Consensus 355 ~~ 356 (539)
T 4fln_A 355 RP 356 (539)
T ss_dssp BC
T ss_pred cc
Confidence 53
No 199
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.77 E-value=4.6e-05 Score=83.90 Aligned_cols=73 Identities=26% Similarity=0.441 Sum_probs=59.4
Q ss_pred eeeeEEEeecCCCCCCCCceEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCC
Q 012727 224 TGVGLSIGYPTASDGSSAGLVVISSMPGGPANRAG-ILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGA 301 (457)
Q Consensus 224 ~glGi~~~~~~~~~~~~~~vvV~~V~~gSpA~~AG-L~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g 301 (457)
.++|+.+.... ...+++|..|.+||||+++| |++||+|++|||+++.+.+.+++...++. .+..+.|.+.|+.
T Consensus 318 ~~lG~~i~~~~----~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~-~~~~v~L~v~r~~ 391 (721)
T 2xkx_A 318 TGLGFNIVGGE----DGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKN-AGQTVTIIAQYKP 391 (721)
T ss_pred CCccEEEeccC----CCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHh-cCCeEEEEEEeCc
Confidence 35777764321 13579999999999999999 99999999999999998877888888875 4778999987754
No 200
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=97.74 E-value=4.1e-06 Score=87.23 Aligned_cols=65 Identities=23% Similarity=0.424 Sum_probs=0.0
Q ss_pred CceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEE
Q 012727 241 AGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLAL 308 (457)
Q Consensus 241 ~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl 308 (457)
.+++|..|.++|||+++||++||+|++|||+++.++ +++.+.+....+ .+.|++.|+++.+.+++
T Consensus 383 ~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~~--~~l~~~l~~~~~-~v~l~v~R~g~~~~~~l 447 (448)
T 1ky9_A 383 QGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNI--AELRKVLDSKPS-VLALNIQRGDSTIYLLM 447 (448)
T ss_dssp --------------------------------------------------------------------
T ss_pred CeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHcCCC-eEEEEEEECCEEEEEEe
Confidence 478899999999999999999999999999999875 566666665444 88899999887766554
No 201
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A
Probab=97.32 E-value=0.00029 Score=62.80 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=40.1
Q ss_pred EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEE
Q 012727 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTV 297 (457)
Q Consensus 244 vV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v 297 (457)
+|..+.++|||+++||++||+|++|||.++.++..+.+.-.+. ..|+.+.+++
T Consensus 110 ~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~-r~g~~~~l~v 162 (166)
T 1w9e_A 110 KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITI 162 (166)
T ss_dssp EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHH-HSCSEEEEEE
T ss_pred EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHh-hCCCEEEEEE
Confidence 7899999999999999999999999999999886544433332 2344444443
No 202
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A
Probab=97.25 E-value=4.2e-05 Score=78.07 Aligned_cols=56 Identities=21% Similarity=0.338 Sum_probs=0.0
Q ss_pred EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeC
Q 012727 244 VVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSG 300 (457)
Q Consensus 244 vV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~ 300 (457)
+|..|.++|||+++||++||+|++|||+++.+.+.+++...++. .+..+.|++.+.
T Consensus 318 ~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~-~~~~v~L~V~p~ 373 (388)
T 3suz_A 318 IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSN-SVGEIHMKTMPA 373 (388)
T ss_dssp ---------------------------------------------------------
T ss_pred EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHh-CCCeEEEEEEec
Confidence 78899999999999999999999999999987666777777754 566777776543
No 203
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=95.75 E-value=0.015 Score=61.53 Aligned_cols=68 Identities=7% Similarity=0.038 Sum_probs=53.4
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHhcCCCCCcEEEEEEeCCeEEEEEEEeec
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMGIYDAAERLQGPEGSPVELTVRSGAEIRHLALTREK 312 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~~~~~~~~l~~~~G~~v~L~v~r~g~~~~vtl~r~~ 312 (457)
..+++|+.|.++++|..+|+++||+|++|||++|.+. .++.+.+....++.+.+.+. +++ .+.+.+.+
T Consensus 414 ~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~--~~l~~~l~~~k~~~l~~~~~-~~~--~ivL~~~~ 481 (539)
T 4fln_A 414 EQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNI--HHLAHLIDMCKDKYLVFEFE-DNY--VAVLEREA 481 (539)
T ss_dssp CCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSH--HHHHHHHHTCCSSEEEEEET-TSC--EEEEEHHH
T ss_pred ceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCH--HHHHHHHHHcCCCeEEEEEC-CCE--EEEEEHHH
Confidence 3478899999999999999999999999999999984 78888887766666666654 333 34555543
No 204
>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A
Probab=91.85 E-value=0.51 Score=44.28 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=62.3
Q ss_pred CCcEEEEEEec-cCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCC
Q 012727 332 SPRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTD 410 (457)
Q Consensus 332 ~~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~ 410 (457)
.+++..|.+.. ++....+.+.+.+..+.+.+++.|||.+ +-|||++..+..+...+.
T Consensus 7 ~~~V~vI~i~g~I~~~~~~~l~~~l~~a~~~~~~~Ivl~i-nspGG~v~~~~~i~~~i~--------------------- 64 (230)
T 3viv_A 7 KNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIEL-DTPGGRADAMMNIVQRIQ--------------------- 64 (230)
T ss_dssp CCEEEEEEEESCBCHHHHHHHHHHHHHHHHTTCSEEEEEE-EBSCEEHHHHHHHHHHHH---------------------
T ss_pred CCeEEEEEEeCEECHHHHHHHHHHHHHHhcCCCCEEEEEE-eCCCcCHHHHHHHHHHHH---------------------
Confidence 35788888876 4555677888888888777899999987 478999888877777653
Q ss_pred CCCCCCCCCcEEEEE---cCCCcchHHHHHHHHh
Q 012727 411 GTDALAASEPLAVLV---NKGTASASEILAGALK 441 (457)
Q Consensus 411 ~~~~~~~~gpvvVLv---n~~TaSaaE~~a~~lk 441 (457)
..++|++..+ ++..+|++-.++.+-.
