BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012728
(457 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225444694|ref|XP_002277754.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Vitis
vinifera]
Length = 730
Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/428 (81%), Positives = 387/428 (90%), Gaps = 2/428 (0%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +QS S T+K + KEALVKLLRWHFGHA+FR +QL+AI+A+LSGRDCFCLM
Sbjct: 1 MKKSPLPVQSVSGTEKK--VCGKEALVKLLRWHFGHAEFRGRQLEAIEAILSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAKPGIVLVV PLIALMENQV+ LKEKGIA EFLSSTQT +V+ KI
Sbjct: 59 PTGGGKSMCYQIPALAKPGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTQTTKVRDKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL SGKPSLRLLYVTPEL ATPGFMS+L KIH+RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLQSGKPSLRLLYVTPELIATPGFMSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLRN+LPDVPILALTATA PKVQKDV+ESLCLQNPLVLKSSFNRPN++YEVRYKD
Sbjct: 179 YRKLSSLRNHLPDVPILALTATAVPKVQKDVIESLCLQNPLVLKSSFNRPNIYYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD YADL +LK+ G+ C IVYCLERTTCDELSA+LS GIS AAYHAGLN+K RSSV
Sbjct: 239 LLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDWISS+ QVVVATVAFGMGIDRKDVR+VCHFNIPKSMEAFYQESGRAGRDQLPS+SLL
Sbjct: 299 LDDWISSKIQVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
YYG+DDR+RMEFILS +SK QS S+++ SKKS++DFS MV+YCEGS CRRKKILE+F
Sbjct: 359 YYGIDDRKRMEFILSNAESKKLQSSSSQDGMSKKSLADFSHMVEYCEGSSCRRKKILENF 418
Query: 421 GEQVLGCV 428
GEQV +
Sbjct: 419 GEQVAASI 426
>gi|38230500|gb|AAR14271.1| predicted protein [Populus tremula x Populus alba]
Length = 772
Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/424 (79%), Positives = 375/424 (88%), Gaps = 4/424 (0%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKS L M + + K++ KE LVKLLRWHFG+ FR KQL+AI+AVLSGRDCFCLM
Sbjct: 1 MKKSSLPMVQNTGS-KDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLM 59
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAK GIVLVVSPLI ENQVI LKEKGIA EFLSSTQ V+ KI
Sbjct: 60 PTGGGKSMCYQIPALAKHGIVLVVSPLI---ENQVIALKEKGIAAEFLSSTQHQVVRNKI 116
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL ATPGFMSKL KIH+RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 117 HEDLDSGKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRPS 176
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLRN+LPDVP+LALTATAAPKVQ DV+ESLCLQ+PLVLKSSFNRPN++YEVRYKD
Sbjct: 177 YRKLSSLRNHLPDVPVLALTATAAPKVQNDVIESLCLQDPLVLKSSFNRPNIYYEVRYKD 236
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDDAYADL SVLK+ GD CAIVYCLER TCD LSA+LS GIS AAYHAGLN+K RSSV
Sbjct: 237 LLDDAYADLPSVLKSCGDVCAIVYCLERATCDGLSAHLSKNGISSAAYHAGLNNKLRSSV 296
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDWISS+ QVVVATVAFGMGIDRKDVR+VCHFNIPKSME+FYQESGRAGRDQLPSKSLL
Sbjct: 297 LDDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSKSLL 356
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
YYG+DDR++MEFIL ++K QS S+ SKKS++DF+ M++YCEG+GCRRKKILESF
Sbjct: 357 YYGVDDRKKMEFILRNAENKKLQSSSSGGELSKKSLTDFNLMIEYCEGAGCRRKKILESF 416
Query: 421 GEQV 424
GEQV
Sbjct: 417 GEQV 420
>gi|297738545|emb|CBI27790.3| unnamed protein product [Vitis vinifera]
Length = 746
Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/445 (76%), Positives = 382/445 (85%), Gaps = 19/445 (4%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +QS S T+K + KEALVKLLRWHFGHA+FR +QL+AI+A+LSGRDCFCLM
Sbjct: 1 MKKSPLPVQSVSGTEKK--VCGKEALVKLLRWHFGHAEFRGRQLEAIEAILSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAKPGIVLVV PLIALMENQV+ LKEKGIA EFLSSTQT +V+ KI
Sbjct: 59 PTGGGKSMCYQIPALAKPGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTQTTKVRDKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL SGKPSLRLLYVTPEL ATPGFMS+L KIH+RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLQSGKPSLRLLYVTPELIATPGFMSRLTKIHARGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLRN+LPDVPILALTATA PKVQKDV+ESLCLQNPLVLKSSFNRPN++YEVRYKD
Sbjct: 179 YRKLSSLRNHLPDVPILALTATAVPKVQKDVIESLCLQNPLVLKSSFNRPNIYYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD YADL +LK+ G+ C IVYCLERTTCDELSA+LS GIS AAYHAGLN+K RSSV
Sbjct: 239 LLDDVYADLSKLLKSCGNVCGIVYCLERTTCDELSAHLSKNGISSAAYHAGLNNKLRSSV 298
Query: 301 LDDWISSRKQVVVATVA-----------------FGMGIDRKDVRLVCHFNIPKSMEAFY 343
LDDWISS+ QVV+ + +GIDRKDVR+VCHFNIPKSMEAFY
Sbjct: 299 LDDWISSKIQVVINSWGFFFIFNFFLFFALFNIILSIGIDRKDVRIVCHFNIPKSMEAFY 358
Query: 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMV 403
QESGRAGRDQLPS+SLLYYG+DDR+RMEFILS +SK QS S+++ SKKS++DFS MV
Sbjct: 359 QESGRAGRDQLPSRSLLYYGIDDRKRMEFILSNAESKKLQSSSSQDGMSKKSLADFSHMV 418
Query: 404 DYCEGSGCRRKKILESFGEQVLGCV 428
+YCEGS CRRKKILE+FGEQV +
Sbjct: 419 EYCEGSSCRRKKILENFGEQVAASI 443
>gi|255579791|ref|XP_002530733.1| DNA helicase, putative [Ricinus communis]
gi|223529697|gb|EEF31639.1| DNA helicase, putative [Ricinus communis]
Length = 718
Score = 698 bits (1802), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/426 (79%), Positives = 380/426 (89%), Gaps = 7/426 (1%)
Query: 1 MKKSPLAMQ--STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFC 58
M KSPL +Q S++ Q+ + + KE LVKLLRWHFGH+ FR KQL+AIQ+VLSGRDCFC
Sbjct: 1 MNKSPLPVQIISSNDKQRKQMITGKEGLVKLLRWHFGHSDFRGKQLEAIQSVLSGRDCFC 60
Query: 59 LMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118
LMPTGGGKSMCYQIPAL++PGIVLVVSPLIALMENQV+ LKEK IA EFLSSTQT Q+KT
Sbjct: 61 LMPTGGGKSMCYQIPALSRPGIVLVVSPLIALMENQVMALKEKEIAAEFLSSTQTSQLKT 120
Query: 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178
KI+EDLDSGKPS+RLLYVTPEL ATPGFMSKL +IH+RGLLNL+AIDEAHCIS+WGHDFR
Sbjct: 121 KIHEDLDSGKPSIRLLYVTPELIATPGFMSKLTRIHARGLLNLIAIDEAHCISTWGHDFR 180
Query: 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 238
SYRKLSSLRN PDVPILALTATA PKVQKDV+ESLCLQ+PL+LKSSFNR N++YEVRY
Sbjct: 181 ASYRKLSSLRNLFPDVPILALTATAVPKVQKDVIESLCLQDPLILKSSFNRSNIYYEVRY 240
Query: 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298
KDLLDDAYADL SVLK++GD CAI+YCL+RTTCD L+A+LS GISCAAYHAGLN+K RS
Sbjct: 241 KDLLDDAYADLSSVLKSSGDICAIIYCLQRTTCDGLAAHLSKNGISCAAYHAGLNNKLRS 300
Query: 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358
SVLDDWISS+ QVVVATVAFG KDV+LVCHFNIPKSMEAFYQESGRAGRDQLP +S
Sbjct: 301 SVLDDWISSKIQVVVATVAFG-----KDVKLVCHFNIPKSMEAFYQESGRAGRDQLPCRS 355
Query: 359 LLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILE 418
LLYYG+DD++RMEFILS SK QS S+++ SKKS+SDF QMV+YCEGSGCRRKKILE
Sbjct: 356 LLYYGVDDQKRMEFILSSAGSKKLQSSSSQDGLSKKSLSDFKQMVEYCEGSGCRRKKILE 415
Query: 419 SFGEQV 424
SFGEQV
Sbjct: 416 SFGEQV 421
>gi|30690461|ref|NP_195299.2| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|75334307|sp|Q9FT72.1|RQL3_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 3; AltName:
Full=RecQ-like protein 3; Short=AtRecQ3; Short=AtRecQl3
gi|11121447|emb|CAC14867.1| DNA Helicase [Arabidopsis thaliana]
gi|332661156|gb|AEE86556.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 713
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/423 (76%), Positives = 377/423 (89%), Gaps = 9/423 (2%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALAKPGIVLVVSPLIALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FYEVRYKD
Sbjct: 179 YRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 239 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 299 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
YYG+DDR++ME++L +NS++ + SSKK SDF Q+V YCEGSGCRRKKILESF
Sbjct: 359 YYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRKKILESF 411
Query: 421 GEQ 423
GE+
Sbjct: 412 GEE 414
>gi|356532786|ref|XP_003534951.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Glycine max]
Length = 732
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/432 (76%), Positives = 372/432 (86%), Gaps = 5/432 (1%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M+KS L + + +K + L KE LVKLLRWHFG+ FRD QLDAIQAVLSG+DCFCLM
Sbjct: 1 MQKSALPLSDANANKKREELRRKETLVKLLRWHFGYPDFRDMQLDAIQAVLSGKDCFCLM 60
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAK GIVLVV PLIALMENQV+ LKEKGIA EFLSST+T K KI
Sbjct: 61 PTGGGKSMCYQIPALAKAGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTTDAKVKI 120
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS RLLYVTPEL TPGFM+KL KI++RGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 121 HEDLDSGKPSTRLLYVTPELITTPGFMTKLTKIYTRGLLNLIAIDEAHCISSWGHDFRPS 180
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLR++LPDVPILALTATA PKVQKDV+ESL +QNPL+LKSSFNRPN++YEVRYKD
Sbjct: 181 YRKLSSLRSHLPDVPILALTATAVPKVQKDVVESLQMQNPLMLKSSFNRPNIYYEVRYKD 240
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDDAYADL + LK+ GD CAIVYCLER+ CD+LS LS GISCAAYHAGLN+K R+SV
Sbjct: 241 LLDDAYADLSNTLKSLGDVCAIVYCLERSMCDDLSTNLSQNGISCAAYHAGLNNKMRTSV 300
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDWISS+ +VVVATVAFG KDVR+VCHFNIPKSMEAFYQESGRAGRDQLPS+SLL
Sbjct: 301 LDDWISSKIKVVVATVAFG-----KDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSRSLL 355
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
YYG+DDR+RMEFIL K+ SK SQS S++E SSK S+ F+ MV+YCEGSGCRRK++LESF
Sbjct: 356 YYGVDDRKRMEFILRKSVSKKSQSSSSQEESSKMSLIAFNLMVEYCEGSGCRRKRVLESF 415
Query: 421 GEQVLGCVASVT 432
GEQV + T
Sbjct: 416 GEQVTASLCGKT 427
>gi|297802358|ref|XP_002869063.1| hypothetical protein ARALYDRAFT_491073 [Arabidopsis lyrata subsp.
lyrata]
gi|297314899|gb|EFH45322.1| hypothetical protein ARALYDRAFT_491073 [Arabidopsis lyrata subsp.
lyrata]
Length = 744
Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/454 (70%), Positives = 375/454 (82%), Gaps = 40/454 (8%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M KSPL +Q+ + +K + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MNKSPLPVQNVHSS--DKKVAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLI---------------------------ALMEN 93
PTGGGKS+CYQIPALAKPGIVLVVSPLI ALMEN
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIESLFLLVSLTMCFVSTLMLSCFFFNFSALMEN 118
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV+ LKEKGIA E+LSSTQ VK KI+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+
Sbjct: 119 QVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKL 178
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
HSRGLLNL+AIDEAHCISSWGHDFRPSYR+LS+LR+ L DVP+LALTATAAPKVQKDV++
Sbjct: 179 HSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVID 238
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL LQNPLVLKSSFNRPN+FYEVRYKDLLD+AY DL ++LK+ G+ CAI+YCLERTTCD+
Sbjct: 239 SLNLQNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDD 298
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329
LS +LS+ GIS +AYHAGLN K RS+VLDDW+SS+KQ++VATVAFG +GID+KDVR+
Sbjct: 299 LSVHLSSIGISSSAYHAGLNSKLRSTVLDDWLSSKKQIIVATVAFGSMGHVGIDKKDVRM 358
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
VCHFNIPKSME+FYQESGRAGRDQLPS+S+LYYG+DDR++ME++L +++K S
Sbjct: 359 VCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENKKSP------ 412
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
SSKK SDF Q+V YCEGSGCRRKKILESFGE+
Sbjct: 413 -SSKKPTSDFEQIVTYCEGSGCRRKKILESFGEE 445
>gi|449446630|ref|XP_004141074.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
gi|449488107|ref|XP_004157941.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Cucumis
sativus]
Length = 729
Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/433 (73%), Positives = 376/433 (86%), Gaps = 5/433 (1%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKS L + S ++ +K+K + KE+L KLLRWHFGH++FR KQL+ I+AVLSG+DCFCLM
Sbjct: 1 MKKSSLPLLSNNRPEKHK--YSKESLTKLLRWHFGHSEFRGKQLETIEAVLSGKDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALA G+VLVV PLIALMENQV+ LKEKGI+ E+LSSTQ+ Q K KI
Sbjct: 59 PTGGGKSVCYQIPALASNGMVLVVCPLIALMENQVMALKEKGISAEYLSSTQSTQAKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL+S KP+LRLLYVTPEL AT GFM+KL KI+SRGLLNL+AIDEAHCIS+WGHDFRPS
Sbjct: 119 HEDLNSSKPTLRLLYVTPELIATSGFMAKLMKIYSRGLLNLIAIDEAHCISTWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLSSLR+ LP++PILALTATA PKVQKDV+ SL L+NPLVLKSSFNRPN++YEVRYKD
Sbjct: 179 YRKLSSLRSQLPNIPILALTATAVPKVQKDVIISLGLENPLVLKSSFNRPNIYYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD ADLC+ LK++GD CAI+YCLER CD+LS YL+ GISCAAYHAGL ++ R SV
Sbjct: 239 LLDDPLADLCNQLKSSGDVCAIIYCLERAMCDQLSVYLAKYGISCAAYHAGLKNELRKSV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
L+DWISSR QVVVATVAFGMGIDRKDVR+VCHFNIPKSMEAFYQESGRAGRDQLPSKSLL
Sbjct: 299 LEDWISSRIQVVVATVAFGMGIDRKDVRVVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQ---SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKIL 417
YYG++DRRRMEFIL S + + S S++E+ +KS++DF+QMV+YCEGS CRRK+IL
Sbjct: 359 YYGIEDRRRMEFILRNRSSADKKILPSSSSQEKQPEKSLTDFTQMVEYCEGSRCRRKQIL 418
Query: 418 ESFGEQVLGCVAS 430
ESFGEQV + S
Sbjct: 419 ESFGEQVPASICS 431
>gi|357450081|ref|XP_003595317.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
gi|355484365|gb|AES65568.1| ATP-dependent DNA helicase Q1 [Medicago truncatula]
Length = 776
Score = 656 bits (1693), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/472 (69%), Positives = 375/472 (79%), Gaps = 48/472 (10%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
+KKSPL + TS +K L KE+LVK+LRWHFG+ FR QL+AIQAVLSGRDCFCLM
Sbjct: 5 VKKSPLPLIETSGNKKKLELCSKESLVKVLRWHFGYPDFRGLQLEAIQAVLSGRDCFCLM 64
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKSMCYQIPALAK GIVLVV PLIALMENQV+ LKEKGIA EFLSST+T + K KI
Sbjct: 65 PTGGGKSMCYQIPALAKEGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTAKAKDKI 124
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDL SGKPS RLLYVTPEL ATPGFMSKL KIHSRGLL+L+AIDEAHCISSWGHDFRP+
Sbjct: 125 HEDLGSGKPSTRLLYVTPELIATPGFMSKLTKIHSRGLLSLIAIDEAHCISSWGHDFRPT 184
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YRKLS+LR++LPDVPILALTATA PKVQKDV+ESL +QN L+LK+SFNRPN++YEVRYKD
Sbjct: 185 YRKLSTLRSHLPDVPILALTATAVPKVQKDVVESLHMQNALILKTSFNRPNIYYEVRYKD 244
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLDD+Y+DL LK+ GD CAI+YCLER+ CD+LSA+LS GISCAAYHAGLN+K R+SV
Sbjct: 245 LLDDSYSDLSDRLKSMGDVCAIIYCLERSMCDDLSAHLSQRGISCAAYHAGLNNKMRTSV 304
Query: 301 LDDWISSRKQVVVATVAFG----------------------------------------- 319
L DWISS+ +VVVATVAFG
Sbjct: 305 LHDWISSKTKVVVATVAFGRKCGIPHQMVQIACTTGTPLRNRNATGIAWTTTPAESIGLP 364
Query: 320 -------MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
MGIDRKDVR+VCHFNIPKSMEAFYQESGRAGRDQLPS SLLYYG+DDRRRMEF
Sbjct: 365 NLWCSFRMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRRRMEF 424
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
IL + +K SQS S++E S++ S++ F+QMV+YCEGSGCRRK ILESFGEQV
Sbjct: 425 ILRNSGNKKSQSSSSQEESTRMSLTAFNQMVEYCEGSGCRRKIILESFGEQV 476
>gi|326514896|dbj|BAJ99809.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 763
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 296/425 (69%), Positives = 356/425 (83%), Gaps = 4/425 (0%)
Query: 1 MKKS-PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
MKK+ PL S K E E++ L+ +FG+++FR +QL+AI+AVLSGRDCFCL
Sbjct: 1 MKKALPLKGGSAGSRHGTKSPKELESV---LKQYFGYSEFRGRQLEAIEAVLSGRDCFCL 57
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
MPTGGGKSMCYQIPAL K G+VLV+SPLIALMENQV LK KGI EFLSSTQT K K
Sbjct: 58 MPTGGGKSMCYQIPALVKTGVVLVISPLIALMENQVSSLKSKGIPAEFLSSTQTTANKNK 117
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
I+EDLDSG+PSL+LLYVTPEL AT GF +KL K+H+RGLL LVAIDEAHCIS+WGHDFRP
Sbjct: 118 IHEDLDSGRPSLKLLYVTPELVATSGFKAKLTKLHNRGLLGLVAIDEAHCISTWGHDFRP 177
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
SYRK+SSLR PD+PILALTATA PKVQKDV+ SL LQNP++LK+SFNRPN+FYEVRYK
Sbjct: 178 SYRKISSLRKQFPDIPILALTATAVPKVQKDVISSLSLQNPVILKASFNRPNIFYEVRYK 237
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
DLLDD ++D+ ++LK++G+ C+I+YCLER CD+L+ +LS GIS AAYHAGLN K R++
Sbjct: 238 DLLDDVFSDISNLLKSSGNVCSIIYCLERAACDDLTMHLSQQGISSAAYHAGLNSKVRTT 297
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
VLDDW+SSR QVVVATVAFGMGIDR DVR+VCHFN+PKSME+FYQESGRAGRDQ PS+S+
Sbjct: 298 VLDDWLSSRTQVVVATVAFGMGIDRHDVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSV 357
Query: 360 LYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILES 419
LYYG++DRRRMEFIL + S+ Q S+ S+K+++DFSQ+VDYCE S CRRKKI+ES
Sbjct: 358 LYYGLEDRRRMEFILRNSSSRKQQPPSSSTELSEKTLADFSQIVDYCESSTCRRKKIIES 417
Query: 420 FGEQV 424
FGE+V
Sbjct: 418 FGEKV 422
>gi|357137820|ref|XP_003570497.1| PREDICTED: ATP-dependent DNA helicase Q-like 3-like [Brachypodium
distachyon]
Length = 777
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 292/399 (73%), Positives = 346/399 (86%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L +L+ +FG++ FR +QL+AI+AVLSGRDCFCLMPTGGGKSMCYQIPAL K GIVLV+S
Sbjct: 24 LENVLKQYFGYSGFRGRQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALVKAGIVLVIS 83
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALMENQV LK KG+ EFLSSTQT + K +IYEDLDSG PSL+LLYVTPEL AT G
Sbjct: 84 PLIALMENQVTSLKSKGVPAEFLSSTQTAKNKNEIYEDLDSGNPSLKLLYVTPELVATFG 143
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F +KL K++SRGLL LVAIDEAHCIS+WGHDFRPSYRK+SSLR PD+PILALTATA P
Sbjct: 144 FKAKLTKLYSRGLLGLVAIDEAHCISTWGHDFRPSYRKISSLRKQFPDIPILALTATAVP 203
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQKDV+ SLCLQNP++L++SFNRPN+FYEVRYKDLLDD Y+D+ ++LK++G+ C+I+YC
Sbjct: 204 KVQKDVISSLCLQNPVILRASFNRPNIFYEVRYKDLLDDVYSDISNLLKSSGNVCSIIYC 263
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
LER CD+L+ +LS GIS A YHAGLN K RS+VLDDW+SSR QVVVATVAFGMGIDR+
Sbjct: 264 LERAACDDLNMHLSQQGISSAVYHAGLNSKVRSAVLDDWLSSRTQVVVATVAFGMGIDRQ 323
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR+VCHFN+PKSME+FYQESGRAGRDQ PS+S+LYYG+DDRRRMEFIL SK SQ
Sbjct: 324 DVRIVCHFNLPKSMESFYQESGRAGRDQQPSRSVLYYGLDDRRRMEFILRNTNSKKSQPS 383
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
S+ S+K+++DFSQ+VDYCE S CRRKKI+ESFGE+V
Sbjct: 384 SSSSELSEKALADFSQIVDYCESSSCRRKKIIESFGEKV 422
>gi|242066738|ref|XP_002454658.1| hypothetical protein SORBIDRAFT_04g035010 [Sorghum bicolor]
gi|241934489|gb|EES07634.1| hypothetical protein SORBIDRAFT_04g035010 [Sorghum bicolor]
Length = 714
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 264/400 (66%), Positives = 320/400 (80%), Gaps = 20/400 (5%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPT 62
K L ++ S +K P + L +L +FG++ FR KQL+AI+AVLSGRDCFCLMPT
Sbjct: 2 KGVLQIKGASGREKKAP----KELESVLNQYFGYSGFRGKQLEAIEAVLSGRDCFCLMPT 57
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GGGKSMCYQ+PAL ENQV LK KGI EFLSSTQ K +I+E
Sbjct: 58 GGGKSMCYQVPAL----------------ENQVASLKNKGIPAEFLSSTQASHTKQRIHE 101
Query: 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
DLD+G PSL+LLYVTPEL AT GFM+KLKK+++RGLL LVAIDEAHCIS+WGHDFRPSYR
Sbjct: 102 DLDTGNPSLKLLYVTPELVATSGFMAKLKKLYNRGLLGLVAIDEAHCISTWGHDFRPSYR 161
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242
KLSSLR PD+P+LALTATA PKVQKDV+ SLCLQNP++L++SFNRPN+FYEVRYKDLL
Sbjct: 162 KLSSLRKQFPDIPLLALTATAVPKVQKDVISSLCLQNPVILRASFNRPNIFYEVRYKDLL 221
Query: 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
DD Y+D+ ++LK++G+ C+I+YCLER CD+LS +LS G+S AAYHAGLN K RSSVLD
Sbjct: 222 DDVYSDISNLLKSSGNACSIIYCLERAACDDLSMHLSQQGVSSAAYHAGLNSKVRSSVLD 281
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
DW+SSR QVVVATVAFGMGIDR+DVR+VCHFN+PKSME+FYQESGRAGRDQ PS+S+LYY
Sbjct: 282 DWLSSRTQVVVATVAFGMGIDRQDVRIVCHFNLPKSMESFYQESGRAGRDQRPSRSVLYY 341
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQM 402
G+DDRRRMEFIL + +Q S+ S+K+++DFSQ+
Sbjct: 342 GLDDRRRMEFILRNPKINKAQPSSSSNELSEKALADFSQV 381
>gi|224133974|ref|XP_002327725.1| predicted protein [Populus trichocarpa]
gi|222836810|gb|EEE75203.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 266/320 (83%), Positives = 288/320 (90%), Gaps = 3/320 (0%)
Query: 1 MKKSPLAM-QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
MKKSPL M Q+TS K++ KE LVKLLRWHFG+ FR KQL+AI+AVLSGRDCFCL
Sbjct: 1 MKKSPLPMVQNTSS--KDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCL 58
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
MPTGGGKSMCYQIPALAK GIVLVVSPLIALMENQV+ LKEKGIA EFLSSTQT V+ K
Sbjct: 59 MPTGGGKSMCYQIPALAKRGIVLVVSPLIALMENQVMALKEKGIAAEFLSSTQTSSVRNK 118
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
I+EDLDSGKPS+RLLYVTPEL ATPGFMSKL KIH+RGLLNL+AIDEAHCISSWGHDFRP
Sbjct: 119 IHEDLDSGKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRP 178
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
SYRKLSSLRN+LPDVP+LALTATAAPKVQ DV+ESLCLQ+PLVL SSFNRPN++YEVRYK
Sbjct: 179 SYRKLSSLRNHLPDVPVLALTATAAPKVQNDVIESLCLQDPLVLSSSFNRPNIYYEVRYK 238
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
DLLDDAYADL SVLK+ GD CAIVYCLERTTCD LSA+LS GIS AAYHAGLN+K RSS
Sbjct: 239 DLLDDAYADLSSVLKSCGDICAIVYCLERTTCDGLSAHLSKNGISSAAYHAGLNNKLRSS 298
Query: 300 VLDDWISSRKQVVVATVAFG 319
VLDDWISS+ QVVVATVAFG
Sbjct: 299 VLDDWISSKIQVVVATVAFG 318
>gi|302820099|ref|XP_002991718.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
gi|300140567|gb|EFJ07289.1| hypothetical protein SELMODRAFT_41332 [Selaginella moellendorffii]
Length = 594
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 242/401 (60%), Positives = 310/401 (77%), Gaps = 2/401 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L +LL+ +FGH+ FR QLDAI+AVL+G+DCFC+MPTG GKS+CYQIPALAKPGIVLVVS
Sbjct: 1 LEELLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALME+QV LK + I E+LSS+Q ++++ KI+E+L SGKP+L+LLYVTPE AT
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVATNH 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
M KL+K+H R LL+L+AIDEAHCISSWGHDFRPSYRKLS+LR LPD+PILALTATA+
Sbjct: 121 LMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLPDIPILALTATASK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D+++SL LQ VL SSFNR N+FYEVR+KDL+ AY DL +++ C I+YC
Sbjct: 181 KVQEDIIKSLSLQKAAVLISSFNRANIFYEVRFKDLMKSAYEDLRNIITTAPTRCMIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R CDE+ + L + GISC YHAG+N KARS L DW+ ++VAT+AFG GIDRK
Sbjct: 241 HARAMCDEIGSRLKSDGISCRVYHAGINVKARSQALQDWVLGEVHIIVATIAFGYGIDRK 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR+VCHFN+PKS+E+FYQESGRAGRD P+KS+LYY +DD+R ME+++ + +
Sbjct: 301 DVRMVCHFNMPKSLESFYQESGRAGRDGKPAKSILYYSVDDKRTMEYVIRSSSQRQQAGI 360
Query: 386 STRERSS--KKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
S + KK+I F ++V YCE + CRR+++LE FGE V
Sbjct: 361 SENGENELLKKNIEAFEKVVAYCEEASCRRRRVLEHFGENV 401
>gi|302818699|ref|XP_002991022.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
gi|300141116|gb|EFJ07830.1| hypothetical protein SELMODRAFT_41328 [Selaginella moellendorffii]
Length = 600
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 242/401 (60%), Positives = 309/401 (77%), Gaps = 2/401 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L LL+ +FGH+ FR QLDAI+AVL+G+DCFC+MPTG GKS+CYQIPALAKPGIVLVVS
Sbjct: 1 LEDLLQRYFGHSSFRGLQLDAIEAVLAGKDCFCMMPTGAGKSLCYQIPALAKPGIVLVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALME+QV LK + I E+LSS+Q ++++ KI+E+L SGKP+L+LLYVTPE AT
Sbjct: 61 PLIALMEDQVAALKSRQIFAEYLSSSQPVKMRNKIFEELQSGKPNLKLLYVTPESVATNH 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
M KL+K+H R LL+L+AIDEAHCISSWGHDFRPSYRKLS+LR LPD+PILALTATA+
Sbjct: 121 LMQKLRKLHERSLLSLIAIDEAHCISSWGHDFRPSYRKLSALRTSLPDIPILALTATASK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D+++SL LQ VL SSFNR N+FYEVR+KDL+ AY DL +++ C I+YC
Sbjct: 181 KVQEDIIKSLSLQKAAVLISSFNRANIFYEVRFKDLMTSAYEDLRNIITKAPTRCMIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R CDE+ + L + GISC YHAG+N KARS L DW+ ++VAT+AFG GIDRK
Sbjct: 241 HARAMCDEIGSRLKSDGISCRVYHAGINVKARSQALQDWVLGEVHIIVATIAFGYGIDRK 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR+VCHFN+PKS+E+FYQESGRAGRD P+KS+LYY +DD+R ME+++ + +
Sbjct: 301 DVRMVCHFNMPKSLESFYQESGRAGRDGKPAKSILYYSVDDKRTMEYVIRSSSQRQQGGI 360
Query: 386 STRERSS--KKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
S + KK+I F ++V YCE + CRR+++LE FGE V
Sbjct: 361 SENGENELLKKNIEAFEKVVAYCEEASCRRRRVLEHFGENV 401
>gi|30690466|ref|NP_849500.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
gi|332661157|gb|AEE86557.1| ATP-dependent DNA helicase Q-like 3 [Arabidopsis thaliana]
Length = 620
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 248/328 (75%), Positives = 293/328 (89%), Gaps = 7/328 (2%)
Query: 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155
+ LKEKGIA E+LSSTQ VK KI+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HS
Sbjct: 1 MALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHS 60
Query: 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215
RGLLNL+AIDEAHCISSWGHDFRPSYR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL
Sbjct: 61 RGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSL 120
Query: 216 CLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275
L+NPLVLKSSFNRPN+FYEVRYKDLLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS
Sbjct: 121 NLRNPLVLKSSFNRPNIFYEVRYKDLLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLS 180
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
+LS+ GIS AAYHAGLN K RS+VLDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNI
Sbjct: 181 VHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNI 240
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395
PKSME+FYQESGRAGRDQLPS+S+LYYG+DDR++ME++L +NS++ + SSKK
Sbjct: 241 PKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLL-----RNSENKKS--SSSKKP 293
Query: 396 ISDFSQMVDYCEGSGCRRKKILESFGEQ 423
SDF Q+V YCEGSGCRRKKILESFGE+
Sbjct: 294 TSDFEQIVTYCEGSGCRRKKILESFGEE 321
>gi|3367592|emb|CAA20044.1| putative protein [Arabidopsis thaliana]
gi|7270526|emb|CAB81483.1| putative protein [Arabidopsis thaliana]
Length = 926
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/423 (60%), Positives = 307/423 (72%), Gaps = 75/423 (17%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+S
Sbjct: 284 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVS-------- 333
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
ALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 334 ----------------------------ALMENQVMALKEKGIAAEYLSSTQATHVKNKI 365
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDE
Sbjct: 366 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDE-------------- 411
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
+ + + +VQKDV++SL L+NPLVLKSSFNRPN+FYEVRYKD
Sbjct: 412 ----------------IFFSTSILCRVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 455
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 456 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 515
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 516 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 575
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
YYG+DDR++ME++L +NS++ + SSKK SDF Q+V YCEGSGCRRKKILESF
Sbjct: 576 YYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRKKILESF 628
Query: 421 GEQ 423
GE+
Sbjct: 629 GEE 631
>gi|47497399|dbj|BAD19436.1| DNA helicase RECQE-like [Oryza sativa Japonica Group]
gi|125583898|gb|EAZ24829.1| hypothetical protein OsJ_08609 [Oryza sativa Japonica Group]
Length = 692
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/407 (59%), Positives = 294/407 (72%), Gaps = 64/407 (15%)
Query: 21 HEKEA---LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
H K+A L +L+ HFG++ FR KQL+AI+AVLS
Sbjct: 18 HGKKAPQELENVLKQHFGYSGFRGKQLEAIEAVLS------------------------- 52
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
ALMENQV LK KGI EFLSSTQT K KI+EDLDSG PSL+LLYVT
Sbjct: 53 -----------ALMENQVASLKSKGIPAEFLSSTQTSHNKQKIHEDLDSGNPSLKLLYVT 101
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PEL AT GF +KL K+++RGLL LVAIDEAHCIS+WGHDFRPSYRKLSSLRN PD+PIL
Sbjct: 102 PELVATSGFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRPSYRKLSSLRNQFPDIPIL 161
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQKDV+ SLCL+NPL+L++SFNRPN+FYEVRYKDLLDD Y+D+ ++LK++G
Sbjct: 162 ALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRYKDLLDDVYSDISNLLKSSG 221
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ C+IVYCLER CD+L+ +LS GIS AAYHAGLN K
Sbjct: 222 NVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNSK---------------------- 259
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
GIDR+DVR+VCH+N+PKSMEAFYQESGRAGRDQ PSKS+LYYG+DDR++MEFIL
Sbjct: 260 ---GIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFILRNT 316
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++K S+ S+ S+K+++DFSQ++DYCE S CRRK I+ESFGE+V
Sbjct: 317 KNKKSELSSSSTELSEKALADFSQIIDYCENSTCRRKMIIESFGEKV 363
>gi|125541362|gb|EAY87757.1| hypothetical protein OsI_09175 [Oryza sativa Indica Group]
Length = 692
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/407 (59%), Positives = 294/407 (72%), Gaps = 64/407 (15%)
Query: 21 HEKEA---LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
H K+A L +L+ HFG++ FR KQL+AI+AVLS
Sbjct: 18 HGKKAPQELENVLKQHFGYSGFRGKQLEAIEAVLS------------------------- 52
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
ALMENQV LK KGI EFLSSTQT K KI+EDLDSG PSL+LLYVT
Sbjct: 53 -----------ALMENQVASLKSKGIPAEFLSSTQTSHNKQKIHEDLDSGNPSLKLLYVT 101
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PEL AT GF +KL K+++RGLL LVAIDEAHCIS+WGHDFRPSYRKLSSLRN PD+PIL
Sbjct: 102 PELVATSGFKAKLTKLYNRGLLGLVAIDEAHCISTWGHDFRPSYRKLSSLRNQFPDIPIL 161
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQKDV+ SLCL+NPL+L++SFNRPN+FYEVRYKDLLDD Y+D+ ++LK++G
Sbjct: 162 ALTATAVPKVQKDVISSLCLRNPLILRASFNRPNIFYEVRYKDLLDDVYSDISNLLKSSG 221
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ C+IVYCLER CD+L+ +LS GIS AAYHAGLN K
Sbjct: 222 NVCSIVYCLERAVCDDLTMHLSQQGISSAAYHAGLNSK---------------------- 259
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
GIDR+DVR+VCH+N+PKSMEAFYQESGRAGRDQ PSKS+LYYG+DDR++MEFIL
Sbjct: 260 ---GIDRQDVRIVCHYNLPKSMEAFYQESGRAGRDQQPSKSVLYYGLDDRKKMEFILRNT 316
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++K S+ S+ S+K+++DFSQ++DYCE S CRRK I+ESFGE+V
Sbjct: 317 KNKKSELSSSSTELSEKALADFSQIIDYCENSTCRRKMIIESFGEKV 363
>gi|291001553|ref|XP_002683343.1| predicted protein [Naegleria gruberi]
gi|284096972|gb|EFC50599.1| predicted protein [Naegleria gruberi]
Length = 402
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/402 (46%), Positives = 261/402 (64%), Gaps = 16/402 (3%)
Query: 30 LRWHFGHAQFRDKQLDAI-QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
L+ +F +FR Q + I V + +D ++PTGGGKS+CYQ+P+L PG+ LVVSPLI
Sbjct: 5 LKKYFKLEEFRPNQFEIIFNLVKNKQDTLVILPTGGGKSLCYQLPSLILPGVTLVVSPLI 64
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFM 147
+LM NQV L I + +S+Q KI DL+SG P+ +LLYVTPEL T+ F
Sbjct: 65 SLMHNQVQALDHLSIPSNYWNSSQKKSEIQKIQSDLESGNPNYKLLYVTPELLTSNQTFQ 124
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S ++ + SR L+L+AIDE+HCISSWGHDFR S+R+L+ L++ P VPI+ALTATA KV
Sbjct: 125 SIMRLLASRDQLSLIAIDESHCISSWGHDFRKSFRQLNFLKDTFPQVPIIALTATATEKV 184
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++ESL ++NP +SFNRPN+ YE+RYKD+L + Y DL + L + C I+YC
Sbjct: 185 RSDIVESLKMRNPKCFITSFNRPNISYEIRYKDILHNPYEDLRNFLNEHAQECGIIYCRT 244
Query: 268 RTTCDELSAYLS----AGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
R DEL LS GG SC +YHAGL R +V DW+ + +++V T+A+GM
Sbjct: 245 RNQVDELVLQLSMEKDKGGKDLFSCKSYHAGLKLSERKTVQTDWLEGKTKIIVGTIAYGM 304
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+KDVR V H+ +PKS+E FYQESGRAGRD +KSLLYY ++ ++F++S+ +
Sbjct: 305 GIDKKDVRFVVHYGMPKSLEGFYQESGRAGRDGKKAKSLLYYCSREKNSIQFLISREEKL 364
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ F+++ + CE + CRRK +LE FGE
Sbjct: 365 TQDRILAVEQG-------FNKVCEMCETACCRRKFVLEFFGE 399
>gi|340377955|ref|XP_003387494.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Amphimedon
queenslandica]
Length = 906
Score = 367 bits (941), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 185/416 (44%), Positives = 259/416 (62%), Gaps = 14/416 (3%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPAL-AKPGIVL 82
L K L+ HFG+++F+ Q +A++ V G+ D F MPTG GKS+CYQ+PAL AK G+ L
Sbjct: 11 LRKSLKEHFGYSEFKTSLQREAVECVFEGKKDVFISMPTGSGKSLCYQLPALLAKKGLAL 70
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIAL+E+QV L+ KG+ L+S + ++KI L P ++LLYVTPE+ A
Sbjct: 71 VLSPLIALIEDQVSSLQSKGLPAVALNSKTSASDRSKIASQLKLKSPPIKLLYVTPEMVA 130
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F L ++H G + +AIDEAHC+S WGHDFRP Y KL LR +P VPI+ALTAT
Sbjct: 131 TSNFRETLTRLHRNGGVVFIAIDEAHCVSEWGHDFRPDYLKLGELRGVVPGVPIIALTAT 190
Query: 203 AAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC-----SVLKAN 256
A P+VQ+DV+ SL ++ P+ V KSS RPNLFY V +K+ L D DLC ++ +
Sbjct: 191 ATPRVQEDVVRSLKMREPVSVFKSSCFRPNLFYNVSFKETLKDPLKDLCDYITEALTSST 250
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C I+YC R C EL+ +++ GI YHAGL RS V + W+ ++VAT+
Sbjct: 251 TEGCGIIYCRTREGCGELAGRITSKGILAKPYHAGLKSNERSQVQEQWMKGVVPIIVATI 310
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
+FGMG+D+ +VR V H+ +PK +EA+YQESGRAGRD L + +YY DR ++ F+L K
Sbjct: 311 SFGMGVDKANVRFVVHWTLPKGIEAYYQESGRAGRDGLKAYCRIYYSRFDRDQLLFLLQK 370
Query: 377 NQS-----KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
S K F + RS + + F +V YCE + CR I + F + + C
Sbjct: 371 EISEKETKKGKSQFKSASRSKEATEKSFETLVKYCEEANCRHTVIAQYFKDPIPEC 426
>gi|432870056|ref|XP_004071785.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Oryzias latipes]
Length = 989
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 181/416 (43%), Positives = 258/416 (62%), Gaps = 10/416 (2%)
Query: 25 ALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+L + L+ HFG FR K Q D I+AVL G RD F MPTG GKS+CYQ+PA+ GI L
Sbjct: 3 SLKQALKTHFGFNNFRSKLQEDVIKAVLKGDRDVFVCMPTGAGKSLCYQLPAMLAEGITL 62
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIAL+++QV LKE I ++S + + I DL S P L+LLY+TPE+ A
Sbjct: 63 VISPLIALIQDQVNHLKELNIPACSINSKLNVGERRLILADLGSSSPKLKLLYITPEMVA 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+P F L + SR LL+ VA+DEAHC+S WGHDFRP Y KL LR +P VP LALTAT
Sbjct: 123 SPSFQPCLTDLCSRSLLSYVAVDEAHCVSQWGHDFRPDYLKLGELRARMPGVPCLALTAT 182
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-------- 254
A VQ+D+++SL L +PL + R NL+Y+V ++DLL + Y L + ++
Sbjct: 183 APKNVQEDIVKSLRLSSPLSFVTPVFRSNLYYDVIFRDLLPNPYVHLHAFIRKALEMENG 242
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+NG C IVYC R C+ ++ L+ G+ YHAGL R+ ++W+ + V+VA
Sbjct: 243 SNGQGCGIVYCRTREGCETVAYQLTKLGVLAKPYHAGLKAGDRTEAQNEWMQGKVLVIVA 302
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T++FGMG+D+ +VR V H+N+ KS+ ++YQESGRAGRD LPS YY D+ ++ F++
Sbjct: 303 TISFGMGVDKANVRFVAHWNLAKSLASYYQESGRAGRDGLPSSCRTYYSPKDKEQINFLI 362
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ ++ + + + S K +I+DF MV +CE CR I + FG + C +
Sbjct: 363 RQEVNRRQEKRGSAKESDKSAITDFEAMVLFCEQESCRHASISKFFGNKTPNCAGA 418
>gi|300868275|ref|ZP_07112904.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
gi|300333710|emb|CBN58088.1| ATP-dependent DNA helicase [Oscillatoria sp. PCC 6506]
Length = 726
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 264/406 (65%), Gaps = 16/406 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+ +L + L+ FG+ FR Q + ++A LS RD +MPTGGGKS+C+Q+PAL KPG+
Sbjct: 11 QPRSLEQALKHFFGYDSFRPGQREIVEAALSKRDMLIVMPTGGGKSLCFQLPALLKPGLT 70
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM++QV L++ GI FL+ST + M+ +++ LD GK ++LLYV PE
Sbjct: 71 VVVSPLIALMQDQVESLRDNGIGATFLNSTLSLMETRSRETAILD-GK--IKLLYVAPER 127
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F+ L ++ + ++ AIDEAHC+S WGHDFRP YR++ +R+ P +PI+ALT
Sbjct: 128 LLSERFLPFLDQVAASLGISAFAIDEAHCVSEWGHDFRPDYRQILQVRDRYPHIPIMALT 187
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA +V+ D+M+ L L+ P + +SFNRPNL+YEVR K ++A+L ++ NG +
Sbjct: 188 ATATDRVRLDIMQQLALREPYIHVASFNRPNLYYEVRAKT--KHSFAELLQIIDKNGGS- 244
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R DEL+ L GIS YHAGLND R+S +I Q++VATVAFGM
Sbjct: 245 GIIYCLSRKNVDELAYKLQQVGISALPYHAGLNDSDRTSNQTRFIRDDVQIMVATVAFGM 304
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GI++ DVR V H+N+P+++E +YQESGRAGRD P++ +L+ G DR+ +E+++ +
Sbjct: 305 GINKPDVRFVVHYNLPRNLEGYYQESGRAGRDGEPAQCILFLGYGDRKTIEYLIEQKPDP 364
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +T++ F +++DY E S CRR L FGE G
Sbjct: 365 QEQRIATQQ---------FRRVIDYAEASDCRRTIQLSYFGEAFPG 401
>gi|443668675|ref|ZP_21134223.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
gi|159029588|emb|CAO90247.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330750|gb|ELS45444.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa DIANCHI905]
Length = 701
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 261/407 (64%), Gaps = 22/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEVR K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+N Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|425461242|ref|ZP_18840722.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
gi|389825935|emb|CCI23927.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9808]
Length = 701
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 261/407 (64%), Gaps = 22/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEVR K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+N Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|307106002|gb|EFN54249.1| hypothetical protein CHLNCDRAFT_16802, partial [Chlorella
variabilis]
Length = 351
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 178/353 (50%), Positives = 240/353 (67%), Gaps = 12/353 (3%)
Query: 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94
G FR +QL+AI A L+G+DCF LMPTGGGKS+CY + +PG VLVVSPLIALM++Q
Sbjct: 1 GFDSFRGRQLEAIMAALAGQDCFVLMPTGGGKSLCYALVPAIRPGTVLVVSPLIALMQDQ 60
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH 154
V L+ +G+ + LSST+T + ++ EDL +P +LLYVTPEL AT GFM L+ +
Sbjct: 61 VQALRARGLRADLLSSTRTEADRRRLLEDLQQHRPDTQLLYVTPELLATAGFMRCLRGAY 120
Query: 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMES 214
+ G L LVA+DEAH IS+ GHDFRP+YR+L ++R LP +P++ALTATA+ +VQ+D++
Sbjct: 121 AAGALQLVAVDEAHSISAMGHDFRPAYRQLGAVRRELPRLPLMALTATASDRVQRDIVRQ 180
Query: 215 LCLQNPLVLKSSFNRPNLFYE----VRYKDLLDDAYADLCSVLKANGDT------CAIVY 264
L ++ P +L++SF+RPN+ YE + + LL A CS + C ++Y
Sbjct: 181 LGMREPRLLRTSFDRPNIRYEGGCPLASRRLL--ALHACCSRRQPGEQQGKVPVPCTVIY 238
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R D ++A L A GI+ AAYHAGL RS VL DW + R VV ATVAFGMGIDR
Sbjct: 239 CHRREDVDRVAAALRAHGIAAAAYHAGLPGATRSRVLQDWQAGRLAVVAATVAFGMGIDR 298
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
DVR V H ++P S+EA+YQE+GRAGRD PS+S++YY DR R EF+L +
Sbjct: 299 ADVRYVLHHSLPGSLEAYYQEAGRAGRDGAPSRSIVYYSRRDRERHEFVLRRQ 351
>gi|425433706|ref|ZP_18814184.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
gi|389675683|emb|CCH95185.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9432]
Length = 701
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 261/407 (64%), Gaps = 22/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+N Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|425450984|ref|ZP_18830806.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
gi|389767941|emb|CCI06812.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 7941]
Length = 701
Score = 359 bits (922), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 261/407 (64%), Gaps = 22/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGKKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ +L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEHLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+N Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|440756898|ref|ZP_20936098.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
gi|440172927|gb|ELP52411.1| ATP-dependent DNA helicase RecQ [Microcystis aeruginosa TAIHU98]
Length = 701
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 259/407 (63%), Gaps = 22/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L+ HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKHHFGYDQFRPNQRQIIEAALNDQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS----GKPSLRLLYVTPE 139
VSPLIALM++QV L + GI FL+ST + K D +S GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNST----LNAKQVRDRESLILQGK--IKLLYVAPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILAL
Sbjct: 119 RLLSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +V++D+++ L L++ + +SFNRPNL+YEVR K +Y L +K +
Sbjct: 179 TATATQQVREDIIQQLGLRDASIHIASFNRPNLYYEVRAK--TSKSYQQLYQYIKGQKGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R T D+++ L GI+ YHAG+ND+ RS +I Q++VAT+AFG
Sbjct: 237 -GIVYCISRKTVDQVAEQLQKDGINALPYHAGMNDQERSENQTRFIRDDVQIMVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++
Sbjct: 296 MGINKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTE 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+N Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 356 QNEQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|348533151|ref|XP_003454069.1| PREDICTED: ATP-dependent DNA helicase Q5 [Oreochromis niloticus]
Length = 1040
Score = 357 bits (916), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 180/415 (43%), Positives = 254/415 (61%), Gaps = 10/415 (2%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
L + L+ HFG FR K Q D ++AV G RD F MPTG GKS+CYQ+PA+ GI LV
Sbjct: 5 LKQALKTHFGFDSFRSKLQEDVVKAVHRGDRDVFVCMPTGAGKSLCYQLPAVLAEGITLV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIAL+++QV LKE I ++S + I DL S P L+LLY+TPE+ A+
Sbjct: 65 ISPLIALIQDQVDHLKELNIPACSINSKLLANERRLILADLGSSNPKLKLLYITPEMVAS 124
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F L + SRGLL+ +A+DEAHC+S WGHDFRP Y KL LR L VP LALTATA
Sbjct: 125 PSFHPCLMDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGELRARLQGVPCLALTATA 184
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK--------A 255
VQ+D+++SL L +PL + R NL Y+V +++LL + Y L + +K +
Sbjct: 185 PKNVQEDIIQSLKLSSPLSFLTPVFRSNLHYDVIFRELLPNPYVHLHAFIKKTLSLGAGS 244
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
NG C IVYC R C+ ++ L+ G+ YHAGL R+ V ++W+ + V+VAT
Sbjct: 245 NGQGCGIVYCRTREGCETVAHQLTKLGVVAKPYHAGLKPTDRTGVQNEWMQGKVLVIVAT 304
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+N+ KS+ ++YQESGRAGRD LPS YY D+ ++ F++
Sbjct: 305 ISFGMGVDKANVRFVAHWNLAKSLASYYQESGRAGRDGLPSACRTYYSPRDKEQINFLIR 364
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ ++ + + S K +++DF MV +CE GCR I + FG C +
Sbjct: 365 QEVARKQEKRGFAKDSDKTAMTDFEAMVSFCEQEGCRHATISKFFGNTAPNCAGA 419
>gi|390440423|ref|ZP_10228752.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
gi|389836165|emb|CCI32878.1| ATP-dependent DNA helicase recQ [Microcystis sp. T1-4]
Length = 703
Score = 357 bits (916), Expect = 8e-96, Method: Compositional matrix adjust.
Identities = 178/405 (43%), Positives = 259/405 (63%), Gaps = 18/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E+L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 ESLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHTASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQKGS-G 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI YHAG++D+ RS +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|260806927|ref|XP_002598335.1| hypothetical protein BRAFLDRAFT_119181 [Branchiostoma floridae]
gi|229283607|gb|EEN54347.1| hypothetical protein BRAFLDRAFT_119181 [Branchiostoma floridae]
Length = 425
Score = 356 bits (914), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 184/397 (46%), Positives = 255/397 (64%), Gaps = 23/397 (5%)
Query: 34 FGHAQFR-DKQLDAIQAVLSGRDC------FCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
F H +FR + Q +A +AV+ R C + MPTG GKS+CYQ+PA+ PGI +VVSP
Sbjct: 15 FKHDEFRSEAQENATRAVVRARTCSGRKDVYISMPTGAGKSLCYQLPAVMAPGITMVVSP 74
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++Q+ L++ I E L+S + + + ++ DL S KP +LLY+TPEL ATPGF
Sbjct: 75 LIALMQDQLEHLRKLNICAESLNSKLSAKDRKRVLADLRSSKPKTKLLYITPELAATPGF 134
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L+ + SR LL +A+DEAHC+S WGHDFRP Y KL SLR L DVP +ALTATA
Sbjct: 135 QQLLETLKSRKLLAHLAVDEAHCVSQWGHDFRPDYLKLGSLREKLEDVPCIALTATATSA 194
Query: 207 VQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGDT----- 259
VQKD++ SL LQ P+ K+S RPNLFY+V+YK++LDD Y DL +KA G+
Sbjct: 195 VQKDIINSLHLQEPVQKFKTSVFRPNLFYDVKYKEVLDDPYEDLKDFAVKALGEEGVEPV 254
Query: 260 ------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
C IVYC R C E++A L+ G+ AYHAGL D R V DW+ + V+V
Sbjct: 255 KGPHKGCGIVYCRTRDGCTEVAARLTKKGLLSKAYHAGLKDSTREEVQMDWMEGKVPVIV 314
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT++FGMG+D+ VR V H+NIPKSM +YQESGRAGRD + LYY +R ++ F+
Sbjct: 315 ATISFGMGVDKATVRFVAHWNIPKSMAGYYQESGRAGRDGKQAFCRLYYSRHERDQVCFL 374
Query: 374 LSKNQSKNSQSFSTR---ERSSKKSISDFSQMVDYCE 407
+ ++ S+ +++ + ++K +++ F +V YCE
Sbjct: 375 IKQDISRPNKANGPKGVLGPNAKSAMASFETLVKYCE 411
>gi|166362830|ref|YP_001655103.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
gi|166085203|dbj|BAF99910.1| ATP-dependent DNA helicase [Microcystis aeruginosa NIES-843]
Length = 703
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 260/405 (64%), Gaps = 18/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +K+ Q++DY EG+ CRR ++L FGE G
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGTECRRSRVLGYFGESFAG 393
>gi|425466065|ref|ZP_18845368.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
gi|389831578|emb|CCI25550.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9809]
Length = 703
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 260/405 (64%), Gaps = 18/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +K+ Q++DY EG+ CRR ++L FGE G
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGTECRRSRVLGYFGESFAG 393
>gi|425441134|ref|ZP_18821420.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
gi|389718248|emb|CCH97777.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9717]
Length = 703
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 260/405 (64%), Gaps = 18/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGNECRRSSVLGYFGESFAG 393
>gi|334322907|ref|XP_001377617.2| PREDICTED: ATP-dependent DNA helicase Q5 [Monodelphis domestica]
Length = 996
Score = 355 bits (911), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 262/418 (62%), Gaps = 13/418 (3%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+S
Sbjct: 19 RTLKKIFGFDSFKTNLQENATMAVVKGEKDVFVCMPTGAGKSLCYQLPALLAAGITIVIS 78
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L + L+S + Q + KI DL+ KP ++LY+TPE+ A+
Sbjct: 79 PLIALIQDQVDHLLALKVHVCSLNSKLSAQERKKILMDLEKEKPQTKILYITPEMAASAS 138
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LRN +PD P +ALTATA
Sbjct: 139 FQPILNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRNRIPDAPCVALTATATQ 198
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGD----- 258
KVQ+DV+ +L L+ P+ + K+S R NLFY+V++KDLL D Y +L LKA G
Sbjct: 199 KVQEDVVTALKLRQPVAIFKTSCFRANLFYDVQFKDLLGDPYGNLKDFCLKALGQKNDKG 258
Query: 259 ---TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+C I+YC R C++L+ LS+ G+ AYHAGL + R V ++W+ + V+VAT
Sbjct: 259 AFSSCGIIYCRTREACEQLATELSSRGVKAKAYHAGLKAEDRMLVQNEWMEEKVPVIVAT 318
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD LPS LYY DR ++ F++
Sbjct: 319 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGLPSWCRLYYSRKDRDQVSFLIK 378
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH 433
K SK + ++ S K S++ F +VD+CE GCR I + FG+ C H
Sbjct: 379 KEISKLQEKRGNKD-SDKASMAAFEAVVDFCEKLGCRHAAIAKYFGDAPPPCFKGCDH 435
>gi|427707114|ref|YP_007049491.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
gi|427359619|gb|AFY42341.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7107]
Length = 718
Score = 355 bits (910), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 262/406 (64%), Gaps = 16/406 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDQFRPGQRKIIEDALQNRDLLVVMPTGGGKSLCFQLPALVKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS QV+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNPYQVRSR-EEAILNGK--VRLLYVAPERLMSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L +H + ++ AIDEAHC+S WGHDFRP YR+L SLR+ P VP++ALTATA
Sbjct: 124 RFLPFLDLVHHQVGISTFAIDEAHCVSEWGHDFRPEYRQLRSLRSRYPHVPMIALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ + L+ P + +SFNR NL+YEVR K AYA+L +++ D AI+Y
Sbjct: 184 ERVRSDIIQQIGLKQPSIHIASFNRQNLYYEVRPKTKY--AYAELLELIR-EIDGSAIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L +S AYHAGL+D+ RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKVSVLAYHAGLSDEERSKNQTRFIRDDARVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ +++ Q
Sbjct: 301 PDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFGDIKTIEWSINQKTDAQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ ++ QM+DY EG+ CRR L FGE+ LG A+
Sbjct: 361 IAKQQ---------LRQMIDYAEGTDCRRTIQLSYFGERFLGNCAN 397
>gi|422302785|ref|ZP_16390144.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
gi|389787941|emb|CCI16794.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9806]
Length = 703
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 178/409 (43%), Positives = 261/409 (63%), Gaps = 18/409 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQ-KGAG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI+ YHAG+ D+ RS+ +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDKVAEQLQKDGINALPYHAGMEDRERSNNQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
Q +K+ Q++DY EG+ CRR +L FGE G A+
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFSGNCAN 397
>gi|425444700|ref|ZP_18824746.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|425454418|ref|ZP_18834158.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
gi|389735511|emb|CCI01005.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9443]
gi|389804921|emb|CCI15689.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9807]
Length = 703
Score = 355 bits (910), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 260/405 (64%), Gaps = 18/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K+L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKVLKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQKGS-G 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI YHAG++D+ RS +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDKVAEQLQKDGIDALPYHAGMDDRERSENQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFSG 393
>gi|425470694|ref|ZP_18849554.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
gi|389883511|emb|CCI36062.1| ATP-dependent DNA helicase recQ [Microcystis aeruginosa PCC 9701]
Length = 701
Score = 354 bits (909), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 177/405 (43%), Positives = 259/405 (63%), Gaps = 18/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L K L++HFG+ QFR Q I+A L+ +D +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 5 DSLEKALKYHFGYDQFRPNQRQIIEAALNNQDLLVIMPTGGGKSLCFQLPALIKKGVTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLD-SGKPSLRLLYVTPELT 141
VSPLIALM++QV L + GI FL+ST QV+ + E L GK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVTALADNGIGATFLNSTLNAKQVRER--ESLILQGK--IKLLYVAPERL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P F+ L I + L +A+DEAHC+S WGHDFRP YR++ +R P VPILALTA
Sbjct: 121 LSPSFLDFLAVIDNYLGLACLAVDEAHCVSDWGHDFRPEYRQIKQVRQRFPSVPILALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D+++ L L++ + +SFNRPNL+YEV+ K +Y L +K +
Sbjct: 181 TATQQVREDIIQQLGLRDTSIHIASFNRPNLYYEVQPK--TSKSYQQLYQYIKGQKGS-G 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC+ R T D+++ L GI+ YHAG+ D+ RS +I Q++VAT+AFGMG
Sbjct: 238 IVYCISRKTVDQVAEQLQKDGINALPYHAGMEDRERSQNQTRFIRDDVQIMVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ DVR V H+++P+++E +YQESGRAGRD P+K L++ D R++E+ +++ +N
Sbjct: 298 INKPDVRFVVHYDLPRNLEGYYQESGRAGRDGEPAKCTLFFSFADARKIEYFINQKTEQN 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q +K+ Q++DY EG+ CRR +L FGE G
Sbjct: 358 EQ---------QKARQQLRQVLDYAEGTECRRSSVLGYFGESFAG 393
>gi|326431575|gb|EGD77145.1| RecQ5 [Salpingoeca sp. ATCC 50818]
Length = 1451
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 253/403 (62%), Gaps = 17/403 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K + G +FR QL+A A L+GRDCF LMPTGGGKS+CYQ+PAL K G+ V+S
Sbjct: 708 MLKAFKRQLGLRKFRPNQLEACNAALTGRDCFILMPTGGGKSLCYQLPALTKKGVTFVIS 767
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+L+++QV L++ I L STQ + +++I+ L +L+YVTPE + A+
Sbjct: 768 PLISLIQDQVSALRQNNIRALCLLSTQDQKTQSQIHRTLCMKDVLCKLIYVTPERIAASH 827
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ +++RGLL+ IDEAHC+S WGHDFRP Y++LS LR + P VP++ALTATA
Sbjct: 828 RLKQTMQNLYTRGLLSRFVIDEAHCVSQWGHDFRPDYKRLSCLREWFPTVPMMALTATAT 887
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR----YKDLLDDAYADLCSVLKANGDTC 260
+V++D++ +L + N LV + SFNRPNLFYEVR YK +++ ++ + + + C
Sbjct: 888 KRVKRDILMNLKMTNALVFEQSFNRPNLFYEVRKKSSYKKCVEEIGKEIRTRFR---NKC 944
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R C+ +S L+ G YHAG++ R + D W S + ++ AT+AFGM
Sbjct: 945 GIVYCLSRKECETVSQALNQSGHKSLFYHAGMDPADREAYQDQWQSGKVNIMCATIAFGM 1004
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF++PKSME +YQE+GRAGRD P+ +LYY D+ + ++ +
Sbjct: 1005 GIDKPDVRFVFHFSLPKSMEGYYQEAGRAGRDGKPAVCVLYYNYGDKAKHMRLIDIGEGS 1064
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
Q R S+ +Q+V YCE CRR + L FGE
Sbjct: 1065 YEQKEQHR--------SNLNQVVQYCENFQDCRRVQQLAYFGE 1099
>gi|443476000|ref|ZP_21065927.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
gi|443019101|gb|ELS33248.1| ATP-dependent DNA helicase RecQ [Pseudanabaena biceps PCC 7429]
Length = 769
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/427 (41%), Positives = 261/427 (61%), Gaps = 5/427 (1%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
+P+ + + Q+ + ++L + L+ +FG+ FR Q + I A L+GRD +MPTG
Sbjct: 12 TPIHLSPPKEEQEKTVMSNSDSLQQALKQYFGYESFRAGQREIIDAHLAGRDTLAIMPTG 71
Query: 64 GGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123
GGKS+C+Q+PAL K G+ +VVSPLIALM++QV LKE GI FL+ST + + + +
Sbjct: 72 GGKSICFQLPALLKTGVTIVVSPLIALMQDQVTALKENGIGATFLNSTLSGRETNQRSQA 131
Query: 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183
+ +G +++L+YV PE F+ L + ++ + AIDEAHC+S WGHDFRP YR+
Sbjct: 132 ILNG--AIKLIYVAPERLFAEQFIEFLNIVKNKIGIAGFAIDEAHCVSEWGHDFRPEYRQ 189
Query: 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243
LS LR + PDVP++ LTATA +V++D+++ L LQ P V +SFNR NL+YEV K +
Sbjct: 190 LSRLRQFYPDVPVIGLTATATERVREDIIQQLDLQQPYVHVASFNRDNLYYEVVPKQGTE 249
Query: 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303
+Y +L +K IVYCL R +E++ L GI+ YHAGL+ K R
Sbjct: 250 QSYVNLLQQIK-RMQGSGIVYCLSRKRVNEIAERLREDGIAAIPYHAGLSAKEREENQTR 308
Query: 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
WI QV+VAT+AFGMGI++ DVR V H+++PK++E +YQESGRAGRD S L+ G
Sbjct: 309 WIRDDVQVMVATIAFGMGINKPDVRFVIHYDLPKNIEGYYQESGRAGRDGEDSHCTLFLG 368
Query: 364 MDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
D ++++++ Q + + E + + Q+VDY EG CRR +L FGE
Sbjct: 369 YQDLETIKYLIA--QKVDPHTNEPLEAEQRIAQQQLRQVVDYAEGLACRRTILLRYFGEH 426
Query: 424 VLGCVAS 430
G A+
Sbjct: 427 FSGDCAN 433
>gi|406997576|gb|EKE15607.1| hypothetical protein ACD_11C00117G0003 [uncultured bacterium]
Length = 719
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 252/395 (63%), Gaps = 18/395 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG +FR Q + I+ VL+ RD F LMPTGGGKS+CYQ+PAL PGI LV+SPLI
Sbjct: 4 ILKKYFGFDEFRPLQREIIENVLNKRDTFVLMPTGGGKSLCYQLPALKFPGITLVISPLI 63
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV LK G+A EFL+S+ + +I +++ GK +++LY+ PE A+ GF +
Sbjct: 64 ALMKDQVDFLKASGVAAEFLNSSLSGDEIQRIQKEIKEGK--VKILYIAPERMASNGFEN 121
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L+ + +L+A+DEAHCIS WGHDFRP YR L L++ P VPI+ALTATA KV+
Sbjct: 122 FLQNLKP----SLIAVDEAHCISEWGHDFRPDYRNLRRLKDIFPGVPIMALTATATEKVR 177
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L +NP + SSFNR NLF+ V K +++ L +L+ I+YC R
Sbjct: 178 QDILNQLNFENPNIFISSFNRDNLFFRVIEKK---NSFEKLLKLLENRRKESVIIYCFSR 234
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ L+ L + G S AYHAGL+ R +D+I + ++VAT+AFGMGID+ DVR
Sbjct: 235 KDTENLALNLRSEGFSALAYHAGLDSAKRKKTQEDFIQDKINIIVATIAFGMGIDKPDVR 294
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
+V H+ PKS+E +YQE GRAGRD LP++ +++Y D R+ + ++ +N + + R
Sbjct: 295 MVVHYTFPKSLEGYYQEVGRAGRDGLPAECVMFYTFADARKHRYFINVMDDENLKRQTER 354
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ +++DY + + CRR+ IL FGE+
Sbjct: 355 K---------LQEVMDYADLNSCRRRHILSYFGEK 380
>gi|336476813|ref|YP_004615954.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
gi|335930194|gb|AEH60735.1| ATP-dependent DNA helicase RecQ [Methanosalsum zhilinae DSM 4017]
Length = 611
Score = 350 bits (899), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 255/394 (64%), Gaps = 18/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG+ FR Q + I +L G+D F LMPTGGGKS+CYQ+PAL G+ +V+SPLI
Sbjct: 4 ILQKYFGYNDFRPLQKEIISDILEGKDTFALMPTGGGKSLCYQLPALMMDGVTVVISPLI 63
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK GIA E+L+ST +++E L + +++LYV PE S
Sbjct: 64 SLMKDQVDNLKSNGIAAEYLNSTLGYSQIKQVHEKLIDNR--IKILYVAPERLIMSDTFS 121
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LKK G +++ A+DEAHCIS WGHDFRP YR+L+ L+ +VPI+ALTATA+PKV+
Sbjct: 122 YLKK----GKVSMFAVDEAHCISEWGHDFRPEYRRLNILKKRFRNVPIVALTATASPKVE 177
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
KD+++ L L++ ++SFNR NLFY V+ K D Y L + LK + I+YC R
Sbjct: 178 KDIVKQLSLEDCRTYRASFNRKNLFYHVKTKK---DTYRQLKAYLKKHRGESGIIYCQSR 234
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ + LS L+ G AYHAGL+D R + +I ++VATVAFGMGID+ DVR
Sbjct: 235 SMVETLSKRLNKDGFKTLAYHAGLSDFKREYNQNSFIQDNTDIIVATVAFGMGIDKPDVR 294
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PK++E++YQE+GR GRD LP + +L++ D+ ++E+ + + ++K
Sbjct: 295 FVIHYDLPKNLESYYQETGRGGRDGLPCECVLFFSYADKYKIEYFIEQKKTK-------E 347
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + ++ QM++YCE + CRRK +LE FGE
Sbjct: 348 ERDA--ALMQLRQMINYCESNQCRRKVLLEYFGE 379
>gi|410670594|ref|YP_006922965.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
gi|409169722|gb|AFV23597.1| ATP-dependent DNA helicase RecQ [Methanolobus psychrophilus R15]
Length = 705
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 248/399 (62%), Gaps = 18/399 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+++FR Q D IQ VL G+D F LMPTGGGKS+CYQ+PAL G+ +V+S
Sbjct: 1 MYQTLQKYFGYSEFRPLQKDIIQDVLDGKDTFVLMPTGGGKSLCYQLPALLMDGLTVVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV L+ G+ FL+STQ KI +D+ + +++LY+ PE A G
Sbjct: 61 PLISLMKDQVDSLRANGVNAAFLNSTQNYTESRKICDDIATN--DIKILYMAPERLAMSG 118
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S + K ++L AIDE+HCIS WGHDFRP YRKLS L+ P VPI+ALTATA P
Sbjct: 119 TLSMITKAK----VSLFAIDESHCISEWGHDFRPEYRKLSMLKKKFPKVPIIALTATATP 174
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KV++D + L L NP +SFNR NL YE+R K + Y + L+ N I+YC
Sbjct: 175 KVREDTLNQLGLTNPKTYIASFNRSNLLYEIRPKK---ETYDQILQYLRRNKGKGGIIYC 231
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D ++A L G + YHAGL+D R + +I + ++VAT+AFGMGID+
Sbjct: 232 QSRKNVDTVTAKLRKAGFNALPYHAGLSDTQRGRNQEAFIKDKADIIVATIAFGMGIDKP 291
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+++PK++E +YQE+GR GRD L + +L++ DR R+E+ + + K +
Sbjct: 292 NVRFVIHYDLPKNLEGYYQETGRGGRDGLECECILFFSHGDRYRIEYFVKQKGRKEERDI 351
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ ++ MV+YC + CRRK +L FGE++
Sbjct: 352 ALKQ---------LQDMVNYCVSTTCRRKALLSYFGEEL 381
>gi|167535712|ref|XP_001749529.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771921|gb|EDQ85580.1| predicted protein [Monosiga brevicollis MX1]
Length = 2199
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 233/352 (66%), Gaps = 2/352 (0%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+K + FG +FR QL+A+ A L G+DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 597 LLKAFKQRFGLHRFRPHQLEAVNAALLGQDCFVLMPTGGGKSLCYQLPAVTSRGVTVVIS 656
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+L+++QV GL+ GI FLSSTQ+ + +++ L + LLY+TPE +
Sbjct: 657 PLISLIQDQVAGLQALGIRVLFLSSTQSRAEQNEVHRQLCADAVQDDLLYITPERLKSSM 716
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ +H+RGLL IDEAHC+S WGHDFRP Y++L +R + P VP++ALTATA P
Sbjct: 717 MRQTFESLHARGLLARFVIDEAHCVSQWGHDFRPDYKELQIVRQWFPRVPLMALTATATP 776
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V++DV+ L +Q + +SSFNR NLFYEVR K +AD+ +++ N + IVYC
Sbjct: 777 RVKEDVLNILGMQRAVTFQSSFNRTNLFYEVRPKK--KSLFADIAAIVAKNRGSSGIVYC 834
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ R + + L GI AYHAGL+ RS V D W SR ++ AT+AFGMGID+
Sbjct: 835 MSRRDAETTALDLQRRGIKALAYHAGLDPGLRSEVQDVWARSRADIICATIAFGMGIDKP 894
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
DVR V H +PKSME +YQE+GRAGRD P++ +L+Y D+ R EF+++K+
Sbjct: 895 DVRYVIHATLPKSMEGYYQEAGRAGRDGQPAQCILFYTFADKARHEFMINKS 946
>gi|410902085|ref|XP_003964525.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Takifugu rubripes]
Length = 954
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 175/415 (42%), Positives = 254/415 (61%), Gaps = 10/415 (2%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
L ++L HFG FR K Q D ++AV+ G RD F MPTG GKS+CYQ+PA+ GI +V
Sbjct: 6 LKQVLHTHFGFENFRSKIQEDIVKAVVKGDRDVFVCMPTGAGKSLCYQLPAVLAQGITMV 65
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIAL+++QV LK I ++S + I DL S P L+LLY+TPE+ A+
Sbjct: 66 VSPLIALIQDQVDRLKSLNIPACSINSKLPAGERRLILADLGSSSPKLKLLYITPEMVAS 125
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F L + SRGLL+ +A+DEAHC+S WGHDFRP Y KL SLR +P VP LALTATA
Sbjct: 126 PSFQPCLTDLCSRGLLSYLAVDEAHCVSQWGHDFRPDYLKLGSLRARMPGVPCLALTATA 185
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK--------A 255
VQ+D+++SL + +PL + R NL Y+V +++++ + Y L + +K +
Sbjct: 186 PKNVQEDIVKSLNMCSPLSFLTPVFRSNLHYDVIFREIVPNPYVHLYAFIKKALEQEKNS 245
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N C IVYC R C+ ++ L+ G+ AYHAGL R+ V ++W+ + V+VAT
Sbjct: 246 NPQGCGIVYCRTREACETVAYQLTKLGVLAKAYHAGLKAGDRTEVQNEWMQGKVLVIVAT 305
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ VR V H+N+ KS+ ++YQESGRAGRD LPS +YY D+ ++ F++
Sbjct: 306 ISFGMGVDKATVRFVAHWNLAKSLASYYQESGRAGRDGLPSSCRIYYSPRDKEQINFLIH 365
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ + + + + K +I+DF MV +C CR I FG++ C +
Sbjct: 366 QEVKRKQEKRGFEKDTDKAAITDFEAMVSFCVQEACRHGTISRFFGDKAPNCAGA 420
>gi|75908908|ref|YP_323204.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
gi|75702633|gb|ABA22309.1| ATP-dependent DNA helicase RecQ [Anabaena variabilis ATCC 29413]
Length = 718
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 179/402 (44%), Positives = 257/402 (63%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS QV+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNAYQVRSR-EEAILNGK--VRLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L ++ + +++ AIDEAHC+S WGHDFRP YR+L SLR P+VP+LALTATA
Sbjct: 124 RFLPFLDLVNEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + AI+Y
Sbjct: 184 DRVRSDIIQQLGLKQPSIHLASFNRQNLYYEVRPKS--KQAYAELLELIRDN-EGSAIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L IS +YHAGL D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ + + Q
Sbjct: 301 PDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFGDIKTIEWSIEQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ QM+DY EG+ CRR L FGE+ G
Sbjct: 361 IAKQQ---------LRQMIDYAEGTDCRRTIQLGYFGERFAG 393
>gi|290490730|dbj|BAI79325.1| RecQ5 helicase [Gallus gallus]
Length = 1052
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 184/406 (45%), Positives = 249/406 (61%), Gaps = 12/406 (2%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G RD F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 29 FGFESFKTSLQESATMAVVRGERDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALI 88
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A F L
Sbjct: 89 QDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLN 148
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA +VQ D+
Sbjct: 149 SLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDI 208
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT-----CA 261
+ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T C
Sbjct: 209 VTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCG 268
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT++FGMG
Sbjct: 269 IVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMG 328
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K SK
Sbjct: 329 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKI 388
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ T + S K ++ F +V +CE GCR I + FG+ C
Sbjct: 389 QEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPC 434
>gi|428184941|gb|EKX53795.1| hypothetical protein GUITHDRAFT_52059, partial [Guillardia theta
CCMP2712]
Length = 340
Score = 348 bits (893), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 170/340 (50%), Positives = 224/340 (65%), Gaps = 3/340 (0%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG + FR Q +AI VL G+D + TGGGKS+CYQ+PAL PG+ +V+SPLIA
Sbjct: 1 LKQAFGLSDFRPLQKEAIHNVLGGKDVIVCLATGGGKSLCYQLPALVLPGVTVVISPLIA 60
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS-LRLLYVTPELTATPGFMS 148
LM++QV L+EKGI L+ST + I L + K S ++LLYVTPE +
Sbjct: 61 LMQDQVFSLREKGIDAVLLNSTLSPTETRNILHRLWAIKHSPIKLLYVTPEALSGSTLFP 120
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +++ + L+L AIDEAHCISSWGHDFRP++RKLS L+ + VP++ALTATA +V+
Sbjct: 121 YLNRLNEQNKLSLFAIDEAHCISSWGHDFRPAFRKLSILKRFYSKVPVIALTATATKRVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL--DDAYADLCSVLKANGDTCAIVYCL 266
D+ +L L NP L ++FNRPN+ YEVR+K+ + D D+ L C I+YC
Sbjct: 181 DDIASTLMLNNPEFLIATFNRPNITYEVRFKEQVPDSDVQGDIARFLSKMKGQCGIIYCF 240
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+RT C E++ YL G S AYHAGL + RS +L +W + +V ATVAFGMGID+ D
Sbjct: 241 KRTECSEIAMYLKGKGFSIEAYHAGLKNDERSEILQNWTEGKIHIVAATVAFGMGIDKAD 300
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VR V H +PKSME+FYQESGRAGRD PS S+LYY DD
Sbjct: 301 VRFVIHQTMPKSMESFYQESGRAGRDGKPSVSVLYYSEDD 340
>gi|326930778|ref|XP_003211518.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Meleagris gallopavo]
Length = 1055
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 252/406 (62%), Gaps = 12/406 (2%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 29 FGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALI 88
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L I L+S + Q K I DL + KP ++LLY+TPE+ A F L
Sbjct: 89 QDQVDHLLALKIKACSLNSKVSAQEKKTILADLANEKPQIKLLYITPEMAAASSFQPTLN 148
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + IDEAHC+S WGHDFRP Y +L +LR+ +P+ P +ALTATA +VQ+D+
Sbjct: 149 SLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRSRIPNTPCVALTATATKQVQEDI 208
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT-----CA 261
+ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T C
Sbjct: 209 VTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCG 268
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT++FGMG
Sbjct: 269 IVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMG 328
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K SK
Sbjct: 329 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKI 388
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ T + S K +++ F +V +CE GCR I + FG+ C
Sbjct: 389 QEKKGTLKESDKAAMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPC 434
>gi|345494123|ref|XP_001606008.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1223
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 181/400 (45%), Positives = 241/400 (60%), Gaps = 11/400 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL PGI +VVS
Sbjct: 472 MMSFFRQKFGLFNFRPNQLQAINAALLGFDCFILMPTGGGKSLCYQLPALLTPGITIVVS 531
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q L I +S QT IY ++ P L+LLYVTPE L+A+
Sbjct: 532 PLKSLILDQTQKLISLDIPAAHMSGDQTDSQTDAIYREMSKKDPVLKLLYVTPEKLSASQ 591
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L ++ RGLL IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 592 KLCNALTALYERGLLGRFVIDEAHCVSQWGHDFRPDYKKLQVLRVKYPNVPTMALTATAT 651
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
P+V+ D++ L +Q+P SSFNRPNL Y V K +A ++ ++KA D C IV
Sbjct: 652 PRVRTDILHQLGMQSPKWFMSSFNRPNLRYSVISKKG-KNASDEVIGLIKAKFKDDCGIV 710
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CD + + GI YHAGL+DK RS + WIS + +VV AT+AFGMGID
Sbjct: 711 YCLSRNDCDTYAEQMKINGIKAMGYHAGLSDKQRSDIQGRWISEQIKVVCATIAFGMGID 770
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H ++PKS+E +YQESGRAGRD ++ +L+Y D R ++ + + N
Sbjct: 771 KPNVRFVIHASLPKSIEGYYQESGRAGRDSENAECILFYNYADMYRHRKMIEMDVASN-- 828
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + K + + +MV +CE + CRR L FGE
Sbjct: 829 -----KTAQKTHMDNLFKMVTFCENTTDCRRALQLNYFGE 863
>gi|224075156|ref|XP_002190226.1| PREDICTED: ATP-dependent DNA helicase Q5 [Taeniopygia guttata]
Length = 1087
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 187/412 (45%), Positives = 253/412 (61%), Gaps = 12/412 (2%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 61 KTLQKVFGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 120
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 121 PLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQVKLLYITPEMAAASS 180
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L SLR+ +P P +ALTATA
Sbjct: 181 FQPTLNSLVSRNLLSYLVIDEAHCVSQWGHDFRPDYLRLGSLRSRIPHTPCVALTATATK 240
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT- 259
+VQ+DV+ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ G T
Sbjct: 241 QVQEDVVAALKLKQPLSTFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKGATG 300
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 301 VYSGCGIVYCRMRDVCDQLAIELSYRGLKAKAYHAGLKAAERTSVQNEWMEEKIPVIVAT 360
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 361 ISFGMGVDKGNVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 420
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
K S + T + S K ++ F +V +CE GCR I + FG+ C
Sbjct: 421 KELSNIQEKKGTLKESDKAVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPC 472
>gi|241999220|ref|XP_002434253.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
gi|215496012|gb|EEC05653.1| ATP-dependent RNA helicase, putative [Ixodes scapularis]
Length = 556
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 173/390 (44%), Positives = 240/390 (61%), Gaps = 13/390 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG QFR QL+AI A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+SPL +L+ +
Sbjct: 26 FGLKQFRLNQLEAINAALLGEDCFILMPTGGGKSLCYQLPAVVSEGVTVVISPLKSLIYD 85
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
QV L + LS +Y DL S +P LRLLYVTPE + G + L +
Sbjct: 86 QVQKLGSLDVPANHLSGDSD---DFSVYSDLRSTQPRLRLLYVTPEKVSASGRLLDALSR 142
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H+ G L+ IDEAHC+S WGHDFRP Y+KLS LR VP++ALTATA P+V+ D++
Sbjct: 143 LHANGRLSRFVIDEAHCVSQWGHDFRPDYKKLSVLREKFSGVPMMALTATATPRVRTDIL 202
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
L +++P SFNRPNL YE+R K ++ V++ I+YC R C
Sbjct: 203 HQLGMRDPKWFLQSFNRPNLRYEIRLKSGKVGTAREVLEVVEGKFARQSGIIYCFSRKEC 262
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
D+L+ LS G+ AYHAGL+D R++V WI + +VV AT+AFGMG+D+ DVR V
Sbjct: 263 DDLAEELSKNGVPAVAYHAGLDDPKRNAVQQRWIDDKVRVVCATIAFGMGVDKPDVRFVV 322
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H+ +PKSME FYQESGRAGRD P+ LL+Y D +R+ ++ +++ N + T
Sbjct: 323 HYTLPKSMEGFYQESGRAGRDGRPASCLLFYSFADVQRIRRMVEMDKASNYAAKQTH--- 379
Query: 392 SKKSISDFSQMVDYCEG-SGCRRKKILESF 420
+S+ MV++CE + CRR ++ +F
Sbjct: 380 ----LSNLWHMVNFCENRTDCRRAQVSRNF 405
>gi|186683728|ref|YP_001866924.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
gi|186466180|gb|ACC81981.1| ATP-dependent DNA helicase RecQ [Nostoc punctiforme PCC 73102]
Length = 719
Score = 347 bits (891), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 181/406 (44%), Positives = 259/406 (63%), Gaps = 16/406 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ +FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDRFRPGQRQIIEDALQNRDLLIVMPTGGGKSLCFQLPALIKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV GL+ I FL SS +V+++ E + SGK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEGLRNNNINATFLNSSLNPYKVRSR-EEAILSGK--VRLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + + AIDEAHC+S WGHDFRP YR++ SLR PDVP LALTATA
Sbjct: 124 RFLPFLDLVKEKIGIAAFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + AI+Y
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRSKT--KSAYAELLELIREN-EGSAIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L IS +YHAGL+D+ RSS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKISALSYHAGLSDEERSSNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF++P+++E++YQESGRAGRD PS+ L++ D + +E+ + + Q
Sbjct: 301 PDVRLVIHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFSDIKTIEWSIDQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ ++ Q++DY +G+ CRR L FGE+ G A+
Sbjct: 361 IAKQQ---------LRQVIDYAQGTVCRRTIQLGYFGERFDGNCAN 397
>gi|434406622|ref|YP_007149507.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
gi|428260877|gb|AFZ26827.1| ATP-dependent DNA helicase RecQ [Cylindrospermum stagnale PCC 7417]
Length = 723
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 254/402 (63%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 7 LEQALKYHFGYDQFRPGQRQIIEDALQNRDLLIIMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS +V+++ E L GK ++LLYV PE +
Sbjct: 67 PLIALMQDQVEALRTNNISATFLNSSLNAFKVRSR-EEALLQGK--IKLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + ++ AIDEAHC+S WGHDFRP YR++ SLR PDVP LALTATA
Sbjct: 124 RFLPLLDLVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + I+Y
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRTKT--KTAYAELLGIIRENQGS-GIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L IS +YHAGL D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTLKLQHDKISVLSYHAGLTDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD PS+ L++ D + +E+ +++ Q
Sbjct: 301 PDVRFVIHYDLPRNLESYYQESGRAGRDDEPSRCTLFFSFSDIKTIEWSINQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
S ++ Q++DY EG+ CRR L FGE+ G
Sbjct: 361 ISKQQ---------LRQVIDYAEGTDCRRTIQLGYFGERFPG 393
>gi|363740670|ref|XP_001233565.2| PREDICTED: ATP-dependent DNA helicase Q5 [Gallus gallus]
Length = 1052
Score = 347 bits (890), Expect = 7e-93, Method: Compositional matrix adjust.