T Consensus 65 -----~~~~PVia~v~p~~G~AasaG~~ia~a~d 93 (230)
T 3viv_A 65 -----QSKIPVIIYVYPPGASAASAGTYIALGSH 93 (230)
T ss_dssp -----TCSSCEEEEECSTTCEEETHHHHHHHTSS
T ss_pred -----hCCCCEEEEEecCCCEEhHHHHHHHHhcC
Confidence 1356788888 8888888777776543
No 205
>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A
Probab=86.73 E-value=1 Score=40.76 Aligned_cols=81 Identities=15% Similarity=0.208 Sum_probs=58.9
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
.++.+|. ....+...+.+.+.|..+.+ .+.+.|+|.+ +-|||+...+..|.+.+..
T Consensus 26 ~rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------- 82 (193)
T 1yg6_A 26 ERVIFLT-GQVEDHMANLIVAQMLFLEAENPEKDIYLYI-NSPGGVITAGMSIYDTMQF--------------------- 82 (193)
T ss_dssp TTEEEEE-SSBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEc-CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHHh---------------------
Confidence 4666654 22344567788888877754 4589999999 7789999999888887631
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHHh
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGALK 441 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk 441 (457)
.+.||++.+++.++|++-+++.+-.
T Consensus 83 -----~~~pV~~~v~g~AaS~g~~Ia~ag~ 107 (193)
T 1yg6_A 83 -----IKPDVSTICMGQAASMGAFLLTAGA 107 (193)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTSC
T ss_pred -----cCCCEEEEEeeeHHHHHHHHHHCCC
Confidence 2357888888888888888777643
No 206
>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1
Probab=86.42 E-value=0.87 Score=42.21 Aligned_cols=82 Identities=18% Similarity=0.225 Sum_probs=59.3
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
++|.+|. ...++...+.+.+.|..+.+ .+.++|+|.+ +-|||++..+..|.+.+.
T Consensus 45 ~rii~l~-g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~I-nSPGG~v~ag~~I~~~i~---------------------- 100 (218)
T 1y7o_A 45 DRIIMLT-GPVEDNMANSVIAQLLFLDAQDSTKDIYLYV-NTPGGSVSAGLAIVDTMN---------------------- 100 (218)
T ss_dssp TTEEEEE-SCBCHHHHHHHHHHHHHHHHHCTTSCEEEEE-EECCBCHHHHHHHHHHHH----------------------
T ss_pred CCEEEEe-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECcCCCHHHHHHHHHHHH----------------------
Confidence 3676664 33455567788888887765 3589999999 778999998888877652
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHHhc
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGALKD 442 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~lk~ 442 (457)
..+.||++.+++.++|++-.++.+-..
T Consensus 101 ----~~~~pV~t~v~G~AaS~G~~Ia~a~d~ 127 (218)
T 1y7o_A 101 ----FIKADVQTIVMGMAASMGTVIASSGAK 127 (218)
T ss_dssp ----HSSSCEEEEEEEEEETHHHHHHTTSCT
T ss_pred ----hcCCCEEEEEccEeHHHHHHHHHcCCc
Confidence 124578888888888888777766443
No 207
>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A
Probab=83.75 E-value=1 Score=41.44 Aligned_cols=71 Identities=21% Similarity=0.223 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCCCCCcEE
Q 012727 344 NQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALAASEPLA 422 (457)
Q Consensus 344 ~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gpvv 422 (457)
++...+.+.+.|..+.+ .+.++|+|.+ +-|||+...+..|.+.+.. .+.||+
T Consensus 37 ~~~~a~~i~~~L~~~~~~~~~k~I~l~I-nSPGG~v~a~~~I~~~i~~--------------------------~~~pV~ 89 (208)
T 2cby_A 37 NDEIANRLCAQILLLAAEDASKDISLYI-NSPGGSISAGMAIYDTMVL--------------------------APCDIA 89 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH--------------------------CSSCEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh--------------------------cCCCEE
Confidence 34567788888877764 4689999999 7789999998888887631 246788
Q ss_pred EEEcCCCcchHHHHHHHHh
Q 012727 423 VLVNKGTASASEILAGALK 441 (457)
Q Consensus 423 VLvn~~TaSaaE~~a~~lk 441 (457)
+.+++.++|++-.++.+-.
T Consensus 90 ~~v~g~AaS~g~~Ia~agd 108 (208)
T 2cby_A 90 TYAMGMAASMGEFLLAAGT 108 (208)
T ss_dssp EEEEEEEETHHHHHHHTSC
T ss_pred EEECcEeHHHHHHHHhCCC
Confidence 8888999999888887754
No 208
>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1
Probab=80.92 E-value=1.4 Score=40.77 Aligned_cols=81 Identities=19% Similarity=0.268 Sum_probs=56.4
Q ss_pred cEEEEEEeccCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCC
Q 012727 334 RIGYIKLTSFNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTD 413 (457)
Q Consensus 334 ~igYi~i~sF~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (457)
.+.||. ....+...+.+.+.|..+...+.+.|+|.+ +-|||++..+..|.+.+..