Identities = 183/406 (45%), Positives = 249/406 (61%), Gaps = 12/406 (2%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 29 FGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALI 88
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A F L
Sbjct: 89 QDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLN 148
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA +VQ D+
Sbjct: 149 SLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQVQDDI 208
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT-----CA 261
+ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T C
Sbjct: 209 VTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYANLKDFCLKALEVKNTTGVYSGCG 268
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT++FGMG
Sbjct: 269 IVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMG 328
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K SK
Sbjct: 329 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIKKELSKI 388
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ T + S K ++ F +V +CE GCR I + FG+ C
Sbjct: 389 QEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPC 434
>gi|427727826|ref|YP_007074063.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
gi|427363745|gb|AFY46466.1| ATP-dependent DNA helicase RecQ [Nostoc sp. PCC 7524]
Length = 718
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 179/403 (44%), Positives = 257/403 (63%), Gaps = 18/403 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDQFRPGQRQIIEDALQNRDLLVVMPTGGGKSLCFQLPALMKSGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYED-LDSGKPSLRLLYVTPELTAT 143
PLIALM++QV L+ I+ FL SS QV+++ ED + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNPYQVRSR--EDAILNGK--VRLLYVAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L +H + +++ AIDEAHC+S WGHDFRP YR+L SLR P+VP+LALTATA
Sbjct: 123 ERFLPFLDLVHEKIGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPMLALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ + + I+
Sbjct: 183 TDRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRAKS--KQAYAELLELIR-DTEGSVII 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +EL+ L I+ YHAGL D RS +I +V+VAT+AFGMGI+
Sbjct: 240 YCLTRKKVEELTFKLQNDKIAVLPYHAGLPDAERSQNQTRFIRDDVRVMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ + + Q
Sbjct: 300 KPDVRLVVHFDIPRNLESYYQESGRAGRDGEPSRCTIFFSFADIKTIEWSIEQKTEPQEQ 359
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ QM+DY EG+ CRR L FGE+ G
Sbjct: 360 LIARQQ---------LRQMIDYAEGTDCRRTIQLGYFGERFAG 393
>gi|354566185|ref|ZP_08985358.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
gi|353546693|gb|EHC16141.1| ATP-dependent DNA helicase RecQ [Fischerella sp. JSC-11]
Length = 719
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 176/402 (43%), Positives = 256/402 (63%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L++HFG+ FR Q + ++ LS RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEKALKYHFGYDNFRPGQREIVEDALSNRDLLIIMPTGGGKSLCFQLPALIKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L++ G+A FL SS + Q +++ + + GK ++LLYV PE +
Sbjct: 67 PLIALMQDQVEALRKNGVAATFLNSSLNSYQTRSR-EQYILQGK--VKLLYVAPERLVSD 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L IH + ++ AIDEAHC+S WGHDFRP YR+L LR DVP A TATA
Sbjct: 124 RFLPFLDLIHHQVGISAFAIDEAHCVSEWGHDFRPEYRQLILLRKRYADVPTWAFTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L LQNP + +SFNR NL+YEVR K +AYA+L +++ + + I+Y
Sbjct: 184 DRVRNDIIQQLGLQNPSIHIASFNRQNLYYEVRPKK--KNAYAELLELIR-DSEGSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DE++ L +S YHAGL D+ R+ +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDEITFKLQHDQVSALPYHAGLTDEERTQNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V HF+IP+++E++YQESGRAGRD S+ L++ D + +EF++++ Q
Sbjct: 301 PDVRFVIHFDIPRNLESYYQESGRAGRDGEASRCTLFFSYADVKIIEFLINQKSEPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ QM+DY EG+ CRR L FGE+ LG
Sbjct: 361 IAKQQ---------LRQMIDYAEGTDCRRTIQLSYFGERFLG 393
>gi|298251484|ref|ZP_06975287.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
gi|297546076|gb|EFH79944.1| ATP-dependent DNA helicase RecQ [Ktedonobacter racemifer DSM 44963]
Length = 739
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 173/397 (43%), Positives = 244/397 (61%), Gaps = 13/397 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG+ F Q + I+ LSGRD F LMPTG GKS+ YQ+ L G+ +++S
Sbjct: 4 LEQHLKHYFGYEAFLPGQREVIEQALSGRDAFALMPTGAGKSLIYQLSGLLLNGVSIIIS 63
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV LK GI FL+S + +++ ++ GK L+L+YV PE T
Sbjct: 64 PLIALMQDQVDRLKTNGIPATFLNSALSASERSQREREILQGK--LKLVYVAPERLLTQT 121
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F++ L ++ R L L+A+DEAHC+S WGHDFRP YR+L LR P VP +ALTATA
Sbjct: 122 FLTFLDEVQERVGLGLIAVDEAHCVSEWGHDFRPEYRQLGRLRVRYPQVPAMALTATATE 181
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ+D++ L L +P V +S+NRPNL+YEVR K + Y++L L+ D I+YC
Sbjct: 182 RVQEDILTQLKLNDPYVEVASYNRPNLYYEVRQKH--QNTYSELVQFLREQSDAPVIIYC 239
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D ++ L GI YHAGL+ R+ D +I V+VAT+AFGMGI +
Sbjct: 240 QSRKNVDTIADSLQHHGIRALPYHAGLSTDERTRNQDSFIHDDVPVLVATIAFGMGIAKP 299
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++PKS+E +YQESGRAGRD L ++ +L+Y DR + EFIL++ +
Sbjct: 300 DVRAVIHYDMPKSLEGYYQESGRAGRDGLEARCILFYQHGDRMKYEFILAQKED------ 353
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E K+ Q++ Y E +GCRRK +L FGE
Sbjct: 354 ---EHELLKARQQIQQVITYSESTGCRRKALLAYFGE 387
>gi|113476788|ref|YP_722849.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
gi|110167836|gb|ABG52376.1| ATP-dependent DNA helicase RecQ [Trichodesmium erythraeum IMS101]
Length = 731
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/419 (40%), Positives = 262/419 (62%), Gaps = 17/419 (4%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
M ++Q++ N+P +L + L+ +FG+ FR Q IQ L +D +MPTGGGKS
Sbjct: 1 MSVSNQSEFNQP-----SLEQHLKNYFGYDSFRPGQKQIIQTALQQKDLLIIMPTGGGKS 55
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+C+Q+PAL KPG+ +VVSPLI+LM++QV LK+ GIA FL+ST + + D+ G
Sbjct: 56 LCFQMPALLKPGLTIVVSPLISLMQDQVESLKDNGIAATFLNSTLDLTETRRRSTDIILG 115
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
K ++LLYV PE + F+ L+ I S+ ++ AIDEAHC+S WGHDFRP YR+L L
Sbjct: 116 K--IKLLYVAPERLLSEKFLEFLELISSQQGISTFAIDEAHCVSEWGHDFRPEYRQLKLL 173
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA 247
R PDVPI+ALTATA +V++D+ L LQ P + +SF R NL+YEVR K + +A
Sbjct: 174 RETYPDVPIMALTATATKRVREDITTQLNLQKPYIHIASFFRSNLYYEVRQKTSAKNTFA 233
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
++ +++ G + IVYC R DE++ L +S AYHAG+ D+ R++ +I
Sbjct: 234 EILQIIRTIGGS-GIVYCNSRKRVDEIAYKLRQNNVSALAYHAGMTDEERTTNQTKFIRD 292
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
V+VATVAFGMGID+ DVR V H+++ K++E +YQE+GR+GRD P++ +L++ D+
Sbjct: 293 DVDVIVATVAFGMGIDKPDVRFVIHYDLSKNIEGYYQETGRSGRDGEPAQCILFFSYGDK 352
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
R +E+++ + + Q + ++ ++++Y E + CR + +L FGE G
Sbjct: 353 RSIEYLIGQKVDEQEQRIAEQQ---------LRRIINYAEATECRHRVLLSYFGEDFPG 402
>gi|384253210|gb|EIE26685.1| ATP-dependent DNA helicase, partial [Coccomyxa subellipsoidea
C-169]
Length = 513
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 177/395 (44%), Positives = 245/395 (62%), Gaps = 13/395 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+A FR QL+AI A + G DCF LMPTGGGKS+CYQ+PAL G+ +V+SPL++L+++
Sbjct: 9 FGNASFRPNQLEAINATIKGNDCFVLMPTGGGKSLCYQLPALLTNGVTVVISPLVSLIQD 68
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKK 152
QV L++ GIA +LS TQ + I + L P +R+L+VTPE A + M L
Sbjct: 69 QVFHLQQAGIACGYLSGTQDYEDSRSIMQRLQQTPPDIRVLFVTPEKVARSDYLMRTLDV 128
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+HSR LL+ VA+DEAHC+S WGHDFRP Y+ LS + P VP+LALTATA P+VQ DV+
Sbjct: 129 LHSRRLLDRVAVDEAHCVSQWGHDFRPDYKGLSVFKRRYPMVPLLALTATATPRVQHDVV 188
Query: 213 ESLCLQNPLVLKSSFNRPNLFY---EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
+ L L++ +V +SSFNR NL Y + K++ D + C + C IVYCL R
Sbjct: 189 QQLSLKHCVVFRSSFNRQNLRYGKFDDAIKEMEDRIARNFCHHGRVQ---CGIVYCLSRN 245
Query: 270 TCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++A L C YHA L + R V +W R Q++VAT+AFGMGI++ DVR
Sbjct: 246 DCEKVAAELQEYSRGCVFHYHAALTQQEREEVQANWTHDRMQIIVATIAFGMGINKPDVR 305
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF++PKS+E ++QE+GR GRD + +LYY D RM +L QS Q+ S
Sbjct: 306 FVMHFSVPKSLEGYHQETGRGGRDGKVATCILYYSYADAVRMRHML--KQSAEEQNTSPA 363
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ ++ + M+ YCE CRR +L FGE
Sbjct: 364 QLQC--NMDSLNHMIAYCEEQVECRRSVLLAHFGE 396
>gi|292612098|ref|XP_694922.4| PREDICTED: ATP-dependent DNA helicase Q5-like [Danio rerio]
Length = 936
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 257/414 (62%), Gaps = 11/414 (2%)
Query: 28 KLLRWHFGHAQFRDKQLD-AIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ HFG +FR +Q + A+ A+L G RD F MPTG GKS+CYQ+PAL G+ LV+S
Sbjct: 6 RALKTHFGFEKFRSRQQEEAVNALLQGDRDVFVCMPTGAGKSLCYQLPALMASGVTLVIS 65
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV LK + ++S + + +I DL+S P L+LLY+TPE+ A+P
Sbjct: 66 PLIALIQDQVEHLKALNVPARSINSKLPLAERRQILADLESETPRLKLLYITPEMVASPS 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SRGLL +A+DEAHC+S WGHDFRP Y KL LR+ L + +ALTATA
Sbjct: 126 FQPVLSSLSSRGLLGYLAVDEAHCVSQWGHDFRPDYLKLGDLRSRLQGIRCIALTATAPK 185
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDT---- 259
+V++D+ SL L++PLV + R NL Y+V ++DLL + Y L + K G+T
Sbjct: 186 RVKEDIERSLRLRSPLVFSTPVFRKNLKYDVIFRDLLPEPYVHLLAFAKEALGGNTAEKG 245
Query: 260 ---CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
C IVYC R +C+E++ L+ GI+ YHAGL RS DW++ + ++VAT+
Sbjct: 246 FAGCGIVYCRTRESCEEVAHKLTKLGIAAKPYHAGLKSGDRSENQADWMADKVPIIVATI 305
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
+FGMG+D+ +VR V H+N+ KS+ ++YQESGRAGRD LPS +YY DR ++ F++ K
Sbjct: 306 SFGMGVDKANVRFVVHWNLAKSLASYYQESGRAGRDGLPSSCRIYYSPKDRDQLNFLIRK 365
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
S+ + + + K I DF MV +CE GCR I FG + C +
Sbjct: 366 EISRKQEKRGSEKEQDKAPILDFEAMVAFCEQEGCRHATISTFFGNEKPNCAGA 419
>gi|291237646|ref|XP_002738744.1| PREDICTED: Bloom syndrome protein-like [Saccoglossus kowalevskii]
Length = 1050
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/408 (42%), Positives = 255/408 (62%), Gaps = 13/408 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG +FR QL+AI A L +DCF LMPTGGGKS+CYQ+P G+
Sbjct: 450 HSKE-MLKVFRQIFGLHKFRTNQLEAINAALLSKDCFILMPTGGGKSLCYQLPGSISKGL 508
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
LVVSPL +L+++QV L + + LS + IY +L P L+LLYVTPE
Sbjct: 509 TLVVSPLKSLIQDQVQKLCLRDVPSAHLSGDASPNEVELIYRELSRRDPQLKLLYVTPEK 568
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++++ +S L+ ++SRG+L+ IDEAHC+S WGHDFRP Y++L+ LR P VPI+AL
Sbjct: 569 ISSSSKLVSTLENLYSRGMLSRFVIDEAHCVSQWGHDFRPDYKRLNKLRELFPTVPIMAL 628
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA P+V+ D+++ L +++P+ SFNR NL Y + Y D ++++A
Sbjct: 629 TATATPRVRADIVKQLKIRSPIWFIQSFNRSNLKYSI-YPKKPSKVTQDCINLIQARFAG 687
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R C++++A LS+ GIS AYHAGL +R+ W+ +VV AT+AF
Sbjct: 688 ESGIIYCLSRNECEKVAAELSSAGISAKAYHAGLESNSRTYTQQAWVRDEYKVVCATIAF 747
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E FYQESGRAGRD + +L+Y D R+ ++ + +
Sbjct: 748 GMGIDKPDVRFVIHHSLPKSIEGFYQESGRAGRDGNIAHCILFYSYQDMTRLRKVMER-E 806
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVL 425
+ N ++ I + +MV YCE + CRR ++LE GE+V+
Sbjct: 807 NDNFEAIRVH-------IENLQRMVQYCENETDCRRSQLLEYLGEKVI 847
>gi|428310069|ref|YP_007121046.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
gi|428251681|gb|AFZ17640.1| ATP-dependent DNA helicase RecQ [Microcoleus sp. PCC 7113]
Length = 757
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 264/416 (63%), Gaps = 16/416 (3%)
Query: 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71
S Q +++ ++L + L+ FG+ FR Q ++ L+ RD +MPTGGGKS+C+Q
Sbjct: 41 SSAQNQSIMYQLQSLEEALKHFFGYDAFRPGQRQIVEEALAQRDLLVIMPTGGGKSLCFQ 100
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ-VKTKIYEDLDSGKPS 130
+PAL KPG+ +VVSPLIALM++QV L + GI FL+ST + V+++ L+ GK
Sbjct: 101 LPALLKPGLTVVVSPLIALMQDQVDALVDNGIGATFLNSTLSWDDVRSRELAILN-GK-- 157
Query: 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
++LLYV PE F+ L+K+ ++ ++ AIDEAHC+S WGHDFRP YR++ LR
Sbjct: 158 IKLLYVAPERLLGEKFLPFLEKVRAQIGISAFAIDEAHCVSEWGHDFRPEYRQMKQLRQR 217
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
PD+PILALTATA +VQ+D++E L L+ P + +SFNRPNL+YEV+ K+ +Y L
Sbjct: 218 YPDIPILALTATATKRVQQDILEQLTLRQPGIHIASFNRPNLYYEVQPKE--RHSYNQLL 275
Query: 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
+K++ + IVYCL R DE++ L GI YHAG++D+AR++ +I Q
Sbjct: 276 KKIKSHKGS-GIVYCLSRRAVDEVAFRLQKDGIDALPYHAGMSDEARATNQTRFIRDDVQ 334
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
V+VAT+AFGMGI++ DVR V H+++P ++E +YQESGRAGRD P+ L++G + R +
Sbjct: 335 VMVATIAFGMGINKPDVRFVIHYDLPHNLERYYQESGRAGRDGEPAHCTLFFGAGNIRTI 394
Query: 371 EFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
++++ + Q + ++ Q++DY EG+ CRR L FGE+ G
Sbjct: 395 DYLIEQKPDPKEQRVARQQ---------LRQVIDYAEGTDCRRTIQLRYFGERFKG 441
>gi|330795187|ref|XP_003285656.1| hypothetical protein DICPUDRAFT_5670 [Dictyostelium purpureum]
gi|325084382|gb|EGC37811.1| hypothetical protein DICPUDRAFT_5670 [Dictyostelium purpureum]
Length = 529
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 180/394 (45%), Positives = 244/394 (61%), Gaps = 11/394 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG QFR+ Q + I +VL +D F LMPTGGGKS+CYQIP L + G+ +VVSPLI+L+E+
Sbjct: 5 FGFNQFRENQREIINSVLDSKDTFVLMPTGGGKSLCYQIPGLYQQGVTIVVSPLISLIED 64
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKK 152
QV L L S T K++ DL S P RLLYVTPE A+ FM L
Sbjct: 65 QVKFLLALDYPAAALCSGITSDDAKKVFRDLRSNSPKTRLLYVTPERVASNETFMDILGD 124
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ +G + IDEAHC+S WGHDFRP Y++LS LR P VPILALTATA KV+ D++
Sbjct: 125 LYQKGKFMRIVIDEAHCVSQWGHDFRPDYKELSILRKNFPSVPILALTATATEKVRNDII 184
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
+L ++ P+ K SFNRPNL+Y V K D + +K D I+YCL + C
Sbjct: 185 LNLNMKKPVCFKQSFNRPNLYYHVMKKP--KDVSKQMAEFIKKQYPDKSGIIYCLSKYDC 242
Query: 272 DELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
+++S L+ GI A YHAG+ +R+ V D W R +V+VAT+AFGMGI++ DVR V
Sbjct: 243 EKISGDLNTEYGIKSAYYHAGMEIHSRNQVQDRWQKGRIKVIVATIAFGMGINKPDVRFV 302
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H +IPKS+E +YQESGRAGRD L S +LYY D+ R+E ++ + +N ++ +E
Sbjct: 303 FHHSIPKSLEGYYQESGRAGRDGLKSHCILYYKWADKLRIETLIMLSSKENGTHYNLKE- 361
Query: 391 SSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
S ++ ++MV YCE + CRR L FGE+
Sbjct: 362 ----SKTNLNKMVSYCENDTDCRRSLQLSYFGEK 391
>gi|332023927|gb|EGI64145.1| Bloom syndrome protein-like protein [Acromyrmex echinatior]
Length = 1254
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 182/407 (44%), Positives = 248/407 (60%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 513 HSQEML-KIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLNVGL 571
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LS + T IY +L +P+L++LYVTPE
Sbjct: 572 TIVISPLKSLILDQVQKLISLDIPAAHLSGSITDNQAEAIYRELSKKEPALKILYVTPEK 631
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + L ++ R LL IDEAHC+S WGHDFRP Y+KL LRN P VP +AL
Sbjct: 632 ISASQKFCNTLTILYERELLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRNNYPKVPTMAL 691
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + NP SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 692 TATATPRVRTDILHQLGMTNPKWFMSSFNRPNLRYSIISKKGKNCSDEIVAMIMTKFK-- 749
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+TC IVYCL R C++ +A++ GI +YHAGL+D RS+ WIS V+ AT+
Sbjct: 750 -NTCGIVYCLSRKDCEDYAAHMKKNGIKVLSYHAGLSDTQRSNCQGKWISDEVHVICATI 808
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E++YQESGRAGRD + +L+Y D R+ + +
Sbjct: 809 AFGMGIDKPNVRFVIHAALPKSIESYYQESGRAGRDGEIADCILFYHYADMHRIRKMFEQ 868
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + N Q ST + + +MV +CE + CRR L FGE
Sbjct: 869 D-NPNPQVISTH-------MDNLFKMVAFCENRTDCRRSLQLNYFGE 907
>gi|434399695|ref|YP_007133699.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
gi|428270792|gb|AFZ36733.1| ATP-dependent DNA helicase RecQ [Stanieria cyanosphaera PCC 7437]
Length = 708
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 251/401 (62%), Gaps = 14/401 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG+ FR Q + I+ L+ +D +MPTGGGKS+C+Q+PAL KPG+ LVVS
Sbjct: 4 LEKALKHYFGYDSFRPGQKEIIEETLNNQDLLIIMPTGGGKSLCFQLPALLKPGLTLVVS 63
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV LK++GI FL+ST + Y + GK ++LLYV PE
Sbjct: 64 PLIALMQDQVDALKDRGIDATFLNSTLDYEEMRSRYGAILQGK--IKLLYVAPERLLAEK 121
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F + L KI + ++ +AIDEAHCIS WGHDFRP YR+L R P VP+LALTATA
Sbjct: 122 FRTFLDKIANNIGISTIAIDEAHCISEWGHDFRPEYRQLKQFRQRYPQVPLLALTATATK 181
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ+D++E L LQNP V +SFNR N+ Y+V+ K +Y L +++ IVYC
Sbjct: 182 RVQQDIIEQLGLQNPSVHLNSFNRFNIHYQVQPKQ--QRSYHQLLQEIRSQSG-AGIVYC 238
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++ L GI YHAG+ D+ R+ ++ QV+VAT+AFGMGI++
Sbjct: 239 LSRRNVEEVAYKLQKDGIKALPYHAGMTDEKRTINQTRFLRDDVQVMVATIAFGMGINKP 298
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++P+S+E FYQESGRAGRD + S+L++ M D +++++++ + Q
Sbjct: 299 DVRFVFHYDLPRSLENFYQESGRAGRDGESATSILFFSMGDWKKIDYLIEQKPDPQEQRI 358
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ +Q++DY EG CRR +L FGE+ G
Sbjct: 359 ARQQ---------LNQVIDYAEGVDCRRTILLRYFGERFSG 390
>gi|156363725|ref|XP_001626191.1| predicted protein [Nematostella vectensis]
gi|156213059|gb|EDO34091.1| predicted protein [Nematostella vectensis]
Length = 424
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 176/413 (42%), Positives = 255/413 (61%), Gaps = 12/413 (2%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
L K LR F +F+ + Q A + V G +D F MPTG GKS+CYQ+PA+ PGI +V
Sbjct: 5 LKKTLRNVFKFREFKSELQQRACETVSKGLQDVFVSMPTGSGKSLCYQLPAVVAPGITIV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIAL+++QV L+ I E L+S + ++ +DL KP+++LLY+TPEL AT
Sbjct: 65 FSPLIALIQDQVTYLRTLKITVETLNSKLPESERKRVMKDLYFVKPTVKLLYITPELAAT 124
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
PGF L ++ R LL+L A+DEAHC+S WGHDFRP Y +L LRN DV +ALTATA
Sbjct: 125 PGFQKVLDSLYKRKLLSLFAVDEAHCVSQWGHDFRPDYLRLGKLRNKYKDVAWVALTATA 184
Query: 204 APKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------- 255
+V++D++ +L +Q N V KS RPNL+Y++ +K+LL+D YADL A
Sbjct: 185 TSRVKEDILTALHMQSNVAVFKSQCYRPNLYYDISFKELLEDPYADLKQFADAALEDEDS 244
Query: 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
I+YC R C E+++ LS G+S YHAGL R V +W+ + V+ A
Sbjct: 245 GEAKGSGIIYCRTRDACQEVASRLSRKGLSAKPYHAGLKSDKRDKVQQEWMEGKVAVICA 304
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T++FGMG+D+ DVR V H+++P+SME +YQESGRAGRD PS LYY +R ++ F++
Sbjct: 305 TISFGMGVDKGDVRFVAHWSLPQSMEGYYQESGRAGRDGQPSYCRLYYSRAERDQVLFLI 364
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ K + + +++ +S F +V+YCE CR +I + FG+++ C
Sbjct: 365 KNDMKKRLKKANAAQKNKAVQVS-FQAVVEYCEEPSCRHGRIAKYFGDEMPQC 416
>gi|167540323|ref|XP_001741831.1| ATP-dependent DNA helicase recQ [Entamoeba dispar SAW760]
gi|165893416|gb|EDR21673.1| ATP-dependent DNA helicase recQ, putative [Entamoeba dispar SAW760]
Length = 508
Score = 344 bits (883), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 240/389 (61%), Gaps = 21/389 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR +Q + I + L +D +MPTGGGKS+C+Q+ + I +V+SPLIALM+N
Sbjct: 32 FNIQSFRPQQREIILSTLQHKDTVVIMPTGGGKSLCFQLQPVLTERITIVISPLIALMQN 91
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV GL ++GI L+ST + TK+ L+S P L LLYVTPE T F + +KK+
Sbjct: 92 QVDGLNKRGITSFILNSTLSKSEATKVLSLLNSSNPELYLLYVTPEQIKTQRFQNIMKKL 151
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+S L + A+DEAHCIS WGHDFRPSY +LS L+ PD+PI+ALTATA PKV++D+++
Sbjct: 152 YSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIALTATATPKVKEDIIK 211
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL L+NP + SSF+RPN++++V YKDL + L +L + I+YC R C+
Sbjct: 212 SLELKNPKIFTSSFDRPNIYFKVIYKDLYETPIQILTQILHQHEKEGGIIYCSTRMECEL 271
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ Y+S G A YHAG+ + R ++ W + VVVAT+AFGMGIDR DVR V H+
Sbjct: 272 IEKYISTNGYPVAKYHAGMKSEERETIQKKWENGEVNVVVATIAFGMGIDRGDVRFVIHW 331
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
NIPK++E F QE+GRAGRD P++S++ + DD R E L++ S+
Sbjct: 332 NIPKTIEGFMQEAGRAGRDGKPAESIILFSNDDFER-EVALNQETSE------------- 377
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + C CRRK +L+ FGE
Sbjct: 378 -------VIRELCVECSCRRKCLLKYFGE 399
>gi|157104176|ref|XP_001648286.1| blooms syndrome DNA helicase [Aedes aegypti]
gi|108880401|gb|EAT44626.1| AAEL004039-PA [Aedes aegypti]
Length = 1406
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 186/410 (45%), Positives = 248/410 (60%), Gaps = 19/410 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E + +L R FG FR QL I A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 657 HSQE-MAELFRTKFGLQSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPALLTNGV 715
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPL +L+ +QV L I LS + + +IY DL S +P ++LLYVTPE
Sbjct: 716 TIVVSPLKSLILDQVNKLSSLDIEAAHLSGNISYAEEQRIYYDLQSPRPKMKLLYVTPEK 775
Query: 141 TATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++ G F + L +H+ L IDEAHC+S+WGHDFRP Y+KLS LR P +PI+AL
Sbjct: 776 ISSSGRFQNVLSGLHAMKQLARFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPSIPIMAL 835
Query: 200 TATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA P+V+ DV++ L L++ SFNRPNL Y VR K + + + K
Sbjct: 836 TATANPRVRVDVIKQLRLKSDTKWFLCSFNRPNLKYIVRPKQGVATKQEIIDLIKKKYPR 895
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL + CD+L+A + + GIS +YHAGL+D R S DWI+ + +VV AT+AF
Sbjct: 896 ASGIVYCLAKKDCDQLAAEMKSAGISAKSYHAGLSDSQRESTQKDWIADKTKVVCATIAF 955
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEFIL 374
GMGID+ DVR V H +IPKS+E +YQE+GRAGRD S +LYY D R+ M+F
Sbjct: 956 GMGIDKPDVRYVIHHSIPKSIEGYYQEAGRAGRDGDFSTCILYYNYSDMLRFRKMMDF-- 1013
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+S F + K +++ +MVDYCE + CRR + L F E
Sbjct: 1014 -----DSSIPFEAK----KVHVNNLFRMVDYCENVTDCRRSQQLNYFAEH 1054
>gi|390349584|ref|XP_795300.3| PREDICTED: ATP-dependent DNA helicase Q5-like [Strongylocentrotus
purpuratus]
Length = 1223
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 253/412 (61%), Gaps = 18/412 (4%)
Query: 34 FGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG+A F+ + Q + V + D F LMPTG GKS+CYQ+PA K G+ LV+SPLIAL+
Sbjct: 67 FGYASFKSELQKKGTEEVFKAKKDVFILMPTGAGKSLCYQLPATCKKGVTLVISPLIALI 126
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
E+Q+ L E GI E L+S + + DL S KP +++LY+TPE AT FM+ LK
Sbjct: 127 EDQLTHLDELGIRAESLNSKIPAAKRKMVMSDLYSKKPKIKMLYITPETAATSTFMTILK 186
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+++RGL N + +DEAHC+S WGHDFRP Y KL +L P V +ALTATA V+KD+
Sbjct: 187 NLNNRGLFNGIVVDEAHCVSQWGHDFRPCYLKLGALHKEYPSVACVALTATATDNVRKDI 246
Query: 212 MESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK--------ANGDTCA 261
++ L ++ P+ ++ R NLFY+V YKD+L+D L LK N C
Sbjct: 247 IQQLHMRAPVTEFRAGCFRENLFYDVVYKDVLEDPLGHLKDFGLKLLQKDEALGNASGCG 306
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R C ++ LS G+ AYH G+ R+SV + W++ + +V+VAT++FGMG
Sbjct: 307 IVYCRTRDACVTVAGSLSRQGLISRAYHGGMKAADRTSVQEQWMNGQVKVIVATISFGMG 366
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK----- 376
+D+ VR V H+NIPKSM +YQESGRAGRD +PS+ LYY +R ++ F++++
Sbjct: 367 VDKATVRFVAHYNIPKSMAGYYQESGRAGRDGIPSRCRLYYSRQERNQVAFLITREMACA 426
Query: 377 NQSKNSQSFSTRE-RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
N K + FS+ + SK S+ F +V +CE + CR + I + F +++ C
Sbjct: 427 NSKKRKRKFSSSPGKPSKASMQSFEALVKFCEEAKCRHESIAKYFDDKLPSC 478
>gi|290991859|ref|XP_002678552.1| predicted protein [Naegleria gruberi]
gi|284092165|gb|EFC45808.1| predicted protein [Naegleria gruberi]
Length = 424
Score = 343 bits (881), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 246/396 (62%), Gaps = 19/396 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG FR QL+AI A LSGRD F +MPTGGGKS+CYQ+PA+ + G+ +V+SPL++
Sbjct: 17 FGIPSFRTLQLEAINATLSGRDVFIIMPTGGGKSLCYQLPAIIDVGSSGGVTIVISPLLS 76
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMS 148
L+++QV+ L I FL+S Q + IY +L S PS RLLYVTPE ++ + F++
Sbjct: 77 LIQDQVMSLINLDIPAVFLTSEQDSETTKDIYRELGSRNPSFRLLYVTPEKISRSETFLN 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L+++H RGL V +DEAHC+S+WGHDFRP YRKL ++ PDVP++ALTATA VQ
Sbjct: 137 ILRRLHERGLFKRVVVDEAHCVSNWGHDFRPDYRKLGIFKDEFPDVPLIALTATATGIVQ 196
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL-KANGDTCAIVYCLE 267
+D++ L ++N + LK SFNR NL+YEVR K L+ ++ + K + I+YCL
Sbjct: 197 EDIIHQLKIKNCVSLKGSFNRTNLYYEVRKKQTLEKTAKEISEFINKKYPNQSGIIYCLS 256
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C++++ L+ G Y++ + + V + W +++VAT+AFGMGI++ DV
Sbjct: 257 KKDCEKMAEELTTLGHDVGVYNSDIKAADKQEVHEKWSRDELKIIVATIAFGMGINKPDV 316
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PKS+E +YQESGRAGRD LPS +L+Y D+ R Q F
Sbjct: 317 RFVIHHSLPKSIEDYYQESGRAGRDGLPSHCILFYSYADKARQ------------QKFLE 364
Query: 388 RERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
E ++K + +++V YCE CRR L FGE
Sbjct: 365 NENTNKSGYENINKIVSYCENDCECRRVVQLRHFGE 400
>gi|196013025|ref|XP_002116374.1| hypothetical protein TRIADDRAFT_30770 [Trichoplax adhaerens]
gi|190580965|gb|EDV21044.1| hypothetical protein TRIADDRAFT_30770 [Trichoplax adhaerens]
Length = 752
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 179/430 (41%), Positives = 263/430 (61%), Gaps = 35/430 (8%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H + ++ R FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA+ G+
Sbjct: 65 HFSNKMKEIFRSKFGLHKFRTNQLEAINAALLGYDCFILMPTGGGKSLCYQLPAIVNDGV 124
Query: 81 VLVVSPLIALMENQVIGLKEKGI-AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPL +L+++QV GL G+F + TM+ ++Y++L PS+ LLY+TPE
Sbjct: 125 TVVISPLRSLIQDQVQGLLNLDFPVGQF-TGEMTMKENNEMYQELYKRIPSISLLYLTPE 183
Query: 140 -LTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS--------------------SWGHDFR 178
L+A+ +S L+ +H R +L+ IDEAHCIS WGHDFR
Sbjct: 184 KLSASSKLLSVLRSLHLRKMLSRFVIDEAHCISQVTTYASCSLCIYNISCTYLQWGHDFR 243
Query: 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 238
P Y+KLS++R P VP++ALTATA P+V+KD++ L + NP+ SFNRPNL Y V
Sbjct: 244 PDYKKLSAIRENFPGVPVMALTATATPRVRKDILNQLKVPNPIWFVQSFNRPNLQYSVLP 303
Query: 239 KDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
K+ ++ ++ + + IVYCL R CD +S+ L GI+ +YHAGL+ K R
Sbjct: 304 KNKC--TAQEIIKIVNSQFRNESGIVYCLSRNECDRVSSTLREAGIAALSYHAGLDAKER 361
Query: 298 SSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
++V WI+ +R ++V AT+AFGMGID+ DVR V H+++PKS E +YQESGRAGRD + +
Sbjct: 362 TNVQKRWITENRCKIVCATIAFGMGIDKADVRFVIHYSLPKSTEGYYQESGRAGRDGMLA 421
Query: 357 KSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKK 415
K +L+Y D R+ +++ + +N + + + + + +MV YCE S CRR +
Sbjct: 422 KCILFYTYGDACRIRRMINSERDQN-------QETKRVHLDNLYRMVQYCENVSDCRRVQ 474
Query: 416 ILESFGEQVL 425
+LE FGE
Sbjct: 475 LLEYFGESTF 484
>gi|449283029|gb|EMC89732.1| ATP-dependent DNA helicase Q5 [Columba livia]
Length = 1016
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 182/412 (44%), Positives = 251/412 (60%), Gaps = 12/412 (2%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
K LR FG F+ Q A V G +D F MPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 15 KTLRRVFGFETFKTSLQESATMTVARGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVIS 74
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L I L+S + Q K I DL S KP ++LLY+TPE+ A
Sbjct: 75 PLIALIQDQVDHLLALKIKACSLNSKLSAQEKKTILADLASEKPQVKLLYITPEMAAASS 134
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA
Sbjct: 135 FQPTLNSLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATK 194
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC----SVLKANG 257
+VQ+D++ +L L+ PL K+ R NLFY+V++K+LL D Y D C V ++G
Sbjct: 195 QVQEDIVAALKLKQPLSTFKTPCFRSNLFYDVQFKELLTDPYTNLKDFCLKALEVKNSSG 254
Query: 258 --DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT
Sbjct: 255 VYSGCGIVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVAT 314
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 315 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSCCRLYYSRNDRDQVSFLIK 374
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
K + + T + S K ++ F +V++CE GCR I + FG+ C
Sbjct: 375 KELANIQEKKGTLKESDKAVMTAFDAIVNFCEELGCRHAAIAKYFGDVTPPC 426
>gi|428781470|ref|YP_007173256.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
gi|428695749|gb|AFZ51899.1| ATP-dependent DNA helicase RecQ [Dactylococcopsis salina PCC 8305]
Length = 713
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 250/397 (62%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q D IQAV + +D +MPTGGGKS+CYQ+PAL KPG+ +VVSPLIA
Sbjct: 10 LKQYFGYDQFRPGQKDVIQAVCNQQDVLVVMPTGGGKSLCYQLPALLKPGLAVVVSPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L++ GIA FL+S+ + L + +++LLY+ PE + G
Sbjct: 70 LMQDQVESLQKNGIAATFLNSS--LNPNEARSRRLSILQGNIKLLYLAPEKLVSSGAKKF 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + + L+L A+DEAHCIS WGHDFRP YR+L +LR P+VP +ALTATA +V+
Sbjct: 128 LQAVSEKQGLSLFAVDEAHCISEWGHDFRPEYRQLETLRQQFPEVPTIALTATATEQVRG 187
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D++ L L+ P + +SF+RPNL+YEV+ K Y L ++ + + IVYCL R
Sbjct: 188 DIIRQLKLKPPKIQITSFDRPNLYYEVQPKQ--RQHYNQLFKFIR-HQNGSGIVYCLSRR 244
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L GIS YHAG+ D R ++ QV+VAT+AFGMGID+ D+R
Sbjct: 245 RVEEVAFRLEKDGISALPYHAGMTDGNRRDYQTRFLRDDVQVMVATIAFGMGIDKPDIRF 304
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+++P+++E +YQE+GRAGRD P++ LL +G D +E+++S+ + + SQ + ++
Sbjct: 305 VAHYDLPRNLENYYQEAGRAGRDNEPAQCLLLFGAKDIHTIEYLISQKEEEKSQRLARQQ 364
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+M+DY EG+ CRR L FGE G
Sbjct: 365 ---------LRKMIDYAEGTDCRRTIQLSYFGEHFAG 392
>gi|428778146|ref|YP_007169933.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
gi|428692425|gb|AFZ45719.1| ATP-dependent DNA helicase RecQ [Halothece sp. PCC 7418]
Length = 709
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 250/397 (62%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q I+AV RD +MPTGGGKS+CYQ+PAL KPG+ +VVSPLIA
Sbjct: 8 LKQYFGYETFRPGQKAIIEAVYQQRDVLAVMPTGGGKSLCYQLPALLKPGLAVVVSPLIA 67
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L++ GIA FL+S+ T + + +G+ ++LLY+ PE +P +
Sbjct: 68 LMQDQVETLQKNGIAATFLNSSLTAEEARSRRLSILNGE--MKLLYLAPEKLVSPASKTF 125
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + + L+L AIDEAHCIS WGHDFRP YR+L +LR+ P +P++ALTATA +V+
Sbjct: 126 LQAVQEKHGLSLFAIDEAHCISEWGHDFRPEYRQLKTLRSLFPKIPMIALTATATERVRS 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D++ L L P V +SF+RPNL+YEV+ K Y L ++ + IVYCL R
Sbjct: 186 DIIHQLTLDQPKVQITSFDRPNLYYEVQPKQ--RQHYNQLFKFIRHQTGS-GIVYCLSRR 242
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L GIS YHAG++D RS ++ QV+VAT+AFGMGID+ D+R
Sbjct: 243 RVEEVAFRLKKDGISALPYHAGMSDGNRSDYQTRFLRDDVQVMVATIAFGMGIDKPDIRF 302
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+++P+++E +YQE+GRAGRD P++ LL +G D +E+ +S+ + + SQ + ++
Sbjct: 303 VVHYDLPRNLENYYQEAGRAGRDSEPAQCLLLFGAKDIHTIEYFISQKEDEKSQRLARQQ 362
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+++DY EG+ CRR L FGE G
Sbjct: 363 ---------LRKVIDYAEGTDCRRTIQLSYFGEHFAG 390
>gi|426248114|ref|XP_004017810.1| PREDICTED: Bloom syndrome protein [Ovis aries]
Length = 1429
Score = 343 bits (880), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 244/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ RGLL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYERGLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 902 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYAYHDVTRLKRLILMEK 1021
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1022 DGNRHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1060
>gi|407040860|gb|EKE40365.1| recQ family DNA helicase [Entamoeba nuttalli P19]
Length = 508
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 239/389 (61%), Gaps = 21/389 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR +Q + I + L +D +MPTGGGKS+C+Q+ + I +V+SPLIALM+N
Sbjct: 32 FNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERITIVISPLIALMQN 91
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV GL ++GI L+ST + TK+ L+S P L LLYVTPE T F + +KK+
Sbjct: 92 QVDGLNKRGITSFILNSTLSKSEATKVLSILNSSNPELYLLYVTPEQIKTQRFQNIMKKL 151
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+S L + A+DEAHCIS WGHDFRPSY +LS L+ PD+PI+ALTATA KV++D+++
Sbjct: 152 YSVKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIALTATATSKVKEDIIK 211
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL L+NP + SSF+RPN++++V YKDL + L +L + I+YC R C+
Sbjct: 212 SLELKNPQIFTSSFDRPNIYFKVIYKDLYETPIQILTQILHQHEKEGGIIYCSTRMECEL 271
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ Y+S G A YHAG+ + R ++ W S VVVAT+AFGMGIDR DVR V H+
Sbjct: 272 IEKYISTNGYPVAKYHAGMKSEERETIQKKWESGEVNVVVATIAFGMGIDRGDVRFVIHW 331
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
NIPK++E F QE+GRAGRD P++S++ + DD R E L++ S+
Sbjct: 332 NIPKTIEGFMQEAGRAGRDGKPAESIILFSNDDFER-EVALNQETSE------------- 377
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + C CRRK +L+ FGE
Sbjct: 378 -------IIRELCVECSCRRKCLLKYFGE 399
>gi|67475629|ref|XP_653505.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|56470462|gb|EAL48119.1| recQ family DNA helicase [Entamoeba histolytica HM-1:IMSS]
gi|449702365|gb|EMD43019.1| ATP-dependent DNA helicase recQ, putative [Entamoeba histolytica
KU27]
Length = 509
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 239/389 (61%), Gaps = 21/389 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F FR +Q + I + L +D +MPTGGGKS+C+Q+ + I +V+SPLIALM+N
Sbjct: 32 FNIQSFRPQQREIILSTLQHKDTLVIMPTGGGKSLCFQLQPVLTERITIVISPLIALMQN 91
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV GL ++GI L+ST + TK+ L+S P L LLYVTPE T F + +KK+
Sbjct: 92 QVDGLNKRGITSFILNSTLSKSEATKVLSILNSSNPELYLLYVTPEQIKTQRFQNIMKKL 151
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+S L + A+DEAHCIS WGHDFRPSY +LS L+ PD+PI+ALTATA KV++D+++
Sbjct: 152 YSIKKLGMFAVDEAHCISQWGHDFRPSYLELSYLKKTYPDIPIIALTATATSKVKEDIIK 211
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
SL L+NP + SSF+RPN++++V YKDL + L +L + I+YC R C+
Sbjct: 212 SLELKNPQIFTSSFDRPNIYFKVIYKDLYETPIQILTQILHQHEKEGGIIYCSTRMECEL 271
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ Y+S G A YHAG+ + R ++ W S VVVAT+AFGMGIDR DVR V H+
Sbjct: 272 IEKYISTNGYPVAKYHAGMKSEERETIQKKWESGEVNVVVATIAFGMGIDRGDVRFVIHW 331
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
NIPK++E F QE+GRAGRD P++S++ + DD R E L++ S+
Sbjct: 332 NIPKTIEGFMQEAGRAGRDGKPAESIILFSNDDFER-EVALNQETSE------------- 377
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + C CRRK +L+ FGE
Sbjct: 378 -------IIRELCVECSCRRKCLLKYFGE 399
>gi|218438410|ref|YP_002376739.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
gi|218171138|gb|ACK69871.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 7424]
Length = 709
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 258/408 (63%), Gaps = 16/408 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++ L L+ +FG+ FR Q + I+ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 2 MYQLNTLETALKQYFGYDNFRPGQREIIEEALENRDLLVIMPTGGGKSLCFQLPALLKPG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLI+LM++QV L + GI FL+S+ +++++ L + ++LLYV P
Sbjct: 62 VTVVVSPLISLMQDQVDALLDNGIGATFLNSSLDFSEIRSRETAIL---RNKIKLLYVAP 118
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + F L I + ++ AIDEAHC+S WGHDFRP YR+L LR P+VP+ A
Sbjct: 119 ERLLSEKFTPFLDTIAQQVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRKRYPNVPMFA 178
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +VQ+D++ L L+NP + +SFNR NL+Y+++ K+ +Y L ++A+
Sbjct: 179 LTATATKRVQQDIILQLDLKNPGIHIASFNRTNLYYDIKPKE--KRSYNQLLKYIRAHQG 236
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYC+ R DE++ L GIS YHAGL D+AR+ +I +V+VATVAF
Sbjct: 237 S-GIVYCMSRRNVDEIAFRLQNDGISALPYHAGLTDEARTLNQTRFIRDDVRVMVATVAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V HF++P+++E++YQESGRAGRD P+K LL Y + D +++E+I+ +
Sbjct: 296 GMGINKPDVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCLLLYSLGDLKKIEYIIEQKT 355
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q++DY EG+ CRR +L FGE+ G
Sbjct: 356 NPQEQKIARQQ---------LRQVIDYAEGTECRRTIVLRYFGERFKG 394
>gi|414079433|ref|YP_007000857.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
gi|413972712|gb|AFW96800.1| ATP-dependent DNA helicase RecQ [Anabaena sp. 90]
Length = 729
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 253/402 (62%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 7 LEKALKHHFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS +V+++ E + +GK ++LLYV PE +
Sbjct: 67 PLIALMQDQVEALRTNNISATFLNSSLNAYKVRSR-EEAIMNGK--IKLLYVAPERLVSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + ++ AIDEAHC+S WGHDFRP YR+L LR PDVP +ALTATA
Sbjct: 124 RFLPLLDVVKEKVGISTFAIDEAHCVSEWGHDFRPEYRQLRLLRKRYPDVPTIALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L L+ P + +SFNR NL YEVR K + AYA+L +++ N + I+Y
Sbjct: 184 DRVRADIIEQLGLKQPSIHIASFNRQNLHYEVRSKS--NRAYAELLEIVREN-EGSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DE++ L +S YHAGL+D+ RS +I +V+VATVAFGMGI++
Sbjct: 241 CLTRKKVDEITLKLQNDKVSVLPYHAGLSDEERSKNQTRFIRDDVRVMVATVAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H ++P+++E++YQESGRAGRD PSK L++ D + +E+ +++ Q
Sbjct: 301 PDVRFVVHSDLPRNLESYYQESGRAGRDDEPSKCTLFFNYGDIKTIEWSINQKPDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ Q++DY EG+ CRR L FGE+ G
Sbjct: 361 IAKQQ---------LRQVIDYAEGTDCRRTIQLSYFGERFPG 393
>gi|281350039|gb|EFB25623.1| hypothetical protein PANDA_008576 [Ailuropoda melanoleuca]
Length = 979
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/412 (43%), Positives = 251/412 (60%), Gaps = 13/412 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+SPLIAL+
Sbjct: 15 FGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVISPLIALI 74
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q K ++ DL+ KP +LLY+TPE+ A+ F L
Sbjct: 75 QDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAASASFQPTLN 134
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 135 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCVALTATATPQVQEDV 194
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CA 261
+L L+ P+ K+ R NLFY+V++K+LL D Y +L LKA G C
Sbjct: 195 FAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLLSGCG 254
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R C++L+ LS G+S AYHAGL R+ V ++W+ + V+VAT++FGMG
Sbjct: 255 IVYCRTREACEQLATELSHRGVSAKAYHAGLKAPERTLVQNEWMEEKVPVIVATISFGMG 314
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 315 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKL 374
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH 433
+ + S K ++ F +V +CEG GCR I + FG+ C H
Sbjct: 375 QEKRGNKA-SDKAAVLAFDALVTFCEGLGCRHAAIAKYFGDAPPACTKGCDH 425
>gi|395533035|ref|XP_003768569.1| PREDICTED: ATP-dependent DNA helicase Q5 [Sarcophilus harrisii]
Length = 995
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 183/418 (43%), Positives = 257/418 (61%), Gaps = 13/418 (3%)
Query: 28 KLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+S
Sbjct: 19 RTLKKIFGFDSFKTNLQESATLAVVKGEKDVFVCMPTGAGKSLCYQLPALLAAGITIVIS 78
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIAL+++QV L + L+S + Q K KI DL++ KP +LLY+TPE+ A+
Sbjct: 79 PLIALIQDQVDHLLALKVCVCSLNSKLSAQEKKKILMDLENEKPQTKLLYITPEMAASAS 138
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR +P P +ALTATA
Sbjct: 139 FQPILNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRKRIPHAPCVALTATATQ 198
Query: 206 KVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT---- 259
+VQ+DV+ +L L+ P+ + K+ R NLFY+V++KDLL D Y +L LKA G
Sbjct: 199 QVQEDVVTALKLRQPIAIFKTPCFRANLFYDVQFKDLLGDPYGNLKDFCLKALGQKNDKG 258
Query: 260 ----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
C IVYC R C++++ LS+ GI AYHAGL + R V ++W+ + V+VAT
Sbjct: 259 AFPGCGIVYCRMREACEQVAKELSSRGIKAKAYHAGLKTEDRMLVQNEWMEEKVPVIVAT 318
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++
Sbjct: 319 ISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGQPSWCRLYYSRNDRDQVCFLIK 378
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH 433
K SK + ++ K S++ F +VD+CE GCR I + FG+ C H
Sbjct: 379 KEISKLQEKRGNKD-CDKASMAAFESLVDFCEKVGCRHAAIAKYFGDAPPSCSKGCDH 435
>gi|411116551|ref|ZP_11389038.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
gi|410712654|gb|EKQ70155.1| ATP-dependent DNA helicase RecQ [Oscillatoriales cyanobacterium
JSC-12]
Length = 741
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 254/403 (63%), Gaps = 11/403 (2%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG+ FR Q I+ L +D +MPTGGGKS+CYQ+PAL KPG+ +VV
Sbjct: 13 SLESALKHYFGYDSFRPGQRQIIEKALQNQDLLVVMPTGGGKSLCYQLPALLKPGLTVVV 72
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L++ GI FL+S+ + +++ + LD ++L+Y+ PE
Sbjct: 73 SPLIALMQDQVQALQDNGIPATFLNSSLSGTELRERERAILDG---EMKLVYIAPERLLN 129
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
G +L S+ + +AIDEAHC+S WGHDFRP YR+LS LR + +VPI+ALTATA
Sbjct: 130 EG---RLAGWLSQVYVAAIAIDEAHCVSEWGHDFRPEYRQLSQLRQWFANVPIMALTATA 186
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D++E L LQ+P++ S+FNRPNL+YEVR K +Y +L +++ I+
Sbjct: 187 TERVRYDIIEQLNLQDPVLHVSTFNRPNLYYEVRPKH--KQSYRELLQLIRQQAGASGII 244
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L GIS YHAG++++ RS +I QV+VAT+AFGMGI+
Sbjct: 245 YCLSRKRVDELTTKLQRDGISALPYHAGMDNQLRSENQSRFIRDNVQVMVATIAFGMGIN 304
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P++ L++ M D + +EF++S+ N+
Sbjct: 305 KPDVRFVVHYDLPRNIEGYYQESGRAGRDGEPARCTLFFSMGDVKTVEFLISQKVDPNTG 364
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
E + + ++++Y E + CRR L FGE G
Sbjct: 365 --EPLEDEQRIATQQLRRVINYAEATECRRIIQLGYFGETFSG 405
>gi|301768981|ref|XP_002919891.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Ailuropoda
melanoleuca]
Length = 985
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 180/412 (43%), Positives = 251/412 (60%), Gaps = 13/412 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +V+SPLIAL+
Sbjct: 21 FGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVISPLIALI 80
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q K ++ DL+ KP +LLY+TPE+ A+ F L
Sbjct: 81 QDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYITPEMAASASFQPTLN 140
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 141 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCVALTATATPQVQEDV 200
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CA 261
+L L+ P+ K+ R NLFY+V++K+LL D Y +L LKA G C
Sbjct: 201 FAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLKALGQKADKGLLSGCG 260
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R C++L+ LS G+S AYHAGL R+ V ++W+ + V+VAT++FGMG
Sbjct: 261 IVYCRTREACEQLATELSHRGVSAKAYHAGLKAPERTLVQNEWMEEKVPVIVATISFGMG 320
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 321 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKL 380
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH 433
+ + S K ++ F +V +CEG GCR I + FG+ C H
Sbjct: 381 QEKRGNKA-SDKAAVLAFDALVTFCEGLGCRHAAIAKYFGDAPPACTKGCDH 431
>gi|17227701|ref|NP_484249.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
gi|17135183|dbj|BAB77729.1| ATP-dependent DNA helicase [Nostoc sp. PCC 7120]
Length = 718
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 177/402 (44%), Positives = 254/402 (63%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDNFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALMKQGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS QV+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNAYQVRSR-EEAILNGK--VRLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + +++ AIDEAHC+S WGHDFRP YR+L SLR P+VP+LALTATA
Sbjct: 124 RFLPFLDLVKEKVGISIFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPNVPVLALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA+L +++ N + I+Y
Sbjct: 184 DRVRADIIQQLGLKQPSIHLASFNRQNLYYEVRPKS--KQAYAELLELIRDN-EGSTIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L IS +YHAGL D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVEELTFKLQKDKISALSYHAGLPDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD S+ +++ D + +E+ + + Q
Sbjct: 301 PDVRLVVHFDIPRNLESYYQESGRAGRDGEASRCTIFFSFGDIKTIEWSIEQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ QM+DY EG+ CRR L FGE+ G
Sbjct: 361 IAKQQ---------LRQMIDYAEGTDCRRTIQLGYFGERFPG 393
>gi|25145561|ref|NP_502390.2| Protein HIM-6 [Caenorhabditis elegans]
gi|28201770|sp|O18017.2|BLM_CAEEL RecName: Full=Bloom syndrome protein homolog; AltName: Full=High
incidence of males protein 6; AltName: Full=RecQ
helicase homolog
gi|20853750|gb|AAM26298.1| RecQ helicase [Caenorhabditis elegans]
gi|22859109|emb|CAB05609.2| Protein HIM-6 [Caenorhabditis elegans]
Length = 988
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 186/405 (45%), Positives = 249/405 (61%), Gaps = 21/405 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +VVS
Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVS 294
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE GI E L++ + KIY +L SG PS++LLYVTPE ++A+
Sbjct: 295 PLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASG 354
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
S +H RGLL IDEAHC+S WGHDFRP Y KLSSLR P VPI+ALTAT
Sbjct: 355 RLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTAT 414
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---- 258
A PK+ D + L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 415 ATPKIVTDARDHLKMQNSKLFISSFVRDNLKY-----DLIPKAARSLINVVEKMKQLYPG 469
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R C+ + L+ G+S YHAGLND R SV WI+++ V+ AT+AF
Sbjct: 470 KSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAF 529
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 530 GMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGN 589
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ +T RS +++ Q+V YCE S CRRK ++E FGE
Sbjct: 590 T------TTGVRSMH--LNNVLQVVAYCENVSVCRRKMLVEHFGE 626
>gi|336317637|ref|ZP_08572488.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
gi|335877984|gb|EGM75932.1| ATP-dependent DNA helicase RecQ [Rheinheimera sp. A13L]
Length = 599
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 254/399 (63%), Gaps = 18/399 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ FG++QFR QL+ IQA LSG+D F LMPTGGGKS+CYQ+PAL P + +V
Sbjct: 3 QLLFDTLKQAFGYSQFRHGQLEVIQACLSGQDTFVLMPTGGGKSLCYQLPALMLPYVTVV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA EF++S+Q+ + + L + + L+LLY+ PE
Sbjct: 63 VSPLMSLMKDQVDALQANGIAAEFINSSQSREEIQDVIRRLRNQQ--LKLLYLAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
FMS+L ++ ++L AIDEAHCIS WGHDFRP Y +L+ L++Y P VP++ALTATA
Sbjct: 121 ADFMSRLAEVG----VSLFAIDEAHCISQWGHDFRPHYTELAQLKHYFPHVPMMALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P QKD+ L LQ P + SF+RPN+ Y V+ K + + LK I+
Sbjct: 177 DPATQKDISRQLNLQQPYISVGSFDRPNIRYTVQEKF---RPLEQVVNYLKLQEQQSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+ L+ G AAYHAGL ++ R+SV + + + Q+++ATVAFGMG++
Sbjct: 234 YCASRRKVDELTEQLAGKGFQVAAYHAGLTNEQRNSVQEAFKKDQIQLIIATVAFGMGVN 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ ++R V HF +P+++EA+YQE+GRAGRD +P+++L+ D RM + K+++ NS+
Sbjct: 294 KSNIRFVIHFELPRTIEAYYQETGRAGRDGVPAEALMLVDPADIARMRSWIEKDEN-NSR 352
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ +R F+QM + + CRR +L FGE
Sbjct: 353 TEVALQR--------FNQMAAFAQAQTCRRLVLLNYFGE 383
>gi|350417151|ref|XP_003491281.1| PREDICTED: Bloom syndrome protein homolog [Bombus impatiens]
Length = 1344
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 179/407 (43%), Positives = 245/407 (60%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 624 HSRE-MLKVFRQKFGLYSFRPNQLQAINAAILGFDCFVLMPTGGGKSLCYQLPALLLPGV 682
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +S T + IY +L +PSL+LLYVTPE
Sbjct: 683 TIVISPLKSLILDQVQKLTSLDIPAAHMSGGITDSQASGIYRELSKKEPSLKLLYVTPEK 742
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + L ++ RGLL IDEAHC+S WGHDFRP Y+KL+ LR P VP++AL
Sbjct: 743 ISASQKFCNLLTTLYERGLLARFVIDEAHCVSQWGHDFRPDYKKLNRLRENYPKVPVIAL 802
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L L P SSFNRPNL Y + + K+ D+ A L K
Sbjct: 803 TATATPRVRTDILHQLGLSVPKWFMSSFNRPNLRYSIIAKKGKNCSDEVIAMLKMKYK-- 860
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + + GI +YHAG D +R+ + WIS +VV AT+
Sbjct: 861 -NECGIVYCLSRKDCDDYAMQMRKNGIKALSYHAGHTDSSRTDIQGRWISEEIKVVCATI 919
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 920 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYADMHRIRKMIEL 979
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + +K I + +MV +CE + CRR + L FGE
Sbjct: 980 DNPNPT--------VTKTHIDNLYKMVSFCENKTDCRRAQQLHYFGE 1018
>gi|119510429|ref|ZP_01629563.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
gi|119464958|gb|EAW45861.1| ATP-dependent DNA helicase [Nodularia spumigena CCY9414]
Length = 721
Score = 342 bits (877), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 252/401 (62%), Gaps = 14/401 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+++FG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYNFGYDQFRPGQRQIIEDALENRDLLVVMPTGGGKSLCFQLPALIKSGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L+ I+ FL+S+ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVESLRNNNISATFLNSSLNPHKVRSREEAIRNGK--VRLLYVAPERLLSER 124
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L +H + ++ AIDEAHC+S WGHDFRP YR+L SLR PDVP +ALTATA
Sbjct: 125 FLPFLDLVHHQIGISTFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDVPTIALTATATD 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V+ D+++ L L+ P + +SFNR NL+YEVR K AYA++ +++ D I+YC
Sbjct: 185 RVRGDIIQQLGLKQPSIHLASFNRQNLYYEVRPKT--KSAYAEILELIRET-DGSTIIYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R DEL+ L + +YHAGL+D+ RS +I +V+VAT+AFGMGI++
Sbjct: 242 LTRKKVDELTFKLQNDKVVALSYHAGLSDEERSKNQTRFIRDDVRVIVATIAFGMGINKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVRLV HF++P+++E++YQESGRAGRD PS+ +++ D + +E+ +++ Q
Sbjct: 302 DVRLVVHFDLPRNLESYYQESGRAGRDSEPSRCTMFFSFSDIKTIEWSINQKADPQEQLI 361
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ Q++DY EG+ CRR L FGE+ G
Sbjct: 362 AKQQ---------LRQVIDYAEGTDCRRTIQLGYFGERFPG 393
>gi|300796980|ref|NP_001179255.1| ATP-dependent DNA helicase Q5 [Bos taurus]
gi|296476023|tpg|DAA18138.1| TPA: RecQ protein-like 5-like [Bos taurus]
Length = 987
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 259/426 (60%), Gaps = 12/426 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPERRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
D P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 251 SV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G C I+YC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGCGIIYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
DR ++ F++ K +K + + S K ++ F +V +CE SGCR I + FG+
Sbjct: 363 SRSDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAVLAFDALVAFCEESGCRHAAIAKYFGD 421
Query: 423 QVLGCV 428
C
Sbjct: 422 SPPACT 427
>gi|440680362|ref|YP_007155157.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
gi|428677481|gb|AFZ56247.1| ATP-dependent DNA helicase RecQ [Anabaena cylindrica PCC 7122]
Length = 724
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 253/402 (62%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 7 LEKKLKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS + +V+++ E + +GK +RLLYV PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNSYKVRSR-EEAIMNGK--VRLLYVAPERLVSD 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + ++ AIDEAHC+S WGHDFRP YR+L LR PDVP +ALTATA
Sbjct: 124 RFLPLLDVVKEKIGISTFAIDEAHCVSEWGHDFRPEYRQLKLLRKRYPDVPTIALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L L+ P + +SFNR NL+YEVR K AYA++ +++ N + I+Y
Sbjct: 184 DRVRADIIEQLGLKQPSIHIASFNRQNLYYEVRAKS--KRAYAEILEIVREN-EGSGIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L ++ YHAGL+D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQKDKVAALPYHAGLSDDERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H ++P+++E +YQESGRAGRD PS+ L++ D + +E+ +++ Q
Sbjct: 301 PDVRFVIHSDLPRNIEGYYQESGRAGRDDEPSRCTLFFSFADVKTIEWSINQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ Q++DY EG+ CRR L FGE+ G
Sbjct: 361 IAKQQ---------LRQVIDYAEGTDCRRTIQLGYFGERFAG 393
>gi|428201759|ref|YP_007080348.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
gi|427979191|gb|AFY76791.1| ATP-dependent DNA helicase RecQ [Pleurocapsa sp. PCC 7327]
Length = 708
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 254/402 (63%), Gaps = 16/402 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVSPLIA
Sbjct: 11 LKHFFGYEHFRPGQRKIVEEALQNRDLLVIMPTGGGKSLCFQLPALLKPGLTVVVSPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM+++V L++ GI FL+S+ T +V+++ LD GK ++LLYV PE + F +
Sbjct: 71 LMQDRVDALQDNGIGATFLNSSLTFPEVRSRETAILD-GK--IKLLYVAPERLLSERFRN 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L ++ + AIDEAHC+S WGHDFRP YR+L LR P VP+ ALTATA +VQ
Sbjct: 128 FLDLAATKISITAFAIDEAHCVSEWGHDFRPEYRQLIQLRQRYPHVPMFALTATATKRVQ 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+++ L L+ P + +SFNRPN++YEV+ K+ +Y L +++ + IVYCL R
Sbjct: 188 EDIIQQLGLRQPGIHLASFNRPNIYYEVQPKE--RRSYNQLLKLIRTQQGS-GIVYCLSR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE++ L GIS YHAG+ D+AR+ +I +V+VAT+AFGMGID+ DVR
Sbjct: 245 RNVDEIAFRLQKDGISTVPYHAGITDEARTLNQTRFIRDDVKVIVATIAFGMGIDKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++P+++E++YQESGRAGRD P+ L+ + D +R+E+I+ + Q + +
Sbjct: 305 FVIHYDLPRNLESYYQESGRAGRDGEPANCTLFLSLGDFKRIEYIIDQKSDPQEQRIARQ 364
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ Q+++Y EG+ CRR IL FGE+ G AS
Sbjct: 365 Q---------LRQVINYAEGTECRRTIILRYFGERFPGNCAS 397
>gi|380011350|ref|XP_003689771.1| PREDICTED: Bloom syndrome protein homolog [Apis florea]
Length = 1167
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 243/407 (59%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 469 HSREML-KIFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPGV 527
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +S T IY +L P+L+LLYVTPE
Sbjct: 528 TIVISPLKSLILDQVQKLTSLDIPATHMSGGITDSQALGIYRELSKKDPALKLLYVTPEK 587
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+P F + L +++R LL IDEAHC+S WGHDFRP Y+KL+ LR P VP++ L
Sbjct: 588 ISASPKFCNILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKKLNCLRENYPKVPVIVL 647
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + P SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 648 TATATPRVRSDILHQLRITTPKWFMSSFNRPNLRYSIIAKKSKNCSDEVIAMIKTKYK-- 705
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + ++ I +YHAGL D RS + WIS +VV AT+
Sbjct: 706 -NDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWISEEIKVVCATI 764
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 765 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYTDMHRIRKMIEL 824
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ S + K I + +MV +CE + CRR + L FGE
Sbjct: 825 DNSNPT--------IIKTHIDNLFKMVSFCENKTDCRRTQQLNYFGE 863
>gi|66802111|ref|XP_629849.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
gi|60463228|gb|EAL61421.1| ATP-dependent DNA helicase RecQ family protein [Dictyostelium
discoideum AX4]
Length = 1259
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 182/423 (43%), Positives = 260/423 (61%), Gaps = 15/423 (3%)
Query: 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70
S+ + N P +K ++ + R FG FR+ Q + I + L G D F LMPTGGGKS+CY
Sbjct: 501 NSRFKGNFPWSQK--IIDINRSMFGFHVFRENQREIINSTLEGNDTFVLMPTGGGKSLCY 558
Query: 71 QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130
QIPAL + G+ +V+SPLI+L+ +QV L+ G LSS + +Y+D+ S P
Sbjct: 559 QIPALYQKGLTIVISPLISLINDQVEFLETLGYPAAALSSAVSSDAAIDVYKDIRSNSPK 618
Query: 131 LRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
+RLLY+TPE + + + L + +GL + + IDEAHC+S WGHDFRP Y++LS LR
Sbjct: 619 IRLLYLTPERVVKSDSLIEILANLDQKGLFSRIVIDEAHCVSQWGHDFRPDYKELSILRR 678
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 247
P VPILALTATA +V+ DV+ +L ++NP+ K SFNRPNL Y+V + K ++DD
Sbjct: 679 KFPKVPILALTATATERVRNDVIYNLSMRNPVCFKQSFNRPNLIYQVLKKTKQVVDDMSK 738
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
+ S D IVYC+ + C+ ++ L IS A YHAGL + R+ V +W
Sbjct: 739 FIHSTYP---DKSGIVYCISKYDCENVAKRLRELKISAAHYHAGLENDERAKVQANWQKG 795
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
R +V+VAT+AFGMGI++ DVR V H ++PKS+E +YQESGRAGRD S LLY+ D+
Sbjct: 796 RIKVIVATIAFGMGINKADVRFVIHHSVPKSLEGYYQESGRAGRDGGISHCLLYFSWADK 855
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVL- 425
R + ++ +N + Q S R ++ S+ ++MV+YCE + CRR+ L FGE
Sbjct: 856 LRNDLLI-QNSFTSGQGSSHNTRETRDSL---NKMVNYCENETDCRRQLQLAYFGENFEK 911
Query: 426 -GC 427
GC
Sbjct: 912 SGC 914
>gi|440895196|gb|ELR47457.1| ATP-dependent DNA helicase Q5 [Bos grunniens mutus]
Length = 987
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 258/426 (60%), Gaps = 12/426 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPDRRVRSTLKKVFGFDSFKTPLQEKAIMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
D P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 251 SV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G C IVYC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKAPERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
DR ++ F++ K +K + + S K ++ F +V +CE SGCR I + FG+
Sbjct: 363 SRSDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAVLAFDALVAFCEESGCRHAAIAKYFGD 421
Query: 423 QVLGCV 428
C
Sbjct: 422 SPPACT 427
>gi|308452165|ref|XP_003088938.1| hypothetical protein CRE_17749 [Caenorhabditis remanei]
gi|308244257|gb|EFO88209.1| hypothetical protein CRE_17749 [Caenorhabditis remanei]
Length = 1020
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 183/407 (44%), Positives = 251/407 (61%), Gaps = 21/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +V
Sbjct: 267 EELYSTLKSKFGFNQFRHRQKQCILSTLMGNDTFVLMPTGAGKSLCYQLPAVILPGVTVV 326
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
VSPL +L+E+Q + +KE GI E L++ + + IY DL S P+++LLYVTPE ++A
Sbjct: 327 VSPLRSLIEDQKMKMKELGIGCEALTADLSAGAQEDIYSDLTSENPTIKLLYVTPEKISA 386
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALT 200
+ +S +H RGLL IDEAHC+S WGHDFRP Y KLS+LR + P VPI+ALT
Sbjct: 387 SGRLISVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSTLREKFHNPPVPIIALT 446
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-- 258
ATA PK+ D +L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 447 ATATPKIVTDARYNLKMQNSKLFISSFVRDNLKY-----DLIPKAAKSLINVVEKMKQLY 501
Query: 259 --TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C+ + L+ G+S YHAGLND R SV W++++ V+ AT+
Sbjct: 502 PGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDGLRVSVQKGWLANKFDVICATI 561
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 562 AFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE 621
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ +T RS +++ Q+V YCE S CRRK ++E FGE
Sbjct: 622 GNT------TTGVRSMH--LNNVLQVVAYCENVSVCRRKMLVEHFGE 660
>gi|345495259|ref|XP_001605753.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1426
Score = 341 bits (875), Expect = 4e-91, Method: Compositional matrix adjust.
Identities = 174/404 (43%), Positives = 244/404 (60%), Gaps = 10/404 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++ + R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 662 HSRE-MMNVFRQKFGLYSFRPNQLQAINAAICGYDCFILMPTGGGKSLCYQLPALLTPGV 720
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+VVSPL +L+ +QV L I+ LSS+ T + +Y +L +PSL+LLY+TPE
Sbjct: 721 TIVVSPLKSLIIDQVQKLISLDISAAHLSSSVTDEQAQSVYRELAKKEPSLKLLYLTPEK 780
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ L+ ++ RG+L IDEAHC+S WGHDFRP Y+KL LR P VP +AL
Sbjct: 781 ISASQKIGDALRALYERGMLARFVIDEAHCVSQWGHDFRPDYKKLQLLRKNYPKVPTMAL 840
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+ D++ L + NP SSFNRPNL Y V K + + + + +
Sbjct: 841 TATATPRVRTDILHQLGMTNPKWFMSSFNRPNLHYVVTSKKGKNSTEEIIEMIKRDFRND 900
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C IVYCL R CD + + + GI +YHAGL+D R + WIS + +VV AT+AFG
Sbjct: 901 CGIVYCLSRKDCDSFADTMKSNGIKALSYHAGLSDHQRLEIQGRWISEQIKVVCATIAFG 960
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ +VR V H +PKS+E +YQESGRAGRD ++ +L+Y D R ++ + +
Sbjct: 961 MGIDKPNVRFVIHATLPKSIEGYYQESGRAGRDGENAECILFYHYGDMMRHRKMIEGDST 1020
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N + + K + + ++V +CE + CRR L FGE
Sbjct: 1021 SNWE-------AQKTHMDNLFKIVAFCENKTDCRRGLQLNYFGE 1057
>gi|261289349|ref|XP_002603118.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
gi|229288434|gb|EEN59129.1| hypothetical protein BRAFLDRAFT_198907 [Branchiostoma floridae]
Length = 666
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 173/391 (44%), Positives = 240/391 (61%), Gaps = 10/391 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +FR QL+A A L G+DCF LMPTGGGKS+CYQ+PA+ G+ +V+SPL +L+++
Sbjct: 20 FGLHRFRTNQLEACNAALLGKDCFILMPTGGGKSLCYQLPAIVSGGVTIVISPLKSLIQD 79
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV L + LS + QV + +Y DL P +LLYVTPE ++++ +S LK
Sbjct: 80 QVSKLNGLEVPAAHLSGELSQQVASGVYMDLARRTPQTKLLYVTPEKVSSSEKLLSTLKS 139
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ RGLL+ IDEAHC+S WGHDFRP Y+KL LR P VP++ALTATA P+V++D++
Sbjct: 140 LYQRGLLDRFVIDEAHCVSQWGHDFRPDYKKLCVLRKSFPGVPMMALTATATPRVRRDIL 199
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272
L + +P SFNR NL Y V K + L + IVYCL R C+
Sbjct: 200 HQLGMTDPRWFVQSFNRTNLHYSVMPKKVKSATKEVLELINSRFRSKTGIVYCLSRKECE 259
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+S L G S AYHAG++DK R+ + D W K V+ AT+AFGMGID+ DVR V H
Sbjct: 260 TVSDELCRNGTSACAYHAGMSDKERARIQDLWPEHYK-VICATIAFGMGIDKPDVRFVIH 318
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
+++PKS+E +YQESGRAGRD S +L+Y D+ RM+ ++ ++ + S
Sbjct: 319 YSLPKSVEGYYQESGRAGRDGEASDCILFYNYHDKMRMQKLIHMDKEATYE-------SR 371
Query: 393 KKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
K + + +MV YCE S CRR ++L FGE
Sbjct: 372 KVHMDNLLRMVQYCENESDCRRAQLLHYFGE 402
>gi|440799208|gb|ELR20268.1| ATPdependent DNA helicase, RecQ subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 608
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 246/403 (61%), Gaps = 31/403 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ ++L+ FGH QFR Q + + ++LSG+D F LMPTG GKS+C+Q+PAL GI +VVS
Sbjct: 1 MEEILQNTFGHPQFRPSQREVMVSILSGQDTFVLMPTGAGKSLCFQLPALVLDGITVVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI GI+ L S+Q + I D+ S +P +LLYVTPEL T G
Sbjct: 61 PLI-------------GISAALLCSSQKKDERDLIQRDITSKQPKTKLLYVTPELIDTQG 107
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F++ L + + L + +DEAH IS WGHDFR +YRKLS + PI
Sbjct: 108 FLNTLYSLRNNNKLAMFVVDEAHAISEWGHDFRFAYRKLSVFKERFNSTPIT-------- 159
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ DV+ SL L PL++ SFNRPN++YEVR+KDLL + + D+ S + C I+YC
Sbjct: 160 RVQTDVVNSLRLDKPLIITLSFNRPNIYYEVRFKDLLGNVHNDIASFISNRAGACGIIYC 219
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+R TC +++ L G++ AYHAGL D R++V W++ ++VAT+AFGMGID+
Sbjct: 220 HKRETCGHVASKLKERGVNAEAYHAGLRDADRTAVQTKWMTGEVDIIVATIAFGMGIDKP 279
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK--NQSKNSQ 383
DVR V HF++PK++E FYQ G++ S SLLYY DD+ F+L++ + + Q
Sbjct: 280 DVRFVIHFDVPKNLEGFYQAHGKS------SVSLLYYSKDDKSLNSFLLAQAAQKQRERQ 333
Query: 384 SFSTRERSSKKSISD-FSQMVDYCEGS-GCRRKKILESFGEQV 424
T + + +I++ + +MV+YCEG GC+RK++LE FGE
Sbjct: 334 GQQTGPQPRQNAINNSWEKMVEYCEGKPGCKRKRLLEYFGENT 376
>gi|23503567|dbj|BAC20378.1| RECQL5 protein [Gallus gallus]
Length = 446
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 246/406 (60%), Gaps = 12/406 (2%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 29 FGFESFKTSLQESATMAVVRGEKDVFVCMPTGAGKSLCYQLPAVLAVGITIVISPLIALI 88
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++Q L I L+S + Q K I DL S KP ++LLY+TPE+ A F L
Sbjct: 89 QDQGTHLLALKIKACSLNSKLSAQEKKTILADLASEKPQIKLLYITPEMAAASSFQPTLN 148
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + IDEAHC+S WGHDFRP Y +L +LR +P+ P +ALTATA + Q D+
Sbjct: 149 SLVSRNLLSYLIIDEAHCVSQWGHDFRPDYLRLGTLRTRIPNTPCVALTATATKQDQDDI 208
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLC-SVLKANGDT-----CA 261
+ +L L+ PL K+ R NLFY+V++K+LL D YA D C L+ T C
Sbjct: 209 VTALKLKQPLATFKTPCFRSNLFYDVQFKELLTDPYAHLKDFCLKALEVKNTTGVYSGCG 268
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R+SV ++W+ + V+VAT++FGMG
Sbjct: 269 IVYCRMRDVCDQLAIELSYRGVKAKAYHAGLKAADRTSVQNEWMEEKIPVIVATISFGMG 328
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD P LYY +DR ++ F++ K SK
Sbjct: 329 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPPCCRLYYSRNDRDQVSFLIKKELSKI 388
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ T + S K ++ F +V +CE GCR I + FG+ C
Sbjct: 389 QEKKGTLKESDKSVMTAFDAIVSFCEELGCRHAAIAKYFGDVTPPC 434
>gi|341891934|gb|EGT47869.1| hypothetical protein CAEBREN_30811 [Caenorhabditis brenneri]
Length = 978
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 182/407 (44%), Positives = 249/407 (61%), Gaps = 21/407 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +V
Sbjct: 224 EELYSTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVV 283
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL +L+E+Q + +KE GI E L++ T +IY DL S P+++LLYVTPE +
Sbjct: 284 VSPLRSLIEDQKMKMKELGIGCEALTADLTASAHEEIYSDLSSENPTIKLLYVTPEKISA 343
Query: 144 PGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALT 200
G +S + +H RGLL IDEAHC+S WGHDFRP Y KL++LR P VPI+ALT
Sbjct: 344 SGRLSSVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLNTLREKYNNPPVPIIALT 403
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-- 258
ATA PK+ D + L +Q+ + SSF R NL Y DL+ A L +V++
Sbjct: 404 ATATPKIVTDARDHLKMQDSKLFISSFVRDNLKY-----DLIPKAAKSLVNVVEKMKQLY 458
Query: 259 --TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C+ + L+ G+S YHAGLND R SV W++++ V+ AT+
Sbjct: 459 PGKSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQKSWLANKFDVICATI 518
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 519 AFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEE 578
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ +T RS +++ Q+V YCE S CRRK ++E FGE
Sbjct: 579 GNT------TTGVRSMH--LNNVLQVVAYCENVSVCRRKMLVEHFGE 617
>gi|428320783|ref|YP_007118665.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
gi|428244463|gb|AFZ10249.1| ATP-dependent DNA helicase RecQ [Oscillatoria nigro-viridis PCC
7112]
Length = 731
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 255/402 (63%), Gaps = 14/402 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ FG+ FR Q + ++A L RD +MPTGGGKS+C+Q+PAL KPG+ +VV
Sbjct: 14 SLEQALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVV 73
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ GI FL+ST + Q + GK ++LLYV PE
Sbjct: 74 SPLIALMQDQVEALQDNGIGATFLNSTLSTQETRSRETAILEGK--IKLLYVAPERLLGE 131
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + ++ ++ AIDEAHC+S WGHDFRP YR++ +R+ PD+PI+ALTATA
Sbjct: 132 RFLPFLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMALTATAT 191
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V++D+++ L L+NP + +SFNRPNL+YEVR K ++A++ +++ G + I+Y
Sbjct: 192 ERVRQDIIQQLTLRNPYIHVASFNRPNLYYEVRPK--TKHSFAEVLQIIQKKGGS-GIIY 248
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +E++ L GI+ YHAG+ND R++ +I QV+VAT+AFGMGI++
Sbjct: 249 CLSRKKVEEVAYKLQQSGIAALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINK 308
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++PK++E +YQESGRAGRD P+ L++G D + +++I+ + Q
Sbjct: 309 PDVRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYGDVKMIDYIIEQKPDPQEQR 368
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ ++++Y E + CRR L FG+ G
Sbjct: 369 IARQQ---------LRRVINYAESTDCRRTIQLSYFGDSFPG 401
>gi|307152715|ref|YP_003888099.1| RecQ family ATP-dependent DNA helicase [Cyanothece sp. PCC 7822]
gi|306982943|gb|ADN14824.1| ATP-dependent DNA helicase, RecQ family [Cyanothece sp. PCC 7822]
Length = 717
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 254/408 (62%), Gaps = 16/408 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++ +L L+ +FG+ FR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 10 MYQLNSLETALKQYFGYDNFRPGQRQIIEEALQNRDLLVIMPTGGGKSLCFQLPALLKPG 69
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLI+LM++QV L + GI FL+S+ + +++++ ++ K ++LLYV P
Sbjct: 70 LTVVVSPLISLMQDQVDALLDNGIGATFLNSSLGLSEIRSR---EMAILKNKIKLLYVAP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + F L KI ++ AIDEAHC+S WGHDFRP YR+L LR P VP+
Sbjct: 127 ERLLSEKFTPFLDKIALDVGISAFAIDEAHCVSEWGHDFRPEYRQLRQLRQRYPSVPMFG 186
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +VQ+D++ L L+NP V +SFNRPNL+Y+VR K +Y L ++
Sbjct: 187 LTATATKRVQEDIIVQLGLKNPGVHIASFNRPNLYYDVRPKQ--QRSYDQLLKYIRTQKG 244
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYCL R DE++ L GIS YHAG+ D+AR+ +I QV+VAT+AF
Sbjct: 245 S-GIVYCLSRRNVDEIAFRLQKDGISALPYHAGMTDEARTLNQTRFIRDDAQVMVATIAF 303
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V HF++P+++E++YQESGRAGRD P+K ++ G D +++E+I+ Q
Sbjct: 304 GMGINKLDVRFVVHFDLPRNLESYYQESGRAGRDGEPAKCTIFLGFGDLKKIEYIIE--Q 361
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
N Q K + Q+++Y EG+ CRR +L FGE+ G
Sbjct: 362 KSNPQ-------EKKIAQQQLRQVINYAEGTECRRTIVLRYFGERFQG 402
>gi|334121014|ref|ZP_08495090.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
gi|333455733|gb|EGK84376.1| ATP-dependent DNA helicase RecQ [Microcoleus vaginatus FGP-2]
Length = 731
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 252/401 (62%), Gaps = 14/401 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG+ FR Q + ++A L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 15 LEQALKHFFGYDSFRPGQQEIVEAALQKRDMMIVMPTGGGKSLCFQLPALLKPGLTVVVS 74
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L++ GI FL+ST + Q + GK ++LLYV PE
Sbjct: 75 PLIALMQDQVEALQDNGIGATFLNSTLSSQETRSRETAILEGK--IKLLYVAPERLLGER 132
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L + ++ ++ AIDEAHC+S WGHDFRP YR++ +R+ PD+PI+ LTATA
Sbjct: 133 FLPFLDIVANKLGISAFAIDEAHCVSEWGHDFRPEYRQMQRVRDRYPDIPIMGLTATATE 192
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V++D+++ L L+NP + +SFNRPNL+YEVR K ++A++ ++K G + I+YC
Sbjct: 193 RVRQDIIQQLTLRNPYIHVASFNRPNLYYEVRPK--TKHSFAEVLQIIKKKGGS-GIIYC 249
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R DE++ L GI YHAG+ND R++ +I QV+VAT+AFGMGI++
Sbjct: 250 LSRKKVDEVAYKLQQSGIQALPYHAGMNDVDRATNQTRFIRDDVQVMVATIAFGMGINKP 309
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++PK++E +YQESGRAGRD P+ L++G D + +++I+ + Q
Sbjct: 310 DVRFVIHYDLPKNLEGYYQESGRAGRDNEPAHCSLFFGYGDVKMIDYIIEQKPDPQEQRI 369
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ ++++Y E + CRR L FG+ G
Sbjct: 370 ARQQ---------LRRVINYAESTDCRRTIQLSYFGDSFPG 401
>gi|297487976|ref|XP_002696629.1| PREDICTED: Bloom syndrome protein [Bos taurus]
gi|296475516|tpg|DAA17631.1| TPA: Bloom syndrome, RecQ helicase-like [Bos taurus]
Length = 1430
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 243/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 664 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 722
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 723 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 782
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 783 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 842
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 843 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 902
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 903 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 962
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 963 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEK 1022
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1023 DGNRHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1061
>gi|218245896|ref|YP_002371267.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
gi|218166374|gb|ACK65111.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8801]
Length = 709
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 259/408 (63%), Gaps = 16/408 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ + +L + L++ FG+ FR Q IQ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 1 MFQSNSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV L + GI FL SS ++ +V+++ + + GK ++LLYV P
Sbjct: 61 LTVVVSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSR-EQAIIKGK--IKLLYVAP 117
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F L + + ++ AIDEAHC+S WGHDFRP YR+L LR P VP+LA
Sbjct: 118 ERLLNDKFTPFLDFLAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D++ L L+ P + +SFNRPNL Y+V++K+ +Y L S ++
Sbjct: 178 LTATATKRVREDIIHQLALKQPGIHITSFNRPNLDYDVQFKE--RRSYNKLLSYIRQQKG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYCL R + D+++ L GI YHAG+ D+AR+ + +I QV+VAT+AF
Sbjct: 236 S-GIVYCLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V H+++P+++E +YQESGRAGRD P++ L++ + D +++E+++ +
Sbjct: 295 GMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKS 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q+VDY EG+ CRR +L FGE+ G
Sbjct: 355 TPQEQKIARQQ---------LRQVVDYAEGTECRRTIVLRYFGERFAG 393
>gi|428213965|ref|YP_007087109.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
gi|428002346|gb|AFY83189.1| ATP-dependent DNA helicase RecQ [Oscillatoria acuminata PCC 6304]
Length = 836
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 169/410 (41%), Positives = 257/410 (62%), Gaps = 16/410 (3%)
Query: 19 PLHEK--EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
PLH L + L+ FGH FR Q + ++A L RD +MPTGGGKS+C+Q+PAL
Sbjct: 6 PLHATAPNQLERSLKHFFGHDSFRPGQREIVEAALQNRDLLIVMPTGGGKSLCFQLPALL 65
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ GI +VVSPLIALM++QV LK GIA FL+ST + + + G+ ++LLYV
Sbjct: 66 RKGITVVVSPLIALMQDQVESLKNNGIACTFLNSTLSWEESRSRETAILQGE--IKLLYV 123
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE + F+ + + ++ ++ AIDEAHC+S WGHDFRP YR++ LR P++P+
Sbjct: 124 APERLLSERFLPFMDLVRAQVGISGFAIDEAHCVSEWGHDFRPEYRQMQLLRQRYPEIPM 183
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA +V++D+ + L L++P + +SFNRPNL+YEVR K+ +Y +L +++ +
Sbjct: 184 MALTATATDRVRQDITQQLALRDPKIHIASFNRPNLYYEVRQKN--KQSYRELVKLIRES 241
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YCL R DE++ L GI YHAG+ND+ RSS +I QV+VAT+
Sbjct: 242 KGS-GIIYCLSRRRVDEVAYKLQREGIDAIPYHAGMNDQERSSNQTRFIRDDAQVIVATI 300
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ DVR V H+++P+++E +YQESGRAGRD P+ +++G D + +E+I+ +
Sbjct: 301 AFGMGINKPDVRFVVHYDLPRNIEGYYQESGRAGRDGEPANCTMFFGYGDIKTIEYIIDQ 360
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q+++Y E + CRR L FGE+ G
Sbjct: 361 KTDVDEQRIARQQ---------LRQIINYSESTVCRRTIQLGYFGERFPG 401
>gi|119913638|ref|XP_613809.3| PREDICTED: Bloom syndrome protein [Bos taurus]
Length = 1430
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 243/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 664 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 722
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 723 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 782
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 783 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 842
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 843 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 902
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 903 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 962
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 963 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEK 1022
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1023 DGNRHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1061
>gi|440913178|gb|ELR62661.1| Bloom syndrome protein [Bos grunniens mutus]
Length = 1430
Score = 340 bits (872), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 243/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 664 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 722
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 723 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 782
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 783 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRPDYKRMNILRQKFPSVPVMAL 842
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 843 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 902
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 903 SGIIYCLSRRECDTMAETLQNDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 962
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 963 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCILFYTYHDVTRLKRLILMEK 1022
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1023 DGNRHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1061
>gi|313677434|ref|YP_004055430.1| ATP-dependent DNA helicase recQ [Marivirga tractuosa DSM 4126]
gi|312944132|gb|ADR23322.1| ATP-dependent DNA helicase RecQ [Marivirga tractuosa DSM 4126]
Length = 725
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/405 (42%), Positives = 253/405 (62%), Gaps = 20/405 (4%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
+ E+EA +K L+ FG+ QFR Q +Q +++G++ F +MPTG GKS+CYQ+PA+++
Sbjct: 2 IEEQEATLKEKLKEVFGYNQFRGNQELIMQNLINGKNTFVIMPTGAGKSLCYQLPAISRE 61
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G LVVSPLIALM+NQV L G+ FL+ST T ++ +++ SG +L+LLYV P
Sbjct: 62 GTALVVSPLIALMKNQVDTLVALGVNAAFLNSTLTKTETKRVKKEVMSG--NLKLLYVAP 119
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK+ + ++ AIDEAHCIS WGHDFRP YR++ S+ + ++PI+A
Sbjct: 120 ESLTKEENVEFLKQAN----ISFAAIDEAHCISEWGHDFRPEYRRIKSILQQISNIPIIA 175
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L ++ V KSSFNR NL+YEVR K+ A L L
Sbjct: 176 LTATATPKVQLDIQKNLNMEEANVFKSSFNRENLYYEVRPKN---QAKKQLIRFLNERKG 232
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C ++YCL R +E++ +L+ G + A YHAGL R DD+++ ++VAT+AF
Sbjct: 233 KCGVIYCLSRKKVEEIAEFLNVNGFNAAPYHAGLEGATRMKNQDDFLNEDVDIIVATIAF 292
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++ PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 293 GMGIDKPDVRFVIHYDTPKSVEGYYQETGRAGRDGLVGDCLMFYSYNDILKLE------- 345
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K ++ E+ + K + +M Y E S CRRK++L FGE+
Sbjct: 346 -KFNKDKPVTEKENAKLL--LEEMSSYAESSVCRRKQLLHYFGEE 387
>gi|221044892|dbj|BAH14123.1| unnamed protein product [Homo sapiens]
Length = 1018
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGCRHAAIAKYFGDALPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|18485510|ref|NP_569721.1| ATP-dependent DNA helicase Q5 [Mus musculus]
gi|17511226|dbj|BAB79232.1| RecQ helicase protein-like 5 beta [Mus musculus]
gi|148702584|gb|EDL34531.1| RecQ protein-like 5, isoform CRA_b [Mus musculus]
gi|162317946|gb|AAI56759.1| RecQ protein-like 5 [synthetic construct]
Length = 982
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 188/458 (41%), Positives = 272/458 (59%), Gaps = 28/458 (6%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVKGAEDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 ASGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLVSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLK 248
Query: 255 A------NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A NG + C IVYC R C++L+ LS+ G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKAENGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASDRTQVQNEWME 308
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 309 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 368
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
R ++ F++ K +K + + S K ++ F +V +CE GCR I + FG+
Sbjct: 369 RDQVSFLIRKELAKLQEKRGNKP-SDKATLLAFDALVTFCEEVGCRHAAIAKYFGDAPPA 427
Query: 427 CV---------ASVTHRVVSFISPFILLISSSKTDTCI 455
C A++T ++ + L SSS + TCI
Sbjct: 428 CAKGCDYCQNPAAITKKLDA------LERSSSWSKTCI 459
>gi|254413079|ref|ZP_05026851.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
gi|196180243|gb|EDX75235.1| ATP-dependent DNA helicase RecQ [Coleofasciculus chthonoplastes PCC
7420]
Length = 731
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/407 (41%), Positives = 256/407 (62%), Gaps = 14/407 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++ ++L L+ FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 23 MYQLQSLGDALKQFFGYTTFRPGQQQIVEEALQNRDLLIIMPTGGGKSLCFQLPALLKPG 82
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +VVSPLIALM++QV L + GI FL+ST + + +GK ++LLYV PE
Sbjct: 83 LTVVVSPLIALMQDQVDALVDNGIGATFLNSTLSWDAVRSREMAILNGK--IKLLYVAPE 140
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F L+++ S+ ++ A+DEAHC+S+WGHDFRP YR++ LR PD+PILAL
Sbjct: 141 RLLAERFAPFLEQVRSQVGISAFAVDEAHCVSAWGHDFRPEYRQIKQLRQRYPDIPILAL 200
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +VQ+D+++ L L+ P + +SFNRPNL+YE++ K +Y L ++++ +
Sbjct: 201 TATATKRVQQDIVQQLTLRQPSIHIASFNRPNLYYEIQPKQ--RQSYNQLFKKVQSHKGS 258
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + DE++ L GIS YHAG++D RSS + +I QV+VAT+AFG
Sbjct: 259 -GIIYCLSRRSVDEVAFRLQKDGISALPYHAGMSDIDRSSNQNRFIRDDVQVIVATIAFG 317
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E +YQESGRAGRD P+ ++Y D R+++++ +
Sbjct: 318 MGINKLDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAYCTIFYRPGDVPRLDYLIDQKPD 377
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q + ++ Q+ DY EG+ CRR +L FGE+ G
Sbjct: 378 PREQRVARQQ---------LQQIRDYAEGTDCRRTILLRYFGERFKG 415
>gi|148342513|gb|ABQ59039.1| RECQL5 protein [Homo sapiens]
Length = 991
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGCRHAAIAKYFGDALPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|148612816|ref|NP_004250.4| ATP-dependent DNA helicase Q5 isoform 1 [Homo sapiens]
gi|22654276|sp|O94762.2|RECQ5_HUMAN RecName: Full=ATP-dependent DNA helicase Q5; AltName: Full=DNA
helicase, RecQ-like type 5; Short=RecQ5; AltName:
Full=RecQ protein-like 5
gi|7959113|dbj|BAA95953.1| DNA helicase recQ5 beta [Homo sapiens]
gi|119609695|gb|EAW89289.1| RecQ protein-like 5, isoform CRA_a [Homo sapiens]
gi|119609697|gb|EAW89291.1| RecQ protein-like 5, isoform CRA_a [Homo sapiens]
Length = 991
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGCRHAAIAKYFGDALPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|257058944|ref|YP_003136832.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
gi|256589110|gb|ACU99996.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. PCC 8802]
Length = 709
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 259/408 (63%), Gaps = 16/408 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ + +L + L++ FG+ FR Q IQ L RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 1 MFQSNSLEQSLKYFFGYDSFRPGQAKIIQEALQNRDLLVIMPTGGGKSLCFQLPALLKPG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV L + GI FL SS ++ +V+++ + + GK ++LLYV P
Sbjct: 61 LTVVVSPLIALMQDQVDTLLDNGIGATFLNSSLKSEEVRSR-EQAIIKGK--IKLLYVAP 117
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F L I + ++ AIDEAHC+S WGHDFRP YR+L LR P VP+LA
Sbjct: 118 ERLLNDKFTPFLDFIAEKIGVSFFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPQVPMLA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D++ L L+ P + +SFNRPNL Y+V++K+ +Y L S ++
Sbjct: 178 LTATATKRVREDIIHQLELKQPGIHITSFNRPNLDYDVQFKE--RRSYNKLLSYIRQQKG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVYCL R + D+++ L GI YHAG+ D+AR+ + +I QV+VAT+AF
Sbjct: 236 S-GIVYCLSRRSVDDIAFRLQNDGIKALPYHAGMADEARALNQNRFIRDDVQVMVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V H+++P+++E +YQESGRAGRD P++ L++ + D +++E+++ +
Sbjct: 295 GMGINKPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPAECTLFFSLSDLKKIEYLIDQKS 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q+VDY EG+ CRR +L FGE+ G
Sbjct: 355 TPQEQKIARQQ---------LRQVVDYAEGTECRRTIVLRYFGERFAG 393
>gi|410981698|ref|XP_003997203.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Felis catus]
Length = 987
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 251/412 (60%), Gaps = 13/412 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PA+ GI +V+SPLIAL+
Sbjct: 21 FGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQLPAVLAKGITIVISPLIALI 80
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q K ++ DL+ KP +LLY+TPE+ A+ F L
Sbjct: 81 QDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEQEKPQTKLLYITPEMAASASFQPTLN 140
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 141 SLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPCVALTATATPQVQEDV 200
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CA 261
+L L+ P+ K+ R NLFY+V++K+LL D Y +L LKA G C
Sbjct: 201 FAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLKDFCLKALGQKTAKGSLSGCG 260
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++FGMG
Sbjct: 261 IVYCRTREACEQLATELSYRGVNAKAYHAGLKPSERTLVQNDWMEEKVPVIVATISFGMG 320
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 321 VDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKL 380
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH 433
+ ++ S K ++ F +V +CE GCR I + FG+ C H
Sbjct: 381 QEKRGSKA-SDKAAVLAFDALVAFCEELGCRHAAIAKYFGDAPPACTKGCDH 431
>gi|380790165|gb|AFE66958.1| ATP-dependent DNA helicase Q5 isoform 1 [Macaca mulatta]
gi|383412321|gb|AFH29374.1| ATP-dependent DNA helicase Q5 isoform 1 [Macaca mulatta]
Length = 991
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQENATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|322801995|gb|EFZ22532.1| hypothetical protein SINV_04660 [Solenopsis invicta]
Length = 1148
Score = 340 bits (871), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 180/407 (44%), Positives = 245/407 (60%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L ++ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 504 HSREML-QIFRQRFGLYTFRPNQLQAINATLLGFDCFILMPTGGGKSLCYQLPALLSIGL 562
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+VVSPL +L+ +QV L I LS + T IY +L +P+L++LYVTPE
Sbjct: 563 TVVVSPLKSLISDQVQKLISLDIPAAHLSGSITENQAEAIYRELSKKEPALKILYVTPEK 622
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+P S L ++ R LL IDE HC+S WGHDFRP Y++L LR+ P VP +AL
Sbjct: 623 ISASPKLCSTLTNLYERELLARFVIDEVHCVSQWGHDFRPDYKRLRCLRDNYPKVPTMAL 682
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + NP SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 683 TATATPRVRTDILHQLGMTNPKWFMSSFNRPNLRYSIIAKKGKNCSDEIVAMIMTKFK-- 740
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ +A + GI +YHAGL+D RS+ WIS +V+ AT+
Sbjct: 741 -NACGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLSDVQRSNCQGKWISDEIRVICATI 799
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ +L
Sbjct: 800 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGETADCILFYNYSDMHRIRKMLEL 859
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ + + Q +T + + +MV +CE S CRR L FGE
Sbjct: 860 D-NPSPQVINTH-------MDNLFKMVAFCENSTDCRRSLQLNYFGE 898
>gi|428307721|ref|YP_007144546.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
gi|428249256|gb|AFZ15036.1| ATP-dependent DNA helicase RecQ [Crinalium epipsammum PCC 9333]
Length = 728
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 251/403 (62%), Gaps = 16/403 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ +FG+ FR Q ++ L RD LMPTGGGKS+C+Q+PAL KPG+ +VV
Sbjct: 6 SLEQALKHYFGYDNFRPGQRQIVEEALEKRDLLILMPTGGGKSLCFQLPALLKPGLTVVV 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLI+LM++QV L + GI FL+ST V+++ L+ GK +++LYV PE T
Sbjct: 66 SPLISLMQDQVEALLDNGIGATFLNSTVDWADVRSREVGILN-GK--IKILYVAPERLLT 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F L+++ + ++ AIDEAHC+S WGHDFRP YR+L LR DVPI ALTATA
Sbjct: 123 DKFTLFLEQVQRQVGISAFAIDEAHCVSQWGHDFRPEYRQLKQLRQRYRDVPIFALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L+ P + SSFNRPNL+YEV+ K AY L +++ + IV
Sbjct: 183 TNRVREDIIQQLALRQPSIHISSFNRPNLYYEVQLKQ--KQAYLQLLKLIR-QYEGSGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DE++ L GIS YHAG+ D+ R+ +I QV+VAT+AFGMGI+
Sbjct: 240 YCLSRRHVDEVAFRLQKDGISALPYHAGMTDEERAYNQTRFIRDDVQVMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P++ L +G D R + +++ + Q
Sbjct: 300 KPDVRFVIHYDLPRNLEGYYQESGRAGRDGEPARCTLLFGTGDLRTINYLIEQKSDAQEQ 359
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ +M+DY EG+ CRRK L FGE+ G
Sbjct: 360 RVARQQ---------LQKMIDYAEGTDCRRKIQLSYFGERFAG 393
>gi|441498157|ref|ZP_20980358.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441438064|gb|ELR71407.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 728
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/404 (43%), Positives = 247/404 (61%), Gaps = 19/404 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ EK+ L L+ FG+ QFR Q I +L+GR+ F +MPTG GKS+CYQ+PAL G
Sbjct: 3 IEEKDLLKSKLKEVFGYNQFRGNQEAIINNILNGRNTFVIMPTGAGKSLCYQLPALVTDG 62
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +V+SPLIALM+NQV L G+ +FL+ST T ++ ++ G S++LLYV PE
Sbjct: 63 LAIVISPLIALMKNQVDQLNAFGVNAQFLNSTLTKAEMNRVKKETLDG--SIKLLYVAPE 120
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ LKK + ++ VA+DEAHCIS WGHDFRP YR++ + L ++PI+AL
Sbjct: 121 SLTKEENIDFLKKAN----VSFVAVDEAHCISEWGHDFRPEYRRIKEIIGLLGNLPIIAL 176
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ D+ ++L ++ V KSSFNR NLFYEVR K A L L+ +
Sbjct: 177 TATATPKVQLDIQKNLHMEGADVFKSSFNRTNLFYEVRQKK---HAKKQLIQFLRDHKGK 233
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R E++ L+ G A YHAGL R DD+++ +VVAT+AFG
Sbjct: 234 SGIVYCLSRKKVVEIAELLNVNGFKAAPYHAGLEPAVREKNQDDFLNEDVDIVVATIAFG 293
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H+++PKS+E +YQE+GR+GRD L K L++Y +D ++E
Sbjct: 294 MGIDKPDVRFVVHYDVPKSLEGYYQETGRSGRDGLEGKCLMFYSHNDINKLE-------- 345
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K ++ +ER + + + +M Y E CRRK++L FGE+
Sbjct: 346 KFNKDKPVQERENARVL--LQEMSFYAESPVCRRKQLLHYFGEE 387
>gi|355568922|gb|EHH25203.1| hypothetical protein EGK_08985 [Macaca mulatta]
Length = 991
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQENATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|338711535|ref|XP_001492159.3| PREDICTED: ATP-dependent DNA helicase Q5, partial [Equus caballus]
Length = 955
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 181/431 (41%), Positives = 257/431 (59%), Gaps = 12/431 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THLSSPFDPGRRVRNTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSAQEKKELLSDLEQEKPRT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASASFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P +ALTATA P+V++DV +L L+ P+ + K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 AHAPCVALTATATPQVREDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELLSDPYGNLR 242
Query: 251 SV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G C IVYC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGCGIVYCRTREACEQLAIELSYRGVNAKAYHAGLKASERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+DR ++ F++ K +K + + S K ++ F +V +CE GCR I + FG+
Sbjct: 363 SRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKAAVVAFDALVSFCEELGCRHAAIAKYFGD 421
Query: 423 QVLGCVASVTH 433
C H
Sbjct: 422 APPACTKGCDH 432
>gi|410346341|gb|JAA40688.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|410261436|gb|JAA18684.1| Bloom syndrome, RecQ helicase-like [Pan troglodytes]
Length = 1417
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|114658901|ref|XP_510594.2| PREDICTED: Bloom syndrome protein isoform 2 [Pan troglodytes]
gi|332844655|ref|XP_003314898.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan troglodytes]
Length = 1417
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|351707850|gb|EHB10769.1| ATP-dependent DNA helicase Q5 [Heterocephalus glaber]
Length = 989
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/441 (42%), Positives = 263/441 (59%), Gaps = 25/441 (5%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 24 FGFDSFKTPLQERATMAVVKGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S +MQ + ++ DL+ KP +LLY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLALKVQVSSLNSKLSMQERKELLSDLEQEKPQTKLLYITPEMAASTSFQPILS 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA +VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATRQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKQPVATFKTPCFRANLFYDVQFKELISDPYGNLRDFCLKALGQKTDKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R +C++L+ LS+ G++ AYHAGL R+ V ++W+ + V+VAT++FGMG+
Sbjct: 264 VYCRTRESCEQLAIELSSRGVNAKAYHAGLKASDRTQVQNEWMEEKIPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIKKEVAKLQ 383
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH--------R 434
+ + S K ++ F +V +CE GCR I + FG+ C H R
Sbjct: 384 EKRGNKS-SDKATLLAFDALVTFCEELGCRHAAIAKYFGDAPPACTKGCDHCQNPAAVRR 442
Query: 435 VVSFISPFILLISSSKTDTCI 455
+ F L SSS T TCI
Sbjct: 443 QLDF-----LEHSSSWTKTCI 458
>gi|426238466|ref|XP_004013174.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Ovis aries]
Length = 985
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 260/426 (61%), Gaps = 12/426 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + +L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSSPFDPERRVRSMLKKVFGFDSFKTPLQERAIMAVVKGDQDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP
Sbjct: 63 LPALLAKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSVQERKELLSDLEQEKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
D P +ALTATA P+V++DV +L L+ P+ + K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 ADAPCVALTATATPQVREDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELLPDPYGNLR 242
Query: 251 SV-LKANGDTC-------AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
LKA G I+YC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCLKALGQKADKGLSGGGIIYCRTREACEQLAIELSYRGVNAKAYHAGLKAPERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
DR ++ F++ K +K + + S K ++ F +V +CE SGCR I + FG+
Sbjct: 363 SRSDRDQVSFLIKKEVAKLQEKRGNKA-SDKAAVLAFDALVAFCEESGCRHAAIAKYFGD 421
Query: 423 QVLGCV 428
C
Sbjct: 422 LPPACT 427
>gi|397472473|ref|XP_003807768.1| PREDICTED: Bloom syndrome protein isoform 1 [Pan paniscus]
gi|397472475|ref|XP_003807769.1| PREDICTED: Bloom syndrome protein isoform 2 [Pan paniscus]
Length = 1417
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|355754382|gb|EHH58347.1| hypothetical protein EGM_08175 [Macaca fascicularis]
Length = 991
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + ++ S K +I F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGSKA-SDKATILAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|395502424|ref|XP_003755581.1| PREDICTED: Bloom syndrome protein [Sarcophilus harrisii]
Length = 1445
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/405 (44%), Positives = 243/405 (60%), Gaps = 11/405 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI AVL G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 685 HSKE-MMKIFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSPGV 743
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 744 TIVISPLRSLIIDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 803
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++L+ LR+ P V ++AL
Sbjct: 804 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRHKFPSVSMMAL 863
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + NP V SFNR NL Y V K A+ L + K +
Sbjct: 864 TATANPRVQKDILTQLKILNPQVFSMSFNRHNLKYSVLPKKPKKVAFDCLEWIRKHHPHD 923
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 924 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 983
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 984 GMGIDKPDVRYVIHSSLPKSVEGYYQESGRAGRDGEMSHCLLFYNYHDVTRLKRLILMEK 1043
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
NS + T ++ MV YCE CRR ++L FGE
Sbjct: 1044 DGNSHTRQTH-------FNNLYSMVHYCENIIECRRIQLLSYFGE 1081
>gi|375149593|ref|YP_005012034.1| ATP-dependent DNA helicase RecQ [Niastella koreensis GR20-10]
gi|361063639|gb|AEW02631.1| ATP-dependent DNA helicase RecQ [Niastella koreensis GR20-10]
Length = 763
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 253/406 (62%), Gaps = 26/406 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ FG F+ Q I+ +L+G+D F + PTGGGKS+CYQ+PA+ G+ +++
Sbjct: 37 SLHQALQEQFGFDHFKGNQEAIIKTLLAGKDTFVIKPTGGGKSLCYQLPAIMSEGVAIII 96
Query: 85 SPLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
SPLIALM+NQV ++ K FL+ST T + ++++DL SG+ ++LYV PE L
Sbjct: 97 SPLIALMKNQVDLVRSYSSKDDVAHFLNSTLTKKEIREVHDDLLSGRT--KMLYVAPETL 154
Query: 141 TATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPIL 197
T F S LK L+ A+DEAHCIS WGHDFRP YR+L + + PD+P++
Sbjct: 155 TKQENLEFFSDLK-------LSFFAVDEAHCISEWGHDFRPEYRRLREMMTQINPDIPVI 207
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQ D++++L L++P + SSFNRPNL+YE++ K D ++ + +
Sbjct: 208 ALTATATPKVQSDIIKNLALKDPEIYISSFNRPNLYYEIQPKIKKDQTIKNIVRFIVSMK 267
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+Y L R T +EL+ L A GI AYHAGL+ K R+ D +++ QV+VAT+A
Sbjct: 268 GKSGIIYTLNRKTTEELADMLMANGIKAVAYHAGLDSKLRAERQDLFLNEDVQVIVATIA 327
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ D+R V HFNIPKS+E +YQE+GRAGRD L K +LYY D ++E ++
Sbjct: 328 FGMGIDKPDIRFVIHFNIPKSIENYYQETGRAGRDGLEGKCILYYSHKDVSKLEHLM--- 384
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ S RE ++ S+ V Y E CRRK ++ FGE+
Sbjct: 385 ---RDKPLSEREVGAQL----ISETVAYSESGVCRRKILMSYFGEE 423
>gi|255535742|ref|YP_003096113.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium
3519-10]
gi|255341938|gb|ACU08051.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium
3519-10]
Length = 732
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 178/402 (44%), Positives = 248/402 (61%), Gaps = 24/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L KLL+ +FG + F+ Q + IQ +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LPKLLKKYFGFSTFKGHQQEIIQNLLEGQDIFVLMPTGGGKSLCYQLPALMSEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + ++G+A SS Q+K ++++D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSDQGVAHVLNSSLNKTQIK-QVFDDIRAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK++ ++ VAIDEAHCIS WGHDFRP YR L + + + DVP++ALTA
Sbjct: 125 IKEDYLEFLKEVK----ISFVAIDEAHCISEWGHDFRPEYRNLKLIIDKIADVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + N LV K SFNRPNL+YEVR K +D ++ + A
Sbjct: 181 TATPKVQDDIQKTLGMSNALVFKESFNRPNLYYEVRPKVNID---REIVKFINARKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRRKVEEFAQLLQVNGINALPYHAGLDQKTRVMNQDKFLMEEADVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDIPKSLESYYQETGRAGRDGGEGYCLAFYDPKDIEKLEKFLAQ----- 352
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ S RE + +++ Y E S RR+ IL FGEQ
Sbjct: 353 -KPVSEREI----GLQLLNEVQGYAETSMSRRQYILYYFGEQ 389
>gi|371777407|ref|ZP_09483729.1| ATP-dependent DNA helicase [Anaerophaga sp. HS1]
Length = 726
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 180/401 (44%), Positives = 247/401 (61%), Gaps = 24/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ HFG F+ Q + I+ VL+G D F LMPTGGGKS+CYQ+PAL G +V+S
Sbjct: 7 LKRYLKKHFGFDTFKGNQEEIIKNVLAGNDTFVLMPTGGGKSLCYQLPALILEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ + GIA FL+S+ T K+ ED+ +G+ RLLYV PE
Sbjct: 67 PLIALMKNQVDAMRSFSEDDGIA-HFLNSSLTKSAIQKVKEDVIAGRT--RLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK++ ++ A+DEAHCIS WGHDFRP YR++ + N + + P++ALTA
Sbjct: 124 TKEENIQFLKQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGEAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + N V KSSFNRPNL+YEVR K +A ++ +LK N A
Sbjct: 180 TATPKVQHDIQKNLGMLNARVFKSSFNRPNLYYEVRPKV---NATREIIKILKDNPGKSA 236
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L GI AYHAG++ RS D ++ V+VAT+AFGMG
Sbjct: 237 IIYCLSRKKVEELAETLVVNGIKALAYHAGMDAATRSKNQDKFLMEEIDVIVATIAFGMG 296
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR+V H++IPKS+E +YQE+GRAGRD K + +Y D +++E K
Sbjct: 297 IDKPDVRMVIHYDIPKSLEGYYQETGRAGRDGGEGKCIAFYSYKDIQKLE--------KF 348
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q E+ K + + V Y E S CRRK +L FGE
Sbjct: 349 MQGKPLAEQEIGKQL--LLETVAYAESSLCRRKTLLHYFGE 387
>gi|435850506|ref|YP_007312092.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
gi|433661136|gb|AGB48562.1| ATP-dependent DNA helicase RecQ [Methanomethylovorans hollandica
DSM 15978]
Length = 692
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 253/397 (63%), Gaps = 18/397 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ LR +FG+ FR Q D I+ V++G+D F LMPTGGGKS+CYQ+PAL G+ +VVSPL
Sbjct: 3 RTLRKYFGYDTFRPLQEDIIKDVIAGKDVFVLMPTGGGKSICYQLPALLMNGVTVVVSPL 62
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ +L+ST + + +I ++L++ ++LLYV PE +
Sbjct: 63 ISLMKDQVDTLRANGVEAAYLNSTLSYKESNQIKQELENN--IIKLLYVAPERLTLSSTL 120
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L +I +NL AIDE+HCIS WGHDFRP YRKLS L+ P +PI+ALTATA PKV
Sbjct: 121 TLLDRIK----VNLFAIDESHCISEWGHDFRPEYRKLSILKRKYPHIPIIALTATATPKV 176
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+KD + L +++ +SFNR NL Y+VR K + Y + L+ D I+YC
Sbjct: 177 RKDTISQLHIEDCNTYVASFNRKNLLYQVRPKK---ETYEQIVEFLRKRKDKSGIIYCQS 233
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R T DEL+ L G + YHAGL+D ARS D +I +++VAT+AFGMGID+ +V
Sbjct: 234 RKTVDELTGKLRKSGFNALPYHAGLSDAARSRNQDIFIKDDAEIIVATIAFGMGIDKPNV 293
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+++P+++E++YQE+GR GRD L + +L++ D+ ++++ + Q +
Sbjct: 294 RFVIHYDLPRNLESYYQETGRGGRDGLECECILFFSRGDKYKIDYFI-------DQIAKS 346
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER + + +++DYC+ + CRRK +L FGE++
Sbjct: 347 EEREAAR--LKLKEVMDYCQSTICRRKMLLRYFGEEL 381
>gi|73965025|ref|XP_540436.2| PREDICTED: ATP-dependent DNA helicase Q5 [Canis lupus familiaris]
Length = 989
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 182/427 (42%), Positives = 255/427 (59%), Gaps = 13/427 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 5 PFDRERRVRSTLKKVFGFDSFKTPLQESATMAVVRGDKDVFVCMPTGAGKSLCYQLPALL 64
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP +LLY+
Sbjct: 65 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQEKKELLSDLEREKPQTKLLYI 124
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+P F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 125 TPEMAASPSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLAHAPC 184
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LK
Sbjct: 185 IALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 255 ANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 245 ALGQKADKGLLSGCGIVYCRTREACEQLATELSYRGVNAKAYHAGLKASERTLVQNEWME 304
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 305 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 364
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
R ++ F++ K +K + + S K +I F +V +CE GCR I + FG+
Sbjct: 365 RDQVSFLIRKEVAKLQEKRGNKA-SDKAAILAFDALVTFCEELGCRHAAIAKYFGDAPPA 423
Query: 427 CVASVTH 433
C H
Sbjct: 424 CTKGCDH 430
>gi|158338684|ref|YP_001519861.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
gi|158308925|gb|ABW30542.1| ATP-dependent DNA helicase RecQ [Acaryochloris marina MBIC11017]
Length = 736
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/408 (43%), Positives = 257/408 (62%), Gaps = 6/408 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + ++L + L+ +FG+ QFR Q I+A L +D +MPTGGGKS+C+Q+P L P
Sbjct: 8 PGSDFKSLEEALKHYFGYDQFRVGQRPVIEAALQRQDLMVVMPTGGGKSLCFQLPGLLLP 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLIALM++QV L+ I FL+S+ + ++ SGK ++LLYV P
Sbjct: 68 GLTVVISPLIALMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGK--IKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F++ L ++ ++ L A+DEAHC+S WGHDFRP YR+L+ +R VP+ A
Sbjct: 126 ERLLNESFLNLLDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYTQVPVYA 185
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D+++ L L+ P V +SFNRPNL+YEVR K YADL ++ +G
Sbjct: 186 LTATATERVRQDIIQQLQLRQPFVHVASFNRPNLYYEVRPKS--RQVYADLYREIRQHGQ 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E+SA L A GIS YHAG++D AR+ + +I QV+VATVAF
Sbjct: 244 DSGIVYCLSRREVNEISARLQADGISALPYHAGMSDSARTLNQERFIRDDVQVMVATVAF 303
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+N+P+++E +YQESGRAGRD PSK LL++ D +E+++ +
Sbjct: 304 GMGIDKPDVRFVIHYNLPRNIEGYYQESGRAGRDGEPSKCLLFFSTKDIHTIEWLIERK- 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ + E + + Q++DY E + CRR L FGE G
Sbjct: 363 -ADPETGNPLENEQRIARQQLRQVIDYAESTVCRRTVQLGYFGETFAG 409
>gi|426346798|ref|XP_004041058.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Gorilla gorilla
gorilla]
Length = 1006
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGCRHAAIAKYFGDVLPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|301768849|ref|XP_002919837.1| PREDICTED: Bloom syndrome protein-like [Ailuropoda melanoleuca]
gi|281350343|gb|EFB25927.1| hypothetical protein PANDA_008500 [Ailuropoda melanoleuca]
Length = 1423
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 244/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 658 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 716
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 717 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 776
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 777 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 836
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 837 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 896
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 897 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 956
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 957 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1016
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T I++ MV YCE + CRR ++L FGE+
Sbjct: 1017 EGNHHTRETH-------INNLYSMVHYCENITECRRIQLLAYFGEK 1055
>gi|194706042|gb|ACF87105.1| unknown [Zea mays]
Length = 406
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 162/233 (69%), Positives = 190/233 (81%), Gaps = 4/233 (1%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPT 62
K L ++ S +K P + L +L +FG++ FR KQL+AI+AVLSGRDCFCLMPT
Sbjct: 2 KGVLPIKGASGREKKAP----KELESVLNRYFGYSGFRGKQLEAIEAVLSGRDCFCLMPT 57
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GGGKSMCYQIPAL K GIVLV+ PLIALMENQV LK KG+ EFLSSTQ K +I+E
Sbjct: 58 GGGKSMCYQIPALVKTGIVLVIPPLIALMENQVASLKNKGVPAEFLSSTQASHTKQRIHE 117
Query: 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
DLD+G PSL+LLYVTPEL AT FM+KLKK+++RGLL LVAIDEAHCISSWGHDFRPSYR
Sbjct: 118 DLDTGNPSLKLLYVTPELVATSSFMAKLKKLYNRGLLGLVAIDEAHCISSWGHDFRPSYR 177
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
KLSSLR PD+P+LALTATA PKVQKDV+ SLCLQNP++L++SFNRPN+FYE
Sbjct: 178 KLSSLRKQFPDIPLLALTATAVPKVQKDVVSSLCLQNPVILRASFNRPNIFYE 230
>gi|167747470|ref|ZP_02419597.1| hypothetical protein ANACAC_02191 [Anaerostipes caccae DSM 14662]
gi|167652832|gb|EDR96961.1| ATP-dependent DNA helicase RecQ [Anaerostipes caccae DSM 14662]
Length = 616
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/401 (44%), Positives = 249/401 (62%), Gaps = 14/401 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ +FG FR+ Q I AVL GRD +MPTG GKS+C+QIPAL PGI LVVSPLI
Sbjct: 7 LLKQYFGFDDFREGQKPLIDAVLDGRDVLGIMPTGAGKSLCFQIPALMMPGITLVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L + GI FL+S+ +M K + G+ +++YV PE T GF
Sbjct: 67 SLMKDQVGALNQAGIHAAFLNSSLSMGQYRKALDLAREGR--YKIIYVAPERLETEGF-- 122
Query: 149 KLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
L+ S G+ ++ +A+DEAHC+S WG DFRPSY K+ S LP P+L A TATA +
Sbjct: 123 -LRFALSPGVDISFLAVDEAHCVSQWGQDFRPSYLKILSFLEKLPRRPVLGAYTATATVE 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD----TCAI 262
V++DV++ L L++PLV+ + F+R NLF+ V+ D Y +L S L+ + + I
Sbjct: 182 VKEDVLDILNLRDPLVVTTGFDRANLFFGVKKPR---DKYRELESYLREKEEKMPGSSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R + +E+ L G S YHAGL+D R DD+I R+Q++VAT AFGMGI
Sbjct: 239 VYCLSRKSVEEVCYQLREAGFSVTRYHAGLSDTERRENQDDFIYDRRQIMVATNAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+N+PK+ME++YQE+GRAGRD P++ +LY+G D+R F++ +
Sbjct: 299 DKPDVRFVIHYNMPKNMESYYQEAGRAGRDGEPAECILYFGAADQRTNRFLIEHGEDNQE 358
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
TR +K + QM YC SGC R IL+ FGE+
Sbjct: 359 LDEETRRIVMEKDLGRLKQMTFYCATSGCLRHYILDYFGEE 399
>gi|73668704|ref|YP_304719.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
gi|72395866|gb|AAZ70139.1| ATP-dependent DNA helicase RecQ [Methanosarcina barkeri str.
Fusaro]
Length = 881
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/407 (42%), Positives = 257/407 (63%), Gaps = 36/407 (8%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L +FG+ FR Q + I+ VL +D F LMPTGGGKSMCYQ+PAL G+ +VVSPLI+
Sbjct: 12 LHQYFGYTSFRPLQEEIIKDVLERKDVFVLMPTGGGKSMCYQLPALLMEGVTVVVSPLIS 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM++QV GL+ GIA ++S Q+ + VKT E+ L++LYV PE PG
Sbjct: 72 LMKDQVDGLEANGIAAACMNSAQSARENRDVKTAFLEN------RLKVLYVAPERLMMPG 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY---LPDVPILALTAT 202
++ LKK G ++L+AIDEAHCIS WGHDFRP YRKL LR+ PD+PI+ALTAT
Sbjct: 126 TLAFLKK----GKVSLLAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDIPIIALTAT 181
Query: 203 AAPKVQKDVMESLCL-----QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
A +V++D++ L L + P V +SFNR NL+YEVR K + ++++ L+ +
Sbjct: 182 ATERVREDIISQLNLHLPPEKGPYV--ASFNRKNLYYEVRPKK---ETFSEITDYLRRHR 236
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC R + + L+ L+ G YHAGL+D R+ + +I +++VAT+A
Sbjct: 237 GEAGIIYCQSRNSVEALTKKLNLAGFRALPYHAGLSDTERNRNQEMFIKDDVEIIVATIA 296
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +S+
Sbjct: 297 FGMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFISQK 356
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
T E+ S+ QMV YCEG+ CRR+ ++E FGE++
Sbjct: 357 ---------TNEKEKDISLVQLRQMVAYCEGNKCRRQTLMEYFGEEL 394
>gi|178056740|ref|NP_001116556.1| Bloom syndrome protein [Sus scrofa]
gi|168084100|dbj|BAG09489.1| Bloom syndrome protein [Sus scrofa]
Length = 1426
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 244/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA G+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSSGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ +++R LL IDEAHC+S WGHDFRP Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYNRKLLARFVIDEAHCVSQWGHDFRPDYKRMNMLRQKFPSVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILRPQVFTMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 902 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S+ LL+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISQCLLFYTYHDVTRLKRLILMEK 1021
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1022 DGNHHTKETH-------FNNLYSMVHYCENIAECRRIQLLAYFGEN 1060
>gi|109118218|ref|XP_001098200.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 4 [Macaca mulatta]
Length = 991
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q +A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQENATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ +P ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREEPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|428302021|ref|YP_007140327.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
gi|428238565|gb|AFZ04355.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 6303]
Length = 724
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 261/398 (65%), Gaps = 16/398 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+++FG+ FR Q + I+ L +D +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 11 LKYYFGYDNFRLGQREIIEEALQNKDLMVVMPTGGGKSLCFQLPALMKKGVTIVVSPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV L++ GIA FL SS + QV+++ L+ GK ++L+YV PE + F+
Sbjct: 71 LMQDQVETLRKNGIAATFLNSSLNSYQVRSREQAILE-GK--VKLVYVAPERLVSERFLP 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L ++ + + AIDEAHC+S WGHDFRP YR+L +LR +P+ ALTATA +V+
Sbjct: 128 FLDLVNHQVGIAGFAIDEAHCVSEWGHDFRPEYRQLITLRQRYSGIPLFALTATATDRVR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++E L LQ P + +SFNR NL+YEVR K YA++ +++ + + I+YCL R
Sbjct: 188 ADIIEQLGLQEPSIHIASFNRQNLYYEVRPK--TKTVYAEVLELIRES-EASTIIYCLTR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DEL+ L IS AYHAGL+D+ R++ +I +V+VATVAFGMGID+ DVR
Sbjct: 245 KQVDELTFKLQHDKISALAYHAGLSDEERTNNQTRFIRDDVRVMVATVAFGMGIDKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
LV H+N+P+++E +YQESGRAGRD PS+ +++G+ D + +E+ S NQ +SQ
Sbjct: 305 LVIHYNLPRNIEGYYQESGRAGRDGEPSRCTMFFGVGDIKTIEW--SINQKTDSQE---- 358
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ +K+ + Q++D+ EG+ CRR L FGE+ LG
Sbjct: 359 QLIAKQQL---RQVIDFAEGTDCRRTIQLGYFGERFLG 393
>gi|443725010|gb|ELU12752.1| hypothetical protein CAPTEDRAFT_102278, partial [Capitella teleta]
Length = 622
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 180/421 (42%), Positives = 249/421 (59%), Gaps = 18/421 (4%)
Query: 28 KLLRWHFGHAQFR-DKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+LL+ FGH +FR D Q +A++A V G D F MPTG GKS+CYQ+PA+AK GI V+S
Sbjct: 11 ELLKSVFGHDEFRSDLQRNAVEAAVRGGVDIFVSMPTGAGKSLCYQLPAVAKRGITFVIS 70
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++Q+ L+ I L+S + + + + DL+ +P +LLY+TPE AT G
Sbjct: 71 PLIALMQDQLEHLQALNIPANTLNSKMSAEERKAVMYDLNRERPHTKLLYITPEQAATSG 130
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+S + + + L+ +DEAHC+S WGHDFRP Y KL + R L VP +ALTATA P
Sbjct: 131 FISITEMLMKKKLVEFFVVDEAHCVSQWGHDFRPDYLKLGTYRKKLLGVPCIALTATATP 190
Query: 206 KVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV--------LKA- 255
V D+ SL L+ P+ K++ RPNLFY+V +KDLL+D Y DL LKA
Sbjct: 191 HVVGDIKNSLKLKAPVASFKATCFRPNLFYDVVFKDLLNDPYEDLRRFSLKSLDVDLKAD 250
Query: 256 ------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
N C IVYC R +C E+++ L++ G+ YHAGLN R+ DW+ R
Sbjct: 251 LKEVDWNTKGCGIVYCRTRESCGEVASRLTSKGVPAKPYHAGLNASLRTETQTDWMEGRV 310
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V+ AT++FGMG+D+ +VR V H+ +PKSM +YQESGRAGRD S LYY DDR
Sbjct: 311 AVIAATISFGMGVDKANVRFVAHWTLPKSMAGYYQESGRAGRDGRRSFCRLYYTKDDRNT 370
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVA 429
+ F+L K + S+ ++ E +K ++ F +V E CR I F + C
Sbjct: 371 VAFLLRKENIRPSKEGASAEARTKAALQSFECLVTMVETPQCRHAAIARYFCDDPPFCSK 430
Query: 430 S 430
S
Sbjct: 431 S 431
>gi|296204062|ref|XP_002749167.1| PREDICTED: Bloom syndrome protein isoform 2 [Callithrix jacchus]
Length = 1415
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERRLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G+S AYHAGL+D AR + WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLSALAYHAGLSDSARDEIQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1008
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1009 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1047
>gi|328778036|ref|XP_396209.4| PREDICTED: Bloom syndrome protein homolog, partial [Apis mellifera]
Length = 1179
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 242/407 (59%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 598 HSREML-KIFRQKFGLYSFRPNQLQAINAAILGFDCFILMPTGGGKSLCYQLPALLLPGV 656
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +S T IY +L P+L+LLYVTPE
Sbjct: 657 TIVISPLKSLILDQVQKLTSLDIPATHMSGGITDSQALGIYRELSKKDPALKLLYVTPEK 716
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+P F + L +++R LL IDEAHC+S WGHDFRP Y++L+ LR P VP++ L
Sbjct: 717 ISASPKFCNILSSLYNRRLLARFVIDEAHCVSQWGHDFRPDYKRLNCLRENYPKVPVIVL 776
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + P SSFNRPNL Y + + K+ D+ + + K
Sbjct: 777 TATATPRVRSDILHQLRITTPKWFMSSFNRPNLRYSIIAKKGKNCSDEVIGMIKTKYK-- 834
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + ++ I +YHAGL D RS + WIS +VV AT+
Sbjct: 835 -NDCGIVYCLSRKDCDDYAMHMRKNSIKALSYHAGLTDNNRSDIQGRWISEEIKVVCATI 893
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 894 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYTDMHRIRKMIEL 953
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ S N T I + +MV +CE + CRR + L FGE
Sbjct: 954 DNS-NPTIIKTH-------IDNLFKMVSFCENKTDCRRTQQLNYFGE 992
>gi|383859981|ref|XP_003705470.1| PREDICTED: Bloom syndrome protein homolog [Megachile rotundata]
Length = 1362
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 180/407 (44%), Positives = 243/407 (59%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ R FG FR QL AI A + G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 625 HSRE-MLKIFRQKFGLYSFRPNQLQAINAAMLGFDCFVLMPTGGGKSLCYQLPALLLPGV 683
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LS T T IY +L P+L+LLYVTPE
Sbjct: 684 TIVISPLKSLILDQVQKLTSLDIPAAHLSGTITDAQADAIYRELSKKDPALKLLYVTPEK 743
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + L ++ RGLL IDEAHC+S WGHDFRP Y++L LR V ++AL
Sbjct: 744 ISASQKFCNLLSSLYERGLLAKFVIDEAHCVSQWGHDFRPDYKRLKMLRENYTKVGMIAL 803
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L L P SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 804 TATATPRVRTDILHQLGLTRPKWFMSSFNRPNLRYSIITKKGKNCSDEVIAMIKTKYK-- 861
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R CD+ + + GI YHAGL D RS++ WIS +VV AT+
Sbjct: 862 -NDCGIVYCLSRKECDDYAVQMRKNGIKALGYHAGLTDNNRSNIQGRWISEEIKVVCATI 920
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 921 AFGMGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGENADCILFYNYADMHRIRKMIEM 980
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ S N + T +I + +MV +CE + CRR L FGE
Sbjct: 981 DNS-NPDAIKT-------NIDNLFKMVSFCENKTDCRRSLQLNYFGE 1019
>gi|195112008|ref|XP_002000568.1| GI22449 [Drosophila mojavensis]
gi|193917162|gb|EDW16029.1| GI22449 [Drosophila mojavensis]
Length = 1409
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 254/401 (63%), Gaps = 11/401 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 638 LMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 697
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S Q++ IY DL+S P ++LLYVTPE ++++P
Sbjct: 698 PLKSLIFDQVSKLSSLDICAKSISGDQSLDEVMTIYRDLESHPPLVKLLYVTPEKISSSP 757
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++++ ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 758 RFQDTLDQLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMALTATAT 817
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA-IV 263
P+V++D+++ L L + SSFNR NL Y+V K + D+ + +++ T + I+
Sbjct: 818 PRVRQDILQQLNLTHCKWFLSSFNRRNLRYQVLPKKGVS-TLDDMRNFIQSRPATASGII 876
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE++ + A GI +YHAGL D R S DWI+++ +V+ AT+AFGMGID
Sbjct: 877 YCLSRKECDEVAKKMCAVGIRALSYHAGLTDVVRESRQKDWITNKVRVICATIAFGMGID 936
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D +R++ ++ ++
Sbjct: 937 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMQRLKKMMDADR----- 991
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K I + +++V YCE + CRR + L+ FGE
Sbjct: 992 --ALQYHVKKIHIENLNRIVGYCENITDCRRAQQLDYFGEH 1030
>gi|403258502|ref|XP_003921799.1| PREDICTED: Bloom syndrome protein [Saimiri boliviensis boliviensis]
Length = 1499
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLVSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1008
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1009 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1047
>gi|355692996|gb|EHH27599.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 1008
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1009 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1047
>gi|434389644|ref|YP_007100255.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
gi|428020634|gb|AFY96728.1| ATP-dependent DNA helicase RecQ [Chamaesiphon minutus PCC 6605]
Length = 743
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 248/403 (61%), Gaps = 7/403 (1%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG+ +FR Q + I L+ RD +MPTGGGKS+C+Q+PAL K G+ +V
Sbjct: 9 ETLEHALKHYFGYDEFRSGQREIITTALANRDLLVVMPTGGGKSLCFQLPALLKNGVTIV 68
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV L GI FL+S+ T + K + +G+ ++LLYV PE
Sbjct: 69 VSPLIALMQDQVQLLANNGIPATFLNSSITTEEKRDRVAAIHNGE--IKLLYVAPERLNQ 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L +H + AIDEAHC+S WGHDFRP YRKL+ LR+Y P VP L LTATA
Sbjct: 127 EFISNFLVDLHQEVGIAGFAIDEAHCVSEWGHDFRPDYRKLAQLRHYFPKVPWLGLTATA 186
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D++ L L+ P V +SFNRPNL+YEVR K Y +L + +K + + I+
Sbjct: 187 TDRVRSDIINQLELREPHVHIASFNRPNLYYEVRRKTTA--PYKELLAQVKQS-EGSGII 243
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L GI YHAGL+ + R+ + +I +V+VATVAFGMGI+
Sbjct: 244 YCLSRKKVDELTTKLKQDGIKVVPYHAGLDGETRTKNQNSFIRDDVKVIVATVAFGMGIN 303
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E +YQESGRAGRD P+ LY+GM D + +E++++ Q + +
Sbjct: 304 KPDVRFVIHYDLPRNIEGYYQESGRAGRDGEPAHCTLYFGMGDIKTIEYLIA--QKVDPE 361
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ E + + ++++Y E + CRR L FGE G
Sbjct: 362 TGMALEDEQRIATQQLRRVINYAEATECRRIIQLGYFGESFPG 404
>gi|399927001|ref|ZP_10784359.1| ATP-dependent DNA helicase RecQ1 [Myroides injenensis M09-0166]
Length = 731
Score = 338 bits (866), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 249/403 (61%), Gaps = 25/403 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG +QF+ Q D +++++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LYKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA L+S+ T ++ ED+ SG +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSTEHGIA-HVLNSSLTKSEINQVKEDIKSG--VTKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++S LK++ L+ VAIDEAHCIS WGHDFRP YR L ++ L D+P++ LTA
Sbjct: 125 TKEEYVSFLKEVK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDIPMIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + V K+SFNRPNLFYE+R K + +D+ +K N
Sbjct: 181 TATPKVQEDILKNLEIPDANVFKASFNRPNLFYEIRPK--TKNIESDIIRFIKQNAGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPIAE 358
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
F+ ++V Y E S RRK +L FGE+
Sbjct: 359 QEIGFAL-----------LQEVVGYAETSMSRRKFLLHYFGEE 390
>gi|383420697|gb|AFH33562.1| Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 1008
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1009 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1047
>gi|109082375|ref|XP_001097543.1| PREDICTED: Bloom syndrome protein [Macaca mulatta]
Length = 1416
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 650 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 708
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 709 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 768
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 769 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 828
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 829 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 888
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 889 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 948
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 949 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 1008
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1009 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1047
>gi|443324439|ref|ZP_21053192.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
gi|442795958|gb|ELS05292.1| ATP-dependent DNA helicase RecQ [Xenococcus sp. PCC 7305]
Length = 709
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 174/397 (43%), Positives = 247/397 (62%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ FR Q I+ L+ +D +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 9 LKHFFGYDSFRAGQRKIIEEALNNQDLLVIMPTGGGKSLCFQLPALLKEGLTIVVSPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L++ GI FL+ST E + +GK ++LLYV PE T F S
Sbjct: 69 LMKDQVDALQDNGIGATFLNSTLDYAEGRSRQEAILAGK--IKLLYVAPERLLTEKFRSF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L ++ + LN +AIDEAHC+S WGHDFRP YR+L LR+ P PI A TATA +VQ
Sbjct: 127 LLRVANGLGLNAIAIDEAHCVSEWGHDFRPEYRQLKQLRSQFPQTPIFAFTATATKRVQD 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L++ V +SFNRPNL YEV+ KD + Y L + + +G IVYCL R
Sbjct: 187 DIIQQLGLRDANVHLASFNRPNLHYEVKSKD-KNSYYQLLKDIRRQSG--SGIVYCLSRR 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L GI YHAGL + RS ++ +V+VATVAFGMGI++ DVR
Sbjct: 244 RVEEIALKLKHDGIDALPYHAGLEAEVRSHNQTRFLRDDARVIVATVAFGMGINKPDVRF 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V HF++P+S+E+FYQESGRAGRD +KS L++ D +++++++ + N Q + ++
Sbjct: 304 VFHFDLPRSLESFYQESGRAGRDGETAKSTLFFSFGDIKKVDYLIEQKPDPNEQRIARQQ 363
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+Q++DY EG+ CRR IL FGE+ G
Sbjct: 364 ---------LNQVIDYAEGTVCRRTIILRYFGERFGG 391
>gi|440748399|ref|ZP_20927652.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
gi|436483223|gb|ELP39291.1| ATP-dependent DNA helicase RecQ [Mariniradius saccharolyticus AK6]
Length = 725
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 179/401 (44%), Positives = 245/401 (61%), Gaps = 22/401 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG FR Q + VL GR+ F +MPTG GKS+CYQ PA+ G +
Sbjct: 6 KEKLKKI----FGFNNFRGNQEPIVGNVLIGRNTFVIMPTGAGKSLCYQFPAVVSEGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L G+ FL+ST TK+ +++ SGK +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLNAFGVNAYFLNSTLNKSEITKVKKEVLSGKT--KLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ LK+ L+ VAIDEAHCIS WGHDFRP YRK+ S+ + P++PI+ALTA
Sbjct: 120 KDENIAFLKE----AKLSFVAIDEAHCISEWGHDFRPEYRKIKSIIGQIGPELPIVALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNRPNLFYEVR K + ++ + +K+
Sbjct: 176 TATPKVQQDIQRNLQMEEADIFKSSFNRPNLFYEVRPK-VKNETKKAIIKYIKSQKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L GIS A YHAGL+ R DD+++ V+VAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIAELLKVNGISAAPYHAGLDQAVRIKNQDDFLNEEIDVIVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y DD ++E K
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYDDIIKLE--------KF 346
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ ER + K + +M Y E S CRR+ +L FGE
Sbjct: 347 NKDKPVTERENAKVL--LEEMAAYAESSMCRRRVLLHYFGE 385
>gi|198433869|ref|XP_002126337.1| PREDICTED: similar to RecQ protein-like 5 [Ciona intestinalis]
Length = 1114
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 180/417 (43%), Positives = 252/417 (60%), Gaps = 15/417 (3%)
Query: 26 LVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ +L F H QF+ + Q +AI + +D F MPTG GKS+CYQ+PA+ G+ LV
Sbjct: 13 ITHILHNTFKHKQFKSQVQKEAILKICQRKKDAFVSMPTGAGKSLCYQLPAVFFGGVSLV 72
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM +Q+ LK I L+S QT+ + ++ DL S S RLLY+TPE TAT
Sbjct: 73 ISPLIALMCDQLNHLKRFNIVARTLNSKQTVSERNEVLADLFSPDSSCRLLYITPEQTAT 132
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
FM + K+H+R ++++ IDEAHC+S WGHDFRP Y KL SLR L +V +ALTATA
Sbjct: 133 AAFMELVMKLHARSKISMLIIDEAHCVSQWGHDFRPDYMKLGSLRQKLVNVQCIALTATA 192
Query: 204 APKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL---------CSVL 253
+VQKD+ L L + + + RPNL+Y+V+ K+L+ D Y DL S+
Sbjct: 193 TAEVQKDIFNLLHLPTSTAIFNTGVFRPNLYYDVKVKELVGDCYLDLQKFCQKALKISIA 252
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K+ + IVYC +R C +SA L G+ YHAGL++K R SV DW S + ++V
Sbjct: 253 KSKPEGAGIVYCHKREDCMTISAELLKRGLLAKPYHAGLSNKERESVQTDWTSGKVPIIV 312
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATV+FGMG+D+ +VR V H+ IPKSM +YQESGRAGRD S LYY DR + F+
Sbjct: 313 ATVSFGMGVDKSNVRFVAHWTIPKSMAGYYQESGRAGRDGEQSLCRLYYSRTDRNNINFL 372
Query: 374 LSKN---QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ K+ + S+S + ++ + +FS +V+YCEGS CR I F + + C
Sbjct: 373 IRKDFDRKRAKSKSETQFKKHVQAITENFSSLVNYCEGSKCRHAAIAAFFNDAMPDC 429
>gi|403280534|ref|XP_003931772.1| PREDICTED: ATP-dependent DNA helicase Q5 [Saimiri boliviensis
boliviensis]
Length = 990
Score = 337 bits (865), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 256/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKELLADLEQEKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRYLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGRAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKADKRLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGNPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K SI F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKASIMAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|380797039|gb|AFE70395.1| Bloom syndrome protein, partial [Macaca mulatta]
Length = 786
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 20 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 78
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 79 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 138
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 139 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 198
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 199 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 258
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 259 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 318
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 319 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 378
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 379 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 417
>gi|397484324|ref|XP_003813327.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Pan paniscus]
Length = 991
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + + + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSARERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K Q + S K +I F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAK-LQVKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYFGDALPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|402901083|ref|XP_003913486.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Papio anubis]
Length = 991
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 255/426 (59%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
PL + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PLDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + + DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKDLLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR L P
Sbjct: 129 TPEMAASSSFQPSLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRCRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVIHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K +I F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATILAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|402875293|ref|XP_003901445.1| PREDICTED: Bloom syndrome protein-like [Papio anubis]
Length = 1042
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 276 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 334
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 335 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 394
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 395 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 454
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K
Sbjct: 455 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHYPYD 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 515 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 574
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 575 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIIMEK 634
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 635 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 673
>gi|345798304|ref|XP_003434427.1| PREDICTED: Bloom syndrome protein [Canis lupus familiaris]
Length = 1420
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 242/405 (59%), Gaps = 11/405 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 653 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 711
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 712 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 771
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 772 VCASNRLLSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 831
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 832 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPHD 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 892 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 951
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 952 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1011
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1012 DGNRHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGE 1049
>gi|114670488|ref|XP_001144082.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 4 [Pan
troglodytes]
gi|410207584|gb|JAA01011.1| RecQ protein-like 5 [Pan troglodytes]
gi|410261024|gb|JAA18478.1| RecQ protein-like 5 [Pan troglodytes]
gi|410299660|gb|JAA28430.1| RecQ protein-like 5 [Pan troglodytes]
gi|410336147|gb|JAA37020.1| RecQ protein-like 5 [Pan troglodytes]
Length = 991
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + + + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSARERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K Q + S K +I F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAK-LQVKRGNKASDKATIMAFDALVTFCEELGCRHAAIAKYFGDALPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|197102262|ref|NP_001126651.1| ATP-dependent DNA helicase Q5 [Pongo abelii]
gi|55732243|emb|CAH92825.1| hypothetical protein [Pongo abelii]
Length = 990
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 178/426 (41%), Positives = 257/426 (60%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNTLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQETDKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNNWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K ++ F +V +CE GCR I + FG+ + C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKP-SDKATVMAFDALVTFCEELGCRHAAIAKYFGDALPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|126273765|ref|XP_001368666.1| PREDICTED: Bloom syndrome protein [Monodelphis domestica]
Length = 1401
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 242/405 (59%), Gaps = 11/405 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI AVL G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 635 HTKE-MMKIFHKKFGLHHFRTNQLEAINAVLLGEDCFVLMPTGGGKSLCYQLPACVSPGV 693
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 694 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 753
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 754 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPMMAL 813
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 814 TATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYSVLPKKPKKVAFDCLEWIRKHHPHD 873
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ +YHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 874 SGIIYCLSRRECDTMADTLQKDGLAALSYHAGLSDSARDEVQHKWINQDGCQVICATIAF 933
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 934 GMGIDKPDVRYVIHSSLPKSVEGYYQESGRAGRDGEMSHCLLFYNYHDVTRLKRLILMEK 993
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
NS + T ++ MV YCE CRR ++L FGE
Sbjct: 994 DGNSHTRQTH-------FNNLYSMVHYCENIIECRRIQLLSYFGE 1031
>gi|242071927|ref|XP_002451240.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor]
gi|241937083|gb|EES10228.1| hypothetical protein SORBIDRAFT_05g026350 [Sorghum bicolor]
Length = 624
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 245/403 (60%), Gaps = 30/403 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A ++ +DCF LMPTGGGKS+CYQ+PA PG+ +VVSPL++L+++
Sbjct: 220 FGNKSFRPLQYEACRAAMNNQDCFILMPTGGGKSLCYQLPATLHPGVTVVVSPLLSLIQD 279
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K I FL+S QT + + ++L G PS +LLYVTPE + A FM L+
Sbjct: 280 QIVALTYKFAIPAAFLNSQQTPAQASAVIQELRYGTPSFKLLYVTPERIAANYSFMEMLR 339
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V+KDV
Sbjct: 340 GLDQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATESVRKDV 399
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ +L + N ++LK SF+R NL YEV K DLL + + + I
Sbjct: 400 LSALRIPNAVILKRSFDRLNLNYEVIGKTKTPQKQLGDLLKERFM----------NKSGI 449
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHAGL + R+SV + W S +V+ AT+AFGMG
Sbjct: 450 VYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRTSVQEKWHSGEVKVICATIAFGMG 509
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD LP+ ++ Y D R+ +L +
Sbjct: 510 IDKPDVRFVIHNTMSKSIESYYQESGRAGRDDLPAHCIVLYQKKDFSRIVCMLRNADNFK 569
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
S+SF +KK M YCE + CRR+ +LE FGEQ
Sbjct: 570 SESFKVAMEQAKK-------MQTYCELKTECRRQALLEHFGEQ 605
>gi|4557365|ref|NP_000048.1| Bloom syndrome protein [Homo sapiens]
gi|1705486|sp|P54132.1|BLM_HUMAN RecName: Full=Bloom syndrome protein; AltName: Full=DNA helicase,
RecQ-like type 2; Short=RecQ2; AltName: Full=RecQ
protein-like 3
gi|1072122|gb|AAA87850.1| Bloom's syndrome protein [Homo sapiens]
gi|58003498|gb|AAW62255.1| Bloom syndrome [Homo sapiens]
gi|62739395|gb|AAH93622.1| Bloom syndrome [Homo sapiens]
gi|75517719|gb|AAI01568.1| Bloom syndrome [Homo sapiens]
gi|92096020|gb|AAI15033.1| Bloom syndrome [Homo sapiens]
gi|92097932|gb|AAI15031.1| Bloom syndrome [Homo sapiens]
gi|119622513|gb|EAX02108.1| Bloom syndrome, isoform CRA_b [Homo sapiens]
Length = 1417
Score = 337 bits (865), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|443316688|ref|ZP_21046123.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
gi|442783715|gb|ELR93620.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 6406]
Length = 720
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 253/400 (63%), Gaps = 18/400 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ FG+ QFR +Q AI+AVL+ +D +MPTGGGKS+CYQ+PAL + G+ +VV
Sbjct: 11 SLEAALKHFFGYDQFRLQQRAAIEAVLNQQDALVVMPTGGGKSLCYQLPALLRLGVTIVV 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L GIA FL SS M+ +++ Y DL G+ +LLYV PE +
Sbjct: 71 SPLIALMQDQVEALNNNGIAATFLNSSLDLMEARSREY-DLLQGR--TKLLYVAPERLLS 127
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F L ++ + L AIDEAHC+S WGHDFRP YR+L LR+ +P+LALTATA
Sbjct: 128 ENFWPFLTRLQQQVGLAGFAIDEAHCVSEWGHDFRPEYRQLHRLRSAFAGIPMLALTATA 187
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAI 262
+V++D+++ L LQ P VL +SFNRPNL+YEVR KD Y L +++ NG I
Sbjct: 188 TERVRQDIVQQLQLQKPEVLVASFNRPNLYYEVRPKD--RQTYGHLLQQVQSING--AGI 243
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R DE++ L GI+ YHAGL D R+ +I +V+VAT+AFGMGI
Sbjct: 244 IYCLSRKRVDEIALRLQNDGIAALPYHAGLPDLTRAENQRRFIRDDVRVMVATIAFGMGI 303
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H+++P+++E++YQESGRAGRD P+ +Y+G D + +++ + +
Sbjct: 304 NKPDVRFVVHYDLPRTLESYYQESGRAGRDGEPAHCTVYFGYADVSTVNYLIDQKPDERE 363
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q+ + ++ Q++DY E + CRR+ L FGE
Sbjct: 364 QNIARQQ---------LRQVIDYAESTVCRRQIQLGYFGE 394
>gi|444727835|gb|ELW68313.1| ATP-dependent DNA helicase Q5 [Tupaia chinensis]
Length = 973
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 253/426 (59%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERQVRSTLKKVFGFDSFKTPLQERATMAVVRGDKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVPVSSLNSKLSAQERKELLCDLEQDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLLSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGVLRSRLGHTPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELISDPYGNLRDFCLK 248
Query: 255 A-------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G+S AYHAGL R+ V +W+
Sbjct: 249 ALGQKADEGGSGCGIVYCRTREACEQLAIELSCRGVSAKAYHAGLKAAERTLVQSEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
R V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 RVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K ++ F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIKKEIAKLQEKRGNKA-SDKATLLAFDALVTFCEELGCRHAAIAKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|195054415|ref|XP_001994120.1| GH17364 [Drosophila grimshawi]
gi|193895990|gb|EDV94856.1| GH17364 [Drosophila grimshawi]
Length = 1404
Score = 337 bits (864), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 250/404 (61%), Gaps = 17/404 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 631 LMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 690
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S Q+M+ IY DL+ P ++LLYVTPE ++++
Sbjct: 691 PLKSLIFDQVSKLASLDICAKSMSGEQSMEDTMAIYRDLEGHSPLVKLLYVTPEKISSSA 750
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L + + ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 751 RFQDTLDHLSANNFISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMALTATAT 810
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V++D+++ L L + SSFNR NL ++V K LD+ + S ++ T +
Sbjct: 811 PRVRQDILQQLNLTHCKWFLSSFNRSNLRFQVLPKKGASTLDE----MRSFIQTRPITAS 866
Query: 262 -IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE++ +SA GI AYHAGL D AR S DWI+++ +V+ AT+AFGM
Sbjct: 867 GIIYCLSRKECDEVAHKMSAAGIRAVAYHAGLTDTARESRQKDWITNKVRVICATIAFGM 926
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ ++
Sbjct: 927 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMMRLKKMMDADR-- 984
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ K I + ++V YCE + CRR + L+ FGE
Sbjct: 985 -----ALEYHVKKIHIDNLHRIVGYCENITDCRRAQQLDYFGEH 1023
>gi|427717685|ref|YP_007065679.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
gi|427350121|gb|AFY32845.1| ATP-dependent DNA helicase RecQ [Calothrix sp. PCC 7507]
Length = 720
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 256/402 (63%), Gaps = 16/402 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++HFG+ +FR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEQALKYHFGYDRFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKKGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ FL SS +V+++ E + +G+ ++LLYV PE +
Sbjct: 67 PLIALMQDQVESLRNNNISATFLNSSLNAYKVRSR-EEAILNGR--VKLLYVAPERLLSE 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L I+ + ++ AIDEAHC+S WGHDFRP YR+L SLR PD+P +ALTATA
Sbjct: 124 RFLPFLDLINHQIGISSFAIDEAHCVSEWGHDFRPEYRQLKSLRKRYPDIPTVALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P + +SFNR NL+YE+R K AYA+L +++ + AIVY
Sbjct: 184 DRVRADIIQQLGLKQPSIHIASFNRQNLYYEIRSKTKY--AYAELLELIRET-EGSAIVY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L ++ YHAGL+D+ RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKVAALPYHAGLSDEERSKNQTRFIRDDVRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVRLV HF+IP+++E++YQESGRAGRD PS+ +++ D + +E+ + + Q
Sbjct: 301 PDVRLVIHFDIPRNLESYYQESGRAGRDGEPSRCTVFFSFGDIKTIEWSIDQKTDPQEQL 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ QM+DY EG+ CRR L FGE+ G
Sbjct: 361 IAKQQ---------LRQMIDYAEGTDCRRTIQLGYFGERFPG 393
>gi|189054874|dbj|BAG36927.1| unnamed protein product [Homo sapiens]
Length = 1417
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQGGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|219518767|gb|AAI43281.1| BLM protein [Homo sapiens]
Length = 1042
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 276 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 334
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 335 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 394
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 395 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 454
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 455 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 515 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 574
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 575 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 634
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 635 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 673
>gi|410960520|ref|XP_003986837.1| PREDICTED: Bloom syndrome protein [Felis catus]
Length = 1428
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 662 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 720
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 721 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 780
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 781 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 840
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 841 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 900
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 901 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 960
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 961 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1020
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1021 DGNRHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1059
>gi|149690733|ref|XP_001502766.1| PREDICTED: Bloom syndrome protein [Equus caballus]
Length = 1421
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 178/406 (43%), Positives = 244/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 657 HTKE-MMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 715
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 716 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 775
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ ++ L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 776 VCASNRLITTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 835
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + +P V SFNR NL Y V K A+ L + K +
Sbjct: 836 TATANPRVQKDILTQLKILSPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 895
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR +V WI+ QV+ AT+AF
Sbjct: 896 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDAVQHKWINQDGCQVICATIAF 955
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 956 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILMEK 1015
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1016 DGNHHTKETH-------FNNLYSMVHYCENIAECRRIQLLAYFGEH 1054
>gi|392337763|ref|XP_003753349.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 642 HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 701 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 761 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A L + K +
Sbjct: 821 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD 880
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 881 SGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 940
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 941 GMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1000
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + TRE +++ MV YCE + CRR ++L FGE+
Sbjct: 1001 DGN---YHTRE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1039
>gi|110225360|ref|NP_001035992.1| Bloom syndrome protein homolog isoform 2 [Mus musculus]
gi|5921178|sp|O88700.1|BLM_MOUSE RecName: Full=Bloom syndrome protein homolog; Short=mBLM; AltName:
Full=RecQ helicase homolog
gi|3452495|emb|CAB10933.1| BLM protein [Mus musculus]
gi|162318414|gb|AAI57096.1| Bloom syndrome homolog (human) [synthetic construct]
Length = 1416
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 717
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 718 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 778 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 837
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 838 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 897
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T+E +++ MV YCE + CRR ++L FGE+
Sbjct: 1018 DGN---YHTKE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1056
>gi|392344358|ref|XP_003748936.1| PREDICTED: Bloom syndrome protein homolog [Rattus norvegicus]
Length = 1401
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 642 HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 701 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 761 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A L + K +
Sbjct: 821 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD 880
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 881 SGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 940
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 941 GMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1000
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + TRE +++ MV YCE + CRR ++L FGE+
Sbjct: 1001 DGN---YHTRE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1039
>gi|195451292|ref|XP_002072850.1| GK13825 [Drosophila willistoni]
gi|194168935|gb|EDW83836.1| GK13825 [Drosophila willistoni]
Length = 1457
Score = 336 bits (862), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/401 (43%), Positives = 248/401 (61%), Gaps = 11/401 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 685 MTQALSYSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 744
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S Q+M IY DL+S P ++LLYVTPE ++++
Sbjct: 745 PLKSLIFDQVNKLASLDICAKSMSGEQSMSDAMTIYRDLESHPPLVKLLYVTPEKISSSA 804
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 805 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPTMALTATAT 864
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
P+V+ D++ L L SSFNR NL Y+V K D+ + +K+ ++ I+
Sbjct: 865 PRVRLDILSQLNLTQCKWFLSSFNRSNLRYKVLPKKGAS-TLEDISAFIKSRPANSSGII 923
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CD++S + GI AYHAGL+D R S DWI S+ +V+ AT+AFGMGID
Sbjct: 924 YCLSRKECDDVSQKMCKAGIRSVAYHAGLSDTERESRQKDWILSKVRVICATIAFGMGID 983
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++PKS+E +YQE+GRAGRD ++ +LYY D R++ +L +++ N
Sbjct: 984 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDIAECILYYNYSDMLRLKKMLDGDRALN-- 1041
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
++ + K I + ++V YCE + CRR + L+ FGE
Sbjct: 1042 -YNVK----KMHIDNLYRIVGYCENITDCRRAQQLDYFGEH 1077
>gi|226693393|ref|NP_031576.4| Bloom syndrome protein homolog isoform 1 [Mus musculus]
Length = 1419
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 662 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 720
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 721 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 780
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 781 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 840
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 841 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 900
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 901 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 960
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 961 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1020
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T+E +++ MV YCE + CRR ++L FGE+
Sbjct: 1021 DGN---YHTKE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1059
>gi|189502511|ref|YP_001958228.1| hypothetical protein Aasi_1165 [Candidatus Amoebophilus asiaticus
5a2]
gi|189497952|gb|ACE06499.1| hypothetical protein Aasi_1165 [Candidatus Amoebophilus asiaticus
5a2]
Length = 724
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 173/398 (43%), Positives = 249/398 (62%), Gaps = 19/398 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG+ FR+ Q I+ +L G++ F +MPTGGGKS+CYQ+PA+ + G+ +++S
Sbjct: 9 LYKELKEIFGYDNFREDQEAIIKNILQGKNTFVIMPTGGGKSLCYQLPAIMQEGLAIIIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L+ +GI L+ST + +V + +++ SG + ++LYV PE
Sbjct: 69 PLIALMKDQVDQLQSRGIKAALLNSTLSQKVINETKQEVLSG--NTKMLYVAPETLNKED 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAA 204
++ LK + L+ +A+DEAHCIS WGHDFRP YR + + N L VPI+ALTATA
Sbjct: 127 NLAFLK----QAKLSFIAVDEAHCISDWGHDFRPEYRNIRYVANQQLGRVPIIALTATAT 182
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P+VQ D++ +L + + +SSFNRPNL+YE+RYK+ + A L ++K IVY
Sbjct: 183 PRVQLDILNNLDINDATTFQSSFNRPNLYYEIRYKE--EQANKQLIKLIKEQPQIMGIVY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R DEL+A L+ I A YHAGL+ R + ++ + V+VAT+AFGMGID
Sbjct: 241 CQSRKQVDELAALLNLNDIKAAPYHAGLDANVRVKNQEAFLQKQYNVIVATIAFGMGIDT 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++PKS+EA+YQE+GRAGRD LPS L+ Y +D R+E + N+SK
Sbjct: 301 PDVRFVIHYDMPKSLEAYYQETGRAGRDSLPSTCLMLYNPEDFIRLERL---NKSK---- 353
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER K + +M Y CRRK++L FGE
Sbjct: 354 -PNGEREKSKVL--LEEMKGYITSGVCRRKQLLYYFGE 388
>gi|391333104|ref|XP_003740962.1| PREDICTED: Bloom syndrome protein-like [Metaseiulus occidentalis]
Length = 1216
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 183/419 (43%), Positives = 247/419 (58%), Gaps = 20/419 (4%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+K +HEK FG +FR Q AI A L DCF LMPTGGGKS+CYQ+PA+
Sbjct: 555 SKDMHEK------FHNFFGLTEFRHNQKQAINAALLNNDCFVLMPTGGGKSLCYQLPAIC 608
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ +VVSPL +L+ +QV LK GI + S + + ++YEDL +P L+LLYV
Sbjct: 609 SKGVTVVVSPLKSLIYDQVTKLKSMGIPATAMMSEVSDR---EVYEDLRRAEPLLKLLYV 665
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
TPE L A+ + +K+H R L IDEAHC+S WGHDFR Y KL LR P VP
Sbjct: 666 TPEKLAASNLLKNTFEKLHRRNQLARFVIDEAHCVSQWGHDFRVDYHKLGQLRQTFPGVP 725
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
I+ALTATA+P V+KD+++ L ++ P SFNRPNL Y++ K + ++
Sbjct: 726 IMALTATASPSVRKDILKQLLMKEPKWFLQSFNRPNLRYQI-VKYFSGSPVTHIIKLISN 784
Query: 256 NG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ IVYCL R CD+ +A L + GIS +YHAG+ND RSS+ D WI+ RK VV A
Sbjct: 785 KYFEKSGIVYCLSRKDCDQTAAKLESAGISAVSYHAGMNDAERSSIQDMWINGRKHVVCA 844
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ +VR V H +PKS+E +YQE+GRAGRD LPS +L+Y D R + ++
Sbjct: 845 TIAFGMGIDKANVRFVFHTGLPKSVEGYYQETGRAGRDGLPSDCVLFYRFADYIRWQKLI 904
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGCVASVT 432
+ T S K +++ MV +C C RK IL FG++ + SV
Sbjct: 905 TGGA-------ETTASSRKIHLANLWHMVRFCMNEIDCIRKLILRYFGQEFDKKLCSVN 956
>gi|344201636|ref|YP_004786779.1| RecQ familyATP-dependent DNA helicase [Muricauda ruestringensis DSM
13258]
gi|343953558|gb|AEM69357.1| ATP-dependent DNA helicase, RecQ family [Muricauda ruestringensis
DSM 13258]
Length = 733
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 180/400 (45%), Positives = 243/400 (60%), Gaps = 28/400 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG ++F+ Q D IQ +LSG D F +MPTGGGKS+CYQ+PA+ + G +VVSPLIA
Sbjct: 12 LKKYFGFSKFKGLQEDVIQNILSGNDTFVIMPTGGGKSLCYQLPAIMEEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ + GIA SS +V+ ++ ED+ G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISEQHGIAHVLNSSLTKTEVR-QVKEDITKG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ LK + L+ VA+DEAHCIS WGHDFRP YR L + N L D +PI+ LTATA
Sbjct: 129 NVDFLKNVK----LSFVAVDEAHCISEWGHDFRPEYRNLRGIINRLGDNIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + V K+SFNRPNLFYEVR K D AD+ +K N I+Y
Sbjct: 185 PKVQEDIIKNLGMTDAKVFKASFNRPNLFYEVRPK--TKDVDADIIRFVKQNQGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDVEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGE 422
F + + +++ I + ++V Y E S RRK IL FGE
Sbjct: 351 FMSGKPVAEQEIGNALLQEIVAYAETSMSRRKFILHYFGE 390
>gi|3370996|dbj|BAA32001.1| mBlm [Mus musculus]
Length = 1416
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 717
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 718 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 778 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 837
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 838 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 897
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T+E +++ MV YCE + CRR ++L FGE+
Sbjct: 1018 DGN---YHTKE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1056
>gi|148675036|gb|EDL06983.1| Bloom syndrome homolog (human), isoform CRA_b [Mus musculus]
Length = 1417
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 660 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 718
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 719 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 778
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 779 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 838
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 839 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 898
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 899 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 958
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 959 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1018
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T+E +++ MV YCE + CRR ++L FGE+
Sbjct: 1019 DGN---YHTKE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1057
>gi|317471202|ref|ZP_07930570.1| ATP-dependent DNA helicase RecQ [Anaerostipes sp. 3_2_56FAA]
gi|316901308|gb|EFV23254.1| ATP-dependent DNA helicase RecQ [Anaerostipes sp. 3_2_56FAA]
Length = 616
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 178/401 (44%), Positives = 248/401 (61%), Gaps = 14/401 (3%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ +FG FR+ Q I AVL GRD +MPTG GKS+C+QIPAL PGI LVVSPLI
Sbjct: 7 LLKQYFGFDDFREGQKPLIDAVLDGRDVLGIMPTGAGKSLCFQIPALMMPGITLVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L + GI FL+S+ +M K + G+ +++YV PE T GF
Sbjct: 67 SLMKDQVGALNQAGIHAAFLNSSLSMGQYRKALDLAREGR--YKIIYVAPERLETEGF-- 122
Query: 149 KLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
L+ S G+ ++ +A+DEAHC+S WG DFRPSY K+ S LP P+L A TATA +
Sbjct: 123 -LRFALSPGVDISFLAVDEAHCVSQWGQDFRPSYLKILSFLEKLPRRPVLGAYTATATVE 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD----TCAI 262
V++DV++ L L++PLV+ + F+R NLF+ V+ D Y +L S L+ + + I
Sbjct: 182 VKEDVLDILNLRDPLVVTTGFDRANLFFGVKKPR---DKYRELESYLREKEEKMPGSSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R + +E+ L G S YHAGL+D R DD+I R+Q++VAT AFGMGI
Sbjct: 239 VYCLSRKSVEEVCYQLREAGFSVTRYHAGLSDTERRENQDDFIYDRRQIMVATNAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+N+PK+ME++YQE+GRAGRD P++ +LY+G D+R F++ +
Sbjct: 299 DKPDVRFVIHYNMPKNMESYYQEAGRAGRDGEPAECILYFGAADQRTNRFLIEHGEDNQE 358
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
TR +K + QM YC S C R IL+ FGE+
Sbjct: 359 LDEETRRIVMEKDLGRLKQMTFYCATSSCLRHYILDYFGEE 399
>gi|395861752|ref|XP_003803142.1| PREDICTED: Bloom syndrome protein [Otolemur garnettii]
Length = 1389
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 641 HTKE-MLKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 699
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 700 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 759
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 760 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 819
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 820 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKYHPYD 879
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D R V WI+ QV+ ATVAF
Sbjct: 880 SGIIYCLSRRECDTMAGTLRKDGLAALAYHAGLSDSERDEVQHKWINQDGCQVICATVAF 939
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 940 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEMSHCLLFYTYHDVTRLKRLIMMEK 999
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1000 DGNHHTKETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1038
>gi|428224630|ref|YP_007108727.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
gi|427984531|gb|AFY65675.1| ATP-dependent DNA helicase RecQ [Geitlerinema sp. PCC 7407]
Length = 741
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 253/404 (62%), Gaps = 9/404 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ FG+ FR Q + ++A L RD +MPTGGGKS+C+Q+PAL G+ +V
Sbjct: 13 DTLEDALKHFFGYESFRPGQREIVEAALDRRDVMVIMPTGGGKSLCFQLPALLNSGVSVV 72
Query: 84 VSPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VSPLIALM++QV L++ G+ FL SS +V+++ E LD ++LLYV PE
Sbjct: 73 VSPLIALMQDQVASLQKNGVGATFLNSSISGEEVRSRQNEILDG---RIKLLYVAPERLL 129
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ L + + L+ IDEAHC+S WGHDFRP YR+L +R P+VP++ALTAT
Sbjct: 130 NEQFLLWLNDVRQQVGLSTFVIDEAHCVSEWGHDFRPEYRQLLQIRQRFPEVPVMALTAT 189
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A +V++D+ E L L+ P V +SFNRPNL+YEVR K ++Y +L ++ +C I
Sbjct: 190 ATDRVRQDMGEQLALRQPYVHIASFNRPNLYYEVRPKG--KNSYDELLQKIRHVEGSC-I 246
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R +EL+ L GI YHAGL+D R+ +I +V+VAT+AFGMGI
Sbjct: 247 VYCLSRRRVNELTTRLQQEGIEALPYHAGLSDDVRTENQTRFIRDDVRVIVATIAFGMGI 306
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVRLV H+++P+++EA+YQESGRAGRD ++ LL+YG D + +++I+ +Q +
Sbjct: 307 NKPDVRLVMHYDLPRNIEAYYQESGRAGRDGETAQCLLFYGPGDIKSLDWII--DQKVHP 364
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ E+ + + Q++DY E + CRR L FGE+ G
Sbjct: 365 VTGEPLEQEQRIARQQLRQVIDYAESTVCRRTIQLSYFGEEFPG 408
>gi|148675035|gb|EDL06982.1| Bloom syndrome homolog (human), isoform CRA_a [Mus musculus]
Length = 1420
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 245/406 (60%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 902 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1021
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T+E +++ MV YCE + CRR ++L FGE+
Sbjct: 1022 DGN---YHTKE----THVNNLYSMVHYCENITECRRIQLLAYFGEK 1060
>gi|88603641|ref|YP_503819.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
gi|88189103|gb|ABD42100.1| ATP-dependent DNA helicase RecQ [Methanospirillum hungatei JF-1]
Length = 606
Score = 336 bits (861), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/394 (44%), Positives = 236/394 (59%), Gaps = 19/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
L RW FG+ +R Q + I VL GRD ++ TGGGKS+CYQIPAL + G+ +V+SPLI
Sbjct: 12 LHRW-FGYRTYRPGQKEIITHVLEGRDVLAVIATGGGKSLCYQIPALIRDGVGIVISPLI 70
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L E GI FL+STQ ++ K I + G SL+LLY++PE P F+
Sbjct: 71 ALMKDQVDCLAESGIPAAFLNSTQDVKDKRSIEGSILDG--SLKLLYISPERLVQPSFIE 128
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LK ++L AIDEAHCIS WGH+FRP YRKLS +R DVPI+ALTATA P V+
Sbjct: 129 FLKSTR----ISLFAIDEAHCISQWGHEFRPEYRKLSIIRRTFADVPIIALTATATPSVR 184
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L NP V SFNR NL Y + K+ D L LK++ + IVYC +
Sbjct: 185 SDIISELSLHNPAVFVGSFNRENLIYRIVKKE---DGEQQLVQFLKSHQNESGIVYCFSK 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+L+ L G S YHA L R D ++ +++VATVAFGMGI++ DVR
Sbjct: 242 RQVTDLARVLQKNGFSALPYHADLPKSVRHETQDRFLRDEVRIIVATVAFGMGINKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF++PK++E +YQE+GRAGRD P++ LL Y D R++E+++ + + S R
Sbjct: 302 FVVHFDLPKNLEHYYQETGRAGRDGDPAECLLLYSRGDFRKIEYLIEQMAEGTERQVSLR 361
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ +MV YCE CRR +L FGE
Sbjct: 362 K---------LHEMVGYCESRACRRAVLLTYFGE 386
>gi|254425231|ref|ZP_05038949.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
gi|196192720|gb|EDX87684.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 7335]
Length = 738
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/408 (40%), Positives = 248/408 (60%), Gaps = 16/408 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
+++ AL L+ FGH QFR +Q ++ VL +D +MPTGGGKS+CYQ+PAL +PG
Sbjct: 3 NQEPALESALKHFFGHDQFRFEQRSIVEQVLKNKDVLVIMPTGGGKSLCYQLPALLRPGT 62
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLIALM++QV+ LK+ GI FL+ST + + +DL GK +++LY+ PE
Sbjct: 63 TIVISPLIALMQDQVVALKDNGIEATFLNSTLSFEEVRSRQKDLLMGK--IKILYIAPER 120
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
T F LK++ + ++ AIDEAHC+S WGHDFRP YR+L ++ P +PI+ALT
Sbjct: 121 LFTSSFHDFLKQLSQKVGISTFAIDEAHCVSEWGHDFRPEYRQLFQIKQLYPQIPIIALT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT- 259
ATA +V+ D+++ L L +P V SSFNR NL+YEV K Y L + ++ +
Sbjct: 181 ATATQRVRTDIVQQLRLNDPTVYISSFNRQNLYYEVIQKS--RKPYQQLLAKIQQHQGKE 238
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL R DE+S L+ GIS YHAGL + R + +I Q++VATVA
Sbjct: 239 KGAGIIYCLSRKHVDEVSNNLTKDGISALPYHAGLTNTQRENNQTKFIRDDVQIIVATVA 298
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ DVR V H+++P+++E++YQESGRAGRD + + +G D + +++ +
Sbjct: 299 FGMGINKPDVRFVIHYDLPRNLESYYQESGRAGRDSEAASCTILFGWGDVHTVRYLIGQK 358
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q + ++ +Q++ Y E CRR+ L FGEQ +
Sbjct: 359 ADPGEQRIAQQQ---------LNQIISYAESPICRRQVQLNYFGEQFI 397
>gi|189527306|ref|XP_701357.3| PREDICTED: Bloom syndrome protein homolog, partial [Danio rerio]
Length = 1261
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 179/404 (44%), Positives = 239/404 (59%), Gaps = 10/404 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA G+ +V+S
Sbjct: 666 MMKIFHKKFGLHQFRFNQLEAINASLLGEDTFVLMPTGGGKSLCYQLPACVSAGVTVVIS 725
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL +L+ +QV L I LS + +IY L P+++LLY TPE G
Sbjct: 726 PLRSLIVDQVQKLTTLDICATSLSGDKKDSEAARIYMQLSRKDPAIKLLYATPEKVCASG 785
Query: 146 FM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
M S L+ ++ RGLL + IDEAHC+S WGHDFRP Y++L LR P+VPI+ALTATA
Sbjct: 786 RMISALQNLYERGLLARLVIDEAHCVSQWGHDFRPDYKRLHELRRMFPNVPIMALTATAT 845
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P+VQKD++ L + P V SFNR NL Y V K + + K IVY
Sbjct: 846 PRVQKDILNQLAMTRPQVFTMSFNRNNLKYSVLPKKPKKVDEECIQWIKKYYPRDSGIVY 905
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGID 323
CL R CD L+ L GI+ AYHAGL+D R V + WI+ QV+ AT+AFGMGID
Sbjct: 906 CLSRNDCDTLADSLQRAGIAALAYHAGLSDSDREYVQNKWINQDGCQVMCATIAFGMGID 965
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ +++ ++ N Q
Sbjct: 966 KPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYSYSDVIRIKRLIAMDKDGNQQ 1025
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLG 426
S +T I++ MV +CE + CRR ++L FGE
Sbjct: 1026 SKATH-------INNLHSMVHFCENVAECRRIQLLAYFGEHTFN 1062
>gi|395825932|ref|XP_003786174.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Otolemur
garnettii]
Length = 987
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 250/411 (60%), Gaps = 12/411 (2%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI LVVSPLIAL+
Sbjct: 24 FGFDSFKTPLQKSATMAVVKGDKDVFVCMPTGAGKSLCYQLPALLTKGITLVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q + ++ DL+ KP RLLY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLTLKVQVSSLNSKLSAQERKELLSDLEREKPQTRLLYITPEMAASASFQPTLN 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGTLRSRLGRTPCVALTATATPQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKQPVATFKTPCFRANLFYDVQFKELISDLYGNLRDFCLKALGQKTDKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R C++L+ LS G++ AYHAGL R+ V ++W+ + V+VAT++FGMG+
Sbjct: 264 VYCRTREACEQLAVELSCRGVNAKAYHAGLKASERTLVQNEWMEEKIPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM + QESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYCQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ 383
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH 433
+ + S K ++ F +V +CE GCR I + FG+ CV H
Sbjct: 384 EKRGNKA-SDKATLLAFDALVTFCEELGCRHAAIAKYFGDAPPTCVKGCDH 433
>gi|344284334|ref|XP_003413923.1| PREDICTED: Bloom syndrome protein [Loxodonta africana]
Length = 1429
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 180/406 (44%), Positives = 242/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 663 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACIAPGV 721
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 722 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 781
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 782 VCASNRLISTLENLYQRTLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPLVPVMAL 841
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 842 TATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 901
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ ATVAF
Sbjct: 902 SGIIYCLSRRECDTMAETLKKNGLAALAYHAGLSDCARDEVQHKWINQDGCQVICATVAF 961
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 962 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLILTEK 1021
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1022 DGNQHTKETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1060
>gi|332707801|ref|ZP_08427828.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
gi|332353504|gb|EGJ33017.1| ATP-dependent DNA helicase RecQ [Moorea producens 3L]
Length = 709
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 168/407 (41%), Positives = 254/407 (62%), Gaps = 14/407 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ + +L L+ FGH FR Q I+ L +D +MPTGGGKS+CYQ+PAL KPG
Sbjct: 1 MEQSPSLEHALKHFFGHDCFRPGQQQIIEEALQNQDLLIIMPTGGGKSLCYQLPALLKPG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +VVSPLI+LM++QV L++ GI F++ST + Q + GK ++LLYV+PE
Sbjct: 61 LTVVVSPLISLMQDQVTSLEDNGIGATFINSTLSFQQMRSREAAILEGK--IKLLYVSPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F+ L ++ S+ + AIDEAHC+S WGHDFRP YR+L LRN P+ +LAL
Sbjct: 119 RLLAEQFIPFLDRVRSQIGIPTFAIDEAHCVSQWGHDFRPDYRQLKLLRNRYPNSSVLAL 178
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA +VQ+D+++ L L+ P V +SFNRPNL+Y+V+ K +Y L ++++ +
Sbjct: 179 TATATNRVQQDIIQQLELRQPKVHIASFNRPNLYYDVQPKQ--RQSYQQLLKQIRSHQGS 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC R + +E++ L GIS YH G+ DKAR++ + +I +V+VATVAFG
Sbjct: 237 -GIVYCTSRRSVEEVAFRLQNDGISALPYHGGMTDKARATNQNRFIRDDVRVIVATVAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ DVR V H+++P+++E++YQESGRAGRD P+ + Y D ++ +++ +
Sbjct: 296 MGINKPDVRFVIHYDLPRNIESYYQESGRAGRDGEPATCTVLYSASDISKLHYLIDQKPD 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q + ++ +Q+VDY EG+ CRR+ +L FGE+ G
Sbjct: 356 PKEQRIAYQQ---------LNQIVDYAEGTDCRRRILLGYFGERFPG 393
>gi|410907219|ref|XP_003967089.1| PREDICTED: Bloom syndrome protein homolog [Takifugu rubripes]
Length = 1392
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 178/409 (43%), Positives = 245/409 (59%), Gaps = 16/409 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
H + ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA PG
Sbjct: 625 FHYSQEMMKIFHKRFGLHQFRYNQLEAINATLQGEDTFVLMPTGGGKSLCYQLPACVSPG 684
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +V+SPL +L+ +Q+ L I LS + +IY L +P ++LLYVTPE
Sbjct: 685 VTVVISPLKSLIVDQIQKLTTLDIPATSLSGDLGEREAGRIYMQLSRKEPIVKLLYVTPE 744
Query: 140 -LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
++A+ +S L+ ++ RGLL IDEAHC+S WGHDFRP Y+KL LR P VP++A
Sbjct: 745 KVSASNKLISALQNLYERGLLARFVIDEAHCVSQWGHDFRPDYKKLHELRKKFPQVPMMA 804
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA 255
LTATA P+VQKD+ L + P V SFNR NL Y V + K + +D + + K
Sbjct: 805 LTATATPRVQKDIHNQLNMNRPQVFTMSFNRTNLKYAVLPKKPKKVDEDC---ISWIKKH 861
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVA 314
I+YCL R CD ++ L G+ +YHAGL+D R V WI+ QV+ A
Sbjct: 862 YPRDSGIIYCLSRNDCDAMAESLQRAGLLALSYHAGLSDGNREYVQTKWINQDGCQVICA 921
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ I+
Sbjct: 922 TIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCILFYSYADVHRIKRII 981
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
S ++ +SQ+ +T ++ MV +CE S CRR ++L FGE
Sbjct: 982 SMDREGDSQTKATH-------YNNLHSMVHFCENSMECRRIQLLAYFGE 1023
>gi|387791080|ref|YP_006256145.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379653913|gb|AFD06969.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 729
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 174/404 (43%), Positives = 248/404 (61%), Gaps = 23/404 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L L+ FG +F+ +Q + I ++LSG D F +MPTGGGKSMCYQ+PAL G +
Sbjct: 4 KKSLFDNLQNFFGFEKFKGEQEEIITSILSGNDTFVIMPTGGGKSMCYQLPALMSDGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ K+ +D+ SG+ +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGSTDSIAHFLNSSLNKTETAKVKQDVLSGET--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
+ + L+ I ++ VA+DEAHCIS WGHDFRP YRK+ + L ++PI+A
Sbjct: 122 SLSKQENIDFLRDID----ISFVAVDEAHCISEWGHDFRPEYRKIRQIIGQLGENIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+ ++L +QN V KSSFNRPNLFYE+R K + ++ +K+
Sbjct: 178 LTATATPKVQQDIQKNLQMQNSQVFKSSFNRPNLFYEIRPKK---NELKEIIKYIKSQNG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GI YHAGL+ R++ D ++ QV+VAT+AF
Sbjct: 235 KAGIIYCLSRKKVEEVAETLNVNGIKALPYHAGLDANTRATTQDKFLMEDVQVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRFVIHYDMPKSMEGYYQETGRAGRDGGEGNCIAFYDQKDIDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S RE ++ +++DY E S CRRK+IL FGE
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYAESSVCRRKQILHYFGE 388
>gi|20093292|ref|NP_619367.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
gi|19918649|gb|AAM07847.1| DNA helicase RecQ [Methanosarcina acetivorans C2A]
Length = 909
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 174/406 (42%), Positives = 256/406 (63%), Gaps = 32/406 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG+ FR Q + I+ VL +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI
Sbjct: 28 VLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVSPLI 87
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LM++QV GL+ GIA ++STQ+ + VK+ E+ L++LY+ PE P
Sbjct: 88 SLMKDQVDGLEANGIAAACMNSTQSAREIRDVKSAFLEN------RLKILYIAPERLMMP 141
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN---YLPDVPILALTA 201
G ++ LKK G ++L AIDEAHCIS WGHDFRP YRKL LR+ PDVP++ALTA
Sbjct: 142 GTITFLKK----GKISLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKTGFPDVPVIALTA 197
Query: 202 TAAPKVQKDVMESLCLQ-NPL--VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TA +V+KD++ L L +P + +SFNR NL+YEVR K D ++++ L +
Sbjct: 198 TATGRVRKDIIVQLGLDLDPEKGLYVASFNRSNLYYEVRPKK---DTFSEITDYLLRHRG 254
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R + L+ L+ G YHAGL+D RS + +I ++VAT+AF
Sbjct: 255 EAGIIYCQSRNNVETLTKKLNLAGFRALPYHAGLSDSERSRNQEMFIKDDVDIIVATIAF 314
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +++
Sbjct: 315 GMGIDKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQK- 373
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
T E+ S+ QMV YCEG+ CRR+ +LE FGE++
Sbjct: 374 --------TNEKEKDISLVQLRQMVAYCEGNKCRRQALLEYFGEEL 411
>gi|432093931|gb|ELK25783.1| Bloom syndrome protein [Myotis davidii]
Length = 1296
Score = 335 bits (858), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 179/405 (44%), Positives = 241/405 (59%), Gaps = 11/405 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 532 HTKE-MMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 590
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 591 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 650
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 651 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 710
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 711 TATANPRVQKDILTQLKILRPQVFTMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 770
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G+ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 771 SGIIYCLSRRECDTMADTLQKNGLPALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 830
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 831 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYYDVTRLKRLILMEK 890
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 891 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGE 928
>gi|119943986|ref|YP_941666.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
gi|119862590|gb|ABM02067.1| ATP-dependent DNA helicase RecQ [Psychromonas ingrahamii 37]
Length = 602
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 167/391 (42%), Positives = 244/391 (62%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ +FR+ Q I + GRD +MPTGGGKS+C+QIPAL KPGI V+SPLI+LM++
Sbjct: 17 FGYNEFREGQELIINQLCEGRDALVVMPTGGGKSLCFQIPALVKPGICFVISPLISLMKD 76
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A +L+S+ + Q + ++ D+ SG+ L+L+Y+ PE P F+S+L +
Sbjct: 77 QVDALRACGVAAAYLNSSLSYQQQNQVLNDMHSGQ--LKLVYMAPERLLRPDFLSRLDNL 134
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+NL AIDEAHCIS WGHDFRP Y L L+ PD+P++ALTATA Q+D++
Sbjct: 135 P----INLFAIDEAHCISQWGHDFRPEYALLGQLKQRFPDIPLVALTATADYATQQDILA 190
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L +PL+ SF+RPN+ Y + +Y+ L L + L + + I+YC R
Sbjct: 191 RLQFNDPLIAIHSFDRPNIEYLLIEKYRPL-----NQLANYLDEHKNESGIIYCTSRRRT 245
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+EL+ L G+S YHAG+ + R SV D +I + +VVATVAFGMGID+ +VR V
Sbjct: 246 EELAEKLRVKGLSVRCYHAGMMIEERQSVQDLFIKDKVDIVVATVAFGMGIDKPNVRFVV 305
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H+ IPK++E++YQE+GRAGRD LP++++L+Y D R+ +L KN T E+
Sbjct: 306 HYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADAGRVRSMLEKN---------TNEQQ 356
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + + MV + E CRR+ +L FGE
Sbjct: 357 QRIELHKLNTMVAFAEAQTCRRQVLLNYFGE 387
>gi|346225175|ref|ZP_08846317.1| putative ATP-dependent DNA helicase [Anaerophaga thermohalophila
DSM 12881]
Length = 726
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 179/397 (45%), Positives = 242/397 (60%), Gaps = 24/397 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG F+ Q D I+ VL G D F LMPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 11 LKKHFGFDTFKGNQEDIIKNVLDGNDTFVLMPTGGGKSLCYQLPALILDGTAIVISPLIA 70
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ + GIA FL+S+ T ++ ED+ SGK RLLYV PE
Sbjct: 71 LMKNQVDAMRNFSEDDGIA-HFLNSSLTKSAIQQVKEDVISGKT--RLLYVAPESLTKDE 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LK++ ++ A+DEAHCIS WGHDFRP YR++ + N + + P++ALTATA P
Sbjct: 128 NIQFLKQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGEAPLIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + + V KSSFNRPNLFYE+R K +A D+ VLK N I+YC
Sbjct: 184 KVQHDIQKNLGMLDANVFKSSFNRPNLFYEIRPKV---NATRDIIKVLKENPGKSVIIYC 240
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ L GI YHAG++ RS D ++ V+VAT+AFGMGID+
Sbjct: 241 LSRKKVEELAETLVVNGIKALPYHAGMDAATRSGNQDKFLMEDIDVIVATIAFGMGIDKP 300
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR+V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K Q
Sbjct: 301 DVRMVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSYKDIQKLE--------KFMQGK 352
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ K + + V Y E S CRRK +L FGE
Sbjct: 353 PLAEQEIGKQL--LLETVAYAESSLCRRKTLLHYFGE 387
>gi|386812206|ref|ZP_10099431.1| DNA helicase RecQ [planctomycete KSU-1]
gi|386404476|dbj|GAB62312.1| DNA helicase RecQ [planctomycete KSU-1]
Length = 714
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 250/403 (62%), Gaps = 28/403 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ K L+ +FG+ F Q D I+ VL+ RD F LMPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 1 MYKTLQKYFGYTSFYPLQEDIIKEVLAQRDAFVLMPTGGGKSLCYQLPALLFSGVTIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL-----RLLYVTPEL 140
PLIALM++QV GL GI F++S+ + Y ++D+ + SL ++LY+ PE
Sbjct: 61 PLIALMKDQVDGLLANGIPAIFINSSLS-------YSEIDAKRQSLLNNEIKILYIAPER 113
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
P F+ L+ + ++L AIDE+HCIS WGHDFRP YR+L L+ P VP++ALT
Sbjct: 114 LFMPEFLQFLQGLK----ISLFAIDESHCISEWGHDFRPEYRQLEILKEKFPKVPVMALT 169
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA P VQKD++ L L + + K+SFNR NL+Y+++ KD + Y + LK+
Sbjct: 170 ATATPAVQKDIILQLKLSDCRIFKASFNRKNLYYQIKPKD---NPYHQILHYLKSRKKDS 226
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC R T + L+ L A G YHAGL + R+ + +I +++VAT+AFGM
Sbjct: 227 GIIYCQSRKTVESLTTSLQAEGYRVLPYHAGLPAEVRTENQERFIHDDVEIIVATIAFGM 286
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD L S +L + D+ ++E+ + + +
Sbjct: 287 GIDKPDVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKFKIEYFIHQKIDE 346
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
N + + ++ + +YCEG+ CRRK +L+ FGE+
Sbjct: 347 NEKLIAYKQ---------LRHLTNYCEGNICRRKLLLDYFGEK 380
>gi|195396248|ref|XP_002056744.1| GJ10048 [Drosophila virilis]
gi|194143453|gb|EDW59856.1| GJ10048 [Drosophila virilis]
Length = 1324
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/404 (43%), Positives = 250/404 (61%), Gaps = 17/404 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 556 LMQALSFSFGLKSFRPNQLQVINAALLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 615
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I + +S QT+ IY DL+ P ++LLYVTPE ++++
Sbjct: 616 PLKSLIFDQVNKLASLDICAKSMSGEQTLDEVMTIYRDLECHPPLVKLLYVTPEKISSSA 675
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++ + ++ IDEAHC+S WGHDFRP Y+KL LR P+VP +ALTATA
Sbjct: 676 RFQDTLDQLSANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILRKRFPNVPSMALTATAT 735
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V++D+++ L L + SSFNR NL Y+V K LDD + S ++ T +
Sbjct: 736 PRVRQDILQQLNLTHCKWFLSSFNRSNLRYQVLPKKGASTLDD----IRSFIQTRAVTAS 791
Query: 262 -IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE++ + A GI AYHAGL D AR S DWI+++ +V+ AT+AFGM
Sbjct: 792 GIIYCLSRKECDEVAQKMCAVGIRAVAYHAGLTDAARESRQKDWITNKVRVICATIAFGM 851
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ ++
Sbjct: 852 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEIADCILYYNYSDMLRLKKMMDADR-- 909
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K I + ++V YCE + CRR + L+ FGE
Sbjct: 910 -----ALQYHVKKIHIDNLHRIVGYCENITDCRRAQQLDYFGEH 948
>gi|313205605|ref|YP_004044782.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|383484930|ref|YP_005393842.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|312444921|gb|ADQ81276.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer ATCC
11845 = DSM 15868]
gi|380459615|gb|AFD55299.1| ATP-dependent DNA helicase recq [Riemerella anatipestifer ATCC
11845 = DSM 15868]
Length = 734
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 24/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LAEELKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E+G+A SS Q+K +++ D++SG+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIK-QVFNDINSGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK+ + ++ VAIDEAHCIS WGHDFRP YR L + + + +VP++ALTA
Sbjct: 125 IKEDYLDFLKQAN----ISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + +V K SFNRPNLFYEVR K D ++ + N
Sbjct: 181 TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKV---DVEKEIVKFINKNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ----- 352
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+S S +E + +++V Y E S RR+ IL FGE+
Sbjct: 353 -KSVSEKEV----GLQLLNEVVGYAETSMSRRQYILYYFGEE 389
>gi|406901072|gb|EKD43834.1| hypothetical protein ACD_72C00100G0005 [uncultured bacterium]
Length = 619
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 250/399 (62%), Gaps = 22/399 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q + IQ ++ RD F LMPTGGGKS+CYQIPAL G+ +V+SPL
Sbjct: 6 QILKTKFGYESFRFNQEEIIQTIMQKRDAFVLMPTGGGKSLCYQIPALLFDGLTVVISPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPG 145
IALM++QV L+ GI +++S+ + +YE LD + ++LLYV+PE L
Sbjct: 66 IALMKDQVDALRLNGIKAAYMNSSMDSDEISDLYEQLD--RHEIKLLYVSPERLLGNNQQ 123
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L+ ++ ++L AIDEAHCISSWGHDFRP YR LSSL+ PDVP +ALTATA
Sbjct: 124 FLVYLRDLN----ISLFAIDEAHCISSWGHDFRPEYRMLSSLKKDFPDVPTIALTATADN 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L+NP + SSFNRPN+ Y V K + Y ++ S LK + I+Y
Sbjct: 180 LTRDDILNKLKLKNPSIFVSSFNRPNINYSVEPKRKM---YEEIVSYLKKHRSDSGIIYV 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R + ++++ L G S YHAGLN++ R + +I + +++VAT+AFGMGI++
Sbjct: 237 LSRNSAEKMAEKLKKDGFSTKPYHAGLNNEKRQRHQEMFIKDQVKIMVATIAFGMGINKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY-GMDDRRRMEFILSKNQSKNSQS 384
+VR V H ++PK++E++YQE+GRAGRD L S+++LYY G D + F + +N + ++
Sbjct: 297 NVRFVIHADLPKNIESYYQETGRAGRDGLKSEAILYYSGGDVVKLKRFAMVENNPEQTRV 356
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ SQM CE + CRR+ IL FGE+
Sbjct: 357 M----------LHKLSQMATLCEANACRRRAILNYFGEE 385
>gi|357155794|ref|XP_003577240.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Brachypodium
distachyon]
Length = 599
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 244/403 (60%), Gaps = 30/403 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A A L+ RDCF LMPTGGGKS+CYQ+PA PG+ +VV PL++L+++
Sbjct: 193 FGNKSFRPLQYEACSAALNNRDCFILMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIQD 252
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
QV+ L K GI FL+S QT + + ++L +G PS +LLYVTPE + FM L+
Sbjct: 253 QVVALTFKFGIQASFLNSQQTSSQASVVMQELRNGTPSFKLLYVTPERMVGNYSFMEILR 312
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V+KD+
Sbjct: 313 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRALGCLKQNFPRVPIMALTATATEAVRKDI 372
Query: 212 MESLCLQNPLVLKSSFNRPNLFY---------EVRYKDLLDDAYADLCSVLKANGDTCAI 262
+ +L + N LVLK SF+R NL Y +++ +LL + + ++ I
Sbjct: 373 LSTLRVPNALVLKRSFDRLNLNYMVIGKTKTPQMQLGELLKERFMNM----------SGI 422
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHAGL + R+SV + W +V+ AT+AFGMG
Sbjct: 423 VYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRTSVQEKWHRGEVKVICATIAFGMG 482
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD LP+ ++ Y D R+ +L +
Sbjct: 483 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDDLPAHCVVLYQKKDFSRIVCMLRNGDNFK 542
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
S++F +KK M YCE + CRR+ +L FGEQ
Sbjct: 543 SETFKVAMDQAKK-------MQAYCELKTECRRQTLLAHFGEQ 578
>gi|443322394|ref|ZP_21051417.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
gi|442787869|gb|ELR97579.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 73106]
Length = 701
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 250/398 (62%), Gaps = 16/398 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FGH FR Q I VL+ RD +MPTGGGKS+CYQ+PAL KPG+ LVVSPLI+
Sbjct: 8 LKRFFGHDVFRPLQEQIIAEVLNNRDLLVIMPTGGGKSLCYQLPALLKPGLTLVVSPLIS 67
Query: 90 LMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV LK++GI FL SS + +++++ E L +++LLYV PE + GF
Sbjct: 68 LMQDQVNALKDRGIGATFLNSSLNSQEIQSRSREILQG---NIKLLYVAPERLLSEGFSV 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +I ++ +AIDEAHC+S WG DFRP YR++ LR P VP++ALTATA +V+
Sbjct: 125 FLTQIQQDVGISALAIDEAHCVSEWGQDFRPEYRQIKGLRQRYPQVPMVALTATATTRVR 184
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+++ L L P V SFNRPNL+YEV KD D Y L +K + IVYCL R
Sbjct: 185 QDIIQQLGLIKPGVYVDSFNRPNLYYEVVSKDKRD--YPQLLKYIKLQQGS-GIVYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E+++ L A GIS YH G++D RS + +I +V+VAT+AFGMGI++ DVR
Sbjct: 242 RRVEEVASRLQADGISSLPYHGGMDDTVRSVYQNRFIGDDVRVMVATIAFGMGINKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++P+++E++YQE GRAGRD + +L++ D R +++++ + ++Q + +
Sbjct: 302 FVFHYDLPRNLESYYQEVGRAGRDGERAICVLFFSRGDIRTIDYLIKQKSDPSAQRLARQ 361
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
SS MVDY E + CRRK L FGE+ G
Sbjct: 362 GLSS---------MVDYAESTVCRRKIQLSYFGERFSG 390
>gi|255037353|ref|YP_003087974.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
gi|254950109|gb|ACT94809.1| ATP-dependent DNA helicase RecQ [Dyadobacter fermentans DSM 18053]
Length = 737
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 245/393 (62%), Gaps = 19/393 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG++QFR Q IQ +L G++ F +MPTG GKS+CYQ+PAL G+ +V+SPLIA
Sbjct: 17 LKEIFGYSQFRGDQEVIIQNILLGKNTFVIMPTGAGKSLCYQLPALVSDGLTIVISPLIA 76
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST T T++ D G +L+LLY+ PE +
Sbjct: 77 LMKNQVDQLTAFGINAQFLNSTLTKAEMTRVKTDALDG--TLKLLYIAPESLTKEDNLDF 134
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK++ ++ VAIDEAHCIS WGHDFRP YR++ + + ++PI+ALTATA PKVQ+
Sbjct: 135 LKRVK----ISFVAIDEAHCISEWGHDFRPEYRRIHGIIENIGNLPIIALTATATPKVQQ 190
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ ++L ++ KSSFNR NL+YE+R K D L ++ N IVYCL R
Sbjct: 191 DIRKNLQMEEAETFKSSFNRKNLYYEIRPKK---DVKKQLIRYIRNNKGKSGIVYCLSRK 247
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T +E++ L+ + YHAGL+ R + D +++ V+VAT+AFGMGID+ DVR
Sbjct: 248 TVEEVAELLNVNDVRALPYHAGLDANTRMANQDAFLNEECDVIVATIAFGMGIDKPDVRF 307
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+++PKS+E +YQE+GRAGRD L L++Y DD +++E K ++ + E
Sbjct: 308 VIHYDVPKSLEGYYQETGRAGRDGLEGNCLMFYSYDDIQKLE--------KFNKDKTVTE 359
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R + + + ++MV Y CRR+++L FGE
Sbjct: 360 RDNARHL--LNEMVAYSTLGVCRRRQLLSYFGE 390
>gi|407452782|ref|YP_006724507.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
gi|403313766|gb|AFR36607.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-1]
Length = 734
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 24/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LAEELKKYFGFSTFKGQQEAIISTLLGGKDVFVLMPTGGGKSLCYQLPALISEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E+G+A SS Q+K +++ D++SG+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIK-QVFSDINSGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK+ + ++ VAIDEAHCIS WGHDFRP YR L + + + +VP++ALTA
Sbjct: 125 IKEDYLDFLKQAN----ISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + +V K SFNRPNLFYEVR K D ++ + N
Sbjct: 181 TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKV---DVEKEIVKFINKNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ----- 352
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+S S +E + +++V Y E S RR+ IL FGE+
Sbjct: 353 -KSVSEKEV----GLQLLNEVVGYAETSMSRRQYILYYFGEE 389
>gi|345315332|ref|XP_001515695.2| PREDICTED: Bloom syndrome protein [Ornithorhynchus anatinus]
Length = 865
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 179/406 (44%), Positives = 243/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 71 HSKE-MMKIFHKKFGLHHFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISPGV 129
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 130 SIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEK 189
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 190 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNVLRQKFPSVPVMAL 249
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y+V K A+ L + K +
Sbjct: 250 TATANPRVQKDILTQLKILKPQVFSMSFNRHNLKYDVLPKKPKKVAFDCLSWIRKHHPYD 309
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 310 SGIIYCLSRRECDTMALTLRKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 369
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 370 GMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYSYHDVIRLKRLILMEK 429
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
NS + T ++ MV YCE + CRR ++L FGE
Sbjct: 430 DGNSHTRQTH-------FNNLYSMVHYCENIAECRRIQLLSYFGEN 468
>gi|386320424|ref|YP_006016586.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|416111385|ref|ZP_11592598.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|442315223|ref|YP_007356526.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
gi|315022665|gb|EFT35690.1| ATP-dependent DNA helicase RecQ [Riemerella anatipestifer RA-YM]
gi|325334967|gb|ADZ11241.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-GD]
gi|441484146|gb|AGC40832.1| Superfamily II DNA helicase [Riemerella anatipestifer RA-CH-2]
Length = 734
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 247/402 (61%), Gaps = 24/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LAEELKKYFGFSTFKGQQEAIISTLLGGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E+G+A SS Q+K +++ D++SG+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQIK-QVFSDINSGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ LK+ + ++ VAIDEAHCIS WGHDFRP YR L + + + +VP++ALTA
Sbjct: 125 IKEDYLDFLKQAN----ISFVAIDEAHCISEWGHDFRPEYRNLKGIIDKIANVPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + +V K SFNRPNLFYEVR K D ++ + N
Sbjct: 181 TATPKVQDDIQKTLGMSDAVVFKESFNRPNLFYEVRPKV---DVEKEIVKFINKNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMG
Sbjct: 238 IVYCLSRKKVEEFAQTLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 298 IDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ----- 352
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+S S +E + +++V Y E S RR+ IL FGE+
Sbjct: 353 -KSVSEKEV----GLQLLNEVVGYAETSMSRRQYILYYFGEE 389
>gi|126661004|ref|ZP_01732090.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
gi|126617703|gb|EAZ88486.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. CCY0110]
Length = 710
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 246/401 (61%), Gaps = 14/401 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L++ FG+ QFR Q I L+ +D +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 8 LENALKYFFGYDQFRSGQKQIINEALNDKDLLIIMPTGGGKSLCFQLPALLKSGVCVVVS 67
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L + GI FL+ST + + GK ++L+YV PE
Sbjct: 68 PLIALMQDQVDALLDNGIGATFLNSTLNREELQSRENAILKGK--IKLVYVAPERLLNDN 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F++ L + + L+ AIDEAHC+S+WGHDFRP YR+L LR P VP+ ALTATA
Sbjct: 126 FLNFLDFLKQKVGLSAFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPKVPMFALTATATK 185
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V+ D++E L LQNP V +SF+RPNL+YEV+ K +Y L + ++ N + I+YC
Sbjct: 186 RVRADIIEQLGLQNPTVHVASFDRPNLYYEVQQKS--RRSYTQLLNYIR-NQEGSGIIYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R + ++ L GI YHAG+ D R++ +I +++VAT+AFGMGI++
Sbjct: 243 LSRKNVETIALRLQQDGIDALPYHAGMYDDERATNQTRFIRDDVRIIVATIAFGMGINKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++P+++E++YQESGRAGRD P+ L++ D +R+E+++ + + Q
Sbjct: 303 DVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQRV 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
++ Q+VDY EG+ CRR +L FG+Q G
Sbjct: 363 GRQQ---------LRQVVDYAEGTECRRSIVLRYFGQQYKG 394
>gi|345486372|ref|XP_001605988.2| PREDICTED: Bloom syndrome protein homolog [Nasonia vitripennis]
Length = 1211
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 172/405 (42%), Positives = 241/405 (59%), Gaps = 12/405 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L + + FG QFR QL AI AV+ G DCF LMPTGGGKS+CYQ+PAL PG+
Sbjct: 511 HSQEML-HVFKTRFGLHQFRPNQLPAINAVILGHDCFVLMPTGGGKSLCYQLPALLAPGV 569
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +Q L I+ +L+ + + +Y L + + +L+LLYVTPE
Sbjct: 570 TIVISPLRSLIVDQTQKLLSLDISALYLTGDLSNEQMNGVYRKLYNTESNLKLLYVTPEK 629
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++ + F L +++ G L IDE HC+S WGHDFRP Y+KLS LR P VPI+AL
Sbjct: 630 ISKSTKFCDSLLRLYRDGKLARFVIDEVHCVSQWGHDFRPDYKKLSMLRERFPGVPIIAL 689
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA +V+ D++ L LQ+P SSFNRPNL Y V + Y + ++K +
Sbjct: 690 TATATQRVRSDILHQLHLQSPKWFISSFNRPNLRYTVTLRKS-KYPYQLVLDLIKTKFPN 748
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C I+YC R CD L+ L GI +YHAGL+DK R+ W+S + +V+ AT+AF
Sbjct: 749 DCGIIYCFSRNDCDNLAEALKKEGIQALSYHAGLDDKVRTDRQIQWVSEKVKVICATIAF 808
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H +PKS+E +YQESGRAGRD P+ +L Y D R ++ N+
Sbjct: 809 GMGIDKPNVRYVIHATMPKSIEGYYQESGRAGRDGEPADCILLYNYSDMHRYRTMMESNE 868
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N ++ T + + ++V +CE + CRR L FGE
Sbjct: 869 YANKEALKTH-------LDNLFKIVHFCENMADCRRALQLNYFGE 906
>gi|392969325|ref|ZP_10334740.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
gi|387841519|emb|CCH56798.1| ATP-dependent DNA helicase RecQ [Fibrisoma limi BUZ 3]
Length = 736
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 249/398 (62%), Gaps = 19/398 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ FG++QFR Q I ++L+GR+ F +MPTG GKS+CYQ+PA+ G +V+
Sbjct: 11 TLKERLKEIFGYSQFRGDQEAIIHSILAGRNTFVIMPTGAGKSLCYQLPAIVSDGTAIVI 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM+NQV L GI +FL+ST + K+ +D SG SL+LLY+ PE
Sbjct: 71 SPLIALMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLSG--SLKLLYIAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ LKK + ++ VAIDEAHCIS WGHDFRP YRK+ + + + ++P++ALTATA
Sbjct: 129 ENLDFLKKAN----ISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D+ ++L +++ + KSSFNR NL+YE++ K DA L +K N IVY
Sbjct: 185 PKVQQDIQKNLQMEDANLYKSSFNRKNLYYEIKPKI---DAKKQLIKYVKQNKGKSGIVY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R T ++++ L+ I YHAGL+ R + D +++ V+VAT+AFGMGID+
Sbjct: 242 CLSRKTVEDIAELLNVNDIKALPYHAGLDPLTRMNNQDAFLNEEVDVIVATIAFGMGIDK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H++ PKS+E +YQE+GRAGRD L +++Y DD ++E K ++
Sbjct: 302 PDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYSYDDIVKLE--------KFNKD 353
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + K + ++MV Y CRR+++L FGE
Sbjct: 354 KPVTERDNAKHL--LTEMVSYANLGVCRRRQLLSYFGE 389
>gi|338212508|ref|YP_004656563.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
gi|336306329|gb|AEI49431.1| ATP-dependent DNA helicase RecQ [Runella slithyformis DSM 19594]
Length = 746
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 249/401 (62%), Gaps = 19/401 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+ L + L+ FG++QFR +Q I +++ G + F +MPTG GKS+CYQ+PA+ GI +
Sbjct: 9 QHTLKERLKEIFGYSQFRGEQEAIINSIMGGNNTFVIMPTGAGKSLCYQLPAITTEGIAI 68
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L GI +FL+ST K+ +D G +L+LLY+ PE
Sbjct: 69 VISPLIALMKNQVDQLNAFGINAQFLNSTLNKAEINKVKKDALDG--TLKLLYIAPESLT 126
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTA 201
+ L+ R ++ VA+DEAHCIS WGHDFRP YR++ + N PD+P++ALTA
Sbjct: 127 KEENLDFLQ----RANISFVAVDEAHCISEWGHDFRPEYRRIRGIIDNINPDLPLIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L ++ + K+SFNR NL+YE+R K L D L +K N
Sbjct: 183 TATPKVQQDIVKNLRMEEAAMFKTSFNRKNLYYEIRPK--LADVNKQLIKYIKNNKGKSG 240
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R T +E++ L+ + YHAGL+ R D +++ V+VAT+AFGMG
Sbjct: 241 IIYCLSRKTVEEVANLLNVNDVKALPYHAGLDSSTRMHNQDAFLNEEADVIVATIAFGMG 300
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++ PKS+E +YQE+GRAGRD L +++Y +DD +++E K
Sbjct: 301 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCVMFYCIDDIQKLE--------KF 352
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ S ER + + + ++MV Y CRR+++L FGE
Sbjct: 353 NKDKSVTERDNARHL--LNEMVAYANLGACRRRQLLSYFGE 391
>gi|313223438|emb|CBY40419.1| unnamed protein product [Oikopleura dioica]
Length = 636
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 168/419 (40%), Positives = 253/419 (60%), Gaps = 14/419 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDK-QLDAIQAV-LSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
+E + LR FGH+ FR + Q +A++ + L RD F +PTGGGKS+ YQ+PAL PGI
Sbjct: 87 EEDIYAALREKFGHSGFRSQIQEEAVKELCLGDRDAFICLPTGGGKSLIYQLPALLYPGI 146
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLIAL+++Q+ L +K I E ++S + + + I +DL SG P R+LYVTPE
Sbjct: 147 SIVISPLIALIQDQLKALLDKDIRAESINSKLSTEERRAIMDDLYSGVPKTRILYVTPEQ 206
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
T F+ + ++SR L++LVAIDEAHC+S WGHDFRP Y KL LR +P+ +A T
Sbjct: 207 VQTQRFIKLARWMNSRCLIHLVAIDEAHCVSQWGHDFRPDYLKLGLLREIIPNARFVACT 266
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK------ 254
ATA K+++DV L ++ V ++ R NL+Y+V+ KD+L + + L + +
Sbjct: 267 ATATKKIEEDVCRILKMKKCAVFRTGITRENLYYDVKMKDILPNPHKHLANFARECIGKQ 326
Query: 255 ---ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+ + IVYC R C+E++ L+ G+ YHAGL + R+ V +DW R V
Sbjct: 327 RPDGSYEGAGIVYCFRRDDCEEMAVSLTRLGVEAEPYHAGLKPETRTRVQEDWTEGRVPV 386
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
+ AT++FGMG+D+++VR V H+ +PKS+ + QESGRAGRD PSK LYY +++R +
Sbjct: 387 ICATISFGMGVDKENVRFVAHWTLPKSLAGYLQESGRAGRDNKPSKCRLYYSREEQRSLI 446
Query: 372 FILSKNQSKNSQSFSTRERSSKK---SISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
FI+ K + E++ KK + F + YCE + CR + + + FGE C
Sbjct: 447 FIIKKPLMWKKKDIGNAEQNKKKVMIQLRQFESVTKYCEATDCRHRTMAKFFGENTDDC 505
>gi|21227319|ref|NP_633241.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
gi|20905673|gb|AAM30913.1| ATP-dependent DNA helicase [Methanosarcina mazei Go1]
Length = 896
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 254/408 (62%), Gaps = 36/408 (8%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG+ FR Q + I+ VL +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI
Sbjct: 28 VLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVSPLI 87
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LM++QV GL+ GIA ++STQ+ + VK E+ L++LY+ PE P
Sbjct: 88 SLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLEN------RLKVLYIAPERLMMP 141
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR---NYLPDVPILALTA 201
G + LKK G ++L AIDEAHCIS WGHDFRP YRKL LR N PDVP++ALTA
Sbjct: 142 GTFAFLKK----GKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTA 197
Query: 202 TAAPKVQKDVMESLCL-----QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
TA +V+KD++ L L + P V +SFNR NL+YEVR K D ++++ L +
Sbjct: 198 TATERVKKDIVSQLGLNIDPEKGPYV--ASFNRSNLYYEVRPKK---DTFSEITDYLLRH 252
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R + L+ L+ G YHAGL+D RS + +I ++VAT+
Sbjct: 253 RGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATI 312
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +++
Sbjct: 313 AFGMGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQ 372
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
T E+ S+ QMV YCEG+ CRR+ ++E FGE++
Sbjct: 373 ---------KTNEKEKDISLVQLRQMVAYCEGNKCRRQTLMEYFGEEL 411
>gi|427733629|ref|YP_007053173.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
gi|427368670|gb|AFY52626.1| ATP-dependent DNA helicase RecQ [Rivularia sp. PCC 7116]
Length = 719
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 170/395 (43%), Positives = 251/395 (63%), Gaps = 16/395 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG+ FR Q + I L RD +MPTGGGKS+C+Q+PAL K G+ +VVSPLIA
Sbjct: 11 LKHHFGYDSFRSPQREIIVEALENRDLLVIMPTGGGKSLCFQLPALMKEGLTVVVSPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED-LDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV GL++ GI FL+S+ + K ++ E + +GK ++LLYV PE + F+
Sbjct: 71 LMQDQVDGLRKNGIPATFLNSSVSPH-KVRMREQAILAGK--VKLLYVAPERLLSERFLP 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +H + ++ AIDEAHC+S WGHDFRP YR++ SLR P+VPI ALTATA +V+
Sbjct: 128 LLDLVHHQIGISAFAIDEAHCVSEWGHDFRPEYRQMISLRQRYPNVPIWALTATATERVR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+++ L L+ P V +SFNR NL+YEVR K ++Y +L +++ N + I+YCL R
Sbjct: 188 LDIIKQLGLKQPNVHIASFNRQNLYYEVRPKK--KNSYVELLGLIQDN-EGSGIIYCLTR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+EL+ L IS YHAGL+D RS +I +++VAT+AFGMGI++ DVR
Sbjct: 245 KKVEELAFKLQHDKISALPYHAGLSDVERSENQTKFIRDDARIIVATIAFGMGINKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H++I +++E++YQESGRAGRD S+ +L+ D + +E+++ + ++ Q +
Sbjct: 305 FVVHYDISRNLESYYQESGRAGRDGESSRCMLFLSYSDVKTIEWLIDQKSNEQEQMIAKH 364
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ QM+DY EG+ CRR L FGE+
Sbjct: 365 Q---------LRQMIDYAEGTDCRRAIQLSYFGER 390
>gi|452209801|ref|YP_007489915.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
gi|452099703|gb|AGF96643.1| ATP-dependent DNA helicase RecQ [Methanosarcina mazei Tuc01]
Length = 876
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 254/408 (62%), Gaps = 36/408 (8%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG+ FR Q + I+ VL +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI
Sbjct: 8 VLRQYFGYTAFRPLQEEIIRDVLDRKDVFVLMPTGGGKSICYQLPSLLLDGVTVVVSPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQ----VKTKIYEDLDSGKPSLRLLYVTPELTATP 144
+LM++QV GL+ GIA ++STQ+ + VK E+ L++LY+ PE P
Sbjct: 68 SLMKDQVDGLEANGIAAACMNSTQSPRENRDVKNAFLEN------RLKVLYIAPERLMMP 121
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR---NYLPDVPILALTA 201
G + LKK G ++L AIDEAHCIS WGHDFRP YRKL LR N PDVP++ALTA
Sbjct: 122 GTFAFLKK----GKVSLFAIDEAHCISEWGHDFRPEYRKLKLLRDPKNGFPDVPVIALTA 177
Query: 202 TAAPKVQKDVMESLCL-----QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
TA +V+KD++ L L + P V +SFNR NL+YEVR K D ++++ L +
Sbjct: 178 TATERVKKDIVSQLGLNIDPEKGPYV--ASFNRSNLYYEVRPKK---DTFSEITDYLLRH 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R + L+ L+ G YHAGL+D RS + +I ++VAT+
Sbjct: 233 RGEAGIIYCQSRNNVETLTRKLNLAGFRALPYHAGLSDSERSRNQEMFIRDDVDIIVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H+++P+++E++YQE+GR GRD P + +L++ DR ++E+ +++
Sbjct: 293 AFGMGINKSNVRFVIHYDLPRNLESYYQETGRGGRDGSPCECILFFSRGDRFKIEYFIAQ 352
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
T E+ S+ QMV YCEG+ CRR+ ++E FGE++
Sbjct: 353 ---------KTNEKEKDISLVQLRQMVAYCEGNKCRRQTLMEYFGEEL 391
>gi|124004539|ref|ZP_01689384.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
gi|123990111|gb|EAY29625.1| ATP-dependent DNA helicase RecQ [Microscilla marina ATCC 23134]
Length = 728
Score = 334 bits (856), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 168/395 (42%), Positives = 247/395 (62%), Gaps = 19/395 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ QFR Q + I+++L ++ F +MPTG GKS+CYQ+PA+ PG +V+SPLIA
Sbjct: 13 LKEVFGYGQFRGAQQEIIKSILGEKNTFVIMPTGAGKSLCYQLPAIVSPGSAIVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST T T++ +D+ +G+ ++LLYV PE +
Sbjct: 73 LMKNQVDQLNALGINAQFLNSTLTKGEITRVKKDVLNGE--VKLLYVAPESLTKESNVDF 130
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LKK ++ VAIDEAHCIS WGHDFRP YRK+ + + L ++PI+ALTATA PKVQ+
Sbjct: 131 LKKAQ----ISFVAIDEAHCISEWGHDFRPEYRKIRQIIDNLGNLPIIALTATATPKVQQ 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ +L +++ V KSSFNRPNL+YEVR K + L LK I+YCL R
Sbjct: 187 DIQRNLQMEDASVFKSSFNRPNLYYEVRPKIHVK---KQLIKYLKNKKGESGIIYCLSRK 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E+ +L I YHAGL+ R D +++ ++VAT+AFGMGID+ DVR
Sbjct: 244 KVEEIYEFLKVNDIKALPYHAGLDSSVRMRNQDAFLNEDADIIVATIAFGMGIDKPDVRC 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H++ PKS+E +YQE+GRAGRD L + +++Y +D +++E K ++ E
Sbjct: 304 VIHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPNDIQKLE--------KFNKDKPVTE 355
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
R + + + +M+DY CRR+++L FGE++
Sbjct: 356 RDNARHL--LQEMMDYATSGVCRRRQLLHYFGEKM 388
>gi|328697674|ref|XP_001952385.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 178/412 (43%), Positives = 244/412 (59%), Gaps = 13/412 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
++ N P H +E L + R FG FR QL+ I A L G DCF LMPTGGGKS+CYQ+P
Sbjct: 432 SKTNYP-HSRE-LFTVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLP 489
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G+ LV+SPL +L+ +Q LK I L + + I+ L +P L++
Sbjct: 490 AVISKGVTLVISPLKSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCMSEPGLKM 549
Query: 134 LYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192
LYVTPE + A+ L +H RG L + IDEAHC+S WGHDFRP Y++L R P