T Consensus 40 riI~l~-G~I~~~~a~~i~~~L~~l~~~~~k~I~l~I-NSPGGsv~a~~~I~~~i~~----------------------- 94 (215)
T 2f6i_A 40 RIIYLT-DEINKKTADELISQLLYLDNINHNDIKIYI-NSPGGSINEGLAILDIFNY----------------------- 94 (215)
T ss_dssp TEEEEC-SCBCHHHHHHHHHHHHHHHHHCCSCEEEEE-EECCBCHHHHHHHHHHHHH-----------------------
T ss_pred eEEEEc-cEECHHHHHHHHHHHHHHHhCCCCcEEEEE-ECCCCCHHHHHHHHHHHHh-----------------------
Confidence 554443 122344567788888777654448999998 7789999999888887631
Q ss_pred CCCCCCcEEEEEcCCCcchHHHHHHHHhc
Q 012727 414 ALAASEPLAVLVNKGTASASEILAGALKD 442 (457)
Q Consensus 414 ~~~~~gpvvVLvn~~TaSaaE~~a~~lk~ 442 (457)
.+.||++.+.+.++|++-+++.+-..
T Consensus 95 ---~~~pV~t~v~g~AAS~g~~Ia~agd~ 120 (215)
T 2f6i_A 95 ---IKSDIQTISFGLVASMASVILASGKK 120 (215)
T ss_dssp ---SSSCEEEEEEEEECHHHHHHHHTSCT
T ss_pred ---cCCCEEEEEeeEhHhHHHHHHHcCCc
Confidence 23467788888888888877776543
No 209
>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1
Probab=77.51 E-value=3.6 Score=37.53 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=55.6
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDG 411 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~ 411 (457)
.+|-||. ...++...+.+.+.|..+.+ .+.+.++|-+ +-|||++..+..|.+.+..
T Consensus 30 ~riI~l~-g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-NSpGG~v~~~~~I~~~i~~--------------------- 86 (201)
T 3p2l_A 30 ERIVFLN-GEVNDHSANLVIAQLLFLESEDPDKDIYFYI-NSPGGMVTAGMGVYDTMQF--------------------- 86 (201)
T ss_dssp TTEEEEE-SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH---------------------
T ss_pred CCEEEEc-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHH---------------------
Confidence 3665554 22345567788888877764 3578999988 7789999999888887632
Q ss_pred CCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 412 TDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 412 ~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
.+.|+++.+.+.++|++-+++.+-
T Consensus 87 -----~~~~v~t~~~G~AaS~g~~i~~ag 110 (201)
T 3p2l_A 87 -----IKPDVSTICIGLAASMGSLLLAGG 110 (201)
T ss_dssp -----SSSCEEEEEEEEEETHHHHHHHTS
T ss_pred -----hCCCeEEEEcCEehhHHHHHHHcC
Confidence 134677777777777777666553
No 210
>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A
Probab=76.28 E-value=2.5 Score=38.75 Aligned_cols=80 Identities=18% Similarity=0.220 Sum_probs=56.9
Q ss_pred cEEEEEEeccCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCC
Q 012727 334 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 412 (457)
Q Consensus 334 ~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 412 (457)
+|-||. ...++..++.+.+.|..+.+ .+.+.|+|.+ +-|||++..+..|.+.+..
T Consensus 28 riI~l~-g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~I-nSPGG~v~~~~~I~~~i~~---------------------- 83 (203)
T 3qwd_A 28 RIIMLG-SQIDDNVANSIVSQLLFLQAQDSEKDIYLYI-NSPGGSVTAGFAIYDTIQH---------------------- 83 (203)
T ss_dssp TEEEEC-SCBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH----------------------
T ss_pred CEEEEc-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCHHHHHHHHHHHHH----------------------
Confidence 565553 22344567788888877765 3578999988 6789999998888887631
Q ss_pred CCCCCCCcEEEEEcCCCcchHHHHHHHHh
Q 012727 413 DALAASEPLAVLVNKGTASASEILAGALK 441 (457)
Q Consensus 413 ~~~~~~gpvvVLvn~~TaSaaE~~a~~lk 441 (457)
.+.||++.+.+.++|++-.++.+-.
T Consensus 84 ----~~~~V~t~~~G~AaSag~~i~~ag~ 108 (203)
T 3qwd_A 84 ----IKPDVQTICIGMAASMGSFLLAAGA 108 (203)
T ss_dssp ----SSSCEEEEEEEEEETHHHHHHHTSC
T ss_pred ----hcCCcEEEEeeeehhHHHHHHHcCC
Confidence 2457888888888888877776643
No 211
>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1
Probab=69.59 E-value=9.1 Score=36.70 Aligned_cols=80 Identities=18% Similarity=0.239 Sum_probs=55.1
Q ss_pred cEEEEEEeccCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCC
Q 012727 334 RIGYIKLTSFNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGT 412 (457)
Q Consensus 334 ~igYi~i~sF~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 412 (457)
+|-+|. ..-++...+.+.+.|..+.. .+.+.|+|.+ +-|||++..+..|.+.+..
T Consensus 83 rII~l~-G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~I-NSPGGsV~ag~aIyd~I~~---------------------- 138 (277)
T 1tg6_A 83 RIVCVM-GPIDDSVASLVIAQLLFLQSESNKKPIHMYI-NSPGGVVTAGLAIYDTMQY---------------------- 138 (277)
T ss_dssp TEEEEE-SSBCHHHHHHHHHHHHHHHHHCSSSCEEEEE-EECCBCHHHHHHHHHHHHH----------------------
T ss_pred cEEEEc-CEECHHHHHHHHHHHHHHHhcCCCCCEEEEE-ECCCCCHHHHHHHHHHHHh----------------------
Confidence 554443 22344466777777776644 4578999998 7789999999888887631
Q ss_pred CCCCCCCcEEEEEcCCCcchHHHHHHHHh
Q 012727 413 DALAASEPLAVLVNKGTASASEILAGALK 441 (457)
Q Consensus 413 ~~~~~~gpvvVLvn~~TaSaaE~~a~~lk 441 (457)
.+.||++.+.+..+|++-+++.+-.