Sbjct: 550 LYVTPEKIAASMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYP 609
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV 252
DVPI+ALTATA +V++DV+ L + + SSFNRPNL Y+V K A A++ ++
Sbjct: 610 DVPIMALTATATTRVREDVLHQLQISGTKLFLSSFNRPNLLYKVVPKKG-KSAMAEIANL 668
Query: 253 LKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+K + IVYCL R CD + Y+ GI +YHAGL+D R+ V WI+++ +
Sbjct: 669 IKEKYKNQSGIVYCLSRKECDNTATYMCNEGIKAISYHAGLSDPKRNDVQMKWITNKVNL 728
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
V AT+AFGMGID+ DVR V H+++PKS+E +YQESGRAGRD S LYY D R+
Sbjct: 729 VCATIAFGMGIDKPDVRYVFHYSLPKSIEGYYQESGRAGRDGKTSHCFLYYSYQDMHRIR 788
Query: 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
++ + S N + S K + + ++V YCE + CRR L FGE
Sbjct: 789 KLIELDDSGNHE-------SKKVHMQNLFRIVSYCENKADCRRTLQLNYFGE 833
>gi|348551294|ref|XP_003461465.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Cavia porcellus]
Length = 989
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 178/425 (41%), Positives = 254/425 (59%), Gaps = 12/425 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THPSTPSDPERRVRSTLKKVFGFDSFKTPLQERATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +V+SPL+AL+++QV L + LSS ++Q K ++ DL+ KP
Sbjct: 63 LPALLAKGITIVISPLLALIQDQVDHLLALKVQVSSLSSKTSVQEKKELLSDLEREKPQT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASTSFQPILSSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA--- 247
P LALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y
Sbjct: 183 VHAPCLALTATATPQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELISDPYGNLR 242
Query: 248 DLC-SVLKANGDT----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
D C L D C IVYC R C++L+ LS+ G++ AYHAGL R+ V +
Sbjct: 243 DFCRKALGQKTDKMLSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASDRTQVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
DR ++ F++ K +K + + K ++ F +V +CE GCR I + FG+
Sbjct: 363 SRIDRDQVSFLIRKEVAKLQEKRGNKS-FDKATLLAFDALVTFCEAQGCRHAAIAKYFGD 421
Query: 423 QVLGC 427
C
Sbjct: 422 APPAC 426
>gi|428771662|ref|YP_007163452.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
gi|428685941|gb|AFZ55408.1| ATP-dependent DNA helicase RecQ [Cyanobacterium aponinum PCC 10605]
Length = 707
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 251/403 (62%), Gaps = 16/403 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L + L+ +FG+ FR+ Q + IQ L+ RD +MPTGGGKS+C+Q+PAL K G+ +V+
Sbjct: 3 SLRQSLKKYFGYDSFREGQEEIIQNALNNRDLLIIMPTGGGKSLCFQLPALLKKGVTIVI 62
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLI+LM++QV+ L + GI F++ST Q + + SGK ++LLY+ PE +
Sbjct: 63 SPLISLMQDQVMSLHDNGIGATFINSTLDFQEIKHREQLILSGK--IKLLYLAPERLISE 120
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F S L + + AIDEAHCIS WGHDFR YR+L LR P +PI ALTATA
Sbjct: 121 KFQSFLNTVAKTNAIASFAIDEAHCISEWGHDFRLEYRQLRQLRQRFPQIPITALTATAT 180
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD-DAYADLCSVLKANGDTCAIV 263
P+VQ+D+++ L L+NP++ + SFNRPNL+YEVR ++ + L + L+ +G I+
Sbjct: 181 PRVQQDIIQQLRLRNPIIRRFSFNRPNLYYEVRPREKRNYHQILQLINSLEGSG----II 236
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T ++L+ L IS YH GL D+ RS D +I +++VATVAFGMGI+
Sbjct: 237 YCLARKTTEDLAYRLRQDNISALPYHGGLTDEMRSHHQDCFIRDDARIMVATVAFGMGIN 296
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++P+++E++YQESGRAGRD P+K +L Y D ++ + + + ++ N Q
Sbjct: 297 KPDVRFVIHHDLPRNIESYYQESGRAGRDGEPAKCILLYNPSDEYKINYFIKQKENINEQ 356
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
K++ ++ +Y E + CRR L FGE+ G
Sbjct: 357 ---------KQAREQLKKVQEYAETNYCRRIVQLGYFGEKYKG 390
>gi|91204323|emb|CAJ71976.1| strongly similar to ATP-dependent DNA helicase [Candidatus Kuenenia
stuttgartiensis]
Length = 772
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 248/401 (61%), Gaps = 18/401 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ + L+ +FG+++F Q D I+ VL +D F LMPTGGGKS+CYQ+PAL GI +
Sbjct: 56 KDRIYSALQKYFGYSKFYPLQEDIIRWVLEQKDLFVLMPTGGGKSLCYQLPALLFDGITV 115
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM++QV GL E GI+ F++S+ + DL GK +++LY+ PE A
Sbjct: 116 VISPLIALMKDQVDGLTENGISATFINSSVHAREVAARKRDLLEGK--IKILYIAPERLA 173
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ L+++ ++L AIDE+HCIS WGHDFRP YR+L LR P P +ALTAT
Sbjct: 174 MREFLQFLQELK----VSLFAIDESHCISEWGHDFRPEYRQLKMLREKFPKTPFMALTAT 229
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P VQKD++ L L + V +SFNR NLFY++ KD + Y + VLK I
Sbjct: 230 ATPSVQKDIVTQLKLTDYKVFNASFNRKNLFYQIIPKD---NPYHQILCVLKERKKESGI 286
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC R T + L+ L G YHAGL+ + R+ + +I +++VAT+AFGMGI
Sbjct: 287 IYCQGRKTVESLAGSLQGEGYRALPYHAGLSAEMRTENQERFIREDIEIIVATIAFGMGI 346
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+++PKS+E +YQE+GRAGRD L S +L + D+ ++E+ + + + +N
Sbjct: 347 DKPNVRYVIHYDLPKSIEGYYQETGRAGRDGLKSDCILLFSYADKIKIEYFIHQKEDENE 406
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + + +V YCEG+ CRRK +L+ FGE+
Sbjct: 407 K---------QAAYQQLKALVSYCEGNVCRRKILLDYFGEK 438
>gi|118579582|ref|YP_900832.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
gi|118502292|gb|ABK98774.1| ATP-dependent DNA helicase RecQ [Pelobacter propionicus DSM 2379]
Length = 714
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 245/400 (61%), Gaps = 18/400 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L L+ FG+ FR Q + IQ V++G D F +MPTGGGKS+CYQIPAL + G+ +V
Sbjct: 3 DSLDHTLKSVFGYGSFRPPQREVIQRVVAGEDVFLVMPTGGGKSLCYQIPALHREGVAIV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLI+LM++QV GL + G+ +S+ T + + L G+ L LLYV PE
Sbjct: 63 VSPLISLMKDQVDGLVDAGVRAACYNSSLTAEESRAVSRQLAQGE--LDLLYVAPERLLL 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L + L L AIDEAHCIS WGHDFRP Y KL LR P VPI+A+TATA
Sbjct: 121 PDFLERLGGLK----LALFAIDEAHCISQWGHDFRPDYVKLGRLRELFPSVPIVAMTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P+ ++D++ L ++ + + F+RPN+ Y V K L S LK GD IV
Sbjct: 177 DPETRRDIIRQLGIERATLFVAGFDRPNITYAVIPKQ---KPVNQLLSFLKGRGDESGIV 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
Y L R ++++ L G AAYHAGL D+ RS V D + +VVVATVAFGMGID
Sbjct: 234 YALSRKRVEQVTERLQQAGFDAAAYHAGLPDRERSRVQDAFRRDDLRVVVATVAFGMGID 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+++PKS+E++YQE+GRAGRD LPS++L+ +GM D + +++ +NS
Sbjct: 294 KPNVRFVVHYDLPKSVESYYQETGRAGRDGLPSQALMLFGMGD-----VMTARSLIENSD 348
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ ER + + + MV Y E CRR+ +L FGEQ
Sbjct: 349 NA---ER-VRIELQKLNAMVSYAEALTCRRRALLAYFGEQ 384
>gi|390357198|ref|XP_781064.3| PREDICTED: uncharacterized protein LOC575579 [Strongylocentrotus
purpuratus]
Length = 1391
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 250/407 (61%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG QFR+ QL+AI A L G DCF LMPTGGGKS+ YQ+P + G+
Sbjct: 765 HSRE-LHKVFRKTFGLHQFRENQLEAINAALLGEDCFILMPTGGGKSLTYQLPGVLTKGV 823
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+++QV L I LS IY L P +++LYVTPE
Sbjct: 824 TIVISPLKSLIQDQVQRLVSLEIQETHLSGEMAGAAADGIYRQLCMRDPVVKMLYVTPEK 883
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ +S ++ +++RGLL+ IDEAHC+S WGHDFRP Y++L LR P VP++AL
Sbjct: 884 ISASQKLLSTMEHLYTRGLLSRFVIDEAHCVSQWGHDFRPDYKRLCKLREKFPGVPMMAL 943
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD---LLDDAYADLCSVLKAN 256
TATA P+V+ D++ +L ++ P VL SSF+R NL + V K ++++ + S K
Sbjct: 944 TATATPRVKTDILHALKMKKPQVLTSSFDRSNLMFRVEKKQPSKMIENITKLINSQFKGK 1003
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C++++ LS GI + YHAG +DK RS+V WI+ + +VV AT+
Sbjct: 1004 ---SGIVYCLSRNECEKVADDLSNAGIKASPYHAGQSDKERSTVQTRWINGQYKVVCATI 1060
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD + +LY+ D R+ ++ K
Sbjct: 1061 AFGMGIDKADVRFVIHYSMPKSIEGYYQEAGRAGRDGGLAHCVLYFSYQDVTRLRRMIEK 1120
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N ++K + + MV YC+ + CRR +L FGE
Sbjct: 1121 N--------GDNYNATKVHVDNLYGMVQYCDNKADCRRVIMLSYFGE 1159
>gi|328725542|ref|XP_001947924.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1185
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 240/405 (59%), Gaps = 12/405 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L + R FG FR QL+ I A L G DCF LMPTGGGKS+CYQ+PA+ G+
Sbjct: 438 HSRE-LFTVFRSTFGLHNFRPNQLETINAALLGHDCFVLMPTGGGKSLCYQLPAVISKGV 496
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
LV+SPL +L+ +Q LK I L + + I+ L +P L++LYVTPE
Sbjct: 497 TLVISPLKSLVIDQTEKLKSLDIPTAHLLGNMKPEEENIIFTKLCMSEPGLKMLYVTPEK 556
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ L +H RG L + IDEAHC+S WGHDFRP Y++L R PDVPI+AL
Sbjct: 557 IAASMKLGQILNNLHCRGKLARLVIDEAHCVSHWGHDFRPDYKRLGEFRKKYPDVPIMAL 616
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GD 258
TATA +V++DV+ L + + SSFNRPNL Y+V K A A++ +++K +
Sbjct: 617 TATATTRVREDVLHQLQISGTKLFLSSFNRPNLLYKVVPKKG-KSAMAEIANLIKEKYKN 675
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R CD + Y+ GI +YHAGL+D R+ V WI+++ +V AT+AF
Sbjct: 676 QSGIVYCLSRKECDNTATYMCNEGIKAISYHAGLSDPKRNDVQMKWITNKVNLVCATIAF 735
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD S LYY D R+ ++ +
Sbjct: 736 GMGIDKPDVRYVFHYSLPKSIEGYYQESGRAGRDGKTSHCFLYYSYQDMHRIRKLIELDD 795
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
S N + S K + + ++V YCE + CRR L FGE
Sbjct: 796 SGNHE-------SKKVHMQNLFRIVSYCENKADCRRTLQLNYFGE 833
>gi|296203193|ref|XP_002748783.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 2 [Callithrix
jacchus]
Length = 990
Score = 333 bits (855), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 180/426 (42%), Positives = 253/426 (59%), Gaps = 12/426 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPEPRVRSTLKKVFGFDSFKTPLQESATMAVVKGNTDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL KP ++LY+
Sbjct: 69 AEGITIVVSPLIALIQDQVDHLLALKVRVSSLNSKLSAQERKELLADLKQEKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRYLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R V ++W+
Sbjct: 249 ALGQKADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKVSERMLVQNEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ F++ K +K + + S K SI F +V +CE GCR I + FG+ C
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKASIMAFDALVTFCEELGCRHAAISKYFGDAPPAC 427
Query: 428 VASVTH 433
H
Sbjct: 428 AKGCDH 433
>gi|56461647|ref|YP_156928.1| superfamily II DNA helicase [Idiomarina loihiensis L2TR]
gi|56180657|gb|AAV83379.1| Superfamily II DNA helicase, RecQ [Idiomarina loihiensis L2TR]
Length = 614
Score = 333 bits (855), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 175/416 (42%), Positives = 248/416 (59%), Gaps = 30/416 (7%)
Query: 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69
ST++ + PL ++ L FG+ QFRD Q D +QA + GRD LMPTGGGKS+C
Sbjct: 4 STAEKAQFDPLKQQ------LESTFGYHQFRDGQEDIMQAAMQGRDSLVLMPTGGGKSLC 57
Query: 70 YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
YQ+PA+ G+ LV+SPL++LM++QV LK I+ L S + Q + L SG
Sbjct: 58 YQLPAICGDGLTLVISPLLSLMQDQVEALKALDISAATLHSGVSSQESMATMQGLQSG-- 115
Query: 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
++LLYV+PE P F+ +L+ + LN +A+DEAHCIS WGHDFRP Y KL LRN
Sbjct: 116 DIKLLYVSPERVLQPTFIERLQTLK----LNFIAVDEAHCISQWGHDFRPEYGKLGVLRN 171
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL 249
YLP+VP +ALTATA Q D++E LCL+ PLV +SSF+RPN+ Y V+ K Y L
Sbjct: 172 YLPNVPFMALTATADSATQHDIIERLCLREPLVHRSSFDRPNIRYVVQEK------YKPL 225
Query: 250 CSV---LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
V +K I+YC R +ELS L G+ A YHAG+ + + S L ++
Sbjct: 226 KQVRDYVKKQKGAAGIIYCGSRKKTEELSESLQQAGVRAAPYHAGIEHQIKESTLRQFLR 285
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VVVATVAFGMGI++ ++R V HF+IP+S+E++YQE+GRAGRD LP+++++ Y D
Sbjct: 286 DDIDVVVATVAFGMGINKPNIRFVIHFDIPRSVESYYQETGRAGRDGLPAEAVMLYDPRD 345
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + ++ +++ + ++ FS M E CRR +L F E
Sbjct: 346 AQWIRRMIEDQENEQRRLVEAQK---------FSAMQAMAEAQTCRRLVVLNYFNE 392
>gi|299743122|ref|XP_001835556.2| hypothetical protein CC1G_03338 [Coprinopsis cinerea okayama7#130]
gi|298405510|gb|EAU86127.2| hypothetical protein CC1G_03338 [Coprinopsis cinerea okayama7#130]
Length = 787
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 162/356 (45%), Positives = 234/356 (65%), Gaps = 12/356 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIV 81
+E + L+ FG++ ++ KQ + ++A +SG+D + PTG GKS+C+QIPA+A KPG+
Sbjct: 17 EERCLNALKRTFGYSSYKGKQKEIVEAAVSGQDVLVVAPTGMGKSLCFQIPAIADKPGVS 76
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPL+ALM+NQV L+ +G+ SS + + + +I EDL+S P LRLLYVTPE
Sbjct: 77 LVVSPLLALMKNQVETLRGRGVPTASFSSETSKEERQEITEDLESDTPQLRLLYVTPEKL 136
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+T F+ + +H G LN + +DEAHCIS WGHDFR YR++ S RN PDVPI+ALTA
Sbjct: 137 STQEFLRLMDHLHDVGQLNRLVVDEAHCISEWGHDFRAEYRRIGSFRNRYPDVPIMALTA 196
Query: 202 TAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRY------KDLLDDAYADLCSVL 253
TA P VQ D++ +L L + + ++ FNR NL+YEVRY K ++D + + ++
Sbjct: 197 TATPDVQSDIIHNLKLSSDNLFRALHPFNRANLYYEVRYLSDRNPKTRMEDIHKYIKTLY 256
Query: 254 KANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQ 310
G +C I+YC + C+EL+ +L GI+ +Y+ G+ + L W+ S
Sbjct: 257 TRRGKVSCGIIYCRTKAACEELTQFLRKNGINAGSYYRGIPPTKLDATLRRWLDGSGEID 316
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
VVVAT+AFGMGID+ DVR + HF++PKS E FYQE+GRAGRD LP+K +LY+ +D
Sbjct: 317 VVVATIAFGMGIDKGDVRYIIHFDLPKSFEGFYQETGRAGRDGLPAKCVLYFSRED 372
>gi|172036703|ref|YP_001803204.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|354554517|ref|ZP_08973821.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
gi|171698157|gb|ACB51138.1| ATP-requiring DNA helicase [Cyanothece sp. ATCC 51142]
gi|353553326|gb|EHC22718.1| ATP-dependent DNA helicase RecQ [Cyanothece sp. ATCC 51472]
Length = 711
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 248/402 (61%), Gaps = 14/402 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L++ FG+ QFR Q I L+ +D +MPTGGGKS+C+Q+PAL K G+ +VV
Sbjct: 7 SLENALKYFFGYDQFRSGQKQIINEALNNKDLLVIMPTGGGKSLCFQLPALLKSGVCIVV 66
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L + GI FL+ST + + GK ++LLYV PE
Sbjct: 67 SPLIALMQDQVDTLLDNGIGATFLNSTLNREELQSRENAILKGK--IKLLYVAPERLLND 124
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F++ L + + L+ AIDEAHC+S+WGHDFRP YR+L LR P VP+ ALTATA
Sbjct: 125 NFLNFLDFLRQKVGLSGFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPQVPMFALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L LQNP V +SF+RPNL+YEV+ K +Y L + +++ + I+Y
Sbjct: 185 KRVRADIIEQLGLQNPTVHVASFDRPNLYYEVQEKS--RRSYTQLLNYVRSQ-EGSGIIY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + ++ L GI YHAG+ D R+ +I +++VAT+AFGMGI++
Sbjct: 242 CLSRKNVETIAFRLQQDGIEALPYHAGMYDDERAVNQTRFIRDDVRIIVATIAFGMGINK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD P+ L++ D +R+E+++ + + Q
Sbjct: 302 PDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFFSFGDLKRLEYLIDQKIDEKEQ- 360
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
R ++ + Q+VDY EG+ CRR IL FG+Q G
Sbjct: 361 -----RVGRQQV---RQVVDYAEGTECRRSIILRYFGQQYKG 394
>gi|431908771|gb|ELK12363.1| ATP-dependent DNA helicase Q5 [Pteropus alecto]
Length = 991
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/431 (41%), Positives = 255/431 (59%), Gaps = 12/431 (2%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THHSFPFDREHRVQSTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +VVSPLIAL+++QV L + L+S + Q K ++ DL+ KP
Sbjct: 63 LPALLTKGITVVVSPLIALIQDQVDHLLALKVQVSSLNSKLSAQEKKELLSDLEQEKPRT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAAAASFQPTLNSLVSRRLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P +ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D + +L
Sbjct: 183 AHAPCVALTATATPQVQEDVFAALHLKQPVAAFKTPCFRANLFYDVQFKELLFDPFGNLR 242
Query: 251 SV-LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
+KA G C IVYC R C++L+ LS G++ AYHAGL R+ V +
Sbjct: 243 DFCIKALGQKADKRLSGCGIVYCRTREACEQLAIELSYRGVNAKAYHAGLKASERTLVQN 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
+W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY
Sbjct: 303 EWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+DR ++ F++ K +K + + S K + F +V +CE GCR I + FG+
Sbjct: 363 SRNDRDQVSFLIRKEVAKLQEKRGNKA-SDKSAFLAFDALVTFCEELGCRHAAIAKYFGD 421
Query: 423 QVLGCVASVTH 433
C H
Sbjct: 422 APPTCTRGCDH 432
>gi|395747150|ref|XP_002825880.2| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein [Pongo abelii]
Length = 1398
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 178/406 (43%), Positives = 240/406 (59%), Gaps = 19/406 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 640 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 698
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +Q I +L+ +T T IY L P ++LLYVTPE
Sbjct: 699 TIVISPLRSLIVDQ--------IPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 750
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 751 ICASNRLVSTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 810
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 811 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 870
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 871 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDDCQVICATIAF 930
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 931 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEMSHCLLFYTYHDVTRLKRLIMMEK 990
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 991 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1029
>gi|307183296|gb|EFN70165.1| Bloom syndrome protein-like protein [Camponotus floridanus]
Length = 1313
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 239/405 (59%), Gaps = 13/405 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L K+ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 618 HSQEML-KIFRQRFGLYTFRPNQLQAINATLLGFDCFVLMPTGGGKSLCYQLPALLSVGL 676
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LSS+ T +Y +L +P L++LYVTPE
Sbjct: 677 TIVISPLKSLILDQVQKLTSLDIPAAHLSSSITDNQAEAVYRELAKKEPILKILYVTPEK 736
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ + L ++ R LL IDEAHC+S WGHDFRP Y++L LR+ P VP +AL
Sbjct: 737 ISASTKLCNTLTILYERELLARFVIDEAHCVSQWGHDFRPDYKRLKCLRDNYPKVPTMAL 796
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+ D++ L + NP S FNRPNL Y + K + + + ++ +T
Sbjct: 797 TATATPRVRTDILHQLGMTNPKWFMSGFNRPNLRYSIITKKGKNCSDEVIAMIMTKYRNT 856
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C IVYCL R CD+ +A + GI +YHAGL D RS+ WI+ V+ AT+AFG
Sbjct: 857 CGIVYCLSRKDCDDYAAQMKKNGIKALSYHAGLTDNQRSNCQGRWIADEIHVICATIAFG 916
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS-KNQ 378
MGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++ NQ
Sbjct: 917 MGIDKPNVRFVIHAALPKSIEGYYQESGRAGRDGEIADCILFYHYADMHRIRKMIELDNQ 976
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
S Q T + + +MV +CE + CRR L FGE
Sbjct: 977 S--PQVIGTH-------MDNLFKMVAFCENTTDCRRSLQLNYFGE 1012
>gi|261854926|ref|YP_003262209.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
gi|261835395|gb|ACX95162.1| ATP-dependent DNA helicase RecQ [Halothiobacillus neapolitanus c2]
Length = 609
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 174/407 (42%), Positives = 242/407 (59%), Gaps = 21/407 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PLH +L FG+ FR Q + I V+SGRD LMPTGGGKS+CYQ+PALA
Sbjct: 7 SSPLH-------ILNTVFGYPAFRGPQAEVIDTVMSGRDALVLMPTGGGKSLCYQVPALA 59
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G +VVSPLIALM++QV L++ G+A FL+STQT + + + L +G +L LLYV
Sbjct: 60 LSGTAIVVSPLIALMQDQVAALRQAGVAAAFLNSTQTGEEAQLVRKQLRAG--TLDLLYV 117
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE +S L+ +NL+AIDEAHC+S WGHDFRP Y +L L Y PD+P
Sbjct: 118 APERLLNADTLSLLRDAS----INLIAIDEAHCVSQWGHDFRPEYIRLGELGQYFPDIPR 173
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA Q++++ L L N V SSF+RPN+ Y + A L + +
Sbjct: 174 IALTATADGTTQQEILYRLGLNNARVFISSFDRPNIRYHIAQNHAGSARDALLRFIRDNH 233
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ IVYCL R +E++A+LS G++ AYHAGL R L ++ +VVAT+
Sbjct: 234 ANEAGIVYCLSRKRVEEIAAWLSDQGLTALAYHAGLPATQREQTLRRFLDEDGVIVVATI 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H N+PKS+EA+YQE+GRAGRD LP+++ + YG+ D + ++S+
Sbjct: 294 AFGMGIDKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPAEAWMRYGLQDVITLRQMMSE 353
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + E + M+ E + CRR+ +L FGEQ
Sbjct: 354 SNAD--------EAIKRIEQHKLDAMLGLSESTACRRQTLLGYFGEQ 392
>gi|413920232|gb|AFW60164.1| hypothetical protein ZEAMMB73_604033 [Zea mays]
Length = 618
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 245/403 (60%), Gaps = 30/403 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A + +DCF LMPTGGGKS+CYQ+PA PG+ +VVSPL++L+++
Sbjct: 214 FGNKGFRPLQYEACRAAMDNQDCFILMPTGGGKSLCYQLPATLHPGVTVVVSPLLSLIQD 273
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLK 151
Q++ L + + FL+S QT + + ++L GKP+ +LLYVTPE T FM L+
Sbjct: 274 QIVALTYRFAVPAAFLNSQQTSAQASAVIQELRCGKPAFKLLYVTPERIVTNYSFMETLR 333
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V+KDV
Sbjct: 334 GLDQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATESVRKDV 393
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ +L + N +VLK SF+R NL YEV K DLL + + + I
Sbjct: 394 LGALRIPNAVVLKRSFDRLNLNYEVIGKTKTFQKQLGDLLKERFM----------NESGI 443
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHA L + R+SV + W S +V+ AT+AFGMG
Sbjct: 444 VYCLSKNECADTAKFLREKYKIKCAHYHASLAARQRTSVQEKWHSGEVKVICATIAFGMG 503
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD+LP+ ++ Y D R+ +L ++
Sbjct: 504 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDELPAHCIVLYQKKDFSRIVCMLRNGENFR 563
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
S+SF +KK M YCE + CRR+ +L+ FGEQ
Sbjct: 564 SESFRVAMEQAKK-------MQAYCELKTECRRQALLQHFGEQ 599
>gi|327265015|ref|XP_003217304.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Anolis carolinensis]
Length = 1026
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 174/410 (42%), Positives = 248/410 (60%), Gaps = 12/410 (2%)
Query: 30 LRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG F+ Q +A V+ G +D F MPTG GKS+CYQ+PA+ GI +VVSPL
Sbjct: 16 LKNVFGFDSFKTPLQKNATLTVVKGDKDVFICMPTGAGKSLCYQLPAVLAAGITIVVSPL 75
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L + L+S ++Q + I DL S P +LLY+TPE+ ++ F
Sbjct: 76 IALIQDQVDHLLSLKVRVSSLNSKISVQERKAIITDLMSDTPKTKLLYITPEMASSSSFQ 135
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L+ + SR LL+ + +DEAHC+S WGHDFRP Y +L SLR +P+ P +ALTATA +V
Sbjct: 136 PTLEVLVSRSLLSYLIVDEAHCVSQWGHDFRPDYLRLGSLRCRIPNTPCIALTATATKRV 195
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLCSVLKANGDT---- 259
Q D++ SL L+ P+ K+ R NLFY+V+YK+LL D Y D C D
Sbjct: 196 QDDIIASLKLKLPVTTFKTPCFRSNLFYDVQYKELLTDPYENLKDFCLNSLGKHDISGAY 255
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C I+YC R C++++ L+ G+ AYHAGL R+SV +W+ + Q++VAT++
Sbjct: 256 SGCGIIYCRMREVCEQVAIELNYRGLRAKAYHAGLKAAERTSVQSEWMEEKVQIIVATIS 315
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ +VR V H+NIPKSM +YQESGRAGRD PS LYY DR ++ F++ K
Sbjct: 316 FGMGVDKANVRFVAHWNIPKSMAGYYQESGRAGRDGKPSSCRLYYSRADRDQVSFLIKKE 375
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+K + T + S K ++DF +V + E CR I FG+ + C
Sbjct: 376 IAKLQEKRGTLKESDKAMMTDFDAVVAFSEELSCRHAAIANFFGDAIPEC 425
>gi|154253433|ref|YP_001414257.1| ATP-dependent DNA helicase RecQ [Parvibaculum lavamentivorans DS-1]
gi|154157383|gb|ABS64600.1| ATP-dependent DNA helicase RecQ [Parvibaculum lavamentivorans DS-1]
Length = 633
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/414 (43%), Positives = 249/414 (60%), Gaps = 26/414 (6%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+KPL E ++K + FG FR +Q + I+ V+ G D L+PTG GKS+CYQIPAL
Sbjct: 32 DKPLPHPEEVLKSI---FGLPSFRGEQAEIIRHVVDGGDAVVLLPTGAGKSLCYQIPALC 88
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G+ +VVSPLIALM +QV L++ G+ L+ST T + I E L +G+ L LLYV
Sbjct: 89 REGVAVVVSPLIALMRDQVEALRQSGVRAAALNSTLTQEEARDIREALTAGE--LDLLYV 146
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE A+ GF+S L ++ L L AIDEAHCIS WGHDFRP Y +L L+ PDVP
Sbjct: 147 TPERLASDGFISFLARVP----LALFAIDEAHCISQWGHDFRPEYLQLGRLKERFPDVPR 202
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
LALTATA P+ + D++ L L + + +SF+RPN+ Y + KD +A + L LKA+
Sbjct: 203 LALTATADPQTRDDLVHRLQLDDARIFSASFDRPNIRYTIVRKD---NAKSQLRDFLKAH 259
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R +E + +L+A GI YHAGL+ R D ++ V+VAT+
Sbjct: 260 EGASGIVYCLSRKKVEETADWLTAQGILALPYHAGLDRSIRDKHQDAFLKDEGPVLVATI 319
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFI 373
AFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD LPS + + +GM D RRRM
Sbjct: 320 AFGMGIDKPDVRFVAHLDLPSSIEAYYQETGRAGRDGLPSDAWMAWGMSDVSLRRRM--- 376
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ + + ER+ ++ CE + CRR+ +L FGE G
Sbjct: 377 --IDEGASPELVKQVERTK------LDALLHVCETATCRRQALLAHFGESHAGA 422
>gi|91772141|ref|YP_564833.1| ATP-dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
gi|91711156|gb|ABE51083.1| ATP dependent DNA helicase RecQ [Methanococcoides burtonii DSM
6242]
Length = 647
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 248/397 (62%), Gaps = 18/397 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ L+ +FG+++FR Q D I VL+ +D F LMPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 3 RTLQKYFGYSEFRPLQEDIINDVLNKKDVFVLMPTGGGKSICYQIPALIMDGLAVVVSPL 62
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV GL GI+ +L+ST + KI + G ++ +LYV PE M
Sbjct: 63 ISLMKDQVDGLVSNGISAAYLNSTLSYNEVQKITRAIVEG--NVDILYVAPERLC----M 116
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+++ S ++L AIDEAHCIS WGHDFRP YR++ L+ PDVP++ALTATA KV
Sbjct: 117 KSTQELLSHVNVSLFAIDEAHCISEWGHDFRPEYRRMGFLKKKYPDVPVIALTATATAKV 176
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+++ ++ L L +P V +SF+R NL YE+R K+ + Y D+ S LK I+YC
Sbjct: 177 KENTIKQLDLVSPSVYVASFDRANLSYEIRPKN---NTYGDMVSYLKGQRGNSGIIYCNS 233
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + + +S L+ G YHAGLND R + +I ++VATVAFGMGID+ +V
Sbjct: 234 RKSVESVSTKLNREGFHALPYHAGLNDAKRQDNQERFIRDDVDIIVATVAFGMGIDKPNV 293
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+++PK++E +YQE+GR GRD L +LY+ D ++++++ + K+ +
Sbjct: 294 RFVIHYDLPKNLEGYYQETGRGGRDGLECDCILYFSRADWYKIKYLIDQKPKKSERDI-- 351
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+++ +M+DYCE + CRRK +L FGE++
Sbjct: 352 -------AMTKLQEMIDYCESTSCRRKALLHYFGEEL 381
>gi|302689945|ref|XP_003034652.1| hypothetical protein SCHCODRAFT_15081 [Schizophyllum commune H4-8]
gi|300108347|gb|EFI99749.1| hypothetical protein SCHCODRAFT_15081 [Schizophyllum commune H4-8]
Length = 702
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 245/407 (60%), Gaps = 17/407 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSPLIALME 92
FG+ FR KQ +A++A + G+D F L PTG GKS+C+Q+PA+A G+ LVVSPL+ALM+
Sbjct: 72 FGYPSFRGKQKEAVEAAVQGQDVFVLAPTGMGKSLCFQVPAVAAAHGVTLVVSPLLALMK 131
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
NQV L KG+ L+S VK + DL S +P RLLYV+PE T F + L+
Sbjct: 132 NQVEALDAKGVHVASLTSETLKSVKNAVINDLRSARPKTRLLYVSPERFCTADFQAILEG 191
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H G+LN + +DEAHCIS WGHDFR YRKL R+ P+VPI+ALTATA P VQ D++
Sbjct: 192 LHDNGMLNRLVVDEAHCISQWGHDFRAEYRKLGMFRDNFPEVPIMALTATATPAVQSDIL 251
Query: 213 ESLCLQNPLVLKS--SFNRPNLFYEVRYK----DLLDDAYADLCSVL--KANGDTCAIVY 264
SL + + + K+ FNR NL+YEVRY + D Y DL S L + + IVY
Sbjct: 252 RSLNMTDDRLFKALHPFNRANLYYEVRYSCSATGQMKDIY-DLISRLHERRGRPSSGIVY 310
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-----QVVVATVAFG 319
C R TCDEL+ +L G++ YH G+ L +W + + VVVAT+AFG
Sbjct: 311 CRRRDTCDELAEFLRKRGMNARPYHRGIKGPTLDKTLAEWTAGGQVEGDLHVVVATIAFG 370
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN-Q 378
+GID+ DVR + H+++P S E +YQE+GRAGRD PS+ +LYY +D + ++ +
Sbjct: 371 LGIDKPDVRYIIHYDLPTSFEGYYQETGRAGRDGAPSRCILYYSREDAYNAKKLVQMSLA 430
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGEQV 424
++ S + S++S+ F ++V + + CR I FGE +
Sbjct: 431 NRASHVGANGPAPSQRSVDSFDELVTFAHKADTCRHVAICRYFGEHI 477
>gi|359458485|ref|ZP_09247048.1| ATP-dependent DNA helicase RecQ [Acaryochloris sp. CCMEE 5410]
Length = 739
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 255/408 (62%), Gaps = 6/408 (1%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + ++L + L+ +FG+ QFR Q I+A L +D +MPTGGGKS+C+Q+P L P
Sbjct: 8 PGSDFKSLEEALKHYFGYDQFRVGQRPVIEAALQQQDLMVVMPTGGGKSLCFQLPGLLLP 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLIALM++QV L+ I FL+S+ + ++ SGK ++LLYV P
Sbjct: 68 GLTVVISPLIALMQDQVTTLQVNDIPATFLNSSIDAATARQRISEIYSGK--IKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F++ L ++ ++ L A+DEAHC+S WGHDFRP YR+L+ +R VP+
Sbjct: 126 ERLLHESFLNLLDQVQAQVGLAAFAVDEAHCVSEWGHDFRPEYRRLAEVRQRYAQVPVYT 185
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V++D+++ L L+ P V +SFNRPNL+YEVR K AYADL ++ +G
Sbjct: 186 LTATATERVRQDIIQQLQLRQPFVHVASFNRPNLYYEVRPKS--RQAYADLYREIRQHGQ 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E+SA L GI YHAG++D AR+ + +I QV+VATVAF
Sbjct: 244 DSGIVYCLSRREVNEISARLQGDGIRALPYHAGMSDSARTLNQERFIRDDVQVMVATVAF 303
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+N+P+++E +YQE+GRAGRD PSK LL++ D +E+++ +
Sbjct: 304 GMGIDKPDVRFVIHYNLPRNIEGYYQEAGRAGRDGEPSKCLLFFSTKDIHTLEWLIERK- 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ + E + + Q++DY E + CRR L FGE G
Sbjct: 363 -VDPETGNPLENEQRIARQQLRQVIDYAESTVCRRTVQLGYFGETFGG 409
>gi|291514588|emb|CBK63798.1| ATP-dependent DNA helicase RecQ [Alistipes shahii WAL 8301]
Length = 730
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 248/407 (60%), Gaps = 30/407 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G+D F LMPTGGGKS+CYQ+PA+ G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGKDTFVLMPTGGGKSLCYQLPAMLMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ E GIA FL+S+ ++ +D+ GK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSAESGIA-HFLNSSLNKTAVAQVRQDVLDGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L+KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLRKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGSAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVD---HDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ DD++ R +V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDASTRAANQDDFLMERVEVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE---- 348
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K Q E+ K + + V Y E S CRRK +L FGE
Sbjct: 349 ----KFMQGKPIAEQEIGKLL--LLETVSYAESSMCRRKTLLHYFGE 389
>gi|383934161|ref|ZP_09987603.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
gi|383704617|dbj|GAB57694.1| ATP-dependent DNA helicase RecQ [Rheinheimera nanhaiensis E407-8]
Length = 604
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 248/397 (62%), Gaps = 18/397 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ LL+ HFG+++FR Q I+A L+G+D F LMPTGGGKS+CYQ+PAL P + +VVS
Sbjct: 5 LLPLLKQHFGYSEFRSGQHAVIEAALAGQDSFVLMPTGGGKSLCYQLPALLLPQVTIVVS 64
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL++LM++QV LK GIA EF++S+ + + +++ L G +L+LLYV PE P
Sbjct: 65 PLMSLMKDQVDALKANGIAAEFVNSSLSREQVLQVFARLRQG--TLKLLYVAPERLLQPQ 122
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ +L+ + ++L AIDEAHCIS WGHDFRP Y L+ L+ VP++ALTATA
Sbjct: 123 FLDRLQDVG----VSLFAIDEAHCISQWGHDFRPDYMALALLKQRFASVPVMALTATADS 178
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+++ L LQ P V SF+RPN+ Y V+ K + L S L+ IVYC
Sbjct: 179 ATRQDILQQLNLQQPYVHLGSFDRPNIRYTVQEKFRPTE---QLISYLQQQDGASGIVYC 235
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DEL+ L G + AAYHAGL+ R+ V D + Q++VATVAFGMG+++
Sbjct: 236 SSRRKVDELTEQLKQRGFNAAAYHAGLSSDERNQVQDAFKRDDYQLIVATVAFGMGVNKS 295
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
++R V HF +P+++EA+YQE+GRAGRD +P++++L + D RM+ L N+ ++
Sbjct: 296 NIRFVVHFELPRTIEAYYQETGRAGRDGVPAEAMLLFDPADIGRMKRWLD-NEENQQRAE 354
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
T +R F M + E CRR+ +L FGE
Sbjct: 355 VTWQR--------FLAMAAFAEAQTCRRQVLLNYFGE 383
>gi|386821390|ref|ZP_10108606.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386426496|gb|EIJ40326.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 699
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 246/401 (61%), Gaps = 23/401 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ ++ L+ +FG+ FR Q + I +L+G DC +MPTGGGKS+CYQ+PAL + G+
Sbjct: 3 EETTILNTLKEYFGYDSFRPLQREIIDTILNGNDCLVIMPTGGGKSICYQLPALLQDGLT 62
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+V+SPLIALM++QV GL GI FL+S+Q+ + I+ D+++ K ++LLYV PE
Sbjct: 63 IVISPLIALMKDQVDGLNVNGIPACFLNSSQSTAEQEVIFNDIEAKK--IKLLYVAPE-- 118
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+S L+ I S ++L+A+DEAHCISSWGHDFRP+Y +L L+N P+ P++ALTA
Sbjct: 119 ----SLSYLENIFSSTKISLIAVDEAHCISSWGHDFRPAYTQLGFLKNRFPNTPLIALTA 174
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA ++D+ L + N +SF+R NL EVR D + L +
Sbjct: 175 TADKATREDIANQLNISNAKKFVASFDRKNLSLEVRPGT---DRIKQIIQFLNKRPNESG 231
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R T + ++ L G + AYHAG+N RS V +D+I+ + Q+V ATVAFGMG
Sbjct: 232 IVYCLSRKTTESIAEKLQQAGYNAEAYHAGVNHDGRSKVQEDFINDKTQIVCATVAFGMG 291
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ +VR V H+N+PK++E +YQE GRAGRD LPS +LL++ D ++
Sbjct: 292 IDKSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSYTLLFHSYADVVQL----------- 340
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q F+ +S+ ++ +M Y + CRRK +L FGE
Sbjct: 341 -QKFAEGAGNSEVQLAKLERMKQYADALSCRRKILLSYFGE 380
>gi|110636721|ref|YP_676928.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
gi|110279402|gb|ABG57588.1| ATP-dependent DNA helicase RecQ [Cytophaga hutchinsonii ATCC 33406]
Length = 725
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 171/400 (42%), Positives = 248/400 (62%), Gaps = 20/400 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++ L+ FG+ +FR +Q + I VLSG+D F +MPTG GKS+CYQ+PA++ PG+ +V+S
Sbjct: 9 VINKLKSVFGYDRFRGEQEEIINNVLSGKDTFVIMPTGAGKSLCYQLPAISLPGVAIVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM+NQV L G+ +FL+ST T ++ ++ +G+ ++LLYV PE
Sbjct: 69 PLIALMKNQVDQLNAFGVNAQFLNSTLTKAEINRVKKETLNGE--IKLLYVAPESLTKED 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ LKK ++ VAIDEAHCIS WGHDFRP YRK+ S+ + + +PI+ALTATA
Sbjct: 127 NILFLKK----AAISFVAIDEAHCISEWGHDFRPEYRKIHSIIESINNNIPIIALTATAT 182
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ D+ ++L + + ++ KSSFNR NLFYEVR K D L +KA I+Y
Sbjct: 183 PKVQLDIQKNLQMDDAVLFKSSFNRENLFYEVRPKG---DTKKKLIKFIKARKGQSGIIY 239
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +E++ L + YHAGL R D +++ V+VAT+AFGMGID+
Sbjct: 240 CLSRKKVEEIAELLRVNDVKALPYHAGLEPAVRMGNQDAFLNEDADVIVATIAFGMGIDK 299
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H++ PKS+E +YQE+GRAGRD L++Y M+D ++E K ++
Sbjct: 300 PDVRFVVHYDTPKSLEGYYQETGRAGRDGNEGHCLMFYSMNDIIKLE--------KFNKD 351
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ ER + + + ++M Y E S CRRK++L FGE +
Sbjct: 352 KTVTERENARQL--LNEMSSYAESSVCRRKQLLFYFGENL 389
>gi|431795569|ref|YP_007222473.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786334|gb|AGA76463.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 725
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/401 (44%), Positives = 240/401 (59%), Gaps = 22/401 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG QFR Q + +L G + F +MPTG GKS+CYQ+PA+ K G +
Sbjct: 6 KENLKKI----FGFNQFRGNQEAIVDNILQGNNTFVIMPTGAGKSLCYQLPAVTKEGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV L GI FL+ST + K+ +++ SG + +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLNAFGINAHFLNSTLSKTETNKVKKEVLSG--ATKLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTA 201
+ LK L+ VAIDEAHCIS WGHDFRP YRK+ S+ + D +PI+ALTA
Sbjct: 120 KEENVEFLKSAQ----LSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDALPIIALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNR NLFYEVR K D L +K+
Sbjct: 176 TATPKVQQDIQRNLNMEEADLFKSSFNRTNLFYEVRPK-AKSDTKKHLIKYVKSQKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L GI+ A YHAGL R DD+++ VVVAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIAELLKVNGINAAPYHAGLESAMRIKNQDDFLNEEVDVVVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E K
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYEDIVKLE--------KF 346
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ ER + K + +M Y E S CRR+ +L FGE
Sbjct: 347 NKDKPVNERENAKVL--LQEMAAYAESSVCRRRVLLHYFGE 385
>gi|392399436|ref|YP_006436037.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390530514|gb|AFM06244.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 729
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 169/405 (41%), Positives = 245/405 (60%), Gaps = 19/405 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K L K L+ FG+ QFR Q IQ +L G++ F +MPTG GKS+CYQ+PA+ + G
Sbjct: 2 IEQKINLKKTLKEVFGYNQFRGNQETIIQNLLDGKNTFVIMPTGAGKSLCYQLPAIVREG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLIALM+NQV L GI FL+ST + K+ + + +G + +LLYV PE
Sbjct: 62 TAIVISPLIALMKNQVDQLNAVGINASFLNSTLSKSESNKVKKSVLAG--NTKLLYVAPE 119
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
P + L K + L+ +AIDEAHCIS WGHDFRP YR++ + + L D+PI+AL
Sbjct: 120 SLTKPENLDFLAKAN----LSFIAIDEAHCISEWGHDFRPEYRRIRFIVDSLGDLPIIAL 175
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ+D+ ++L +++ V K+SFNR NL+YEVR K + L LK
Sbjct: 176 TATATPKVQQDIQKNLHMEDANVFKTSFNRQNLYYEVRPKT---NVKKQLIKYLKGKKGQ 232
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R +E+ +L I YHAGL+ R D +++ ++VAT+AFG
Sbjct: 233 SGIIYCLSRKKVEEIHEFLKVNDIKSRPYHAGLDSSIRMQNQDAFLNEEVDIIVATIAFG 292
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H++ PKS+E +YQE+GRAGRD L + +++Y +D ++E
Sbjct: 293 MGIDKPDVRCVIHYDAPKSLEGYYQETGRAGRDGLNADCIMFYSPEDIHKLE-------- 344
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
K ++ ER + + + +M DY CRR+++L FGE V
Sbjct: 345 KFNKDKPVTERDNARYL--LQEMADYATSGVCRRRQLLHYFGENV 387
>gi|358339333|dbj|GAA38465.2| bloom syndrome protein homolog [Clonorchis sinensis]
Length = 949
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/417 (42%), Positives = 248/417 (59%), Gaps = 22/417 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EA KL FG FR QL AI A L G DCF +MPTGGGKS+CYQ+PA + G+ LV
Sbjct: 207 EAFSKL----FGLKSFRRNQLQAINAALLGLDCFVIMPTGGGKSLCYQLPAAVQDGLTLV 262
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPL AL+ +QV ++ GI L+ TM ++Y L +LLYVTPE + A
Sbjct: 263 ISPLKALVLDQVTKMQSLGIVAAHLTGEATMTESDRVYASLHLATLRTKLLYVTPEKIAA 322
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L++++ R LL IDEAHC+S WGHDFRP YR LS LR P VP++A+TAT
Sbjct: 323 SDKLKGCLEQLYRRNLLQRFVIDEAHCVSQWGHDFRPDYRNLSILRTNFPKVPMMAMTAT 382
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P+V++D++ L ++N SFNR NL +EVR K L ++ V+ +
Sbjct: 383 ATPRVREDILHQLKMKNTKWFIQSFNRTNLKFEVRPKK-LKSCTKEIIEVIHSEFPRRSG 441
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGM 320
IVYCL R CD ++ LS G++ +AYHAG+ D R + + WI K ++V AT+AFGM
Sbjct: 442 IVYCLSRRECDLVAEELSRAGLAASAYHAGMTDAQRRRIQEAWIQEDKCKIVCATIAFGM 501
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H ++PKS+E +YQE+GR+GRD LP+ +LYY D R+ ++ + +
Sbjct: 502 GIDKPDVRFVIHHSLPKSIEGYYQEAGRSGRDGLPATCILYYHWHDVVRLRKLI-QGDTP 560
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ--------VLGCV 428
S +F+ + + +MV YCE CRR++IL FGE V+GC+
Sbjct: 561 GSNAFANVQLHEEA----LFRMVSYCENQIDCRRRQILSHFGEAFDAADCGLVVGCM 613
>gi|50307299|ref|XP_453628.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642762|emb|CAH00724.1| KLLA0D12694p [Kluyveromyces lactis]
Length = 1367
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 249/401 (62%), Gaps = 18/401 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
LR FG FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +VVS
Sbjct: 587 LRHVFGLDSFRPNQLEAVNATLQGKDAFVLMPTGGGKSLCYQLPAIVKSGRTSGTTIVVS 646
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L K I SS T + + + +G L L+Y++PE+ A+
Sbjct: 647 PLISLMQDQVEHLLAKDIKASMFSSKGTAEQRRMTFNLFMNGL--LELVYISPEMIKASV 704
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ K++ G L + +DEAHC+S+WGHDFRP Y++LS + PD+P++ALTATA+
Sbjct: 705 QCKKAISKLYEHGKLARIVVDEAHCVSNWGHDFRPDYKELSFFKQEYPDIPMIALTATAS 764
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+ D++ +L L NP+ LK SFNR NLFY+V K+ ++ +C +++ + I+
Sbjct: 765 EQVRMDIIHNLQLNNPVFLKQSFNRTNLFYQVLKKE--KNSIFQMCDMIRTKFKNQTGII 822
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++ SA + G+ CA YHAG++ R V DW + R QV+ ATVAFGMGID
Sbjct: 823 YCHSKNSCEQTSALMQKNGVKCAFYHAGMDPDERFQVQQDWQADRVQVICATVAFGMGID 882
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V HF +P+++E +YQE+GRAGRD S+ ++YY D R ++ ++ K+ KN
Sbjct: 883 KPDVRFVFHFTVPRTLEGYYQETGRAGRDGNFSQCIMYYSFRDVRTIQTMIQKD--KNLD 940
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ +K + Q++ YC+ + CRR+ +L F EQ
Sbjct: 941 MI-----NKEKHLDKLQQVMQYCDNRTDCRRQLVLSYFNEQ 976
>gi|256419821|ref|YP_003120474.1| ATP-dependent DNA helicase RecQ [Chitinophaga pinensis DSM 2588]
gi|256034729|gb|ACU58273.1| ATP-dependent DNA helicase RecQ [Chitinophaga pinensis DSM 2588]
Length = 733
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 246/405 (60%), Gaps = 20/405 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K +L+ LR HFG F+ Q I+++L+G+D F +MPTGGGKS+CYQ+PAL G L
Sbjct: 5 KVSLIDALREHFGFDSFKGNQEIIIKSILAGKDTFVIMPTGGGKSLCYQLPALMSSGCAL 64
Query: 83 VVSPLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+VSPLIALM+NQV ++ K FL+ST + K+ DL SGK ++LYV PE
Sbjct: 65 IVSPLIALMKNQVDLVRSYSSKDNVAHFLNSTLSKAQIKKVRTDLLSGKT--KMLYVAPE 122
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILA 198
+ +++ ++ +A+DEAHCIS WGHDFRP YR+L + + D +PI+A
Sbjct: 123 TLTKQENLDFFRELE----ISFIAVDEAHCISEWGHDFRPEYRRLKEMIEQINDSLPIIA 178
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D++++L L++P V SSFNR NL+YE+R K D ++ + +
Sbjct: 179 LTATATPKVQSDIVKNLELRDPQVFLSSFNRSNLYYEIRPKRKKDQTIREIVKFIHQHKG 238
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+Y L R T +EL+ L A I AYHAGL+ R+ D ++ V+VAT+AF
Sbjct: 239 KSGIIYTLNRKTTEELADMLVANNIKAVAYHAGLDAGTRAQRQDMFLHEDVDVIVATIAF 298
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+NIPKS+E +YQE+GRAGRD L + +Y D +++E ++
Sbjct: 299 GMGIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGICVCFYSYKDVQKLEHLM---- 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ S RE ++ ++ V Y E S CRRK IL FGE+
Sbjct: 355 --RDKPLSEREMGAQL----INETVAYAESSACRRKVILHYFGEK 393
>gi|115486585|ref|NP_001068436.1| Os11g0672700 [Oryza sativa Japonica Group]
gi|77552472|gb|ABA95269.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
gi|113645658|dbj|BAF28799.1| Os11g0672700 [Oryza sativa Japonica Group]
gi|125535256|gb|EAY81804.1| hypothetical protein OsI_36975 [Oryza sativa Indica Group]
gi|125568785|gb|EAZ10300.1| hypothetical protein OsJ_00135 [Oryza sativa Japonica Group]
Length = 588
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/403 (44%), Positives = 241/403 (59%), Gaps = 30/403 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A +S D F LMPTGGGKS+CYQ+PA PG+ +VV PL++L+E+
Sbjct: 182 FGNKSFRPLQYEACRAAVSNMDTFVLMPTGGGKSLCYQLPATLHPGVTVVVCPLLSLIED 241
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K I FL+S QT + + ++L SGKPS +LLYVTPE + F+ L
Sbjct: 242 QIVALNFKFAIPAAFLNSQQTPSQSSAVIQELRSGKPSFKLLYVTPERMAGNSSFIGILI 301
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H RGLL IDEAHC+S WGHDFRP YR L L+ P VPI+ALTATA V KD+
Sbjct: 302 GLHQRGLLARFVIDEAHCVSQWGHDFRPDYRGLGCLKQNFPRVPIMALTATATASVCKDI 361
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ +L + N VLK SF+R NL YEV K DLL + + ++ I
Sbjct: 362 LSTLRIPNATVLKRSFDRTNLNYEVIGKTKTPQKQLGDLLKERFMNM----------SGI 411
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C + + +L I CA YHAGL + RS+V W S +V+ AT+AFGMG
Sbjct: 412 VYCLSKNECADTAKFLREKYKIKCAHYHAGLAARQRSNVQGKWHSGEVKVICATIAFGMG 471
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD LP+ ++ Y D R+ +L + +
Sbjct: 472 IDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAHCIVLYQKKDLGRIVCMLRNSGNFK 531
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
S+SF +KK M YCE + CRR+ +L FGEQ
Sbjct: 532 SESFKVAMEQAKK-------MQTYCELKTECRRQTLLGHFGEQ 567
>gi|355672742|gb|AER95092.1| Bloom syndrome, RecQ helicase-like protein [Mustela putorius furo]
Length = 843
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/410 (43%), Positives = 242/410 (59%), Gaps = 15/410 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 73 HTKE-MMKIFHXKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 131
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 132 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATSIYLQLSKKDPIIKLLYVTPEK 191
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 192 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 251
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 252 TATANPRVQKDILTQLKILQPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPHD 311
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V W++ QV+ AT+AF
Sbjct: 312 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWVNQDGCQVICATIAF 371
Query: 319 GMGIDRKDVRLVCHF----NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++
Sbjct: 372 GMGIDKPDVRFVIHASLPKSVPKSVEGYYQESGRAGRDGETSHCLLFYTYHDVTRLKRLI 431
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ N + T ++ MV YCE + CRR ++L FGE
Sbjct: 432 LMEKDGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 474
>gi|308462738|ref|XP_003093650.1| CRE-HIM-6 protein [Caenorhabditis remanei]
gi|308249588|gb|EFO93540.1| CRE-HIM-6 protein [Caenorhabditis remanei]
Length = 1039
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 252/426 (59%), Gaps = 40/426 (9%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +V
Sbjct: 267 EELYSTLKSKFGFNQFRHRQKQCILSTLMGNDTFVLMPTGAGKSLCYQLPAVILPGVTVV 326
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
VSPL +L+E+Q + +KE GI E L++ + + IY DL S P+++LLYVTPE ++A
Sbjct: 327 VSPLRSLIEDQKMKMKELGIGCEALTADLSAGAQEDIYSDLTSENPTIKLLYVTPEKISA 386
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN--YLPDVPILALT 200
+ +S +H RGLL IDEAHC+S WGHDFRP Y KLS+LR + P VPI+ALT
Sbjct: 387 SGRLISVFYTLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSTLREKFHNPPVPIIALT 446
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-- 258
ATA PK+ D ++L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 447 ATATPKIVTDARDNLKMQNSKLFISSFVRDNLKY-----DLIPKAAKSLINVVEKMKQLY 501
Query: 259 --TCAIVYCLE-------------------RTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
IVYCL R C+ + L+ G+S YHAGLND R
Sbjct: 502 PGKSGIVYCLSRYKILQKKRQKIYLTLAFFRKECETVQMMLTKAGLSAEVYHAGLNDGLR 561
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
SV W++++ V+ AT+AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS
Sbjct: 562 VSVQKGWLANKFDVICATIAFGMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSY 621
Query: 358 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 416
L+ Y D R+ ++ + + +T RS +++ Q+V YCE S CRRK +
Sbjct: 622 CLMLYSYHDSIRLRRMIEEGNT------TTGVRSMH--LNNVLQVVAYCENVSVCRRKML 673
Query: 417 LESFGE 422
+E FGE
Sbjct: 674 VEHFGE 679
>gi|67924781|ref|ZP_00518182.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|416405865|ref|ZP_11687987.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
gi|67853376|gb|EAM48734.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[Crocosphaera watsonii WH 8501]
gi|357261215|gb|EHJ10512.1| ATP-dependent DNA helicase RecQ [Crocosphaera watsonii WH 0003]
Length = 710
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 252/402 (62%), Gaps = 14/402 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ HFG+ QFR Q I L+ +D +MPTGGGKS+C+Q+PAL KPG+ +VV
Sbjct: 7 SLENALKDHFGYDQFRPGQKQIITEALNNKDLLVIMPTGGGKSLCFQLPALLKPGLCIVV 66
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L + GI FL+ST + + + +GK ++LLYV PE
Sbjct: 67 SPLIALMQDQVDSLLDNGIGATFLNSTLSREQLKSRENSILNGK--IKLLYVAPERLLND 124
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F++ L ++ + L+ AIDEAHC+S+WGHDFRP YR+L LR P VP++ALTATA
Sbjct: 125 SFLNFLDFLNQKIGLSSFAIDEAHCVSAWGHDFRPEYRQLKQLRFRYPTVPVVALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V++D++E L L+ P V +SF+RPNL+YEV+ K +YA L + +++ + IVY
Sbjct: 185 KRVREDIIEQLGLEKPSVHLASFDRPNLYYEVQQKS--RRSYAQLLNYIRSQ-EGSGIVY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + ++ L GI YHAG+ D R++ +I +++VATVAFGMGI++
Sbjct: 242 CLSRKNVETVAFRLQQDGIEALPYHAGMYDDERATNQTRFIRDDVRIIVATVAFGMGINK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD P+ L+ D +++++++ + S Q
Sbjct: 302 PDVRFVVHYDLPRNLESYYQESGRAGRDGEPANCALFLSFGDLKKIDYLIDQKSSPKEQK 361
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ ++VDY E + CRR IL FG+Q G
Sbjct: 362 IARQQ---------LRKVVDYAEANECRRTIILRYFGQQHNG 394
>gi|307107282|gb|EFN55525.1| hypothetical protein CHLNCDRAFT_133956 [Chlorella variabilis]
Length = 817
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 172/400 (43%), Positives = 246/400 (61%), Gaps = 28/400 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG++ FR +Q I+A LSGRDCF LMPTGGGKS+ YQ+PA+ PG+ +VV+PL++LM++
Sbjct: 283 FGNSSFRSEQRQIIEAALSGRDCFVLMPTGGGKSLTYQLPAVLTPGVTVVVTPLLSLMQD 342
Query: 94 QVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSK 149
QV L G+ +LSS QT+ ++ +L +P+++LLYVTPE L
Sbjct: 343 QVQALTLLPSGGVPTTYLSSQQTVAETRAVFLELGKARPTIKLLYVTPEQLVRGERLKGA 402
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQ 208
L+ +HS GLL + +DEAHC+S+WGHDFRP Y++L ++++ L VP++ALTATA PKV+
Sbjct: 403 LRALHSHGLLARLVVDEAHCVSAWGHDFRPDYKQLGAVKSSCLRGVPMMALTATATPKVR 462
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRY----KDLLDDAYADLCSVLKANGDTCAIVY 264
+D+M +L + P + SF RPNL + Y L+ ++ ++ + + IVY
Sbjct: 463 QDIMSTLHMAAPRQFQVSFFRPNLCFRKDYTRSEDSGLEGYMEEMMVYIQNHREGSGIVY 522
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + + AA HAG+ K R V +DW + R QVVVAT+AFGMG+D+
Sbjct: 523 CLSRDNTE-----------TSAAVHAGMTPKQRMQVQNDWRTGRVQVVVATIAFGMGVDK 571
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V HF + KSME +YQE+GRAGRD P++ LLYY D R+ +L K + QS
Sbjct: 572 ADVRYVIHFTLSKSMEGYYQEAGRAGRDGGPAECLLYYAKRDVPRIVQLLHKGAKRAKQS 631
Query: 385 FSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
F ++ + QM YCE G CR ++LE FGE+
Sbjct: 632 F-------QRELDLLKQMQAYCEDGERCRHAQVLEYFGER 664
>gi|402846704|ref|ZP_10895013.1| putative ATP-dependent DNA helicase RecQ [Porphyromonas sp. oral
taxon 279 str. F0450]
gi|402267396|gb|EJU16791.1| putative ATP-dependent DNA helicase RecQ [Porphyromonas sp. oral
taxon 279 str. F0450]
Length = 539
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 170/397 (42%), Positives = 244/397 (61%), Gaps = 21/397 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG QF+ Q + I+++L+G+D F LMPTGGGKS+CYQ+PAL PG +++SPLIA
Sbjct: 10 LKKHFGFDQFKGNQQEIIESILAGQDTFVLMPTGGGKSLCYQLPALLMPGTAVIISPLIA 69
Query: 90 LMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV ++ E+ FL+S+ + ++ ED+ G+ +LLYV PE
Sbjct: 70 LMKNQVDAVRGFCEEDTVAHFLNSSLSRTRLEEVKEDVRQGRT--KLLYVAPESLHKKEN 127
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L++I ++ A+DEAHCIS WGHDFRP YR++ ++ + D PI+ALTATA PK
Sbjct: 128 IKLLQEIP----ISFYAVDEAHCISEWGHDFRPEYRRIRAIVTEIADRPIMALTATATPK 183
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
VQ D+M++L +++ V +SSFNRPNL Y + K ++ D+ + +N IVYC+
Sbjct: 184 VQHDIMKNLGMESAAVFQSSFNRPNLLYRIHPKTA--ESERDIVRYILSNPKKSGIVYCM 241
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
RT L+ L A GI YHAGL+ K R+ D +I R +V+VAT+AFGMGID+ D
Sbjct: 242 RRTQVMNLTEVLQANGIKALPYHAGLDAKERAENQDAFIEERAEVIVATIAFGMGIDKPD 301
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF++PKS+E +YQE+GRAGRD + YY DD ++E +K +S Q +
Sbjct: 302 VRYVIHFDMPKSLEGYYQETGRAGRDGGEGVCIAYYDHDDLEKLER-FTKGKSVADQEIA 360
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + DY E S CRR +L FGE+
Sbjct: 361 R---------ALLRETADYAETSICRRSFLLNYFGER 388
>gi|409195579|ref|ZP_11224242.1| putative ATP-dependent DNA helicase [Marinilabilia salmonicolor JCM
21150]
Length = 726
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 178/401 (44%), Positives = 242/401 (60%), Gaps = 24/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ HFG F+ Q IQ VL G D F LMPTGGGKS+CYQ+PAL G +++S
Sbjct: 7 LSSYLKRHFGFDTFKGNQEAIIQNVLDGNDTFVLMPTGGGKSLCYQLPALILDGTAIIIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ + GIA FL+S+ T ++ +D+ SGK RLLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEDDGIA-HFLNSSLTKSAIQQVKDDVISGKT--RLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK++ ++ A+DEAHCIS WGHDFRP YR++ + + + D P++ALTA
Sbjct: 124 TKEDNIQFLKQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIISEIGDAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + N V KSSFNR NLFYEVR K +A ++ +LK N A
Sbjct: 180 TATPKVQHDIQKNLGMLNAHVYKSSFNRANLFYEVRPKV---NATREIIKILKENTGKSA 236
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L GI YHAG++ RS D ++ V+VAT+AFGMG
Sbjct: 237 IIYCLSRKKVEELAETLVVNGIKALPYHAGMDAATRSGNQDKFLMEEIDVIVATIAFGMG 296
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR+V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 297 IDKPDVRIVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSYKDIQKLE--------KF 348
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q E+ K + + V Y E S CRRK +L FGE
Sbjct: 349 MQGKPLAEQEIGKQL--LLETVAYAESSVCRRKMLLHYFGE 387
>gi|312373074|gb|EFR20899.1| hypothetical protein AND_18334 [Anopheles darlingi]
Length = 1384
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 181/401 (45%), Positives = 242/401 (60%), Gaps = 12/401 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + + FG FR QL I A L GRDCF LMPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 591 LQMVFKETFGLRTFRPNQLQVINATLLGRDCFVLMPTGGGKSLCYQLPALLTTGVTIVVS 650
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV L I LS M +IY+DL S P L+LLYVTPE ++++
Sbjct: 651 PLKSLILDQVQKLNTLDIPAGSLSGEAQMADVQRIYDDLYSSCPVLKLLYVTPEKISSSA 710
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F + L +H R L + IDEAHC+S+WGHDFRP Y++L LR PDVPI+ALTATA
Sbjct: 711 KFQNLLSALHRRRQLGRIVIDEAHCVSAWGHDFRPDYKRLYMLREQFPDVPIIALTATAN 770
Query: 205 PKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAI 262
+V+ DV+ L LQ + SSFNRPNL Y V K ++ +++KA I
Sbjct: 771 TRVRMDVITQLKLQPDTRWFLSSFNRPNLKYLVLPKKGAS-TKGEMINLIKAKFARDTGI 829
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL + CD+L+ GI +YHAGL D R + +WI R +VV AT+AFGMGI
Sbjct: 830 VYCLSKKECDQLATDFRKAGIKAKSYHAGLTDTIREATQKEWIGDRIKVVCATIAFGMGI 889
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+ +PKS+E +YQESGRAGRD + +LYY D +R ++ + S
Sbjct: 890 DKPDVRYVLHYCMPKSIEGYYQESGRAGRDGEIATCILYYNYSDMQRYRKMMDND---TS 946
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
SF ++ +++ +MV+YCE + CRR + LE F E
Sbjct: 947 ISFEAKQ----IHMNNLLRMVNYCENVTDCRRTQQLEYFAE 983
>gi|427713763|ref|YP_007062387.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427377892|gb|AFY61844.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 730
Score = 331 bits (848), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 253/397 (63%), Gaps = 7/397 (1%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++ L+ +FG+ FR Q D I A L+ +D ++PTGGGKS+C+Q+PAL K GI LVVSP
Sbjct: 4 LEALKHYFGYEAFRPGQADIITASLNQQDVLAILPTGGGKSICFQLPALLKTGITLVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM +QV+ L++ GIA FL+ST + + +G+ ++LLYV PE + F
Sbjct: 64 LIALMLDQVVALQKNGIAATFLNSTLSAAEARGRIAAIMAGE--VKLLYVAPERLVSDSF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L+ IH ++ + +DEAHC+S WGHDFRP YR+LS LR P +P++ALTATA +
Sbjct: 122 TALLETIHQTVGISSIVVDEAHCVSEWGHDFRPDYRQLSRLRERFPTIPVIALTATATHR 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+ E L L+ P V +SFNRPNL+YEV K + ++L +K + I+YC+
Sbjct: 182 VRTDITEQLSLKKPFVHVASFNRPNLYYEVIEKSRGKVSLSELTGYIKET-EGSGIIYCM 240
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++L++ L+ GIS YHAGL+++ R+ +I Q++VATVAFGMGI++ D
Sbjct: 241 SRKQVEKLASELNENGISALPYHAGLSNETRTDHQTRFIRDDVQIMVATVAFGMGINKPD 300
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQSF 385
VR V H+++P+++E +YQESGRAGRD P++ L++ D ++ + FI +K + ++
Sbjct: 301 VRFVIHYDLPQTIEGYYQESGRAGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETNEPL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+R +++ + Q+ Y + + CRR +L FGE
Sbjct: 361 EDEQRIARQQL---RQIAAYADSTLCRRTTLLGYFGE 394
>gi|401827051|ref|XP_003887618.1| ATP-dependent DNA helicase RecQ [Encephalitozoon hellem ATCC 50504]
gi|392998624|gb|AFM98637.1| ATP-dependent DNA helicase RecQ [Encephalitozoon hellem ATCC 50504]
Length = 766
Score = 330 bits (847), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 174/397 (43%), Positives = 244/397 (61%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 229 LREVFKMKEFRMNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGITIVVSPLLS 288
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L EK I ++S + ++ ++E L S + ++ YVTPEL A G F
Sbjct: 289 LVQDQIRNLLEKDILALPINSNLSRTERSLVFEVLGSEELICKIFYVTPELIAKSGHFHD 348
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 349 VVSGLVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRARYPSVPIIALTATATKKVE 408
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 409 LDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIVSFVQTHFPDCCGIIYCTS 466
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 467 KKECEMISDRLKKY-MKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAFGMGIDKKDV 525
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 526 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQKQRQ 585
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
RE D ++ +CE + CRR ++L FGE+
Sbjct: 586 RE--------DLEAVIQFCENKTDCRRMQVLAHFGEK 614
>gi|430812018|emb|CCJ30545.1| unnamed protein product [Pneumocystis jirovecii]
Length = 704
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 175/426 (41%), Positives = 248/426 (58%), Gaps = 32/426 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLI 88
LR FG FR Q +AI+ L G D F + PTG GKS+CYQ+PA+ G+ +VVSPL+
Sbjct: 17 LRKVFGKPDFRGCQKEAIECALRGEDIFIIAPTGMGKSLCYQLPAIVVDHGVTIVVSPLL 76
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM NQV L K + L+ST +++ + +I EDL G P +RLLYVTPEL +T F +
Sbjct: 77 ALMNNQVDILCAKNLPAATLNSTTSIENRKRILEDLACGHPQVRLLYVTPELLSTENFRN 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
KL ++ G L+ IDEAHC+S WGHDFR Y+ LS LR P +PI+ALTATA KV+
Sbjct: 137 KLLNVYQHGELHRFVIDEAHCVSEWGHDFRKDYKLLSFLRKKYPKIPIMALTATATEKVR 196
Query: 209 KDVMESLCLQNPLVLK---SSFNRPNLFYEVRYKDLLDDAYADL---------------- 249
D+ + L L P LK F+R NL +EVR+K D Y D
Sbjct: 197 LDIAKILGLPAPPTLKVFIEPFSRKNLHFEVRFKSDGKDHYEDFRKFILSVYARKKKRLF 256
Query: 250 ---CSVLKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
+ + NG C I+Y +R TC+E++ L GI+ +YHAGL+ R
Sbjct: 257 LENKNFIDQNGGNYDIPVSICGIIYAKKRGTCEEVAERLKNDGINAQSYHAGLSSTMRDK 316
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
+ W + ++VAT+AFGMG+D++DVR V H+++ KSMEA+YQE+GRAGRD S+ +
Sbjct: 317 TMKLWYEGKIDIIVATIAFGMGVDKEDVRFVVHWDMSKSMEAYYQEAGRAGRDNKTSRCI 376
Query: 360 LYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILE 418
LYY +DR + +IL + + + + + E + +I+ F +V YCE + CR ++E
Sbjct: 377 LYYSREDRDKTRYILHQEKEQKKRKRES-EGNDLSNINSFEMLVKYCENVTKCRHLFLVE 435
Query: 419 SFGEQV 424
F E +
Sbjct: 436 YFSETI 441
>gi|307195272|gb|EFN77228.1| Bloom syndrome protein-like protein [Harpegnathos saltator]
Length = 1091
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 176/407 (43%), Positives = 243/407 (59%), Gaps = 17/407 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E L+K+ R FG FR QL AI A L G DCF LMPTGGGKS+CYQ+PAL G+
Sbjct: 393 HSQE-LLKIFRLKFGLYTFRPNQLQAINATLVGFDCFVLMPTGGGKSLCYQLPALLSTGL 451
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I LSS+ T + +Y +L +P+L++LYVTPE
Sbjct: 452 TVVISPLKSLILDQVQKLISLDIPAAQLSSSVTDKQAEAVYRELCKKEPALKILYVTPEK 511
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++A+ F + + ++ R LL IDEAHC+S WGHDFRP Y+KL LR P VP +AL
Sbjct: 512 ISASQKFCNTMTTLYERDLLTRFVIDEAHCVSQWGHDFRPDYKKLKCLRKNYPKVPTMAL 571
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+V+ D++ L + P SSFNRPNL Y + + K+ D+ A + + K
Sbjct: 572 TATATPRVRTDILHQLDMTKPKWFMSSFNRPNLRYSIISKKGKNCSDEVVAMIKTKFK-- 629
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ C IVYCL R C++ +A+L I +YHAGL D R++ WI V+ AT+
Sbjct: 630 -NVCGIVYCLSRKDCEDYAAHLKKNCIKALSYHAGLTDNQRNNCQGKWILDEIHVICATI 688
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ +VR V H +PKS+E +YQESGRAGRD + +L+Y D R+ ++
Sbjct: 689 AFGMGIDKPNVRYVIHAALPKSIEGYYQESGRAGRDGEIADCILFYNYADMHRIRKMIEM 748
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ S N Q T + + +MV +CE + CRR L FGE
Sbjct: 749 DNS-NPQVIRTH-------MDNLFKMVAFCENTTDCRRSLQLNYFGE 787
>gi|348580071|ref|XP_003475802.1| PREDICTED: Bloom syndrome protein-like [Cavia porcellus]
Length = 1405
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 183/423 (43%), Positives = 248/423 (58%), Gaps = 13/423 (3%)
Query: 6 LAMQSTSQT--QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
LA ++TSQ Q H KE ++K+ FG FR QL+AI A L G DCF LMPTG
Sbjct: 621 LASRNTSQERFQSLSFPHTKE-MMKIFHKKFGLHNFRTNQLEAINATLLGEDCFILMPTG 679
Query: 64 GGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123
GGKS+CYQ+PA PG+ +V+SPL +L+ +QV L I +L+ +T IY
Sbjct: 680 GGKSLCYQLPACVLPGVTIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQ 739
Query: 124 LDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGHDFRP Y+
Sbjct: 740 LSKKDPIIKLLYVTPEKVCASNRLISILENLYERKLLARFVIDEAHCVSQWGHDFRPDYK 799
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242
+++ LR P VP++ALTATA +VQ D++ L + P V SFNR NL Y V K
Sbjct: 800 RMNMLRQKFPSVPVMALTATANSRVQTDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPK 859
Query: 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
A+ L + K + I+YCL R CD ++ L G++ AYHAGL+D AR V
Sbjct: 860 KVAFDCLEWIRKHHPYDSGIIYCLSRWECDTMADTLQKDGLAALAYHAGLSDAARDEVQH 919
Query: 303 DWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
WI+ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+
Sbjct: 920 KWINQDGCQVICATIAFGMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLF 979
Query: 362 YGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESF 420
Y D R++ ++ + N + T ++ MV YCE + CRR ++L F
Sbjct: 980 YTYHDVTRLKRLIMMEKDGNRHTKETH-------FNNLYSMVHYCENITECRRIQLLAYF 1032
Query: 421 GEQ 423
GE
Sbjct: 1033 GEN 1035
>gi|383450034|ref|YP_005356755.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
gi|380501656|emb|CCG52698.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium indicum
GPTSA100-9]
Length = 731
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 246/403 (61%), Gaps = 25/403 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG QF+ Q + +++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LYKELKKYFGFNQFKGLQEQVVTSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A L+S+ T ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLGSEMGVA-HVLNSSLTKTEINQVKADIVSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ L ++ L+ VAIDEAHCIS WGHDFRP YR L ++ L DVPI+ LTA
Sbjct: 125 TKEEYIQFLNEVK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDVPIIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + V K+SFNRPNL+YEVR K + AD+ +K +
Sbjct: 181 TATPKVQEDILKNLDMPDANVFKASFNRPNLYYEVRPK--TKNVEADIIRFIKQHKGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ +VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPVAE 358
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
++ ++V Y E S RRK +L FGE+
Sbjct: 359 QEIGYAL-----------LQEVVAYAETSMSRRKYLLHYFGEE 390
>gi|356533550|ref|XP_003535326.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent DNA helicase Q-like
1-like [Glycine max]
Length = 612
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 176/395 (44%), Positives = 245/395 (62%), Gaps = 16/395 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A L+ +D F LMPTGGGKS+CYQ+PA +PG+ +VVSPL++L+++
Sbjct: 206 FGNRTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQD 265
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT T + ++L KPS +LLYVTPE + F+ LK
Sbjct: 266 QIITLNLKFGIPSTFLNSQQTASQVTAVLQELRKDKPSCKLLYVTPERIAGNQSFLEILK 325
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR L SL+ + PDVP++ALTATA V++D+
Sbjct: 326 FMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKLHFPDVPVMALTATATHAVREDI 385
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
+++L + + LVL+ SF+RPNL YEV + K+ L L + + C IVYCL ++
Sbjct: 386 LKALRIPHALVLERSFDRPNLKYEVIAKTKEPLKQLGQLLIDRFR---NQCGIVYCLSKS 442
Query: 270 TCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C E+S +L+ I YHAGL + R +V W +V AT+AFGMGID+ DVR
Sbjct: 443 ECVEVSKFLNEKCKIKTVYYHAGLAARQRVAVQKKWYDGEVHIVCATIAFGMGIDKPDVR 502
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H + KS+E++YQESGRAGRD PS + Y D R+ ++ Q +SF T
Sbjct: 503 FVIHNTMSKSIESYYQESGRAGRDNFPSVCIALYQKKDFSRVVCMIRNGQGYKKESFKTA 562
Query: 389 ERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
+KK M +YCE + CRR+ +L+ FGE
Sbjct: 563 MAQAKK-------MQEYCEIKAECRRQTLLKHFGE 590
>gi|352085481|ref|ZP_08953101.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
gi|351681902|gb|EHA65016.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 2APBS1]
Length = 612
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 248/400 (62%), Gaps = 17/400 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + + LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +
Sbjct: 5 KASALDLLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGI 64
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L+E G+A +L+S+ + + + ++ L +G+ L LLYV PE
Sbjct: 65 VVSPLIALMQDQVDALREAGVAAAYLNSSLSAEAQREVERQLLAGE--LNLLYVAPERLL 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L+ I + L AIDEAHC+S WGHDFRP YR+L+ L P P +ALTAT
Sbjct: 123 TPRFLGLLESIE----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPHAPRIALTAT 178
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P+ +++++E L LQ+ SSF+RPN+ Y V L +A L L+ + I
Sbjct: 179 ADPRTREEIVERLSLQHARQFVSSFDRPNIGYRV---GLRHNAKRQLTEFLQGHQGESGI 235
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGI
Sbjct: 236 VYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGI 295
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S +
Sbjct: 296 DKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADE 355
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ R++ ++ Y E +GCRR+ +L +FGE
Sbjct: 356 RKRVERQK--------LESLLAYAEATGCRRQLLLGAFGE 387
>gi|303390001|ref|XP_003073232.1| ATP-dependent DNA helicase [Encephalitozoon intestinalis ATCC
50506]
gi|303302377|gb|ADM11872.1| ATP-dependent DNA helicase [Encephalitozoon intestinalis ATCC
50506]
Length = 762
Score = 330 bits (847), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 171/397 (43%), Positives = 244/397 (61%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL G+ +VVSPL++
Sbjct: 225 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGVTIVVSPLLS 284
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q++ L +K I ++S + + ++E L S + ++ YVTPEL A G F
Sbjct: 285 LVQDQILNLLQKDILALPINSNLSRTERRLVFEALGSDELICKIFYVTPELIAKSGHFHE 344
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 345 VVSGLVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRRRYPSVPIIALTATATKKVE 404
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 405 LDILENLGIRGCETFKMSFNRANLRYEVRAK--TSTVELDIVSFVQTHFPDCCGIIYCTS 462
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 463 KKECEMISEKLKKH-MKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAFGMGIDKKDV 521
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 522 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQKQRQ 581
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+E D ++ +CE + CRR ++L FGE+
Sbjct: 582 KE--------DLEAVIQFCENKTDCRRMQVLAHFGEK 610
>gi|37522198|ref|NP_925575.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
gi|35213198|dbj|BAC90570.1| ATP-dependent DNA helicase [Gloeobacter violaceus PCC 7421]
Length = 746
Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 252/401 (62%), Gaps = 13/401 (3%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+ + L + L+ HFGH +FR Q ++ ++G D LMPTGGGKS+ YQ+PAL PG+
Sbjct: 14 DDQKLGEALKRHFGHERFRPGQRRIVELAIAGHDQLILMPTGGGKSLTYQLPALLLPGLT 73
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLIALM +QV L+E GIA FL+ST +T+ + + G+ ++LLY++PE
Sbjct: 74 VVVSPLIALMHDQVDRLRENGIAATFLNSTLAAGERTRREQAIAQGR--MKLLYLSPERL 131
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ ++ L+ + +G L+L+A+DEAHC+S WGHDFRP YR+L+++R +P LALTA
Sbjct: 132 LSEECLAFLEYVQRQGGLSLLAVDEAHCVSEWGHDFRPEYRQLAAVRERFAALPTLALTA 191
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V++D++ L L++P + +SF+RPNL Y V KD AYA+L L+ A
Sbjct: 192 TATERVRQDILVQLKLRDPHIHIASFDRPNLHYAVLAKD--KGAYAELLGRLRRLDGASA 249
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R + L+ L A G++ YHAG+ + RS ++ V+VATVAFGMG
Sbjct: 250 IVYCQSRRAVEALAERLVADGLNALPYHAGMAAEMRSRHQTQFLRDDAPVLVATVAFGMG 309
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I + DVR V H+ +P+++E +YQESGRAGRD P+ +L++ DR ++E+++++ +
Sbjct: 310 IAKPDVRAVFHYELPRNLEGYYQESGRAGRDGQPADCVLFFSPGDRAKIEYLVAQKSDPH 369
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q + S +QM+ Y E + CRR+ +L FGE
Sbjct: 370 EQRLAR---------SQLAQMLAYAESTVCRRRILLGYFGE 401
>gi|396081744|gb|AFN83359.1| ATP-dependent DNA helicase [Encephalitozoon romaleae SJ-2008]
Length = 765
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 173/397 (43%), Positives = 245/397 (61%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 228 LREVFKMKEFRMNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYEGITIVVSPLLS 287
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L +K I ++S + ++ ++E L S + ++ YVTPEL A G F
Sbjct: 288 LVQDQIRNLLQKDILALPINSNLSRNERSLVFEALRSDELICKIFYVTPELIAKSGHFHD 347
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ ++ RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 348 VVSELVRRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSIRIRYPSVPIIALTATATKKVE 407
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 408 LDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIVSFVQTHFPDCCGIIYCTS 465
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 466 KKECEMISDKLKKY-MKTAFYHAGLSKNERNSVQEKWNKGEFKVIVATIAFGMGIDKKDV 524
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 525 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQKQRQ 584
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
RE D ++ +CE + CRR ++L FGE+
Sbjct: 585 RE--------DLEAVIQFCENKTDCRRMQVLGHFGEK 613
>gi|284040794|ref|YP_003390724.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
gi|283820087|gb|ADB41925.1| ATP-dependent DNA helicase RecQ [Spirosoma linguale DSM 74]
Length = 736
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 167/393 (42%), Positives = 246/393 (62%), Gaps = 19/393 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG++QFR +Q I ++L+GR+ F +MPTG GKS+CYQ+PA+ G +V+SPLIA
Sbjct: 16 LKEIFGYSQFRGEQEAIIYSILAGRNTFVIMPTGAGKSLCYQLPAIVSEGTAVVISPLIA 75
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST + K+ +D +G +L+LLY+ PE +
Sbjct: 76 LMKNQVDQLNAFGINAQFLNSTLSKAEMNKVKKDTLNG--TLKLLYIAPESLTKEENLDF 133
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LKK + ++ VAIDEAHCIS WGHDFRP YRK+ + + + ++P++ALTATA PKVQ+
Sbjct: 134 LKKAN----ISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGNLPVIALTATATPKVQQ 189
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ ++L +++ + K+SFNR NL+YE+R K DA L +K N I+YCL R
Sbjct: 190 DIQKNLQMEDANLYKTSFNRKNLYYEIRPKV---DAKKQLIKYIKQNKGKSGIIYCLSRK 246
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T +E++ L + YHAGL+ R + D +++ V+ AT+AFGMGID+ DVR
Sbjct: 247 TVEEIAELLRVNDVKALPYHAGLDPVTRMNNQDAFLNEDVDVICATIAFGMGIDKPDVRF 306
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H++ PKS+E +YQE+GRAGRD L L++Y DD ++E K ++ E
Sbjct: 307 VIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYSFDDIVKLE--------KFNKDKPVTE 358
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R + K + ++MV Y CRR+++L FGE
Sbjct: 359 RDNAKHL--LTEMVSYANLGVCRRRQLLGYFGE 389
>gi|365875470|ref|ZP_09414998.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442588734|ref|ZP_21007544.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
gi|365756729|gb|EHM98640.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis Ag1]
gi|442561492|gb|ELR78717.1| ATP-dependent DNA helicase RecQ [Elizabethkingia anophelis R26]
Length = 735
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 242/398 (60%), Gaps = 24/398 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG F+ Q I ++L G D F LMPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFTTFKGYQEQIISSLLEGSDVFVLMPTGGGKSLCYQLPALMSEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV + E+G+A SS Q KT + +D+ +G+ +LLYV PE
Sbjct: 72 LMKNQVDAVNGLSSEEGVAHVLNSSLNKTQTKT-VMDDIRNGRT--KLLYVAPESLIKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ K++ ++ AIDEAHCIS WGHDFRP YR L S+ + + DVP++ALTATA P
Sbjct: 129 YIDFFKEVP----ISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N LV K SFNRPNLFYEVR K +D ++ +KA IVYC
Sbjct: 185 KVQDDIQKTLGMTNALVYKESFNRPNLFYEVRPKVNID---KEIVKFIKAQNGKSGIVYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L G++ YHAGL+ K R + D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRRKVEEFAQLLQVNGLNALPYHAGLDAKTRVANQDKFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H++IPKS+E++YQE+GRAGRD + +Y D ++E L++ +
Sbjct: 302 DVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCIAFYDPKDIEKLEKFLAQ------KPV 355
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
S RE + +++V Y E S RR+ +L FGE+
Sbjct: 356 SEREI----GLQLLNEVVGYVETSMSRRQYLLYYFGEK 389
>gi|359474777|ref|XP_002267000.2| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Vitis
vinifera]
Length = 711
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 243/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + G+ LVVSPL++L+++
Sbjct: 85 FGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST + + + IY+ L+ G L++LYVTPE ++ + F+SKL+K
Sbjct: 145 QVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEKISKSKRFVSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L++IDEAHC S WGHDFRP Y+ L L+ PDVP++ALTATA KVQ D+M
Sbjct: 205 CHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPVVALTATATKKVQNDLM 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ IVYC R
Sbjct: 265 EMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEYIQESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ LLY+ D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E S +++ D +V YC+ CRR F E + C
Sbjct: 432 ENSGLQNLYD---IVQYCQSKRECRRNAFFRHFAEPLQDC 468
>gi|374375555|ref|ZP_09633213.1| ATP-dependent DNA helicase RecQ [Niabella soli DSM 19437]
gi|373232395|gb|EHP52190.1| ATP-dependent DNA helicase RecQ [Niabella soli DSM 19437]
Length = 751
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 174/398 (43%), Positives = 243/398 (61%), Gaps = 26/398 (6%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92
HFG +F+ Q I+++LSG+D F +MPTGGGKS+CYQ+PA+ G+ ++VSPLIALM+
Sbjct: 33 HFGFQKFKGNQEAIIESLLSGKDTFVIMPTGGGKSLCYQLPAVIMEGVAIIVSPLIALMK 92
Query: 93 NQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG--F 146
NQV G FL+ST + ++++DL +GK +LLYV PE LT F
Sbjct: 93 NQVDLVRGYNSNDEIAHFLNSTLNKKEIKEVHDDLLTGKT--KLLYVAPETLTKQENLTF 150
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAP 205
S LK ++ A+DEAHCIS WGHDFRP YR+L + N + P+ ++ALTATA P
Sbjct: 151 FSDLK-------ISFFAVDEAHCISEWGHDFRPEYRRLREMMNQINPEAAVIALTATATP 203
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D++++L L++ + SSFNR NL+YE+ K + +K + I+Y
Sbjct: 204 KVQSDIVKNLALKDANIFISSFNRDNLYYEIVPKVSKKQTNESMVRFIKGMKNKSGIIYT 263
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T +EL+ L A GI AYHAGL+ K R+ D +++ QV+VAT+AFGMGID+
Sbjct: 264 LNRKTTEELADILMANGIKAVAYHAGLDSKLRAERQDQFLNEDVQVIVATIAFGMGIDKP 323
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
D+R V H+NI KS+E +YQE+GRAGRD L K LLYY D ++E ++ +
Sbjct: 324 DIRFVIHYNISKSIENYYQETGRAGRDGLEGKCLLYYSHKDVSKLEHLM------RDKPL 377
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
S RE ++ ++ V + E CRRK IL FGEQ
Sbjct: 378 SEREVGAQL----INETVAFAESGVCRRKVILSYFGEQ 411
>gi|332238724|ref|XP_003268551.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein [Nomascus
leucogenys]
Length = 1417
Score = 330 bits (846), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGD 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+ +SPL +L+ + V L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TIEISPLRSLIVDPVQKLTSLDIPATYLTGDKTDSETTNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNILRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1048
>gi|148236484|ref|NP_001079095.1| Bloom syndrome protein homolog [Xenopus laevis]
gi|17366056|sp|Q9DEY9.1|BLM_XENLA RecName: Full=Bloom syndrome protein homolog; Short=xBLM; AltName:
Full=RecQ helicase homolog
gi|11120568|gb|AAG30928.1|AF307841_1 Bloom's syndrome-like protein [Xenopus laevis]
Length = 1364
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/406 (43%), Positives = 239/406 (58%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+P PG+
Sbjct: 603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGV 661
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 662 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEK 721
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S ++ ++ R LL IDEAHC+S WGHDFRP Y++L+ LR VP++AL
Sbjct: 722 VCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMAL 781
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+KD++ L + P + SFNR NL YEV K A + + K + +
Sbjct: 782 TATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPND 841
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL D R V WI+ QV+ AT+AF
Sbjct: 842 SGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAF 901
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++ +
Sbjct: 902 GMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEK 961
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
NS + T ++ MV YCE CRR ++L FGE
Sbjct: 962 DGNSHTKQTH-------FNNLYSMVHYCENVVECRRMQLLSYFGEN 1000
>gi|223940604|ref|ZP_03632448.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
gi|223890722|gb|EEF57239.1| ATP-dependent DNA helicase RecQ [bacterium Ellin514]
Length = 728
Score = 330 bits (846), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 171/406 (42%), Positives = 245/406 (60%), Gaps = 20/406 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG + FR Q + I L+G+D F L+PTGGGKS+C+Q+PAL +PG+ +V+S
Sbjct: 12 LLPTLKQYFGFSSFRPLQEEIILDTLAGKDVFALLPTGGGKSLCFQLPALVRPGLTVVIS 71
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L G FL+S+ T L G+ RLLYV PE G
Sbjct: 72 PLIALMKDQVDALTASGAPATFLNSSLEAGESTPRLRGLHKGE--FRLLYVAPERLMLSG 129
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ L++ + +NL AIDEAHC+S WGHDFRP YR +S LR P+VP +ALTATA
Sbjct: 130 FLEDLRRWN----VNLFAIDEAHCVSEWGHDFRPEYRAISKLRELFPEVPFMALTATATE 185
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V++D++ +L L+ P + +SFNRPNL Y V K AY S ++A IVYC
Sbjct: 186 RVREDIIRALSLREPQIFVASFNRPNLTYRVHAKS---GAYEQTLSFIRARPRESGIVYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R T + ++ L+ G+S YHAGL + RS + ++ +VV AT+AFGMGI++
Sbjct: 243 HSRKTAESVAQKLNEDGVSARPYHAGLPGEERSRNQELFLRDEVRVVCATIAFGMGINKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+++PK++E +YQE+GRAGRD LPS+ LL + D + +++ + Q
Sbjct: 303 NVRFVIHYDLPKNVEGYYQETGRAGRDGLPSECLLLFSPGDVVKQTGFINEKTDPHEQQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ--VLGCVA 429
+ RE+ QMV Y E + CRR +L+ FGE+ V C A
Sbjct: 363 A-REQ--------LQQMVHYAEIASCRRASLLDYFGEEFPVANCEA 399
>gi|126179265|ref|YP_001047230.1| ATP-dependent DNA helicase RecQ [Methanoculleus marisnigri JR1]
gi|125862059|gb|ABN57248.1| ATP-dependent DNA helicase, RecQ family [Methanoculleus marisnigri
JR1]
Length = 419
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/396 (43%), Positives = 240/396 (60%), Gaps = 16/396 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FGH+ F Q + I+ +L+GRD ++ TGGGKS+CYQ+PAL G+VLV+SPLI
Sbjct: 7 ILQRYFGHSAFNLYQREIIEDLLAGRDVLAVLATGGGKSLCYQVPALVGDGVVLVISPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L+ +G+ E L+S+ + +I +L G +++LYV+PE F+
Sbjct: 67 ALMKDQVDDLQARGVGAEALNSSGSYAATRRILSELKEGL--IQILYVSPEKAVGEDFID 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + + L+A+DEAHCIS WGH FRP YR LS L+ P VP++ALTATA P V+
Sbjct: 125 LMASLP----VTLIAVDEAHCISMWGHQFRPEYRSLSVLKERFPGVPMVALTATATPDVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ L L +P V SFNR NL Y V K+ +DAY L + L+ IVY R
Sbjct: 181 DDIARQLNLSDPSVYVGSFNRENLRYVVVGKE--EDAYERLRAYLRGRRGDAGIVYVATR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ L+A L AGGI YHAG+ AR D +I + VV AT AFGMGID+ DVR
Sbjct: 239 DGAETLAARLRAGGIPALPYHAGMTAAARRETQDRFIGGKVPVVCATSAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PK++EA+YQESGRAGRD S +LYY +D RR+ + ++ + Q
Sbjct: 299 FVVHYDMPKTLEAYYQESGRAGRDGKESDCILYYSDEDARRLRSFIDRDLASEFQ----- 353
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
K + S MVDYC + CRRK +L FGE++
Sbjct: 354 ---RKVARSKLQSMVDYCTTTECRRKALLGYFGERI 386
>gi|260062261|ref|YP_003195341.1| ATP-dependent DNA helicase [Robiginitalea biformata HTCC2501]
gi|88783823|gb|EAR14994.1| putative ATP-dependent DNA helicase [Robiginitalea biformata
HTCC2501]
Length = 733
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 178/401 (44%), Positives = 243/401 (60%), Gaps = 28/401 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q D I+ ++ GRD F +MPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFSQFKGLQEDVIKNIVQGRDTFVIMPTGGGKSLCYQLPALIGEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +VK + ED+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGVSDNDGVAHVLNSSLTKGEVKA-VKEDITSG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ L+ + L+ VAIDEAHCIS WGHDFRP YR L S+ + L D+PI+ALTATA
Sbjct: 129 YVDFLQGV----TLSFVAIDEAHCISEWGHDFRPEYRNLRSIIDRLGDDIPIIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + V K+SFNRPNL+YEV+ K + AD+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGIPEAEVFKASFNRPNLYYEVQPK--TKNVDADIIRFVKKNAGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 303 PDVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + +++ I + ++V Y E S RRK IL FGE+
Sbjct: 351 FMAGKPVAEQEIGNALLQEIVAYAETSVSRRKFILHYFGEE 391
>gi|170042287|ref|XP_001848863.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
gi|167865792|gb|EDS29175.1| ATP-dependent DNA helicase hus2 [Culex quinquefasciatus]
Length = 1437
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 241/403 (59%), Gaps = 10/403 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L + R FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V
Sbjct: 682 DTLQIVFRETFGLRSFRPNQLQVINATLLGHDCFVLMPTGGGKSLCYQLPAIMTEGVTIV 741
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL +L+ +QV L I LS + + KIY DL S KP L+LLYVTPE ++
Sbjct: 742 VSPLKSLIHDQVNKLGSLDIPAAHLSGEVSYADQQKIYADLSSPKPVLKLLYVTPEKISS 801
Query: 144 PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G F + L +++ L IDEAHC+S+WGHDFRP Y+KLS LR P +P++ALTAT
Sbjct: 802 SGRFQNILTELYRMKQLGRFVIDEAHCVSAWGHDFRPDYKKLSVLREQFPTIPVMALTAT 861
Query: 203 AAPKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
A P+V+ DV++ L L +N SFNRPNL Y +R K + + + K
Sbjct: 862 ANPRVRIDVLKQLGLGRNTKWFLCSFNRPNLKYIIRPKQGVATKAEIMELIKKKFPRATG 921
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL + CD+LSA + GI +YHAGL D R + DWI+ + +VV AT+AFGMG
Sbjct: 922 IVYCLSKKDCDQLSAEMRCAGIKAKSYHAGLGDAEREATQKDWITDKIKVVCATIAFGMG 981
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H ++PKS+E +YQE+GRAGRD + +L+Y D R ++ + +
Sbjct: 982 IDKPDVRYVIHHSMPKSIEGYYQEAGRAGRDGELATCVLFYNYSDMLRYRKMMDHD---S 1038
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
S F ++ + + +MV+YCE + CRR + L+ F E
Sbjct: 1039 SIPFEAKQ----VHLHNLFRMVNYCENVADCRRTQQLDYFAEH 1077
>gi|296085510|emb|CBI29242.3| unnamed protein product [Vitis vinifera]
Length = 710
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 243/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + G+ LVVSPL++L+++
Sbjct: 85 FGISTYRANQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST + + + IY+ L+ G L++LYVTPE ++ + F+SKL+K
Sbjct: 145 QVMGLAALGIPAYMLTSTTSKEDEKFIYKALEKGDGDLKILYVTPEKISKSKRFVSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L++IDEAHC S WGHDFRP Y+ L L+ PDVP++ALTATA KVQ D+M
Sbjct: 205 CHHSGCLSLISIDEAHCCSQWGHDFRPDYKNLGILKTQFPDVPVVALTATATKKVQNDLM 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ IVYC R
Sbjct: 265 EMLHIPKCIKFVSTVNRPNLFYMVREKSSVGRVVIDEIAEYIQESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGISADYYHADMDVNARERVHLRWSNSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ LLY+ D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E S +++ D +V YC+ CRR F E + C
Sbjct: 432 ENSGLQNLYD---IVQYCQSKRECRRNAFFRHFAEPLQDC 468
>gi|335297361|ref|XP_003358019.1| PREDICTED: ATP-dependent DNA helicase Q5 [Sus scrofa]
Length = 451
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/409 (43%), Positives = 252/409 (61%), Gaps = 12/409 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 5 PFDPERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 64
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +V+SPLIAL+++QV L I L+S + Q + ++ DL+ KP +LLY+
Sbjct: 65 AKGITIVISPLIALIQDQVDHLLALKIHVCSLNSKLSAQERKELLSDLEQEKPRTKLLYI 124
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F LK + +R LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 125 TPEMAASASFQPTLKSLLARHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 184
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LK
Sbjct: 185 VALTATATLQVQEDVFAALHLKQPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 244
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LSA G++ AYHAGL R+ V ++W+
Sbjct: 245 ALGQKADKGLSGCGIVYCRTREACEQLAIELSARGVNAKAYHAGLKAAERTLVQNEWMEG 304
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 305 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGRPSWCRLYYSRNDR 364
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKI 416
++ F++ K +K + + S K ++S F +V +CE SG R +
Sbjct: 365 DQVSFLIRKEVAKLQEKRGNKA-SDKAALSAFDALVAFCEESGRSRAAL 412
>gi|319954189|ref|YP_004165456.1| ATP-dependent DNA helicase recq [Cellulophaga algicola DSM 14237]
gi|319422849|gb|ADV49958.1| ATP-dependent DNA helicase RecQ [Cellulophaga algicola DSM 14237]
Length = 733
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 245/401 (61%), Gaps = 28/401 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG ++F+ Q I ++L G++CF +MPTGGGKS+CYQ+PAL + G ++VSPLIA
Sbjct: 12 LKKYFGFSEFKGLQESVITSILEGKNCFVVMPTGGGKSLCYQLPALMQEGTAIIVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS ++K ++ D+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSEHGIAHVLNSSLTKTEIK-QVKSDITSG--ITKLLYVAPESLTKDE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ L+ + L+ VA+DEAHCIS WGHDFRP YR L S+ + L D +PI+ LTATA
Sbjct: 129 YVEFLQSVK----LSFVAVDEAHCISEWGHDFRPEYRNLRSIISRLDDTIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + + K+SFNRPNLFYEVR K + AD+ +K N I+Y
Sbjct: 185 PKVQEDIIKNLGITDADLFKASFNRPNLFYEVRPK--TQNIEADIIRFVKQNTGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEGVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I + +MV Y E S RRK IL FGE
Sbjct: 351 FMSGKPVAEQEIGNALLQEMVAYAETSMSRRKFILHYFGEH 391
>gi|291410501|ref|XP_002721547.1| PREDICTED: Bloom syndrome protein [Oryctolagus cuniculus]
Length = 1414
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 241/406 (59%), Gaps = 11/406 (2%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H K+ ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 653 HTKD-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACISPGV 711
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 712 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEAASIYLQLSKKDPIIKLLYVTPEK 771
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 772 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 831
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 832 TATANPRVQKDILTQLKIVRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 892 SGIIYCLSRRECDTMADTLQKDGLAALAYHAGLSDSARDEVQHKWINQDGCQVICATIAF 951
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 952 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLILMEK 1011
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
N + T ++ MV YCE + CRR ++L FGE
Sbjct: 1012 DGNQHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGEN 1050
>gi|449517902|ref|XP_004165983.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/393 (44%), Positives = 243/393 (61%), Gaps = 13/393 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A S +DCF LMPTGGGKS+CYQ+PA +PG+ +V+SPL++L+++
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
Q++ L K GI FL+S QT + ++L KPS +LLYVTPE AT F+ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIATQSFLEILRF 315
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H + L +DEAHC+S WGHDFRP YR L L+ PDVP++ALTATA V++DV+
Sbjct: 316 MHMKKQLASFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFPDVPVMALTATATHSVREDVL 375
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
++L + + L+L+ SF+RPNL YEV K + L +K + C IVYCL ++ C
Sbjct: 376 KALRIPHALILERSFDRPNLKYEVVCK--TKEPLVQLGQFIKERFKNQCGIVYCLSKSEC 433
Query: 272 DELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
E+S L+ I A YHAGL + R V W Q+V AT+AFGMGID+ DVR V
Sbjct: 434 VEVSETLNKKFKIKAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDVRFV 493
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H + KS+E++YQESGRAGRD P+ ++ Y D R+ +L Q S+SF
Sbjct: 494 IHNTMSKSIESYYQESGRAGRDGYPASCIVLYQKKDFSRVVCMLRNAQGFKSESF----- 548
Query: 391 SSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
K S+S +M +CE CRR+ +L+ FGE
Sbjct: 549 --KMSMSQGKKMQQFCELKDQCRRQMLLQHFGE 579
>gi|19074536|ref|NP_586042.1| ATP-DEPENDENT DNA HELICASE [Encephalitozoon cuniculi GB-M1]
gi|19069178|emb|CAD25646.1| ATP-DEPENDENT DNA HELICASE [Encephalitozoon cuniculi GB-M1]
Length = 766
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 173/397 (43%), Positives = 243/397 (61%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 229 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLS 288
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L +KGI ++S + + +++ L + ++ YVTPEL A G F
Sbjct: 289 LVQDQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYVTPELIAKSGHFHD 348
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 349 VLSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE 408
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 409 MDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIASFVQTHFPDCCGIIYCTS 466
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 467 KKECEMISEKLGKY-MGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKDV 525
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 526 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQKQRQ 585
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
RE D ++ +CE + CRR ++L FGE+
Sbjct: 586 RE--------DLEAVIQFCENKTDCRRMQVLAHFGER 614
>gi|348506232|ref|XP_003440664.1| PREDICTED: Bloom syndrome protein homolog [Oreochromis niloticus]
Length = 1403
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/408 (44%), Positives = 247/408 (60%), Gaps = 17/408 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA G+
Sbjct: 642 HSQE-MMKIFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSLGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+VVSPL +L+ +QV L I LS ++ ++IY L P ++LLYVTPE
Sbjct: 701 TVVVSPLKSLIVDQVQKLTTLDIPATSLSGDKSDSEASRIYMQLSRKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
L+A+ +S L+ ++ RGLL IDEAHC+S WGHDFRP Y+KL LR P+V ++AL
Sbjct: 761 LSASNRLISALQNLYERGLLARFIIDEAHCVSQWGHDFRPDYKKLHELRQKFPNVAMMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN- 256
TATA P+VQKD++ L + P V SFNR NL Y V + +D+ D S +K +
Sbjct: 821 TATATPRVQKDILNQLNMSRPQVFTMSFNRTNLKYAVLPKKPKKVDE---DCTSWIKKHY 877
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVAT 315
IVYCL R CD ++ L G+S +YHAGL+D R V WI+ QV+ AT
Sbjct: 878 PRDSGIVYCLSRNDCDAMAESLQRAGLSALSYHAGLSDSDREYVQSKWINQDGCQVICAT 937
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D +R++ I+S
Sbjct: 938 IAFGMGIDKPDVRYVIHASLPKSMEGYYQESGRAGRDGEISHCILFYSYTDVQRIKRIIS 997
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
++ + + +T ++ MV +CE CRR ++L FGE
Sbjct: 998 MDREGDRHTKATH-------YNNLHSMVHFCENVMECRRIQLLAYFGE 1038
>gi|118489987|gb|ABK96790.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 617
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 243/402 (60%), Gaps = 30/402 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ +DCF LMPTGGGKS+CYQ+PA KPG+ +V+SPL++L+++
Sbjct: 211 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 270
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT I ++L KPS +LLYVTPE + P F+ LK
Sbjct: 271 QIITLNLKFGIRATFLNSQQTSAQAAAILQELRKDKPSCKLLYVTPERIAGNPAFLEILK 330
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP Y++L L+ P VP++ALTATA V++D+
Sbjct: 331 CLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSVREDI 390
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+++L + LVL++SF+RPNL YEV K DLL D + + C I
Sbjct: 391 LKTLRIPGALVLETSFDRPNLKYEVIGKTKESLKQLGDLLRDRFK----------NQCGI 440
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C E+S +L+ I YHAGL + R V W + +V AT+AFGMG
Sbjct: 441 VYCLSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMG 500
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD P+ + Y D R+ +L Q
Sbjct: 501 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYK 560
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
+SF K +++ +M YCE + CRR+ +LE FGE
Sbjct: 561 RESF-------KPAMAQAQKMKSYCELKAECRRQVLLEHFGE 595
>gi|294495880|ref|YP_003542373.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
gi|292666879|gb|ADE36728.1| ATP-dependent DNA helicase RecQ [Methanohalophilus mahii DSM 5219]
Length = 599
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/390 (42%), Positives = 245/390 (62%), Gaps = 18/390 (4%)
Query: 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92
+FG+ FR Q + IQ VL+ +D F LMPTGGGKS+CYQ+P+L G+ +VVSPLI+LM+
Sbjct: 8 YFGYDTFRPLQENIIQDVLNKKDVFVLMPTGGGKSLCYQLPSLLMEGVTVVVSPLISLMK 67
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
+QV L GIA +++ST + + + L GK L LLYV PE A P + L K
Sbjct: 68 DQVDRLLSHGIAAAYMNSTLDNSEMSHVKDSLIRGK--LDLLYVAPERLAMPSTLKLLAK 125
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ +NL A+DEAHCIS WGHDFRP YRKL +LR+ P+VP++ALTATA P V +D+
Sbjct: 126 VN----VNLFAVDEAHCISQWGHDFRPEYRKLGALRSGFPNVPLIALTATATPAVARDIT 181
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272
+ L + +SFNR NL+YEV+ + +A + S L+++ ++C I+YC R + +
Sbjct: 182 KQLNMVRSEKYVASFNRSNLYYEVKSGE---NADQQITSYLRSHPESCGIIYCQTRKSVE 238
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
L+ L G++ A YHAG++D+ R + ++ +VVVATVAFGMGID+ +VR V H
Sbjct: 239 GLAGRLKKLGVNAAFYHAGMSDELRHRAQEKFLDGTIRVVVATVAFGMGIDKSNVRFVMH 298
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
+++P +E++YQ++GR GRD P +L++ D + ++ + + SK +
Sbjct: 299 YDLPADLESYYQQTGRGGRDGQPCDCILFFKRGDWYKQQYFIEQMSSKKEREI------- 351
Query: 393 KKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++S M+DYCE CRRK +LE FGE
Sbjct: 352 --ALSKLRHMMDYCESVTCRRKILLEYFGE 379
>gi|373111502|ref|ZP_09525757.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|423131855|ref|ZP_17119530.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|423135590|ref|ZP_17123236.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|423330145|ref|ZP_17307945.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
gi|371640169|gb|EHO05774.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 10230]
gi|371640694|gb|EHO06290.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 101113]
gi|371640856|gb|EHO06450.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 12901]
gi|404602617|gb|EKB02313.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CCUG 3837]
Length = 731
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 245/403 (60%), Gaps = 25/403 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG +QF+ Q D +++++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A L+S+ T ++ ED+ SG +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSSEHGVA-HVLNSSLTKTEIAQVKEDIKSG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++S L+ L+ VAIDEAHCIS WGHDFRP YR L ++ L D+PI+ LTA
Sbjct: 125 TKEEYVSFLQGEK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRSLGDIPIIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + N K+SFNRPNLFYE+R K + D+ +K +
Sbjct: 181 TATPKVQEDILKNLEIPNANTFKASFNRPNLFYEIRPK--TKNVETDIIRFIKQHQGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMAGKPVAE 358
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
++ ++V Y E S RRK IL FGE+
Sbjct: 359 QEIGYAL-----------LQEVVAYAETSMSRRKFILHYFGEE 390
>gi|302811147|ref|XP_002987263.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
gi|300144898|gb|EFJ11578.1| hypothetical protein SELMODRAFT_125799 [Selaginella moellendorffii]
Length = 711
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/400 (43%), Positives = 242/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + FR Q + + A++S ++ +M GGGKS+CYQ+PAL +PGI LVVSPL++L+++
Sbjct: 73 FGISTFRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALLRPGIALVVSPLLSLIQD 132
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
QV+GL G++ L+ST + + + +IY L+ G +LR+LYVTPE A + FMSKL+K
Sbjct: 133 QVMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEK 192
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+LVAIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA +VQ+D+
Sbjct: 193 CNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQ 252
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKAN--GDTCAIVYCLERT 269
E L + SS NRPNLFYEVR K + D D+ +K + IVYC R
Sbjct: 253 EMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRK 312
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L IS A YHA ++ R++V W S++ QV+V TVAFGMGI++ DVR
Sbjct: 313 ECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRF 372
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQSFSTR 388
V H + KS+E +YQESGRAGRD LPS+ +LY+ D R + S+N
Sbjct: 373 VIHHTLSKSLETYYQESGRAGRDGLPSRCVLYFRPADVPRQSCMVFSEN----------- 421
Query: 389 ERSSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQVLGC 427
+ + M YC+ CRR + F EQV C
Sbjct: 422 -----TGLQNLYAMARYCQSKQRCRRAAFFQYFAEQVQEC 456
>gi|375109707|ref|ZP_09755949.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
gi|374570229|gb|EHR41370.1| ATP-dependent DNA helicase [Alishewanella jeotgali KCTC 22429]
Length = 605
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 167/399 (41%), Positives = 241/399 (60%), Gaps = 18/399 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L+ +L+ FG++ +R+ Q + I AVL GRDCF L+PTGGGKS+CYQ+PAL PG+ LV
Sbjct: 3 EQLLAVLKQSFGYSSWRNGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA +++S+ + + + L G+ L+LLYV PE
Sbjct: 63 VSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGE--LKLLYVAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L+++ ++L AIDEAHCIS WGHDFRP Y LS L+ P VP +ALTATA
Sbjct: 121 PSFLERLQEVG----VSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPGVPFIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P Q+D+++ L L NP + + SF+RPN+ Y V+ K L + LK + I+
Sbjct: 177 DPATQQDILQQLGLSNPYIHRGSFDRPNIRYTVQEK---FRPLEQLLAYLKQQENQSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+A L G AAYHAG + R V D + ++VATVAFGMG+D
Sbjct: 234 YCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMGVD 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ ++R V HF +P+++EA+YQE+GRAGRD + ++++L + D RM+ L ++
Sbjct: 294 KPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEENPGRA 353
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ F M + E CRR +L FGE
Sbjct: 354 EVVWQR---------FLSMAAFAEAQTCRRLVLLNYFGE 383
>gi|410637731|ref|ZP_11348302.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
gi|410142699|dbj|GAC15507.1| ATP-dependent DNA helicase RecQ [Glaciecola lipolytica E3]
Length = 609
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 170/415 (40%), Positives = 245/415 (59%), Gaps = 23/415 (5%)
Query: 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69
S+ +K P+ ++L+ FG++ FRD Q I+ VLS RD LMPTGGGKS+C
Sbjct: 2 SSPTLEKPLPIENSTKPAEVLKEVFGYSHFRDGQQQVIEQVLSQRDALVLMPTGGGKSLC 61
Query: 70 YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
YQIPAL PGI +VVSPLI+LM++QV L G+A F++S+ + IY L GK
Sbjct: 62 YQIPALILPGITIVVSPLISLMKDQVDALTASGVAATFINSSIPREQLLNIYRQLQDGK- 120
Query: 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
+LLYV PE F+ +L ++ L+L+A+DEAHC+S WGHDFR YR L L+
Sbjct: 121 -FKLLYVAPERLMQLEFIDRLHTLN----LSLIAVDEAHCVSHWGHDFRQDYRLLGQLKT 175
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 247
+ P++P++ LTATA + D+ + L LQ P V +SSF+RPN+ Y + +YK A
Sbjct: 176 HFPNIPVMGLTATADIATRADITQQLNLQTPYVFRSSFDRPNIRYNLLSKYK-----AVD 230
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
L +K + IVYC R DELS L+ GI+ A YHAGL + R + D+I
Sbjct: 231 QLIHYVKGQ-EGSGIVYCNSRAKVDELSFKLAKQGINSAGYHAGLEPEIREKIQRDFIQD 289
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
V+VATVAFGMGI++ +VR V HF++P+S+E++YQE+GRAGRD +P+++LL Y D
Sbjct: 290 NVDVIVATVAFGMGINKSNVRYVVHFDLPRSIESYYQETGRAGRDGMPAEALLLYDEKDA 349
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R+ ++ ++ + F+ M + + CRR+ +L F E
Sbjct: 350 ARIRQWIAMGENTERHDV---------ELQKFAAMEAFADAQTCRRQVLLNYFSE 395
>gi|449454038|ref|XP_004144763.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Cucumis
sativus]
Length = 601
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/393 (44%), Positives = 243/393 (61%), Gaps = 13/393 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q +A +A S +DCF LMPTGGGKS+CYQ+PA +PG+ +V+SPL++L+++
Sbjct: 196 FGNKAFRPLQHEACKAAASKQDCFILMPTGGGKSLCYQLPATVQPGVTVVISPLLSLIQD 255
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
Q++ L K GI FL+S QT + ++L KPS +LLYVTPE AT F+ L+
Sbjct: 256 QIVTLNLKFGIPSTFLNSQQTSSQAAVVLQELRQDKPSCKLLYVTPERIATQSFLEILRF 315
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H + L +DEAHC+S WGHDFRP YR L L+ PDVP++ALTATA V++DV+
Sbjct: 316 MHMKKQLAGFVVDEAHCVSQWGHDFRPDYRNLGCLKQNFPDVPVMALTATATHSVREDVL 375
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTC 271
++L + + L+L+ SF+RPNL YEV K + L +K + C IVYCL ++ C
Sbjct: 376 KALRIPHALILERSFDRPNLKYEVVCK--TKEPLVQLGQFIKERFKNQCGIVYCLSKSEC 433
Query: 272 DELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
E+S L+ I A YHAGL + R V W Q+V AT+AFGMGID+ DVR V
Sbjct: 434 VEVSETLNKKFKIKAAYYHAGLAARQRVLVQKKWHVGDIQIVCATIAFGMGIDKPDVRFV 493
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H + KS+E++YQESGRAGRD P+ ++ Y D R+ +L Q S+SF
Sbjct: 494 IHNTMSKSIESYYQESGRAGRDGYPASCIVLYQKKDFSRVVCMLRNAQGFKSESF----- 548
Query: 391 SSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
K S+S +M +CE CRR+ +L+ FGE
Sbjct: 549 --KMSMSQGKKMQQFCELKDECRRQMLLQHFGE 579
>gi|343083870|ref|YP_004773165.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342352404|gb|AEL24934.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 709
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 247/399 (61%), Gaps = 20/399 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ +G+ FR +Q I+ V+ +DC LMPTG GKS+CYQ+PA+ PG+ LV+SP
Sbjct: 4 IDVLKKFYGYDSFRGQQESVIRQVIEKKDCIALMPTGAGKSVCYQVPAMVLPGLTLVISP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATP 144
LIALM++QV L E GI FL+ST M + + Y + K ++LLYV PE + T
Sbjct: 64 LIALMKDQVDALNEIGIPAAFLNST--MDISEQRYVSDQAMKGGIKLLYVAPERLFSGTH 121
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ LK+++ L+LVA+DEAHC+S WGHDFRP Y KL +LR PD P LALTATA
Sbjct: 122 PLVNALKEMN----LSLVAVDEAHCVSQWGHDFRPEYLKLGALRKAFPDTPFLALTATAD 177
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ +KD+ L L P SSF+RPN+ Y V L D + L L+ + IVY
Sbjct: 178 KQTRKDISARLHLNKPEWFISSFDRPNITYRV---TLRSDGFGKLVDFLQHRPNDAGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + + +A L+A G S YHAGL+ + R + +I +++VAT+AFGMGID+
Sbjct: 235 CLSRKSVENTAAKLNANGFSALPYHAGLSKENRQENQEKFIKDEVKIIVATIAFGMGIDK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H N+P+++E++YQE+GRAGRD LP ++LL+Y + D ++ ++ +S +++
Sbjct: 295 SNVRFVVHTNMPQNIESYYQETGRAGRDGLPGEALLFYSLGDSITLKRMI---ESADNEE 351
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ R +K MV +C+ CRRK +L FGE+
Sbjct: 352 Y-VRHMKAK-----MDTMVAFCQTKSCRRKYLLGYFGEK 384
>gi|328948910|ref|YP_004366247.1| RecQ familyATP-dependent DNA helicase [Treponema succinifaciens DSM
2489]
gi|328449234|gb|AEB14950.1| ATP-dependent DNA helicase, RecQ family [Treponema succinifaciens
DSM 2489]
Length = 520
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/394 (44%), Positives = 242/394 (61%), Gaps = 19/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q IQ VL GRD +MPTGGGKS+CY+IPAL PGI +VVSPLI
Sbjct: 13 ILKSVFGYESFRPMQRKIIQNVLDGRDTLAVMPTGGGKSLCYEIPALILPGITVVVSPLI 72
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L+ GI+ L+S+ K E + SGK ++LLYV+PE G M
Sbjct: 73 ALMQDQVAQLESYGISAVCLNSSLERNHYQKCCEKILSGK--IKLLYVSPE-GLNSGRMI 129
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + S+ ++ +AIDEAHCIS WGHDFRP Y +++ +RN P LALTATA +VQ
Sbjct: 130 RLLQ-ESKSSVDCIAIDEAHCISEWGHDFRPDYMEITHIRNQFPKSVFLALTATATKQVQ 188
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++++L ++NP + +SFNRPN+F +V KD + + ++ + + I+YC R
Sbjct: 189 ADIIKNLRMENPEIFMASFNRPNIFLQVIKKD---KPIEQVLNFIENHPNQSGIIYCFSR 245
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D ++ L I +YHAGLND R+ D+IS + ++VATVAFGMGI++ DVR
Sbjct: 246 KQVDLVAQELHINRIKALSYHAGLNDAQRTKNQQDFISDKADIMVATVAFGMGINKPDVR 305
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF++PKS+E +YQE GRAGRD L S++LL Y D ++ + N
Sbjct: 306 FVIHFDMPKSIEQYYQEIGRAGRDGLESEALLLYSAGDIHKIRYFFKDN----------- 354
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
S KS + M++YCE S CRRK +L FGE
Sbjct: 355 -FDSAKSENLLQGMINYCENSVCRRKSLLSYFGE 387
>gi|282896865|ref|ZP_06304871.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
gi|281198274|gb|EFA73164.1| ATP-dependent DNA helicase RecQ [Raphidiopsis brookii D9]
Length = 719
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 174/407 (42%), Positives = 253/407 (62%), Gaps = 18/407 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 6 LEKELKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 65
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ + SS T QV+++ E + +GK ++LLYV PE +
Sbjct: 66 PLIALMQDQVEALRNNNISATLINSSLTTYQVRSR-EEAIMNGK--VKLLYVAPERLVSE 122
Query: 145 GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L + + GL N V IDEAHC+S WGHDFRP YR+L LR VP +ALTATA
Sbjct: 123 RFLPILDVVKEKFGLANFV-IDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D+++ L L+ P V +SFNR NL+YEVR K+ ++Y ++ ++K N + I+
Sbjct: 182 TDRVRADIIQQLGLKQPAVHIASFNRQNLYYEVRPKN--RNSYGEILEIIKKN-EGSGII 238
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L I+ YHAGL D+ R+ +I +++VAT+AFGMGI+
Sbjct: 239 YCLTRKNVDELTLKLQNSQIAALPYHAGLVDQERAKNQTRFIRDDVRIMVATIAFGMGIN 298
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++P+++E++YQESGRAGRD PS+ L++ D + +E+ + K Q
Sbjct: 299 KPDVRFVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFSDVKTIEWSIGKKTDPQEQ 358
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ ++ Q++DY EG+ CRR L FGE+ G A+
Sbjct: 359 LIAKQQ---------LRQVIDYAEGTDCRRTIQLGYFGERFPGGCAN 396
>gi|330752412|emb|CBL87363.1| ATP-dependent DNA helicase RecQ [uncultured Flavobacteriia
bacterium]
Length = 739
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 178/398 (44%), Positives = 242/398 (60%), Gaps = 24/398 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG +FR Q ++++L+ ++ F +MPTGGGKS+CYQ+PAL GI +VVSPLIA
Sbjct: 21 LKKFFGFQKFRGLQKQIVKSILNNKNTFVIMPTGGGKSLCYQLPALISDGIAVVVSPLIA 80
Query: 90 LMENQVIGL----KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV L K+ GIA F SS Q+ + +D+ SG +LLYV PE
Sbjct: 81 LMKNQVDALRGICKDDGIAHVFNSSLTKNQINN-VKKDVTSGLT--KLLYVAPESLVKEE 137
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ LK ++ AIDEAHCIS WGHDFRP YR L + + D + I+ALTATA
Sbjct: 138 NITFLKNTK----VSFFAIDEAHCISEWGHDFRPEYRNLRQVVKKIGDNISIIALTATAT 193
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ D++++L + NP + K+SFNRPNLFYEVR K D+ S +K+N I+Y
Sbjct: 194 PKVQDDILKNLKMVNPEIFKASFNRPNLFYEVRQK--TSKVEYDIVSFIKSNETKSGIIY 251
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +ELS +L I YHAGL+ K R D +++ +V+VAT+AFGMGID+
Sbjct: 252 CLSRKKVEELSQFLQVNEIRALPYHAGLDSKQRVKNQDSFLNEDCEVIVATIAFGMGIDK 311
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y DD ++E +S +
Sbjct: 312 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYDDIEKLEKFIS------GKP 365
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
S +E S ++++ Y E SG RRK IL FGE
Sbjct: 366 LSEKEVGQ----SLINEIIAYAETSGSRRKFILHYFGE 399
>gi|298675436|ref|YP_003727186.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
gi|298288424|gb|ADI74390.1| ATP-dependent DNA helicase RecQ [Methanohalobium evestigatum
Z-7303]
Length = 596
Score = 329 bits (843), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/397 (41%), Positives = 243/397 (61%), Gaps = 18/397 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ K+L +FG+ +FR Q D I +L +D F +MPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 1 MYKILHKYFGYEEFRSHQKDIITDILDKKDTFVVMPTGGGKSLCYQLPALLMEGVTIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV L+ GI+ L+ST Q +I DL + + +LY+TPE
Sbjct: 61 PLISLMKDQVDELRSNGISAACLNSTLGYQESNQICNDLLYNR--IDVLYITPERLTMSK 118
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+ ++ +NL AIDEAHCIS WG DFRP Y +L+ L+ PD+P++ALTATA P
Sbjct: 119 TLDFLESVN----INLFAIDEAHCISEWGQDFRPEYLRLNMLKKKFPDIPLIALTATATP 174
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ DV+ L L++ SSFNR NL+YEVR+K DAY + LK + I+YC
Sbjct: 175 RVQNDVISLLELEDCRRYISSFNRDNLYYEVRHKK---DAYKQMVRYLKTHRKYNGIIYC 231
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++L L G YHAGL K R + +I Q++VAT+AFGMGI++
Sbjct: 232 QSRRAVEDLYNKLKKEGFRVLPYHAGLPAKIREENQESFIRDDVQIIVATIAFGMGINKP 291
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+++PK++E +YQ++GR GRD L +L++ DR ++E+ +++ K+ +
Sbjct: 292 NVRFVIHYDLPKNLENYYQQTGRGGRDGLDCDCILFFSYGDRYKIEYFINQKSRKSERDI 351
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++S + M+DYCE + CRRK +L FGE
Sbjct: 352 ---------ALSKLNMMIDYCESNVCRRKLLLNYFGE 379
>gi|449329518|gb|AGE95789.1| ATP-dependent DNA helicase [Encephalitozoon cuniculi]
Length = 766
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 173/397 (43%), Positives = 243/397 (61%), Gaps = 14/397 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F +FR Q + IQA LSG+D F LMPTGGGKS+CYQ+PAL GI +VVSPL++
Sbjct: 229 LREVFKMKEFRTNQREVIQACLSGKDVFVLMPTGGGKSICYQLPALVYDGITIVVSPLLS 288
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMS 148
L+++Q+ L +KGI ++S + + +++ L + ++ YVTPEL A G F
Sbjct: 289 LVQDQIRNLLQKGILALPINSNLSRAERDLVFQVLGGDELICKIFYVTPELIAKSGHFHD 348
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + RG L IDEAHC+S WGHDFRP Y++L S+R P VPI+ALTATA KV+
Sbjct: 349 VLSGLVCRGRLKRFVIDEAHCVSQWGHDFRPDYKELGSMRARYPSVPIIALTATATQKVE 408
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
D++E+L ++ K SFNR NL YEVR K D+ S ++ + D C I+YC
Sbjct: 409 MDILENLGIRGCETFKMSFNRSNLRYEVRAK--TSTVELDIASFVQTHFPDCCGIIYCTS 466
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ C+ +S L + A YHAGL+ R+SV + W +V+VAT+AFGMGID+KDV
Sbjct: 467 KKECEMISEKLRKY-MGTAFYHAGLSKNERNSVQEKWNRGEFKVIVATIAFGMGIDKKDV 525
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+ IPKS+E +YQE+GRAGRD L S +L+Y D++++ F++ K Q
Sbjct: 526 RFVIHYCIPKSLEGYYQETGRAGRDGLESVCVLFYTYGDKKKISFMIEKGDGGYEQKQRQ 585
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
RE D ++ +CE + CRR ++L FGE+
Sbjct: 586 RE--------DLEAVIQFCENKTDCRRMQVLAHFGER 614
>gi|427712781|ref|YP_007061405.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
gi|427376910|gb|AFY60862.1| ATP-dependent DNA helicase RecQ [Synechococcus sp. PCC 6312]
Length = 732
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 163/402 (40%), Positives = 250/402 (62%), Gaps = 9/402 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++ L+ +FG+ FR Q + I A L+ +D ++PTGGGKS+C+Q+PAL KPG+ LVVSP
Sbjct: 4 LEALKHYFGYEAFRPGQAEIINASLNQQDVLAILPTGGGKSICFQLPALLKPGVTLVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LIALM +QV+ L++ GI FL+ST + + +I+ L+ ++LLYV PE +
Sbjct: 64 LIALMLDQVLALQKNGIPATFLNSTLAAAEARARIHSILNG---EVKLLYVAPERLVSDS 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F + L IH + +DEAHC+S WGHDFRP YR+LS LR P +P++ALTATA
Sbjct: 121 FTALLANIHQTVGIASFVVDEAHCVSEWGHDFRPDYRQLSRLRELFPSIPMMALTATATH 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
V+ D+ E L L+ P + +SFNRPNL+YEV K + ++L +K + I+YC
Sbjct: 181 CVRADITEQLSLKQPFIHVASFNRPNLYYEVIEKSRGKVSLSELTRYIKKT-EGSGIIYC 239
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ R ++L++ L+ GIS YHAGLN+ R+ +I Q++VATVAFGMGI++
Sbjct: 240 MSRKNVEKLASELNENGISALPYHAGLNNDTRTDHQTRFIRDDVQIMVATVAFGMGINKP 299
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQS 384
DVR V H+++P+++E +YQESGR GRD P++ L++ D ++ + FI +K + ++
Sbjct: 300 DVRFVIHYDLPQTIEGYYQESGRGGRDGEPARCTLFFSPGDIKQADWFIQNKVHPETNEP 359
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+R +++ + Q+ Y + + CRR +L FGE G
Sbjct: 360 LEDEQRIARQQL---RQIAAYADSTLCRRTTLLGYFGEAFPG 398
>gi|403418217|emb|CCM04917.1| predicted protein [Fibroporia radiculosa]
Length = 842
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 173/419 (41%), Positives = 249/419 (59%), Gaps = 18/419 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVL 82
+A K+L FGH +++ KQ + ++A + G D F L PTG GKS+C+Q+PALA + G+ +
Sbjct: 39 KACWKILTTTFGHTEYKGKQKEVVEAAVQGLDVFVLAPTGMGKSLCFQVPALAARHGVTV 98
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPL+ALM+NQV L+ ++ ++S + + + I EDL+SG P +RLLYV+PE
Sbjct: 99 VVSPLLALMKNQVAKLRSVYVSVAAITSETSHEDRIYILEDLNSGHPEIRLLYVSPEKFC 158
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F L ++ R LN + +DEAHCIS WGHDFR YR+L S R+ P +PI+ALTAT
Sbjct: 159 TPEFNKLLGRLDERAQLNRLVVDEAHCISEWGHDFREEYRRLGSFRDRFPYIPIMALTAT 218
Query: 203 AAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYA-----DLCSVL-- 253
A P VQ+D++ SL + + K FNR NLFYEVRY D A D S L
Sbjct: 219 ATPVVQEDIVRSLHMPRERLFKVVHPFNRANLFYEVRYLSSADPAAHMVDIFDYISNLHH 278
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK---- 309
+ + I+YC R TCD L+ YL G++ YH G+ L +W
Sbjct: 279 RRGRPSSGIIYCRTRATCDNLAHYLRGKGLNARPYHRGIGSIVLDRTLAEWERGGSGQGG 338
Query: 310 -QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
VV AT+AFGMGID+ DVR + H+++PKS E +YQE+GR GRD LPSK +L+Y +D
Sbjct: 339 IDVVCATIAFGMGIDKADVRYILHYDLPKSFEGYYQETGRGGRDGLPSKCILFYSREDVI 398
Query: 369 RMEFILSKNQSKNSQSFSTRE--RSSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQV 424
R+ +S + +K + + E S++++ + ++++ EG CR I FGE +
Sbjct: 399 RVRNWVSGSHAKRLERAESLEGPMPSQRAVDSLTALINFAEGVNVCRHITICRYFGEHI 457
>gi|300777720|ref|ZP_07087578.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
gi|300503230|gb|EFK34370.1| ATP-dependent helicase RecQ [Chryseobacterium gleum ATCC 35910]
Length = 734
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 172/397 (43%), Positives = 241/397 (60%), Gaps = 24/397 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ +Q I +L G+D F LMPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFSTFKGQQEQIIDNLLGGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV + + G+A SS Q K ++++D+ SGK +LLYV PE
Sbjct: 72 LMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTK-QVFDDIKSGKT--KLLYVAPESLIKDD 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ LK++ ++ AIDEAHCIS WGHDFRP YR L + + + +VP++ALTATA P
Sbjct: 129 YLDFLKEVK----ISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIANVPVIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N LV K SFNRPNL+YEVR K +D ++ + + IVYC
Sbjct: 185 KVQDDIQKTLGMTNALVFKESFNRPNLYYEVRPKVNVD---KEIVKFINQHKGKSGIVYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++ +
Sbjct: 302 DVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ------KPV 355
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
S RE + +++V Y E S RR+ IL FGE
Sbjct: 356 SEREI----GLQLLNEVVGYAETSMSRRQYILYYFGE 388
>gi|167761544|ref|ZP_02433671.1| hypothetical protein CLOSCI_03955 [Clostridium scindens ATCC 35704]
gi|336422640|ref|ZP_08602783.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium
5_1_57FAA]
gi|167661210|gb|EDS05340.1| ATP-dependent DNA helicase RecQ [Clostridium scindens ATCC 35704]
gi|336007813|gb|EGN37834.1| ATP-dependent DNA helicase RecQ [Lachnospiraceae bacterium
5_1_57FAA]
Length = 622
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 180/422 (42%), Positives = 250/422 (59%), Gaps = 14/422 (3%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ KLL+ +FG+ FR+ Q I+AVLSGRD +MPTG GKSMC+QIPAL GI L
Sbjct: 3 KKTAEKLLKQYFGYDGFREGQEQLIEAVLSGRDVLGIMPTGAGKSMCFQIPALMMEGITL 62
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L + GI FL+S+ ++ K G+ +++YV PE
Sbjct: 63 VISPLISLMKDQVGALNQAGIHAAFLNSSLSVGQYAKALAYAREGR--YKIIYVAPERLE 120
Query: 143 TPGFMSKLKKIHSRGL-LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALT 200
T GF L + S G+ ++ +A+DEAHC+S WG DFRPSY K+ LP P++ A T
Sbjct: 121 TQGF---LDFVMSEGIKISFLAVDEAHCVSQWGQDFRPSYLKILDFLKKLPYRPVIGAYT 177
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL----KAN 256
ATA V+ D+M+ L LQ+P V+ + F+R NL++ VR K + D Y +L S + K
Sbjct: 178 ATATTGVRDDIMDILQLQDPSVITTGFDRENLYFAVR-KPV--DKYKELVSYIRRKEKEM 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ IVYCL R +++ L G S YHAGL+D R DD+I R+Q++VAT
Sbjct: 235 PGSSGIVYCLTRKNVEDVCYNLRKEGFSVTRYHAGLSDMERKENQDDFIYDRRQIMVATN 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H+N+PK+ME++YQE+GRAGRD PS +LYY D R F +
Sbjct: 295 AFGMGIDKSDVRFVIHYNMPKNMESYYQEAGRAGRDGEPSDCILYYEPMDVRTNRFFIEN 354
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTHRVV 436
N+ + TR ++ QM YC +GC R IL+ FGE G + + +
Sbjct: 355 NEDNEALDEITRRLVKERDEERLRQMTFYCFTTGCLRNYILDYFGEASPGYCGNCLNCIT 414
Query: 437 SF 438
F
Sbjct: 415 QF 416
>gi|381188984|ref|ZP_09896542.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379649120|gb|EIA07697.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 704
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 246/401 (61%), Gaps = 23/401 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L + L+ +FG +FR Q I A+LSG+D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 5 QKLHETLKENFGFEKFRINQEQVINAILSGQDTLAIMPTGGGKSICFQLPALLFPGITIV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI +++S+QT + ++L + K ++L+YV PE
Sbjct: 65 ISPLIALMKDQVDSLKANGIQACYINSSQTDAEQQSHIQNLINNK--VKLVYVAPE---- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L+ + S+ L+L+AIDEAHCISSWGHDFRP+Y L L+ P PILALTATA
Sbjct: 119 --SLSYLENVFSQITLSLIAIDEAHCISSWGHDFRPAYTNLGYLKKRFPSTPILALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+KD+ + L L+ P SSF+R NL EVR D + + A IV
Sbjct: 177 DKATRKDISKQLNLKEPKSFISSFDRKNLSLEVRPAL---DRVKQIVDFISAKPRESGIV 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T +EL+ L GI+ AYHAGL+ RS DD+I+ QVV AT+AFGMGID
Sbjct: 234 YCLSRKTTEELAEKLQKAGINAKAYHAGLDSTVRSKTQDDFINDDCQVVCATIAFGMGID 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GRAGRD LPS+++L+ D ++ Q
Sbjct: 294 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSETILFESYGDVIQL------------Q 341
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F+++ +++ ++ +M Y + CRRK +L FGE V
Sbjct: 342 KFASQGLNAEVQLAKLERMKQYADALSCRRKILLSYFGELV 382
>gi|334366676|ref|ZP_08515601.1| ATP-dependent DNA helicase RecQ family protein [Alistipes sp. HGB5]
gi|313157180|gb|EFR56610.1| ATP-dependent DNA helicase RecQ family protein [Alistipes sp. HGB5]
Length = 730
Score = 328 bits (841), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/408 (43%), Positives = 245/408 (60%), Gaps = 30/408 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALIMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ + GIA FL+S+ ++ D+ SGK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSADSGIA-HFLNSSLNKTAVAQVRADVLSGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLHKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVD---RDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ D ++ R V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIKALAYHAGMDAATRAANQDHFLMERADVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE---- 348
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + V Y E S CRRK +L FGE+
Sbjct: 349 ----KFMQGKPIAEQEIGKLL--LQETVSYAESSMCRRKTLLHYFGEE 390
>gi|332667951|ref|YP_004450739.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
gi|332336765|gb|AEE53866.1| ATP-dependent DNA helicase RecQ [Haliscomenobacter hydrossis DSM
1100]
Length = 713
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 244/397 (61%), Gaps = 22/397 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q + I+A+ +G+D LMPTGGGKS+C+QIPA+ PG +VVSPLI+
Sbjct: 10 LKRYFGYDQFRPLQAEIIRAIFAGKDALVLMPTGGGKSVCFQIPAVTMPGTCVVVSPLIS 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL+ GI FL+S + + K+ E +G +L LLYV+PE + F+S
Sbjct: 70 LMKDQVEGLRANGIQAAFLNSAIDSREQLKVEESFYAG--ALNLLYVSPEKLVSGNFVSI 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK RG +NL AIDEAHCIS+WGHDFRP Y ++ L+ + P VP++ALTATA +K
Sbjct: 128 LK----RGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFPQVPVIALTATADKLTRK 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L+ P + +SF+RPNL EVR + ++ + I+YCL R
Sbjct: 184 DIVDQLKLEEPGIFIASFDRPNLSLEVRPGQ---QRLGQIQEFVQKHPKQAGIIYCLSRK 240
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T ++++A L+ G+ AYHAGL+ RS + D++I+ ++ ATVAFGMGID+ +VR
Sbjct: 241 TAEDVAAKLAQQGLKAEAYHAGLSPDRRSKIQDNFINDNIHIICATVAFGMGIDKSNVRW 300
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL--SKNQSKNSQSFST 387
V H+N+PK++E +YQE GRAGRD + +LL+Y D + I+ +N ++N
Sbjct: 301 VIHYNLPKNLEGYYQEIGRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLVK 360
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER M Y E CRR+ +L F E +
Sbjct: 361 LER-----------MQQYAESLACRRRILLAYFSENL 386
>gi|397169212|ref|ZP_10492647.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
gi|396089292|gb|EJI86867.1| ATP-dependent DNA helicase [Alishewanella aestuarii B11]
Length = 605
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/399 (41%), Positives = 240/399 (60%), Gaps = 18/399 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L+ +L+ FG++ +R Q + I AVL GRDCF L+PTGGGKS+CYQ+PAL PG+ LV
Sbjct: 3 EQLLAVLKQSFGYSSWRSGQQEIISAVLQGRDCFVLLPTGGGKSLCYQLPALQLPGVTLV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA +++S+ + + + L G+ L+LLYV PE
Sbjct: 63 VSPLMSLMKDQVDSLRANGIAAAYVNSSLSREAVLDVLNQLRYGE--LKLLYVAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L+++ ++L AIDEAHCIS WGHDFRP Y LS L+ P VP +ALTATA
Sbjct: 121 PSFLERLQEVG----VSLFAIDEAHCISQWGHDFRPDYMALSQLKQRFPGVPFIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P Q+D+++ L L NP + + SF+RPN+ Y V+ K L + LK + I+
Sbjct: 177 DPATQQDILQQLGLSNPYIHRGSFDRPNIRYTVQEK---FRPLEQLLAYLKQQENQSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+A L G AAYHAG + R V D + ++VATVAFGMG+D
Sbjct: 234 YCSSRRKVDELTAQLQERGYKVAAYHAGHDSTERQRVQDAFKRDDINLIVATVAFGMGVD 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ ++R V HF +P+++EA+YQE+GRAGRD + ++++L + D RM+ L ++
Sbjct: 294 KPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEAVLLFDPADIGRMKRWLEAEENPGRA 353
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ F M + E CRR +L FGE
Sbjct: 354 EVVWQR---------FLSMAAFAEAQTCRRLVLLNYFGE 383
>gi|448111284|ref|XP_004201806.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
gi|359464795|emb|CCE88500.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
Length = 1430
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 171/445 (38%), Positives = 260/445 (58%), Gaps = 42/445 (9%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI + L+GRD F LMPTGGGKS+CYQ+PAL G +V+SPLI+LM++Q
Sbjct: 750 FRPNQLEAIVSTLNGRDVFVLMPTGGGKSLCYQLPALISSGKTRGTTIVISPLISLMQDQ 809
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKI 153
V L K I +SS + + E +G+ L+L+Y++PE+ T + ++ ++
Sbjct: 810 VQHLLHKNIRAGMISSKGSAAERKSTLEQFRNGE--LQLVYLSPEMVNTSQHIQRIIARL 867
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L V +DEAHC+SSWGHDFRP Y+ +S + P VP++ALTATA KV+ D++
Sbjct: 868 YESRQLARVVVDEAHCVSSWGHDFRPDYKGMSLFKQQFPQVPVMALTATANEKVRMDIVH 927
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLER 268
L + +P++LK SFNR NLFYE+++K D + D +L + I+YC +
Sbjct: 928 HLQMSDPVLLKQSFNRTNLFYEIKWKAANFLDWIRDY------ILTKQQNKTGIIYCHSK 981
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ S L+ G+ C+ YHAGL+ R + DW +R QV+ AT+AFGMGID+ DVR
Sbjct: 982 QSCEVTSDRLNQWGVRCSYYHAGLSPTERFQIQTDWQQNRIQVICATIAFGMGIDKPDVR 1041
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H IP+S+E +YQE+GRAGRD LPS+ +++Y D R ++ ++ ++ S
Sbjct: 1042 FVIHLFIPRSLEGYYQETGRAGRDGLPSECIMFYSYKDARSLQNMIQRD--------SEL 1093
Query: 389 ERSSKKS-ISDFSQMVDYCEG-SGCRRKKILESFGEQV--------------LGCVASVT 432
+R K+S ++ Q+V YCE S CRRK++L F E+ +V
Sbjct: 1094 DREGKESHLAKLRQVVQYCENTSDCRRKQVLHYFNERFDPAHCARKCDNCLNNNSANAVI 1153
Query: 433 HRVVSFISPFILLISSSKTDTCIIM 457
H V ++ + L+ S + D ++
Sbjct: 1154 HDVTAYAKDILSLVESLQGDKVTVL 1178
>gi|53133486|emb|CAG32072.1| hypothetical protein RCJMB04_17c23 [Gallus gallus]
Length = 1183
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 248/429 (57%), Gaps = 19/429 (4%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 397 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 456
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 457 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIASTYLTGDITDAD 516
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ +++R LL IDEAHC+S WGH
Sbjct: 517 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGH 576
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 577 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 636
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 637 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 696
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 697 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 756
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 413
S LL+Y D R+ ++ + NS + T ++ MV YCE CRR
Sbjct: 757 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVDCRR 809
Query: 414 KKILESFGE 422
++L FGE
Sbjct: 810 IQLLAYFGE 818
>gi|224074554|ref|XP_002304389.1| predicted protein [Populus trichocarpa]
gi|222841821|gb|EEE79368.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 328 bits (841), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 173/400 (43%), Positives = 245/400 (61%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +R Q + I A++SGRD +M GGGKS+CYQ+PA+ + G+ LV+SPL++L+++
Sbjct: 89 FGIPSYRQNQKEIINAIMSGRDVLVIMAAGGGKSLCYQLPAILRDGVALVISPLLSLIQD 148
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST + + + IY+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 149 QVMGLTALGIPAFMLTSTTSKENEKFIYKALEKGEGELKILYVTPEKISKSKRFMSKLEK 208
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ +VP++ALTATA KVQ DVM
Sbjct: 209 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFSNVPVVALTATATQKVQYDVM 268
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ +N ++ IVYC R
Sbjct: 269 EMLRIPKCVKFVSTVNRPNLFYTVRSKSSVGKVVVDEIAEFIQESYSNSES-GIVYCFSR 327
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++A L GI+ YHA ++ AR V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 328 KECEQVAAELRERGIAADYYHADMDVNAREKVHTWWSKNKLQVIVGTVAFGMGINKPDVR 387
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ +L+Y D R S
Sbjct: 388 FVIHHSLSKSMETYYQESGRAGRDGLPSECVLFYRPADVPR------------QSSMVFY 435
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E S +++ D +V YC+ CRR F E + C
Sbjct: 436 ENSGLQNLYD---IVRYCQSKRQCRRNAFFRHFAEPLQDC 472
>gi|374316651|ref|YP_005063079.1| ATP-dependent DNA helicase RecQ [Sphaerochaeta pleomorpha str.
Grapes]
gi|359352295|gb|AEV30069.1| ATP-dependent DNA helicase RecQ [Sphaerochaeta pleomorpha str.
Grapes]
Length = 619
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 164/395 (41%), Positives = 248/395 (62%), Gaps = 18/395 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG+ FRD Q + I A+LSGRD F MPTGGGKS+CYQIPA+ G+ +V+SPL
Sbjct: 25 KILKTVFGYDSFRDNQKEVISAILSGRDVFTSMPTGGGKSLCYQIPAVMFEGLTVVISPL 84
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV KGIA FL+S+ + T+IY L + ++LLY++PE A G++
Sbjct: 85 IALMKDQVDDAVSKGIAASFLNSSLESKEITEIYARLH--RNEIKLLYISPERLAIDGYL 142
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L+ ++ ++ AIDEAHC+S WGHDFRP Y L+ +R+ P VP+ TATA +V
Sbjct: 143 QWLQTLN----ISFFAIDEAHCLSEWGHDFRPDYLSLAQIRDAFPTVPLAGFTATATQQV 198
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
Q D++ L +++PL +++SFNR L+YEVR K + AD +K + + IVY +
Sbjct: 199 QDDIIRILKMRDPLTVRASFNRKELYYEVRQKTEILSQIADF---IKLHSEESGIVYRIS 255
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +AYL GI YHAGL+ + R+ D + + + V+VAT+AFGMGID+ ++
Sbjct: 256 RKDVEKTAAYLKTQGIKALYYHAGLSREERAKNQDLFNNDKADVIVATIAFGMGIDKSNI 315
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++ K+ME +YQE+GRAGRD L S ++++G D R ++ + + + Q
Sbjct: 316 RYVIHGDLSKNMEGYYQETGRAGRDGLASDCIMFFGAGDVARQQYFIEQIEDPAEQ---- 371
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+K+ + +++V + CRRK+ILE FGE
Sbjct: 372 -----EKAKASLNRIVRFATVQVCRRKQILEYFGE 401
>gi|399024201|ref|ZP_10726247.1| ATP-dependent DNA helicase RecQ [Chryseobacterium sp. CF314]
gi|398081075|gb|EJL71860.1| ATP-dependent DNA helicase RecQ [Chryseobacterium sp. CF314]
Length = 734
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 172/397 (43%), Positives = 242/397 (60%), Gaps = 24/397 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ +Q I+ +L G+D F LMPTGGGKS+CYQ+PAL G +VVSPLIA
Sbjct: 12 LKKYFGFSTFKGQQEQIIENLLDGKDIFVLMPTGGGKSLCYQLPALISEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV + + G+A SS Q K ++++D+ SGK +LLYV PE
Sbjct: 72 LMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTK-QVFDDIKSGKT--KLLYVAPESLIKED 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ LK++ ++ AIDEAHCIS WGHDFRP YR L + + + +VP++ALTATA P
Sbjct: 129 YLDFLKEV----TISFFAIDEAHCISEWGHDFRPEYRNLKLIIDKIANVPVIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + N LV K SFNRPNL+YEVR K +D ++ + + IVYC
Sbjct: 185 KVQDDIQKTLGMANALVFKESFNRPNLYYEVRPKVNVD---KEIVKFINQHKGKSGIVYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVANQDKFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++ +
Sbjct: 302 DVRFVIHYDFPKSLESYYQETGRAGRDGGEGYCLAFYDPKDIEKLEKFLAQ------KPV 355
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
S RE + +++V Y E S RR+ IL FGE
Sbjct: 356 SEREI----GLQLLNEVVGYAETSMSRRQYILYYFGE 388
>gi|325103763|ref|YP_004273417.1| ATP-dependent DNA helicase RecQ [Pedobacter saltans DSM 12145]
gi|324972611|gb|ADY51595.1| ATP-dependent DNA helicase RecQ [Pedobacter saltans DSM 12145]
Length = 728
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 179/411 (43%), Positives = 243/411 (59%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L+ L+ FG F+ Q I ++L+ D F +MPTGGGKS+CYQ+PAL G L
Sbjct: 4 KKSLIDNLQTFFGFDNFKGDQEAIITSILNKEDTFVIMPTGGGKSICYQLPALMSEGTAL 63
Query: 83 VVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ T ++ ED+ SGK +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGYDSIAHFLNSSLTKTETNRVKEDVISGKT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
+ LK + ++ VA+DEAHCIS WGHDFRP YRK+ + N + D+PI+A
Sbjct: 122 SLIKQENIDFLKSV----TVSFVAVDEAHCISEWGHDFRPEYRKIRQVVNNIREDIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + N V KSSFNR NLFYEVR K + + D+ +K N
Sbjct: 178 LTATATPKVQTDIQKNLGMMNANVFKSSFNRGNLFYEVRPKG---NVFKDIIKYIKNNPG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E++ L GI YHAGL+ K R+ D ++ V+VAT+AF
Sbjct: 235 KSGIVYCLSRKKVEEVANALEINGIRSLPYHAGLDAKVRADTQDKFLMEEVDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGYCIAFYSEKDVDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E + CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYSESAVCRRKQILHYFGENFNEAGC 395
>gi|449453437|ref|XP_004144464.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 738
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 171/400 (42%), Positives = 242/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + + AV+SGRD +M GGGKS+CYQ+PAL GI LVVSPL++L+++
Sbjct: 86 FGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIALVVSPLLSLIQD 145
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+S + + + IY++L+ G+ S+++LYVTPE ++ + FMSKL+K
Sbjct: 146 QVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKVSKSKRFMSKLEK 205
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+L+AIDEAHC S WGHDFRP Y+ L L+ P+ P++ALTATA +VQ D++
Sbjct: 206 CYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNAPVIALTATATQRVQNDLV 265
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ I+YC R
Sbjct: 266 EMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFIQESYPNNES-GIIYCFSR 324
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +SR QV+V TVAFGMGI++ DVR
Sbjct: 325 KECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMGINKPDVR 384
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ LLYY D R ++ S
Sbjct: 385 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPRQSSMVFYENS--------- 435
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLGC 427
+ + +V YC+ CRR F E + C
Sbjct: 436 ------GLENLYGIVQYCQSRRQCRRSVFFRHFAEPLKDC 469
>gi|255557667|ref|XP_002519863.1| DNA helicase recq1, putative [Ricinus communis]
gi|223540909|gb|EEF42467.1| DNA helicase recq1, putative [Ricinus communis]
Length = 714
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 247/404 (61%), Gaps = 23/404 (5%)
Query: 31 RWH-FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
++H FG +R Q + + AV+SGRD +M GGGKS+CYQ+PA+ + G+ LV+SPLI+
Sbjct: 88 KFHVFGITSYRPNQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPAILRDGVSLVISPLIS 147
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMS 148
L+++QV+GLK GI L+ST + + + IY+ L+ G+ L++LYVTPE ++ + FMS
Sbjct: 148 LIQDQVMGLKALGIPAYKLTSTTSKEDEKFIYKALEKGEEMLKILYVTPEKVSKSKRFMS 207
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
KL+K H RG L+++AIDEAHC S WGHDFRP Y+ L L+ P+VP+LALTATA KVQ
Sbjct: 208 KLEKCHHRGHLSIIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPNVPVLALTATATQKVQ 267
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVY 264
D+ME L + + S+ NRPNLFY VR K ++ D A+ N ++ IVY
Sbjct: 268 YDLMEMLHIPKCVRFVSTVNRPNLFYMVREKSSVGKVVIDEIAEFIRESYPNNES-GIVY 326
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R C++++A L GIS YHA ++ AR V W ++ QV+V TVAFGMGI++
Sbjct: 327 CFSRKECEQVAADLRERGISADYYHADMDVNAREKVHMRWSQNKLQVIVGTVAFGMGINK 386
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H ++ KSME +YQESGRAGRD PS+ +L++ D R S
Sbjct: 387 PDVRFVIHHSLSKSMETYYQESGRAGRDGAPSECVLFFRPGDVPR------------QSS 434
Query: 385 FSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E S +++ D +V YC+ CRR F E + C
Sbjct: 435 MVFYENSGLQNLYD---IVRYCQSKRTCRRSAFFRHFSEPLQDC 475
>gi|51242943|ref|NP_001003716.1| ATP-dependent DNA helicase Q5 isoform 3 [Homo sapiens]
gi|5410449|gb|AAD43062.1|AF135183_2 Recq helicase 5 [Homo sapiens]
gi|4191812|dbj|BAA74454.1| DNA helicase [Homo sapiens]
gi|7959111|dbj|BAA95952.1| DNA helicase recQ5 alpha [Homo sapiens]
gi|119609700|gb|EAW89294.1| RecQ protein-like 5, isoform CRA_e [Homo sapiens]
gi|119609701|gb|EAW89295.1| RecQ protein-like 5, isoform CRA_e [Homo sapiens]
Length = 410
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 173/403 (42%), Positives = 247/403 (61%), Gaps = 12/403 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 249 ALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG 410
++ F++ K +K + + S K +I F +V +CE G
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELG 410
>gi|363580854|ref|ZP_09313664.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium HQM9]
Length = 702
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 248/397 (62%), Gaps = 23/397 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG+++FR +Q + I A+ G D +MPTGGGKS+CYQ+PA G+ LV+S
Sbjct: 9 LYKNLKEYFGYSEFRQQQKEIITAIFKGNDNLVIMPTGGGKSICYQLPATLLNGLTLVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV GL+ GI F++S+Q + + I+ + + + ++LLYV PE
Sbjct: 69 PLIALMKDQVDGLRANGIGAAFINSSQAAEDQHAIFNAILTNE--IKLLYVAPE------ 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S+L+ I ++ L+L+AIDEAHCIS+WGHDFRP+Y +L L+N P PI+ALTATA
Sbjct: 121 SLSQLEGILNQTTLSLIAIDEAHCISAWGHDFRPAYTQLGFLKNRFPHTPIIALTATADK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ + L L +P + SSF+RPNL VR D + + + + I+YC
Sbjct: 181 ATREDISKQLNLNHPTLHLSSFDRPNLSLSVRPGI---DRVKKILEFVDDHPNDSGIIYC 237
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T + L+ L + G AYHAGL R V +++I+ + Q+V ATVAFGMGID+
Sbjct: 238 LSRKTTENLAEKLDSAGFKAKAYHAGLGHHVREQVQNEFINDQLQIVCATVAFGMGIDKS 297
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK++E +YQE GRAGRD +PS+++L++ D ++ Q F
Sbjct: 298 NVRWVIHYNLPKNIEGYYQEIGRAGRDGVPSETILFHSYADVVQL------------QQF 345
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+T+ +++ ++ +M Y + CRRK +L FGE
Sbjct: 346 ATKSGNTEVQLAKLDRMQQYADALSCRRKVLLSYFGE 382
>gi|224123710|ref|XP_002330189.1| predicted protein [Populus trichocarpa]
gi|222871645|gb|EEF08776.1| predicted protein [Populus trichocarpa]
Length = 588
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 242/402 (60%), Gaps = 30/402 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ +DCF LMPTGGGKS+CYQ+PA KPG+ +V+SPL++L+++
Sbjct: 182 FGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQD 241
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT I ++L KPS +LLYVTPE + P F+ LK
Sbjct: 242 QIITLNLKFGIPATFLNSQQTSAQAAAILQELRHDKPSCKLLYVTPERIAGNPAFLEILK 301
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP Y++L L+ P VP++ALTATA V++D+
Sbjct: 302 CLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSVREDI 361
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+++L + LVL++SF+RPNL YEV K DLL D + + C I
Sbjct: 362 LKTLRIPGALVLETSFDRPNLKYEVIGKTKESLKQLGDLLRDRFK----------NQCGI 411
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL + C E+S +L+ I YHAGL + R V W + +V AT+AFGMG
Sbjct: 412 VYCLSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMG 471
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + KS+E++YQESGRAGRD P+ + Y D R+ +L Q
Sbjct: 472 IDKPDVRFVIHNTLSKSIESYYQESGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYK 531
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
+SF K +++ +M YCE CRR+ +LE FGE
Sbjct: 532 RESF-------KPAMAQAQKMKSYCELKVECRRQVLLEHFGE 566
>gi|426346802|ref|XP_004041060.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 3 [Gorilla gorilla
gorilla]
gi|426346804|ref|XP_004041061.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 4 [Gorilla gorilla
gorilla]
Length = 435
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 171/388 (44%), Positives = 242/388 (62%), Gaps = 12/388 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 24 FGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q + ++ DL+ KP ++LY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLN 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++FGMG+
Sbjct: 264 VYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ 383
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSG 410
+ + S K +I F +V +CE G
Sbjct: 384 EKRGNKA-SDKATIMAFDALVTFCEELG 410
>gi|332260119|ref|XP_003279133.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 1 [Nomascus
leucogenys]
gi|332260121|ref|XP_003279134.1| PREDICTED: ATP-dependent DNA helicase Q5 isoform 2 [Nomascus
leucogenys]
Length = 435
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 171/388 (44%), Positives = 241/388 (62%), Gaps = 12/388 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 24 FGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLARGITIVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q + ++ DL+ KP ++LY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLN 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR L P +ALTATA P+VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRTRLGHAPCVALTATATPQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++FGMG+
Sbjct: 264 VYCRTREACEQLAIELSCRGVNAKAYHAGLKSSERTLVQNDWMEEKVPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ 383
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSG 410
+ + S K +I F +V +CE G
Sbjct: 384 EKRGNKA-SDKATIMAFDALVTFCEELG 410
>gi|51242947|ref|NP_001003715.1| ATP-dependent DNA helicase Q5 isoform 2 [Homo sapiens]
gi|5410448|gb|AAD43061.1|AF135183_1 Recq helicase 5 [Homo sapiens]
gi|7959115|dbj|BAA95954.1| DNA helicase recQ5 gamma [Homo sapiens]
gi|16877308|gb|AAH16911.1| RECQL5 protein [Homo sapiens]
gi|119609699|gb|EAW89293.1| RecQ protein-like 5, isoform CRA_d [Homo sapiens]
Length = 435
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 171/388 (44%), Positives = 242/388 (62%), Gaps = 12/388 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 24 FGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q + ++ DL+ KP ++LY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLN 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++FGMG+
Sbjct: 264 VYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ 383
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSG 410
+ + S K +I F +V +CE G
Sbjct: 384 EKRGNKA-SDKATIMAFDALVTFCEELG 410
>gi|150004558|ref|YP_001299302.1| ATP-dependent DNA helicase [Bacteroides vulgatus ATCC 8482]
gi|294776076|ref|ZP_06741571.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|423312434|ref|ZP_17290371.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
gi|149932982|gb|ABR39680.1| putative ATP-dependent DNA helicase [Bacteroides vulgatus ATCC
8482]
gi|294450068|gb|EFG18573.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|392688918|gb|EIY82202.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
Length = 605
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 242/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+++ L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIVQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKMRTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T + ++ +M Y E CRR+ +L FGE
Sbjct: 341 FATESSQQEINLEKLHRMQQYAESDICRRRILLNYFGE 378
>gi|307942792|ref|ZP_07658137.1| ATP-dependent DNA helicase RecQ [Roseibium sp. TrichSKD4]
gi|307773588|gb|EFO32804.1| ATP-dependent DNA helicase RecQ [Roseibium sp. TrichSKD4]
Length = 627
Score = 327 bits (839), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 247/405 (60%), Gaps = 23/405 (5%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H A ++LR FG+A+FR KQ D I A++SGRD L PTG GKS+CYQIPAL + G+
Sbjct: 22 HSVRAPEEILRTVFGYAEFRGKQKDVINALVSGRDAVVLFPTGAGKSLCYQIPALCRSGL 81
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM++QV L+ G+ L+S+ + + + +IY D+ + +L LLYVTPE
Sbjct: 82 GIVVSPLIALMKDQVGALQAAGVNAAALNSSLSPEERDEIYRDIR--EETLDLLYVTPER 139
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT GF L + L+L AIDEAHC+S WGHDFRP Y LS L + P VP +ALT
Sbjct: 140 LATEGFRRVLDTVR----LSLFAIDEAHCVSQWGHDFRPEYLSLSLLTDRYPGVPRVALT 195
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA P Q+D+ E L L+ V +SF+RPN+ YE+ + + L L +
Sbjct: 196 ATADPHTQRDLQERLRLEQADVFITSFDRPNIRYEIVERT---NQRQQLLDFLNRHKGES 252
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R ++++ +L A GI YHAGL + R++ D ++ +VATVAFGM
Sbjct: 253 GIVYCLSRAKVEDIAEWLCAKGIKALPYHAGLPAEMRAANQDAFLLEEGLCLVATVAFGM 312
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKN 377
GID+ DVR V H ++P S+EA+YQE+GRAGRD PS++ + YGM D RRRM +++
Sbjct: 313 GIDKPDVRFVAHLDLPSSVEAYYQETGRAGRDGEPSEAFMAYGMADVVQRRRM---IAEG 369
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + + + + ++ CE +GCRR+ +L FGE
Sbjct: 370 DAPDE--------IKRAEQAKLNALLGICETAGCRRQALLAHFGE 406
>gi|393763185|ref|ZP_10351808.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
gi|392606102|gb|EIW88990.1| ATP-dependent DNA helicase RecQ [Alishewanella agri BL06]
Length = 606
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 167/399 (41%), Positives = 246/399 (61%), Gaps = 18/399 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L+ L+ FG++ +RD Q + I A L+GRDCF L+PTGGGKS+CYQ+PAL P + +V
Sbjct: 3 EQLLTALKQIFGYSSWRDGQAEIIAAALAGRDCFVLLPTGGGKSLCYQLPALQLPKVTVV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM++QV L+ GIA +++S+ + + ++ L + L+LLYV PE
Sbjct: 63 VSPLMSLMKDQVDTLQANGIAAAYVNSSLSREAVLEVLNQLRYDE--LKLLYVAPERLLQ 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F+ +L+++ ++L AIDEAHC+S WGHDFRP Y L+ LR + P VP++ALTATA
Sbjct: 121 PQFIERLQEVG----VSLFAIDEAHCVSQWGHDFRPDYMALAQLRQHFPGVPVMALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
P Q+D+++ L LQ P + + SF+RPN+ Y V+ K L + LK + I+
Sbjct: 177 DPATQQDIVQQLALQQPFIHRGSFDRPNIRYTVQEKF---RPLEQLLAYLKQQENHSGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+A L G AAYHAG + R V D + ++VATVAFGMG+D
Sbjct: 234 YCSSRRKVDELTAQLQEKGFKAAAYHAGHDATHRQQVQDAFKRDDLALIVATVAFGMGVD 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ ++R V HF +P+++EA+YQE+GRAGRD + +++LL + D RM+ L + + N +
Sbjct: 294 KPNIRFVVHFELPRTIEAYYQETGRAGRDGVAAEALLLFDPADIGRMKRWL-QTEENNLR 352
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ T +R F M + E CRR +L FGE
Sbjct: 353 AEVTWQR--------FLSMAAFAEAQTCRRLVLLNYFGE 383
>gi|157786722|ref|NP_001099323.1| ATP-dependent DNA helicase Q5 [Rattus norvegicus]
gi|149054808|gb|EDM06625.1| RecQ protein-like 5 (predicted) [Rattus norvegicus]
Length = 973
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 179/422 (42%), Positives = 259/422 (61%), Gaps = 13/422 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PA+
Sbjct: 9 PFDRERRVRSTLKKVFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPAVL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKELLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLLSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV +L L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFAALHLKQPVASFKTPCFRANLFYDVQFKELIPDVYGNLRDFCLK 248
Query: 255 A------NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A NG + C IVYC R C++L+ LS+ G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKADNGSSSGCGIVYCRTREACEQLAIELSSRGVNAKAYHAGLKASERTQVQNEWME 308
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +D
Sbjct: 309 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRND 368
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
R ++ F++ K +K + + S K ++ F +V +CE GCR I + FG+
Sbjct: 369 RDQVSFLIRKELAKLQEKRGNKP-SDKATLLAFDALVTFCEEVGCRHAAIAKYFGDAPPA 427
Query: 427 CV 428
C
Sbjct: 428 CA 429
>gi|302337379|ref|YP_003802585.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
gi|301634564|gb|ADK79991.1| ATP-dependent DNA helicase RecQ [Spirochaeta smaragdinae DSM 11293]
Length = 601
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 245/403 (60%), Gaps = 18/403 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG++ F+ Q + I A+L+GRD F MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 6 RILKSVFGYSSFKANQKEVINAILAGRDLFAAMPTGGGKSLCYQIPALLFDGLTVVVSPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GI FL+S+Q+ + T+ Y L G+ ++LLY++PE A GF
Sbjct: 66 IALMKDQVDAALSLGIPAAFLNSSQSQEDATETYRRLYRGE--IKLLYLSPERLAVDGFT 123
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++L A+DEAHC+S WGHDFRP Y L+ LR P VPI A TATA +V
Sbjct: 124 ERLAAFN----VSLFAVDEAHCLSEWGHDFRPDYLALAQLRTAFPTVPIAAFTATATVRV 179
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
Q+D++ L L++P +L++SFNR LFY+V K + + + + A+ D IVY L
Sbjct: 180 QEDIIRLLRLEDPFILRASFNRKELFYQVLPKT---EVLSQIAQYIGAHPDQSGIVYRLS 236
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R D+ YL GI YHAG++ R+ + + + QV+VAT AFGMGID+ ++
Sbjct: 237 RKDTDKTVDYLGKLGIRALPYHAGMDKDERARNQERFNNDDVQVIVATTAFGMGIDKNNI 296
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PKSME +YQE+GRAGRD L S+ +L++G D R+ + + + + Q
Sbjct: 297 RYVIHGDLPKSMEGYYQETGRAGRDGLESQCILFFGTADIARLNYFIRQIEDPAEQ---- 352
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
++S + +M + + CRRK+ILE F E G S
Sbjct: 353 -----RRSRENLDRMARFASVNVCRRKQILEYFNETFEGNCGS 390
>gi|168029873|ref|XP_001767449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681345|gb|EDQ67773.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 655
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 173/399 (43%), Positives = 242/399 (60%), Gaps = 20/399 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + G LV+SPL++L+++
Sbjct: 80 FGIKSYRQNQHEIINAVMSGRDVIVIMAAGGGKSLCYQLPAMLRTGTALVISPLLSLIQD 139
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
QV+GL GI+ L+ST T + IY+ L+ G+ L++LYVTPE A + F+SKL+K
Sbjct: 140 QVMGLTALGISASMLTSTTTKDEEKSIYKSLEKGEGDLKILYVTPEKVAKSKRFVSKLEK 199
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+L+AIDEAHC S WGHDFRP Y++L L+ P VP++ALTATA +VQ D+
Sbjct: 200 CNHGGRLSLIAIDEAHCCSQWGHDFRPDYKQLGILKKQFPRVPMIALTATATERVQTDLR 259
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYAD-LCSVL--KANGDTCAIVYCLERT 269
E L + S+ NRPNLFYEVR K A D + S + K + IVYC R
Sbjct: 260 EMLQITRCEKFVSTVNRPNLFYEVREKKANGSAAIDDIASFILDKYSKKESGIVYCFSRK 319
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++A L GIS A YHA + + RSSV W +++ QV+V TVAFGMGI++ DVR
Sbjct: 320 ECEQVAAELRKRGISAAHYHADMKPETRSSVHMRWSTNKLQVIVGTVAFGMGINKPDVRF 379
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++ KS+E +YQESGRAGRD LP+ LLY+ D R ++S F
Sbjct: 380 VIHHSLSKSLETYYQESGRAGRDGLPAHCLLYFRPADLPR----------QSSMVF---- 425
Query: 390 RSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLGC 427
+ + + + +C+ CRR FGE++ C
Sbjct: 426 -AEMAGLHNLYAICRFCQSKQACRRAAFFRHFGEKIQKC 463
>gi|389806094|ref|ZP_10203234.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
gi|388446093|gb|EIM02139.1| ATP-dependent DNA helicase RecQ [Rhodanobacter thiooxydans LCS2]
Length = 611
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 244/396 (61%), Gaps = 17/396 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +VVSP
Sbjct: 7 LELLQSVFGYPSFRGQQQAVVEHLAEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSP 66
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A +L+S+ + + ++ L +G+ L LLYV PE T F
Sbjct: 67 LIALMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGE--LNLLYVAPERLLTSRF 124
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L+ I + L AIDEAHC+S WGHDFRP YR+L L P VP +ALTATA P+
Sbjct: 125 LGLLESIE----VALFAIDEAHCVSQWGHDFRPEYRELVVLHQRFPQVPRIALTATADPR 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+++++E L LQ SSF+RPN+ Y V L +A L L+ + D IVYCL
Sbjct: 181 TREEIVERLALQEARRFVSSFDRPNIGYRV---GLRHNAKRQLAEFLQGHQDESGIVYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGID+ D
Sbjct: 238 SRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPD 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S + +
Sbjct: 298 VRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESDDERKRV 357
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R++ ++ Y E + CRR+ +L +FGE
Sbjct: 358 ERQK--------LESLLAYAEATDCRRQLLLGAFGE 385
>gi|390945503|ref|YP_006409263.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
gi|390422072|gb|AFL76578.1| ATP-dependent DNA helicase RecQ [Alistipes finegoldii DSM 17242]
Length = 730
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 178/408 (43%), Positives = 245/408 (60%), Gaps = 30/408 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALIMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ + GIA FL+S+ ++ D+ SGK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSADSGIA-HFLNSSLNKTAVAQVRADVLSGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLHKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGPAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHNVD---RDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ D ++ R V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIKALAYHAGMDAATRAANQDHFLMERADVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE---- 348
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + V Y E S CRRK +L FGE+
Sbjct: 349 ----KFMQGKPIAEQEIGKLL--LLETVSYAESSMCRRKTLLHYFGEE 390
>gi|374598547|ref|ZP_09671549.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|423323213|ref|ZP_17301055.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
gi|373910017|gb|EHQ41866.1| ATP-dependent DNA helicase, RecQ family [Myroides odoratus DSM
2801]
gi|404609764|gb|EKB09128.1| ATP-dependent DNA helicase RecQ [Myroides odoratimimus CIP 103059]
Length = 731
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 249/402 (61%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG +QF+ Q D +++++SG + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKRFFGFSQFKGLQEDVVKSIISGHNTFVIMPTGGGKSLCYQLPALVLDGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E+GIA L+S+ T ++ ED+ G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSTEQGIA-HVLNSSLTKTEVNQVKEDIKQG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+++ L+++ L+ VAIDEAHCIS WGHDFRP YR L ++ L D+PI+ LTA
Sbjct: 125 TKEEYVNFLQEVK----LSFVAIDEAHCISEWGHDFRPEYRNLRNIIRQLGDIPIIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + N V K+SFNRPNL+YE++ K + +D+ +K
Sbjct: 181 TATPKVQEDILKNLEIPNANVFKASFNRPNLYYEIKPK--TKNIESDIIRFIKQRKGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIANVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E ++
Sbjct: 299 IDKPDVRYVIHHDIPKSLESYYQETGRAGRDGGEGWCLAYYSYKDIEKLEKFMA------ 352
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + +E I+ ++V Y E S RRK +L FGE+
Sbjct: 353 GKPIAEQEI----GIALLQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|302755182|ref|XP_002961015.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
gi|300171954|gb|EFJ38554.1| hypothetical protein SELMODRAFT_402571 [Selaginella moellendorffii]
Length = 935
Score = 327 bits (838), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 182/402 (45%), Positives = 250/402 (62%), Gaps = 27/402 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG++ FR Q + IQ +L GRDC +M TG GKS+CYQIP L +V+S
Sbjct: 1 MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV+GLK +GI E+L S QT K ED +G+ +LY+TPE
Sbjct: 61 PLISLMQDQVMGLKLRGIKAEYLGSAQT----DKTVED-KAGRGEYDILYMTPEKACGTT 115
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ S L SRG+ +L+A+DEAHCIS WGHDFRP Y++LSS+R+ LP+VP +ALTATA
Sbjct: 116 WTSLL----SRGV-SLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATH 170
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV----RYKDLLDDAYADLCSVLKANGDTCA 261
KV++D+++SL L N + SSF+RPN+ Y V R ++ ++ L+ G T
Sbjct: 171 KVREDILKSLMLTNAYIAVSSFDRPNILYGVKPLTRSNAFREELATEVVKDLEQGGST-- 228
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC DE++ L G + AYH+ L K R+ V ++ QVVVATVAFGMG
Sbjct: 229 IVYCNTIKDVDEVTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMG 288
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ D+R V H+ PKS+E++YQESGR GRD LPS LY+ D R EF S+
Sbjct: 289 IDKPDIRRVIHYGCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEFYTSE----- 343
Query: 382 SQSFSTRERSSKKSISD-FSQMVDYCEGSGCRRKKILESFGE 422
T+ER KK+++D F+ YC + CRRK IL+ FGE
Sbjct: 344 ---VRTQER--KKAVADAFAASQGYCTTTTCRRKFILQYFGE 380
>gi|288800855|ref|ZP_06406312.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 299 str.
F0039]
gi|288332316|gb|EFC70797.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 299 str.
F0039]
Length = 725
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 241/401 (60%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG F+ Q I+ +L G+D F LMPTGGGKS+CYQ+P+L G+ +V+S
Sbjct: 7 LTEKLKQYFGFDTFKGDQEAIIRNLLDGKDSFVLMPTGGGKSLCYQLPSLIMDGVAVVIS 66
Query: 86 PLIALMENQV---IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +++S+ T++ D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEENGVAHYINSSLNKAAITQVMADIRSGKT--KLLYVAPESLI 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
P + LK + ++ AIDEAHCIS WGHDFRP YR + + N + + P++ALTAT
Sbjct: 125 KPENVEFLKTVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPMINNIGEAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNR NL+YEVR K +D +L +K N I
Sbjct: 181 ATDKVRTDIKKSLGILDAKEFKSSFNRANLYYEVRPK--TNDVDKELIKFIKKNEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R +ELSA L A I AAYHAGL++ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 VYCLSRKKVEELSAILQANNIKAAAYHAGLDNIPRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E K
Sbjct: 299 DKPDVRFVVHYDIPKSLEGYYQETGRAGRDGGEGHCLAFYSYKDIQKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 351 EGKPVAEQDIGRQL--LKETAAYAESSVCRRKMLLHYFGEE 389
>gi|195329754|ref|XP_002031575.1| GM26077 [Drosophila sechellia]
gi|194120518|gb|EDW42561.1| GM26077 [Drosophila sechellia]
Length = 1268
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 240/401 (59%), Gaps = 11/401 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 506 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 565
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 566 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 625
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 626 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 685
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 686 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPAHFSGII 744
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + GI +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 745 YCLSRKECDETSKKMCKDGIRAVSYHAGLTDTERESRQKDWLTGKIRVICATVAFGMGID 804
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L ++
Sbjct: 805 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDMADCILYYNYSDMLRIKKMLDSDK----- 859
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K + + ++V YCE + CRR + L+ FGE
Sbjct: 860 --ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEH 898
>gi|17366086|sp|Q9I920.1|BLM_CHICK RecName: Full=Bloom syndrome protein homolog; AltName: Full=RecQ
helicase homolog
gi|8567899|dbj|BAA96742.1| Gd BLM [Gallus gallus]
Length = 1142
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 181/429 (42%), Positives = 247/429 (57%), Gaps = 19/429 (4%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++++S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 415
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 416 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 475
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 476 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 535
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 536 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 595
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 596 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGE 715
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 413
S LL+Y D R+ ++ + NS + T ++ MV YCE CRR
Sbjct: 716 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVDCRR 768
Query: 414 KKILESFGE 422
++L FGE
Sbjct: 769 IQLLAYFGE 777
>gi|404449892|ref|ZP_11014879.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
gi|403764371|gb|EJZ25272.1| ATP-dependent DNA helicase RecQ [Indibacter alkaliphilus LW1]
Length = 726
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/397 (43%), Positives = 240/397 (60%), Gaps = 24/397 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG +QFR Q + VL G + F +MPTG GKS+CYQ+PA+ + G +V+SPLIA
Sbjct: 9 LKRIFGFSQFRGNQEPIVDNVLRGNNTFVIMPTGAGKSLCYQLPAVIQDGTAIVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG--F 146
LM+NQV L GI FL+ST K+ +++ SGK +LLYV PE LT F
Sbjct: 69 LMKNQVDQLNAFGINAHFLNSTLNKTETNKVKKEVLSGKT--KLLYVAPESLTKEENVLF 126
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAP 205
+ K L+ VAIDEAHCIS WGHDFRP YRK+ ++ + ++PI+ALTATA P
Sbjct: 127 LKDAK-------LSFVAIDEAHCISEWGHDFRPEYRKIKTIIAQIGSNLPIVALTATATP 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D+ +L ++ + KSSFNR NL+YEVR K + ++ + +K+ I+YC
Sbjct: 180 KVQQDIQRNLQMEEADLFKSSFNRTNLYYEVRPK-VKNETKKQIIKYIKSQKGKSGIIYC 238
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++ L GI A YHAGL R DD+++ V+VAT+AFGMGID+
Sbjct: 239 LSRKKVEEIANLLKVNGIKAAPYHAGLEQNVRVKNQDDFLNEEVDVIVATIAFGMGIDKP 298
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++PKS+E +YQE+GRAGRD L L++Y DD ++E K ++
Sbjct: 299 DVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYDDIVKLE--------KFNKDK 350
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + K + +M Y E S CRRK +L FGE
Sbjct: 351 PVTERENAKIL--LQEMAAYAESSICRRKFLLHYFGE 385
>gi|374594551|ref|ZP_09667555.1| ATP-dependent DNA helicase RecQ [Gillisia limnaea DSM 15749]
gi|373869190|gb|EHQ01188.1| ATP-dependent DNA helicase RecQ [Gillisia limnaea DSM 15749]
Length = 701
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 242/402 (60%), Gaps = 25/402 (6%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ L+ L+ +FG FR Q I +V +G D +MPTGGGKS+C+Q+PA+ P I
Sbjct: 2 EEMQLLSTLKEYFGFESFRPLQRKIIDSVFAGDDNLVIMPTGGGKSICFQLPAILLPKIT 61
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
LV+SPLIALM++QV GL GI+ FL+S+Q + + I++ +D K L+LLYV PE L
Sbjct: 62 LVISPLIALMKDQVDGLTANGISAAFLNSSQAFEDQQAIFQQIDENK--LKLLYVAPESL 119
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
F+S G ++L+AIDEAHCISSWGHDFRP+Y +L L+N P P++ALT
Sbjct: 120 QVIDRFLSD-------GKVSLIAIDEAHCISSWGHDFRPAYTQLGYLKNRFPSTPLIALT 172
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA +KD+ L + +SF+R NL EVR D D +KA +
Sbjct: 173 ATADKATRKDICNQLNIPGAKKHVASFDRKNLSLEVRPGTKRFDQIVDF---IKARKNES 229
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R ++++A L A G+ AYHAGL+ R+ + DD+I+ KQ++ AT+AFGM
Sbjct: 230 GIIYCLSRKNTEDIAAKLKANGLQAEAYHAGLSHLERTKIQDDFINDTKQIICATIAFGM 289
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ ++R V H+N+PK++E +YQE GRAGRD LPS ++L++ D ++
Sbjct: 290 GIDKSNIRWVIHYNMPKNLEGYYQEIGRAGRDGLPSDTMLFHSYADVVQL---------- 339
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q F+T + ++ +M Y E CRRK +L FGE
Sbjct: 340 --QKFATNSGNEAVQLAKLDRMKQYSEALTCRRKILLNYFGE 379
>gi|448097267|ref|XP_004198627.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
gi|359380049|emb|CCE82290.1| Piso0_002008 [Millerozyma farinosa CBS 7064]
Length = 1415
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 260/445 (58%), Gaps = 42/445 (9%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI + L+GRD F LMPTGGGKS+CYQ+PAL G +V+SPLI+LM++Q
Sbjct: 741 FRPNQLEAIVSTLNGRDVFVLMPTGGGKSLCYQLPALISSGKTRGTTIVISPLISLMQDQ 800
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKI 153
V L K I +SS + + E +G+ L+L+Y++PE+ T + ++ ++
Sbjct: 801 VQHLLHKNIRAGMISSKGSAAERKSTLEQFRNGE--LQLVYLSPEMVNTSQHIQRIIARL 858
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L V +DEAHC+SSWGHDFRP Y+ +S + P VP++ALTATA KV+ D++
Sbjct: 859 YESRQLARVVVDEAHCVSSWGHDFRPDYKGMSLFKQQFPQVPVIALTATANEKVRMDIVH 918
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLER 268
L + +P++LK SFNR NLFYE+++K D + D +L + I+YC +
Sbjct: 919 HLQMSDPVLLKQSFNRTNLFYEIKWKAANFLDWIRDY------ILTKQQNKTGIIYCHSK 972
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ + L+ G+ C+ YHAGL+ R + DW +R QV+ AT+AFGMGID+ DVR
Sbjct: 973 QSCEVTADRLNQWGVRCSYYHAGLSPTERFQIQTDWQQNRIQVICATIAFGMGIDKPDVR 1032
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H IP+S+E +YQE+GRAGRD LPS+ +++Y D R ++ ++ ++ S
Sbjct: 1033 FVIHLFIPRSLEGYYQETGRAGRDGLPSECIMFYSYKDARSLQNMIQRD--------SEL 1084
Query: 389 ERSSKKS-ISDFSQMVDYCEG-SGCRRKKILESFGEQV--------------LGCVASVT 432
+R K+S ++ Q+V YCE S CRRK++L F E+ +V
Sbjct: 1085 DREGKESHLAKLRQVVQYCENTSDCRRKQVLHYFNERFDPAHCARKCDNCLNNNSANAVI 1144
Query: 433 HRVVSFISPFILLISSSKTDTCIIM 457
H V ++ + L+ S + D ++
Sbjct: 1145 HDVTAYAKDILSLVESLQGDKVTVL 1169
>gi|30692489|ref|NP_174421.2| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
gi|75334308|sp|Q9FT73.1|MED34_ARATH RecName: Full=Mediator of RNA polymerase II transcription subunit
34; AltName: Full=ATP-dependent DNA helicase Q-like 2;
AltName: Full=RecQ-like protein 2; Short=AtRecQ2;
Short=AtRecQl2
gi|11121445|emb|CAC14866.1| DNA Helicase [Arabidopsis thaliana]
gi|332193225|gb|AEE31346.1| ATP-dependent DNA helicase Q-like 2 [Arabidopsis thaliana]
Length = 705
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 172/400 (43%), Positives = 245/400 (61%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + SS NRPNLFY VR K L+ D A+ +N ++ IVYC R
Sbjct: 265 EMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ R V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ +L++ D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLGC 427
E S +++ D +V YC+ + CRR FGE C
Sbjct: 432 EYSGLQNLYD---IVRYCQSKTKCRRSAFFRHFGEPSQDC 468
>gi|449516333|ref|XP_004165201.1| PREDICTED: mediator of RNA polymerase II transcription subunit
34-like [Cucumis sativus]
Length = 586
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 174/407 (42%), Positives = 245/407 (60%), Gaps = 23/407 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + + AV+SGRD +M GGGKS+CYQ+PAL GI LVVSPL++L+++
Sbjct: 86 FGISSYRANQREIVNAVMSGRDVLVIMAAGGGKSLCYQLPALLYDGIALVVSPLLSLIQD 145
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+S + + + IY++L+ G+ S+++LYVTPE ++ + FMSKL+K
Sbjct: 146 QVMGLAALGISASMLTSATSKEDEKLIYKNLEKGEGSMKILYVTPEKVSKSKRFMSKLEK 205
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+L+AIDEAHC S WGHDFRP Y+ L L+ P+ P++ALTATA +VQ D++
Sbjct: 206 CYHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKTQFPNAPVIALTATATQRVQNDLV 265
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY VR K ++ D A+ N ++ I+YC R
Sbjct: 266 EMLRIPKYVKFVSTVNRPNLFYMVREKSSVSKVVIDQIAEFIQESYPNNES-GIIYCFSR 324
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +SR QV+V TVAFGMGI++ DVR
Sbjct: 325 KECEQVAKELRLRGISADHYHADMDSVAREKVHMRWSNSRLQVIVGTVAFGMGINKPDVR 384
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ LLYY D R ++ S
Sbjct: 385 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYYRPGDVPRQSSMVFYENS--------- 435
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLGCVAS-VTH 433
+ + +V YC+ CRR F E + C VTH
Sbjct: 436 ------GLENLYGIVQYCQSRRQCRRSVFFRHFAEPLKDCNGCFVTH 476
>gi|357113938|ref|XP_003558758.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Brachypodium
distachyon]
Length = 704
Score = 327 bits (838), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 244/401 (60%), Gaps = 24/401 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I +++SG+D +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 85 FGISSYRSNQREIINSIMSGKDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ IY+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLTALGIPAYMLTSTTNKEVEKLIYKALEKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+LVAIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNL+Y+V K ++ D A+ + N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTVNRPNLYYKVYEKSSVGKVVIDEIANFITESYPNKES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GI+ YHA ++ AR V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGIAADYYHADMDSVAREKVHMRWSKSKSQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQSKNSQSFST 387
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R+ + +N
Sbjct: 384 FVVHHSLSKSMETYYQESGRAGRDGLPSECVLYYRPGDVPRQSSMVFYENC--------- 434
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLGC 427
+ + +V YC+ CRR + FGE V C
Sbjct: 435 -------GLQNLYDIVRYCQSKKSCRRGAFFQHFGEAVQEC 468
>gi|189463687|ref|ZP_03012472.1| hypothetical protein BACINT_00018 [Bacteroides intestinalis DSM
17393]
gi|189438637|gb|EDV07622.1| ATP-dependent DNA helicase RecQ [Bacteroides intestinalis DSM
17393]
Length = 727
Score = 327 bits (838), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 244/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLMMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAEVFKSSFNRPNLYYEVRPK--TNNIDRDIIKFIKNNSEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEEYL 392
>gi|374853612|dbj|BAL56515.1| ATP-dependent DNA helicase RecQ [uncultured Bacteroidetes
bacterium]
Length = 717
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 245/400 (61%), Gaps = 20/400 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KEAL + +FG+ FR Q + I+ +L G++ +MPTG GKS+CYQ+PAL PG L
Sbjct: 5 KEALER----YFGYKSFRQPQEEIIRTLLEGKNVMVIMPTGAGKSLCYQLPALLLPGTAL 60
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM+NQV ++ I FL+S+ + + ++ GK ++LLYV PE
Sbjct: 61 VVSPLIALMKNQVDQMQAYDIPAAFLNSSLSRREYEEVKRACLQGK--VKLLYVAPETLL 118
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ F L ++ ++ VA+DEAHCIS WGHDFRP YR++ LP +PI+ALTAT
Sbjct: 119 SESFAEVLAQLQ----ISFVAVDEAHCISEWGHDFRPEYRRIRHALRDLPPMPIIALTAT 174
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P+VQ+D++E+L + + +V ++SFNRPNL+Y++ K ++ +++ I
Sbjct: 175 ATPRVQRDILENLEILDAVVFRTSFNRPNLYYQITPKRSHQATLKEIVQYIRSRPGQAGI 234
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R ++++ L A GI YHAG++ R+ D +++ QV+VAT+AFGMGI
Sbjct: 235 VYCHSRRRVEDVANILQANGIKALPYHAGMDAATRTRNQDAFLNEEIQVIVATIAFGMGI 294
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V HF++PKS+E +YQE+GRAGRD LP+ +LYY +D IL ++
Sbjct: 295 DKPDVRFVIHFDVPKSIENYYQETGRAGRDGLPADCILYYDYND------ILKLDRFLKD 348
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S RE + +M +CE CRRK +L+ FGE
Sbjct: 349 KPASERE----AIVFLLQEMAYFCETGQCRRKFLLQYFGE 384
>gi|365961574|ref|YP_004943141.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
gi|365738255|gb|AEW87348.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium columnare ATCC
49512]
Length = 731
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 246/405 (60%), Gaps = 31/405 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q +++++S + F +MPTGGGKS+CYQ+PAL + G+ +VVS
Sbjct: 8 LHKELKKYFGFSQFKGLQEQVVKSIVSRENTFVIMPTGGGKSLCYQLPALIQEGVAIVVS 67
Query: 86 PLIALMENQVIGLKEKG-------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV L+ G + L+ T+ QVK +D+ SG +LLYV P
Sbjct: 68 PLIALMKNQVDALRSLGSGDAIAHVLNSSLNKTEINQVK----KDIASG--FTKLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E ++ LK+ H ++ VAIDEAHCIS WGHDFRP YR L ++ L ++PI+
Sbjct: 122 ESLTKEEYIDFLKE-HK---ISFVAIDEAHCISEWGHDFRPEYRNLRNIIRALGEIPIIG 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D++++L + + V K+SFNRPNLFYEVR K + AD+ +K +
Sbjct: 178 LTATATPKVQEDILKNLEMSDANVFKASFNRPNLFYEVRTK--TKNVEADIIRFIKQHKG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
++YCL R +E++ L GIS YHAGL+ K R+ D ++ VVVAT+AF
Sbjct: 236 KSGVIYCLSRKKVEEIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKN 377
GMGID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K
Sbjct: 296 GMGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMAGKP 355
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ F+ ++V Y E S RRK +L FGE
Sbjct: 356 IAEQEVGFAL-----------LQEVVSYAETSMSRRKFLLHYFGE 389
>gi|347800747|ref|NP_001007088.2| Bloom syndrome protein homolog [Gallus gallus]
Length = 1380
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 248/429 (57%), Gaps = 19/429 (4%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 594 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 653
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 654 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIASTYLTGDITDAD 713
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ +++R LL IDEAHC+S WGH
Sbjct: 714 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYNRKLLARFVIDEAHCVSQWGH 773
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 774 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 833
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 834 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 893
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 894 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 953
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 413
S LL+Y D R+ ++ + NS + T ++ MV YCE CRR
Sbjct: 954 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVDCRR 1006
Query: 414 KKILESFGE 422
++L FGE
Sbjct: 1007 IQLLAYFGE 1015
>gi|149371063|ref|ZP_01890658.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
gi|149355849|gb|EDM44407.1| ATP-dependent DNA helicase recQ [unidentified eubacterium SCB49]
Length = 697
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 248/402 (61%), Gaps = 25/402 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
++V LL+ HFG+ FR Q + I VL +D +MPTGGGKS+C+Q+PALA G +V+
Sbjct: 8 SIVSLLKTHFGYDSFRPNQEEIINTVLEAKDVLAIMPTGGGKSLCFQLPALALNGTAIVI 67
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L GI+ + +STQ + + I E L + + L+L+YV PE +
Sbjct: 68 SPLIALMKDQVDALNANGISAAYYNSTQPQEEQAAILEKLITRQ--LKLIYVAPE--SIW 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L KI +NL+A+DEAHCISSWGHDFRP+Y +LS L+ P PI+ALTATA
Sbjct: 124 SLTNHLSKIE----INLIAVDEAHCISSWGHDFRPAYTQLSRLKQEFPGTPIIALTATAD 179
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKANGDTCAIV 263
Q D+++ L + N SSF+RPN++ +VR ++ ++ Y L S G I+
Sbjct: 180 RATQDDILDQLKISNAKRFVSSFDRPNIYLDVRPGQNRINHIYKFLSS----RGLQSGII 235
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + + ++A L G AAYHAGL+ + RS + +D+I+ R ++VAT+AFGMGID
Sbjct: 236 YCLSRKSTESITAKLKTKGYDAAAYHAGLSAEDRSQIQEDFINDRTPIIVATIAFGMGID 295
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GR GRD L +++L++Y D +L K
Sbjct: 296 KSNVRWVIHYNMPKNIEGYYQEIGRGGRDGLKARALMFYSYADV----LMLRK------- 344
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
F+ + + ++ +M + E CRRK +L FGEQ++
Sbjct: 345 -FAEGTPTQEFQLAKLERMQQFSESLNCRRKALLSYFGEQLI 385
>gi|328707887|ref|XP_001947908.2| PREDICTED: Bloom syndrome protein homolog [Acyrthosiphon pisum]
Length = 1128
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 242/410 (59%), Gaps = 13/410 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ + + FG FR Q +AI A L G +CF LMPTGGGKS+CYQ+PA+ GI +V+S
Sbjct: 386 LLAVFKKTFGLRHFRPNQFEAINAALLGHNCFILMPTGGGKSLCYQLPAVILKGITVVIS 445
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q LK I L S+ T + IY +L P L+LLYVTPE + A+
Sbjct: 446 PLKSLIIDQTQKLKSLDIPAAHLLSSITPDEENTIYSELWGADPGLKLLYVTPEKVAASN 505
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L +H R LL + IDEAHC+S WGHDFRP Y++L + +VPI+ALTATA
Sbjct: 506 KLIQVLNNLHCRNLLARIVIDEAHCVSQWGHDFRPDYKRLGVFKQNYQNVPIMALTATAT 565
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+KDV+ L ++ SSFNRPNL YEV K + ++ ++K+ I+
Sbjct: 566 QRVRKDVLHQLNIEETKWFVSSFNRPNLVYEVIPKKG-KSSLLEIAKLIKSKFARQSGII 624
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC+ + CD + ++S GI +YHAGL DK R+ V W S++ VV AT+AFGMGID
Sbjct: 625 YCMTKKECDNTAIFMSGEGIKAVSYHAGLTDKKRNDVQMQWTSNKSNVVCATIAFGMGID 684
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+S+E FYQESGRAGRD + L+YY D R++ ++ +
Sbjct: 685 KPDVRYVIHYSLPQSIEGFYQESGRAGRDGDVAYCLIYYNYSDMHRIKKLI---EIGGGA 741
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQV--LGCVAS 430
++ T+ K + ++V YCE CRR L F EQ C+A+
Sbjct: 742 TYETK----KVRFHNLCRIVSYCENKMDCRRAMQLNYFDEQFDKAQCIAN 787
>gi|319643550|ref|ZP_07998171.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
gi|345518434|ref|ZP_08797885.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|254835825|gb|EET16134.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|317384814|gb|EFV65772.1| ATP-dependent DNA helicase [Bacteroides sp. 3_1_40A]
Length = 605
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 241/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILVQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+++ L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIVQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKMRTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T + ++ +M Y E CRR+ +L FGE
Sbjct: 341 FATESSQQEINLEKLHRMQQYAESDICRRRILLNYFGE 378
>gi|94264239|ref|ZP_01288034.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
gi|93455350|gb|EAT05554.1| ATP-dependent DNA helicase RecQ:ATP-requiring DNA helicase RecQ
[delta proteobacterium MLMS-1]
Length = 605
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 166/395 (42%), Positives = 240/395 (60%), Gaps = 18/395 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ LR FG+ FR +Q + ++ +L G D F LMPTGGGKS+CYQ+PAL +PG+ +VVSPL
Sbjct: 6 RTLRDVFGYDSFRPQQQEIVERLLGGGDAFVLMPTGGGKSLCYQLPALHRPGLAVVVSPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ F +S ++ + G+ L LLYV PE F+
Sbjct: 66 ISLMKDQVDALRANGVRAAFYNSALGADEARRVLARMHDGQ--LDLLYVAPERLLHSDFL 123
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L ++ L L AIDEAHCIS WGHDFRP Y KL LR P VP++ALTATA P
Sbjct: 124 GRLGQLK----LALFAIDEAHCISQWGHDFRPEYTKLGLLRQNFPGVPLIALTATAEPHT 179
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ L + + +SF+RPN+ Y VR K + L + + + IVYCL
Sbjct: 180 RRDILARLQIADEAAFITSFDRPNIRYTVRDKK---RPFDQLLAFVGSRPREAGIVYCLS 236
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E++A L+A G + AYHAGL + R + D ++ ++VATVAFGMGID+ ++
Sbjct: 237 RKRVEEVTARLNAAGFAARAYHAGLGAEEREAAQDAFLRDDTLIIVATVAFGMGIDKSNI 296
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H++IPK++E +YQE+GRAGRD LP+++LL +G D +++ NSQ+
Sbjct: 297 RYVVHYDIPKNIEGYYQETGRAGRDGLPAEALLLFGFGD-----VAVARGLIDNSQNEER 351
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R S K + MV + + SGCRR+ +L FGE
Sbjct: 352 RRVESHK----LNAMVGFAQASGCRRRVLLGYFGE 382
>gi|302789379|ref|XP_002976458.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
gi|300156088|gb|EFJ22718.1| hypothetical protein SELMODRAFT_105080 [Selaginella moellendorffii]
Length = 711
Score = 327 bits (837), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 172/400 (43%), Positives = 242/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + + A++S ++ +M GGGKS+CYQ+PAL +PGI LVVSPL++L+++
Sbjct: 73 FGISTYRRNQREIVNALMSNKNVVVVMAAGGGKSLCYQLPALLRPGIALVVSPLLSLIQD 132
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
QV+GL G++ L+ST + + + +IY L+ G +LR+LYVTPE A + FMSKL+K
Sbjct: 133 QVMGLAALGVSAAMLTSTTSKEEEKEIYRVLEKGDGNLRILYVTPEKIAKSKRFMSKLEK 192
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L+LVAIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA +VQ+D+
Sbjct: 193 CNRAGRLSLVAIDEAHCCSQWGHDFRPDYKNLGILKKQFPKVPMIALTATATGRVQRDLQ 252
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKAN--GDTCAIVYCLERT 269
E L + SS NRPNLFYEVR K + D D+ +K + IVYC R
Sbjct: 253 EMLQILPCERFTSSVNRPNLFYEVRDKKQVAADVIEDIALFIKETYPSNESGIVYCFSRK 312
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L IS A YHA ++ R++V W S++ QV+V TVAFGMGI++ DVR
Sbjct: 313 ECEQVADALRKRQISAAHYHADMDSGLRTNVHRRWSSNQLQVIVGTVAFGMGINKPDVRF 372
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQSFSTR 388
V H + KS+E +YQESGRAGRD LPS+ +L++ D R + S+N
Sbjct: 373 VIHHTLSKSLETYYQESGRAGRDGLPSRCVLFFRPADVPRQSCMVFSEN----------- 421
Query: 389 ERSSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQVLGC 427
+ + M YC+ CRR + F EQV C
Sbjct: 422 -----TGLQNLYAMARYCQSKQRCRRAAFFQYFAEQVQEC 456
>gi|390943602|ref|YP_006407363.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390417030|gb|AFL84608.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 725
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 242/394 (61%), Gaps = 18/394 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG +QFR Q + +L G + F +MPTG GKS+CYQ+PA+ K G +V+SPLIA
Sbjct: 9 LKEIFGFSQFRGNQEAIVDNILGGSNTFVIMPTGAGKSLCYQLPAVIKNGTAVVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI FL+ST K+ +++ +G + +LLYV PE +
Sbjct: 69 LMKNQVDQLNAFGINAYFLNSTLNKSETNKVKKEVLAG--NTKLLYVAPESLTKEENVKF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQ 208
LK+ + ++ VAIDEAHCIS WGHDFRP YR++ S+ + + +PI+ALTATA PKVQ
Sbjct: 127 LKEAN----ISFVAIDEAHCISEWGHDFRPEYRRIKSIIAQIGEKLPIIALTATATPKVQ 182
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ +L ++ + KSSFNR NL+YEVR K + ++ + +K I+YCL R
Sbjct: 183 QDIQRNLQMEEADLFKSSFNRTNLYYEVRPK-IKNETKKQIIKYIKGQKGKSGIIYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E+++ L GI+ A YHAGL+ R DD+++ V+VAT+AFGMGID+ DVR
Sbjct: 242 KKVEEIASLLKVNGINAAPYHAGLDQNVRIKNQDDFLNEELDVIVATIAFGMGIDKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PKS+E +YQE+GRAGRD L L++Y DD +++ K ++
Sbjct: 302 YVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYKYDDIIKLD--------KFNKDKPVT 353
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + K + +M Y E S CRRK +L FGE
Sbjct: 354 ERENAKIL--LQEMAAYAESSICRRKTLLHYFGE 385
>gi|157278040|ref|NP_001098120.1| Bloom syndrome helicase [Oryzias latipes]
gi|140083401|gb|ABO84823.1| Bloom syndrome helicase [Oryzias latipes]
Length = 1393
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 177/408 (43%), Positives = 242/408 (59%), Gaps = 17/408 (4%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H +E ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA PG+
Sbjct: 630 HSQE-MMKIFHKRFGLHQFRFNQLEAINAALLGEDAFVLMPTGGGKSLCYQLPACVSPGV 688
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPL +L+ +Q+ L I LS ++ +IY L P ++LLYVTPE
Sbjct: 689 TVVVSPLKSLIVDQIQKLTTLDIPATSLSGDKSDSEAGRIYMQLSRKDPLIKLLYVTPEK 748
Query: 141 TATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ G +S L+ ++ RGLL IDEAHC+S WGHDFRP +++L LR P V ++AL
Sbjct: 749 VSASGRLISALQNLYERGLLARFIIDEAHCVSQWGHDFRPDFKRLHELRQKFPSVRMMAL 808
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA P+VQKD++ L + P V SFNR NL Y V + K + +D + + K
Sbjct: 809 TATATPRVQKDILNQLNMMRPQVFTMSFNRSNLKYSVLPKKPKKVDEDC---IGWIKKHY 865
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVAT 315
IVYCL R CD ++ L GI +YHAGL+D R V WI+ QV+ AT
Sbjct: 866 PRDSGIVYCLSRNDCDAMAESLKRAGIQALSYHAGLSDGDREYVQSKWINQDGCQVICAT 925
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ I+S
Sbjct: 926 IAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGEISHCILFYSYTDVHRIKRIIS 985
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
++ +S + +T ++ MV +CE CRR ++L FGE
Sbjct: 986 MDREGDSHTKATH-------FNNLHSMVHFCENVMECRRIQLLAYFGE 1026
>gi|311746386|ref|ZP_07720171.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
gi|126575272|gb|EAZ79604.1| ATP-dependent DNA helicase RecQ [Algoriphagus sp. PR1]
Length = 725
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/401 (43%), Positives = 244/401 (60%), Gaps = 18/401 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+E + + L+ FG +QFR Q + +L R+ F +MPTG GKS+CYQ+PA+ G +
Sbjct: 2 EEKVKEDLKKIFGFSQFRGNQEPIVDNLLGHRNTFVIMPTGAGKSLCYQLPAVVSNGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV LK GI FL+ST TK+ ++ S K +LLYV PE
Sbjct: 62 VISPLIALMKNQVDQLKAIGINAHFLNSTLNKSESTKVKNEVLSKKT--KLLYVAPESLT 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ LK L+ VAIDEAHCIS WGHDFRP YRK+ ++ + P++PI+ALTA
Sbjct: 120 KEENIAFLKSAE----LSFVAIDEAHCISEWGHDFRPEYRKIKTIVAQIAPNLPIIALTA 175
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ +L ++ + KSSFNR NLFYEVR K + +++ L +K +
Sbjct: 176 TATPKVQQDIQRNLQMEEADLFKSSFNRTNLFYEVRPK-MKNESKKQLIKFIKNHKGKSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L I+ A YHAGL+ R DD+++ V+VAT+AFGMG
Sbjct: 235 IIYCLSRKKVEEIAQLLQVNQINAAPYHAGLDSAIRIKNQDDFLNEELDVIVATIAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E K
Sbjct: 295 IDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIVKLE--------KF 346
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ ER + + + +M Y E CRRK IL FGE
Sbjct: 347 NKDKPVTERENARVL--LHEMAAYAETGVCRRKFILNYFGE 385
>gi|90419404|ref|ZP_01227314.1| putative ATP-dependent DNA helicase [Aurantimonas manganoxydans
SI85-9A1]
gi|90336341|gb|EAS50082.1| putative ATP-dependent DNA helicase [Aurantimonas manganoxydans
SI85-9A1]
Length = 632
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 243/402 (60%), Gaps = 23/402 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FGHA FR +Q + V++G D L PTG GKS+CYQIP+L +PG+ +VVSPL
Sbjct: 37 EMLRTVFGHAAFRGQQEAVVDQVVAGGDAVVLFPTGAGKSVCYQIPSLCRPGVGIVVSPL 96
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM +QV GL++ G+ L+S+ + + + + DL +G+ L LLYVTPE + GF
Sbjct: 97 IALMHDQVEGLRQAGVNAASLNSSMSDEERDTVRADLLAGR--LDLLYVTPERIVSEGFR 154
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L ++ + L AIDEAHC+S+WGHDFRP YR L +L + P VP +ALTATA P
Sbjct: 155 RTLSRVR----IALFAIDEAHCVSAWGHDFRPEYRLLETLADDFPSVPRIALTATADPTT 210
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++E L L + V +SF+RPN+ Y + +D + L S L+ + IVYCL
Sbjct: 211 RADIIERLRLTDAPVYMTSFDRPNIRYAIVERD---NPKKQLLSFLERHEGASGIVYCLS 267
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E +A+L+ GI YHAGL+ R++ +++ +VATVAFGMGID+ DV
Sbjct: 268 RRKVEETAAWLNTQGIRALPYHAGLDASVRAANQAAFLNEENLCLVATVAFGMGIDKPDV 327
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKNSQS 384
R V H ++P S+EA+YQE+GRAGRD PS + + YGM D RRRM +Q + ++
Sbjct: 328 RFVAHLDLPSSVEAYYQETGRAGRDGQPSDAWMAYGMQDVVQRRRM-----IDQGGSEET 382
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
ER+ ++ CE + CRR IL FGE G
Sbjct: 383 IKRVERAK------LDALLAICETADCRRAAILAHFGEHHEG 418
>gi|290490724|dbj|BAI79322.1| BLM helicase [Gallus gallus]
Length = 1380
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 182/429 (42%), Positives = 247/429 (57%), Gaps = 19/429 (4%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 594 ISAKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 653
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 654 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 713
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 714 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 773
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 774 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 833
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 834 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 893
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 894 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSIEGYYQESGRAGRDGE 953
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 413
S LL+Y D R+ ++ + NS + T ++ MV YCE CRR
Sbjct: 954 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVDCRR 1006
Query: 414 KKILESFGE 422
++L FGE
Sbjct: 1007 IQLLAYFGE 1015
>gi|389795781|ref|ZP_10198890.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
gi|388430112|gb|EIL87306.1| ATP-dependent DNA helicase RecQ [Rhodanobacter fulvus Jip2]
Length = 605
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 247/400 (61%), Gaps = 17/400 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQ+PAL + G +VVSP
Sbjct: 6 LDLLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQVPALLRQGTGIVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A FL+S+ + ++ L++G+ L LLYV PE T F
Sbjct: 66 LIALMQDQVDALREAGVAAAFLNSSLAAGEQREVERQLEAGE--LNLLYVAPERLLTGRF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+++L++ + L AIDEAHC+S WGHDFRP YR+L+ L+ P VP +ALTATA P+
Sbjct: 124 LAQLERTE----VALFAIDEAHCVSQWGHDFRPEYRELAILQERFPQVPRIALTATADPR 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+++++E L LQN SSF+RPN+ Y V L +A L L + IVYCL
Sbjct: 180 TREEIVERLSLQNARQFVSSFDRPNIGYRV---GLRHNAKRQLGEFLLGHQGESGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGID+ D
Sbjct: 237 SRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQKRFLREDGVVMVATVAFGMGIDKPD 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S + +
Sbjct: 297 VRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRV 356
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
R++ ++ Y E + CRR+ +L +FGE G
Sbjct: 357 ERQK--------LESLLAYAEATDCRRQLLLGAFGESYPG 388
>gi|282898834|ref|ZP_06306821.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
gi|281196361|gb|EFA71271.1| ATP-dependent DNA helicase RecQ [Cylindrospermopsis raciborskii
CS-505]
Length = 719
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 251/407 (61%), Gaps = 18/407 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K + +FG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL KPG+ +VVS
Sbjct: 6 LEKEFKKYFGYDQFRPGQRQIIEDALENRDLMVVMPTGGGKSLCFQLPALLKPGLTVVVS 65
Query: 86 PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PLIALM++QV L+ I+ + SS T QV+++ E + +GK ++LLYV PE +
Sbjct: 66 PLIALMQDQVEALRNNNISATLINSSLTTYQVRSR-EEAIMNGK--VKLLYVAPERLVSE 122
Query: 145 GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L + + GL N V IDEAHC+S WGHDFRP YR+L LR VP +ALTATA
Sbjct: 123 RFLPILDVVKEKFGLANFV-IDEAHCVSEWGHDFRPEYRQLILLRKRFSHVPTIALTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V+ D+++ L L+ P V +SFNR NL+YEVR K+ ++Y ++ ++K N + I+
Sbjct: 182 TDRVRADIIQQLGLKQPAVHIASFNRQNLYYEVRPKN--RNSYGEILEIIKEN-EGSGII 238
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DEL+ L I+ YHAGL D R+ +I +++VAT+AFGMGI+
Sbjct: 239 YCLTRKNVDELTLKLQNSQIAALPYHAGLVDYERAKNQTRFIRDDVRIMVATIAFGMGIN 298
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++P+++E++YQESGRAGRD PS+ L++ D + +E+ + K Q
Sbjct: 299 KPDVRFVIHCDLPRNLESYYQESGRAGRDGEPSRCTLFFSFGDVKTIEWSIGKKTDPQEQ 358
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVAS 430
+ ++ Q++DY EG+ CRR L FGE+ G A+
Sbjct: 359 LIAKQQ---------LRQVIDYAEGTDCRRTIQLGYFGERFPGSCAN 396
>gi|326479495|gb|EGE03505.1| RecQ family helicase MusN [Trichophyton equinum CBS 127.97]
Length = 1531
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 248/404 (61%), Gaps = 17/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+S
Sbjct: 666 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 725
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 726 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 785
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R P VP++ALTAT
Sbjct: 786 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYPGVPVMALTAT 845
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 846 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 905
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 906 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 965
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+
Sbjct: 966 GIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNKET 1025
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ R+R + ++ F CE + CRR +IL F E+
Sbjct: 1026 TYEQ-KQRQRQMLRHVTQF------CENITDCRRAQILAYFDEK 1062
>gi|427385455|ref|ZP_18881762.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
gi|425727099|gb|EKU89960.1| ATP-dependent DNA helicase RecQ [Bacteroides oleiciplenus YIT
12058]
Length = 727
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 244/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLMMEGTGVVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTV----TISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAEVFKSSFNRPNLYYEVRPK--TNNVDRDIIKFIKNNQEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ +
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEEYM 392
>gi|170078505|ref|YP_001735143.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
gi|169886174|gb|ACA99887.1| ATP-dependent DNA helicase [Synechococcus sp. PCC 7002]
Length = 712
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 233/403 (57%), Gaps = 15/403 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ FG+ FR Q I A L RD LMPTG GKS+C+Q+PAL KPG+ +V+
Sbjct: 6 SLEAALKHFFGYDNFRHGQKAVITAALENRDILALMPTGAGKSLCFQLPALLKPGLTVVI 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L + GI FL+ST + Q +++I + +++LLYV PE
Sbjct: 66 SPLIALMQDQVDALTDNGIGATFLNSTLNLDQARSRIQAIFNG---NIKLLYVAPERLFN 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
GF L + L +DEAHC+S WGHDFRP YR+LS +R P P A TATA
Sbjct: 123 EGFQQLLTDVDQTIGLTGFVVDEAHCVSEWGHDFRPEYRQLSRIRRRYPRTPCQAFTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L LQNP +SFNRPNL+YEV K + +Y L ++ I+
Sbjct: 183 TQRVREDIIDQLALQNPSFHCTSFNRPNLYYEVLPK--VRKSYTQLLCYVRQRRGQPGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R DEL+ L G+ YHAGL D+ R+ + +I V+VATVAFGMGI+
Sbjct: 241 YCSSRKKVDELADRLKQDGVKALPYHAGLADRLRADYQEQFIRDDVPVMVATVAFGMGIN 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P ++E +YQESGRAGRD P+ L+Y D +R E+ + +
Sbjct: 301 KPDVRFVVHYDLPTNLERYYQESGRAGRDGEPAHCTLFYRAGDIKRAEYFIELKED---- 356
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
E+ + + +M+DY EG CRR L FGEQ G
Sbjct: 357 -----EQEKRIAYQQLQKMIDYAEGIDCRRTIQLSYFGEQFPG 394
>gi|332291549|ref|YP_004430158.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
gi|332169635|gb|AEE18890.1| ATP-dependent DNA helicase RecQ [Krokinobacter sp. 4H-3-7-5]
Length = 696
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 241/399 (60%), Gaps = 23/399 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L LL+ HFG+ FR Q + I++V G D +MPTGGGKSMC+Q+PALA G+ LV
Sbjct: 5 QELHSLLKTHFGYDNFRPNQQEIIESVCRGDDALVIMPTGGGKSMCFQLPALALDGVALV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV L+ GI + +STQ ++ ++ DL SG ++ L+YV PE
Sbjct: 65 ISPLIALMKDQVDALRANGIRAAYYNSTQPLEETQQVLSDLQSG--AIDLIYVAPE---- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L + ++L+AIDEAHCISSWGHDFRP+Y +L L+ P P++ALTATA
Sbjct: 119 --SLQMLDGALNAATISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRFPQAPLIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
Q D+ + L + N SSF+RPNL+ +VR +D D L+ + I+
Sbjct: 177 DRSTQDDIADQLGISNAKKYVSSFDRPNLYLDVRPGQKRNDQILDF---LEEHPGESGII 233
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + + L+A L A G AAYHAG++ + RS V +D+I+ ++ AT+AFGMGID
Sbjct: 234 YCLSRKSTESLAAKLQANGYKAAAYHAGMHAEQRSKVQEDFINDTTPIICATIAFGMGID 293
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GRAGRD LP+ +LL+Y D ++ +
Sbjct: 294 KSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLPAHTLLFYSYADTLQL------------R 341
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F +++ ++ +M Y E CRRK ++ FGE
Sbjct: 342 QFIDGAKNADYQMAKLDRMQQYAEALSCRRKVLINYFGE 380
>gi|297851930|ref|XP_002893846.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
gi|297339688|gb|EFH70105.1| RECQL2 [Arabidopsis lyrata subsp. lyrata]
Length = 704
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/431 (40%), Positives = 259/431 (60%), Gaps = 23/431 (5%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWH-FGHAQFRDKQLDAIQAVLSGRDCFCLMPT 62
SP+A ++ + E ++ +R++ FG +++R Q + I A+++GRD +M
Sbjct: 53 SPVASSGSNAIENWSEAFEWDSRADDVRFNVFGISKYRANQKEIINAIMAGRDVLVIMAA 112
Query: 63 GGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GGGKS+CYQ+PA+ + G LVVSPL++L+++QV+GL GI+ L+ST + + +Y+
Sbjct: 113 GGGKSLCYQLPAILRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYK 172
Query: 123 DLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181
L+ G+ L++LYVTPE ++ + FMSKL+K H+ G L+L++IDEAHC S WGHDFRP Y
Sbjct: 173 ALEKGEHDLKILYVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDY 232
Query: 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD- 240
+ LS L+ P VP++ALTATA KVQ D++E L + + SS NRPNLFY VR K
Sbjct: 233 KNLSILKTQFPKVPMVALTATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSA 292
Query: 241 ---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
++ D A+ +N ++ IVYC R C++++ L GIS YHA ++ R