T Consensus 139 ----~k~pV~t~v~G~AASaG~~Ia~Agd 163 (277)
T 1tg6_A 139 ----ILNPICTWCVGQAASMGSLLLAAGT 163 (277)
T ss_dssp ----SCSCEEEEEEEEEETHHHHHHHTSC
T ss_pred ----cCCCEEEEEccEeHHHHHHHHHCCC
Confidence 2346777777888888777766543
No 212
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=52.64 E-value=13 Score=34.59 Aligned_cols=68 Identities=21% Similarity=0.272 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCceeeEeCCCCCCCC-CCCcEEEEE
Q 012727 348 SGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRDIYDTDGTDALA-ASEPLAVLV 425 (457)
Q Consensus 348 ~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gpvvVLv 425 (457)
.+++.++++++.+ .++++|||+.-. +||++..+..+...+.. + .. ..+||+..+
T Consensus 31 ~~~l~~~l~~a~~d~~v~~ivL~~~s-~Gg~~~~~~~i~~~l~~----------------~-------~~~~~kPVia~v 86 (240)
T 3rst_A 31 HRTFLKNLERAKDDKTVKGIVLKVNS-PGGGVYESAEIHKKLEE----------------I-------KKETKKPIYVSM 86 (240)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEEEEEE-CCBCHHHHHHHHHHHHH----------------H-------HHHHCCCEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEEEecC-CCCCHHHHHHHHHHHHH----------------H-------HHhCCCeEEEEE
Confidence 5688888888765 468999998864 78888776665544321 0 01 256777777
Q ss_pred cCCCcchHHHHHHH
Q 012727 426 NKGTASASEILAGA 439 (457)
Q Consensus 426 n~~TaSaaE~~a~~ 439 (457)
++.++|++=.+|.+
T Consensus 87 ~g~a~~gG~~lA~a 100 (240)
T 3rst_A 87 GSMAASGGYYISTA 100 (240)
T ss_dssp EEEEETHHHHHHTT
T ss_pred CCeehHhHHHHHHh
Confidence 77777776555544
No 213
>1j7x_A IRBP, interphotoreceptor retinoid-binding protein; beta BETA alpha spiral, transport protein; 1.80A {Xenopus laevis} SCOP: c.14.1.2
Probab=44.93 E-value=47 Score=31.69 Aligned_cols=59 Identities=8% Similarity=0.057 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCChHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh-cCCCCcccc
Q 012727 145 NRLFLEAWRTIDRAYVDKTFNGQSWFRYRENAL--RNEPMNTREETYMAIRKMLAT-LDDPFTRFL 207 (457)
Q Consensus 145 ~~~fd~v~r~l~~~Y~d~~~~g~dw~~~~~~~~--~~~~~~~~~ef~~ai~~~l~~-L~DpHt~~l 207 (457)
...++.++..|.++|+.++ ++ .++.+.+. +.....+.+++...+..++.. ++|+|..+.
T Consensus 5 ~~vv~~~~~~l~~~Y~f~~-~~---~a~~~~l~~~~~~~i~~~~~La~~Lt~~lq~~~~D~hl~v~ 66 (302)
T 1j7x_A 5 THVLHQLCDILANNYAFSE-RI---PTLLQHLPNLDYSTVISEEDIAAKLNYELQSLTEDPRLVLK 66 (302)
T ss_dssp HHHHHHHHHHHHHHCSCGG-GH---HHHHHHGGGSCCSSCCSHHHHHHHHHHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHHHHHHhCCCHH-HH---HHHHHHHhcCCcccCCCHHHHHHHHHhhhhhccCCCcEEEE
Confidence 3568999999999999875 22 24444432 334567789999999999988 599998653
No 214
>3bl4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 2.20A {Arthrobacter SP}
Probab=43.00 E-value=27 Score=29.17 Aligned_cols=49 Identities=6% Similarity=0.102 Sum_probs=36.3
Q ss_pred CCCcEEEEEEec---cCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHH
Q 012727 331 SSPRIGYIKLTS---FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPE 380 (457)
Q Consensus 331 ~~~~igYi~i~s---F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~ 380 (457)
.+++|.|+++.. ++...++.+...+.++...+.-.+++|+|.. +....+
T Consensus 17 ~~dGIl~~~~~~~~~i~~e~A~~~~~~~~~l~~~~~~~vL~D~r~~-~~~s~~ 68 (124)
T 3bl4_A 17 GGDGILRLTWPRGAAITAADAERAMLRVNQLCGDDRHPMLVDMATT-ADVSRG 68 (124)
T ss_dssp CTTSCEEEECSSSSCCCHHHHHHHHHHHHHHHTTCCEEEEEECCSS-THHHHH
T ss_pred cCCCEEEEEEcCCCccCHHHHHHHHHHHHHHhCCCceEEEEEcccc-cCCCHH
Confidence 347999999987 5666677777777777766677999999998 433333
No 215
>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A
Probab=36.20 E-value=13 Score=39.36 Aligned_cols=83 Identities=20% Similarity=0.206 Sum_probs=53.4
Q ss_pred CcEEEEEEecc--------CcchHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCc
Q 012727 333 PRIGYIKLTSF--------NQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGV 403 (457)
Q Consensus 333 ~~igYi~i~sF--------~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~ 403 (457)
++|+.|.++.= +....+++.++|+++.+. ++++|||..-. +||++..+..+...+..