Sbjct: 293 VGKVVVDEIAEFIRESYSNNES-GIVYCFSRKECEQIAGDLRERGISADYYHADMDANMR 351
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
V W ++ QV+V TVAFGMGI++ DVR V H ++ KSME +YQESGRAGRD LPS+
Sbjct: 352 EKVHMRWSKNKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQESGRAGRDGLPSE 411
Query: 358 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 416
+L++ D R S E S +++ D +V YC+ + CRR
Sbjct: 412 CILFFRSADVPRQ------------SSMVFYEYSGLQNLYD---IVRYCQSKTKCRRSAF 456
Query: 417 LESFGEQVLGC 427
FGE C
Sbjct: 457 FRHFGEPSQDC 467
>gi|213408509|ref|XP_002175025.1| ATP-dependent DNA helicase hus2/rqh1 [Schizosaccharomyces japonicus
yFS275]
gi|212003072|gb|EEB08732.1| ATP-dependent DNA helicase hus2/rqh1 [Schizosaccharomyces japonicus
yFS275]
Length = 1283
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 258/406 (63%), Gaps = 21/406 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
L+ LR F FR Q++AI L+G+D F LMPTGGGKS+CYQ+PA+ + G +
Sbjct: 467 LMHTLRTKFQLKGFRKNQIEAINGTLAGKDVFVLMPTGGGKSLCYQLPAVMETGNSRGVT 526
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPL++LM++Q+ L++ I LS Q + ++ L + K ++LLYVTPE
Sbjct: 527 LVISPLLSLMQDQLEHLRKLNIPALPLSGEQPSDERKQVISFLMAKKVQVKLLYVTPEGL 586
Query: 142 ATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
A+ G +S+ L+ +++R LL + IDEAHC+S WGHDFRP Y++L LR+ VP++ALT
Sbjct: 587 ASNGAISRVLESLYTRKLLARIVIDEAHCVSHWGHDFRPDYKQLGILRDKYRGVPVMALT 646
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--D 258
ATA V+KDV+ +L ++N + +KSSFNRPNL+YE++ K D +A++ + +NG D
Sbjct: 647 ATANEIVKKDVITTLRMENCIEMKSSFNRPNLYYEIKPK---KDVFAEMHRFI-SNGRLD 702
Query: 259 TCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL RT+C++++A L + G+ YHAGL+ R + W + +V+VAT+A
Sbjct: 703 QSGIIYCLSRTSCEQVAAKLRNEYGLKAWHYHAGLDKAERQRIQSSWQAGIYKVIVATIA 762
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D + +++
Sbjct: 763 FGMGVDKGDVRYVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDSITFQKLITSG 822
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ T+ER + Q++ +CE S CRRK+IL FGE
Sbjct: 823 EG----DAETKERQRQM----LRQVIQFCENKSDCRRKQILSYFGE 860
>gi|423239789|ref|ZP_17220905.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|392645829|gb|EIY39552.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
Length = 605
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 241/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILTQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+ + L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIAQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T + ++ +M Y E CRR+ +L FGE
Sbjct: 341 FATESSQQEINLEKLHRMQQYAESDICRRRILLNYFGE 378
>gi|212693848|ref|ZP_03301976.1| hypothetical protein BACDOR_03370 [Bacteroides dorei DSM 17855]
gi|237708472|ref|ZP_04538953.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
gi|212663600|gb|EEB24174.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei DSM 17855]
gi|229457401|gb|EEO63122.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 9_1_42FAA]
Length = 605
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 241/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+ + L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIAQQLVLKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTENVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T + ++ +M Y E CRR+ +L FGE
Sbjct: 341 FATESSQQEINLEKLHRMQQYAESDICRRRILLNYFGE 378
>gi|108864717|gb|ABA95535.2| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 766
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 241/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++
Sbjct: 85 FGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D A+ S N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ LS GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E +++ D +V YC+ CRR FGE C
Sbjct: 432 ENCGLQNLYD---IVRYCQSKRSCRRGAFFRHFGEAAQDC 468
>gi|29349252|ref|NP_812755.1| ATP-dependent DNA helicase RecQ [Bacteroides thetaiotaomicron
VPI-5482]
gi|380693604|ref|ZP_09858463.1| ATP-dependent DNA helicase RecQ [Bacteroides faecis MAJ27]
gi|383120164|ref|ZP_09940895.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
gi|29341160|gb|AAO78949.1| ATP-dependent DNA helicase recQ [Bacteroides thetaiotaomicron
VPI-5482]
gi|251837322|gb|EES65422.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_6]
Length = 726
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 244/402 (60%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIIQNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVDFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAK--TNNIDKDIIKFIKNNSEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + +V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSMTRTKNQDDFLMEKVEVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + L +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCLTFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|366995175|ref|XP_003677351.1| hypothetical protein NCAS_0G01110 [Naumovozyma castellii CBS 4309]
gi|342303220|emb|CCC70998.1| hypothetical protein NCAS_0G01110 [Naumovozyma castellii CBS 4309]
Length = 989
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/392 (41%), Positives = 247/392 (63%), Gaps = 20/392 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+AI + LSG+D F LMPTGGGKS+CYQ+PA+ K G +V+SPLI+LM++Q
Sbjct: 351 FRPNQLEAINSTLSGKDVFVLMPTGGGKSLCYQLPAVVKSGRTKGTTIVISPLISLMQDQ 410
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L + I +SS T Q + + + G L L+Y++PE+ +A+ ++ +
Sbjct: 411 VAHLLDLNIKASMISSKGTTQQRKQTFNLFVKG--LLDLIYISPEMISASKQCKRAIQTL 468
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ +G L + +DEAHC+SSWGHDFRP Y++L+ +N P++P++ALTATA V+KD+++
Sbjct: 469 YQQGKLARIVVDEAHCVSSWGHDFRPDYKQLNFFKNEYPNIPMMALTATANEHVRKDIIQ 528
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCD 272
+L L++PL LK SFNR NLFYEVR K D ++ +K I+YC + +C+
Sbjct: 529 NLQLRSPLFLKQSFNRINLFYEVRKK--TKDCMVEIADAIKFQFTGQSGIIYCHSKNSCE 586
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
++SAYL + I YHAG++ R + DW +++ QV+ ATVAFGMGID+ DVR V H
Sbjct: 587 QVSAYLQSKQIRSGFYHAGMDANERLMIQQDWQANKLQVICATVAFGMGIDKPDVRFVYH 646
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
F +P+++E +YQE+GRAGRD PS + YY D R ++ ++ +++ +R++
Sbjct: 647 FTVPRTLEGYYQETGRAGRDGKPSYCITYYSFKDVRTIQKMIQRDKD--------LDRAN 698
Query: 393 K-KSISDFSQMVDYCEG-SGCRRKKILESFGE 422
K K Q++ YC+ CRRK +L F E
Sbjct: 699 KEKHFDKLQQVMSYCDNIHECRRKLVLSYFNE 730
>gi|422015295|ref|ZP_16361894.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
gi|414099460|gb|EKT61101.1| ATP-dependent DNA helicase RecQ [Providencia burhodogranariea DSM
19968]
Length = 608
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 176/396 (44%), Positives = 242/396 (61%), Gaps = 22/396 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L FG+ FR Q I+A+L RD LMPTGGGKS+CYQ+PAL K G+ LVVSPLI
Sbjct: 16 ILNSTFGYQSFRPGQEAVIRAILDNRDSLVLMPTGGGKSLCYQVPALVKDGVTLVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ GI L+S+QT Q + ++ + G +L+LLYV PE T F+S
Sbjct: 76 SLMKDQVDQLRLHGINAACLNSSQTPQEQREVMDSCAQG--NLKLLYVAPERLLTDYFLS 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + + L+A+DEAHCIS WGHDFRP YR L LR + PDVP++ALTATA +
Sbjct: 134 QLANWN----IALLAVDEAHCISQWGHDFRPEYRALGQLRQHFPDVPVMALTATADETTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D++ L L NPLV SSF+RPN+ Y + +YK L L +KA IVYC
Sbjct: 190 ADIIRLLALDNPLVQVSSFDRPNIRYTLVEKYKPL-----EQLWFFIKAQKGKAGIVYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E + L G+S AAYHAGL+ + R V D ++ Q+VVATVAFGMGI++ +
Sbjct: 245 SRNKVEETAERLQKRGLSVAAYHAGLDSQQREWVQDAFLKDNLQIVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q
Sbjct: 305 VRFVAHFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGVQQDI- 363
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER +I+ F+ E CRR +L FGE
Sbjct: 364 --ERHKLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|389798157|ref|ZP_10201184.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
gi|388445812|gb|EIM01870.1| ATP-dependent DNA helicase RecQ [Rhodanobacter sp. 116-2]
Length = 609
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 246/400 (61%), Gaps = 17/400 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + + LL+ FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +
Sbjct: 2 KASALDLLQSVFGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L+E G+A +L+S+ + + ++ L +G+ L LLYV PE
Sbjct: 62 VVSPLIALMQDQVDALREAGVAAAYLNSSLGAEAQREVERQLLAGE--LNLLYVAPERLL 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F L+ I + L AIDEAHC+S WGHDFRP YR+L+ L P VP +ALTAT
Sbjct: 120 TSRFQGLLESIE----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPQVPRIALTAT 175
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A P+ +++++E L LQ+ SSF+RPN+ Y V L +A L L+ + I
Sbjct: 176 ADPRTREEIVERLSLQHARQFVSSFDRPNIGYRV---GLRHNAKRQLGEFLQGHQGESGI 232
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R D+ +A+L+ G+ YHAGL+ R+ ++ V+VATVAFGMGI
Sbjct: 233 VYCLSRRKVDDTAAWLAESGVEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGI 292
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H ++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S +
Sbjct: 293 DKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADE 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ R++ ++ Y E +GCRR+ +L +FGE
Sbjct: 353 RKRVERQK--------LESLLAYAEATGCRRQLLLGAFGE 384
>gi|401626200|gb|EJS44156.1| sgs1p [Saccharomyces arboricola H-6]
Length = 1463
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 163/403 (40%), Positives = 251/403 (62%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR Q++A+ A L+G+D F LMPTGGGKS+CYQ+PAL K G +
Sbjct: 680 LYRLHETFKLPGFRPNQIEAVNATLNGKDVFVLMPTGGGKSLCYQLPALVKSGKTHGTTI 739
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
VVSPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 740 VVSPLISLMQDQVEHLLNKNIKASMFSSKGTAEQRRQTFNLFING--LLDLVYISPEMIS 797
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 798 ASEQCKRAISRLYTDGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 857
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV+ K + ++C +K+N +
Sbjct: 858 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVKKK--TKNTIFEICDAVKSNFKNQT 915
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 916 GIIYCHSKKSCEQTSAQMQKNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 975
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 976 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGKYSYCITYFSFRDIRTMQTMIQKDKNL 1035
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1036 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1071
>gi|440296127|gb|ELP88968.1| ATP-dependent DNA helicase recQ, putative [Entamoeba invadens IP1]
Length = 517
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 168/411 (40%), Positives = 245/411 (59%), Gaps = 25/411 (6%)
Query: 16 KNKPLHE----KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71
K KP++ + L +L F A FR +Q D I + L+ D +MPTGGGKS+C+Q
Sbjct: 9 KTKPINAAVRYDKKLDDVLHNTFHIADFRPQQRDIILSTLNNTDTVVIMPTGGGKSLCFQ 68
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+ ++ I +V+SPLI+LM+N V L +G+ +S+ T +++ L+S P L
Sbjct: 69 LQSVLTNKITIVISPLISLMQNHVDALNARGVVSYIFNSSLTKSEASRVLAILNSTSPEL 128
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
LLYVTPE T F + + K++ G + L AIDEAHCIS WGHDFRPSY +LS L+
Sbjct: 129 YLLYVTPEQIKTQRFQNIMNKLNDNGKIGLFAIDEAHCISQWGHDFRPSYLELSYLKQTF 188
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS 251
P +P++ALTATA KV+ D++++L L++P + S+F+RPN+++ V YKDL ++ +L
Sbjct: 189 PQIPVIALTATATEKVKDDIIKALGLKDPNIFTSTFDRPNIYFRVLYKDLYENPQEELLK 248
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
L + IVYC R C+ L YL + G YHAG++ R SV W +
Sbjct: 249 YLTQHQQEGGIVYCSTRNECELLEKYLKSKGFRVGKYHAGMSASDRESVQKMWERKETGI 308
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
V+ATVAFGMGIDR DVR V H+NIPK++E F QE+GRAGRD P++S++++G DD
Sbjct: 309 VIATVAFGMGIDRSDVRFVVHWNIPKNIEGFIQEAGRAGRDGKPAESVIFFGNDD----- 363
Query: 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
FS R+++ + S+ ++ + C CRRK IL+ F E
Sbjct: 364 -------------FS-RDKALEGEKSE--EIRELCVECVCRRKCILKHFCE 398
>gi|24646066|ref|NP_524319.2| bloom syndrome helicase ortholog [Drosophila melanogaster]
gi|17366114|sp|Q9VGI8.1|BLM_DROME RecName: Full=Bloom syndrome protein homolog; Short=Dmblm; AltName:
Full=Mutagen-sensitive protein 309; AltName: Full=RecQ
helicase homolog
gi|7299503|gb|AAF54691.1| bloom syndrome helicase ortholog [Drosophila melanogaster]
Length = 1487
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 240/401 (59%), Gaps = 11/401 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 725 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 784
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 785 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 845 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 904
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-CAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 905 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPQHFSGII 963
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L ++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDK----- 1078
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K + + ++V YCE + CRR + L+ FGE
Sbjct: 1079 --ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEH 1117
>gi|428210292|ref|YP_007094645.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
gi|428012213|gb|AFY90776.1| ATP-dependent DNA helicase RecQ [Chroococcidiopsis thermalis PCC
7203]
Length = 708
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 250/404 (61%), Gaps = 16/404 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
++L L+ +FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL +PG+ +V
Sbjct: 5 QSLEAALKHYFGYDSFRPGQKQIVEQALQNRDQLIVMPTGGGKSLCFQLPALLQPGLTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VSPLIALM++QV L++ GI FL+S+ + QV+++ + + SGK +LLYV PE
Sbjct: 65 VSPLIALMQDQVEALRDNGIGATFLNSSLNLHQVRSR-EQAILSGKT--KLLYVAPERLL 121
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ L I + + AIDEAHC+S WGHDFRP YR+L LR P VP LALTAT
Sbjct: 122 NEKFLPFLDLIREKIGIAAFAIDEAHCVSEWGHDFRPEYRQLKQLRQRYPGVPTLALTAT 181
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A +V++D+++ L L P + +SFNRPNL+YEV+ K +Y+ L +++ + + I
Sbjct: 182 ATDRVRQDIIQQLGLSQPSIHIASFNRPNLYYEVQPKQ--KQSYSQLLQIIRQS-EGSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R DE++ L I+ YHAGL+D R+ +I +V+VAT+AFGMGI
Sbjct: 239 VYCLSRRKVDEIAFKLQQDKIAALPYHAGLSDTERAENQTRFIRDDVRVMVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H ++P+++E +YQESGRAGRD ++ L+ G D + +E+++ +
Sbjct: 299 NKPDVRFVIHHDLPRNIEGYYQESGRAGRDGETARCTLFLGYGDIKTIEYLIDQKTDLQG 358
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
Q + ++ Q++D+ EG+ CRR +L FGE+ G
Sbjct: 359 QRIARQQ---------LRQVIDFAEGTDCRRTIVLGYFGERFAG 393
>gi|354489423|ref|XP_003506862.1| PREDICTED: ATP-dependent DNA helicase Q5-like [Cricetulus griseus]
Length = 411
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 247/404 (61%), Gaps = 13/404 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S ++Q + ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLALKVQVSSLNSKLSVQERKQLLSDLERDKPRTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLMSRNLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLAHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA P+VQ+DV SL L+ P+ K+ R NLFY+V++K+L+ D Y +L LK
Sbjct: 189 VALTATATPQVQEDVFASLHLKQPVASFKTPCFRANLFYDVQFKELIPDLYGNLRDFCLK 248
Query: 255 ANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
A G C IVYC R C++++ LS+ G++ AYHAGL R+ V ++W+
Sbjct: 249 ALGQKADKGLLSGCGIVYCRTREACEQVAVELSSRGVNAKAYHAGLKAPDRTQVQNEWME 308
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY D
Sbjct: 309 EKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRSD 368
Query: 367 RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG 410
R ++ F++ K K + ++ S K ++ F +V +CE G
Sbjct: 369 RDQVSFLIRKEIDKLQEKRGSKP-SDKATLLAFDALVTFCEELG 411
>gi|297570067|ref|YP_003691411.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
gi|296925982|gb|ADH86792.1| ATP-dependent DNA helicase RecQ [Desulfurivibrio alkaliphilus AHT2]
Length = 609
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 166/389 (42%), Positives = 240/389 (61%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG A FR +Q + I+ +L+GRD F LMPTGGGKS+CYQ+PAL +PG+ +VVSPLI+LM++
Sbjct: 13 FGFASFRPQQREIIEDLLAGRDAFVLMPTGGGKSLCYQLPALHRPGVAIVVSPLISLMKD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK +GI +S Q ++ L G+ L LLYV PE + F+ +L+++
Sbjct: 73 QVDALKAQGIKAACYNSALEAQEARQVLARLHGGE--LDLLYVAPERLMSEDFLGRLREL 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP Y +L LR P +P++ALTATA P +KD++
Sbjct: 131 Q----IALFAIDEAHCVSQWGHDFRPEYIQLGRLRQKFPGIPLIALTATAEPHTRKDIIA 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L+ +SF+RPN+ Y V K + L L + I+YCL R ++
Sbjct: 187 RLNLEKARCYLTSFDRPNIRYTVLEKK---RPFNQLLDFLDGRREEAGIIYCLSRKRVEQ 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
L+A L G + A+YHAGL+ + RS V + ++ ++VATVAFGMGID+ ++R V H
Sbjct: 244 LTAKLQEAGFAAASYHAGLSGEERSRVQEAFLRDDLPLIVATVAFGMGIDKSNIRYVVHH 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++PK++E +YQE+GRAGRD L S++LL +GM D L++ NSQ+ R +
Sbjct: 304 DVPKNIEGYYQETGRAGRDGLNSEALLLFGMGD-----VALARGLIDNSQNEERRRIENH 358
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + MV + + +GCRR+ +L FGE
Sbjct: 359 K----LAAMVGFAQATGCRRRVLLGYFGE 383
>gi|390953896|ref|YP_006417654.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
gi|390419882|gb|AFL80639.1| ATP-dependent DNA helicase RecQ [Aequorivita sublithincola DSM
14238]
Length = 692
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 245/404 (60%), Gaps = 33/404 (8%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ LL+ HFG+ +F Q + I +L +D +MPTGGGKS+C+Q+PALA G +V+S
Sbjct: 9 IADLLKTHFGYDKFLPNQEEIINNILDQKDTIAIMPTGGGKSLCFQLPALALDGTAIVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV LK GI+ F +S+Q + + ++ ++L +G +L+LLYV PE
Sbjct: 69 PLIALMKDQVDALKANGISATFFNSSQPYEEQQQVLKELQNG--NLKLLYVAPESLPQLN 126
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+ KI NL AIDEAHCISSWGHDFRP+Y +L SL+ P VP++ALTATA
Sbjct: 127 FILNSIKI------NLFAIDEAHCISSWGHDFRPAYTQLKSLKEQFPTVPLIALTATADR 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR-----YKDLLDDAYADLCSVLKANGDTC 260
++D+ L + N +SF+RPNL+ +VR K +LD LK + D C
Sbjct: 181 ATREDIAAQLSIPNAKTFIASFDRPNLYLDVRPGQNRNKQILD--------FLKIHRDEC 232
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R + ++L+A LS+ G AYHAGL + R+ + +++I+ ++VAT+AFGM
Sbjct: 233 GIIYCLSRKSTEKLAATLSSKGYKAEAYHAGLTSEERTQIQENFINDVSPIIVATIAFGM 292
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H+N+PK+++ +YQE GR+GRD LP+ ++L+Y D +
Sbjct: 293 GIDKSNVRWVIHYNMPKNIDGYYQEIGRSGRDGLPAHTILFYSFADVIML---------- 342
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ F+ + ++ +M + E CRRK +L FGE +
Sbjct: 343 --RKFAEGTETEAYQLAKLERMQQFAEALSCRRKALLGYFGEHI 384
>gi|265751367|ref|ZP_06087430.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|345514773|ref|ZP_08794279.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|423228784|ref|ZP_17215190.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|423247595|ref|ZP_17228644.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|229437610|gb|EEO47687.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|263238263|gb|EEZ23713.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|392631925|gb|EIY25892.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|392635523|gb|EIY29422.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
Length = 605
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/398 (42%), Positives = 241/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG+ FR Q D IQ +L+ +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MFQTLKNYFGYDSFRPLQQDIIQNILAQKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + + GK ++LLY++PE L
Sbjct: 61 PLISLMKDQVESLQANGIAARALNSSNNETENINLRRECLQGK--IKLLYISPERLLIET 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LRN P VPI+ALTATA
Sbjct: 119 NFL--LKDIQ----ISLFAIDEAHCISQWGHDFRPEYTQLKVLRNQFPKVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+KD+ + L L++P + SSF+RPNL EV+ D + ++ + + C I+Y
Sbjct: 173 KITRKDIAQQLALKDPKIFISSFDRPNLSLEVKRGYQQKDKARTILEFIEKHKNECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++A L GI YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTESVAAMLMKQGIRATVYHAGLSSDMRDKAQNDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD + S +LL+Y + D +LSK
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMESDTLLFYSLGDL----VMLSK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T + ++ +M Y E CRR+ +L FGE
Sbjct: 341 FATESSQQEINLEKLHRMQQYAESDICRRRILLNYFGE 378
>gi|145220257|ref|YP_001130966.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
gi|145206421|gb|ABP37464.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeovibrioides DSM
265]
Length = 622
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 246/405 (60%), Gaps = 19/405 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+ E EA+ L+ FG FR Q + ++A+L GRD F +MPTGGGKS+CYQ+PA+ P
Sbjct: 11 PVSE-EAMHDALQKVFGFKGFRPNQREVVRALLDGRDVFAVMPTGGGKSLCYQLPAVLLP 69
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G +V+SPLIALM++QV G + GI +L+S+ ++ + K+ ++L+SG SL LLYV P
Sbjct: 70 GTCMVISPLIALMKDQVDGARANGIRAAYLNSSLSLADRRKVLDELESG--SLDLLYVAP 127
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E A F + K+ +++ IDEAHCIS WGHDFRP Y +LSSL DVP+
Sbjct: 128 ERFALDSFRKLIGKVP----VSMAVIDEAHCISEWGHDFRPDYLQLSSLVTMFRDVPVAG 183
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA +VQ D + L L+ P +++SF+RPNL Y V +KD +D A + S+L+A+
Sbjct: 184 FTATATQRVQLDTLRRLALREPFTVRASFDRPNLTYSVLFKDGVD---AQIVSLLRAHSG 240
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+Y R + ++ +A L A G AYHAGL D+ R + +I V+VAT+AF
Sbjct: 241 KAGIIYRTSRKSVNDTAAMLQAKGFRALAYHAGLGDEERERNQNAFIRDEVDVIVATIAF 300
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ ++R V H ++PKS+E +YQE+GRAGRD P+ L + D+ ++ F + +
Sbjct: 301 GMGIDKSNIRFVIHADMPKSIENYYQETGRAGRDGEPAHCTLLFSQGDQAKLRFFIDTME 360
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ ++ +++ ++ + CRRK +L FGEQ
Sbjct: 361 DEGEKA---------RALEALRKVASFASSGVCRRKALLNYFGEQ 396
>gi|224535963|ref|ZP_03676502.1| hypothetical protein BACCELL_00827 [Bacteroides cellulosilyticus
DSM 14838]
gi|423226021|ref|ZP_17212487.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
gi|224522418|gb|EEF91523.1| hypothetical protein BACCELL_00827 [Bacteroides cellulosilyticus
DSM 14838]
gi|392630878|gb|EIY24859.1| ATP-dependent DNA helicase RecQ [Bacteroides cellulosilyticus
CL02T12C19]
Length = 727
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 244/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLMMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K ++ D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMIDAEVFKSSFNRPNLYYEVRPK--TNNIDRDIIKFIKNNSEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ +
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEEYM 392
>gi|325954269|ref|YP_004237929.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
gi|323436887|gb|ADX67351.1| ATP-dependent DNA helicase RecQ [Weeksella virosa DSM 16922]
Length = 731
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/407 (42%), Positives = 246/407 (60%), Gaps = 26/407 (6%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H K+ L L+ +FG+ QF+ +Q + I+ +L+ +D F LMPTGGGKSMCYQ+PAL G+
Sbjct: 5 HTKD-LSSYLKKYFGYDQFKGQQEEIIKTLLNNQDVFVLMPTGGGKSMCYQLPALMSEGV 63
Query: 81 VLVVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
++VSPLIALM+NQV L+ GI+ L+S+ + +D+ +GK ++LYV
Sbjct: 64 AIIVSPLIALMKNQVDALR--GISTNEVAHVLNSSLNKSETKIVMDDIRAGKT--KMLYV 119
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE ++ K + ++ AIDEAHCIS WGHDFRP YR L S+ + + PI
Sbjct: 120 APESLTKEEYIDFFKTVK----ISFFAIDEAHCISEWGHDFRPEYRNLKSIIQKIGNAPI 175
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D+ ++L +Q+ V K SFNRPNLFYEVR K D ++ +K
Sbjct: 176 IALTATATPKVQEDIQKTLGMQDARVFKDSFNRPNLFYEVRPKINQD---KEIVKFIKKR 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+VYCL R +EL+ L GI YHAGL+ K RS D ++ VVVAT+
Sbjct: 233 QGKSGVVYCLSRKKVEELTQLLQVNGIKAIPYHAGLDAKTRSKHQDMFLMEDVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H++IPKS+E++YQE+GRAGRD + + +Y D ++E L+
Sbjct: 293 AFGMGIDKPDVRFVIHYDIPKSLESYYQETGRAGRDGGEGECVAFYDYKDIEKLEKFLA- 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
S+ + RE + +++ Y E S RRK +L FGE+
Sbjct: 352 -----SKPVAEREI----GMQLLNEVAAYAETSMSRRKFLLHYFGEE 389
>gi|443726019|gb|ELU13361.1| hypothetical protein CAPTEDRAFT_91032 [Capitella teleta]
Length = 579
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 239/403 (59%), Gaps = 25/403 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + R FG +FR QL A+ A L G DCF LMPTGGGKS+CYQ+PAL PG+ LV+S
Sbjct: 1 MFDIFRTIFGLNEFRHNQLQAVNAALLGHDCFILMPTGGGKSLCYQLPALVTPGVTLVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+++QV L + LSS + + + L P ++LLY+TPE + A+
Sbjct: 61 PLRSLIQDQVQRLCSLDVPATHLSSDVSPAQANQTFMLLHQKIPPVKLLYLTPEKIVASA 120
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
S L+ ++ R +L IDEAHC+S WGHDFRP Y+KL+ LR P VP++A+TATA
Sbjct: 121 KLNSVLENLYRRKMLARFIIDEAHCVSQWGHDFRPDYKKLNGLRERFPGVPMIAVTATAT 180
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCA 261
P+V+KD++ L + +P SFNR NL YEV + K L D + S +
Sbjct: 181 PRVRKDILHQLGMNSPKWFMQSFNRVNLKYEVLPKKPKSLTSDVINMIHSRF---SNQSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGM 320
IVYCL R CD +S L+ GI AYHAGL D RSSV W++ +VV AT+AFGM
Sbjct: 238 IVYCLSRRECDTVSTDLTKAGIQAKAYHAGLTDAQRSSVQQKWLNEDGCKVVCATIAFGM 297
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQESGRAGRD + + +L+Y D R+ ++
Sbjct: 298 GIDKPDVRFVVHYSLPKSIEGYYQESGRAGRDGILATCVLFYSYSDVSRLRRMI------ 351
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
S+ + + +M++YCE + CRR + + FGE
Sbjct: 352 ----------ESEVHLDNLFRMINYCENKADCRRSQQMSYFGE 384
>gi|340618927|ref|YP_004737380.1| ATP-dependent DNA helicase RecQ [Zobellia galactanivorans]
gi|339733724|emb|CAZ97101.1| ATP-dependent DNA helicase RecQ [Zobellia galactanivorans]
Length = 736
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 177/418 (42%), Positives = 249/418 (59%), Gaps = 34/418 (8%)
Query: 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
K+K + ++ L L+ HFG ++F+ Q I +L + F +MPTGGGKS+CYQ+PAL
Sbjct: 3 KDKKVLKETDLHASLKKHFGFSEFKGLQQAVITNILERNNTFAIMPTGGGKSLCYQLPAL 62
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEF---------LSSTQTMQVKTKIYEDLDS 126
+ G +VVSPLIALM+NQV ++ G++ +F L+ T+ QVK ED+ +
Sbjct: 63 MQDGTAIVVSPLIALMKNQVDAIR--GVSDQFGIAHVLNSSLTKTEVRQVK----EDITN 116
Query: 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186
G +LLYV PE ++ L+ + L+ +A+DEAHCIS WGHDFRP YR L +
Sbjct: 117 G--ITKLLYVAPESLTKEDYIDFLQSVK----LSFIAVDEAHCISEWGHDFRPEYRNLRT 170
Query: 187 LRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDA 245
+ N L D +PI+ALTATA PKVQ+D++++L + + K+SFNRPNLFYEVR K D+
Sbjct: 171 IVNRLDDDIPIIALTATATPKVQEDIIKNLGITDAQTYKASFNRPNLFYEVRPKTANVDS 230
Query: 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
D+ +K N I+YCL R +EL+ L G+S YHAG + K RS D ++
Sbjct: 231 --DIIRFVKKNAGKSGIIYCLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFL 288
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
VVVAT+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y
Sbjct: 289 MEDVDVVVATIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDDGEGHCLAFYSYK 348
Query: 366 DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
D ++E +S N+ Q + ++V Y E S RRK +L FGE+
Sbjct: 349 DIEKLEKFMS-NKPVAEQEIGN---------ALLQEVVAYAETSMSRRKFMLHYFGEE 396
>gi|404406052|ref|ZP_10997636.1| ATP-dependent DNA helicase RecQ [Alistipes sp. JC136]
Length = 730
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 178/407 (43%), Positives = 245/407 (60%), Gaps = 30/407 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K L+ +FG + F+ Q I+ VL G D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHDK------LKEYFGFSSFKGNQEAVIRNVLEGNDTFVLMPTGGGKSLCYQLPALLMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +V+SPLIALM+NQV ++ E GIA FL+S+ ++ D+ +GK +LLY
Sbjct: 63 VAIVISPLIALMKNQVDAMRTFSAESGIA-HFLNSSLNKTAVAQVRADVLAGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE ++ L KI ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVAFLHKIK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGAAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K +D D+ +K
Sbjct: 176 LIALTATATPKVQLDIQKNLGMSDASVFKSSFNRANLYYEIRPKRNVD---RDIIRFIKQ 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI AYHAG++ R++ DD++ R +V+VAT
Sbjct: 233 NEGKSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDAVTRAANQDDFLMERVEVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGYCLTFYSYKDIQKLE---- 348
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K Q E+ K + + V Y E S CRRK +L FGE
Sbjct: 349 ----KFMQGKPIAEQEIGKLL--LLETVSYAESSMCRRKTLLHYFGE 389
>gi|326471382|gb|EGD95391.1| ATP-dependent DNA helicase [Trichophyton tonsurans CBS 112818]
Length = 1556
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 248/404 (61%), Gaps = 17/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+S
Sbjct: 697 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 756
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 757 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 816
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R P VP++ALTAT
Sbjct: 817 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYPGVPVMALTAT 876
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 877 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 936
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 937 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 996
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+
Sbjct: 997 GIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNKET 1056
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ R+R + ++ F CE + CRR +IL F E+
Sbjct: 1057 TYEQ-KQRQRQMLRHVTQF------CENITDCRRAQILAYFDEK 1093
>gi|77552739|gb|ABA95536.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 707
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 241/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++
Sbjct: 85 FGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D A+ S N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ LS GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E +++ D +V YC+ CRR FGE C
Sbjct: 432 ENCGLQNLYD---IVRYCQSKRSCRRGAFFRHFGEAAQDC 468
>gi|406659948|ref|ZP_11068084.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
gi|405556351|gb|EKB51290.1| ATP-dependent DNA helicase recQ [Cecembia lonarensis LW9]
Length = 726
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 246/404 (60%), Gaps = 28/404 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG +QFR Q + +L G++ F +MPTG GKS+CYQ+PA+ + G +
Sbjct: 6 KEKLKKI----FGFSQFRGNQEPIVDNILKGKNTFVIMPTGAGKSLCYQLPAVIQDGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LT 141
V+SPLIALM+NQV L GI FL+ST K+ +++ SGK +LLYV PE LT
Sbjct: 62 VISPLIALMKNQVDQLNAFGINAHFLNSTLNKSETNKVKKEVLSGKT--KLLYVAPESLT 119
Query: 142 ATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILA 198
F+ K L+ VAIDEAHCIS WGHDFRP YRK+ S+ + + +PI+A
Sbjct: 120 KEENILFLKDAK-------LSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQVGESLPIIA 172
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+ +L ++ + KSSFNR NL+YEVR K + ++ + +K++
Sbjct: 173 LTATATPKVQQDIQRNLHMEEADLYKSSFNRTNLYYEVRPK-IKNETKKQIIKYIKSHKG 231
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L GI A YHAGL+ R DD+++ V+VAT+AF
Sbjct: 232 KSGIIYCLSRKKVEEIADLLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAF 291
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 292 GMGIDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLE------- 344
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ++ ER + K + +M Y E S CRRK +L FGE
Sbjct: 345 -KFNKDKPVTERENAKVL--LQEMAAYAESSICRRKFLLHYFGE 385
>gi|296813367|ref|XP_002847021.1| RecQ family helicase MusN [Arthroderma otae CBS 113480]
gi|238842277|gb|EEQ31939.1| RecQ family helicase MusN [Arthroderma otae CBS 113480]
Length = 1550
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/404 (43%), Positives = 247/404 (61%), Gaps = 17/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
+R F FR QL++I + LSGRD F LMPTGGGKS+CYQ+P++ K G+ +V+S
Sbjct: 693 MREIFHLRGFRPNQLESINSTLSGRDTFVLMPTGGGKSLCYQLPSIIKTGQTKGVTIVIS 752
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS--GKPSLRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + +T I +L S ++LLYVTPE+ A
Sbjct: 753 PLLSLMQDQVAHLQKLHVKAFLINGDVSKDERTSIMSNLRSLRADSHIQLLYVTPEMLAK 812
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L +R VP++ALTAT
Sbjct: 813 SRAMESALLQLHSNKKLARIVIDEAHCVSQWGHDFRPDYTALGKMRERYTGVPVMALTAT 872
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + C
Sbjct: 873 ATPNVQVDVIHNLHMKGCDVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITTDYSGKCG 932
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S R V+VAT+AFGM
Sbjct: 933 IIYCLSRKTCERVAMQLSSKFGVKTAHYHAGLSSKERFAVQRDWQSGRHTVIVATIAFGM 992
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ +VR V H +IP+S+E +YQE+GRAGRD S+ LYY D + ++++KN+
Sbjct: 993 GIDKANVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYHDSVSINYMINKNKD- 1051
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+Q R+R + ++ F CE + CRR +IL F E+
Sbjct: 1052 TTQEQKHRQRQMLRHVTQF------CENITDCRRVQILAYFDEK 1089
>gi|428773638|ref|YP_007165426.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
gi|428687917|gb|AFZ47777.1| ATP-dependent DNA helicase RecQ [Cyanobacterium stanieri PCC 7202]
Length = 713
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/398 (40%), Positives = 254/398 (63%), Gaps = 16/398 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q +Q ++ +D +MPTGGGKS+C+Q+PAL K G+ +V+SPLI+
Sbjct: 8 LKKYFGYDSFRPGQEKIVQDAIAHKDLLVIMPTGGGKSLCFQLPALLKQGVTIVISPLIS 67
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE-DLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV L++ GI +L+ST + +TKI + D+ +GK ++LLY+ PE + F
Sbjct: 68 LMQDQVTALQDNGIGATYLNSTLNYE-QTKIRQRDILAGK--IKLLYLAPERLVSDTFQP 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + + + AIDEAHCIS WGHDFR YR++ LR P VPI ALTATA +VQ
Sbjct: 125 FLVTLAQKIGIAAFAIDEAHCISEWGHDFRQEYRQMRYLRQQFPQVPITALTATATVRVQ 184
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++E L L+NP + + SFNR NL+YEV+ K+ AY L +++++ + IVYC+ R
Sbjct: 185 RDIIEQLNLRNPQIHRFSFNRQNLYYEVQEKE--RRAYNQLLHIIRSHQGS-GIVYCISR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ +E++ L G+S YHAGL+DK RS +I +++VATVAFGMGI++ DVR
Sbjct: 242 KSTEEIAERLVKDGVSALPYHAGLSDKVRSHYQTSFIRDDVRIMVATVAFGMGINKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
LV H+++P+++E++YQESGRAGRD + +L Y D++++ + + + T
Sbjct: 302 LVVHYDLPRNIESYYQESGRAGRDGEKANCILLYSRGDKQKIHYFIRQ---------KTN 352
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ K + + +++++Y + + CRR L FGE+ G
Sbjct: 353 PQEQKIAYAQLAKVIEYADTNYCRRIPQLSYFGEKFKG 390
>gi|344231853|gb|EGV63732.1| ATP-dependent DNA helicase [Candida tenuis ATCC 10573]
Length = 1031
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 250/410 (60%), Gaps = 29/410 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGI 80
+ +L F FR Q +AI ++L GRD F LMPTGGGKS+CYQ+P+L K G+
Sbjct: 343 IYSVLNKKFKLQNFRSNQFEAIISLLQGRDVFVLMPTGGGKSLCYQLPSLIKIGARNQGV 402
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLI+LM++QV LK K I ++S K +I + + + L L+Y++PE+
Sbjct: 403 TIVISPLISLMQDQVQHLKNKNIKAGMINSKIEYSEKKQIIDLFKTAQ--LDLVYLSPEM 460
Query: 141 TATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ + ++ K+++ LN V +DEAHCISSWGHDFRP Y+ +S R PD+PI+AL
Sbjct: 461 VNSSAQIQRIIKQLYDTKQLNKVIVDEAHCISSWGHDFRPDYKAMSIFRQNYPDIPIMAL 520
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK------DLLDDAYADLCSVL 253
TATA KV+ D++ L +++P V K SFNR NL+YE+R K D+ D ++L
Sbjct: 521 TATANDKVRLDILHLLNMKSPKVFKQSFNRINLYYEIRMKKAGFVEDIRD-------TIL 573
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ I+YC + +C+++S L+ GI A YHAG++ + R V D W R +V+
Sbjct: 574 AKYKNQTGIIYCHSKQSCEQISMKLNQFGIESAFYHAGMSTEDRFEVQDSWQQERLRVIC 633
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ +VR V H +P+++E +YQE+GRAGRD L S ++YY D R ++ +
Sbjct: 634 ATIAFGMGIDKPNVRFVIHSFLPRNLEGYYQETGRAGRDGLHSDCIMYYSYKDARNLQLM 693
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ K++ N + + +S Q++ YCE + CRR+++L+ F E
Sbjct: 694 IQKDEEYN-------QATKDNHLSKLRQVIQYCENNHDCRRRQVLQYFNE 736
>gi|319900082|ref|YP_004159810.1| ATP-dependent DNA helicase RecQ [Bacteroides helcogenes P 36-108]
gi|319415113|gb|ADV42224.1| ATP-dependent DNA helicase RecQ [Bacteroides helcogenes P 36-108]
Length = 727
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 242/405 (59%), Gaps = 23/405 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +
Sbjct: 5 KTNLTDQLKEYFGFDTFKGNQEAIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTGI 64
Query: 83 VVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
V+SPLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV P
Sbjct: 65 VISPLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDIVSGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 122 ESLTKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 178 LTATATPKVQHDIQKNLGMVDARVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNSE 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AF
Sbjct: 236 KSGIIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE------- 348
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 349 -KFMQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 390
>gi|302653064|ref|XP_003018365.1| RecQ family helicase MusN [Trichophyton verrucosum HKI 0517]
gi|291182004|gb|EFE37720.1| RecQ family helicase MusN [Trichophyton verrucosum HKI 0517]
Length = 1341
Score = 325 bits (834), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 248/404 (61%), Gaps = 17/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 697 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 756
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 757 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 816
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R VP++ALTAT
Sbjct: 817 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYSGVPVMALTAT 876
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 877 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 936
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 937 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 996
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+ +
Sbjct: 997 GIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNK-E 1055
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ R+R + ++ F CE + CRR +IL F E+
Sbjct: 1056 TTHEQKQRQRQMLRHVTQF------CENITDCRRAQILAYFDEK 1093
>gi|386743723|ref|YP_006216902.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
gi|384480416|gb|AFH94211.1| ATP-dependent DNA helicase RecQ [Providencia stuartii MRSN 2154]
Length = 608
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/391 (43%), Positives = 242/391 (61%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I+A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ GI L+S+QT Q + + G +++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGIKAACLNSSQTAQEQRDVMALCAEG--AIKLLYVAPERLLTDYFLSQLSSW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ ++L+A+DEAHC+S WGHDFRP YR + LR + PDVPI+ALTATA + D++
Sbjct: 139 N----ISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFPDVPIMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLALHDPLIQISSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL+++ R V D ++ Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLRRCLEEKPAGLQQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|183600296|ref|ZP_02961789.1| hypothetical protein PROSTU_03856 [Providencia stuartii ATCC 25827]
gi|188020087|gb|EDU58127.1| ATP-dependent DNA helicase RecQ [Providencia stuartii ATCC 25827]
Length = 608
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 172/391 (43%), Positives = 242/391 (61%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I+A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ GI L+S+QT Q + + G +++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGIKAACLNSSQTAQEQRDVMALCAQG--AIKLLYVAPERLLTDYFLSQLSSW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ ++L+A+DEAHC+S WGHDFRP YR + LR + PDVPI+ALTATA + D++
Sbjct: 139 N----ISLLAVDEAHCVSQWGHDFRPEYRAIGQLRQHFPDVPIMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLALHDPLIQISSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL+++ R V D ++ Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLDNQQREWVQDAFLKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAVLFYDPADMAWLRRCLEEKPAGLQQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|443309958|ref|ZP_21039633.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
gi|442780011|gb|ELR90229.1| ATP-dependent DNA helicase RecQ [Synechocystis sp. PCC 7509]
Length = 724
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 164/400 (41%), Positives = 251/400 (62%), Gaps = 16/400 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L L+ +FG+ FR Q I+ L+ +D +MPTGGGKS+C+Q+PAL + G+ +V
Sbjct: 5 QPLESTLKKYFGYTSFRLGQQQIIEQALNNQDLLVVMPTGGGKSLCFQLPALLRKGLTVV 64
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VSPLIALM++QV L+ GI FL+ST T QV+++ E + SGK ++LLYV PE
Sbjct: 65 VSPLIALMQDQVQSLRNNGIGATFLNSTLTTYQVRSR-EEAILSGK--VKLLYVAPERLL 121
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ F+ + + + + AIDEAHC+S WGHDFRP YR+L +LR P+VP +ALTAT
Sbjct: 122 SDRFLPFIDLVQHQIGIASFAIDEAHCVSEWGHDFRPDYRQLRALRQRYPNVPTIALTAT 181
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A +V+ D+++ L L P++ +SFNRPNL+Y+V+ K AY L ++ + + I
Sbjct: 182 ATDRVRSDIIQQLNLTKPIIHVASFNRPNLYYDVQPKQ--KQAYNQLKQLVTKH-EGAGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R D+++ L GIS YHAGL+D R S +I +++VATVAFGMGI
Sbjct: 239 IYCLSRRKVDDITMKLQQDGISALPYHAGLSDAERESNQTRFIRDDARLMVATVAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H+++P+++E++YQESGRAGRD ++ +++G D + +E+++ +
Sbjct: 299 NKPDVRFVIHYDLPRNIESYYQESGRAGRDGGAARCTIFFGYGDVKTVEYLIDQKTDVQE 358
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q + ++ Q++DY +G+ CRR L FGE
Sbjct: 359 QRIAKQQ---------LRQIIDYAQGTVCRRTIQLGYFGE 389
>gi|260949491|ref|XP_002619042.1| hypothetical protein CLUG_00201 [Clavispora lusitaniae ATCC 42720]
gi|238846614|gb|EEQ36078.1| hypothetical protein CLUG_00201 [Clavispora lusitaniae ATCC 42720]
Length = 1408
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/442 (39%), Positives = 261/442 (59%), Gaps = 28/442 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
F FR QL+A+ A L+G+D F L+PTGGGKS+CYQ+PAL K G + +V+SPLI+
Sbjct: 668 FKLPDFRPNQLEAVVAALNGKDVFVLIPTGGGKSLCYQLPALVKGGKTRGVTIVISPLIS 727
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L+++ I +SS T + K +L SG+ L L+Y++PE+ + + +
Sbjct: 728 LMQDQVQHLRDRNINAAMISSRGTTEEKHAAIRELTSGQ--LDLVYLSPEMVNSSNMIQR 785
Query: 150 -LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L K++ +L V +DEAHC+SSWGHDFRP Y+ +S + P+VPI+ALTATA KV+
Sbjct: 786 VLSKLYESNMLARVVVDEAHCVSSWGHDFRPDYQGMSLFKEKFPEVPIMALTATANEKVR 845
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L ++N ++LK SFNR NLFYEVR K + + K G T I+YC +
Sbjct: 846 LDIVHHLRMKNLVLLKQSFNRTNLFYEVRNKPPNLYEWIRDYVMGKMAGKT-GIIYCHSK 904
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ + L+ GI C YHAG++ R V W ++ Q++ AT+AFGMGID+ DVR
Sbjct: 905 QSCETTAQKLNDWGIKCMYYHAGMDPNERFDVQTQWQHNKIQLICATIAFGMGIDKPDVR 964
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H IPKS+E +YQE+GRAGRD S+ +++Y D R ++ ++ +++ +
Sbjct: 965 FVIHMYIPKSLEGYYQETGRAGRDGKESECIMFYSYKDARALQSLIQRDR-------NLE 1017
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQV--LGC----------VASVTHRV 435
E + + +S Q+V YCE + CRRK++L F E C V SVT V
Sbjct: 1018 ESARESHLSKLRQVVQYCENKTDCRRKQVLHFFNESFDPANCARKCDNCCSDVVSVTRDV 1077
Query: 436 VSFISPFILLISSSKTDTCIIM 457
S + ++ S + D ++
Sbjct: 1078 TEHCSNIVKMVQSLQADKVTVI 1099
>gi|423316589|ref|ZP_17294494.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
gi|405583639|gb|EKB57579.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum ATCC 43767]
Length = 733
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 244/405 (60%), Gaps = 30/405 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q + I ++L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LSQELKKYFGFSTFKGRQEEVISSLLEGKDVFVLMPTGGGKSLCYQLPALLLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV + E G+A L+ TQT QV ++D++ GK +LLYV P
Sbjct: 68 PLIALMKNQVDAVNGLSNEDGVAHVLNSSLNRTQTQQV----FDDIEKGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ VAIDEAHCIS WGHDFRP YR L ++ + DVPI+A
Sbjct: 122 ESLIKDEYSDFLKSVK----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIEKIADVPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K +D ++ +
Sbjct: 178 LTATATPKVQDDIQKTLGMSDAKVYKSSFNRPNLYYEVRPKINVD---KEIVKFINQRKG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 295 GMGIDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ-- 352
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ S +E + +++ Y E S RR+ IL FGE+
Sbjct: 353 ----KPLSEKEI----GLQLLHEVIGYAETSMSRRQYILYYFGEE 389
>gi|5281068|gb|AAD41441.1|U92536_1 RECQ helicase homolog [Drosophila melanogaster]
Length = 1487
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 239/399 (59%), Gaps = 11/399 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 725 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 784
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I E LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 785 PLKSLIFDQINKLASLDICAESLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 845 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 904
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-CAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 905 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPQHFSGII 963
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L ++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDK----- 1078
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFG 421
+ + K + + ++V YCE + CRR + L+ FG
Sbjct: 1079 --ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFG 1115
>gi|77552741|gb|ABA95538.1| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
Length = 556
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 241/400 (60%), Gaps = 22/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++
Sbjct: 85 FGISSYRQNQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGIQAYMLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D A+ S N ++ IVYC R
Sbjct: 265 EMLHIPRCVKFVSTINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ LS GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELSERGILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
E +++ D +V YC+ CRR FGE C
Sbjct: 432 ENCGLQNLYD---IVRYCQSKRSCRRGAFFRHFGEAAQDC 468
>gi|325284946|ref|YP_004260736.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
gi|324320400|gb|ADY27865.1| ATP-dependent DNA helicase RecQ [Cellulophaga lytica DSM 7489]
Length = 733
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 175/401 (43%), Positives = 242/401 (60%), Gaps = 28/401 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG +F+ Q I +L G + F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 12 LKKHFGFTKFKGLQESVINNLLKGNNTFVIMPTGGGKSLCYQLPALMQEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS QVK ++ ED+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSEHGIAHVLNSSLTKTQVK-EVKEDIVNG--VTKLLYVAPESLIKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ L+ + ++ VA+DEAHCIS WGHDFRP YR L ++ L D +P++ LTATA
Sbjct: 129 YVEFLRSVK----ISFVAVDEAHCISEWGHDFRPEYRNLKTIVGKLGDNIPMIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + + K+SFNRPNLFYEVR K + AD+ +K N IVY
Sbjct: 185 PKVQEDIVKNLGIADAKLFKASFNRPNLFYEVRPK--TQNIEADIIRFVKQNVGKSGIVY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GIS YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKKVEELAQVLQVNGISAVPYHAGFDAKTRSRYQDMFLMEEVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 303 PDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYSYKDIEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I + ++V + E S RRK IL FGE+
Sbjct: 351 FMSGKPVAEQEIGNALLQEVVAFAETSMSRRKFILHYFGEE 391
>gi|406674061|ref|ZP_11081273.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
gi|405584835|gb|EKB58711.1| ATP-dependent DNA helicase RecQ [Bergeyella zoohelcum CCUG 30536]
Length = 733
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 244/405 (60%), Gaps = 30/405 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG + F+ +Q + I ++L G+D F LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LSQELKKYFGFSTFKGRQEEVISSLLEGKDVFVLMPTGGGKSLCYQLPALLLEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV + E G+A L+ TQT QV ++D++ GK +LLYV P
Sbjct: 68 PLIALMKNQVDAVNGLSNEDGVAHVLNSSLNRTQTQQV----FDDIEKGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ VAIDEAHCIS WGHDFRP YR L ++ + DVPI+A
Sbjct: 122 ESLIKDEYSDFLKSVK----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIEKIADVPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K +D ++ +
Sbjct: 178 LTATATPKVQDDIQKTLGMSDAEVYKSSFNRPNLYYEVRPKINVD---KEIVKFINQRKG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E + L GI+ YHAGL+ K R + D ++ V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEFAQLLQVNGINALPYHAGLDQKTRVANQDKFLMEECDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++ PKS+E++YQE+GRAGRD L +Y D ++E L++
Sbjct: 295 GMGIDKPDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQ-- 352
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ S +E + +++ Y E S RR+ IL FGE+
Sbjct: 353 ----KPLSEKEI----GLQLLHEVIGYAETSMSRRQYILYYFGEE 389
>gi|406603614|emb|CCH44869.1| bloom syndrome protein [Wickerhamomyces ciferrii]
Length = 1521
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 250/400 (62%), Gaps = 16/400 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV----LVVS 85
LR F + FR QL+A+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G+ +VVS
Sbjct: 696 LRQIFKLSSFRQNQLEAVNATLSGKDTFVLMPTGGGKSLCYQLPAVVKSGVTHGTTIVVS 755
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L EK I ++S + + + + G L L+Y++PE+ +A+
Sbjct: 756 PLISLMQDQVEHLWEKNIKAGMINSKGSPEERRTTFNLFVDG--FLDLVYLSPEMISASN 813
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ + +++ +G L V +DEAHC+SSWGHDFRP Y+ LS + P++P++ALTATA
Sbjct: 814 QAKNAIDRLYRQGKLARVVVDEAHCVSSWGHDFRPDYKHLSYFKTNYPEIPVMALTATAN 873
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
V+ D++ +L L++P+ LK SFNR NLFYEV KD + ++ S+L D I+Y
Sbjct: 874 DHVKMDIIHNLNLKDPVFLKQSFNRTNLFYEVLNKDKDHMKHIEM-SILGKFKDQTGIIY 932
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C + C++ S L GI CA YHAG+ + R + W + +V+ AT+AFGMGID+
Sbjct: 933 CHSKNACEQTSDKLINSGIKCAFYHAGMTPEDRLDIQKAWQNGTIKVICATIAFGMGIDK 992
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +P+++E +YQE+GRAGRD S ++YG D R ++ ++S+++ +
Sbjct: 993 ADVRFVIHLTLPRTLEGYYQETGRAGRDGNYSYCTMFYGFRDARTLQNMISRDKDLD--- 1049
Query: 385 FSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
+ +K ++ Q++ YCE S CRR+++L+ F EQ
Sbjct: 1050 ----KAGKEKHLTKLRQVIQYCENSTDCRRQQVLQYFNEQ 1085
>gi|302767148|ref|XP_002966994.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
gi|300164985|gb|EFJ31593.1| hypothetical protein SELMODRAFT_408296 [Selaginella moellendorffii]
Length = 901
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/402 (45%), Positives = 251/402 (62%), Gaps = 27/402 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L+ +FG++ FR Q + IQ +L GRDC +M TG GKS+CYQIP L +V+S
Sbjct: 1 MERCLKDYFGYSSFRPFQKEVIQQILRGRDCLVVMATGSGKSICYQIPPLVSSKTAVVIS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LM++QV+GLK +GI E+L S QT K ED +G+ +LY+TPE
Sbjct: 61 PLISLMQDQVMGLKLRGIKAEYLGSAQT----DKTVED-KAGRGEYDILYMTPEKACGTT 115
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ S L SRG+ +L+A+DEAHCIS WGHDFRP Y++LSS+R+ LP+VP +ALTATA
Sbjct: 116 WTSLL----SRGV-SLLAVDEAHCISEWGHDFRPEYQRLSSIRSKLPEVPFVALTATATH 170
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV----RYKDLLDDAYADLCSVLKANGDTCA 261
KV++D+++SL L+N + SSF+R N+FY V R ++ ++ L+ G T
Sbjct: 171 KVREDILKSLMLKNAYIAVSSFDRSNIFYGVKPLTRSNAFREELATEVVKDLEQGGST-- 228
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC DE++ L G + AYH+ L K R+ V ++ QVVVATVAFGMG
Sbjct: 229 IVYCNTIKDVDEVTNALVKAGAAARAYHSKLGLKERNDVHRTFLKDELQVVVATVAFGMG 288
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ D+R V H+ PKS+E++YQESGR GRD LPS LY+ D R E+ S+
Sbjct: 289 IDKPDIRRVIHYGCPKSLESYYQESGRCGRDGLPSACWLYFTRADFTRAEYYTSE----- 343
Query: 382 SQSFSTRERSSKKSISD-FSQMVDYCEGSGCRRKKILESFGE 422
T+ER KK+++D F+ YC + CRRK IL+ FGE
Sbjct: 344 ---VRTQER--KKAVADAFAASQGYCTTTTCRRKFILQYFGE 380
>gi|410029263|ref|ZP_11279099.1| ATP-dependent DNA helicase RecQ [Marinilabilia sp. AK2]
Length = 726
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 244/404 (60%), Gaps = 28/404 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KE L K+ FG +QFR Q + +L ++ F +MPTG GKS+CYQ+PA+ + G +
Sbjct: 6 KEKLKKI----FGFSQFRGNQEPIVDNILGQKNTFVIMPTGAGKSLCYQLPAVIQEGTAI 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LT 141
V+SPLIALM+NQV L GI FL+ST K+ +++ SGK +LLYV PE LT
Sbjct: 62 VISPLIALMKNQVDQLNAFGINAHFLNSTLNKSETNKVKKEVLSGKT--KLLYVAPESLT 119
Query: 142 ATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
F+ K L+ VAIDEAHCIS WGHDFRP YRK+ S+ L ++PI+A
Sbjct: 120 KEENILFLKDAK-------LSFVAIDEAHCISEWGHDFRPEYRKIKSIIAQLGKELPIIA 172
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+ +L ++ + KSSFNR NL+YE+R K L ++ + +K+
Sbjct: 173 LTATATPKVQQDIQRNLQMEEADLFKSSFNRTNLYYEIRPK-LKNETKKQIIKYIKSQKG 231
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L GI A YHAGL+ R DD+++ V+VAT+AF
Sbjct: 232 KSGIIYCLSRKKVEEIAELLKVNGIKAAPYHAGLDQSVRIKNQDDFLNEEVDVIVATIAF 291
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD L L++Y +D ++E
Sbjct: 292 GMGIDKPDVRYVIHYDVPKSLEGYYQETGRAGRDGLEGHCLMFYRYEDIIKLE------- 344
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ++ ER + K + +M Y E S CRRK +L FGE
Sbjct: 345 -KFNKDKPVTERENAKIL--LQEMAAYAESSICRRKFLLHYFGE 385
>gi|198276249|ref|ZP_03208780.1| hypothetical protein BACPLE_02441 [Bacteroides plebeius DSM 17135]
gi|198270691|gb|EDY94961.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 611
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 163/400 (40%), Positives = 243/400 (60%), Gaps = 19/400 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+E ++K L+ +FG+ FR Q I +L +D LMPTGGGKSMCYQ+PAL G +
Sbjct: 2 REQMLKTLKSYFGYTSFRPLQEKIISTILQKKDALVLMPTGGGKSMCYQLPALLMEGTTV 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM++QV L+ GI L+ST ++Y + G+ ++LLY++PE
Sbjct: 62 VVSPLISLMKDQVESLQANGIVARALNSTNDDATNAQLYFECLQGR--VKLLYISPER-- 117
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
MS++ + ++L AIDEAHCIS WGHDFRP Y +L ++R Y P+VP++ALTAT
Sbjct: 118 ---LMSEMNYLLRDINISLFAIDEAHCISHWGHDFRPEYTQLKAIRQYFPNVPVVALTAT 174
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A ++D++ L ++NP + SSF+RPNL EV+ + + L+ + + I
Sbjct: 175 ADKITREDIIRQLEMRNPEIFISSFDRPNLSLEVKRGYQQKEKIKAIVKFLRRHRNESGI 234
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC+ R ++++ L G AAYHAG++++ R DD+I+ R Q++ AT+AFGMGI
Sbjct: 235 IYCMSRNGTEKVAQLLEKEGFDVAAYHAGMSNEQREITQDDFINDRVQIICATIAFGMGI 294
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+N+PKS+E FYQE GRAGRD LPS++LL+Y D +LS+
Sbjct: 295 DKSNVRWVIHYNLPKSIENFYQEIGRAGRDGLPSETLLFYSFGDI----ILLSR------ 344
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+ ++ ++M Y E CRR+ +L FGE
Sbjct: 345 --FAAESNQQGINLEKLNRMQQYAESDICRRRILLNYFGE 382
>gi|332849065|ref|XP_003339348.1| PREDICTED: ATP-dependent DNA helicase Q5 [Pan troglodytes]
gi|332849067|ref|XP_003315779.1| PREDICTED: ATP-dependent DNA helicase Q5 [Pan troglodytes]
Length = 435
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 171/388 (44%), Positives = 242/388 (62%), Gaps = 12/388 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 24 FGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + + + ++ DL+ KP ++LY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLTLKVRVSSLNSKLSARERKELLADLEREKPQTKILYITPEMAASSSFQPTLN 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++FGMG+
Sbjct: 264 VYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAK-L 382
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSG 410
Q + S K +I F +V +CE G
Sbjct: 383 QVKRGNKASDKATIMAFDALVTFCEELG 410
>gi|322421607|ref|YP_004200830.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
gi|320127994|gb|ADW15554.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M18]
Length = 598
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 247/402 (61%), Gaps = 19/402 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+K+L FG+ FR +Q + ++ VL+G+D F LMPTGGGKS+CYQ+PAL PG LVVSP
Sbjct: 6 IKILNDIFGYKAFRPRQQEIVETVLAGKDAFVLMPTGGGKSLCYQVPALCLPGTALVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E G+A +S ++ +L +G+ L+LLYV PE + GF
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSALGEAEARRVLAELHAGE--LKLLYVAPERLLSDGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ ++K + ++L AIDEAHC+S WGHDFRP Y +L LR P +P++ALTATA +
Sbjct: 124 LERIKTLP----ISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPQIPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L L++ + F+RPN+ Y V K+ + L + L D IVY L
Sbjct: 180 TKGDILSRLGLEDAACFFAGFDRPNIRYGVMEKN---KPFNQLTAFLATRKDEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L GI AAYHAGL DK R V + ++ ++VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVARKLCGAGIKAAAYHAGLPDKERHQVQEAFLRDDVKIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+++PKS+E++YQE+GRAGRD LP+ +LL +G D +++ N +
Sbjct: 297 VRFVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGD-----IAVARGLIGNGGN-- 349
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV-LGC 427
E ++ + + MV + E CRR+ +L FG+++ GC
Sbjct: 350 --EEQNRIELHKLNCMVGFAEAQTCRRRVLLGYFGDRLEEGC 389
>gi|379729697|ref|YP_005321893.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
gi|378575308|gb|AFC24309.1| ATP-dependent DNA helicase RecQ [Saprospira grandis str. Lewin]
Length = 737
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 251/407 (61%), Gaps = 27/407 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG QF+ +Q + IQ++LSG+D F +MPTGGGKS+CYQ+PAL G +VV
Sbjct: 7 SLTTALKKYFGFEQFKGQQEEIIQSILSGQDTFVIMPTGGGKSLCYQLPALLSEGTAIVV 66
Query: 85 SPLIALMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
SPLIALM+NQV ++ E FL+S+ + ++ +D+ SG + +LLY+ PE L
Sbjct: 67 SPLIALMKNQVDAVRSYAESDQVAHFLNSSLSRAKVKEVKQDIVSG--ATKLLYIAPETL 124
Query: 141 TA--TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPIL 197
T T F+S++K ++ VA+DEAHCIS WGHDFRP YR++ S+ N ++PI+
Sbjct: 125 TKEDTLRFLSQIK-------VSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEIPII 177
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKV+ D++++L L+ P SFNR NLFYEV+ K +D + +K
Sbjct: 178 ALTATATPKVRMDIVKTLRLEEPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQFIKDKA 237
Query: 258 -DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y R T +E++ LS I A YHAGL K RS D ++ + V+VAT+
Sbjct: 238 PNESGIIYVQNRKTTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVATI 297
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + L +Y D R+E L
Sbjct: 298 AFGMGIDKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFL-- 355
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + RE ++ ++M+ Y E + CRR+ +L FGE+
Sbjct: 356 ----RDKPVAEREMGAQL----LAEMIAYAETTACRRRFLLHYFGEK 394
>gi|302509478|ref|XP_003016699.1| RecQ family helicase MusN [Arthroderma benhamiae CBS 112371]
gi|291180269|gb|EFE36054.1| RecQ family helicase MusN [Arthroderma benhamiae CBS 112371]
Length = 1441
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 248/404 (61%), Gaps = 17/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 668 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 727
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 728 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 787
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R VP++ALTAT
Sbjct: 788 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYSGVPVMALTAT 847
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + D C
Sbjct: 848 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPDKCG 907
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 908 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 967
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+ +
Sbjct: 968 GIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNK-E 1026
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ R+R + ++ F CE + CRR +IL F E+
Sbjct: 1027 TTHEQKQRQRQMLRHVTQF------CENITDCRRAQILAYFDEK 1064
>gi|372223763|ref|ZP_09502184.1| RecQ familyATP-dependent DNA helicase [Mesoflavibacter
zeaxanthinifaciens S86]
Length = 733
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 179/404 (44%), Positives = 242/404 (59%), Gaps = 26/404 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +QF+ Q I +L D F +MPTGGGKS+CYQ+PAL K G +VVS
Sbjct: 8 LQEALKKYFGFSQFKGLQEQVISNILGDNDTFVIMPTGGGKSLCYQLPALMKEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV ++ E+GIA SS ++K K+ D+ +G +LLYV PE L
Sbjct: 68 PLIALMKNQVDAIRGVSSEEGIAHVLNSSLNKTEIK-KVKSDITNG--VTKLLYVAPESL 124
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILAL 199
T + + ++ VA+DEAHCIS WGHDFRP YR L + + L D +PI+ L
Sbjct: 125 TKEENI-----EFFNGVTISFVAVDEAHCISEWGHDFRPEYRNLRKIISRLGDNIPIIGL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA PKVQ+D++++L + + V K+SFNRPNLFYEVR K + AD+ +K N
Sbjct: 180 TATATPKVQEDIIKNLGMVDAKVFKASFNRPNLFYEVRPK--TKNVDADIIRFVKQNSGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R +EL+ L GIS YHAG + K R+ D ++ VVVAT+AFG
Sbjct: 238 SGIVYCLSRKKVEELAQVLQVNGISAVPYHAGFDAKTRAKYQDMFLMEDVDVVVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 298 MGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDVEKLEKFMSGK-- 355
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ +++ ++V Y E S RRK IL FGE+
Sbjct: 356 ------PVAEQEIGQAL--LQEIVAYAETSMSRRKFILHYFGEE 391
>gi|290477101|ref|YP_003470014.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
gi|289176447|emb|CBJ83256.1| ATP-dependent DNA helicase [Xenorhabdus bovienii SS-2004]
Length = 608
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/397 (43%), Positives = 239/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRKTFGYQQFRPGQQQVIDAVLDGRDCLVVMPTGGGKSLCYQIPALINNGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+ E L+STQ + + I + G S++LLY+ PE T F+
Sbjct: 75 ISLMKDQVDQLRANGVEAECLNSTQNREQQVDIIQRCRQG--SIKLLYIAPERLVTDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L H L+A+DEAHCIS WGHDFRP YR L R P++P +ALTATA
Sbjct: 133 DQLHDWHPV----LLAVDEAHCISQWGHDFRPEYRALGQFRRRFPELPFIALTATADKTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ L L +PL+ SSF+RPN+ Y + +YK L L S ++ I+YC
Sbjct: 189 RQDITRLLELHDPLIHLSSFDRPNIRYTLVEKYKPL-----DQLWSFVRGQQGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
RT +E + L G+S A YHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRTKVEETAERLQKRGLSVAPYHAGLDNNQRAWVQDAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L++ D + L + + Q
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILFFDPADMAWLRRCLEEKPAGEQQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|163756913|ref|ZP_02164021.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
gi|161323149|gb|EDP94490.1| putative ATP-dependent DNA helicase [Kordia algicida OT-1]
Length = 732
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 247/405 (60%), Gaps = 28/405 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ HFG QF+ Q + I++++S ++ F +MPTGGGKS+CYQ+PAL K G +VVS
Sbjct: 8 LYKELKKHFGFGQFKGLQEEVIKSIISNKNTFVIMPTGGGKSLCYQLPALMKEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV L+ + GIA L+S+ T ++ ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDALRGISSQDGIA-HVLNSSLTKAETRQVKEDITNG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
++ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D +PI+ LT
Sbjct: 125 TKEENVAFLRTVQ----ISFMAVDEAHCISEWGHDFRPEYRNLKNIIGKIGDNIPIIGLT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNL+YEVR K D AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGMTDANTFKASFNRPNLYYEVRPK--TKDVDADIIRFIKQNQGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R +EL+ L GI+ YHAGL+ K R+ D ++ VVVAT+AFGM
Sbjct: 239 GIVYCLSRKRVEELAQVLQVNGINAVPYHAGLDPKKRAKHQDMFLMEDCDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 299 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLE--------- 349
Query: 381 NSQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I ++V Y E S RRK IL FGE+
Sbjct: 350 ---KFMSGKPVAEQEIGHALLQEVVAYAETSISRRKFILHYFGEE 391
>gi|374385551|ref|ZP_09643054.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
gi|373225253|gb|EHP47587.1| ATP-dependent DNA helicase RecQ [Odoribacter laneus YIT 12061]
Length = 735
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 179/407 (43%), Positives = 242/407 (59%), Gaps = 30/407 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHEK L+ +FG F+ Q I+ VL+G++ F LMPTGGGKS+CYQ+PAL G
Sbjct: 18 LHEK------LKEYFGFDNFKGNQEAIIRNVLAGKNTFVLMPTGGGKSLCYQLPALILDG 71
Query: 80 IVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ +G+A FL+S+ T K+ ED+ GK +LLY
Sbjct: 72 TAIVISPLIALMKNQVDAMRSFSAAEGVA-HFLNSSLTKNEILKVKEDILEGKT--KLLY 128
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + LKKI ++ A+DEAHCIS WGHDFR YRK+ + + P
Sbjct: 129 VAPESLTKDSNVEFLKKIK----ISFFAVDEAHCISEWGHDFRTEYRKIRPIVEQIGKAP 184
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
I+ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K+ D D+ +K
Sbjct: 185 IIALTATATPKVQHDIQKNLDMLDAEVFKSSFNRPNLYYEVRPKN---DPTKDIIKFIKK 241
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ I+YCL R +EL+ L GI A YHAG++ RS+ D ++ V+VAT
Sbjct: 242 HEGKSGIIYCLSRKKVEELAEVLCINGIKAAPYHAGMDATTRSANQDKFLMEEVDVIVAT 301
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + YY D +++E
Sbjct: 302 IAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICITYYSYKDIQKLE---- 357
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K Q E+ K + + V Y E S CRRK +L FGE
Sbjct: 358 ----KFMQGKPIAEQEIGKQL--LMETVSYAETSLCRRKVLLHYFGE 398
>gi|225450636|ref|XP_002282715.1| PREDICTED: ATP-dependent DNA helicase Q-like 1-like [Vitis
vinifera]
Length = 602
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 173/404 (42%), Positives = 244/404 (60%), Gaps = 30/404 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA +PG+ +VV PL++L+++
Sbjct: 198 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 257
Query: 94 QVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L GI FLSS QT + ++L KPS +LLYVTPE + F LK
Sbjct: 258 QIITLNLNFGIPATFLSSQQTASQAAAVLKELRKDKPSCKLLYVTPERIAGNSTFFEILK 317
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR+L L+ PDVP++ALTATA V+KD+
Sbjct: 318 SLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPVRKDI 377
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ SL + + LVL++SF+R NL YEV K LL D + +L C I
Sbjct: 378 LNSLRIPHALVLETSFDRSNLKYEVIGKTKEPLKQLGQLLKDRFKNL----------CGI 427
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL ++ C E+S +L+ I YHAGL+ + R V W + + ++ AT+AFGMG
Sbjct: 428 VYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMG 487
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V H + KS+E +YQESGRAGRD LP+ + Y D R+ +L
Sbjct: 488 INKPNVRFVIHNTMSKSIENYYQESGRAGRDDLPAVCMALYQKKDFSRVVCMLRNGHGCK 547
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQV 424
S++F K++++ +M YCE + CRR+ +LE FGE +
Sbjct: 548 SETF-------KEAMTQARKMQQYCELKTECRRQTLLEHFGESL 584
>gi|193786741|dbj|BAG52064.1| unnamed protein product [Homo sapiens]
Length = 435
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 170/388 (43%), Positives = 241/388 (62%), Gaps = 12/388 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL G +VVSPLIAL+
Sbjct: 24 FGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALLAKGNTIVVSPLIALI 83
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + Q + ++ DL+ KP ++LY+TPE+ A+ F L
Sbjct: 84 QDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYITPEMAASSSFQPTLN 143
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV
Sbjct: 144 SLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPCVALTATATPQVQEDV 203
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT-------CAI 262
+L L+ P+ + K+ R NLFY+V++K+L+ D Y +L LKA G C I
Sbjct: 204 FAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFCLKALGQEADKGLSGCGI 263
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC R C++L+ LS G++ AYHAGL R+ V +DW+ + V+VAT++FGMG+
Sbjct: 264 VYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWMEEKVPVIVATISFGMGV 323
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +DR ++ F++ K +K
Sbjct: 324 DKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRNDRDQVSFLIRKEVAKLQ 383
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSG 410
+ + S K +I F +V +CE G
Sbjct: 384 EKRGNKA-SDKATIMAFDALVTFCEELG 410
>gi|254567515|ref|XP_002490868.1| ATP-dependent helicase [Komagataella pastoris GS115]
gi|238030664|emb|CAY68588.1| ATP-dependent helicase [Komagataella pastoris GS115]
gi|328351249|emb|CCA37649.1| bloom syndrome protein [Komagataella pastoris CBS 7435]
Length = 1302
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 165/402 (41%), Positives = 250/402 (62%), Gaps = 20/402 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVV 84
+LR F FR QL+A+ A LSG D F LMPTGGGKS+CYQ+PAL + G +VV
Sbjct: 534 ILRETFKLESFRSNQLEAVNATLSGEDVFVLMPTGGGKSLCYQLPALVQSGSTRGTTVVV 593
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TAT 143
SPLI+LM++QV L I ++S T+Q + ++++ L+SG L L+Y++PE+ +A+
Sbjct: 594 SPLISLMQDQVEHLIANKIKAGMINSKGTVQERRQMFDLLNSG--DLDLIYLSPEMISAS 651
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
S LK++H G L + +DEAHC+SSWGHDFRP Y+ L+ + PD+P++ALTATA
Sbjct: 652 NQARSSLKRLHRIGKLARIVVDEAHCVSSWGHDFRPDYKTLNYFKKEYPDIPVMALTATA 711
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTCA 261
V D++ +L L P K SFNR NLFY +V+ K LD+ + + +
Sbjct: 712 NEHVVMDIVHNLGLNKPQCFKQSFNRTNLFYKVQVKTKTHLDEITNMINGQYR---NQTG 768
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC + +C++ SA L GI C+ YHAG+ + R +V W S + +V+ AT+AFGMG
Sbjct: 769 IIYCHSKNSCEQTSARLIQNGIKCSFYHAGMTTEDRFAVQSAWQSDKIRVICATIAFGMG 828
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H +P+++E +YQE+GRAGRD S +++Y D R ++ ++ K+
Sbjct: 829 IDKPDVRFVIHLTVPRTLEGYYQETGRAGRDGNHSDCIMFYSYRDVRTLQTMIQKDVD-- 886
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
TRE + + ++ +++ YCE G+ CRR+++L+ F E
Sbjct: 887 ----LTRE-NKENHLNKLRKVIQYCENGTDCRRQQVLQYFNE 923
>gi|312129258|ref|YP_003996598.1| ATP-dependent DNA helicase recq [Leadbetterella byssophila DSM
17132]
gi|311905804|gb|ADQ16245.1| ATP-dependent DNA helicase RecQ [Leadbetterella byssophila DSM
17132]
Length = 773
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 240/396 (60%), Gaps = 20/396 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG FR +Q I++V+SG++ F +MPTG GKS+CYQ+PA G +V+SPLIA
Sbjct: 14 LKEIFGFDNFRGEQEKIIKSVISGKNTFVIMPTGAGKSLCYQLPATVLEGTAIVISPLIA 73
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI +FL+ST ++ D+ SG +LLY+ PE +
Sbjct: 74 LMKNQVDQLTAYGINAQFLNSTLNKSEMNRVKNDVISG--VCKLLYIAPESLTKEDNLEF 131
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAAPKVQ 208
LKK ++ VA+DEAHCIS WGHDFRP YRK+ + N +PI+ALTATA PKVQ
Sbjct: 132 LKKAK----ISFVAVDEAHCISEWGHDFRPEYRKIKDIIENIDTALPIVALTATATPKVQ 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ +SL + + ++ K+SFNR NL+YEVR K +A L + N IVYCL R
Sbjct: 188 LDIKKSLNMDDSVIFKTSFNRANLYYEVRPKQ---NAKKQLIKFVSQNRGKSGIVYCLSR 244
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ L+ G YHAGL+ + R D +++ +VVAT+AFGMGID+ DVR
Sbjct: 245 KKVEEIAELLNVNGFKALPYHAGLDPEVRMKNQDAFLNENCDIVVATIAFGMGIDKPDVR 304
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H++ PKS+E +YQE+GRAGRD + L++Y +DD ++E N+ KN
Sbjct: 305 FVVHYDAPKSLEGYYQETGRAGRDGIDGTCLMFYALDDITKLEKF---NKDKN-----VT 356
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER + K++ +MV Y CRR+++L FGEQ+
Sbjct: 357 ERDNAKAL--LMEMVAYSSLGVCRRRQLLSYFGEQM 390
>gi|90407207|ref|ZP_01215394.1| putative ATP-dependent DNA helicase RecQ [Psychromonas sp. CNPT3]
gi|90311630|gb|EAS39728.1| putative ATP-dependent DNA helicase RecQ [Psychromonas sp. CNPT3]
Length = 602
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 164/391 (41%), Positives = 240/391 (61%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I+ + +G+D +MPTGGGKS+C+QIPAL +PGI +V+SPLI+LM++
Sbjct: 17 FGYKSFRAGQKEVIEQLCAGKDALVVMPTGGGKSLCFQIPALIQPGICIVISPLISLMKD 76
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+A +L+S+ + + +I D+ GK L+LLY+ PE FM +LK +
Sbjct: 77 QVDTLQTCGVAAAYLNSSLSYPQQNQILNDMHQGK--LKLLYIAPERLLRHDFMQRLKTL 134
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+NL AIDEAHCIS WGHDFRP Y L L+ + P VP++ALTATA QKD++
Sbjct: 135 ----TINLFAIDEAHCISQWGHDFRPEYALLGQLKIHFPQVPLVALTATADHATQKDILA 190
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L +PL+ SF+RPN+ Y + +Y+ L+ L + L + I+YC R
Sbjct: 191 RLQFNDPLLSIHSFDRPNIEYLLIEKYRPLIQ-----LFNYLAEHQHESGIIYCTSRRRT 245
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E++ L G++ YHAGL R V D +I +VVATVAFGMGID+ +VR V
Sbjct: 246 EEIAQKLQGKGLNARCYHAGLELSERQLVQDKFIKDEVDIVVATVAFGMGIDKPNVRFVV 305
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H+ IPK++E++YQE+GRAGRD LP++++L+Y D R+ +L KN++ E
Sbjct: 306 HYEIPKNIESYYQETGRAGRDGLPAQAMLFYDPADPARVRAMLEKNEN---------EEQ 356
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + + MV + E CRR+ +L FGE
Sbjct: 357 RRIELHKLNTMVAFAEAQTCRRQVLLNYFGE 387
>gi|432104137|gb|ELK30964.1| ATP-dependent DNA helicase Q5 [Myotis davidii]
Length = 410
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 172/409 (42%), Positives = 245/409 (59%), Gaps = 13/409 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ 71
T + P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ
Sbjct: 3 THRASPFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGDKDVFVCMPTGAGKSLCYQ 62
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL GI +V+SPLIAL+++QV L + L+S Q K ++ DL+ KP
Sbjct: 63 LPALLAKGITIVISPLIALIQDQVDHLLALKVQVRSLNSKLPAQEKKELLSDLEQEKPRT 122
Query: 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191
+LLY+TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L
Sbjct: 123 KLLYITPEMAASASFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRL 182
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P +ALTATA P+V++DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L
Sbjct: 183 AHAPCVALTATATPQVREDVFAALHLKQPVAAFKTPCFRANLFYDVQFKELLSDPYGNLR 242
Query: 251 SV-LKANGDT--------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 301
LKA G C I+YC R C++L+ L G+S AYHAGL R+ V
Sbjct: 243 DFCLKALGQKAGKGVLSGCGIIYCRTREACEQLAIELGYRGLSAKAYHAGLKASERTLVQ 302
Query: 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
++W+ + V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LY
Sbjct: 303 NEWMEEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLY 362
Query: 362 YGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG 410
Y DR ++ F++ K +K + + S K ++ F +V +CE G
Sbjct: 363 YSRSDRDQVSFLIRKEVAKLQEKRGNKA-SDKAALQAFEALVTFCEELG 410
>gi|91775306|ref|YP_545062.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91775450|ref|YP_545206.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709293|gb|ABE49221.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|91709437|gb|ABE49365.1| ATP-dependent DNA helicase RecQ [Methylobacillus flagellatus KT]
gi|167042457|gb|ABZ07183.1| putative DEAD/DEAH box helicase [uncultured marine microorganism
HF4000_ANIW133B20]
Length = 611
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 243/403 (60%), Gaps = 14/403 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A +LL FG++ FR +Q + V+ G D LMPTGGGKS+CYQIP+L +PG+ +VV
Sbjct: 6 AAQQLLEQTFGYSAFRGEQEAIVNHVVDGGDALVLMPTGGGKSLCYQIPSLLRPGVGIVV 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ GI FL+S+ +Y+ L G+ L++LYV PE TP
Sbjct: 66 SPLIALMQDQVDALRQLGIQAAFLNSSLDADTARHVYQALMRGE--LKVLYVAPERLMTP 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+S L I R + L AIDEAHC+S WGHDFRP YR+L+ L P+VP +ALTATA
Sbjct: 124 SFLSTLHDIQQRFGIALFAIDEAHCVSQWGHDFRPEYRQLTVLHEEFPEVPRIALTATAD 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIV 263
+ +++E L L++ SSF+RPN+ Y V K ++A L L++ + + I+
Sbjct: 184 TPTRNEIVERLGLEHARQFISSFDRPNIRYRVALK---NNARKQLLGFLESEHPNDAGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +E +A+L G YHAGL+ R + ++ ++VATVAFGMGID
Sbjct: 241 YCLSRRKVEETAAWLKEQGWDALPYHAGLDATVRQANQQRFLREEGIIMVATVAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H ++PKSME +YQE+GRAGRD L + + + YG+ D M +L S
Sbjct: 301 KPNVRFVVHLDLPKSMEGYYQETGRAGRDGLDADAWMVYGLGDVVNMRQLLD-----GSD 355
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ R+R ++ + ++ +CE + CR + IL FGEQ G
Sbjct: 356 TPEERKRLERQKL---DALLGFCESTACRHQAILRYFGEQHPG 395
>gi|410095931|ref|ZP_11290923.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
gi|409227962|gb|EKN20857.1| ATP-dependent DNA helicase RecQ [Parabacteroides goldsteinii
CL02T12C30]
Length = 727
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 249/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K++L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P++ G
Sbjct: 1 MAKKDSLTEHLKTHFGFDTFKGNQKAIIENVLAGNDTFVLMPTGGGKSLCYQLPSIMMEG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ D+ +G+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKADIMAGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L+ ++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVEFLRNVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YEVR KD ++ ++ +KA
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEVRPKD--ENVDREIIKYIKA 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N IVYCL R +E + L A GI AYHAG++ RS+ D ++ + V+VAT
Sbjct: 232 NEGKSGIVYCLSRKKVEEFADILKANGIKALAYHAGMDSGQRSANQDAFLLEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 348 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 391
>gi|441500281|ref|ZP_20982448.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
gi|441435974|gb|ELR69351.1| ATP-dependent DNA helicase RecQ [Fulvivirga imtechensis AK7]
Length = 723
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 164/400 (41%), Positives = 248/400 (62%), Gaps = 25/400 (6%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ HFG+ FR +Q + I +L GRD LMPTGGGKS+CYQ+PAL G+ +V+SPLI
Sbjct: 12 ILKKHFGYDSFRHQQKEIIHHILEGRDALVLMPTGGGKSLCYQVPALIFEGVTIVISPLI 71
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGF 146
ALM++QV L+ GI+ +L+S+ + Q + ++ L + L+LLY+ PE ++ GF
Sbjct: 72 ALMKDQVDALRLNGISAAYLNSSLSQQEQAEVMRLLRDNR--LKLLYLAPERLVSGDKGF 129
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ LK + L+++AIDEAHCIS WGHDFRP Y +L++L++ P+VP++ALTATA
Sbjct: 130 INFLK---DQAKLSMIAIDEAHCISQWGHDFRPEYTQLATLKSVFPEVPVVALTATADKL 186
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
Q D+++ L L NP SSFNR N++Y V K +Y L L + D I+Y L
Sbjct: 187 TQDDILQQLKLHNPKKFVSSFNRENIYYFVSPKR---RSYDQLLQFLNKHKDDTGIIYTL 243
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R + + L+ L A G YHAGL+ R D +I + +++ AT+AFGMGID+ +
Sbjct: 244 SRASAESLAEQLIADGYDARPYHAGLDRDVRDKHQDLFIKDQIKIITATIAFGMGIDKSN 303
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++PK++E +YQE+GRAGRD L S++LL+Y D +++ +SF
Sbjct: 304 VRFVVHMDLPKNIEGYYQETGRAGRDGLKSEALLFYSYADVKKL------------KSFV 351
Query: 387 TRERSSKKS---ISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E ++++S + ++M +Y E CRRK +L F E+
Sbjct: 352 EVEGNTQQSEIMLKKLNEMAEYGELRTCRRKYLLNYFDEE 391
>gi|436838278|ref|YP_007323494.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384069691|emb|CCH02901.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 735
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 248/395 (62%), Gaps = 19/395 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ ++G+ +FR Q I+++LSGRD LMPTGGGKS+C+QIPAL +PG+ +VVSPLIA
Sbjct: 27 LKRYYGYDRFRPMQEAVIRSILSGRDTVVLMPTGGGKSVCFQIPALMQPGLCVVVSPLIA 86
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV + GIA +++S+Q + + E+ G+ ++LLYV+PE + F +
Sbjct: 87 LMKDQVEAMHLNGIAAAYINSSQGAKEIRAVEENCRKGQ--IKLLYVSPEKLLSESFYTF 144
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L + L++ AIDEAHCISSWGHDFRP Y +L++LR + P+VPI+ALTATA ++
Sbjct: 145 LNSLK----LSMFAIDEAHCISSWGHDFRPEYTQLNTLRRWFPNVPIIALTATADRLTRQ 200
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ + L + +P V SFNR NL +V + + +L DT I+YCL R
Sbjct: 201 DIADRLAMHDPAVFIDSFNRTNLSLQVLPGT---NRIGQIAKLLSLKPDTSGIIYCLSRK 257
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+C+ ++A L G S A YHAG++ R+ V + ++ +++ AT+AFGMGID+ +VR
Sbjct: 258 SCESVAAKLIEKGYSAAYYHAGMDPNERARVQEAFLRDDVRIMCATIAFGMGIDKSNVRW 317
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+N+PK++E +YQE GRAGRD LPS+++L+Y D + +L++N N Q
Sbjct: 318 VMHYNMPKNIEGYYQEIGRAGRDGLPSQTVLFYSFADVATYKDMLTENNPANLQV----- 372
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++ +M Y E + CRR+ +L F EQ+
Sbjct: 373 -----QLAKLERMQQYAEANTCRRQILLSYFSEQL 402
>gi|393785533|ref|ZP_10373683.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
gi|392662288|gb|EIY55852.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
Length = 726
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 244/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +L GRD F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKQYFGFDKFKGNQEAIIQNLLDGRDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKADILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + + KSSFNRPNL+YEVR K D D+ ++ N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQIFKSSFNRPNLYYEVRPKTANIDR--DIIKFIRNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGRCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEEYL 391
>gi|325280334|ref|YP_004252876.1| ATP-dependent DNA helicase RecQ [Odoribacter splanchnicus DSM
20712]
gi|324312143|gb|ADY32696.1| ATP-dependent DNA helicase RecQ [Odoribacter splanchnicus DSM
20712]
Length = 727
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 175/397 (44%), Positives = 237/397 (59%), Gaps = 23/397 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG F+ Q I+ VL+G + F LMPTGGGKS+CYQ+PAL G +++SPLIA
Sbjct: 11 LKEYFGFDHFKGNQEAIIKNVLAGNNTFVLMPTGGGKSLCYQLPALLLEGTAIIISPLIA 70
Query: 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ +G+A FL+S+ T + ED+ SGK ++LYV PE
Sbjct: 71 LMKNQVDAMRSFSAAEGVA-HFLNSSLTKNEILNVKEDILSGKT--KMLYVAPESLTKES 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LKKI ++ A+DEAHCIS WGHDFR YRK+ + + PI+ALTATA P
Sbjct: 128 NVEFLKKIK----ISFFAVDEAHCISEWGHDFRTEYRKIRPIVEEIGKAPIIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K + I+YC
Sbjct: 184 KVQNDIQKNLDMMDAQVFKSSFNRPNLYYEVRPKQ--GDVTKDIIKFIKNHEGKSGIIYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ LS GI A YHAG++ RS+ D ++ V+VAT+AFGMGID+
Sbjct: 242 LSRKKVEELAEVLSINGIKAAPYHAGMDASTRSTNQDRFLMEEVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H++IPKS+E +YQE+GRAGRD L YY D +++E K Q
Sbjct: 302 DVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICLTYYSFKDIQKLE--------KFMQGK 353
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ K + + V Y E S CRRK +L FGE
Sbjct: 354 PIAEQEIGKQL--LMETVAYAETSLCRRKVLLHYFGE 388
>gi|160890574|ref|ZP_02071577.1| hypothetical protein BACUNI_03017 [Bacteroides uniformis ATCC 8492]
gi|317479884|ref|ZP_07939001.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|423304003|ref|ZP_17282002.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|423307273|ref|ZP_17285263.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
gi|156859573|gb|EDO53004.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis ATCC 8492]
gi|316903958|gb|EFV25795.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_1_36]
gi|392685931|gb|EIY79239.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T00C23]
gi|392690525|gb|EIY83788.1| ATP-dependent DNA helicase RecQ [Bacteroides uniformis CL03T12C37]
Length = 727
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 244/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LIDQLKKYFGFDTFKGNQEAIIENLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVRSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ +
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKALLHYFGEEYI 392
>gi|224026746|ref|ZP_03645112.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
gi|224019982|gb|EEF77980.1| hypothetical protein BACCOPRO_03503 [Bacteroides coprophilus DSM
18228]
Length = 608
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 170/398 (42%), Positives = 243/398 (61%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K L+ +FG+ QFR Q + I +L RD LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MLKTLKSYFGYTQFRPLQQEIITCILEKRDTLVLMPTGGGKSICYQLPALMMEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GI L+S+ V + + G+ ++LLY++PE L +
Sbjct: 61 PLISLMKDQVESLQANGIIARALNSSNDETVNANLRFECMQGR--VKLLYISPERLLSEL 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ LK I ++L AIDEAHCIS WGHDFRP Y +L LR P+VPI+ALTATA
Sbjct: 119 NFL--LKDIR----VSLFAIDEAHCISQWGHDFRPEYTQLKVLRQQFPNVPIVALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D+++ L ++NP V SSF+RPNL EV+ + + + + I+Y
Sbjct: 173 KITRQDIVQQLAMRNPQVFISSFDRPNLSLEVKRGYQQKEKIRSILQFIDRHPGESGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R T ++++ L G+ A YHAGL+ AR + DD+I+ R Q+V AT+AFGMGID+
Sbjct: 233 CMSRNTTEKVAEMLEDHGLHVAVYHAGLSTAARDAAQDDFINDRVQIVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD LPS +LL+Y D +LSK
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGDI----VLLSK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+ + ++ ++M Y E CRR+ +L FGE
Sbjct: 341 FAAESNQQEINLEKLNRMQQYAETDICRRRILLNYFGE 378
>gi|327265368|ref|XP_003217480.1| PREDICTED: Bloom syndrome protein homolog [Anolis carolinensis]
Length = 1383
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 178/425 (41%), Positives = 243/425 (57%), Gaps = 10/425 (2%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M +SP A + + + ++K+ FG FR Q +AI A L G DCF LM
Sbjct: 609 MVESPSARNPSLERFRGCSFPHSNEMMKVFHKRFGLHHFRTNQQEAINAALLGEDCFVLM 668
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV L I +L+ +T ++I
Sbjct: 669 PTGGGKSLCYQLPACILVGVTIVISPLRSLIVDQVQKLTSMDIPATYLTGDKTDAEASRI 728
Query: 121 YEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
Y L P ++LLYVTPE + G MS L+ ++ R LL IDEAHC+S WGHDFR
Sbjct: 729 YMQLSKKDPIIKLLYVTPEKVCSSGRLMSTLENLYQRQLLARFVIDEAHCVSQWGHDFRQ 788
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
Y++L+ LR VP++ALTATA P+VQKD++ L + P V SFNR NL Y+V K
Sbjct: 789 DYKRLNMLRKKFASVPMMALTATANPRVQKDILNQLEMLKPQVFSMSFNRHNLKYDVLPK 848
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
A L + K + I+YCL R CD +++ L G+S AYHAGL D+ R
Sbjct: 849 RPKSVALDCLQWIRKYHPYDSGIIYCLSRYECDSMASNLQKAGLSALAYHAGLPDETRDI 908
Query: 300 VLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358
V WI+ Q++ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD S
Sbjct: 909 VQQKWINQDGCQIICATIAFGMGIDKPDVRFVIHASLPKSIEGYYQESGRAGRDGERSHC 968
Query: 359 LLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKIL 417
LL+Y D R+ ++ + NS + T ++ MV YCE CRR ++L
Sbjct: 969 LLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVECRRIQLL 1021
Query: 418 ESFGE 422
FGE
Sbjct: 1022 AYFGE 1026
>gi|427722202|ref|YP_007069479.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
gi|427353922|gb|AFY36645.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7376]
Length = 715
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 168/398 (42%), Positives = 234/398 (58%), Gaps = 15/398 (3%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ FR Q I+A L RD LMPTG GKS+C+Q+PAL K G+ +V+SPLIA
Sbjct: 11 LKHFFGYESFRPGQKTVIEAALQNRDVLALMPTGAGKSICFQLPALLKSGLTVVISPLIA 70
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
LM++QV L + GI FL+ST + Q +++I L+ GK ++LLYV PE GF
Sbjct: 71 LMQDQVDSLTDNGIGATFLNSTLNLNQARSRIQAILN-GK--IKLLYVAPERLFNEGFQE 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + L+ +DEAHC+S WGHDFRP YR+L+ LR P VP A TATA +V+
Sbjct: 128 FLNDVTDSVGLSGFVVDEAHCVSEWGHDFRPEYRQLARLRRNYPQVPCHAFTATATERVR 187
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L L P +SFNRPNL+YEV K +Y + + + I+YC R
Sbjct: 188 QDIITQLALHTPSFHCTSFNRPNLYYEVIPKS--SRSYDQVLKYTRKHRGKSGIIYCSSR 245
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE+S L GI+ YHAG++DKAR+S D +I V+VAT+AFGMGI++ DVR
Sbjct: 246 KKVDEISDRLKNDGINALPYHAGMSDKARASHQDQFIRDDVPVIVATIAFGMGINKPDVR 305
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++P ++E +YQESGRAGRD P+ L Y + D ++ E+ +
Sbjct: 306 FVLHYDLPGNLERYYQESGRAGRDNEPADCALLYSVGDIKKAEYFI---------ELKDD 356
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
E+ + + +M+DY EG CRR L FGE +G
Sbjct: 357 EQEKRVAYQQLQKMIDYAEGIECRRTIQLSYFGESFVG 394
>gi|153809072|ref|ZP_01961740.1| hypothetical protein BACCAC_03380 [Bacteroides caccae ATCC 43185]
gi|423216745|ref|ZP_17203241.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
gi|149128405|gb|EDM19624.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae ATCC 43185]
gi|392629275|gb|EIY23282.1| ATP-dependent DNA helicase RecQ [Bacteroides caccae CL03T12C61]
Length = 726
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 243/402 (60%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ FG +F+ Q IQ +L GRD F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LINELKKCFGFNKFKGNQEAIIQNLLDGRDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVDFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R +EL+ L A GI+ YHAG++ R+ DD++ + +V+VAT+AFGMG
Sbjct: 238 IVYCLSRKRVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVEVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|110597180|ref|ZP_01385469.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
gi|110341371|gb|EAT59836.1| ATP-dependent DNA helicase, RecQ family:ATP-dependent DNA helicase
RecQ [Chlorobium ferrooxidans DSM 13031]
Length = 597
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 159/393 (40%), Positives = 243/393 (61%), Gaps = 18/393 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
+R FG +FR Q ++A+L RD F +MPTGGGKS+CYQ+PA+ PG +V+SPLIA
Sbjct: 1 MRKVFGFREFRPNQEKIVRAILEKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVISPLIA 60
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV G + GI FL+S+Q + + + +L S SL LLYV PE F
Sbjct: 61 LMKDQVDGARANGIRAAFLNSSQLPEERESVMRELLSN--SLDLLYVAPERFTFDHFREL 118
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L +++ +++ IDEAHC+S WGHDFRP Y LS+L + PD+P+ A TATA +VQ+
Sbjct: 119 LGRVN----ISMAVIDEAHCVSEWGHDFRPDYLSLSALVSLFPDLPVSAFTATATHRVQQ 174
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ + L+NPL++++SF+RPNLFY+VR+K+ D A + ++LKAN I+Y R
Sbjct: 175 DILDRIALRNPLIVRASFDRPNLFYDVRFKEKPD---AQIVAILKANKGKAGIIYRTSRK 231
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++ +A L A G YHAGL+D R + +I +V+VAT+AFGMGID+ ++R
Sbjct: 232 SVNDTAAMLQARGFRALPYHAGLSDDERKRNQEAFIRDEVEVIVATIAFGMGIDKSNIRF 291
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E +YQE+GRAGRD P+ L + D ++ F + + ++
Sbjct: 292 VIHADLPKSIENYYQETGRAGRDGEPAHCTLLFAQGDIPKVRFFIDSMLDETERA----- 346
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+++ +++ + S CRR +L FGE
Sbjct: 347 ----RALDALTRVTSFASTSVCRRITLLNYFGE 375
>gi|86140388|ref|ZP_01058947.1| putative ATP-dependent DNA helicase [Leeuwenhoekiella blandensis
MED217]
gi|85832330|gb|EAQ50779.1| putative ATP-dependent DNA helicase [Leeuwenhoekiella blandensis
MED217]
Length = 733
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 180/402 (44%), Positives = 243/402 (60%), Gaps = 30/402 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q D I++++ G+ F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 12 LKKYFGFSQFKGLQEDVIKSIIEGKHTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 71
Query: 90 LMENQVIGL----KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
LM+NQV L KE GIA SS ++K ++ ED+ +G +LLYV PE LT
Sbjct: 72 LMKNQVDALRGISKENGIAHVLNSSLNKGEIK-QVKEDIANG--ITKLLYVAPESLTKEE 128
Query: 145 G--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTA 201
F+ K ++ VAIDEAHCIS WGHDFRP YR L + + D+PI+A+TA
Sbjct: 129 NVEFLRSQK-------ISFVAIDEAHCISEWGHDFRPEYRNLRQIIKRIGDDIPIIAVTA 181
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+M++L + K+SFNRPNL+YE+R K + AD+ +K N
Sbjct: 182 TATPKVQEDIMKNLGMSGANAFKASFNRPNLYYEIRPK--TKNVDADIIRFVKQNQGKSG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L GIS YHAGL+ K+R D ++ VVVAT+AFGMG
Sbjct: 240 IIYCLSRKRVEELAQVLQVNGISAVPYHAGLDAKSRVKHQDMFLMEDVDVVVATIAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 300 IDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGK---- 355
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ ++V Y E S RRK IL FGE+
Sbjct: 356 ----PVAEQEIGHAL--LQEVVAYAETSMSRRKFILHYFGEE 391
>gi|240960494|ref|XP_002400557.1| DNA helicase, putative [Ixodes scapularis]
gi|215490700|gb|EEC00343.1| DNA helicase, putative [Ixodes scapularis]
Length = 981
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 176/421 (41%), Positives = 254/421 (60%), Gaps = 22/421 (5%)
Query: 25 ALVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAKP--GI 80
AL + L FGH FR Q A++AV +D F MPTG GKS+CYQ+PA+ P +
Sbjct: 9 ALREALETVFGHTAFRSGLQEKAVEAVAQCAQDVFVSMPTGAGKSLCYQLPAVVTPDSSV 68
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM +Q+ L++ GI E ++ST + ++ DL S P RLLYVTPE
Sbjct: 69 TVVVSPLIALMSDQLQKLRDLGIDAETINSTMKKSERDRVRSDLLSMSPETRLLYVTPEQ 128
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT GF LK +H G L AIDEAHC+S WGHDFRP Y KL +R+ PDVP++ALT
Sbjct: 129 VATEGFQGILKALHRIGKLARFAIDEAHCVSEWGHDFRPDYLKLGRVRDMFPDVPVVALT 188
Query: 201 ATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANG- 257
ATA+ KV D++ L L+ P+ + K+S R NL+Y+V +K+ L++ + +L LKA G
Sbjct: 189 ATASAKVFDDILVQLRLRQPVAIFKTSSFRANLYYDVEFKEALEEPFENLKGFALKALGA 248
Query: 258 ----DTC-----AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
+ C IVYC R C+E+S L++ G+ YH G+ R +W R
Sbjct: 249 DWDSEDCKRRGSGIVYCRTRDACEEVSLKLTSLGLLTKPYHGGMKPSEREENQAEWTEGR 308
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
V+ ATV+FGMG+DR VR V H+++P+S+ A+YQESGRAGRD PS +YY DR+
Sbjct: 309 LPVIAATVSFGMGVDRAMVRFVAHWSVPQSVPAYYQESGRAGRDGRPSYCRIYYSRRDRK 368
Query: 369 RMEFILSKN--QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ F++ ++ +++N++ ++ + F +MV++CEG+ CR + FG+ +
Sbjct: 369 AITFLIQQDGKRARNNRGKVV----AEAAAKAFEKMVEFCEGTTCRHAVLCREFGDDLDR 424
Query: 427 C 427
C
Sbjct: 425 C 425
>gi|255690572|ref|ZP_05414247.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
gi|423301599|ref|ZP_17279622.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
gi|260624034|gb|EEX46905.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii DSM 17565]
gi|408471592|gb|EKJ90123.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
Length = 726
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 243/402 (60%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +LSG+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIIQNLLSGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIEQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKRVEELAEILQANGINARPYHAGMDSVTRTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|194901954|ref|XP_001980516.1| GG17198 [Drosophila erecta]
gi|190652219|gb|EDV49474.1| GG17198 [Drosophila erecta]
Length = 1457
Score = 324 bits (830), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 171/413 (41%), Positives = 244/413 (59%), Gaps = 19/413 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 695 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 754
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 755 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 814
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 815 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 874
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKAN-GDTC 260
P+V+ D++ L L+N SSFNR NL Y V K LDD + +++
Sbjct: 875 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGASTLDD----ISRYIRSKPAHFS 930
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE S + G+ AYHAGL D R DW++ + +V+ AT+AFGM
Sbjct: 931 GIIYCLSRKECDETSKRMCKDGVRAVAYHAGLTDTEREGRQKDWLTGKIRVICATIAFGM 990
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ ++
Sbjct: 991 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYADMLRIKKMMDSDK-- 1048
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLG--CVAS 430
+ + K + + ++V YCE + CRR + L+ FGE C+A+
Sbjct: 1049 -----ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLAN 1096
>gi|384098146|ref|ZP_09999265.1| ATP-dependent DNA helicase recQ [Imtechella halotolerans K1]
gi|383836292|gb|EID75705.1| ATP-dependent DNA helicase recQ [Imtechella halotolerans K1]
Length = 733