T Consensus 301 ~~VavI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~s-pGG~~~~~~~i~~~i~~------------- 366 (593)
T 3bf0_A 301 DSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNS-PGGSVTASEVIRAELAA------------- 366 (593)
T ss_dssp CEEEEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEE-EEECHHHHHHHHHHHHH-------------
T ss_pred CCEEEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecC-CCCCHHHHHHHHHHHHH-------------
Confidence 46777777542 222467889999888654 68899987754 68888765444333210
Q ss_pred eeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 404 RDIYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 404 ~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
+ ...++||++.+++.++|++=.++.+
T Consensus 367 ---l-------~~~~kPVia~v~g~AasgG~~iA~a 392 (593)
T 3bf0_A 367 ---A-------RAAGKPVVVSMGGMAASGGYWISTP 392 (593)
T ss_dssp ---H-------HHTTCCEEEEEEEEEETHHHHTTTT
T ss_pred ---H-------HhCCCCEEEEECCChHHHHHHHHHh
Confidence 0 0135678888888888887666554
No 216
>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}
Probab=35.32 E-value=1.4e+02 Score=27.69 Aligned_cols=96 Identities=19% Similarity=0.092 Sum_probs=56.9
Q ss_pred CcEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEec---CCCCCCChHHHHHHHHhhhCCCcEEEEEcCCC
Q 012727 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDL---RDNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 402 (457)
Q Consensus 333 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDL---R~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~ 402 (457)
++|++|.++. ++....+++.++++.+.+ ..++.+||-= .+..|+++.+... .. ..+..-+ ...
T Consensus 17 ~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~---~~-~~~~~~~---~~~ 89 (265)
T 3swx_A 17 GYVLVIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAA---EI-QGGASLT---PEG 89 (265)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHH---HH-C--CCCC---CTT
T ss_pred CCEEEEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhh---cc-cchhHHH---HHH
Confidence 4677777754 444567788888888865 4689999832 1556888765322 11 1111000 000
Q ss_pred ceeeEeCCCCCC-CCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 403 VRDIYDTDGTDA-LAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 403 ~~~~~~~~~~~~-~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
..+.+. .- ...++|+|..+|+.+..++-.++.+
T Consensus 90 ~~~~~~----~l~~~~~kPvIAav~G~a~GgG~~lala 123 (265)
T 3swx_A 90 GINPWQ----VDGRQLSKPLLVAVHGKVLTLGIELALA 123 (265)
T ss_dssp CCCTTC----CSSCCCSSCEEEEECSEEETHHHHHHHH
T ss_pred HHHHHH----HHHHhCCCCEEEEEcCeeehHHHHHHHH
Confidence 011111 11 3578999999999999988777665
No 217
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=35.23 E-value=59 Score=29.89 Aligned_cols=53 Identities=25% Similarity=0.338 Sum_probs=37.2
Q ss_pred CCceEEEEecCCCcccccCCCCCCEEEEECCEecCCCC---HHHHHHHhcCCCCCcEEEEEE
Q 012727 240 SAGLVVISSMPGGPANRAGILSGDVILAIDDTSTESMG---IYDAAERLQGPEGSPVELTVR 298 (457)
Q Consensus 240 ~~~vvV~~V~~gSpA~~AGL~~GD~IlaIdG~~v~~~~---~~~~~~~l~~~~G~~v~L~v~ 298 (457)
+++++|.. +++.|++.|..++++||.++.+-. -.++...+.++...++-+...
T Consensus 44 ~~~~~v~~------~~~d~~~~~~~~~~~ng~~~~~~~~~d~~~v~~~iigk~N~PLyir~f 99 (219)
T 2j3t_D 44 DERVLVAF------GQRDGIRVGHAVLAINGMDVNGRYTADGKEVLEYLGNPANYPVSIRFG 99 (219)
T ss_dssp SSSEEEEE------CCCTTCCTTCEEEEETTEECBTTBCTTSSBHHHHTTCGGGCSEEEEEE
T ss_pred cceeEEee------cccCCccccceeeecCCccCCCcccccCceeeeeeecCCCCceEEEec
Confidence 46777765 357789999999999999998641 124556666666666666544
No 218
>2kln_A Probable sulphate-transport transmembrane protein; SLC26, sulfate, antisigma factor antagonist, ensemble structures, transport protein; NMR {Mycobacterium bovis}
Probab=34.66 E-value=50 Score=26.87 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=42.1
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHHHhhC---CCCEEEEecCCCCCCC---hHHHHHHHHhhhCCCcEEEEE
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDTLRSN---SVNAFVLDLRDNSGGL---FPEGIEIAKIWLDKGVIVYIC 398 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~---~~~~LIlDLR~N~GG~---~~~a~~l~~~f~~~~~~~~~~ 398 (457)
+++..+++.. +.-.+.+.+++.+.++... +.+.||||+++=.-=+ +.....+...+-..+..+...