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 244/401 (60%), Gaps = 28/401 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q D I+++++ ++ F +MPTGGGKS+CYQ+PAL K G +V+SPLIA
Sbjct: 12 LKHYFGFGKFKGLQEDVIKSIINNQNTFVIMPTGGGKSLCYQLPALVKDGTAIVISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ GIA SS +VK ++ +D+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSNNGIAHVLNSSLTKTEVK-QVMQDIKSG--ITKLLYVAPESLTKED 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ L+ I ++ VA+DEAHCIS WGHDFRP YR + ++ L D+PI+ LTATA
Sbjct: 129 YIEFLRTIQ----ISFVAVDEAHCISEWGHDFRPEYRNIRAIIKRLGDDIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YEVR K + AD+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGMTDAKTFKASFNRPNLYYEVRPK--TKNVDADIIRFIKQNPGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I ++V Y E S RRK IL FGE+
Sbjct: 351 FMSGKPVAEQEIGHALLQEIVAYAETSMSRRKFILHYFGEE 391
>gi|427416527|ref|ZP_18906710.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
gi|425759240|gb|EKV00093.1| ATP-dependent DNA helicase RecQ [Leptolyngbya sp. PCC 7375]
Length = 736
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 164/402 (40%), Positives = 242/402 (60%), Gaps = 14/402 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ FG+ FR Q I+ VL +D +MPTGGGKS+CYQ+PAL + G+ +VV
Sbjct: 12 SLEAALKHFFGYDDFRHYQRAIIEQVLKNQDVLVIMPTGGGKSLCYQLPALLRLGVTIVV 71
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ GIA FL+S+ T + L G ++LLY+ PE P
Sbjct: 72 SPLIALMQDQVRSLEDNGIAATFLNSSLTFNEVRDREQALLRG--DIKLLYLAPERLMNP 129
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L++I L+ AIDEAHC+S WGHDFRP YR+L L+ P VP++ALTATA
Sbjct: 130 SFWPLLEQIQQTVGLSAFAIDEAHCVSEWGHDFRPEYRQLFQLKQQFPQVPVMALTATAT 189
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V++D+++ L L +P V S FNR NL+YEV K +Y L ++K I+Y
Sbjct: 190 ERVRQDIIQQLRLNDPQVFVSGFNRQNLYYEVTPKT--KQSYDHLLKLVKQQSG-AGIIY 246
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +E++ L GIS YHAGL+ K R + +I +++VAT+AFGMGI++
Sbjct: 247 CLSRKRVNEIAFRLKQDGISALPYHAGLSAKERQGNQEQFIRDDVRIIVATIAFGMGINK 306
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H+++P+++E++YQESGRAGRD P+ +++ D +E+++S+ + Q
Sbjct: 307 PDVRFVIHYDLPRTIESYYQESGRAGRDGDPANCTVFFSYADVATVEYLISQKPDEQEQR 366
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ +++Y E + CRRK L FGE G
Sbjct: 367 IARQQ---------LRHVINYAESAVCRRKIQLSYFGESFPG 399
>gi|223558023|gb|ACM91029.1| ATP-dependent DNA helicase RecQ [uncultured bacterium URE4]
Length = 731
Score = 324 bits (830), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 180/418 (43%), Positives = 245/418 (58%), Gaps = 29/418 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG F+ Q I+ ++ G + F LMPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 12 LKHFFGFDAFKGDQERIIRHLVDGGNAFVLMPTGGGKSLCYQLPALVMEGTAIVISPLIA 71
Query: 90 LMENQVIGLKE-----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
LM+NQV ++ GIA FL+S+ + ++ EDL SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGFVESGDGIA-HFLNSSLSRTQVAEVREDLLSG--VTKLLYVAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ LK+IH ++ A+DEAHCIS WGHDFRP YRK+ S+ + P++ALTATA
Sbjct: 129 ENIALLKEIH----ISFYAVDEAHCISEWGHDFRPEYRKIRSIIEDIQPAPVIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ D++++L + + V KSSFNRPNL+YEVR K D D+ ++ N I+Y
Sbjct: 185 PKVQSDILKNLRISDATVFKSSFNRPNLYYEVRDKV---DTEKDIIRFIRQNPGKSGIIY 241
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ LS GI YHAGL+ K R+ D ++ QV+VAT+AFGMGID+
Sbjct: 242 CLSRKKVEELAQLLSINGIQALPYHAGLDAKTRAENQDRFLMEDIQVIVATIAFGMGIDK 301
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H++IPKS+E +YQE+GRAGRD + YY D +++E K Q
Sbjct: 302 PDVRFVIHYDIPKSIEGYYQETGRAGRDGQEGLCITYYSYKDIQKLE--------KFMQG 353
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV----LGCVASVTHRVVSF 438
E+ K + ++ V Y E S CRRK +L FGE GC + H F
Sbjct: 354 KPVAEQEIGKQL--LAETVAYAESSQCRRKLLLNYFGEDYPQDNCGCCDNCLHPKAKF 409
>gi|373957711|ref|ZP_09617671.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
gi|373894311|gb|EHQ30208.1| ATP-dependent DNA helicase RecQ [Mucilaginibacter paludis DSM
18603]
Length = 731
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 178/416 (42%), Positives = 250/416 (60%), Gaps = 29/416 (6%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ K++L L+ FG F+ +Q I +LSG D F +MPTGGGKSMCYQ+PAL G
Sbjct: 2 IETKKSLFDNLQNFFGFDNFKGEQEAIITNILSGNDTFVIMPTGGGKSMCYQLPALMTDG 61
Query: 80 IVLVVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ +V+SPLIALM+NQV L+ G + FL+S+ T TK+ ED+ SGK +LLYV
Sbjct: 62 MAIVISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLTKSEITKVKEDVLSGKT--KLLYV 119
Query: 137 TPELTATPGFMSKLKKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPD 193
PE ++K + I L ++ VA+DEAHCIS WGHDFRP YRK+ + N +
Sbjct: 120 APES------LTKQENIDFLRLNSVSFVAVDEAHCISEWGHDFRPEYRKIRQVISNIGEN 173
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
+PI+ALTATA PKVQ+D+ ++L + N + KSSFNR NLFYEVR K + ++ +
Sbjct: 174 IPIIALTATATPKVQQDIQKNLQMNNATIYKSSFNRGNLFYEVRAKR---NVLKEIVRFV 230
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K + I+YCL R +E++ LS G+ YHAGL+ K R+ D ++ V+V
Sbjct: 231 KQHTGKSGIIYCLSRKKVEEVAEALSLNGVKALPYHAGLDAKVRADTQDRFLMEDVDVIV 290
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD L +Y D +++
Sbjct: 291 ATIAFGMGIDKPDVRYVIHHDVPKSMEGYYQETGRAGRDGGEGVCLAFYSEKDIDKLQKF 350
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ + + RE ++ +++DY E + CRRK+IL FGE GC
Sbjct: 351 MK------DKPVAEREIGTQI----LKEVIDYAESAVCRRKQILHYFGENFNEAGC 396
>gi|449471881|ref|XP_004175079.1| PREDICTED: LOW QUALITY PROTEIN: Bloom syndrome protein homolog
[Taeniopygia guttata]
Length = 1069
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 177/400 (44%), Positives = 236/400 (59%), Gaps = 10/400 (2%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++ + FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA G+ +V+S
Sbjct: 383 MMNIFHRKFGLHCFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSAGVTIVIS 442
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +QV LK IA +L+ +T +KIY L P ++LLYVTPE + A+
Sbjct: 443 PLRSLIIDQVQKLKTLDIAATYLTGDRTDADASKIYMQLSKKDPVIKLLYVTPEKVCASN 502
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
MS L+ ++ R LL IDEAHC+S WGHDFR Y++L+ LR VP++ALTATA
Sbjct: 503 RLMSTLENLYDRKLLARFVIDEAHCVSQWGHDFRQDYKRLNMLRRKFGSVPMMALTATAN 562
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P+VQKD++ L + P V SFNR NL Y+V K A L + K + I+Y
Sbjct: 563 PRVQKDILNQLEMLKPQVFTMSFNRHNLKYDVLPKKPKKVALDCLEWIKKYHPHDSGIIY 622
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGID 323
CL R CD +A L G++ AYHAGL D R V W++ QV+ AT+AFGMGID
Sbjct: 623 CLSRHECDTTAAILQKEGLAALAYHAGLTDSNRDLVQQKWVNQEGCQVICATIAFGMGID 682
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++ + NS
Sbjct: 683 KPDVRYVIHASLPKSIEGYYQESGRAGRDGEMSHCLLFYSYSDVTRLRRLILMEKDGNSH 742
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ T ++ MV YCE CRR ++L FGE
Sbjct: 743 TRQTH-------FNNLYSMVHYCENVVECRRVQLLAYFGE 775
>gi|327303226|ref|XP_003236305.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
gi|326461647|gb|EGD87100.1| ATP-dependent DNA helicase [Trichophyton rubrum CBS 118892]
Length = 1556
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 248/404 (61%), Gaps = 17/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
+R F FR QL+AI + LSG+D F LMPTGGGKS+CYQ+P++ + G+ +V+S
Sbjct: 697 MRETFKLRGFRPNQLEAINSTLSGKDTFVLMPTGGGKSLCYQLPSIIRTGKTKGVTIVIS 756
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LM++QV L++ + ++ + + I +L S + ++LLYVTPE+ A
Sbjct: 757 PLLSLMQDQVAHLQKLNVKAFLINGDVSKDERATIMNNLRSLRADSLIQLLYVTPEMLAK 816
Query: 144 PGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M S L ++HS L + IDEAHC+S WGHDFRP Y L ++R VP++ALTAT
Sbjct: 817 SRAMESVLLQLHSNDKLARIVIDEAHCVSQWGHDFRPDYTALGTMREKYSGVPVMALTAT 876
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A P VQ DV+ +L ++ V SFNRPNL YEVR K DA D+ ++ + + C
Sbjct: 877 ATPNVQVDVIHNLRMKGCEVFTQSFNRPNLTYEVRKKGRAQDALKDIADLITNDYPEKCG 936
Query: 262 IVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R TC+ ++ LS+ G+ A YHAGL+ K R +V DW S + V+VAT+AFGM
Sbjct: 937 IIYCLSRKTCERVAMQLSSKFGVKAAHYHAGLSSKDRFTVQRDWQSGKHNVIVATIAFGM 996
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IP+S+E +YQE+GRAGRD S+ LYY D + +++ KN+ +
Sbjct: 997 GIDKADVRFVIHHSIPQSLEGYYQETGRAGRDGKRSECYLYYAYYDSTSIGYMIKKNK-E 1055
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ R+R + ++ F CE + CRR +IL F E+
Sbjct: 1056 TTHEQKQRQRQMLRHVTQF------CENITDCRRAQILAYFDEK 1093
>gi|158290315|ref|XP_311930.4| AGAP002967-PA [Anopheles gambiae str. PEST]
gi|157017834|gb|EAA07614.4| AGAP002967-PA [Anopheles gambiae str. PEST]
Length = 1425
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 174/392 (44%), Positives = 237/392 (60%), Gaps = 10/392 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +VVSPL +L+ +
Sbjct: 649 FGLRTFRPIQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAVLTVGLTIVVSPLKSLILD 708
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV L I LS M +IY+DL S P L+LLYVTPE ++++ F + L
Sbjct: 709 QVQKLNSLDIPAGHLSGEANMADVQRIYDDLYSSCPELKLLYVTPEKISSSAKFQNLLSA 768
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ R LL + IDEAHC+S+WGHDFRP Y+KLS+LR P VPI+ALTATA P+V+ D++
Sbjct: 769 LYRRSLLGRIVIDEAHCVSAWGHDFRPDYKKLSALREQFPTVPIIALTATANPRVRMDIL 828
Query: 213 ESLCL-QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L ++ SFNRPNL Y V K + + + K IVYCL + C
Sbjct: 829 AQLKLARDTRWFLCSFNRPNLKYLVLPKKGVSTKAEMIELIRKRFPRDTGIVYCLSKKEC 888
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
D+L+ GI +YHAGL+D R + +WI R +VV AT+AFGMGID+ DVR V
Sbjct: 889 DQLADEFRRAGIKAKSYHAGLSDGVREATQKEWIGDRIKVVCATIAFGMGIDKPDVRYVL 948
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
H+ +PKS+E +YQESGRAGRD + +LYY D R ++ + S + + +
Sbjct: 949 HYCMPKSIEGYYQESGRAGRDGEIATCVLYYNYSDMLRYRKMMDNDTSISLE-------A 1001
Query: 392 SKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ +++ +MV+YCE + CRR + LE F E
Sbjct: 1002 KQIHMNNLFRMVNYCENVTDCRRTQQLEYFAE 1033
>gi|365987708|ref|XP_003670685.1| hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
gi|343769456|emb|CCD25442.1| hypothetical protein NDAI_0F01230 [Naumovozyma dairenensis CBS 421]
Length = 1110
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 165/407 (40%), Positives = 249/407 (61%), Gaps = 18/407 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PG 79
E + LR F FR QL+AI + L G+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 460 EEVYYRLRHTFKLPGFRPNQLEAINSTLIGKDVFVLMPTGGGKSLCYQLPAIVKSGKTKG 519
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L + I +SS T Q + + + GK L L+Y++PE
Sbjct: 520 TSIVISPLISLMQDQVEHLLDLNIKASMISSKGTTQQRKQTFSLFSQGK--LDLIYISPE 577
Query: 140 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ A+ + +KK++ G L + +DEAHC+SSWGHDFRP Y++L ++ P +P++
Sbjct: 578 MIASSKQCKRVIKKLYQEGNLARIIVDEAHCVSSWGHDFRPDYKELYFFKSEYPKIPMMV 637
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA V++D++ +L L+NP+ LK SFNR NLFYEV KD D+ ++ +K +
Sbjct: 638 LTATANEHVRQDIVTNLRLRNPVFLKQSFNRTNLFYEVLRKD--KDSIDEMIDAIKYHFT 695
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ I+YC + +C++++ L I C YHAG++ R + DW ++ QV+ ATVA
Sbjct: 696 EQSGIIYCHSKNSCEKVALQLQNNQIRCGYYHAGMDPDERMMIQRDWQRNKLQVICATVA 755
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR + HF +P+++E +YQE+GRAGRD PS + YY M D R ++ ++ K+
Sbjct: 756 FGMGIDKSDVRFIYHFTVPRTLEGYYQETGRAGRDGKPSYCIGYYSMKDVRAIQKMIQKD 815
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
S + + S +K +++ YCE CRRK +L F E+
Sbjct: 816 SSLD-------KISREKHFDKLQEVMKYCENIKECRRKLVLSYFNEE 855
>gi|344291164|ref|XP_003417306.1| PREDICTED: ATP-dependent DNA helicase Q5 [Loxodonta africana]
Length = 410
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 175/403 (43%), Positives = 245/403 (60%), Gaps = 12/403 (2%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q AI AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFGPERRVQSTLKKIFGFDSFKTPLQESAIMAVVKGDKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +V+SPLIAL+++QV L + L+S + Q K ++ DL+ KP +LLY+
Sbjct: 69 AKGITIVISPLIALIQDQVDHLLALKVHVASLNSKLSAQEKKEVLSDLEREKPQTKLLYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASASFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLSHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LK 254
+ALTATA +VQ+DV +L L+ P+ K+ R NLFY+V++K+LL D Y +L LK
Sbjct: 189 VALTATATLQVQEDVFAALHLKPPVATFKTPCFRANLFYDVQFKELLSDPYGNLRDFCLK 248
Query: 255 ANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
A G+ C IVYC R C++L+ LS G++ AYHAGL R V +W+
Sbjct: 249 ALGEKADKGPSGCGIVYCRTREACEQLAIELSYRGVNAKAYHAGLKAPDRMLVQSEWMEE 308
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY DR
Sbjct: 309 KVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRSDR 368
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG 410
++ F++ K +K + + S K +IS F +V +CE G
Sbjct: 369 DQVSFLIRKEVAKLQEKRGNKA-SDKAAISAFDALVTFCEELG 410
>gi|150025301|ref|YP_001296127.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
gi|149771842|emb|CAL43316.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium psychrophilum
JIP02/86]
Length = 731
Score = 323 bits (829), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 173/401 (43%), Positives = 244/401 (60%), Gaps = 25/401 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG QF+ Q I+++++ + F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFNQFKGLQEQVIKSIVAKHNSFVIMPTGGGKSLCYQLPALMQGGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSEAGIA-HVLNSSLTKTEIAQVKKDISSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+K ++ VAIDEAHCIS WGHDFRP YR L ++ L DVPI+ LTATA
Sbjct: 127 EEYVTFLQKEK----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIKLLGDVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + N K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMANANTFKASFNRPNLYYEVRTK--TKNVESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVEAIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNS 382
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE 360
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
F+ ++V Y E S RRK +L FGE+
Sbjct: 361 VGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|375255218|ref|YP_005014385.1| ATP-dependent DNA helicase RecQ [Tannerella forsythia ATCC 43037]
gi|363408301|gb|AEW21987.1| ATP-dependent DNA helicase RecQ [Tannerella forsythia ATCC 43037]
Length = 786
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 173/413 (41%), Positives = 250/413 (60%), Gaps = 33/413 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ + L +HFG + F+ Q + I+ VL+G+D F LMPTGGGKS+CYQ+P+L G LV+S
Sbjct: 66 ITEALLFHFGFSSFKGNQKEIIENVLAGKDTFVLMPTGGGKSLCYQLPSLMMDGTALVIS 125
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV ++ E G+A F++S+ ++ +D+ SGK +LLYV PE L
Sbjct: 126 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNRAAIEQVKQDILSGKT--KLLYVAPESL 182
Query: 141 TATP--GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
T GF+ ++K ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 183 TKEENIGFLRQVK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRPLIA 235
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +KAN
Sbjct: 236 LTATATPKVQHDIQKNLGMMDAKVFKSSFNRANLYYEIRPKG--KDIDREIIKYIKANEG 293
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E + L A GI YHAG++ + RS+ D ++ + V+VAT+AF
Sbjct: 294 KSGIIYCLSRKKVEEFADILCANGIKALPYHAGMDSQQRSANQDAFLMEKTDVIVATIAF 353
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E L
Sbjct: 354 GMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCVAFYANKDLQKLEKFL---- 409
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL----GC 427
Q E+ K + + Y E + CRRK +L FGE+ GC
Sbjct: 410 ----QGKPIVEQEIGKQL--LLETAAYAETAVCRRKVLLHYFGEEYFEENCGC 456
>gi|395801803|ref|ZP_10481058.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395435992|gb|EJG01931.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 731
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 244/401 (60%), Gaps = 25/401 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I ++L G++ F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVITSILDGKNTFVIMPTGGGKSLCYQLPALIQEGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEIAQVKKDITSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+ + ++ VAIDEAHCIS WGHDFRP YR L ++ L VPI+ LTATA
Sbjct: 127 EEYVAFLQSVP----ISFVAIDEAHCISEWGHDFRPEYRNLRNIIKQLGKVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMADANTFKASFNRPNLYYEVRTK--TKNIESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNS 382
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE 360
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
F+ ++V Y E S RRK +L FGE+
Sbjct: 361 IGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|408674061|ref|YP_006873809.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
gi|387855685|gb|AFK03782.1| ATP-dependent DNA helicase RecQ [Emticicia oligotrophica DSM 17448]
Length = 792
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/401 (40%), Positives = 245/401 (61%), Gaps = 20/401 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ L + L+ FG FR +Q I ++SG++ F +MPTG GKS+CYQ+PA+ G +
Sbjct: 7 QQTLKEKLKEIFGFDAFRGEQEPIIHNIVSGKNTFVIMPTGAGKSLCYQLPAMVLDGTAI 66
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLIALM+NQV + GI +FL+ST T++ D+ SG +LLY+ PE
Sbjct: 67 VISPLIALMKNQVDQMSAFGINAQFLNSTLNKSEMTRVKNDVMSG--DCKLLYIAPESLT 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ LKK L+ +A+DEAHCIS WGHDFRP YR++ + + + P++PI+ALTA
Sbjct: 125 KEDNLTFLKK----AKLSFIAVDEAHCISEWGHDFRPEYRRIRGIIDDIDPNLPIIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D+ ++L ++ + KSSFNR NL+YE+R K D+ L + N
Sbjct: 181 TATPKVQQDIQKNLSMEQSHIFKSSFNRKNLYYEIRPKI---DSKKQLIKYIANNKGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E++ L+ GI YHAGL+ R D +++ ++VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEEIAGLLNVNGIKALPYHAGLDADTRMKNQDAFLNEECDIIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++ PKS+E +YQE+GRAGRD L L++Y DD ++E K
Sbjct: 298 IDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCLMFYAYDDILKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ + ER + +++ +MV Y CRR+++L FGE
Sbjct: 350 NKDKTVTERDNARAL--LMEMVAYSNLGVCRRRQLLSYFGE 388
>gi|356528815|ref|XP_003532993.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max]
Length = 1160
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 242/403 (60%), Gaps = 17/403 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL +PGI LV+SPL++L+++
Sbjct: 406 FGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIRPGITLVISPLVSLIQD 465
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I +LS+ + +I +L+S +LLYVTPE A + + L
Sbjct: 466 QIMHLLQANIPAAYLSANMEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDN 525
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H R LL + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 526 LHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 585
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + K L+D + ++ N D C I+YCL R
Sbjct: 586 QALGLVNCIIFRQSFNRPNLWYSVVPKTKKCLED----IDKFIRVNHFDECGIIYCLSRM 641
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G CA YH ++ R+SV W ++ ATVAFGMGI++ DVR
Sbjct: 642 DCEKVAEKLQECGHKCAFYHGSMDPAQRASVQKQWSKDEINIICATVAFGMGINKPDVRF 701
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ +LS+ + S S
Sbjct: 702 VIHHSLPKSIEGYHQECGRAGRDGQRSSCILYYNYSDYIRVKHMLSQGAIEQSSMTSGYN 761
Query: 390 RSS--------KKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
RS+ + + + +MV YCE CRR L FGE+
Sbjct: 762 RSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEK 804
>gi|126662148|ref|ZP_01733147.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
gi|126625527|gb|EAZ96216.1| ATP-dependent DNA helicase recQ [Flavobacteria bacterium BAL38]
Length = 731
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/406 (42%), Positives = 245/406 (60%), Gaps = 25/406 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q ++++++G + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKKYFGFSQFKGLQEQVVKSIITGNNTFVIMPTGGGKSLCYQLPALVLDGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS ++ + +D+ SG +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSLSSEYGIAHVLNSSLNKTEI-ANVKKDITSG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ L + ++ VAIDEAHCIS WGHDFRP YR L ++ L DVP++ LTA
Sbjct: 125 TKEEYIEFLNSVP----ISFVAIDEAHCISEWGHDFRPEYRNLRNIVRLLGDVPMIGLTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K +
Sbjct: 181 TATPKVQEDILKNLDMPDANTFKASFNRPNLYYEVRTK--TKNIESDIIRFIKQHKGKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
++YCL R +E++ L GIS YHAGL+ K R+ D ++ +VVVAT+AFGMG
Sbjct: 239 VIYCLSRKKVEEIAQVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 299 IDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFLSGKPVAE 358
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
F+ ++V Y E S RRK +L FGE+ G
Sbjct: 359 QEIGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEEFDG 393
>gi|406866234|gb|EKD19274.1| QDE3-like protein [Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 1765
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/408 (42%), Positives = 249/408 (61%), Gaps = 21/408 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVV 84
+LR F FR Q+DAI A LSG+D F LMPTGGGKS+CYQ+PA+ G + LV+
Sbjct: 890 VLRERFKLKGFRRHQIDAINATLSGQDAFVLMPTGGGKSLCYQLPAVVNSGKTRGVTLVI 949
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPEL-T 141
SPL++LM +QV L K I L+S +VK+ I+ L P ++LLY+TPE+
Sbjct: 950 SPLLSLMNDQVQHLLVKKIQAATLNSDSPSEVKSDIWSALREENPEQYIQLLYITPEMIN 1009
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+P ++ L +++ +G L + IDEAHC+S WGHDFRP Y L LR+ P VP++ALTA
Sbjct: 1010 KSPPMIAALTRLYKKGKLARIVIDEAHCVSQWGHDFRPDYVALGRLRSDFPRVPLMALTA 1069
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY---KDLLDDAYADLCSVLKAN-G 257
TA V+ DVM +L ++ V SFNRPNL+YEVR K +L ++ +++
Sbjct: 1070 TATSNVKDDVMTNLGMKGCPVFTQSFNRPNLYYEVRLKRGKGVLAKMVTEIVELVRDTYK 1129
Query: 258 DTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y L + C++L+ L+ + YHAG+N + +++VL DW + + QVVVAT+
Sbjct: 1130 NQTGIIYALSQKGCEDLAQKLANEHNLRAYHYHAGMNREDKATVLQDWQTGKIQVVVATI 1189
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKS+E +YQE+GRAGRD S LY+G D ++ +
Sbjct: 1190 AFGMGIDKPDVRFVIHSSVPKSLEGYYQETGRAGRDGKRSGCYLYFGYQDTSTLKKFIED 1249
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
++ Q R+R+ K+ MV YCE + CRR ++L FGE+
Sbjct: 1250 SEGNEDQ--KNRQRNMLKN------MVGYCENRTDCRRSQVLRYFGEK 1289
>gi|293332763|ref|NP_001168975.1| uncharacterized protein LOC100382802 [Zea mays]
gi|223974195|gb|ACN31285.1| unknown [Zea mays]
Length = 710
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 237/401 (59%), Gaps = 24/401 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I AV+SGRD +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 85 FGISSYRSNQREIINAVMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST +V+ IY+ LD G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLSALGIPAYMLTSTTNKEVEKFIYKTLDKGEGELKILYVTPEKISKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L+AIDEAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D+M
Sbjct: 205 CHHAGRLSLIAIDEAHCCSQWGHDFRPDYKNLGILKIQFPSVPMIALTATATSKVQMDLM 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY+V K ++ D S N ++ I+YC R
Sbjct: 265 EMLHIPRCIKFVSTVNRPNLFYKVSEKSPVGKVVIDEITKFISESYPNNES-GIIYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ R + W + QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQVAKELRERGISADYYHADMDIVNREKIHMRWSKGKSQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQSKNSQSFST 387
V H ++ KSME +YQESGRAGRD LPS+ +LYY D R+ + +N
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILYYRPGDVPRQSSMVFYENC--------- 434
Query: 388 RERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLGC 427
+ + +V YC+ CR FGE C
Sbjct: 435 -------GLQNLYDIVRYCQSKRSCRHGAFFRHFGEVPQDC 468
>gi|399033938|ref|ZP_10732419.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398067770|gb|EJL59249.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 703
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 244/401 (60%), Gaps = 23/401 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG +FR Q I +LSG+D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 4 EILHAKLKENFGFEKFRPNQETIINTILSGQDTLAIMPTGGGKSICFQLPALVLPGITIV 63
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI+ +++S+Q+ + + E+L S + +L+Y+ PE
Sbjct: 64 ISPLIALMKDQVDSLKANGISACYINSSQSSEEQQFYIENLKSN--TFKLVYIAPES--- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L I + ++L+AIDEAHCISSWGHDFRP+Y L L++ P PILALTATA
Sbjct: 119 ---LSYLDVIFNELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATA 175
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ D+ + L L+NP +SF+R NL EVR D + ++ + I+
Sbjct: 176 DKATRTDITKQLNLKNPKTFVASFDRKNLSLEVRPAL---DRVKQIIDFVENKPNESGII 232
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T +EL+ L GI+ AYHAGL +K R+ D++I+ QVV AT+AFGMGID
Sbjct: 233 YCLSRKTTEELAEKLQKSGITAKAYHAGLENKLRAKTQDEFINDDCQVVCATIAFGMGID 292
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GRAGRD LP++++L+ D ++ Q
Sbjct: 293 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQL------------Q 340
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F++ +S ++ +M Y + CRRK +L FGE V
Sbjct: 341 KFASEGLNSDVQLAKLDRMKQYADALSCRRKILLSYFGELV 381
>gi|167765436|ref|ZP_02437549.1| hypothetical protein BACSTE_03826 [Bacteroides stercoris ATCC
43183]
gi|167697064|gb|EDS13643.1| ATP-dependent DNA helicase RecQ [Bacteroides stercoris ATCC 43183]
Length = 727
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMDGTAIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVEAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 390
>gi|270295711|ref|ZP_06201911.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
gi|270273115|gb|EFA18977.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D20]
Length = 727
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 243/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKKYFGFDTFKGNQEAIIENLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ SGK +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVRSDILSGKT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ +
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKALLHYFGEEYM 392
>gi|317475725|ref|ZP_07934984.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
gi|316908108|gb|EFV29803.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii 1_2_48FAA]
Length = 727
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 243/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ +
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEEYM 392
>gi|213982753|ref|NP_001135548.1| RecQ protein-like 5 [Xenopus (Silurana) tropicalis]
gi|195539645|gb|AAI68026.1| Unknown (protein for MGC:185094) [Xenopus (Silurana) tropicalis]
Length = 1050
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 185/443 (41%), Positives = 261/443 (58%), Gaps = 17/443 (3%)
Query: 30 LRWHFGHAQFR-DKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG FR D Q +A +AV+ G D F +MPTG GKS+CYQ+PA+ GI +V+SPL
Sbjct: 21 LKNVFGFNSFRSDLQENATRAVVKGETDVFVVMPTGAGKSLCYQLPAVLSVGITVVISPL 80
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+++QV L I L+S + + KI +DL+S P ++LLY+TPE+ A+ F
Sbjct: 81 IALIQDQVDHLVALKIKACSLNSKLPLPERKKIIQDLESEAPQIKLLYITPEMAASASFQ 140
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L ++ SR LL+ + IDEAHC+S WGHDFRP Y +L SLR+ +P P +ALTATA +V
Sbjct: 141 PILAQLLSRSLLSYLIIDEAHCVSEWGHDFRPDYLRLGSLRSRIPHTPCVALTATATKQV 200
Query: 208 QKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT------ 259
Q D++ SL L+ P+ + K+ R NLFY+V+ KDL+ D Y DL LKA G
Sbjct: 201 QDDIIASLKLRQPVSMFKTPCFRSNLFYDVQLKDLVGDPYGDLKEFCLKALGTKTPQGGF 260
Query: 260 --CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
C IVYC R C+E++ LS G+ YHAGL R ++ +DW+ V+VAT++
Sbjct: 261 PGCGIVYCRTRDACEEVAVQLSQRGVLSKPYHAGLKAGDRVTIQNDWMDGTVPVIVATIS 320
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMG+D+ +VR V H+NI KS+ +YQESGRAGRD + LYY DR ++ F++ K
Sbjct: 321 FGMGVDKANVRFVAHWNIAKSLAGYYQESGRAGRDGKQAFCRLYYSRTDRDQVGFLIRKE 380
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTH---- 433
++ + S K ++ F MV +CE +GCR I FG++ C S
Sbjct: 381 IAQAQAKRGDNKASDKAGMAGFDAMVSFCEDTGCRHAAIAAYFGDEKPQCNKSCDSCKNP 440
Query: 434 -RVVSFISPFILLISSSKTDTCI 455
V + L S ++ TCI
Sbjct: 441 LAVKRQVEQLEGLFQSGRSRTCI 463
>gi|218128449|ref|ZP_03457253.1| hypothetical protein BACEGG_00017 [Bacteroides eggerthii DSM 20697]
gi|217989340|gb|EEC55653.1| ATP-dependent DNA helicase RecQ [Bacteroides eggerthii DSM 20697]
Length = 727
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 243/404 (60%), Gaps = 23/404 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
Q E+ K + + Y E S CRRK +L FGE+ +
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEEYM 392
>gi|329957341|ref|ZP_08297861.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
gi|328523054|gb|EGF50157.1| ATP-dependent DNA helicase RecQ [Bacteroides clarus YIT 12056]
Length = 727
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 8 LTDQLKNYFGFDTFKGNQEAIIQNLLAGNDTFVLMPTGGGKSLCYQLPSLLMDGTAIVIS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +G+ +LLYV PE
Sbjct: 68 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKSAIDQVKSDILAGRT--KLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 125 TKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 180
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 181 TATPKVQHDIQKNLGMVEAQVFKSSFNRPNLYYEVRPKTANVDK--DIIKFIKNNPEKSG 238
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 239 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 298
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 299 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 350
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 351 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 390
>gi|326789234|ref|YP_004307055.1| ATP-dependent DNA helicase RecQ [Clostridium lentocellum DSM 5427]
gi|326539998|gb|ADZ81857.1| ATP-dependent DNA helicase RecQ [Clostridium lentocellum DSM 5427]
Length = 733
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 247/400 (61%), Gaps = 20/400 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ ++G+ FR Q + IQA+LSG+D +MPTGGGKS+CYQ+PAL G+ +V+SP
Sbjct: 4 LNILKKYYGYDAFRPGQEELIQAILSGKDALGIMPTGGGKSICYQVPALLLDGVTIVISP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV LKE GI E ++ST + + +I + G + +LLYV PE T F
Sbjct: 64 LISLMKDQVDTLKEYGIEAELINSTLSTKEFREIRANARMG--AYKLLYVAPERLETESF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA-LTATAAP 205
M ++++ +++VA+DEAHC+S WGHDFRPSYR++S + LP PI+A TATA P
Sbjct: 122 MDLIREVP----VSMVAVDEAHCVSQWGHDFRPSYRRVSQILYALPKRPIVAAFTATATP 177
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
V++D+++ L L P L SSF+RPNL++EVR + + + L+ + ++YC
Sbjct: 178 LVKEDIIKLLELNKPFELTSSFDRPNLYFEVRKPE---NKLHETEMYLREHVGESGVIYC 234
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D+L L G+ C YHAGL++ RSS DD++ R V++AT AFGMGID+
Sbjct: 235 ATRKGVDDLYERLLRLGLPCTKYHAGLSEAERSSNQDDFLYDRVSVMIATNAFGMGIDKP 294
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK+ME +YQE+GRAGRD ++ +L +G D +++ +N+
Sbjct: 295 NVRFVLHYNMPKNMEGYYQEAGRAGRDGEEAQCILLFGTQDIMTNRYLI-----ENANGL 349
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
+ K + MVDYC C R IL FG+Q L
Sbjct: 350 GRQIEYDK-----LNSMVDYCNTESCLRNYILNYFGQQTL 384
>gi|50557416|ref|XP_506116.1| YALI0F31977p [Yarrowia lipolytica]
gi|49651986|emb|CAG78930.1| YALI0F31977p [Yarrowia lipolytica CLIB122]
Length = 1300
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/413 (42%), Positives = 252/413 (61%), Gaps = 23/413 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG---- 79
+ + K+LR F +FR QL AI A L+G D LMPTGGGKS+CYQ+PAL G
Sbjct: 492 QEVYKVLRERFMLNEFRANQLHAINATLNGDDVLVLMPTGGGKSLCYQLPALVNGGKTRG 551
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +V+SPLI+LM++Q L K I+ +S+Q++Q + + L SG + LLYV+PE
Sbjct: 552 LSVVISPLISLMKDQTEALTAKNISCAMFNSSQSVQERKQSLAALSSG--DIALLYVSPE 609
Query: 140 LTATPGFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ M + L K+H + L + IDEAHC+SSWGHDFRP Y+ L ++++ LP VPI+A
Sbjct: 610 MFQQSNIMQNTLHKLHEQNRLARIVIDEAHCVSSWGHDFRPDYKALVNVKSRLPGVPIMA 669
Query: 199 LTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN- 256
LTATA KV+ D+ CL+ N K SFNRPNL+YEVR K + ++ +L+
Sbjct: 670 LTATANEKVRMDIQG--CLRPNRRFFKQSFNRPNLYYEVRLK--TKNFQQEITDMLRGRY 725
Query: 257 -GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
G T I+YC + C+ S +L GI YHAG+ + R+ V +W S + QVV AT
Sbjct: 726 RGQT-GIIYCHSKKLCETTSEFLKEAGIKADFYHAGMETEQRTYVQGNWQSGKIQVVCAT 784
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H +P++ME +YQE+GRAGRD LPSK ++Y+ D R+M F ++
Sbjct: 785 IAFGMGIDKADVRYVIHCTVPRNMEGYYQETGRAGRDGLPSKCIVYFSQKDARQMLFNIA 844
Query: 376 KNQ-----SKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
++ K + + R+R+ + + +++YCE CRR ++L F E
Sbjct: 845 NDEFLGENGKVDWALTQRQRTHHREL--MQGVINYCENRVDCRRVQVLRYFNE 895
>gi|154506622|ref|ZP_02043079.1| hypothetical protein RUMGNA_03889 [Ruminococcus gnavus ATCC 29149]
gi|153793375|gb|EDN75797.1| ATP-dependent DNA helicase RecQ [Ruminococcus gnavus ATCC 29149]
Length = 763
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 239/401 (59%), Gaps = 16/401 (3%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ +FG+ FR Q + I +L+GRD +MPTG GKS+CYQ+PAL GI +V+SP
Sbjct: 16 LQILKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISP 75
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM +QV L E GI +++S+ T K E +G+ +++YV PE TP F
Sbjct: 76 LISLMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGR--YKIVYVAPERLETPRF 133
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAP 205
+ +++V IDEAHCIS WG DFRPSY ++ S LP PI+ A TATA
Sbjct: 134 LD----FACHAEISMVTIDEAHCISQWGQDFRPSYVRIVSFIRQLPVRPIVTAFTATATK 189
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ D+ E L LQNP V + F+R NL++EV+ + + L+ + D I+YC
Sbjct: 190 RVQTDIREVLKLQNPYVAVTGFDRENLYFEVQ---RTKEKKERIREYLEKHSDESGIIYC 246
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DEL +L + G S YHAG+ ++AR S +D+I R QV++AT AFGMGID+
Sbjct: 247 ATRKNVDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKS 306
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+P+S+E +YQE+GRAGRD PS+ ++YY D +F+L +SK +
Sbjct: 307 NVRYVLHYNMPQSLENYYQEAGRAGRDSEPSECIIYYSPQDVVINQFLL---ESKENYGE 363
Query: 386 STRERSSKKSISD---FSQMVDYCEGSGCRRKKILESFGEQ 423
T E + D +M YC +GC R IL FGEQ
Sbjct: 364 YTAEEMQNIQVQDRERLQKMTTYCTTTGCLRNYILGYFGEQ 404
>gi|300721460|ref|YP_003710735.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
gi|297627952|emb|CBJ88501.1| ATP-dependent DNA helicase [Xenorhabdus nematophila ATCC 19061]
Length = 608
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 172/395 (43%), Positives = 239/395 (60%), Gaps = 22/395 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR FG+ QFR Q I AVL G DC +MPTGGGKS+CYQIPAL K G+ LVVSPLI+
Sbjct: 17 LRKTFGYQQFRPGQQQVIDAVLDGLDCLVVMPTGGGKSLCYQIPALVKDGLTLVVSPLIS 76
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L+ G+ E L+STQ+ + + I + G S++LLY+ PE T F+ +
Sbjct: 77 LMKDQVDQLRANGVEAECLNSTQSREQQFDIIQRCRQG--SIKLLYIAPERLVTDNFLEQ 134
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L ++A+DEAHCIS WGHDFRP YR L LR P++P++ALTATA ++
Sbjct: 135 LHDWRP----VVLAVDEAHCISQWGHDFRPEYRALGQLRRRFPNLPVIALTATADNTTRQ 190
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
D++ L L P++ SSF+RPN+ Y + +YK L L S ++A I+YC
Sbjct: 191 DIVRLLELHEPIIHLSSFDRPNIRYTLVEKYKPL-----DQLWSFVRAQQGKSGIIYCNS 245
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
RT +E + L G+S A YHAGL + R+ V D + Q+VVATVAFGMGI++ +V
Sbjct: 246 RTKVEETAERLQKRGLSVAPYHAGLENDQRAWVQDAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V HFNIP+++E++YQE+GRAGRD LP++++L+Y D + L + + Q
Sbjct: 306 RFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKPAGEQQDI-- 363
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 -ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|197120051|ref|YP_002140478.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
gi|197089411|gb|ACH40682.1| ATP-dependent DNA helicase RecQ [Geobacter bemidjiensis Bem]
Length = 599
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 242/398 (60%), Gaps = 18/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L FG FR Q + ++ VLSGRD F LMPTGGGKS+CYQ+PAL PG LV+SP
Sbjct: 6 IQILNDVFGFKSFRSPQQEIVETVLSGRDAFVLMPTGGGKSLCYQVPALCFPGTALVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E GI+ +S ++ L +G+ L+LLYV PE + GF
Sbjct: 66 LISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGE--LKLLYVAPERLLSDGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ ++K++ ++L AIDEAHC+S WGHDFRP Y +L LR P++P++ALTATA +
Sbjct: 124 LERIKQLP----ISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L LQ + F+RPN+ Y V K+ ++ L L + D IVY L
Sbjct: 180 TRGDILSRLGLQGATCYCAGFDRPNIRYSVIDKN---KPFSQLTGFLSSRKDEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A GI AAYHAGL DK R V D ++ ++VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAKKLCAAGIKAAAYHAGLPDKERHRVQDAFLKDDIKIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+++PKS+E++YQE+GRAGRD LP+ +LL +G D ++ +
Sbjct: 297 VRFVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDVAVARGLIGNGGNAE----- 351
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++ + + M+ + E CRR+ +L FG+++
Sbjct: 352 ----QNRIELHKLNCMIGFAEAQTCRRRVLLGYFGDRL 385
>gi|160940923|ref|ZP_02088263.1| hypothetical protein CLOBOL_05815 [Clostridium bolteae ATCC
BAA-613]
gi|158436167|gb|EDP13934.1| hypothetical protein CLOBOL_05815 [Clostridium bolteae ATCC
BAA-613]
Length = 822
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 243/396 (61%), Gaps = 8/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FRD Q IQ++L GRD +MPTG GKS+CYQIPAL GI LV+SPL
Sbjct: 6 EILKHYFGYDTFRDGQDVLIQSILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +++S+ T K+ + +G+ ++YV PE + F+
Sbjct: 66 ISLMKDQVSNLNQVGILAAYINSSLTAAQYYKVLDLARAGR--YPIIYVAPERLMSEDFL 123
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ S+ +++VA+DEAHC+S WG DFRPSY K+ N LP+ P++ A TATA +
Sbjct: 124 RF--ALSSQVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPERPVVSAFTATATAE 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+++ L L+NP V+ + FNRPNL++ V+ D YA + + L+ + I+YCL
Sbjct: 182 VRDDIIDILMLRNPQVMTTGFNRPNLYFGVQSPK---DKYATMVNYLERHKGESGIIYCL 238
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ L G S YHAGL+D R +D+I R Q++VAT AFGMGID+ +
Sbjct: 239 TRKVVEEVCGQLIREGFSVTRYHAGLSDSERRHNQEDFIYDRAQIMVATNAFGMGIDKSN 298
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK+ME++YQE+GRAGRD PS+ +L YG D +F + NQ +
Sbjct: 299 VRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPI 358
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
TRE ++ +M YC + C R IL FGE
Sbjct: 359 TREIVMERDRERLRKMTFYCFTNECLRDYILRYFGE 394
>gi|347536603|ref|YP_004844028.1| ATP-dependent DNA helicase RecQ [Flavobacterium branchiophilum
FL-15]
gi|345529761|emb|CCB69791.1| ATP-dependent DNA helicase RecQ3 [Flavobacterium branchiophilum
FL-15]
Length = 702
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/395 (42%), Positives = 243/395 (61%), Gaps = 23/395 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG FR Q IQ+VL+G+D +MPTGGGKS+C+Q+PAL G+ +VVSPLIA
Sbjct: 10 LKDHFGFENFRPNQEAIIQSVLNGQDTVAIMPTGGGKSICFQLPALIFQGLTIVVSPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV LK GI F++S+Q + E + +G +++L+YV PE ++
Sbjct: 70 LMKDQVDSLKANGINACFINSSQQAMEQHYYLEQIHNG--NIKLVYVAPES------LNY 121
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + + ++L+AIDEAHCIS+WGHDFRP+Y L L+N + PILALTATA ++
Sbjct: 122 LEPLFASIQVSLIAIDEAHCISAWGHDFRPAYCNLGYLKNKFANTPILALTATADKATRQ 181
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ + L LQNP V +SF+R NL EVR D + + D I+YCL R
Sbjct: 182 DICDQLNLQNPHVFVASFDRKNLSLEVRPAL---DRVKQIVQFIDKKADEAGIIYCLSRK 238
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
T +ELS L + GIS AYHAGL++ R+ V D +I+ QVV ATVAFGMGID+ +VR
Sbjct: 239 TTEELSEKLQSKGISAMAYHAGLDNHNRTKVQDAFINDTCQVVCATVAFGMGIDKSNVRW 298
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+N+PK++E +YQE GRAGRD P++++L+ D ++ Q F+
Sbjct: 299 VIHYNLPKNIEGYYQEIGRAGRDGQPAETILFQSYGDVIQL------------QKFALEA 346
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++++ ++ +M + + CRRK +L FGE V
Sbjct: 347 QNAEIQLAKLDRMKQFADAQSCRRKILLSYFGELV 381
>gi|436833691|ref|YP_007318907.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
gi|384065104|emb|CCG98314.1| ATP-dependent DNA helicase RecQ [Fibrella aestuarina BUZ 2]
Length = 742
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ FG +QFR Q I +L+G++ F +MPTG GKS+CYQ+PA+A G +V+
Sbjct: 11 TLKERLKEIFGFSQFRGDQETIIHNILAGKNTFVIMPTGAGKSLCYQLPAIASEGTAIVI 70
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM+NQV L GI +FL+ST + TK+ +D +G +L+LLY+ PE
Sbjct: 71 SPLIALMKNQVDQLNAFGINAQFLNSTLSKTEMTKVKKDTLNG--TLKLLYIAPESLTKE 128
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD------VPILA 198
+ LKK +++ VAIDEAHCIS WGHDFRP YRK+ + + + +P++A
Sbjct: 129 ENLDFLKK----AVISFVAIDEAHCISEWGHDFRPEYRKIRGIVDNIGHHSGRMGLPVIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+ ++L +++ V K+SFNR NL+YE++ K DA L +K N
Sbjct: 185 LTATATPKVQQDIQKNLNMEDADVFKTSFNRKNLYYEIKPKV---DAKKALIKYVKHNKG 241
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R T ++++ L + YHAGL+ + R + D +++ VV AT+AF
Sbjct: 242 KSGIVYCLSRKTAEDIAELLRVNDVRALPYHAGLDPQTRIANQDAFLNEEVDVVCATIAF 301
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++ PKS+E +YQE+GRAGRD L +++Y DD ++E
Sbjct: 302 GMGIDKPDVRFVIHYDAPKSLEGYYQETGRAGRDGLEGNCIMFYSYDDIVKLE------- 354
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ++ ER + K + +MV Y CRR+++L FGE
Sbjct: 355 -KFNKDKPVTERDNAKHL--LQEMVSYANLGVCRRRQLLGYFGE 395
>gi|305664748|ref|YP_003861035.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
gi|88707870|gb|EAR00109.1| ATP-dependent DNA helicase recQ [Maribacter sp. HTCC2170]
Length = 736
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 246/401 (61%), Gaps = 28/401 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q + ++ ++ G++ F +MPTGGGKS+CYQ+PAL + G ++VSPLIA
Sbjct: 17 LKKYFGFSQFKGLQEEVVKNIVQGKNTFVIMPTGGGKSLCYQLPALMQNGTAIIVSPLIA 76
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS +VK ++ ED+ +G +LLYV PE
Sbjct: 77 LMKNQVDAIRGISSEYGIAHVLNSSLNKTEVK-QVKEDITNG--ITKLLYVAPESLTKEV 133
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
++ LK S G+ + VA+DEAHCIS WGHDFRP YR L ++ L D +PI+ LTATA
Sbjct: 134 YIEFLK---SAGI-SFVAVDEAHCISEWGHDFRPEYRNLRTIVARLGDSIPIIGLTATAT 189
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + V K+SFNR NLFYEVR K D+ D+ +K N IVY
Sbjct: 190 PKVQEDIIKNLGITDAKVFKASFNRANLFYEVRTKTANVDS--DIIRFVKQNSGKSGIVY 247
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMGID+
Sbjct: 248 CLSRKRVEELAQVLQVNGVSAVPYHAGFDAKTRSKYQDMFLMEDVDVVVATIAFGMGIDK 307
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 308 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLE------------K 355
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I + ++V Y E S RRK +L FGE+
Sbjct: 356 FMSGKPVAEQEIGNALLQEVVAYAETSMSRRKFMLHYFGEE 396
>gi|295673364|ref|XP_002797228.1| ATP-dependent DNA helicase Q1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282600|gb|EEH38166.1| ATP-dependent DNA helicase Q1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1550
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/402 (43%), Positives = 240/402 (59%), Gaps = 22/402 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
FG + FR QL+AI A LSG+D F LMPTGGGKS+CYQ+PA+ G + +V+SPL++
Sbjct: 691 FGLSGFRLNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNSGTTKGVTVVISPLLS 750
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS----LRLLYVTPELTATPG 145
LME+QV LKE I L+ + + K+ IY L P+ ++LLYVTPE+ G
Sbjct: 751 LMEDQVAHLKELHIQAFLLNGDVSKEHKSLIYSAL--ANPNVEKLIQLLYVTPEMVNKNG 808
Query: 146 -FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L +HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA
Sbjct: 809 ALLGALSHLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFPGIPLMALTATAT 868
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+ DV+ +L ++N V SFNRPNL YEVR K + + + + I+
Sbjct: 869 ENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKPKNTNVIESIAETINESYSGQAGII 928
Query: 264 YCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YCL R +C++++A L I A YHAGL + R S+ DW S + V+VAT+AFGMGI
Sbjct: 929 YCLSRQSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKYNVIVATIAFGMGI 988
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H IPKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 989 DKADVRFVIHHTIPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTGPLRHMIDKGEG--- 1045
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
SF ++R + +V +CE S CRR +IL F E+
Sbjct: 1046 -SFEQKKRQRQM----LRHVVQFCENESDCRRVQILAYFNEK 1082
>gi|86143313|ref|ZP_01061715.1| ATP-dependent DNA helicase recQ [Leeuwenhoekiella blandensis
MED217]
gi|85830218|gb|EAQ48678.1| ATP-dependent DNA helicase recQ [Leeuwenhoekiella blandensis
MED217]
Length = 704
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 246/401 (61%), Gaps = 23/401 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+K L+ L+ +FG+ FR++Q I+ VL+G D +MPTGGGKS+CYQ+PA+ G+
Sbjct: 6 DKNTLLTTLKTYFGYDSFRNEQSAIIETVLNGEDAIVIMPTGGGKSICYQLPAVLFEGLT 65
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLIALM++QV GLK GIA +F +S+Q+ + + I + + L+LLYV PE
Sbjct: 66 LVISPLIALMKDQVDGLKANGIAADFYNSSQSAEDQQAIIDQV--ANRDLKLLYVAPE-- 121
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
++ L I ++ ++ +AIDEAHCISSWGHDFRPSY++L L+ LP +P++ALTA
Sbjct: 122 ----SLAGLNPILNKTYISCIAIDEAHCISSWGHDFRPSYQQLGFLKKSLPQIPMIALTA 177
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA ++D+ L + + SSF+R N+ EVR D D + L+ DT
Sbjct: 178 TADKATREDIANQLNISHAKQFISSFDRKNITLEVRAADKRLD---QIKRFLEKRPDTSG 234
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R T + +S L+A GI YHAGL+ R+ V +D+I + QVV ATVAFGMG
Sbjct: 235 IIYCLSRKTTESVSTSLAAEGIKATCYHAGLSFDERNKVQEDFIYDKTQVVCATVAFGMG 294
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ +VR V H+N+PK++E +YQE GRAGRD L S +LL++ D ++ +
Sbjct: 295 IDKSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLKSHALLFHSYADVLQLR--------RF 346
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+Q E + K +M Y E + CRRK +L FGE
Sbjct: 347 TQGAGNEEVQNAK----LDRMKQYAEATTCRRKILLSYFGE 383
>gi|336434030|ref|ZP_08613835.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336014617|gb|EGN44457.1| hypothetical protein HMPREF0991_02954 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 753
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 239/401 (59%), Gaps = 16/401 (3%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ +FG+ FR Q + I +L+GRD +MPTG GKS+CYQ+PAL GI +V+SP
Sbjct: 6 LQILKTYFGYDSFRPGQEEIIDQILAGRDALAIMPTGAGKSLCYQVPALMMRGITIVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM +QV L E GI +++S+ T K E +G+ +++YV PE TP F
Sbjct: 66 LISLMMDQVKALNEAGIHAAYINSSLTENQVAKALEFAKAGR--YKIVYVAPERLETPRF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAP 205
+ +++V IDEAHCIS WG DFRPSY ++ S LP PI+ A TATA
Sbjct: 124 LD----FACHAEISMVTIDEAHCISQWGQDFRPSYVRIVSFIRQLPVRPIVTAFTATATK 179
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+VQ D+ E L LQNP V + F+R NL++EV+ + + L+ + D I+YC
Sbjct: 180 RVQTDIREVLKLQNPYVAVTGFDRENLYFEVQ---RTKEKKERIREYLEKHSDESGIIYC 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DEL +L + G S YHAG+ ++AR S +D+I R QV++AT AFGMGID+
Sbjct: 237 ATRKNVDELYLFLESAGFSVGRYHAGMGNEARKSSQEDFIYDRIQVMIATNAFGMGIDKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+P+S+E +YQE+GRAGRD PS+ ++YY D +F+L +SK +
Sbjct: 297 NVRYVLHYNMPQSLENYYQEAGRAGRDSEPSECIIYYSPQDVVINQFLL---ESKENYGE 353
Query: 386 STRERSSKKSISD---FSQMVDYCEGSGCRRKKILESFGEQ 423
T E + D +M YC +GC R IL FGEQ
Sbjct: 354 YTAEEMQNIQVQDRERLQKMTTYCTTTGCLRNYILGYFGEQ 394
>gi|365119359|ref|ZP_09337481.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
gi|363648680|gb|EHL87834.1| ATP-dependent DNA helicase RecQ [Tannerella sp. 6_1_58FAA_CT1]
Length = 709
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 241/400 (60%), Gaps = 23/400 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ ++G+ FR +Q + I ++SGRDC LMPTGGGKS+CYQIPA+ K G +VVSP
Sbjct: 9 LQILKKYYGYDTFRLQQAEIIDTIISGRDCLVLMPTGGGKSLCYQIPAIIKGGTTVVVSP 68
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
L+ALM++QV L GI L+S Q T VK KI + + LRLLY++PE
Sbjct: 69 LLALMKDQVDTLDSNGIPAAMLNSLQNETETVKVKI----AARRGDLRLLYISPE----- 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
M ++ + ++L AIDEAHCIS WGHDFRP Y +LS L+ Y P VP++ALTATA
Sbjct: 120 RLMGEIDGLLREMNISLFAIDEAHCISQWGHDFRPEYNRLSVLKKYFPKVPLMALTATAD 179
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D++ L + NP V SSF+RPNL VR + + S ++ + I+Y
Sbjct: 180 KLTREDIVTQLAMDNPQVFISSFDRPNLTLSVRKNLNKKQKLSAILSFIEQHPRQSGIIY 239
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R + + L LS GIS AYHAGL+ + R + +++ R Q++ AT+AFGMGID+
Sbjct: 240 CMSRNSTEILVRELSQYGISVTAYHAGLSSRERETAQQAFLNDRVQIICATIAFGMGIDK 299
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E +YQE GRAGRD + +LL+Y + D +LSK
Sbjct: 300 SNVRWVIHYNMPKSIECYYQEIGRAGRDGMKGDTLLFYSLGD----VVMLSK-------- 347
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F+ K ++ +M Y E CRR+ +L FGE V
Sbjct: 348 FAEESGQKKINLEKLRRMQQYAESPICRRRILLSYFGETV 387
>gi|195501810|ref|XP_002097953.1| GE10090 [Drosophila yakuba]
gi|194184054|gb|EDW97665.1| GE10090 [Drosophila yakuba]
Length = 1490
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 241/404 (59%), Gaps = 17/404 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 728 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 787
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 788 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 847
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 848 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 907
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKAN-GDTC 260
P+V+ D++ L L+N SSFNR NL Y V K LDD + +++
Sbjct: 908 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYMVLPKKGTSTLDD----ISRYIRSKPAHFS 963
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R CDE S + G+ AYHAGL D R DW++ + +V+ AT+AFGM
Sbjct: 964 GIIYCLSRKECDETSKKMCKDGVRSVAYHAGLTDSEREGRQKDWLTGKIRVICATIAFGM 1023
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD ++ +LYY D R++ ++ ++
Sbjct: 1024 GIDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVAECILYYNYADMLRLKKMMDSDK-- 1081
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K + + ++V YCE + CRR + L+ FGE
Sbjct: 1082 -----ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEH 1120
>gi|321476989|gb|EFX87948.1| DNA helicase RecQ5 [Daphnia pulex]
Length = 997
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 166/419 (39%), Positives = 248/419 (59%), Gaps = 15/419 (3%)
Query: 24 EALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPG-I 80
E ++K L FGH F+ Q DA+ AV+ G D F MPTG GKS+CYQ+PA+ K +
Sbjct: 7 ETVLKTLEDKFGHTDFKSTLQKDAVLAVVQGSGDVFVSMPTGSGKSLCYQLPAVIKERCV 66
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPL+AL+ +Q+ L ++ I E ++S ++ K ++ DL + P+ +LLY+TPE
Sbjct: 67 AIVVSPLLALITDQIEHLLKRKIVAETINSKMLVEDKRRVCNDLKTKCPNTQLLYITPEQ 126
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
AT F L +H ++ +DEAHC+S WGHDFRP Y KL LR D+P +ALT
Sbjct: 127 AATSTFQEILAHLHKHKQISYFVVDEAHCVSQWGHDFRPDYLKLGKLREKYMDIPCIALT 186
Query: 201 ATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLC----SVLKA 255
ATA +V+KD+ E L L++P+ K+S R NLFY++ +++ D DL L
Sbjct: 187 ATATAQVEKDIYEQLSLKSPVARFKTSCFRSNLFYDIAFQNTSADPETDLSLYASEWLGD 246
Query: 256 NGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
+ DT C I+YC R + L+ L+ GI AYHAGL D+ R+ V D+W++ +
Sbjct: 247 DWDTQPLKTRPCGIIYCRTRESTGTLAEILTKKGIHTKAYHAGLKDRERAEVQDEWMTGK 306
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
V+ AT++FGMG+D+ VR V H+ +P+S+ +YQESGRAGRD PS ++Y +R
Sbjct: 307 IPVITATISFGMGVDKASVRFVAHWCMPQSVAGYYQESGRAGRDGQPSGCRIFYSRKERN 366
Query: 369 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+EF+L ++ SK ++ + E+ +K+ + + MV YCE CR FG+ C
Sbjct: 367 AVEFLLKQDVSKKTKKGAKYEKQAKQMMKSYEAMVRYCEIPQCRHAIFSSYFGDSPPDC 425
>gi|409098551|ref|ZP_11218575.1| ATP-dependent DNA helicase RecQ [Pedobacter agri PB92]
Length = 729
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 175/411 (42%), Positives = 242/411 (58%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L L+ FG F+ Q I +L G + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 KKSLFDNLQNFFGFDNFKGDQESIITNILEGNNTFVIMPTGGGKSICYQLPALMSEGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ T++ DL SG+ +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGNDSIAHFLNSSLNKSEITQVKSDLLSGQT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
A + L I ++ VA+DEAHCIS WGHDFRP YRK+ + L ++PI+A
Sbjct: 122 SLAKQDNIEFLNLIK----ISFVAVDEAHCISEWGHDFRPEYRKIKQVIAGLGNNIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D+M++L + + KSSFNRPNLFYE+R K D ++ +K+N
Sbjct: 178 LTATATPKVQQDIMKNLGMTEATLFKSSFNRPNLFYEIRPKR---DITKEIIKYIKSNPG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GIS YHAGL K R+ D ++ +V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEVAEALNLNGISALPYHAGLEPKVRAETQDKFLMEDAEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRFVIHHDVPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYAESGVCRRKQILHYFGENFNETGC 395
>gi|53715360|ref|YP_101352.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|60683329|ref|YP_213473.1| ATP-dependent DNA helicase [Bacteroides fragilis NCTC 9343]
gi|265767847|ref|ZP_06095379.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|336412096|ref|ZP_08592554.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|375360137|ref|YP_005112909.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|383119914|ref|ZP_09940651.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|423252209|ref|ZP_17233211.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|423252529|ref|ZP_17233460.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|423261243|ref|ZP_17242144.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|423267768|ref|ZP_17246748.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|423272323|ref|ZP_17251291.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|423276779|ref|ZP_17255711.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|423283055|ref|ZP_17261940.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
gi|52218225|dbj|BAD50818.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis YCH46]
gi|60494763|emb|CAH09569.1| putative ATP-dependent DNA helicase [Bacteroides fragilis NCTC
9343]
gi|251944080|gb|EES84599.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_2_5]
gi|263252519|gb|EEZ24047.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|301164818|emb|CBW24378.1| putative ATP-dependent DNA helicase [Bacteroides fragilis 638R]
gi|335939268|gb|EGN01145.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_56FAA]
gi|387774395|gb|EIK36507.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T00C01]
gi|392647821|gb|EIY41518.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T00C08]
gi|392660605|gb|EIY54214.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL03T12C07]
gi|392695515|gb|EIY88727.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T00C42]
gi|392695991|gb|EIY89195.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL05T12C13]
gi|392696027|gb|EIY89229.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis CL07T12C05]
gi|404581329|gb|EKA86028.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 615]
Length = 726
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K + D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPK--TQNVDKDIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|393789452|ref|ZP_10377573.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
gi|392650900|gb|EIY44566.1| ATP-dependent DNA helicase RecQ [Bacteroides nordii CL02T12C05]
Length = 726
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 171/402 (42%), Positives = 243/402 (60%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q IQ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKQYFGFDKFKGNQEAIIQNLLNGGDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLNKGAIDQVKSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ ++ N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRPKTTNIDR--DIIKFIRNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD K + +Y D +++E K
Sbjct: 298 IDKPDVRYVMHYDIPKSLEGYYQETGRAGRDGGEGKCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|343429696|emb|CBQ73268.1| related to SGS1-DNA helicase [Sporisorium reilianum SRZ2]
Length = 1258
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/405 (45%), Positives = 243/405 (60%), Gaps = 17/405 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGI 80
+V LR +F +FR QL+AI L GRD F LMPTGGGKS+CYQ+PA AK G+
Sbjct: 338 VVYALRRYFKLRRFRHNQLEAINGTLMGRDVFVLMPTGGGKSLCYQLPACIDTENAK-GL 396
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+V+SPLI+L+ +QV L K IA ++ K + + K SLRLLY+TPE
Sbjct: 397 TIVISPLISLINDQVRHLTLKEIAAASITGDTNPADKRLVMDLARETKSSLRLLYLTPEF 456
Query: 141 TAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
T P L +++SR L +DEAHC+S WGHDFRP Y +L +LR P VPI+AL
Sbjct: 457 IRTSPQAQLLLDELYSRKQLARFVVDEAHCVSQWGHDFRPHYTELGALRKQYPTVPIMAL 516
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS-VLKANGD 258
TATA +V KDV L ++N L L SSFNRPNL Y+VR K A D+ S +L ++ D
Sbjct: 517 TATANARVVKDVEACLQMKNVLQLSSSFNRPNLEYQVRSKPR-SKAVDDIASFILASHKD 575
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYCL R TC+ ++A L GIS YHA L R+ V D W S+ +V+VAT+AF
Sbjct: 576 ECGIVYCLSRETCETVAADLIKHGISAHHYHARLQKDDRAMVQDKWQSNEFKVIVATIAF 635
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQE+GRAGRD S +LYY D ++E ++ +
Sbjct: 636 GMGIDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGKSSACILYYSYGDVLKIEKMVRGEE 695
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
K+ + +S+ M +CE CRR ++L FGE
Sbjct: 696 DKSQDAID-------RSLDSLRMMQMFCENVIECRRVQVLRYFGE 733
>gi|37528437|ref|NP_931782.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36787875|emb|CAE16992.1| ATP-dependent DNA helicase RecQ [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 608
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/397 (42%), Positives = 238/397 (59%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I +L GRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLRKTFGYLQFRSGQQQVIDTILEGRDCLVIMPTGGGKSLCYQIPALVQEGVTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A + L+STQ + + + G ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLRANGVAADCLNSTQAREQQIDVIRRCRQG--MIKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++A+DEAHCIS WGHDFRP YR L LR P +P++ALTATA
Sbjct: 133 EQLLEWQP----AMLAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L NPL+ SSF+RPN+ Y + +YK L L ++ IVYC
Sbjct: 189 RNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKPL-----DQLWLFIRGQKGKSGIVYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R+ +E+S L G+S A YHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRSRVEEISERLQKRGLSVAPYHAGLDNSQRARVQDAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HFNIP+++E++YQE+GRAGRD LP++++L+Y D + L + + Q
Sbjct: 304 NVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKEVGTQQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|146300558|ref|YP_001195149.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146154976|gb|ABQ05830.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
Length = 705
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 244/401 (60%), Gaps = 23/401 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG +FR Q I VLSG D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 4 ELLHAKLKENFGFEKFRPNQETIITTVLSGNDALAIMPTGGGKSICFQLPALVLPGITIV 63
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI+ +++S+Q+ + + ++L + + +L+Y+ PE
Sbjct: 64 ISPLIALMKDQVDSLKSNGISACYINSSQSSEEQQYYIDNLKTN--TFKLVYIAPES--- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L I S ++L+AIDEAHCISSWGHDFRP+Y L L+N P P+LALTATA
Sbjct: 119 ---LSYLDTIFSELTISLIAIDEAHCISSWGHDFRPAYTNLGYLKNRFPSTPVLALTATA 175
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ D+ + L L+NP +SF+R NL EVR D + ++ + I+
Sbjct: 176 DKATRVDITKQLNLKNPKTFVASFDRKNLSLEVR---PALDRVKQIIDFVENKPNESGII 232
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R T +EL+ L+ GI+ AYHAGL++ R+ D++I+ QVV AT+AFGMGID
Sbjct: 233 YCLSRKTTEELAEKLAKNGIAAKAYHAGLDNTTRAKTQDEFINDDCQVVCATIAFGMGID 292
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GRAGRD LP++++L+ D ++ Q
Sbjct: 293 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQL------------Q 340
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F++ ++ ++ +M Y + CRRK +L FGE V
Sbjct: 341 KFASDGLNADVQLAKLDRMKQYADAVSCRRKILLSYFGELV 381
>gi|383810866|ref|ZP_09966350.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 306 str.
F0472]
gi|383356505|gb|EID34005.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 306 str.
F0472]
Length = 727
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 241/401 (60%), Gaps = 19/401 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+++FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKYYFGFEKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ K+ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDKVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTAT
Sbjct: 125 KEENMAFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRYAIDTIGAAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIIRSLGIEDCAEFKSSFNRPNLYYEVRAKRSDDDTSKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y +D +++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKNDLKKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 353 EGKPVAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEE 391
>gi|225681066|gb|EEH19350.1| ATP-dependent DNA helicase hus2/rqh1 [Paracoccidioides brasiliensis
Pb03]
Length = 1550
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 174/402 (43%), Positives = 240/402 (59%), Gaps = 22/402 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
FG + FR QL+AI A LSG+D F LMPTGGGKS+CYQ+PA+ G + +V+SPL++
Sbjct: 692 FGLSGFRLNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPAVVNSGTTKGVTVVISPLLS 751
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS----LRLLYVTPELTATPG 145
LME+QV LKE I L+ + K+ IY L P+ ++LLYVTPE+ G
Sbjct: 752 LMEDQVAHLKELHIQAFLLNGDVNKEHKSLIYSAL--ANPNVEKLIQLLYVTPEMVNKNG 809
Query: 146 -FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L ++HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA
Sbjct: 810 ALLGALSRLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFPGIPLMALTATAT 869
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+ DV+ +L ++N V SFNRPNL YEVR K + + + + I+
Sbjct: 870 ENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKPKNTNVIESIAETINESYSGQAGII 929
Query: 264 YCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YCL R +C++++A L I A YHAGL + R S+ DW S + V+VAT+AFGMGI
Sbjct: 930 YCLSRRSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKYNVIVATIAFGMGI 989
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H +PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 990 DKADVRFVIHHTMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTGPLRHMIDKGEG--- 1046
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
SF ++R + +V +CE S CRR +IL F E+
Sbjct: 1047 -SFEQKKRQRQM----LRHVVQFCENESDCRRVQILAYFNEK 1083
>gi|408379129|ref|ZP_11176723.1| ATP-dependent DNA helicase RecQ [Agrobacterium albertimagni AOL15]
gi|407746613|gb|EKF58135.1| ATP-dependent DNA helicase RecQ [Agrobacterium albertimagni AOL15]
Length = 618
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/410 (42%), Positives = 244/410 (59%), Gaps = 26/410 (6%)
Query: 19 PLHEKEAL---VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
PL AL + +L+ +G++ FR +Q + + V+SG D L PTG GKS+C+Q+PAL
Sbjct: 9 PLFSHPALDGPLSVLKRIYGYSAFRGRQAEVVSHVVSGGDAVVLFPTGAGKSLCFQVPAL 68
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+PG+ +VVSPLIALM +QV LK G+ L+ST + + +I LD G+ L LY
Sbjct: 69 CRPGVGVVVSPLIALMRDQVEALKGLGVKAAALNSTLSREEYVEIRRALDRGE--LDFLY 126
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
VTPE TATPGF+ ++ + + L AIDEAHC+S WGHDFRP YR+L L + P VP
Sbjct: 127 VTPERTATPGFIEMMQGVE----IALFAIDEAHCVSQWGHDFRPEYRELGKLADLFPGVP 182
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
LALTATA P ++D++ L L V +SF+RPN+ YE+ +D L L
Sbjct: 183 RLALTATADPHTREDIIARLRLDEAQVFTTSFDRPNIAYEIVERD---QPRQQLLRFLSR 239
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ + IVYCL R +E++++L GI YHAG++ R + D ++ +VAT
Sbjct: 240 HKGSSGIVYCLSRAKVEEIASWLDDQGIRALPYHAGMDRAIRDANQDAFLKEEDLCLVAT 299
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEF 372
VAFGMGID+ +VR V H ++P S+EA+YQE+GRAGRD LPS+ + YGM D R RM
Sbjct: 300 VAFGMGIDKPNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMADVIQRGRM-- 357
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ + ER+ + ++ CE GCRR+ IL+ FGE
Sbjct: 358 ---IDEGGAADDIKRVERAK------LNALLAICETPGCRRQAILKHFGE 398
>gi|422021069|ref|ZP_16367583.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
gi|414099974|gb|EKT61607.1| ATP-dependent DNA helicase RecQ [Providencia sneebia DSM 19967]
Length = 608
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/391 (43%), Positives = 239/391 (61%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I+A+L RDC LMPTGGGKS+CYQ+PAL K GI LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQEAVIRAILDNRDCLVLMPTGGGKSLCYQVPALVKDGITLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ L+S+QT + ++ + GK ++LLYV PE T F+S L
Sbjct: 81 QVDQLQLHGVNAACLNSSQTALEQREVMDACSQGK--IKLLYVAPERLLTDYFLSHL--- 135
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S + L A+DEAHCIS WGHDFRP YR + LR + PDVP++ALTATA + D++
Sbjct: 136 -SNWNVALFAVDEAHCISQWGHDFRPEYRGMGQLRQHFPDVPVMALTATADETTRADIIR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L LQ+PL+ SSF+RPN+ Y + +YK L L +KA IVYC R
Sbjct: 195 RLDLQDPLIQISSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKAGIVYCNSRNKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G++ AYHAGL+++ R V D ++ Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLKKRGLTVEAYHAGLDNQQREWVQDAFLKDNIQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMHQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|344248551|gb|EGW04655.1| ATP-dependent DNA helicase Q5 [Cricetulus griseus]
Length = 409
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/375 (44%), Positives = 237/375 (63%), Gaps = 12/375 (3%)
Query: 47 IQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105
I+ +SG +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+++QV L +
Sbjct: 21 IKTAMSGDKDVFVCMPTGAGKSLCYQLPALLAKGITIVVSPLIALIQDQVDHLLALKVQV 80
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165
L+S ++Q + ++ DL+ KP +LLY+TPE+ A+ F L + SR LL+ + +D
Sbjct: 81 SSLNSKLSVQERKQLLSDLERDKPRTKLLYITPEMAASASFQPTLNSLMSRNLLSYLVVD 140
Query: 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LK 224
EAHC+S WGHDFRP Y +L +LR+ L P +ALTATA P+VQ+DV SL L+ P+ K
Sbjct: 141 EAHCVSQWGHDFRPDYLRLGALRSRLAHAPCVALTATATPQVQEDVFASLHLKQPVASFK 200
Query: 225 SSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CAIVYCLERTTCDELS 275
+ R NLFY+V++K+L+ D Y +L LKA G C IVYC R C++++
Sbjct: 201 TPCFRANLFYDVQFKELIPDLYGNLRDFCLKALGQKADKGLLSGCGIVYCRTREACEQVA 260
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
LS+ G++ AYHAGL R+ V ++W+ + V+VAT++FGMG+D+ +VR V H+NI
Sbjct: 261 VELSSRGVNAKAYHAGLKAPDRTQVQNEWMEEKVPVIVATISFGMGVDKANVRFVAHWNI 320
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395
KSM +YQESGRAGRD PS LYY DR ++ F++ K K + ++ S K +
Sbjct: 321 AKSMAGYYQESGRAGRDGKPSWCRLYYSRSDRDQVSFLIRKEIDKLQEKRGSKP-SDKAT 379
Query: 396 ISDFSQMVDYCEGSG 410
+ F +V +CE G
Sbjct: 380 LLAFDALVTFCEELG 394
>gi|397781462|ref|YP_006545935.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396939964|emb|CCJ37219.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 417
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 238/396 (60%), Gaps = 17/396 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FGH FR Q + IQ + GRD ++ TGGGKS+CYQ+PAL G+ LV+SPLI
Sbjct: 7 ILQRYFGHTAFRPYQQEIIQDLREGRDVLAVLATGGGKSLCYQVPALIGNGVTLVISPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L+ +GI+ E L+S+ + +I +L+ +++LYV+PE + F++
Sbjct: 67 ALMKDQVDDLQARGISAEALNSSCSYVATRRILSELEEN--VVQILYVSPEKAVSDDFLA 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + + L+A+DEAHCIS WGH FRP YR L L+ P VP++ALTATA P V+
Sbjct: 125 LIASLP----ITLIAVDEAHCISMWGHQFRPEYRSLQVLKERFPQVPMVALTATATPDVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ L L NP V SFNR NL Y V K+ +D Y L L+ I+Y R
Sbjct: 181 DDIARQLNLNNPSVYVGSFNRENLRYLVVQKE--EDVYERLRGYLQGRRTDAGIIYTATR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ L+A L A GI YHAG+ AR D +++ + V+ AT AFGMGID+ DVR
Sbjct: 239 DGAETLAARLQADGIPALPYHAGMTAAARERTHDRFMTGKVPVICATSAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PK++EA+YQESGRAGRD S +L+Y DD +R+ + ++ Q R
Sbjct: 299 FVVHYDMPKTLEAYYQESGRAGRDGGESDCILFYHDDDAKRLRSFIDRDLPSEFQREVAR 358
Query: 389 ERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
S +MVDYC +GCRR++ILE FGE+
Sbjct: 359 --------SKLQKMVDYCSIAAGCRRRQILEYFGER 386
>gi|429741035|ref|ZP_19274704.1| ATP-dependent DNA helicase RecQ [Porphyromonas catoniae F0037]
gi|429159704|gb|EKY02201.1| ATP-dependent DNA helicase RecQ [Porphyromonas catoniae F0037]
Length = 725
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 241/401 (60%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG QF+ Q + I+ L GRD F LMPTGGGKS+CYQ+PAL G +++S
Sbjct: 6 LPRALKEYFGFDQFKGNQREIIEQTLQGRDTFVLMPTGGGKSLCYQLPALLMDGTAVIIS 65
Query: 86 PLIALMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV ++ E+ FL+S+ + ++ +D+ +G+ +LLYV PE
Sbjct: 66 PLIALMKNQVDAVRGFCEEDTVAHFLNSSLSRAKLEEVKQDVRAGRT--KLLYVAPESLH 123
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L+++ ++ A+DEAHCIS WGHDFRP YRK+ SL + + PI+ALTAT
Sbjct: 124 KQENIDLLREVP----ISFYAVDEAHCISEWGHDFRPEYRKIRSLVSEIAPRPIMALTAT 179
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A PKVQ D+M++L +++ +V +SSFNRPNL Y++R K D D+ + AN I
Sbjct: 180 ATPKVQHDIMKNLGIEDAVVFQSSFNRPNLLYQIRPKTA--DVDRDIVRYILANPKKSGI 237
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYC+ RT + L+ L A GI YHAGL K R D +I R V+VAT+AFGMGI
Sbjct: 238 VYCMRRTRVETLAQVLQANGIKALPYHAGLEAKERMENQDAFIEERVDVIVATIAFGMGI 297
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+++PKS+E +YQE+GRAGRD + YY ++ ++E +K +S
Sbjct: 298 DKPDVRYVIHYDMPKSLEGYYQETGRAGRDGGEGVCIAYYDPNELEKLER-FTKGRSVAD 356
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q + + DY E + CRR +L FGE
Sbjct: 357 QEIAR---------VLLRETADYAETTLCRRSFLLNYFGEH 388
>gi|71017581|ref|XP_759021.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
gi|46098743|gb|EAK83976.1| hypothetical protein UM02874.1 [Ustilago maydis 521]
Length = 1291
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 178/403 (44%), Positives = 242/403 (60%), Gaps = 20/403 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVV 84
+L+ F +FR QL+AI LSGRD F LMPTGGGKS+CYQ+PA G+ +V+
Sbjct: 406 VLKKFFKLKRFRRNQLEAINGTLSGRDVFVLMPTGGGKSLCYQLPACIDTDKATGVSIVI 465
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTAT 143
SPL++L+E+QV+ L K + L+ + + + SLRLLYVTPE + +
Sbjct: 466 SPLLSLIEDQVLDLVRKDVPAVKLTGDMSANDRRDAFNTARDRVGSLRLLYVTPEFIRQS 525
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
M L ++S+ L + +DEAHC+S WGHDFRP Y +L +LR+ P VPI+ALTATA
Sbjct: 526 NQAMELLDLLYSQKRLARIVVDEAHCVSQWGHDFRPHYTELGALRDKYPQVPIMALTATA 585
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKANGDTCA 261
+V KDV L ++N L L SSFNRPNL Y+VR K L D A +L ++ D C
Sbjct: 586 NARVIKDVKSCLKMRNVLQLSSSFNRPNLEYQVRKKPKSKLIDEIASF--ILTSHKDECG 643
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R +C+ ++ L GI+ YHA L RS V W + +V+VAT+AFGMG
Sbjct: 644 IVYCFSRESCETVADDLKKHGITAHHYHAKLGKDDRSKVQQRWKNGEYKVIVATIAFGMG 703
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
ID+ DVR V H ++PKS+E +YQE+GRAGRD L S +LYY D RRME +LS+ +S
Sbjct: 704 IDKPDVRFVIHHSLPKSLEGYYQETGRAGRDGLDSVCILYYSWTDVRRMENMMLSEEKS- 762
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ + +SI +M +CE CRR ++L FGE
Sbjct: 763 --------QEAIDRSIDSLREMQRFCENEIECRRVQVLRYFGE 797
>gi|423066192|ref|ZP_17054982.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
gi|406712234|gb|EKD07423.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis C1]
Length = 739
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/408 (39%), Positives = 249/408 (61%), Gaps = 13/408 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PL + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KP
Sbjct: 7 PLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ LVVSPLIALM++QV LK+ GI FL+ST + + + G+ ++LLYV P
Sbjct: 67 GLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQ--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L ++ + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLDFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D+++ + L+ P V +SF R NL+Y+V K + L V+++
Sbjct: 185 LTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQP-KKRFPQLLKVIESMSG 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 S-GIIYCSSRKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q++DY E + CR + L FGE+ G
Sbjct: 363 DVDEQRIARQQ---------LRQVIDYAESTECRHRIQLRYFGEEFPG 401
>gi|209527293|ref|ZP_03275803.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
gi|209492281|gb|EDZ92626.1| ATP-dependent DNA helicase RecQ [Arthrospira maxima CS-328]
Length = 739
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/408 (39%), Positives = 249/408 (61%), Gaps = 13/408 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PL + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KP
Sbjct: 7 PLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ LVVSPLIALM++QV LK+ GI FL+ST + + + G+ ++LLYV P
Sbjct: 67 GLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQ--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L ++ + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLEFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D+++ + L+ P V +SF R NL+Y+V K + L V+++
Sbjct: 185 LTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQP-KKRFPQLLKVIESMSG 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 S-GIIYCSSRKRVEEVALKLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q++DY E + CR + L FGE+ G
Sbjct: 363 DVDEQRIARQQ---------LRQVIDYAESTECRHRIQLRYFGEEFPG 401
>gi|357441847|ref|XP_003591201.1| Bloom syndrome protein-like protein [Medicago truncatula]
gi|355480249|gb|AES61452.1| Bloom syndrome protein-like protein [Medicago truncatula]
Length = 603
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/395 (43%), Positives = 239/395 (60%), Gaps = 16/395 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ R Q A +A L+ +D F LMPTGGGKS+CYQ+PA +PG+ +VVSPL++L+++
Sbjct: 197 FGNKSLRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQD 256
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S Q + ++L KPS +LLYVTPE + F+ LK
Sbjct: 257 QIITLNLKFGIPATFLNSQQNASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFVGILK 316
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR L SL+ P VP++ALTATA V++D+
Sbjct: 317 CMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQNFPRVPVMALTATATHPVREDI 376
Query: 212 MESLCLQNPLVLKSSFNRPNLFYE--VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
+ +L + + +VL+ SF+RPNL YE V+ K+ L L K+ C IVYCL ++
Sbjct: 377 LNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDRFKSQ---CGIVYCLSKS 433
Query: 270 TCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C ++S +L+ I A YHAGL + R +V W +V AT+AFGMGID+ DVR
Sbjct: 434 ECVDVSKFLNEKCKIKAAYYHAGLAARQRVAVQKKWHDGEVHIVCATIAFGMGIDKADVR 493
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H + KS+E++YQESGRAGRD LP+ + Y D R+ ++ Q +SF T
Sbjct: 494 FVIHNTMSKSIESYYQESGRAGRDNLPAVCIALYQKKDFSRVVCMIRNGQGYKKESFKTA 553
Query: 389 ERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGE 422
+KK M YCE CRR+ +LE FGE
Sbjct: 554 MAQAKK-------MQQYCELKDECRRQTLLEHFGE 581
>gi|298209031|ref|YP_003717210.1| ATP-dependent DNA helicase [Croceibacter atlanticus HTCC2559]
gi|83848958|gb|EAP86827.1| putative ATP-dependent DNA helicase [Croceibacter atlanticus
HTCC2559]
Length = 734
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/413 (42%), Positives = 245/413 (59%), Gaps = 40/413 (9%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHE+ L+ +FG +QF+ Q I++++S D F +MPTGGGKS+CYQ+PAL K G
Sbjct: 8 LHEQ------LKKYFGFSQFKGLQEQVIKSIVSNEDTFVIMPTGGGKSLCYQLPALIKDG 61
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLR 132
+VVSPLIALM+NQV L+ ++GIA L+ T+ QVK LD +
Sbjct: 62 TAIVVSPLIALMKNQVDALRSISSQEGIAHVLNSSLNKTEINQVK------LDITNGVTK 115
Query: 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYL 191
LLYV PE ++ LK+ ++ +AIDEAHCIS WGHDFRP YR L + +
Sbjct: 116 LLYVAPESLTKDEYVDFLKE----QTISFLAIDEAHCISEWGHDFRPEYRNLKKIIKRIG 171
Query: 192 PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS 251
D+PI+ LTATA PKVQ+D++++L + N K+SFNRPNL+YEVR K + ++D+
Sbjct: 172 DDIPIIGLTATATPKVQEDILKNLNMSNANTFKASFNRPNLYYEVRPK--TKEVFSDIIR 229
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+K I+YCL R + +EL+ L GIS YHAGL+ K R+ D ++ V
Sbjct: 230 FIKKRTGKSGIIYCLSRKSVEELAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDV 289
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VVAT+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 290 VVATIAFGMGIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYAYKDIEKLE 349
Query: 372 FILSKNQSKNSQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGE 422
F + + +++ I ++V Y E S RRK +L FGE
Sbjct: 350 ------------KFMSGKPVAEQEIGHALLQEVVAYAETSMSRRKFLLHYFGE 390
>gi|410080512|ref|XP_003957836.1| hypothetical protein KAFR_0F01050 [Kazachstania africana CBS 2517]
gi|372464423|emb|CCF58701.1| hypothetical protein KAFR_0F01050 [Kazachstania africana CBS 2517]
Length = 873
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 242/404 (59%), Gaps = 15/404 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV---- 81
LV L+ F FR QL AI A LSG D F LMPTGGGKS+CYQ+P++ + G+
Sbjct: 220 LVYKLQNVFKLPNFRSDQLSAINATLSGDDVFILMPTGGGKSLCYQLPSIIRSGVTCGTT 279
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
+V+SPLI+LM++Q+ L + I +SS + + + +G L LLY++PE L
Sbjct: 280 IVISPLISLMQDQIDHLLQLNIKACSISSKLSTSQRNFYFSLFANG--DLDLLYISPEML 337
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
TA+ F + L K+H L +A+DEAHC+S+WGHDFRP Y+ L R PD+PI+ALT
Sbjct: 338 TASKKFKTTLDKLHKSRKLARIAVDEAHCLSNWGHDFRPDYKNLDYFRINYPDIPIVALT 397
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA VQ D++ +L L PLVLK SFNR NLFYEV KD +L
Sbjct: 398 ATANNLVQDDIIRNLRLGRPLVLKQSFNRNNLFYEVLPKDKKIVTSQIASYILNDFKSQS 457
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC + TC+++S L+ G+ + YHAG+ +K R V W S+R QV+ ATVAFGM
Sbjct: 458 GIVYCHSKDTCEKVSMALTQMGVKASFYHAGMTNKQRDHVQKLWQSNRYQVICATVAFGM 517
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+ +P+S+E +YQE+GRAGRD S + +Y +D R ++ ++ ++
Sbjct: 518 GIDKADVRFVIHYTVPRSLEGYYQETGRAGRDGNFSYCITFYSFNDVRSLQKLIQTDKGL 577
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
N ++ T + ++ YCE + CRRK+IL F E+
Sbjct: 578 NKENKLTH-------LDKLQHVMAYCENTINCRRKQILSYFNEE 614
>gi|282600067|ref|ZP_05972875.2| ATP-dependent DNA helicase RecQ [Providencia rustigianii DSM 4541]
gi|282566927|gb|EFB72462.1| ATP-dependent DNA helicase RecQ [Providencia rustigianii DSM 4541]
Length = 603
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 176/391 (45%), Positives = 237/391 (60%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I +L GRDC LMPTGGGKS+CYQ+PAL KPGI LVVSPLI+LM++
Sbjct: 16 FGYQSFRPGQEAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKPGITLVVSPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ L+S+QT + +I E G+ ++LLYV PE T F +L
Sbjct: 76 QVDQLKLHGVEAACLNSSQTPLEQRQIMELCAEGR--IKLLYVAPERLLTDYFSQQLSSW 133
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 134 N----ITLLAVDEAHCISQWGHDFRPEYRALGQLRRTLPNVPVMALTATADEATRTDIIR 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PLV SSF+RPN+ Y + +YK L L +K IVYC RT
Sbjct: 190 LLELNDPLVHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGKSGIVYCNSRTKV 244
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL++ R V D + Q+VVATVAFGMGI++ +VR V
Sbjct: 245 EETAERLQKRGLSVAAYHAGLDNAQREWVQDAFQKDNLQIVVATVAFGMGINKSNVRFVA 304
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 305 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 361
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 362 KLNAIAAFA------EAQTCRRLVLLNYFGE 386
>gi|194332913|ref|YP_002014773.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
gi|194310731|gb|ACF45126.1| ATP-dependent DNA helicase RecQ [Prosthecochloris aestuarii DSM
271]
Length = 617
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 166/409 (40%), Positives = 241/409 (58%), Gaps = 18/409 (4%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
T P +++ L FG FR Q + +QA+LSGRD F +MPTGGGKS+CYQ+P
Sbjct: 2 THDTLPASPSASVLNTLHKVFGFNAFRPNQGEVVQAILSGRDAFAVMPTGGGKSLCYQLP 61
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G +V+SPLIALM++QV G + GI +L+S+ + ++ + +L S + L L
Sbjct: 62 AVVMEGTCVVISPLIALMKDQVDGARVNGIRAAYLNSSLSPDEQSLVMSELTSNR--LDL 119
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV PE + F + LK++ +++ IDEAHCIS WGHDFRP Y LS+L PD
Sbjct: 120 LYVAPERFSLEHFQTVLKEVK----ISMAVIDEAHCISEWGHDFRPDYLSLSALVELFPD 175
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
VP+ A TATA KVQ D++ L L++P V+++SF+RPNL Y+VR+K D+ L +L
Sbjct: 176 VPVAAFTATATHKVQADILRKLGLRDPFVVRASFDRPNLTYDVRFK---DNVSEQLVGLL 232
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K++ I+Y R + +E +A L A G YHAGL D+ R + +I V+V
Sbjct: 233 KSSPGKAGIIYRTSRKSVNETTAMLQAKGFRALPYHAGLGDEERKKNQETFIRDEADVIV 292
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATVAFGMGID+ ++R V H ++PKS+E +YQE+GRAGRD P+ L + D ++ F
Sbjct: 293 ATVAFGMGIDKSNIRFVIHADLPKSIENYYQETGRAGRDGEPAHCTLLFSQGDIPKVRFF 352
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ E K++ ++V + S CRR +L+ FGE
Sbjct: 353 IDT---------IIDETERNKALDALQRVVSFASTSVCRRITLLDYFGE 392
>gi|329962624|ref|ZP_08300572.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
gi|328529655|gb|EGF56553.1| ATP-dependent DNA helicase RecQ [Bacteroides fluxus YIT 12057]
Length = 727
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 173/405 (42%), Positives = 241/405 (59%), Gaps = 23/405 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +
Sbjct: 5 KTNLTDQLKKYFGFDTFKGNQEAIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTGI 64
Query: 83 VVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
V+SPLIALM+NQV ++ + GIA F++S+ ++ D+ SGK +LLYV P
Sbjct: 65 VISPLIALMKNQVDAMRNFSEDDGIA-HFINSSLNKSAIDQVKSDILSGKT--KLLYVAP 121
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E + LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 122 ESLTKEENVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 178 LTATATPKVQHDIQKNLGMVEAQVFKSSFNRPNLYYEVRPKTANVDR--DIIKFIKNNPE 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +EL+ L A GI+ AYHAG++ R+ DD++ + V+VAT+AF
Sbjct: 236 KSGIIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDDFLMEKIDVIVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 296 GMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE------- 348
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 349 -KFMQGKPVAEQEIGKQL--LLETAAYAESSVCRRKALLHYFGEE 390
>gi|356531519|ref|XP_003534325.1| PREDICTED: ATP-dependent DNA helicase Q-like 2-like [Glycine max]
Length = 695
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 175/400 (43%), Positives = 241/400 (60%), Gaps = 23/400 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG + +R Q + I A++SGRD +M GGGKS+CYQ+PA+ + GI LVVSPL++L+++
Sbjct: 84 FGISSYRANQREIINAIMSGRDVLVIMAAGGGKSLCYQLPAVLRDGIALVVSPLLSLIQD 143
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI L+ST K IY+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 144 QVMGLTALGIPAYMLTSTNKGDEKF-IYKTLEKGEGELKILYVTPEKISKSKRFMSKLEK 202
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VPI+ALTATA +VQ D++
Sbjct: 203 CHHAGRLSLISIDEAHCCSQWGHDFRPDYKSLSILKTQFPRVPIVALTATATQRVQNDLI 262
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + S+ NRPNLFY V+ K ++ D A+ N ++ IVYC R
Sbjct: 263 EMLHIPRCVKFVSTVNRPNLFYMVKEKSSVGKVVIDEIAEFIQESYPNNES-GIVYCFSR 321
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ AR V W +++ QV+V TVAFGMGI++ DVR
Sbjct: 322 KECEQVAKELRERGISADYYHADMDVNAREKVHMRWSNNKLQVIVGTVAFGMGINKPDVR 381
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ LLY+ D R S
Sbjct: 382 FVIHHSLSKSMETYYQESGRAGRDGLPSECLLYFRPGDAPR------------QSSMVFY 429
Query: 389 ERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGEQVLGC 427
E S +++ D +V YC CRR F E + C
Sbjct: 430 ENSGLQNLYD---IVRYCLSKRQCRRSAFFHHFAEPLQEC 466
>gi|376003245|ref|ZP_09781059.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
gi|375328405|emb|CCE16812.1| ATP-dependent DNA helicase [Arthrospira sp. PCC 8005]
Length = 739
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 161/408 (39%), Positives = 249/408 (61%), Gaps = 13/408 (3%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PL + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KP
Sbjct: 7 PLAQPQSLQQCLKQYFGYDSFRPGQQEIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ LVVSPLIALM++QV LK+ GI FL+ST + + + G+ ++LLYV P
Sbjct: 67 GLTLVVSPLIALMQDQVEALKDNGIGATFLNSTVDIHEARQRESAILQGQ--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L ++ + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLEFLDRLEAAFGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D+++ + L+ P V +SF R NL+Y+V K + L V+++
Sbjct: 185 LTATATERVRFDIIKQIVLKQPYVHVASFYRSNLYYQVIPKQP-KKRFTQLLKVIESMSG 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 S-GIIYCSSRKRVEEVALKLQHHNIQALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q++DY E + CR + L FGE+ G
Sbjct: 363 DVDEQRIARQQ---------LRQVIDYAESTECRHRIQLRYFGEEFPG 401
>gi|219853011|ref|YP_002467443.1| ATP-dependent DNA helicase RecQ [Methanosphaerula palustris E1-9c]
gi|219547270|gb|ACL17720.1| ATP-dependent DNA helicase RecQ [Methanosphaerula palustris E1-9c]
Length = 606
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 246/395 (62%), Gaps = 17/395 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ ++G++ F Q + I +VL G+D +M TGGGKS+CYQ+PAL G+ +VVSPLI
Sbjct: 7 LLKRYWGYSSFLPHQKEIIGSVLKGQDTLAIMATGGGKSLCYQLPALCLGGLTVVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L E+GI +S+ +V+TKI DL +GK +RLL+V+PE GF+
Sbjct: 67 SLMKDQVDDLNERGILAVAFNSSMEYRVRTKIEADLKNGK--IRLLFVSPERCMQAGFLD 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+K R L+A+DEAHCIS WGH+FRP YR+L+ L+ P VP++ALTATA P+V+
Sbjct: 125 LIKAAPIR----LIAVDEAHCISEWGHNFRPEYRQLAQLKKLFPAVPLVALTATAIPEVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ + L + + SFNR NL Y V K + L + L + I+YC+ +
Sbjct: 181 RDICQQLGISDAHEFVGSFNRKNLMYRVVEKK---NPKILLLTFLSRHQHESGIIYCMSK 237
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ L G + AYHAGL+ + R+ V D +I + +V AT+AFGMGID+ DVR
Sbjct: 238 KETEEVARDLRRRGYNAQAYHAGLSKQVRTKVQDGFIKNTITIVCATIAFGMGIDKPDVR 297
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H++IPK++E++YQE+GRAGRD PS+ +L+Y D R+ +L +
Sbjct: 298 FVIHYDIPKTVESYYQETGRAGRDGRPSECVLFYSRGDIARVRSMLEHDHMT-------- 349
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
ER+ + S+ +M +YCE CRR+ +L FGE+
Sbjct: 350 ERNLRASLRKLQEMTEYCEAITCRRRFLLSYFGEE 384
>gi|372209002|ref|ZP_09496804.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium S85]
Length = 734
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 238/399 (59%), Gaps = 25/399 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q D I++V G+D F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 12 LKKYFGFNKFKGLQEDVIRSVAEGKDTFVIMPTGGGKSLCYQLPALMKEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ GIA SS +V K+ D+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISDNPGIAHVLNSSLNKTEV-AKVKSDIVNG--VTKLLYVAPESLTKDE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
++ LKK ++ AIDEAHCIS WGHDFRP YR L + + DVPI+ LTATA P
Sbjct: 129 YVDFLKKQK----ISFFAIDEAHCISEWGHDFRPEYRNLRRIITRIGDVPIIGLTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ+D++++L + N K+SFNRPNLFYEVR K D +D+ ++ ++YC
Sbjct: 185 KVQEDIIKTLGMTNANTFKASFNRPNLFYEVRPK--TKDVTSDIIRFIRQRLGKSGVIYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++ L GIS YHAGL+ K R+ D ++ V+VAT+AFGMGID+
Sbjct: 243 LSRKKVEEIAQTLQVNGISALPYHAGLDAKTRAKHQDMFLMEDVDVIVATIAFGMGIDKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F+ +K S+
Sbjct: 303 DVRFVIHHDIPKSLESYYQETGRAGRDDGEGYCLAFYSYKDIEKLEKFMANKPVSEQELG 362
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ ++V Y E S RR+ +L FGE+
Sbjct: 363 HAL-----------LQEVVGYAETSMSRRRYLLHYFGEE 390
>gi|420149707|ref|ZP_14656877.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
gi|394753188|gb|EJF36768.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 335
str. F0486]
Length = 732
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 247/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 8 KDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 67
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 68 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 123
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 124 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 179
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 180 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 237
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 238 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 297
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 298 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 357
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 358 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 394
>gi|424842508|ref|ZP_18267133.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
gi|395320706|gb|EJF53627.1| ATP-dependent DNA helicase RecQ [Saprospira grandis DSM 2844]
Length = 737
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/407 (42%), Positives = 250/407 (61%), Gaps = 27/407 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG QF+ +Q + IQ++L G+D F +MPTGGGKS+CYQ+PAL G +VV
Sbjct: 7 SLTTALKKYFGFEQFKGQQEEIIQSILGGQDTFVIMPTGGGKSLCYQLPALLSEGTAIVV 66
Query: 85 SPLIALMENQVIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
SPLIALM+NQV ++ E FL+S+ + ++ +D+ SG + +LLY+ PE L
Sbjct: 67 SPLIALMKNQVDAVRSYAESDQVAHFLNSSLSRAKVKEVKQDIVSG--ATKLLYIAPETL 124
Query: 141 TA--TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPIL 197
T T F+S++K ++ VA+DEAHCIS WGHDFRP YR++ S+ N ++PI+
Sbjct: 125 TKEDTLRFLSQIK-------VSFVAVDEAHCISEWGHDFRPEYRRIRSMIENIEQEIPII 177
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKV+ D++++L L+ P SFNR NLFYEV+ K +D + +K
Sbjct: 178 ALTATATPKVRMDIVKTLRLEAPREFMDSFNRDNLFYEVQPKGKKEDVLRRIVQFIKDKA 237
Query: 258 -DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+Y R T +E++ LS I A YHAGL K RS D ++ + V+VAT+
Sbjct: 238 PNESGIIYVQNRKTTEEVAKVLSVNDIKAAPYHAGLEAKLRSDTQDAFLMEKVDVIVATI 297
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + L +Y D R+E L
Sbjct: 298 AFGMGIDKPDVRFVIHYDIPKSIENYYQETGRAGRDGQHAHCLTFYSYKDILRLEKFL-- 355
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + RE ++ ++M+ Y E + CRR+ +L FGE+
Sbjct: 356 ----RDKPVAEREMGAQL----LAEMIAYAETTACRRRFLLHYFGEK 394
>gi|393779596|ref|ZP_10367834.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
gi|392609916|gb|EIW92711.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 412
str. F0487]
Length = 727
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 247/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 353 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 389
>gi|256820777|ref|YP_003142056.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429746398|ref|ZP_19279750.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429756068|ref|ZP_19288682.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
gi|256582360|gb|ACU93495.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea DSM 7271]
gi|429166284|gb|EKY08277.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 380
str. F0488]
gi|429172170|gb|EKY13749.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 324
str. F0483]
Length = 729
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 247/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KDDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 355 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 391
>gi|357043893|ref|ZP_09105579.1| ATP-dependent DNA helicase RecQ [Prevotella histicola F0411]
gi|355367947|gb|EHG15373.1| ATP-dependent DNA helicase RecQ [Prevotella histicola F0411]
Length = 727
Score = 322 bits (825), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/405 (42%), Positives = 239/405 (59%), Gaps = 19/405 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L+GRD F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQESIIRNLLAGRDTFVLMPTGGGKSLCYQLPSLIMDGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDNVRADILSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENMEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIETIGLAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIIRSLGIEDCAEFKSSFNRPNLYYEVRPKKNDDDTNKQIIKFIKQHAGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEEIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y +D +++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICVVFYSKNDLKKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ E+ + + + Y E S CRRK +L FGE+ C
Sbjct: 353 EGKPVAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEEYAKC 395
>gi|420158748|ref|ZP_14665562.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
gi|394763235|gb|EJF45355.1| ATP-dependent DNA helicase RecQ [Capnocytophaga ochracea str. Holt
25]
Length = 727
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 247/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KDDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEKYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 353 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 389
>gi|19114004|ref|NP_593092.1| RecQ type DNA helicase Rqh1 [Schizosaccharomyces pombe 972h-]
gi|1175484|sp|Q09811.1|HUS2_SCHPO RecName: Full=ATP-dependent DNA helicase hus2/rqh1
gi|1019410|emb|CAA91177.1| RecQ type DNA helicase Rqh1 [Schizosaccharomyces pombe]
gi|1684754|emb|CAA70577.1| DNA-helicase [Schizosaccharomyces pombe]
Length = 1328
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 251/404 (62%), Gaps = 23/404 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVS 85
L+ F FR QL+AI LSG+D F LMPTGGGKS+CYQ+PA+ A G+ LV+S
Sbjct: 511 LKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVIS 570
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL++LM++Q+ L++ I LS Q + ++ L + ++LLYVTPE A+ G
Sbjct: 571 PLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNG 630
Query: 146 FMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ LK ++ R LL + IDEAHC+S WGHDFRP Y++L LR+ +P +ALTATA
Sbjct: 631 AITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATAN 690
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--DTCAI 262
V+KD++ +L ++N L LKSSFNRPNLFYE++ K D Y +L + +NG I
Sbjct: 691 EIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK---KDLYTELYRFI-SNGHLHESGI 746
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
+YCL RT+C++++A L G+ YHAGL R + ++W S +++VAT+AFGMG
Sbjct: 747 IYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMG 806
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D + I+S +
Sbjct: 807 VDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDA 866
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
T+ER + Q++ +CE + CRRK++L FGE
Sbjct: 867 -----ETKERQRQM----LRQVIQFCENKTDCRRKQVLAYFGEN 901
>gi|392396238|ref|YP_006432839.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
gi|390527316|gb|AFM03046.1| ATP-dependent DNA helicase RecQ [Flexibacter litoralis DSM 6794]
Length = 725
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 242/398 (60%), Gaps = 25/398 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG++ FR Q D I +V + D LMPTGGGKS+C+QIPA+ GI +V+SPLIA
Sbjct: 10 LQQYFGYSTFRPLQEDIISSVYAKNDTLVLMPTGGGKSICFQIPAITLDGICIVISPLIA 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L+ GI+ FL+S+Q M + +I ++ GK ++LLYV+PE T F
Sbjct: 70 LMKDQVNALQTNGISAAFLNSSQDMAEQREIESEVKQGK--IKLLYVSPEKLLTESFTYF 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + ++L A+DEAHCIS WGHDFRP Y +L SL++ P VP++ALTATA ++
Sbjct: 128 LQSLS----ISLFAVDEAHCISQWGHDFRPEYTQLKSLKDRFPFVPMIALTATADKITRR 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
D++ L L+NP +SFNRPNL V YK + + S + + I+YCL
Sbjct: 184 DIISQLGLENPTEFVASFNRPNLSLNVLPAYKRM-----DSIVSYILRRPNESGIIYCLS 238
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G+ YHAGLN RS V DD+I+ R ++ ATVAFGMGID+ +V