T Consensus 14 ~~v~v~~l~G~L~f~~a~~~~~~l~~~~~~~~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l~ 86 (130)
T 2kln_A 14 PGLVVYRYDAPLCFANAEDFRRRALTVVDQDPGQVEWFVLNAESNVEVDLTALDALDQLRTELLRRGIVFAMA 86 (130)
T ss_dssp SSEEEEECCSCCBTTTHHHHHHHHHHHTTSSSSCCEEEEEECSCCSSSBCSTTTHHHHHHHHHHTTTEEEEEE
T ss_pred CCEEEEEECCceEechHHHHHHHHHHHHhcCCCCceEEEEECCCCChhhHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 4677788765 3345678898888876544 5789999998765332 223334555555566555443
No 219
>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A
Probab=32.35 E-value=99 Score=28.71 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=53.2
Q ss_pred CcEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEecC---CCCCCChHHHHHHHHhhhCCCcEEEEEcCCC
Q 012727 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLR---DNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 402 (457)
Q Consensus 333 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR---~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~ 402 (457)
++|++|.++. ++....+++.++++++.+ .+++.+||-=. +..|+++.+.... ..+
T Consensus 17 ~~v~~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~--------~~~------- 81 (256)
T 3pe8_A 17 DRVRTLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDT--------TEL------- 81 (256)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------------------
T ss_pred CCEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhh--------HHH-------
Confidence 4677777765 344466788888888865 46899999422 2335554331110 000
Q ss_pred ceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 403 VRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 403 ~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
.... ..-...++|+|..+|+.+..++-.++.+-
T Consensus 82 -~~~~----~~l~~~~kPvIAav~G~a~GgG~~lalac 114 (256)
T 3pe8_A 82 -PDIS----PKWPDMTKPVIGAINGAAVTGGLELALYC 114 (256)
T ss_dssp ----C----CCCCCCSSCEEEEECSEEETHHHHHHHHS
T ss_pred -HHHH----HHHHhCCCCEEEEECCeeechHHHHHHhC
Confidence 0000 11235689999999999999988777663
No 220
>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}
Probab=31.52 E-value=72 Score=29.95 Aligned_cols=102 Identities=11% Similarity=0.088 Sum_probs=50.7
Q ss_pred CcEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEecCCCCCCChHHHHHHHHhhhCCCcEEEEEcCCCcee
Q 012727 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLRDNSGGLFPEGIEIAKIWLDKGVIVYICDSRGVRD 405 (457)
Q Consensus 333 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~~~ 405 (457)
++|++|.++. ++....+++.++++++.+ ..++.+|| ++++ +.+..+.++....-......+... .....
T Consensus 28 ~~v~~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g-~~F~aG~Dl~~~~~~~~~~~~~~~-~~~~~ 103 (278)
T 4f47_A 28 GHTLIVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL--TGAG-GYFCAGMDLKAATKKPPGDSFKDG-SYDPS 103 (278)
T ss_dssp TTEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE--EEST-TCCC-----------------------CTT
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCC-CcccCCcChHhhhccchhhhHHHH-HHHHH
Confidence 4677777754 444567788888888865 46899998 3333 233333333221100000000000 00000
Q ss_pred eEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 406 IYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 406 ~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
.+..- ......++|+|..+|+.+..++-.++.+
T Consensus 104 ~~~~l-~~~~~~~kPvIAav~G~a~GgG~~lala 136 (278)
T 4f47_A 104 RIDAL-LKGRRLKKPLIAAVEGPAIAGGTEILQG 136 (278)
T ss_dssp CBTTT-TBSCCCSSCEEEEECSEEETHHHHHHTT
T ss_pred HHHHH-HHhcCCCCCEEEEECCEEehHHHHHHHh
Confidence 11100 0001578999999999999998776654
No 221
>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A
Probab=28.80 E-value=51 Score=29.95 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=53.3
Q ss_pred CcEEEEEEeccCcchHHHHHHHHHHHhhC-CCCEEEEecCCCCC----------CChHHHHHHHHhhhCCCcEEEEEcCC
Q 012727 333 PRIGYIKLTSFNQNASGAVREAIDTLRSN-SVNAFVLDLRDNSG----------GLFPEGIEIAKIWLDKGVIVYICDSR 401 (457)
Q Consensus 333 ~~igYi~i~sF~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~G----------G~~~~a~~l~~~f~~~~~~~~~~~~~ 401 (457)
++|-||. ...++..++.+...|..|... ..+.|.|=+ +-|| |++..+..|.+.+-.
T Consensus 28 ~Riifl~-~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyI-NSpG~~~~~~~~~~G~v~aglaIyd~m~~----------- 94 (205)
T 4gm2_A 28 KRIIFLS-SPIYPHISEQIISQLLYLEYESKRKPIHLYI-NSTGDIDNNKIINLNGITDVISIVDVINY----------- 94 (205)
T ss_dssp TTEEEEC-SCCCHHHHHHHHHHHHHHHHHCTTCCEEEEE-EECTTEETTEESCTTHHHHHHHHHHHHHH-----------
T ss_pred CCEEEEC-CEEcHHHHHHHHHHHHHHHhcCCCCCEEEEE-eCCCCCCcCCCCCCCCHHHHHHHHHHHHh-----------
Confidence 4775643 223445677777777777643 466777766 5678 999998888887621
Q ss_pred CceeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHHH
Q 012727 402 GVRDIYDTDGTDALAASEPLAVLVNKGTASASEILAGAL 440 (457)
Q Consensus 402 ~~~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~l 440 (457)
.+.||.+++.+..+|++-+++.+=
T Consensus 95 ---------------~~~~V~t~~~G~AaS~as~il~aG 118 (205)
T 4gm2_A 95 ---------------ISSDVYTYCLGKAYGIACILASSG 118 (205)
T ss_dssp ---------------SSSCEEEEEEEEEETHHHHHHTTS
T ss_pred ---------------cCCCEEEEEEeeehhHHHHHHhcC
Confidence 245677777777777777766654
No 222
>1th8_B Anti-sigma F factor antagonist; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: c.13.2.1 PDB: 1thn_B* 1tid_B* 1til_B* 1auz_A 1buz_A
Probab=27.61 E-value=64 Score=25.19 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=30.6
Q ss_pred cEEEEEEec-cCcchHHHHHHHHHHHhhCC-CCEEEEecCCCCCCChH
Q 012727 334 RIGYIKLTS-FNQNASGAVREAIDTLRSNS-VNAFVLDLRDNSGGLFP 379 (457)
Q Consensus 334 ~igYi~i~s-F~~~~~~~l~~~l~~l~~~~-~~~LIlDLR~N~GG~~~ 379 (457)
++..+++.. +.....+.+++.+.++...+ .+.+|||+++=.-=+..
T Consensus 12 ~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDss 59 (116)
T 1th8_B 12 DVLIVRLSGELDHHTAEELREQVTDVLENRAIRHIVLNLGQLTFMDSS 59 (116)
T ss_dssp TEEEEEEEEEESHHHHHHHHHHHHHHHHSSCCCEEEEEEEEEEEECHH
T ss_pred CEEEEEEeeeeccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccH
Confidence 556666654 33345677888887765544 78999999876655543
No 223
>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}
Probab=26.09 E-value=2.4e+02 Score=25.89 Aligned_cols=96 Identities=21% Similarity=0.099 Sum_probs=56.0
Q ss_pred CcEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEecC---CCCCCChHHHHHHHHhhhCCCcEEEEEcCCC
Q 012727 333 PRIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLR---DNSGGLFPEGIEIAKIWLDKGVIVYICDSRG 402 (457)
Q Consensus 333 ~~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR---~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~ 402 (457)
++|++|.++. ++....+++.++++++.+ ..++.|||-=. +..|+++.+. ... .+.+..-+ ...
T Consensus 20 ~~v~~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~---~~~-~~~~~~~~---~~~ 92 (258)
T 3lao_A 20 GHLFLIGLDRAGKRNAFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMEL---APK-LAASGFRY---PDG 92 (258)
T ss_dssp TTEEEEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHH---GGG-CBTTBCCC---CTT
T ss_pred CCEEEEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHH---hhc-cchhhHHH---HHH
Confidence 4677777754 334467788888888865 46899998432 3447777542 111 11111000 000
Q ss_pred ceeeEeCCCCCC-CCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 403 VRDIYDTDGTDA-LAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 403 ~~~~~~~~~~~~-~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
..+.+ ..- ...++|+|..+|+.+..++-.++.+
T Consensus 93 ~~~~~----~~l~~~~~kPvIAav~G~a~GgG~~lala 126 (258)
T 3lao_A 93 GVDPW----GVVQPRRSKPLVVAVQGTCWTAGIELMLN 126 (258)
T ss_dssp CCCTT----SCSSSCCCSCEEEEECSEEETHHHHHHHT
T ss_pred HHHHH----HHHHHhCCCCEEEEECCEeEhHHHHHHHh
Confidence 00111 111 3578999999999999988777665
No 224
>2ka5_A Putative anti-sigma factor antagonist TM_1081; termotoga marithima, phosphoprotein, structural GENO PSI-2, protein structure initiative; NMR {Thermotoga maritima} PDB: 3f43_A*
Probab=24.44 E-value=1.7e+02 Score=23.44 Aligned_cols=48 Identities=10% Similarity=-0.010 Sum_probs=34.1
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHH-HhhCCCCEEEEecCCCCCCChHH
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDT-LRSNSVNAFVLDLRDNSGGLFPE 380 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~-l~~~~~~~LIlDLR~N~GG~~~~ 380 (457)
+++..+++.. +...+.+.+++.+.+ +...+.+.+|||+.+=.-=+...
T Consensus 20 ~~~~vv~l~G~Ld~~~a~~l~~~l~~~~~~~~~~~vvlDls~V~~iDSsG 69 (125)
T 2ka5_A 20 DDVVILMPNKELNIENAHLFKKWVFDEFLNKGYNKIFLVLSDVESIDSFS 69 (125)
T ss_dssp SSCEEECCCSCCSGGGTHHHHHHHHHHTTTTTCCEEEEECTTCSCCCHHH
T ss_pred CCEEEEEEecEEecccHHHHHHHHHHHHhhCCCCEEEEECCCCCEEcHHH
Confidence 4566777754 344567788888887 54457789999999887766543
No 225
>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}
Probab=23.95 E-value=1.2e+02 Score=28.95 Aligned_cols=103 Identities=15% Similarity=0.103 Sum_probs=50.9
Q ss_pred cEEEEEEec------cCcchHHHHHHHHHHHhh-CCCCEEEEecC---CCCCCChHHHHHHHHhhhCCCcEEEEEcCCCc
Q 012727 334 RIGYIKLTS------FNQNASGAVREAIDTLRS-NSVNAFVLDLR---DNSGGLFPEGIEIAKIWLDKGVIVYICDSRGV 403 (457)
Q Consensus 334 ~igYi~i~s------F~~~~~~~l~~~l~~l~~-~~~~~LIlDLR---~N~GG~~~~a~~l~~~f~~~~~~~~~~~~~~~ 403 (457)
+|++|.++. ++....+++.++++.+.+ .+++.|||-=. +..|+++....... .+ +...... ......
T Consensus 39 ~Va~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~-~~-~~~~~~~-~~~~~~ 115 (298)
T 3qre_A 39 GVAIITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAA-GY-DKTMAKA-KDANLA 115 (298)
T ss_dssp SEEEEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC---------------------------
T ss_pred CEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcc-cc-ccccccc-hhHHHH
Confidence 688888855 444567788888888865 46899998422 22355554321100 00 0000000 000000
Q ss_pred eeeEeCCCCCCCCCCCcEEEEEcCCCcchHHHHHHH
Q 012727 404 RDIYDTDGTDALAASEPLAVLVNKGTASASEILAGA 439 (457)
Q Consensus 404 ~~~~~~~~~~~~~~~gpvvVLvn~~TaSaaE~~a~~ 439 (457)
......--..-...++|+|..||+.+..++-.++.+
T Consensus 116 ~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~Lala 151 (298)
T 3qre_A 116 DLVGERPPHFVTMLRKPVIAAINGPCVGIGLTQALM 151 (298)
T ss_dssp -----CCTTGGGGSSSCEEEEECSCEETHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCceeecchHHHhh
Confidence 000000001112468999999999999998777765
No 226
>3t6o_A Sulfate transporter/antisigma-factor antagonist S; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.10A {Planctomyces limnophilus}
Probab=23.39 E-value=75 Score=25.38 Aligned_cols=47 Identities=6% Similarity=0.015 Sum_probs=33.1
Q ss_pred CcEEEEEEecc----CcchHHHHHHHHHHHh-hCCCCEEEEecCCCCCCChH
Q 012727 333 PRIGYIKLTSF----NQNASGAVREAIDTLR-SNSVNAFVLDLRDNSGGLFP 379 (457)
Q Consensus 333 ~~igYi~i~sF----~~~~~~~l~~~l~~l~-~~~~~~LIlDLR~N~GG~~~ 379 (457)
+++..+++..- ...+...+++.+.+.. +.+.+.+|||+.+=.-=+..
T Consensus 13 ~~~~vv~l~G~l~~ld~~~~~~l~~~l~~~l~~~~~~~vvlDls~v~~iDSs 64 (121)
T 3t6o_A 13 AQVTVISFPAVFQRLRETEVEQIASTFLAAMQGAQPRKVLIDLEGVEFFGSS 64 (121)
T ss_dssp TTEEEEECCGGGSEECHHHHHHHHHHHHHTTCCSSSCEEEEECTTCCEECHH
T ss_pred CCEEEEEEccccccCchhhHHHHHHHHHHHHhhcCCCeEEEECCCCCEEcHH
Confidence 47778888752 3456778888875543 45789999999987755543
No 227
>4dgh_A Sulfate permease family protein; STAS domain, anion exchange, membrane, transport protein; HET: MSE; 1.90A {Vibrio cholerae} PDB: 3mgl_A*
Probab=20.92 E-value=2.4e+02 Score=22.56 Aligned_cols=64 Identities=13% Similarity=0.153 Sum_probs=41.0
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHHHhhCCCCEEEEecCCCCCCChHHHHHH---HHhhhCCCcEEEE
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDTLRSNSVNAFVLDLRDNSGGLFPEGIEI---AKIWLDKGVIVYI 397 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~~~~~LIlDLR~N~GG~~~~a~~l---~~~f~~~~~~~~~ 397 (457)
+++..+++.. +.-.+.+.+++.+..+ ..+.+.+|||+++=..=+......| ...+-..+..+..
T Consensus 19 ~~v~v~~~~G~L~f~~a~~~~~~l~~~-~~~~~~vvlDls~v~~iDssgl~~L~~~~~~~~~~g~~l~l 86 (130)
T 4dgh_A 19 RELAVYALEGPFFFAAAETFERVMGSI-QETPQILILRLKWVPFMDITGIQTLEEMIQSFHKRGIKVLI 86 (130)
T ss_dssp TTEEEEECCSSCCHHHHHHHHHHHHHS-SSCCSEEEEECTTCCCCCHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred CCEEEEEEeeeEeehhHHHHHHHHHHh-ccCCCEEEEECCCCCcccHHHHHHHHHHHHHHHHCCCEEEE
Confidence 5788888876 3334677888888765 3567999999999887665433322 2334444554444
No 228
>1sbo_A Putative anti-sigma factor antagonist TM1442; open sandwich, JCSG, structural genomics, joint center for structural genomics, PSI; NMR {Thermotoga maritima} SCOP: c.13.2.1 PDB: 1t6r_A* 1vc1_A
Probab=20.11 E-value=2.5e+02 Score=21.20 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=31.2
Q ss_pred CcEEEEEEec-cCcchHHHHHHHHHHHhhC-CCCEEEEecCCCCCCChHHH
Q 012727 333 PRIGYIKLTS-FNQNASGAVREAIDTLRSN-SVNAFVLDLRDNSGGLFPEG 381 (457)
Q Consensus 333 ~~igYi~i~s-F~~~~~~~l~~~l~~l~~~-~~~~LIlDLR~N~GG~~~~a 381 (457)
+++..+++.. +.....+.+++.+.++... ..+.+|||+++=.-=+....
T Consensus 12 ~~~~vv~l~G~l~~~~~~~l~~~l~~~~~~~~~~~vvlDls~v~~iDssgl 62 (110)
T 1sbo_A 12 DDKAIVRVQGDIDAYNSSELKEQLRNFISTTSKKKIVLDLSSVSYMDSAGL 62 (110)
T ss_dssp SSEEEEEEESCBSTTTTTHHHHHHHTHHHHCSCSEEEEECTTCCCBCHHHH
T ss_pred CCEEEEEEeeEEccccHHHHHHHHHHHHhcCCCcEEEEECCCCcEEccHHH
Confidence 4666777754 3334556777777665433 34789999998776665443
Done!