Sbjct: 239 RKNTENVAARLQKAGMKADYYHAGLNAHERSRVQDDFITDRTPIICATVAFGMGIDKPNV 298
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+NIPK++E +YQE GRAGRD L ++L+Y +D +E + + F+
Sbjct: 299 RWVMHYNIPKNIEGYYQEIGRAGRDGLKGDTMLFYSFND---LEVL---------KGFAE 346
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
+ + ++ +M Y + CRRK +L FGE +L
Sbjct: 347 QSGQKELQLAKLDRMQQYADAKICRRKILLSYFGETLL 384
>gi|348027736|ref|YP_004870422.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
gi|347945079|gb|AEP28429.1| ATP-dependent DNA helicase [Glaciecola nitratireducens FR1064]
Length = 627
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 162/411 (39%), Positives = 245/411 (59%), Gaps = 22/411 (5%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
T K+ + K+L+ FG+++FR Q++ I VL+G+D L+PTGGGKS+CYQ+P
Sbjct: 23 TAKSAEGQHNQQCAKILKDTFGYSEFRPGQMEVIDKVLNGQDTLILLPTGGGKSLCYQVP 82
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
AL GI +VVSPLI+LM++QV L +G+ +L+S+Q + KI E L +G+ L L
Sbjct: 83 ALVLEGITIVVSPLISLMQDQVQQLTAQGVNAAYLNSSQDAEQSQKITEQLYNGE--LDL 140
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV PE F++ L++++ ++L+A+DEAHC+S WGHDFR YR+L L+++ +
Sbjct: 141 LYVAPERLLQSYFLNSLQRVN----VSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSHFDN 196
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCS 251
VP +ALTATA Q D+ L L NP V K F+RPN+ Y + +YK + + +
Sbjct: 197 VPFIALTATADHATQVDIQHQLQLDNPFVFKGGFDRPNIRYNLLAKYK-----GFEQVVT 251
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+K IVYC R D+L+ L + GI C AYHAG + R V ++ QV
Sbjct: 252 FVKQQEGAAGIVYCNSRAKVDDLTQRLQSAGIKCDAYHAGHDTATREFVQTQFLKDDLQV 311
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371
VVATVAFGMGI++ +VR V H ++P+S+E++YQE+GRAGRD +P+++LL + D R++
Sbjct: 312 VVATVAFGMGINKSNVRFVVHHDVPRSVESYYQETGRAGRDGMPAEALLLFDERDAARIK 371
Query: 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+S + + + F M + E CRR+ +L F +
Sbjct: 372 QWISTGTAADRYDIEMHK---------FEAMESFAEAQTCRRQVLLNYFSD 413
>gi|315223920|ref|ZP_07865765.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
gi|314946092|gb|EFS98096.1| ATP-dependent helicase RecQ [Capnocytophaga ochracea F0287]
Length = 729
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 247/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KDDLHSALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L +Q V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMQEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 355 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 391
>gi|268592895|ref|ZP_06127116.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
gi|291311686|gb|EFE52139.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri DSM 1131]
Length = 608
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 175/391 (44%), Positives = 238/391 (60%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGAILDNRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ L+S+QT Q + +I E G+ ++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGVNAACLNSSQTSQEQRQIMELCSQGE--IKLLYVAPERLLTDYFLSQLAGW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 N----ITLLAVDEAHCISQWGHDFRPEYRALGQLRQSLPNVPVMALTATADETTRADIIR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L PLV SSF+RPN+ Y + +YK L L +K IVYC R+
Sbjct: 195 LLELHEPLVHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL+ R V D ++ QVVVATVAFGMGI++ +VR V
Sbjct: 250 EETTERLQKRGLSVAAYHAGLDAAQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|218262311|ref|ZP_03476825.1| hypothetical protein PRABACTJOHN_02499 [Parabacteroides johnsonii
DSM 18315]
gi|218223462|gb|EEC96112.1| hypothetical protein PRABACTJOHN_02499 [Parabacteroides johnsonii
DSM 18315]
Length = 729
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/410 (41%), Positives = 248/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 4 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 63
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ SG+ +LLY
Sbjct: 64 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRSGRT--KLLY 120
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 121 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 176
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 177 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 234
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 235 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 294
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 295 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 350
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 351 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 394
>gi|429750375|ref|ZP_19283426.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
gi|429165304|gb|EKY07364.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 332
str. F0381]
Length = 727
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 247/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KDDLHSALKHYFGFESFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISNGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGTNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLAMTDANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +EL+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 PKKSGIIYCLSRKKVEELTQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 353 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 389
>gi|357054028|ref|ZP_09115119.1| ATP-dependent DNA helicase RecQ [Clostridium clostridioforme
2_1_49FAA]
gi|355384913|gb|EHG31966.1| ATP-dependent DNA helicase RecQ [Clostridium clostridioforme
2_1_49FAA]
Length = 627
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 241/396 (60%), Gaps = 8/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FRD Q IQ +L GRD +MPTG GKS+CYQIPAL GI LV+SPL
Sbjct: 5 EILKHYFGYDTFRDGQDVLIQNILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +++S+ T K+ + +G+ ++YV PE + F+
Sbjct: 65 ISLMKDQVSSLNQVGILAAYINSSLTAAQYYKVLDLARAGR--YPIIYVAPERLMSEDFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ + +++VA+DEAHC+S WG DFRPSY K+ N LPD P++ A TATA +
Sbjct: 123 RF--ALSGQVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPDRPVVSAFTATATAQ 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+++ L L+NP V+ + FNRPNL++ V+ D YA + + L+ + I+YCL
Sbjct: 181 VRDDIIDILMLRNPQVMTTGFNRPNLYFAVQSPK---DKYATMVNYLERHKGESGIIYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ + L G S YHAGL+D +D+I R Q++VAT AFGMGID+ +
Sbjct: 238 TRKVVEEVCSQLIREGFSVTRYHAGLSDSEHRHNQEDFIYDRAQIMVATNAFGMGIDKSN 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK+ME++YQE+GRAGRD PS+ +L YG D +F + NQ +
Sbjct: 298 VRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPV 357
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
TRE ++ +M YC + C R IL FGE
Sbjct: 358 TREIVMERDRERLRKMTFYCFTNECLRDYILRYFGE 393
>gi|302890734|ref|XP_003044250.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
77-13-4]
gi|256725172|gb|EEU38537.1| hypothetical protein NECHADRAFT_64925 [Nectria haematococca mpVI
77-13-4]
Length = 1302
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 163/405 (40%), Positives = 241/405 (59%), Gaps = 17/405 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ FG +FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 694 RMLKDRFGMEEFRHNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTQGVTIV 753
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + K ++ + G P + LLYVTPE+
Sbjct: 754 VSPLLSLMQDQVDHMKRLGIQAVAFHGECSAEYKRQVMAAFEEGIPEHHVELLYVTPEMV 813
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ +H RG L + IDEAHCIS WGHDFRP Y+ L +R P VP++ALT
Sbjct: 814 GKSTAFNNGMQTLHGRGKLARIVIDEAHCISQWGHDFRPDYKALGQVRQRYPGVPVMALT 873
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + SFNRPNL+YEVR K + + S+++ +
Sbjct: 874 ATATQNVIADIRHNLGMDRCQTFSQSFNRPNLYYEVRPKTTNNKTIDSIASLIRLQYRNQ 933
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ L+ GI YHA ++ + + V D W + +VVVATVAFG
Sbjct: 934 SGIVYTISRKNAEKVAESLTKQGIMARHYHAHVDPREKVEVQDGWQRGQVKVVVATVAFG 993
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++ +
Sbjct: 994 MGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGNPSDCILFYGKGDIRVLKKLIADGEG 1053
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
Q ++ +S +++ +C+ S CRR +IL FGE+
Sbjct: 1054 SEEQ--------KERQMSMLNRVTTFCDNRSDCRRAEILRYFGEE 1090
>gi|332882051|ref|ZP_08449686.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|357048209|ref|ZP_09109763.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
gi|332679975|gb|EGJ52937.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|355528792|gb|EHG98270.1| ATP-dependent DNA helicase RecQ [Paraprevotella clara YIT 11840]
Length = 608
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 169/400 (42%), Positives = 240/400 (60%), Gaps = 23/400 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG FR Q D I +L+G D LMPTGGGKS+CYQ+PAL + G +V+SPLI
Sbjct: 4 ILKRYFGFDSFRPLQEDIIGNILAGHDVVVLMPTGGGKSLCYQVPALMREGTTVVISPLI 63
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGF 146
+LM++QV GL+ G+ L+S ++ G+ L+LLY++PE + P
Sbjct: 64 SLMKDQVEGLRANGVPAAALNSMNDEAESARVRAACLRGE--LKLLYISPERLMLELPYL 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +K ++L A+DEAHCIS WGHDFRP Y +L LR PDVPI+ALTATA
Sbjct: 122 IRDMK-------VSLFAVDEAHCISQWGHDFRPEYAQLGLLRQTFPDVPIVALTATADRL 174
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D+ + L L +P+V SSF+RPNL +V+ D + ++ + D C I+YCL
Sbjct: 175 TREDIQKQLALSDPVVFISSFDRPNLSLDVKRGYQKKDKDRAILELIARHPDDCGIIYCL 234
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+ T + ++ L I+ AYHAGL + R DD+I R QVV ATVAFGMGID+ +
Sbjct: 235 SKKTTESVAEMLRGHDIAAVAYHAGLPTEERERAQDDFIHDRVQVVCATVAFGMGIDKSN 294
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PKS+E FYQE GRAGRD LP++++L+Y + D ++ SK +Q
Sbjct: 295 VRFVIHYNLPKSIEGFYQEIGRAGRDGLPAETVLFYSLGDLVQL--------SKFAQESG 346
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
RE + +K +M +Y E CRR+ +L FGE G
Sbjct: 347 QREINMEK----LRRMQEYAESDVCRRRILLNYFGEHTDG 382
>gi|354595778|ref|ZP_09013795.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
gi|353673713|gb|EHD19746.1| ATP-dependent DNA helicase RecQ [Brenneria sp. EniD312]
Length = 610
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/403 (43%), Positives = 254/403 (63%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A +SGRDC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIINATISGRDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ SG+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQHEVMAGCRSGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L IH R +L+A+DEAHCIS WGHDFRP YR L ++ + P +P++ALTA
Sbjct: 127 TTDSFLDHL--IHWRP--SLIAVDEAHCISQWGHDFRPEYRALGQVKQHFPGLPVIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PLV SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRSDIVRLLDLQSPLVQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R +++SA L + G+S AAYHAGL+++ R+ V + + QVVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGQQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|307132960|ref|YP_003884976.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
gi|306530489|gb|ADN00420.1| ATP-dependent DNA helicase [Dickeya dadantii 3937]
Length = 614
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 176/415 (42%), Positives = 253/415 (60%), Gaps = 22/415 (5%)
Query: 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC 69
ST+ L+++ +++LR FG+ QFR Q I A +SGRDC +MPTGGGKS+C
Sbjct: 2 STADVLNADVLNKETLAMQVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLC 61
Query: 70 YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129
YQIPAL G+ LVVSPLI+LM++QV L+ G+A L+STQT + + ++ G+
Sbjct: 62 YQIPALVLEGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQTREQQQAVFSACRRGE- 120
Query: 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189
L+LLY+ PE T GF+ +L ++ L+AIDEAHCIS WGHDFRP YR L ++
Sbjct: 121 -LKLLYIAPERLTTDGFLEQLTHWNT----TLIAIDEAHCISQWGHDFRPEYRALGQIKQ 175
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYA 247
LP +PI+ALTATA ++D+ L L++PL+ SSF+RPN+ Y + ++K L
Sbjct: 176 QLPALPIVALTATADETTRQDIARLLDLRDPLINISSFDRPNIRYTLVEKFKPL-----D 230
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
L ++ IVYC R ++L A L G+S AYHAGL++ RS V + ++
Sbjct: 231 QLWLFVQGQRGKSGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRD 290
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
QVVVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++ L+Y D
Sbjct: 291 DLQVVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPAD- 349
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
M ++ + K + ER ++ F+ E CRR +L FGE
Sbjct: 350 --MAWLRRCLEEKPAGVQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 396
>gi|194744401|ref|XP_001954683.1| GF16620 [Drosophila ananassae]
gi|190627720|gb|EDV43244.1| GF16620 [Drosophila ananassae]
Length = 1512
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 241/403 (59%), Gaps = 15/403 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 677 LMHGLSYSFGLKSFRPNQLQVINASLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 736
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q L I + LS Q + IY DL++ P ++LLYVTPE ++++
Sbjct: 737 PLKSLIFDQTNKLASLDICAKSLSGEQKLADAMAIYRDLEAQPPMVKLLYVTPEKISSSA 796
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L +++ ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 797 RFQDTLDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVPTIALTATAT 856
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L++ SSFNR NL Y+V K LDD + S +
Sbjct: 857 PRVRLDILAQLNLKHCKWFLSSFNRSNLRYKVMPKKGASTLDDISGYIRS---KPAHSSG 913
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CD+++ + G+ AYHAGL D R + DW++ + +V+ AT+AFGMG
Sbjct: 914 IIYCLSRKECDDVAKKMCKDGVRAVAYHAGLTDNERETRQKDWLTGKLRVICATIAFGMG 973
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E FYQE+GRAGRD + +LYY D R++ +L ++
Sbjct: 974 IDKPDVRFVLHYSLPKSIEGFYQEAGRAGRDGEVADCILYYNYADMLRIKKMLDADK--- 1030
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K I + +++V YCE CRR + L+ FGE
Sbjct: 1031 ----ALQYNVKKMHIDNLNRIVGYCENLMDCRRAQQLDYFGEH 1069
>gi|423343078|ref|ZP_17320792.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
gi|409216754|gb|EKN09737.1| ATP-dependent DNA helicase RecQ [Parabacteroides johnsonii
CL02T12C29]
Length = 726
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 169/410 (41%), Positives = 248/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ SG+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRSGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 232 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 348 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 391
>gi|365990115|ref|XP_003671887.1| hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
gi|343770661|emb|CCD26644.1| hypothetical protein NDAI_0I00750 [Naumovozyma dairenensis CBS 421]
Length = 1434
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 253/404 (62%), Gaps = 19/404 (4%)
Query: 27 VKL-LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
VKL LR F FR Q +A+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 656 VKLKLRQIFKLPGFRPNQEEAVSATLSGKDVFILMPTGGGKSLCYQLPAVIKSGKTKGTT 715
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL- 140
+V+SPLI+LM++QV L +K I SS T++ K +++ G L ++Y++PE+
Sbjct: 716 IVISPLISLMQDQVQHLLDKNIKASMFSSRGTVEEKRQVFNLFICG--LLDVVYISPEMI 773
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+A+ +K++HS G L V +DEAHC+S+WGHDFRP Y++L + PDVP++ALT
Sbjct: 774 SASEQCKRAIKRLHSDGKLARVVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPMMALT 833
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA+ +V+ D++ +L L++P+ LK SFNR NL+YEVR K+ + ++ ++K+ +
Sbjct: 834 ATASEQVRMDIIHNLELKDPVFLKQSFNRTNLYYEVRKKN--KNTIFEIADMIKSKFRNQ 891
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC + +C++ S + GI A YHAG+ R + W + QV+ ATVAFG
Sbjct: 892 TGIIYCHSKNSCEQTSNQMQRAGIKSAYYHAGMEPDDRLKIQKAWQADEIQVICATVAFG 951
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 952 MGIDKPDVRFVFHFTVPRTLEGYYQETGRAGRDGKYSYCITYFCFRDVRTMQTMIQKDEN 1011
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1012 LDRE-------NKEKHLNKLQQVMAYCDNATDCRRKLVLSYFNE 1048
>gi|406983517|gb|EKE04701.1| hypothetical protein ACD_20C00021G0003 [uncultured bacterium]
Length = 608
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 166/406 (40%), Positives = 250/406 (61%), Gaps = 22/406 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LH+K + +L FG+ FR++Q + I +++G D LMPTGGGKS+CYQIPAL PG
Sbjct: 5 LHQKP--LDILHSIFGYEHFRNQQAEIIDHIINGNDALILMPTGGGKSLCYQIPALCLPG 62
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ +VVSPLIALM++QV LK+ GI+ L+ST + + +++ E + +G+ L ++YV+PE
Sbjct: 63 VTIVVSPLIALMQDQVESLKQLGISASVLNSTLSARESSEVEEKMRNGE--LDIIYVSPE 120
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
T F++ +++ L L AIDEAHC+S WGHDFRP Y + S+L+N P VP +AL
Sbjct: 121 RLNTESFLNNIEQCE----LALFAIDEAHCVSQWGHDFRPEYLEFSNLKNRFPHVPRIAL 176
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--G 257
TATA ++D+++ L L+N SSF+RPN+ Y + KD + L + L G
Sbjct: 177 TATADELTRQDIIKHLGLENGRTFISSFDRPNIRYRIMTKD---NEKKQLLNFLNEEHKG 233
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
D+ IVYC+ R E++ YL G YHAGLN R D +I V+VAT+A
Sbjct: 234 DS-GIVYCISRDKVMEIAKYLKENGYDALPYHAGLNKDKRMKNQDRFIKDDGVVMVATIA 292
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ DVR V H ++PKS+E++YQE+GRAGRD LPS + + YG++D +++ + ++
Sbjct: 293 FGMGINKPDVRFVAHLDLPKSVESYYQETGRAGRDGLPSDAWMVYGIEDIVKLQQFIIRS 352
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
++ ++ ++ Y E CRR+ +LE FGE+
Sbjct: 353 KANAEHKMLEYQK--------LDALLGYVETVKCRRQVLLEYFGEK 390
>gi|443244229|ref|YP_007377454.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
gi|442801628|gb|AGC77433.1| ATP-dependent DNA helicase [Nonlabens dokdonensis DSW-6]
Length = 730
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 177/407 (43%), Positives = 242/407 (59%), Gaps = 30/407 (7%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L + L+ +FG QFR Q I ++L+ DCF +MPTGGGKS+CYQ+PAL + G +VV
Sbjct: 7 GLEENLKKYFGFEQFRGLQKQVITSLLNKEDCFVIMPTGGGKSLCYQLPALMQEGTAIVV 66
Query: 85 SPLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
SPLIALM+NQV ++ G+A LS T QVK +D+++G +LLYV
Sbjct: 67 SPLIALMKNQVDAIRGVSDHDGVAHVLNSSLSKTDVQQVK----DDIENG--ITKLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE ++ LK+ ++ +A+DEAHCIS WGHDFRP YR L + + + D+PI
Sbjct: 121 PESLTKEEYVDFLKQQK----ISFLAVDEAHCISEWGHDFRPEYRNLRKIIDRIGSDIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ LTATA PKVQ+D++++L + + ++SFNRPNLFYEVR K DA D+ +K N
Sbjct: 177 IGLTATATPKVQEDILKNLQITDATTFQASFNRPNLFYEVRPKTANVDA--DITRFIKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R +EL+ L GI YHAGL+ K R D ++ VVVAT+
Sbjct: 235 EGKSGIVYCLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMS- 353
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + +E + +MV Y E S RR+ IL FGE+
Sbjct: 354 -----GKPIAEQEIGH----ALLQEMVGYSETSMSRRQYILHYFGEE 391
>gi|326800755|ref|YP_004318574.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
gi|326551519|gb|ADZ79904.1| ATP-dependent DNA helicase RecQ [Sphingobacterium sp. 21]
Length = 729
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 175/411 (42%), Positives = 244/411 (59%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ L L+ FG F+ Q I +L +D F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 EKTLFDNLQNFFGFDTFKGDQEAIITNILQKKDTFVIMPTGGGKSICYQLPALMSEGTAV 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G A FL+S+ T++ +D+ GK +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGADSIAHFLNSSLNKSEITRVKQDVLDGKT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
A + LK I ++ VA+DEAHCIS WGHDFRP YRK+ + N + ++PI+A
Sbjct: 122 SLAKTDNIEFLKLI----TVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + + KSSFNRPNL+YEVR K + ++ +K N
Sbjct: 178 LTATATPKVQSDIRKNLQMNDATLFKSSFNRPNLYYEVRPKK---NVVKEIVKFIKNNPS 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GIS YHAGL+ K R+ D ++ +V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEIAEVLNINGISALPYHAGLDAKTRAETQDKFLMEDVEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYSEKDIEKLTKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E S CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYSESSVCRRKQILHYFGENFNEAGC 395
>gi|381186153|ref|ZP_09893727.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
gi|379651827|gb|EIA10388.1| ATP-dependent DNA helicase RecQ [Flavobacterium frigoris PS1]
Length = 731
Score = 321 bits (823), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 173/401 (43%), Positives = 244/401 (60%), Gaps = 25/401 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I+++L ++ F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVIKSLLDRQNTFVIMPTGGGKSLCYQLPALTQDGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T T++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEITQVKKDITSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
++ LK + ++ VAIDEAHCIS WGHDFRP YR L + L D+PI+ LTATA
Sbjct: 127 EENVNFLKTVK----ISFVAIDEAHCISEWGHDFRPEYRNLKHIIKQLGDLPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMCDATTFKASFNRPNLYYEVRTK--TKNVESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVEAIAHVLQVNGISAVPYHAGLDAKTRARHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNS 382
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE 360
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
F+ ++V Y E S RRK +L FGE+
Sbjct: 361 IGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|428170384|gb|EKX39309.1| hypothetical protein GUITHDRAFT_76434 [Guillardia theta CCMP2712]
Length = 434
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 167/380 (43%), Positives = 235/380 (61%), Gaps = 31/380 (8%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-AKPGIVLVVSP 86
++L FG R Q I VL G+D F +MPTG GKS+CYQ+PA+ A+ + LVV+P
Sbjct: 35 RILHQVFGFTSLRGHQKRVISEVLDGKDAFAVMPTGAGKSLCYQLPAVYAESKVTLVVTP 94
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS-----------LRLLY 135
L+ALM QV L+ KG+ + S+Q+ + + ++ DL GKPS +RLLY
Sbjct: 95 LLALMLGQVKSLQSKGVLASAIYSSQSKRDRERVINDL-LGKPSPDSEPLTFPPMMRLLY 153
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
VTPEL T F L ++ G +NL+AIDEAHC+S WGH+FRP +RKL S+ P VP
Sbjct: 154 VTPELLCTSNFQQDLSILYDGGYINLIAIDEAHCVSEWGHEFRPCFRKLGSIHQRFPSVP 213
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL---DDAYADLCSV 252
LALTATA +V++DV+ L ++ + SF+RPN+ Y+VRYKDL+ + + D+ S
Sbjct: 214 WLALTATATEQVRRDVVNILKIKVDKIFMQSFDRPNIRYQVRYKDLIGEDEQVFEDIASF 273
Query: 253 LKAN------GDTCA---------IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+ + G+ A I+YC + +CD L+ LSA G+ AYHAGL + R
Sbjct: 274 VGESLNSLPRGEPVAAGLQYACSGIIYCHTKASCDALAQQLSAIGVKAKAYHAGLRPRER 333
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
V D+W+ +VV AT+AFGMGID+KDVR V H ++PKS+EA+YQE+GRAGRD S+
Sbjct: 334 MQVQDEWMEGVTKVVCATIAFGMGIDKKDVRFVIHQSMPKSLEAYYQETGRAGRDGGESE 393
Query: 358 SLLYYGMDDRRRMEFILSKN 377
+L+Y+ DD F+L K+
Sbjct: 394 ALMYFSEDDANLHRFLLRKS 413
>gi|85818249|gb|EAQ39409.1| ATP-dependent DNA helicase RecQ [Dokdonia donghaensis MED134]
Length = 701
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 166/407 (40%), Positives = 247/407 (60%), Gaps = 25/407 (6%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N L ++ L KLL+ HFG+ FR Q + I+++ +G+D +MPTGGGKSMC+Q+PALA
Sbjct: 3 NSALPTQQDLHKLLKTHFGYDGFRPNQQEIIESICNGQDALVIMPTGGGKSMCFQLPALA 62
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ LV+SPLIALM++QV L+ GI + +STQ + K+ DL +L L+YV
Sbjct: 63 LDGVALVISPLIALMKDQVDALRANGIKAAYYNSTQPPEETQKVLSDLQHN--ALDLIYV 120
Query: 137 TPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE L +S +K ++L+AIDEAHCISSWGHDFRP+Y +L L+ P+ P
Sbjct: 121 APESLQLLDPVLSTIK-------ISLIAIDEAHCISSWGHDFRPAYTQLGYLKRRYPETP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA Q D+ + L + SSF+RPNL+ +VR ++ D L+
Sbjct: 174 LVALTATADRSTQDDIAQQLSIPQAKKYISSFDRPNLYLDVRPGQKRNEQILDF---LED 230
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ I+YCL R + + L+A L + G + AAYHAG++ + RS V +D+I+ ++ AT
Sbjct: 231 HPFESGIIYCLSRKSTENLAAKLKSNGHNAAAYHAGMSAEQRSKVQEDFINDTTPIICAT 290
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ +VR V H+N+PK++E +YQE GRAGRD LPS ++L+Y D ++
Sbjct: 291 IAFGMGIDKSNVRWVIHYNMPKNLEGYYQEIGRAGRDGLPSHTVLFYSYADTMQL----- 345
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ F +++ ++ +M Y E CRRK ++ FGE
Sbjct: 346 -------RQFIDGAKNADYQMAKLDRMQQYAEALSCRRKVLINYFGE 385
>gi|260591259|ref|ZP_05856717.1| ATP-dependent DNA helicase RecQ [Prevotella veroralis F0319]
gi|260537124|gb|EEX19741.1| ATP-dependent DNA helicase RecQ [Prevotella veroralis F0319]
Length = 727
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 240/401 (59%), Gaps = 19/401 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFEKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ K+ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDKVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTAT
Sbjct: 125 KEENMAFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRYAIDTIGAAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIIRSLGIEDCAEFKSSFNRPNLYYEVRAKRSDDDTSKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y +D +++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGKEGICIVFYSKNDLKKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 353 EGKPVAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEE 391
>gi|150003035|ref|YP_001297779.1| ATP-dependent DNA helicase recQ [Bacteroides vulgatus ATCC 8482]
gi|212690531|ref|ZP_03298659.1| hypothetical protein BACDOR_00013 [Bacteroides dorei DSM 17855]
gi|237708012|ref|ZP_04538493.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 9_1_42FAA]
gi|265754201|ref|ZP_06089390.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|294775659|ref|ZP_06741167.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|319642190|ref|ZP_07996850.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 3_1_40A]
gi|345515920|ref|ZP_08795417.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|345518199|ref|ZP_08797654.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|423229918|ref|ZP_17216323.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|423241571|ref|ZP_17222683.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|423247008|ref|ZP_17228059.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|423314860|ref|ZP_17292792.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
gi|149931459|gb|ABR38157.1| ATP-dependent DNA helicase recQ [Bacteroides vulgatus ATCC 8482]
gi|212666880|gb|EEB27452.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei DSM 17855]
gi|229436550|gb|EEO46627.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei 5_1_36/D4]
gi|229457998|gb|EEO63719.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 9_1_42FAA]
gi|254836466|gb|EET16775.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 4_3_47FAA]
gi|263234910|gb|EEZ20465.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_33FAA]
gi|294450503|gb|EFG18995.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus PC510]
gi|317386176|gb|EFV67095.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 3_1_40A]
gi|392632709|gb|EIY26667.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T00C15]
gi|392633769|gb|EIY27707.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL02T12C06]
gi|392641157|gb|EIY34942.1| ATP-dependent DNA helicase RecQ [Bacteroides dorei CL03T12C01]
gi|392681042|gb|EIY74404.1| ATP-dependent DNA helicase RecQ [Bacteroides vulgatus CL09T03C04]
Length = 726
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 170/408 (41%), Positives = 244/408 (59%), Gaps = 23/408 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ E L L+ +FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MTENINLTDALKKYFGFDTFKGNQEAIIRNLLAGNDTFVLMPTGGGKSLCYQLPSLIMDG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ D+ SGK +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKSDILSGKT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVDFLKGVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKV+ D+ ++L +Q+ KSSFNRPNL+YEVR K ++ D+ +KA
Sbjct: 174 VIALTATATPKVRMDIQKNLGMQDAQEFKSSFNRPNLYYEVRSK--TNNIDRDIIKFIKA 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L A GI+ AYHAG++ R++ D ++ V+VAT
Sbjct: 232 NPGKSGIIYCLSRKKVEELAEVLQANGINARAYHAGMDSATRTANQDGFLKEDIDVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 348 ----KFMQGKPVAEQEIGKQL--LLETAAYAESSICRRKSLLHYFGEE 389
>gi|427788647|gb|JAA59775.1| Putative atp-dependent dna helicase [Rhipicephalus pulchellus]
Length = 924
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 174/439 (39%), Positives = 258/439 (58%), Gaps = 25/439 (5%)
Query: 7 AMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLS-GRDCFCLMPTGG 64
AM+ S +K H AL L FGH +R Q AI+AV G+D F MPTG
Sbjct: 9 AMEPASSVNPDKLSH---ALADALTRVFGHKSYRSGLQKKAIEAVAQCGQDVFVSMPTGA 65
Query: 65 GKSMCYQIPALAKP--GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122
GKS+C+Q+PA+ P + +VVSPLIALM +Q+ LK + E ++ST + + ++
Sbjct: 66 GKSLCFQLPAVVVPKDSVTVVVSPLIALMTDQLQKLKSLNVRAETINSTMSSLERQRVRR 125
Query: 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182
DL S P RLLYVTPE A+ F + L ++ G L+ +DEAHC+S WGHDFRP Y
Sbjct: 126 DLMSMSPETRLLYVTPEQVASEKFQAVLSALYKIGKLSRFVVDEAHCVSEWGHDFRPDYL 185
Query: 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDL 241
KL +R+ PDVP++ALTATA+ KV D++ L L+ P+ + K+S R NL+Y+V +K+
Sbjct: 186 KLGKVRDMFPDVPMVALTATASAKVFDDILVQLRLRQPVAIFKTSSFRANLYYDVEFKEA 245
Query: 242 LDDAYADLCSV-LKANGD----------TCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290
LD+ + +L + ++A G+ IVYC R C+E+S L++ G+ YH
Sbjct: 246 LDEPFENLKNFSIRALGEGWEEEDPKKRGSGIVYCRTRDACEEVSMKLTSLGLLTKPYHG 305
Query: 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350
G+ R D+W + ++ ATV+FGMG+DR VR V H+++P+S+ A+YQESGRAG
Sbjct: 306 GMKAAERKENQDEWTRGQVPIIAATVSFGMGVDRAMVRFVAHWSVPQSIPAYYQESGRAG 365
Query: 351 RDQLPSKSLLYYGMDDRRRMEFILSKNQ--SKNSQSFSTRERSSKKSISDFSQMVDYCEG 408
RD PS +YY DR+ + ++L +++ +K ++ E ++K F +M YCEG
Sbjct: 366 RDGRPSYCRIYYSRKDRKSITYLLKRDEQGAKTKRAKIVAEMATKA----FEKMASYCEG 421
Query: 409 SGCRRKKILESFGEQVLGC 427
CR + FG+ + GC
Sbjct: 422 MTCRHTVLCREFGDDLKGC 440
>gi|295133000|ref|YP_003583676.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981015|gb|ADF51480.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 731
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 174/403 (43%), Positives = 243/403 (60%), Gaps = 24/403 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q D + +++ D F +MPTGGGKS+CYQ+PAL + G +VVS
Sbjct: 8 LHKQLKKYFGFSQFKGLQEDVVASIVHKNDTFVIMPTGGGKSLCYQLPALIEEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A SS +VK ++ ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRGISSEYGVAHVLNSSLNKTEVK-QVKEDIING--VTKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALT 200
++ LK+ ++ +AIDEAHCIS WGHDFRP YR L + + ++PI+ALT
Sbjct: 125 TKEDYVDFLKEQK----ISFLAIDEAHCISEWGHDFRPEYRNLRQIIKRIGENIPIIALT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + K+SFNRPNL+YEVR K + AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGIPKAKTFKASFNRPNLYYEVRPK--TKNVDADIIRFVKQNNGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI+ YHAGL+ K RS D ++ VVVAT+AFGM
Sbjct: 239 GIIYCLSRKKVEELAQTLQVNGINAIPYHAGLDAKTRSKHQDMFLMEEVDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMSGK--- 355
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ ++V Y E S RRK IL FGE+
Sbjct: 356 -----PVAEQEVGHAL--LQEVVAYAETSISRRKFILHYFGEE 391
>gi|395645604|ref|ZP_10433464.1| ATP-dependent DNA helicase, RecQ family [Methanofollis liminatans
DSM 4140]
gi|395442344|gb|EJG07101.1| ATP-dependent DNA helicase, RecQ family [Methanofollis liminatans
DSM 4140]
Length = 506
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/394 (42%), Positives = 244/394 (61%), Gaps = 17/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ ++G+ FR Q + I +VL GRD ++ TG GKS+CYQ+PAL G+ LVVSPL+
Sbjct: 7 LLKKYWGYTSFRPHQREIIASVLEGRDTVAILATGSGKSLCYQVPALCLGGLTLVVSPLL 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L +GI+ + T + + +I L+ +LRLL+++PE PG ++
Sbjct: 67 SLMKDQVDDLNLRGISAAACTGALTHREREEIERQLEDN--ALRLLFLSPEKCMQPGLLT 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + R L+AIDEAHCIS+WGH FRP YR+LS L+ Y PDVPI+ALTATA P+V+
Sbjct: 125 YLVQFPVR----LIAIDEAHCISAWGHTFRPEYRQLSGLKRYFPDVPIVALTATAIPEVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ + L L +P +F+RPNL Y V K+ A L + + + IVYC +
Sbjct: 181 ADIAQHLGLSDPGEFVGTFDRPNLRYAVVPKE---KPMALLLACINRHRKESGIVYCSSK 237
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
T ++L+ L G S AAYHAGL R V DD++S R Q V ATVAFGMGID+ DVR
Sbjct: 238 KTAEDLARDLRKYGYSAAAYHAGLPTAVRERVQDDFLSGRVQTVCATVAFGMGIDKPDVR 297
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PK++E++YQE+GRAGRD L S+ LL Y + + ++ ++ +
Sbjct: 298 YVVHYDLPKNLESYYQETGRAGRDGLDSECLLLYSPGEYGAVRSMIERDTPDS------- 350
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R ++ ++ +M+ YCE + CRRK +L FGE
Sbjct: 351 -RQARIAVRKLDEMIGYCETTVCRRKYLLNYFGE 383
>gi|423280579|ref|ZP_17259491.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
gi|424665170|ref|ZP_18102206.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404575034|gb|EKA79779.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 616]
gi|404583786|gb|EKA88459.1| ATP-dependent DNA helicase RecQ [Bacteroides fragilis HMW 610]
Length = 726
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K + D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPK--TQNVDKDIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ D+++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDNFLMEKIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|313149548|ref|ZP_07811741.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313138315|gb|EFR55675.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 734
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q IQ +L G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 15 LTDQLKKYFGFDNFKGNQEPIIQNLLDGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 74
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 75 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 131
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 132 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 187
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K + D+ +K N +
Sbjct: 188 TATPKVQHDIQKNLGMVDAHVFKSSFNRPNLYYEVRPK--TQNVDKDIIKFIKNNPEKSG 245
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ AYHAG++ R+ D+++ + V+VAT+AFGMG
Sbjct: 246 IIYCLSRKKVEELAEILQANGINARAYHAGMDSATRTQNQDNFLMEKIDVIVATIAFGMG 305
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 306 IDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 357
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 358 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 397
>gi|408491728|ref|YP_006868097.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408469003|gb|AFU69347.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 728
Score = 321 bits (822), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 173/407 (42%), Positives = 246/407 (60%), Gaps = 24/407 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ L + L+ +FG +F+ Q I++++S +D F +MPTGGGKS+CYQ+PAL K G
Sbjct: 2 EQINLHQELKKYFGFNEFKGLQEQVIKSIISNKDTFVIMPTGGGKSLCYQLPALIKEGTA 61
Query: 82 LVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
+VVSPLIALM+NQV ++ G+A SS QVK ++ ED+ SG +L+YV
Sbjct: 62 IVVSPLIALMKNQVDAIRNISEHHGVAHVLNSSLNKTQVK-QVKEDISSG--ITKLVYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE ++ LK + ++ +AIDEAHCIS WGHDFRP YR L ++ + ++PI
Sbjct: 119 PESLTKTEYIEFLKGEN----ISFLAIDEAHCISEWGHDFRPEYRNLKNIIERIGENIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ LTATA PKVQ+D++++L + N K SFNRPNL+YE+R K DD +D+ +K N
Sbjct: 175 IGLTATATPKVQEDILKNLRIPNSKTFKDSFNRPNLYYEIRPK--TDDVDSDIIKFVKKN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++LS L G+ YHAGL+ K+RS D ++ VVVAT+
Sbjct: 233 SGKSGIIYCLSRKRVEQLSQALQVNGVKAVPYHAGLDAKSRSRHQDMFLMEDIDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD + YY D ++E +S
Sbjct: 293 AFGMGIDKPDVRFVVHNDIPKSIESYYQETGRAGRDGGEGHCVAYYNHKDIEKLEKFMS- 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + +E + +V + E S RRK IL FGE+
Sbjct: 352 -----GKPIAEQEIGH----ALLQDVVAFAESSISRRKYILHYFGEE 389
>gi|291614340|ref|YP_003524497.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
gi|291584452|gb|ADE12110.1| ATP-dependent DNA helicase RecQ [Sideroxydans lithotrophicus ES-1]
Length = 614
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 167/400 (41%), Positives = 238/400 (59%), Gaps = 14/400 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+A FR Q ++ V++G D LMPTGGGKS+CYQIPAL + G+ ++VSPL
Sbjct: 8 QILRDTFGYASFRGAQQAIVEHVVAGGDALVLMPTGGGKSLCYQIPALMRKGVGIIVSPL 67
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV LK+ G++ FL+S+ + ++ L + L+LLYV PE T GF+
Sbjct: 68 IALMQDQVDALKQLGVSAAFLNSSLEAEEAREVSRQL--MRCELKLLYVAPERLLTEGFL 125
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L++++ + L AIDEAHC+S WGHDFRP YR L+ L P VP +ALTATA
Sbjct: 126 NLLERLNQDNNIALFAIDEAHCVSQWGHDFRPEYRGLTVLHERFPSVPRIALTATADAPT 185
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCL 266
+ +V+E L L+ SSF+RPN+ Y V K D+A L L+ + D IVYCL
Sbjct: 186 RSEVVERLSLEQAEQFVSSFDRPNIRYRVTLK---DNARKQLQDFLETEHPDDAGIVYCL 242
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E +A+L G YHAGL+ RS ++ ++VATVAFGMGID+ +
Sbjct: 243 SRKKVEETAAWLKEQGWDALPYHAGLDAAVRSKNQKKFLREEGVIMVATVAFGMGIDKPN 302
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D M +L +
Sbjct: 303 VRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVSMRQMLLSGDAP------ 356
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
E + + ++ +CE + CR + IL FGE+ G
Sbjct: 357 --EERKRVELQKLDALLGFCESTACRHQTILRYFGEEHPG 394
>gi|154494364|ref|ZP_02033684.1| hypothetical protein PARMER_03719 [Parabacteroides merdae ATCC
43184]
gi|154085808|gb|EDN84853.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae ATCC 43184]
Length = 729
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 168/410 (40%), Positives = 248/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 4 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 63
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ +G+ +LLY
Sbjct: 64 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRNGRT--KLLY 120
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 121 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 176
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 177 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 234
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 235 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 294
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 295 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 350
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 351 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 394
>gi|295133854|ref|YP_003584530.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
gi|294981869|gb|ADF52334.1| ATP-dependent DNA helicase RecQ [Zunongwangia profunda SM-A87]
Length = 702
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 241/401 (60%), Gaps = 23/401 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK+ L+ L+ +FG+ FR Q IQ++ G+D +MPTGGGKS+CYQ+PA+ P +
Sbjct: 2 EKQQLLNTLKEYFGYDSFRPLQEKIIQSIFDGKDNLVIMPTGGGKSICYQLPAILLPKLT 61
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+V+SPLIALM++QV GLK GI EFL+S+Q + + I++ +D K L+LLYV PE
Sbjct: 62 IVISPLIALMKDQVDGLKANGIKAEFLNSSQQVADQESIFQKID--KNELKLLYVAPE-- 117
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L + + ++L+AIDEAHCISSWGHDFRP+Y +L L+ + PI+ALTA
Sbjct: 118 ----SLQILDRFLTEENISLIAIDEAHCISSWGHDFRPAYTQLGYLKKRFSNTPIIALTA 173
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ + L + + SSF+R NL EVR + + +K+
Sbjct: 174 TADKATRHDICQQLNIPDAKKHISSFDRKNLSLEVRQGI---KRFEQIIKFIKSRPSESG 230
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L G+ AYHAGL + R S+ DD+I+ + +++ ATVAFGMG
Sbjct: 231 IIYCLSRKNTEELAEKLQQKGLDAKAYHAGLKHEERESIQDDFINDKTEIICATVAFGMG 290
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ ++R V H+N+PK++E +YQE GRAGRD L S +LL++ D ++
Sbjct: 291 IDKSNIRWVIHYNMPKNLEGYYQEIGRAGRDGLSSDTLLFHSYADVVQL----------- 339
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q F+ ++ ++ +M Y E CRRK +L FGE
Sbjct: 340 -QRFAENTKNKDIQVAKLDRMKQYAEALTCRRKILLSYFGE 379
>gi|121603031|ref|YP_980360.1| ATP-dependent DNA helicase RecQ [Polaromonas naphthalenivorans CJ2]
gi|120592000|gb|ABM35439.1| ATP-dependent DNA helicase RecQ [Polaromonas naphthalenivorans CJ2]
Length = 639
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 237/402 (58%), Gaps = 23/402 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP----GIVLVVSPLIA 89
FG++ FR Q ++ V++G D LMPTGGGKS+CYQIPA+A+ G+ +V+SPLIA
Sbjct: 29 FGYSDFRGPQQAIVEHVIAGGDALVLMPTGGGKSLCYQIPAIARQNAGHGVTIVISPLIA 88
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM +QV L E G++ FL+STQT + +++ + L + L LLY PE TP
Sbjct: 89 LMHDQVGALLEAGVSAAFLNSTQTFEESSQLEKQLL--RNELTLLYAAPERINTPRMKGL 146
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L +H RGLL+L AIDEAHC+S WGHDFRP YR LS L PDVP +ALTATA ++
Sbjct: 147 LASLHERGLLSLFAIDEAHCVSQWGHDFRPEYRSLSLLHETFPDVPRMALTATADALTRQ 206
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLER 268
D++E L L++ + SSF+RPN+ Y + K DA L ++A + IVYC R
Sbjct: 207 DMIERLKLEDARLFLSSFDRPNIRYTIVEK---TDATRQLLRFIQAEHHGEAGIVYCQSR 263
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E++ L GI AYHAGL+ K R D ++ V+VAT+AFGMGID+ DVR
Sbjct: 264 KRVEEIAGMLEDAGIKAMAYHAGLDAKLRQQRQDRFLREDGCVMVATIAFGMGIDKPDVR 323
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKNSQSF 385
V H ++PK++E +YQE+GRAGRD LP+ + + YG+ D +RRM S+ F
Sbjct: 324 FVAHLDMPKNIEGYYQETGRAGRDGLPADAWMVYGLQDVVNQRRM----IDTSEVASEEF 379
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
R ++ EG+ CRR +L FGE C
Sbjct: 380 KAVMRGK------LDALLTLAEGTRCRRVSLLGYFGEASEPC 415
>gi|399026913|ref|ZP_10728551.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
gi|398075677|gb|EJL66783.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. CF136]
Length = 731
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 244/401 (60%), Gaps = 25/401 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I ++L+ ++ F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVITSILNKKNTFVIMPTGGGKSLCYQLPALIQDGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEIAQVKKDITSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+ + ++ VAIDEAHCIS WGHDFRP YR L ++ L VPI+ LTATA
Sbjct: 127 EEYVAFLQSVP----ISFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLGSVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K + +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMSDANTFKASFNRPNLYYEVRTK--TKNIESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVETIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNS 382
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE 360
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
F+ ++V Y E S RRK +L FGE+
Sbjct: 361 IGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|406883341|gb|EKD30951.1| hypothetical protein ACD_77C00439G0002 [uncultured bacterium]
Length = 733
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ FG F+ +Q + I+ ++ G D F LMPTGGGKS+CYQ+PAL PG+ ++
Sbjct: 6 EFLHTQLKEFFGFDSFKGQQEEVIKHLIDGNDSFVLMPTGGGKSLCYQLPALVMPGVAII 65
Query: 84 VSPLIALMENQVIGLK-----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
+SPLIALM+NQV ++ +GIA SS Q++ ++ EDL SG+ +LLYV P
Sbjct: 66 ISPLIALMKNQVDAIRGFVEEREGIAHFLNSSLNKAQIQ-EVKEDLMSGQT--KLLYVAP 122
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E ++ LK++ ++ A+DEAHCIS WGHDFRP YR++ + + P++A
Sbjct: 123 ESLTKEENIAFLKQL----TISFYAVDEAHCISEWGHDFRPEYRRIYPIVQEIGKAPVIA 178
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + +V K+SFNRPNL+YE+R+K + ++ +KAN
Sbjct: 179 LTATATPKVQNDIQKNLGMSDAMVFKTSFNRPNLYYEIRHKA---NTEREIIRFIKANEG 235
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R ++++ L GI YHAGL+ R+S D ++ V+VAT+AF
Sbjct: 236 KSGIIYCLSRKKVEDVAQLLVVNGIKALPYHAGLDAYTRASNQDSFLMEGVDVIVATIAF 295
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H++IPKS+E++YQE+GR+GRD + + +Y D +++E
Sbjct: 296 GMGIDKPDVRFVIHYDIPKSLESYYQETGRSGRDGGEGQCIAFYSYKDIQKLE------- 348
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K Q E+ + + + V Y E S CRRK +L FGE
Sbjct: 349 -KFMQGKPISEQEIGRQL--LMETVSYAESSICRRKVLLNYFGE 389
>gi|307566216|ref|ZP_07628664.1| ATP-dependent DNA helicase RecQ [Prevotella amnii CRIS 21A-A]
gi|307345074|gb|EFN90463.1| ATP-dependent DNA helicase RecQ [Prevotella amnii CRIS 21A-A]
Length = 727
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 237/401 (59%), Gaps = 19/401 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ FG F+ +Q I +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LIEKLKHFFGFDNFKGEQESIILHLLAGNDIFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQV---IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E FL+S+ + D+ GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVVNGISETDGVAHFLNSSLKKAEIDSVRNDIRVGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
++ LK I ++ AIDEAHCIS WGHDFRP YRK+ + + + PI+ALTAT
Sbjct: 125 KEDNIAFLKTIK----VSFYAIDEAHCISEWGHDFRPEYRKIRTAIDEIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL ++ L KSSFNRPNL+YEVR+K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEGCLEFKSSFNRPNLYYEVRFKKNEDDTNKQIIRFIKQHSGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I AAYHAGL+ + RS D ++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILIANDIKAAAYHAGLDSETRSKTQDQFLMEDIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y +D +++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIAFYSRNDLKKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 353 EGKPIAEQDIGRQL--LQETEAYAESSVCRRKLLLHYFGEE 391
>gi|154324014|ref|XP_001561321.1| hypothetical protein BC1G_00406 [Botryotinia fuckeliana B05.10]
Length = 1677
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 167/407 (41%), Positives = 240/407 (58%), Gaps = 20/407 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLV 83
K L+ F FR QL+AI A L+GRD F LMPTGGGKS+CYQ+PA+ + G+ +V
Sbjct: 802 KALKDRFRLKGFRHNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSGKTKGVTIV 861
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPEL- 140
VSPL+ALM +QV L + I +S T + + +++ L+ KP + LLYVTPE+
Sbjct: 862 VSPLLALMHDQVDHLHKLRIQAYLFNSESTQETRQQLFNGLNERKPEQFVELLYVTPEMI 921
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ SKL ++++ L + IDEAHC+S WGHDFRP Y+ L LR P VP +ALT
Sbjct: 922 NKSNAIQSKLDDLYAKKRLARIVIDEAHCVSQWGHDFRPDYKNLHELRGRYPGVPFIALT 981
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDA---YADLCSVLKAN- 256
ATA +V+KDV+ +L +QN LK SFNRPN++YEVR K ++++ +L +
Sbjct: 982 ATATERVKKDVIHNLGMQNCEQLKQSFNRPNIYYEVRRKTGKGSTAAMFSEITKMLSVDY 1041
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YCL R C+E++ L GI +HA + + + W QVVVAT+
Sbjct: 1042 KNQSGIIYCLSRDNCEEVAKKLREQGIRAHHFHAHMTPEEKKDTQHKWQIGSIQVVVATI 1101
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+++VR V H+ +PK++E +YQE+GRAGRD P+ LYYG D + + ++ K
Sbjct: 1102 AFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAGRDGKPAACFLYYGFQDSQIYKKMIEK 1161
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ T +R MV +C+ CRR ++L FGE
Sbjct: 1162 GEG--GPDVKTEQRQM------LEAMVRFCDNRIDCRRVQLLRYFGE 1200
>gi|150008998|ref|YP_001303741.1| ATP-dependent DNA helicase recQ [Parabacteroides distasonis ATCC
8503]
gi|255014829|ref|ZP_05286955.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_1_7]
gi|256841001|ref|ZP_05546508.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D13]
gi|262383888|ref|ZP_06077024.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_33B]
gi|298375770|ref|ZP_06985726.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_19]
gi|301312048|ref|ZP_07217970.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 20_3]
gi|410102762|ref|ZP_11297687.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D25]
gi|423330257|ref|ZP_17308041.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL03T12C09]
gi|423339397|ref|ZP_17317138.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL09T03C24]
gi|149937422|gb|ABR44119.1| ATP-dependent DNA helicase recQ [Parabacteroides distasonis ATCC
8503]
gi|256736844|gb|EEU50171.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D13]
gi|262294786|gb|EEY82718.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_33B]
gi|298266807|gb|EFI08464.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_19]
gi|300830150|gb|EFK60798.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 20_3]
gi|409230778|gb|EKN23639.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL09T03C24]
gi|409231873|gb|EKN24721.1| ATP-dependent DNA helicase RecQ [Parabacteroides distasonis
CL03T12C09]
gi|409237889|gb|EKN30684.1| ATP-dependent DNA helicase RecQ [Parabacteroides sp. D25]
Length = 726
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 246/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L HFG F+ Q I+ VL+G+D F LMPTGGGKS+CYQ+P++ G
Sbjct: 1 MAKKDHLTEELNRHFGFGTFKGNQKAIIENVLAGKDTFVLMPTGGGKSLCYQLPSILMEG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ D+ SG+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKSDILSGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L+++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVDFLRQVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YEVR K D ++ +KA
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDATVFKSSFNRSNLYYEVRPKGTNIDR--EIIKYIKA 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N IVYCL R +E + L A GI YHAG++ + RS+ D ++ + V+VAT
Sbjct: 232 NEGKSGIVYCLSRKKVEEFADILKANGIKALPYHAGMDSQVRSANQDAFLMEQADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 348 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 391
>gi|423346935|ref|ZP_17324622.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
gi|409218596|gb|EKN11564.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL03T12C32]
Length = 726
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 168/410 (40%), Positives = 248/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ +G+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRNGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 232 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 348 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 391
>gi|405951075|gb|EKC19019.1| ATP-dependent DNA helicase Q5 [Crassostrea gigas]
Length = 1138
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 174/428 (40%), Positives = 254/428 (59%), Gaps = 21/428 (4%)
Query: 24 EALVKLLRWHFGHAQFR-DKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIV 81
E + ++L+ F H F+ D Q A++ V+ G+ D F MPTG GKS+CYQ+PA+A PGI
Sbjct: 3 EKMYEVLKKIFKHDDFKSDLQKRAVKCVVEGKNDVFISMPTGAGKSLCYQLPAVASPGIT 62
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLIALM++Q+ L+ I E ++S T + + K+ EDL+ KP +LLY+TPE
Sbjct: 63 VVVSPLIALMQDQLEHLEILKIPAETINSKMTTKQRAKVVEDLNRAKPKTKLLYITPEQA 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ G + ++ + R +L +DEAHC+S WGHDFRP Y KL S R +P+VP +ALTA
Sbjct: 123 ASEGCRTLIEGLVKRQMLTYFVVDEAHCVSQWGHDFRPDYLKLGSFRKIMPNVPCVALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT 259
TA + +D+++ L L+N L K+S R N++Y++ KD++ D Y DL L + G
Sbjct: 183 TATAQTVEDIVQQLKLKNQLTKFKTSCFRSNIYYDIVMKDVVHDPYEDLMKFGLTSLGRE 242
Query: 260 -----------------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLD 302
C IVYC R C E++++L+ GI YHAGL R +V
Sbjct: 243 MFTKEDNSLIENWSEFGCGIVYCRTRDACAEVASHLTRKGILTKPYHAGLKADVRETVQS 302
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
DW+ R V+ AT++FGMG+D+ +VR V H+ IPKSM +YQESGRAGRD S LYY
Sbjct: 303 DWMEGRFPVIAATISFGMGVDKPNVRFVAHWTIPKSMSGYYQESGRAGRDGAQSFCRLYY 362
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + F+++K SK +++ ++ K + S F +V YCE CR I + FG+
Sbjct: 363 SKREMDTVAFLINKENSKFTKNTEAQKIRKKAAESGFDAIVKYCENLSCRHWSIAKYFGD 422
Query: 423 QVLGCVAS 430
+ C S
Sbjct: 423 EKPECNKS 430
>gi|423725451|ref|ZP_17699588.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
gi|409234575|gb|EKN27403.1| ATP-dependent DNA helicase RecQ [Parabacteroides merdae CL09T00C40]
Length = 726
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 168/410 (40%), Positives = 248/410 (60%), Gaps = 23/410 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +K+ L + L+ HFG F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAKKDNLTEELKKHFGFDTFKGNQRAIIENVLAGNDTFVLMPTGGGKSLCYQLPSLMMQG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ ++ +D+ +G+ +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKSAIDQVKDDIRNGRT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + L++++ ++ A+DEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKDENVEFLRQVN----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKRP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNR NL+YE+R K D ++ +K+
Sbjct: 174 LIALTATATPKVQHDIQKNLGMIDASVFKSSFNRSNLYYEIRPKTANIDR--EIIKYIKS 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +E + L A GI YHAG++ + RSS D ++ + V+VAT
Sbjct: 232 NEGKSGIIYCLSRKKVEEFADILKANGIKALPYHAGMDSQQRSSNQDAFLMEKADVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAYKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
K Q E+ K + + Y E S CRRK +L FGE+ L
Sbjct: 348 ----KFMQGKPVAEQEIGKQL--LLETAAYAETSVCRRKVLLHYFGEEYL 391
>gi|189462633|ref|ZP_03011418.1| hypothetical protein BACCOP_03325 [Bacteroides coprocola DSM 17136]
gi|189430794|gb|EDU99778.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 607
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 240/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K L+ +FG+ QFR Q + I +L +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 2 ILKTLKSYFGYTQFRPLQEEIITQILHKKDTLVLMPTGGGKSICYQLPALLMEGTAIVVS 61
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GI L+ST I + G+ ++LLY++PE L
Sbjct: 62 PLISLMKDQVESLQANGIIARALNSTNDETTDANIRFECRQGR--VKLLYISPERLMGEV 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ K +I +L AIDEAHCIS WGHDFRP Y +L LR PDVP++ALTATA
Sbjct: 120 NFLMKDIRI------SLFAIDEAHCISQWGHDFRPEYTQLKILRQQFPDVPVVALTATAD 173
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D++ L +++P + SSF+RPNL +V+ + + + + I+Y
Sbjct: 174 KITRQDIIRQLAMKDPQIFISSFDRPNLSLDVKRGFQQKEKMRTIFDFIARHRGESGIIY 233
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ ++++ L GI+ A YHAGL+ AR + DD+I+ R QVV AT+AFGMGID+
Sbjct: 234 CMSRSKTEKVAEMLEEHGIATAVYHAGLSTAAREAAQDDFINDRVQVVCATIAFGMGIDK 293
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD LPS +LL+Y D +LSK
Sbjct: 294 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFGDI----VLLSK-------- 341
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+ + ++ ++M Y E CRR+ +L FGE
Sbjct: 342 FAAESNQQEINMEKLNRMQQYAETDICRRRILLNYFGE 379
>gi|226292234|gb|EEH47654.1| ATP-dependent DNA helicase Q1 [Paracoccidioides brasiliensis Pb18]
Length = 1550
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 173/402 (43%), Positives = 239/402 (59%), Gaps = 22/402 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
FG + FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ G + +V+SPL++
Sbjct: 692 FGLSGFRLNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVNSGTTKGVTVVISPLLS 751
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS----LRLLYVTPELTATPG 145
LME+QV LKE I L+ + K+ IY L P+ ++LLYVTPE+ G
Sbjct: 752 LMEDQVAHLKELHIQAFLLNGDVNKEHKSLIYSAL--ANPNVEKLIQLLYVTPEMVNKNG 809
Query: 146 -FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ L ++HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA
Sbjct: 810 ALLGALSRLHSRKKLARIVIDEAHCVSQWGHDFRPDYKELGNTRAKFPGIPLMALTATAT 869
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
V+ DV+ +L ++N V SFNRPNL YEVR K + + + + I+
Sbjct: 870 ENVKIDVIHNLGMRNAEVFVQSFNRPNLTYEVRPKPKNTNVIESIAETINESYSGQAGII 929
Query: 264 YCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YCL R +C++++A L I A YHAGL + R S+ DW S + V+VAT+AFGMGI
Sbjct: 930 YCLSRRSCEKVAAQLRDKYKIKAAHYHAGLPSEERISIQRDWQSGKYNVIVATIAFGMGI 989
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H +PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 990 DKADVRFVIHHTMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTGPLRHMIDKGEG--- 1046
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
SF ++R + +V +CE S CRR +IL F E+
Sbjct: 1047 -SFEQKKRQRQM----LRHVVQFCENESDCRRVQILAYFNEK 1083
>gi|212710158|ref|ZP_03318286.1| hypothetical protein PROVALCAL_01212 [Providencia alcalifaciens DSM
30120]
gi|212687157|gb|EEB46685.1| hypothetical protein PROVALCAL_01212 [Providencia alcalifaciens DSM
30120]
Length = 608
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 175/391 (44%), Positives = 237/391 (60%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I +L GRDC LMPTGGGKS+CYQ+PAL K GI LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKQGITLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ L+S+QT + +I E GK ++LLYV PE T F+ +L+
Sbjct: 81 QVDQLKLHGVEAACLNSSQTSLEQRQIMEQCTQGK--IKLLYVAPERLLTDYFIQQLESW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 D----IALLAVDEAHCISQWGHDFRPEYRSLGQLRRALPNVPVMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLELNDPLIHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKSGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL + R V D + Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLENAQREWVQDAFQKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|422007125|ref|ZP_16354111.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
gi|414097015|gb|EKT58670.1| ATP-dependent DNA helicase RecQ [Providencia rettgeri Dmel1]
Length = 608
Score = 320 bits (821), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 175/391 (44%), Positives = 237/391 (60%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I A+L RDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGAILDKRDCLVLMPTGGGKSLCYQVPALVKEGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ L+S+QT Q + +I E G+ ++LLYV PE T F+S+L
Sbjct: 81 QVDQLRLHGVNAACLNSSQTSQEQRQIMELCSQGE--IKLLYVAPERLLTDYFLSQLAGW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 N----ITLLAVDEAHCISQWGHDFRPEYRALGQLRQSLPNVPVMALTATADETTRADIIR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L PLV SSF+RPN+ Y + +YK L L +K IVYC R+
Sbjct: 195 LLELHEPLVHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGKAGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL R V D ++ QVVVATVAFGMGI++ +VR V
Sbjct: 250 EETTERLQKRGLSVAAYHAGLEAAQREWVQDAFLKDNLQVVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|402495443|ref|ZP_10842169.1| ATP-dependent DNA helicase RecQ [Aquimarina agarilytica ZC1]
Length = 702
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 245/397 (61%), Gaps = 23/397 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG+++FR +Q + I A+ G+D +MPTGGGKS+CYQ+PA G+ LV+S
Sbjct: 9 LYQNLKDFFGYSEFRPQQKEIISAIFKGQDNLVIMPTGGGKSICYQLPATMLSGLTLVIS 68
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV GL+ GI F++S+Q + + I+ + + + +LLYV PE
Sbjct: 69 PLIALMKDQVDGLRANGIGAAFINSSQAAEEQHTIFNTILTKET--KLLYVAPE------ 120
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S+L+ I ++ L+L+AIDEAHCIS+WGHDFRP+Y +L L+N P PI+ALTATA
Sbjct: 121 SLSQLEGILNQVDLSLIAIDEAHCISAWGHDFRPAYTQLGYLKNRFPTTPIIALTATADK 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ + L L N + SSF+RPNL EVR D + + + + I+YC
Sbjct: 181 ATREDISKQLNLNNATLHLSSFDRPNLSLEVRPGI---DRVKKILQFVDDHPNDSGIIYC 237
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T + L+ L + G AYHAGL R V +++I+ + Q+V ATVAFGMGID+
Sbjct: 238 LSRKTTESLAEKLESAGFKAKAYHAGLGHHIREQVQNEFINDQLQIVCATVAFGMGIDKS 297
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK++E +YQE GRAGRD + SK++L++ D ++ Q F
Sbjct: 298 NVRWVIHYNLPKNIEGYYQEIGRAGRDGVASKTILFHSYADVVQL------------QQF 345
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+T +++ ++ +M Y + CRRK +L FGE
Sbjct: 346 ATNSGNTEVQLAKLDRMQQYADALSCRRKVLLSYFGE 382
>gi|253991584|ref|YP_003042940.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
gi|211638462|emb|CAR67084.1| atp-dependent dna helicase recq (ec 3.6.1.-) [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253783034|emb|CAQ86199.1| ATP-dependent DNA helicase [Photorhabdus asymbiotica]
Length = 608
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/397 (42%), Positives = 237/397 (59%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I +L GRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLRETFGYQQFRPGQQQVINTILEGRDCLVIMPTGGGKSLCYQIPALIQEGVTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A + L+STQ + + + G ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAADCLNSTQAREQQIDVIRRCRQG--MVKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++A+DEAHCIS WGHDFRP YR L LR P +P++ALTATA
Sbjct: 133 EQLLEWQP----AILAVDEAHCISQWGHDFRPEYRALGQLRQRFPTLPVIALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L NPL+ SSF+RPN+ Y + +YK L L ++A I+YC
Sbjct: 189 RNDIVRLLNLNNPLIHISSFDRPNIRYTLIEKYKPL-----DQLWLFIRAQKGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R+ +E S L G+S A YHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRSKVEETSERLQKRGLSVAPYHAGLDNNQRARVQDAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HFNIP+++E++YQE+GRAGRD LP++++L+Y D + L + Q
Sbjct: 304 NVRFVVHFNIPRNIESYYQETGRAGRDGLPAEAVLFYDPADMVWLRRCLEEKPVGTQQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|336171234|ref|YP_004578372.1| RecQ family ATP-dependent DNA helicase [Lacinutrix sp. 5H-3-7-4]
gi|334725806|gb|AEG99943.1| ATP-dependent DNA helicase, RecQ family [Lacinutrix sp. 5H-3-7-4]
Length = 730
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 242/399 (60%), Gaps = 24/399 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG ++F+ Q I+++L ++ F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 9 LKKHFGFSEFKGLQEKVIESILDKKNTFVIMPTGGGKSLCYQLPALMQEGTAIVVSPLIA 68
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS +VK ++ ED+ +G +LLYV PE
Sbjct: 69 LMKNQVDAIRGVSDEHGIAHVLNSSLNKTEVK-QVKEDITNG--ITKLLYVAPESLTKEE 125
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D +PI+ LTATA
Sbjct: 126 NVEFLRGVK----ISFMAVDEAHCISEWGHDFRPEYRNLRTIIQRIGDNIPIIGLTATAT 181
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YEVR K D+ D+ +K N IVY
Sbjct: 182 PKVQEDILKNLRMTDAKTFKASFNRPNLYYEVRPKTKTVDS--DIIRFVKQNSGKTGIVY 239
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K R+ D ++ VVVAT+AFGMGID+
Sbjct: 240 CLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATIAFGMGIDK 299
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 300 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYSYKDIEKLEKFMSGK------- 352
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ ++V +CE S RRK IL FGE+
Sbjct: 353 -PVAEQEIGHAL--LQEVVAFCETSMSRRKFILHYFGEE 388
>gi|366993190|ref|XP_003676360.1| hypothetical protein NCAS_0D04180 [Naumovozyma castellii CBS 4309]
gi|342302226|emb|CCC69999.1| hypothetical protein NCAS_0D04180 [Naumovozyma castellii CBS 4309]
Length = 1344
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 162/391 (41%), Positives = 243/391 (62%), Gaps = 18/391 (4%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94
FR QL+A+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G +V+SPLI+LM++Q
Sbjct: 587 FRSNQLEAVDATLSGKDVFVLMPTGGGKSLCYQLPAVVKSGKTKGTTIVISPLISLMQDQ 646
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L K I SS T + + + + G L L+Y++PE+ +A+ + K+
Sbjct: 647 VEHLLAKDIKACMFSSKGTAEQRKQTFNLFIHG--LLDLIYISPEMISASEQCKRAISKL 704
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
HS G L + +DEAHC+S+WGHDFRP Y++L + PDVP++ALTATA+ +V+ D++
Sbjct: 705 HSDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPMIALTATASEQVRMDIIH 764
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCD 272
+L L++P+ LK SFNR NL+YEV+ K +A ++ +K + I+YC + +C+
Sbjct: 765 NLELKDPVFLKQSFNRTNLYYEVKKK--TKNAIFEIIDSIKTKFRNQTGIIYCHSKNSCE 822
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ S L GI CA YHAG+ R V W + QV+ ATVAFGMGID+ DVR V H
Sbjct: 823 QTSDKLQRQGIKCAFYHAGMEPDDRLKVQKAWQADEIQVICATVAFGMGIDKPDVRFVYH 882
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
F +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++ + Q +
Sbjct: 883 FTVPRTLEGYYQETGRAGRDGKFSYCITYFSFRDVRTMQTMIQKDENLDRQ-------NK 935
Query: 393 KKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+K ++ Q++ YC+ + CRRK +L F E
Sbjct: 936 EKHLNKLQQVMSYCDNMTDCRRKLVLSYFNE 966
>gi|386820490|ref|ZP_10107706.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
gi|386425596|gb|EIJ39426.1| ATP-dependent DNA helicase RecQ [Joostella marina DSM 19592]
Length = 733
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 242/399 (60%), Gaps = 24/399 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q I+ +++ ++ F +MPTGGGKS+CYQ+PAL K G +V+SPLIA
Sbjct: 12 LKQYFGFSQFKGLQEKVIKNIINDQNTFVIMPTGGGKSLCYQLPALVKDGTAIVISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ KGIA SS +V+ ++ ED+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSNKGIAHVLNSSLNKTEVR-QVKEDITNG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ + + ++ VA+DEAHCIS WGHDFRP YR + ++ L D+PI+ALTATA
Sbjct: 129 YVEFFRTVK----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIQRLGDDIPIIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + V K+SFNRPNL+YEVR K + AD+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGVNSAEVYKASFNRPNLYYEVRPK--TKNVDADIIRFVKQNEGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+ YHAGL+ K R+ D ++ +VVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQTLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDTDIVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGK------- 355
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ MV Y E S RRK IL FGE+
Sbjct: 356 -PVAEQEVGHAL--LQDMVAYAETSMSRRKYILHYFGEE 391
>gi|349687060|ref|ZP_08898202.1| ATP-dependent DNA helicase RecQ [Gluconacetobacter oboediens
174Bp2]
Length = 611
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 240/391 (61%), Gaps = 17/391 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 19 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S Q ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 79 QVAALRQLGVNAGALHSEQEADDAARVRADLMAGR--LDILYVSPERLLSPGMLERLGRL 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P+VP +ALTATA + + D+++
Sbjct: 137 ----TLSVIAIDEAHCISAWGHEFRPEYRELAALPQHFPNVPRIALTATADARTRSDILD 192
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L +L + +IVYC R+ +
Sbjct: 193 ALAMPDATVLKASFHRPNLDIAVRPKT---SELRQLTGILDRHRGAASIVYCGSRSKTER 249
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G + +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 250 IARSLAGKGYAALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 309
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + +Q R
Sbjct: 310 DMPSSPEGYYQQIGRAGRDGAQAETVLLYGGDDMARARYWLEQSNAPEAQKRIMSAR--- 366
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
M+ E +GCR + +L FGE++
Sbjct: 367 -----LEAMIALTETTGCRTQALLSCFGEEL 392
>gi|433678735|ref|ZP_20510560.1| DNA helicase [Xanthomonas translucens pv. translucens DSM 18974]
gi|430816172|emb|CCP41071.1| DNA helicase [Xanthomonas translucens pv. translucens DSM 18974]
Length = 602
Score = 320 bits (821), Expect = 8e-85, Method: Compositional matrix adjust.
Identities = 165/389 (42%), Positives = 240/389 (61%), Gaps = 17/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q D ++ V +G+D LMPTGGGKS+CYQIP+L + G LV+SPLIALM++
Sbjct: 13 FGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGLVISPLIALMQD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ E+L+ST + ++ +L +G+ L LLYV PE TP F+S L+
Sbjct: 73 QVEALRQLGVRAEYLNSTLDAETAQRVERELLAGE--LDLLYVAPERLLTPRFLSLLE-- 128
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
R + L AIDEAHC+S WGHDFRP YR+L+ L P +P +ALTATA P Q+++ E
Sbjct: 129 --RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPPTQREIAE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L SSF+RPN+ Y V KD ++ L L+A+ + IVYC+ R +E
Sbjct: 187 RLDLTQARHFVSSFDRPNIRYTVVQKD---NSKRQLLDFLRAHRGSAGIVYCMSRRKVEE 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ +L+ G++ YHAGL + R+ ++ V+ AT+AFGMGID+ DVR V H
Sbjct: 244 TAEFLAKEGLNALPYHAGLPAEVRADNQRRFLREDGIVMCATIAFGMGIDKPDVRFVAHT 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++PKS+E +YQE+GRAGRD +++ L YG+ D +L K + ++ R+R +
Sbjct: 304 DLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLKQMIEKGEAGEDRKRVER 358
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + Q++ YCE CRR+ +L FGE
Sbjct: 359 RKL---DQLLGYCESMQCRRQVLLAGFGE 384
>gi|296115204|ref|ZP_06833845.1| putative ATP-dependent DNA helicase recQ [Gluconacetobacter
hansenii ATCC 23769]
gi|295978305|gb|EFG85042.1| putative ATP-dependent DNA helicase recQ [Gluconacetobacter
hansenii ATCC 23769]
Length = 623
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 165/391 (42%), Positives = 237/391 (60%), Gaps = 17/391 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++G+DC LMPTGGGKS+CYQ+PAL++PG LV+SPLIALM++
Sbjct: 28 FGFPDFRGLQQQAVDQVMAGQDCLVLMPTGGGKSVCYQVPALSRPGTGLVISPLIALMDD 87
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S Q ++ DL SG+ L +LYV+PE +PG + +L
Sbjct: 88 QVAALRQLGVNAGALHSEQEADDAARVRSDLASGR--LDILYVSPERLLSPGMLERL--- 142
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
SR L+++AIDEAHCIS+WGH+FRP YR L++L ++ P VP +ALTATA P+ Q D++E
Sbjct: 143 -SRLTLSVIAIDEAHCISAWGHEFRPEYRALATLPDHFPGVPRIALTATADPRTQSDILE 201
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L +L + IVYC R +
Sbjct: 202 ALAMPDATVLKASFHRPNLDVVVRPK---TSELRQLVGILDRHKGEAGIVYCGSRNKTER 258
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L G A+HAGL+ + + L + S ++VAT+AFGMGIDR DVR V H
Sbjct: 259 IAKSLCDRGYVALAFHAGLSPVEKRAALMRFRSGEAVIIVATIAFGMGIDRPDVRTVVHL 318
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + +Q R
Sbjct: 319 DMPSSPEGYYQQIGRAGRDGEAAETVLLYGGDDIARARYWLEQSNAPEAQRRIMSAR--- 375
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
M+ E +GCR + +L FGE++
Sbjct: 376 -----LEAMIALAETTGCRTEALLACFGERL 401
>gi|374328402|ref|YP_005078586.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Pseudovibrio sp.
FO-BEG1]
gi|359341190|gb|AEV34564.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Pseudovibrio sp.
FO-BEG1]
Length = 612
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 242/400 (60%), Gaps = 16/400 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q I +V++G C LMPTG GKS+CYQ+PAL + G+ +VVSPLI
Sbjct: 18 VLKKVFGYDAFRGNQQVVIDSVMAGESCCVLMPTGAGKSLCYQVPALCRRGVGIVVSPLI 77
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++Q+ L+E G+ ++S + Y DL +G+ L LLYV PE P F+
Sbjct: 78 ALMQDQIATLRELGVRATSINSALSYDEVQAAYRDLRAGE--LDLLYVAPERLVRPEFVG 135
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L++++ RGL+ L+AIDEAHCIS WGHDFRP YR+L+++R L VP LA+TATA +
Sbjct: 136 LLEELNQRGLIALLAIDEAHCISQWGHDFRPEYRELTNVRAKLEGVPCLAVTATADEPTR 195
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
KD+ E L L P ++ S F+RPN+ Y V K + L LK I+YCL
Sbjct: 196 KDIQERLNL--PRLISSGFDRPNITYTVGIKH---NPKQQLRRFLKERPAGESGIIYCLS 250
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E +A+L G YHAG ++ R + D +I ++VATVAFGMGID+ +V
Sbjct: 251 RKKVEETAAWLVEEGFDALPYHAGFDNSVREANQDRFIKEEGLIMVATVAFGMGIDKPNV 310
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PK++EA+YQE+GRAGRD LPS++ + YGM D + ++ ++++ +Q
Sbjct: 311 RFVAHLDLPKNIEAYYQETGRAGRDGLPSEAWMIYGMQDVVLLNQMIDRSEAPENQKQIE 370
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
R++ + YCE + CRR +L FG++ C
Sbjct: 371 RQK--------LRSFLAYCETATCRRSVLLRYFGDECEPC 402
>gi|170593171|ref|XP_001901338.1| Bloom's syndrome protein homolog [Brugia malayi]
gi|158591405|gb|EDP30018.1| Bloom's syndrome protein homolog, putative [Brugia malayi]
Length = 1054
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 179/410 (43%), Positives = 235/410 (57%), Gaps = 31/410 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ +L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+PA+ GI +V+S
Sbjct: 285 MYHILKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAILSKGITVVIS 344
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE I L+S +IY L+ P ++LLYVTPE + A+
Sbjct: 345 PLKSLIEDQKMKMKELEICCYALTSELNQAESDRIYSMLNESSPKIKLLYVTPEKIAASE 404
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
+ +H R LL +DEAHC+S WGHDFRP Y KL SLR P VP++ALTAT
Sbjct: 405 KLNNMFFSLHRRDLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTAT 464
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---------RYKDLLDDAYADLCSVL 253
A PK+ D+ L +Q + SSF R NL Y+V R D + Y D
Sbjct: 465 ATPKIVTDIRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRSLVRVMDRMKILYPD----- 519
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
IVYCL R C+ +S L IS YHAGL+DK R V WIS++ V+
Sbjct: 520 -----KSGIVYCLSRRDCELVSKMLENHAISSEVYHAGLSDKKRLEVQTKWISNQVNVIC 574
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ DVR V HF++PKS+EA+YQE+GRAGRD L S + Y +D R+ +
Sbjct: 575 ATIAFGMGIDKPDVRFVIHFSMPKSIEAYYQETGRAGRDGLNSYCAILYSYNDSVRIRKM 634
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ N+Q T +S Q+V YCE S CRRK ++E FGE
Sbjct: 635 IEG--ENNTQGVRTMHLNS------VLQIVAYCENVSICRRKLLVEHFGE 676
>gi|408489878|ref|YP_006866247.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
gi|408467153|gb|AFU67497.1| ATP-dependent DNA helicase RecQ [Psychroflexus torquis ATCC 700755]
Length = 694
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 243/395 (61%), Gaps = 23/395 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q + I+ VLSG+D +MPTGGGKSMC+Q+PAL G+ LV+SPLIA
Sbjct: 13 LKKYFGYDSFRKDQAEIIEHVLSGKDALVVMPTGGGKSMCFQLPALKFEGLTLVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GLK GI +F +STQT +V+ +I + ++LLY PE +S
Sbjct: 73 LMKDQVDGLKSNGIPADFYNSTQTPEVQLEIKSKV--ANRDIKLLYTAPES------LSG 124
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L++I S ++ VA+DEAHCISSWGHDFRPSY++L L+ LP PI+ALTATA +K
Sbjct: 125 LQEILSETYISCVAVDEAHCISSWGHDFRPSYQQLGFLKKSLPKTPIIALTATADKTTRK 184
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L + SSF+R N+F EVR + D + + L D I YCL R
Sbjct: 185 DILKQLGIPKAKAFLSSFDRENIFLEVR---VADKRLKQIENFLLRRKDEAGIAYCLSRK 241
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++L+ L+ G AYHAGL + RS + ++++ + Q++ ATVAFGMGID+ +VR
Sbjct: 242 STEKLAKDLTKKGFKAKAYHAGLPSEERSKIQEEFVYDKTQIICATVAFGMGIDKSNVRW 301
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H+N+PK++E +YQE GRAGRD L + +L+++ D I K +NS + +E
Sbjct: 302 VIHYNMPKNLEGYYQEIGRAGRDGLQANALMFHSYAD-----VIQYKRFIENSMNQKVQE 356
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ ++ + E + CRR+ +L FGE +
Sbjct: 357 -------AKLDRIKQFAEATSCRRRILLGYFGEHL 384
>gi|298206967|ref|YP_003715146.1| ATP-dependent DNA helicase recQ [Croceibacter atlanticus HTCC2559]
gi|83849601|gb|EAP87469.1| ATP-dependent DNA helicase recQ [Croceibacter atlanticus HTCC2559]
Length = 698
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 161/400 (40%), Positives = 238/400 (59%), Gaps = 23/400 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
++ +LL+ HFG+ F+ Q I VLSG+D +MPTGGGKS+CYQ+PALAK G LV+
Sbjct: 7 SITQLLKTHFGYDSFKPNQEAIINDVLSGKDTLAIMPTGGGKSLCYQLPALAKEGTALVI 66
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L+ GI + +S+Q + + + + L G+ L L YV PE + P
Sbjct: 67 SPLIALMKDQVDALRANGITAAYYNSSQPEEEQQHVLQQLTKGE--LSLFYVAPE--SLP 122
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ I LNL+A+DEAHCIS+WGHDFRP+Y KL SL+ P +PI+ALTATA
Sbjct: 123 NLRHTISTI----TLNLIAVDEAHCISAWGHDFRPAYTKLGSLKQEFPQIPIIALTATAD 178
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
Q D+ + L + + +SF+R NLF +VR + L G I+Y
Sbjct: 179 KATQDDISKQLNISHAKKHLASFDRQNLFLDVRPGQ---SRIKQILKFLGPRGAQSGIIY 235
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R + ++L+ L G AYHAGL+ + R+++ +D+++ ++VAT+AFGMGID+
Sbjct: 236 CLSRKSTEKLAQKLKQAGYKAKAYHAGLSPEDRANIQEDFVNDTTPIIVATIAFGMGIDK 295
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PK++E +YQE GRAGRD L + +LL+Y D ++ +
Sbjct: 296 SNVRWVIHYNMPKNIEGYYQEIGRAGRDGLKAHTLLFYSYADVIQL------------RR 343
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F+ + + ++ +M Y E CRRK +L FGE +
Sbjct: 344 FTEGTATEEFQLAKLERMQHYAEALSCRRKALLNYFGEHL 383
>gi|383316443|ref|YP_005377285.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
gi|379043547|gb|AFC85603.1| ATP-dependent DNA helicase RecQ [Frateuria aurantia DSM 6220]
Length = 602
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 159/389 (40%), Positives = 239/389 (61%), Gaps = 17/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR +Q ++ V G D LMPTGGGKS+CYQ+PAL + G+ +VVSPLIALM++
Sbjct: 13 FGYTAFRGQQQAVVEHVAEGGDALVLMPTGGGKSLCYQVPALLRSGLGVVVSPLIALMQD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+A +L+S+ + + + + SG+ L+LLYV PE +P ++ L++I
Sbjct: 73 QVDALRQLGVAAAYLNSSLDAEAQRAVERQMMSGE--LQLLYVAPERLLSPRLLAMLERI 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP YR+L+ L+ P VP +ALTATA P+ +++++E
Sbjct: 131 E----IALFAIDEAHCVSQWGHDFRPEYRELAELQRRFPQVPRIALTATADPRTREEIIE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L LQ SSF+RPN+ Y V + L + L + ++YCL R DE
Sbjct: 187 RLGLQQARQFLSSFDRPNIRYRVGQRQ---QGRKQLEAFLADHRGDSGVIYCLSRKKVDE 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ +L A G + AYHAGL RS ++ V+VATVAFGMGID+ DVR V H
Sbjct: 244 TAGWLQAMGFNALAYHAGLEAALRSEHQQRFLREDGVVMVATVAFGMGIDKPDVRFVAHL 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E +YQE+GRAGRD LP+ + + YG++D M ++++++S + + R++
Sbjct: 304 DLPRSIEGYYQETGRAGRDGLPADAWMVYGLNDVVTMSQMIAQSESADDRKRIERQK--- 360
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ Y E + CRR +L +FGE
Sbjct: 361 -----LEALLGYAEATTCRRVLLLAAFGE 384
>gi|85858064|ref|YP_460266.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
gi|85721155|gb|ABC76098.1| superfamily II DNA helicase [Syntrophus aciditrophicus SB]
Length = 619
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 163/391 (41%), Positives = 238/391 (60%), Gaps = 18/391 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + + ++ G D F LMPTGGGKS+CYQ+PAL +PG+ +VVSPLI+LM++
Sbjct: 13 FGYDAFRLHQQEIVDGLIRGEDAFVLMPTGGGKSLCYQLPALHRPGVGIVVSPLISLMKD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ F +S+ + K+ L GK L L+Y+ PE + F+ +L I
Sbjct: 73 QVDSLKAYGVKAAFYNSSLSGTEARKVLARLHGGK--LDLIYIAPERLMSREFLERLNDI 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHCIS WGHDFRP YR+L LR P++P++ALTATA ++D++E
Sbjct: 131 P----IALFAIDEAHCISQWGHDFRPEYRQLGRLRGLFPEIPLIALTATAEAHTRRDILE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L+ S F+RPN+ Y V K +A L + L+ IVYCL R ++
Sbjct: 187 RLGLRQARSYISGFDRPNIRYTVLEKR---KPFAQLTTFLQPRYKGTGIVYCLSRQRVEK 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G A YHAGL AR V +D++ +++VATVAFGMGID+ ++R V H+
Sbjct: 244 VAGALTEAGFQAAPYHAGLPAGARKQVQEDFLRDDIRIIVATVAFGMGIDKSNIRWVVHY 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
+IPK++E++YQE+GRAGRD LP+++LL +G D L++ +NS++ R +
Sbjct: 304 DIPKNIESYYQETGRAGRDGLPAEALLLFGYGD-----ISLARGLIENSKNPERR----R 354
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ + MV Y E CRR+ +L FGE +
Sbjct: 355 IELHKLNAMVGYAEALSCRRRILLGYFGESL 385
>gi|340348782|ref|ZP_08671813.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
gi|339613206|gb|EGQ17991.1| ATP-dependent helicase RecQ [Prevotella nigrescens ATCC 33563]
Length = 727
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 238/403 (59%), Gaps = 23/403 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG +F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKHFFGFDKFKGAQEAIIRNVLAGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDNVKADIQNGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEESIEFFKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAIDQIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+++SL +++ KSSFNRPNL+YEVR K +D + +K N I
Sbjct: 181 ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPKKNEEDTNRQIIKFIKQNLGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD K +++Y SKN K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFY------------SKNDLKKL 348
Query: 383 QSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
++F + +++ I + Y E S CRRK +L FGE+
Sbjct: 349 ENFMEGKPVAEQDIGRQLLQETETYAESSVCRRKLLLHYFGEE 391
>gi|323307639|gb|EGA60904.1| Sgs1p [Saccharomyces cerevisiae FostersO]
Length = 1396
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|365763903|gb|EHN05429.1| Sgs1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1314
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|367001388|ref|XP_003685429.1| hypothetical protein TPHA_0D03600 [Tetrapisispora phaffii CBS 4417]
gi|357523727|emb|CCE62995.1| hypothetical protein TPHA_0D03600 [Tetrapisispora phaffii CBS 4417]
Length = 1280
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 157/402 (39%), Positives = 249/402 (61%), Gaps = 18/402 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
L+ F FR QL+AI + L+GRD F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 538 LKNSFNLNSFRPNQLEAINSTLNGRDVFVLMPTGGGKSLCYQLPAIVKSGKTSGTTIVIS 597
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM +QV L I +SS + K + +G L L+Y++PE+ +A+
Sbjct: 598 PLISLMHDQVEHLLNINIKASMISSKSPAAQRKKTFNLFING--LLDLVYISPEMMSASQ 655
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+K+++ L + +DEAHC+S+WGHDFRP Y++L + P +P++ALTATA
Sbjct: 656 QCKRAIKRLYETNKLARIVVDEAHCVSNWGHDFRPDYKELKLFKREYPTIPLIALTATAN 715
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+VQ D++ +L ++NPL+LK SFNR NL Y +R K + ++CS LK + + I+
Sbjct: 716 EQVQLDIINNLGVRNPLLLKQSFNRTNLDYIIRTKS--KNTVNEICSSLKTDFKNQSGII 773
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++++ +++ I A YHAG+ R + W +++ QV+ ATVAFGMGID
Sbjct: 774 YCNSKISCEQVAQQIASQKIRTAFYHAGMTPSERLKIQKAWQNNQVQVICATVAFGMGID 833
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V HF IP+++E +YQE+GRAGRD LP++ + Y+ D R ++ ++ +++S N +
Sbjct: 834 KPDVRFVIHFTIPRTLEGYYQETGRAGRDGLPAQCITYFSFKDVRSLQTMIQRDKSLNKE 893
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQV 424
+ K + Q+V YC+ + CRR+++L+ F E +
Sbjct: 894 -------NKLKHLEKLQQVVSYCDNVTTCRRQQVLKYFNEDI 928
>gi|6323844|ref|NP_013915.1| Sgs1p [Saccharomyces cerevisiae S288c]
gi|464912|sp|P35187.1|SGS1_YEAST RecName: Full=ATP-dependent helicase SGS1; AltName: Full=Helicase
TPS1
gi|349194|gb|AAA35167.1| bps. 390..881 = homology to E.coli recQ; bps. 414..430 = ATP binding
site [Saccharomyces cerevisiae]
gi|642282|emb|CAA87811.1| Tps1p [Saccharomyces cerevisiae]
gi|726279|gb|AAB60289.1| Sgs1p [Saccharomyces cerevisiae]
gi|285814193|tpg|DAA10088.1| TPA: Sgs1p [Saccharomyces cerevisiae S288c]
Length = 1447
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|254583105|ref|XP_002499284.1| ZYRO0E08250p [Zygosaccharomyces rouxii]
gi|238942858|emb|CAR31029.1| ZYRO0E08250p [Zygosaccharomyces rouxii]
Length = 1294
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 243/401 (60%), Gaps = 18/401 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
L FG FR QL A+ + L+G+D F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 553 LHQSFGLRSFRPNQLQAVNSTLAGKDVFVLMPTGGGKSLCYQLPAIVKSGKTRGTTIVIS 612
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L I SS T + + + G L L+Y++PE+ +A+
Sbjct: 613 PLISLMQDQVEHLLNNNIKASMFSSRGTADQRRQTFNLFIHG--LLDLIYISPEMISASE 670
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+KK+H+ G L + +DEAHC+S+WGHDFRP Y++L + P VP++ALTATA+
Sbjct: 671 QCKRGIKKLHNDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPHVPMMALTATAS 730
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+ DV+ +L L++P+ LK SFNR NLFY V K + A++C + + I+
Sbjct: 731 EQVRLDVIHNLELKDPVFLKQSFNRKNLFYGVVRK--TKNTIAEICESINTRFANQTGII 788
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++ +A + GI CA YHAG+ RS V W + QV+ ATVAFGMGID
Sbjct: 789 YCHSKNSCEQTAAQIQRNGIRCAFYHAGMEPDERSDVQRAWQNDDLQVICATVAFGMGID 848
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+ +P+++E +YQE+GRAGRD PS + YY D R ++ ++ K+++ +
Sbjct: 849 KADVRFVYHYTVPRTLEGYYQETGRAGRDGKPSFCITYYTFRDVRSIQTMIQKDKNLDKD 908
Query: 384 SFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQ 423
+ +K ++ ++ YCE G CRRK +L F E+
Sbjct: 909 -------NKEKHLNKLQNVMMYCENGLDCRRKLVLSYFNEE 942
>gi|253702373|ref|YP_003023562.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
gi|251777223|gb|ACT19804.1| ATP-dependent DNA helicase RecQ [Geobacter sp. M21]
Length = 599
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 239/398 (60%), Gaps = 18/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L FG FR Q + ++ VLSGRD F LMPTGGGKS+CYQIPAL PG LVVSP
Sbjct: 6 IQILNDVFGFKSFRSPQHEIVETVLSGRDAFVLMPTGGGKSLCYQIPALCFPGTALVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E GI+ +S ++ L +G+ L+LLYV PE + GF
Sbjct: 66 LISLMKDQVDALRENGISAACYNSALGEAEARRVLAQLHAGE--LKLLYVAPERLLSDGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ ++K + ++L AIDEAHC+S WGHDFRP Y +L LR P++P++ALTATA +
Sbjct: 124 LERIKPLS----ISLFAIDEAHCVSQWGHDFRPEYAQLGVLREIFPEIPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L LQ + F+RPN+ Y V K+ + L L + D IVY L
Sbjct: 180 TRGDILSRLGLQGATCYCAGFDRPNIRYSVIDKN---KPFNQLTGFLSSRKDEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A GI AAYHAGL DK R V + ++ ++VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVARKLCAAGIKAAAYHAGLPDKERHRVQEAFLKDDIKIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+++PKS+E++YQE+GRAGRD LP+ +LL +G D ++ +
Sbjct: 297 VRFVVHYDMPKSIESYYQETGRAGRDGLPADALLLFGYGDVAVARGLIGNGGNAE----- 351
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++ + + M + E CRR+ +L FG+++
Sbjct: 352 ----QNRIELHKLNCMTGFAEAQTCRRRVLLGYFGDRL 385
>gi|22651415|gb|AAL05260.1| QDE3-like protein [Blumeria graminis]
Length = 1632
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 177/410 (43%), Positives = 245/410 (59%), Gaps = 21/410 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K+L+ F FR QL+AI A L+G D F LMPTGGGKS+CYQ+PA+ + G + +V
Sbjct: 789 KMLKERFKLKGFRHHQLEAINATLNGEDAFILMPTGGGKSLCYQLPAVVQSGKTKGVTIV 848
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM +QV L++ I ++ + +I +L P ++LLYVTPE+
Sbjct: 849 VSPLLSLMHDQVEHLRKNSIQAATINGDTDSAERREIMNNLRQQHPEQHIQLLYVTPEMV 908
Query: 142 ATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ G M L ++ R L IDEAHC+S WGHDFR Y LS LR P VPI+ALT
Sbjct: 909 SQSGQMGDILSSLNQRSKLARFVIDEAHCVSQWGHDFRKEYIALSRLRKDFPSVPIMALT 968
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK------DLLDDAYADLCSVLK 254
ATA V+ DV+ +L + P + SFNRPNL+YEVR K +LL + ADL + K
Sbjct: 969 ATATENVKNDVISNLGMGKPPIFSQSFNRPNLYYEVRPKSGRKMPELLKE-IADLVT-RK 1026
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
G T I+Y L R C++++ LS IS YHAG+ + ++ V DW S + QVVV
Sbjct: 1027 YRGQT-GIIYTLSRKGCEDMAKKLSKEFNISVHYYHAGMKSEEKTKVTRDWQSGKLQVVV 1085
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ DVR V H+ IPKS+E +YQE+GRAGRD S LYY D +
Sbjct: 1086 ATIAFGMGIDKPDVRFVIHYTIPKSLEGYYQETGRAGRDGKKSGCYLYYSWGDTVMLRKF 1145
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ ++ +KN Q ST ++ + ++ M+ YC+ + CRR ++L FGE
Sbjct: 1146 IFESDTKNDQK-STDQKEREWAM--LQTMIGYCDNRADCRRMQVLRYFGE 1192
>gi|387132182|ref|YP_006298154.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
gi|386375030|gb|AFJ09244.1| ATP-dependent DNA helicase RecQ [Prevotella intermedia 17]
Length = 727
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 236/403 (58%), Gaps = 23/403 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG +F+ Q I+ VL G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKHFFGFDKFKGAQETIIRNVLEGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDNVKADIQSGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEDSIEFFKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAVDQIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+++SL +++ KSSFNRPNL+YEVR K +D + +K N I
Sbjct: 181 ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRPKKNEEDTNRQIIKFIKQNLGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLQANEIKAEPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD K +++Y SKN K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFY------------SKNDLKKL 348
Query: 383 QSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
++F + +++ I + Y E S CRRK +L FGE+
Sbjct: 349 ENFMEGKPVAEQDIGRQLLQETETYAESSVCRRKLLLHYFGEE 391
>gi|347829887|emb|CCD45584.1| hypothetical protein [Botryotinia fuckeliana]
Length = 1775
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 167/407 (41%), Positives = 240/407 (58%), Gaps = 20/407 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLV 83
K L+ F FR QL+AI A L+GRD F LMPTGGGKS+CYQ+PA+ + G+ +V
Sbjct: 899 KALKDRFRLKGFRHNQLEAINATLAGRDAFILMPTGGGKSLCYQLPAIVQSGKTKGVTIV 958
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPEL- 140
VSPL+ALM +QV L + I +S T + + +++ L+ KP + LLYVTPE+
Sbjct: 959 VSPLLALMHDQVDHLHKLRIQAYLFNSESTQETRQQLFNGLNERKPEQFVELLYVTPEMI 1018
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ SKL ++++ L + IDEAHC+S WGHDFRP Y+ L LR P VP +ALT
Sbjct: 1019 NKSNAIQSKLDDLYAKKRLARIVIDEAHCVSQWGHDFRPDYKNLHELRGRYPGVPFIALT 1078
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDA---YADLCSVLKAN- 256
ATA +V+KDV+ +L +QN LK SFNRPN++YEVR K ++++ +L +
Sbjct: 1079 ATATERVKKDVIHNLGMQNCEQLKQSFNRPNIYYEVRRKTGKGSTAAMFSEITKMLSVDY 1138
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YCL R C+E++ L GI +HA + + + W QVVVAT+
Sbjct: 1139 KNQSGIIYCLSRDNCEEVAKKLREQGIRAHHFHAHMTPEEKKDTQHRWQIGSIQVVVATI 1198
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+++VR V H+ +PK++E +YQE+GRAGRD P+ LYYG D + + ++ K
Sbjct: 1199 AFGMGIDKQNVRFVIHYCLPKTLEGYYQETGRAGRDGKPAACFLYYGFQDSQIYKKMIEK 1258
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ T +R MV +C+ CRR ++L FGE
Sbjct: 1259 GEG--GPDVKTEQRQM------LEAMVRFCDNRIDCRRVQLLRYFGE 1297
>gi|392297356|gb|EIW08456.1| Sgs1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1341
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 561 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 620
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 621 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 678
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 679 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 738
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 739 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 796
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 797 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 856
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 857 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 916
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 917 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 952
>gi|449457093|ref|XP_004146283.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
[Cucumis sativus]
gi|449511185|ref|XP_004163888.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like, partial
[Cucumis sativus]
Length = 1269
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 243/403 (60%), Gaps = 17/403 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PG+ LV+SPL++L+++
Sbjct: 513 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQD 572
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I+ +LS+ + +I+ DL S +LLYVTPE A + L+
Sbjct: 573 QIMHLIQANISAAYLSANMEWSEQQEIFRDLSSDCSKYKLLYVTPEKVAKSDVLLRHLES 632
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+++R LL + IDEAHC+S WGHDFRP Y+ L L+ P +P+LALTATA V++DV+
Sbjct: 633 LNARHLLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPKIPVLALTATATASVKEDVV 692
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + K +DD + +K N D C IVYCL R
Sbjct: 693 QALGLINCIIFRQSFNRPNLWYSVIPKTKKCVDD----IDKFIKENHFDECGIVYCLSRM 748
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ RS + W ++ ATVAFGMGI++ DVR
Sbjct: 749 DCEKVAERLQECGHKAAFYHGSMDPAQRSFIQKQWSKDEINIICATVAFGMGINKPDVRF 808
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD L S +LYY D R++ ++S+ ++ S S
Sbjct: 809 VIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMISQGATEQSPLVSGYN 868
Query: 390 RSS--------KKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
R++ + + + +MV YCE CRR L FGE+
Sbjct: 869 RTNLGSSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEK 911
>gi|402218656|gb|EJT98732.1| ATP-dependent DNA helicase [Dacryopinax sp. DJM-731 SS1]
Length = 966
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/413 (39%), Positives = 254/413 (61%), Gaps = 21/413 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSP 86
++L FG+ ++ +Q + ++A + G D + PTG GKS+C+QIPA+A G+ +VVSP
Sbjct: 57 RVLTHTFGYTAYKGRQKEIVEAAVRGADVLVVAPTGMGKSLCFQIPAIADQFGVSIVVSP 116
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM NQV L+EKG+ L S + K++I +DL SG P +RLLY+TPE A+ F
Sbjct: 117 LLALMSNQVTTLREKGVNVASLCSDTSQAEKSRITKDLSSGHPRIRLLYITPEKLASAEF 176
Query: 147 MSKLKKIH-SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ K++ +R ++ L+ +DEAHCI+ WG DFRP YR L + R P+VPI+ALTA+A
Sbjct: 177 SKLMMKVYDNRQVMRLI-VDEAHCITEWGWDFRPEYRTLGNFRQKYPEVPIMALTASATA 235
Query: 206 KVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRY----------KDLLDDAYADLCSVL 253
VQ D++ SL + + +L+ FNR NLFYE+++ +DL+D Y + +
Sbjct: 236 AVQDDIVSSLKMSSEHLLRVVHPFNRKNLFYEIKFVANTEPHLIMQDLVD--Y--ILKLT 291
Query: 254 KANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
+ G +C I+YC R CD+++ +L GI+ YH G++ K ++ L +W+ + +VV
Sbjct: 292 ERRGRASCGIIYCRARAACDQVAGFLRRKGITAKPYHRGVSPKVLATTLQEWLDDKVEVV 351
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
VATVAFGMGID+ DVR + H+++PKS E +YQE+GRAGRD SK +LYY ++D RR F
Sbjct: 352 VATVAFGMGIDKPDVRYILHYDLPKSFEGYYQETGRAGRDGSASKCILYYSIEDARRAMF 411
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQV 424
++ ++ K + + S+++ ++ E CR I FGE +
Sbjct: 412 LVQQDLQKRIKGANKTATPSQRAPKSLELLIRMAENIKTCRHVSICRYFGESI 464
>gi|422019090|ref|ZP_16365640.1| ATP-dependent DNA helicase RecQ [Providencia alcalifaciens Dmel2]
gi|414103632|gb|EKT65206.1| ATP-dependent DNA helicase RecQ [Providencia alcalifaciens Dmel2]
Length = 608
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 174/391 (44%), Positives = 237/391 (60%), Gaps = 22/391 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q I +L GRDC LMPTGGGKS+CYQ+PAL K G+ LVVSPLI+LM++
Sbjct: 21 FGYQSFRPGQDAVIGGILDGRDCLVLMPTGGGKSLCYQVPALVKQGVTLVVSPLISLMKD 80
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK G+ L+S+QT + +I E GK ++LLYV PE T F+ +L+
Sbjct: 81 QVDQLKLHGVEAACLNSSQTSLEQRQIMEQCTQGK--IKLLYVAPERLLTDYFIQQLESW 138
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L+A+DEAHCIS WGHDFRP YR L LR LP+VP++ALTATA + D++
Sbjct: 139 D----IALLAVDEAHCISQWGHDFRPEYRSLGQLRRALPNVPVMALTATADETTRADIVR 194
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
L L +PL+ SSF+RPN+ Y + +YK L L +KA IVYC R+
Sbjct: 195 LLELNDPLIHVSSFDRPNIRYTLVEKYKPL-----DQLWFFIKAQKGKSGIVYCNSRSKV 249
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+E + L G+S AAYHAGL + R V D + Q+VVATVAFGMGI++ +VR V
Sbjct: 250 EETAERLQKRGLSVAAYHAGLENAQREWVQDAFQKDNLQIVVATVAFGMGINKSNVRFVA 309
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF+IP+++EA+YQE+GRAGRD + ++++L+Y D + L + + Q ER
Sbjct: 310 HFDIPRNIEAYYQETGRAGRDGVEAEAILFYDPADMAWLRRCLEEKPAGMQQDI---ERH 366
Query: 392 SKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+I+ F+ E CRR +L FGE
Sbjct: 367 KLNAIAAFA------EAQTCRRLVLLNYFGE 391
>gi|259148775|emb|CAY82020.1| Sgs1p [Saccharomyces cerevisiae EC1118]
Length = 1447
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|333029342|ref|ZP_08457403.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
gi|332739939|gb|EGJ70421.1| ATP-dependent DNA helicase RecQ [Bacteroides coprosuis DSM 18011]
Length = 727
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 243/404 (60%), Gaps = 25/404 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P++ G +VVSPLIA
Sbjct: 11 LKEYFGFDKFKGNQEAIIKNLLAGNDTFVLMPTGGGKSLCYQLPSILLEGTAIVVSPLIA 70
Query: 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +++ ++ EDL SGK +LLYV PE
Sbjct: 71 LMKNQVDAMRSFSEIDGVAHYINSSLNKSEIE-QVKEDLVSGKT--KLLYVAPESLTKED 127
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ LK I ++ A+DEAHCIS WGHDFRP YR++ + + + P++ALTATA P
Sbjct: 128 NVDFLKSIK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIIDEIGKAPLIALTATATP 183
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + + V KSSFNRPNL+YEV+ K D D+ +K N + I+YC
Sbjct: 184 KVQHDIQKNLGIVDAKVFKSSFNRPNLYYEVKAK--TKDVDKDVILFIKNNPNKSGIIYC 241
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +EL+ L A GI+ +YHAG++ R+ DD++ R V+VAT+AFGMGID+
Sbjct: 242 LSRKKVEELTKILQANGINARSYHAGMDAATRNQNQDDFLMERVDVIVATIAFGMGIDKP 301
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++PKS+E +YQE+GRAGRD K + +Y D +++E K Q
Sbjct: 302 DVRFVLHYDMPKSLEGYYQETGRAGRDGGEGKCVTFYSNKDLQKLE--------KFMQGK 353
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QVLGC 427
E+ K + Y E S CRRK +L FGE +V C
Sbjct: 354 PVAEQEIGKQL--LLDTAAYAESSLCRRKSLLHYFGEDYEVENC 395
>gi|323336083|gb|EGA77356.1| Sgs1p [Saccharomyces cerevisiae Vin13]
Length = 1447
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|190408415|gb|EDV11680.1| ATP-dependent helicase SGS1 [Saccharomyces cerevisiae RM11-1a]
Length = 1447
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|151945893|gb|EDN64125.1| Nucleolar DNA helicase of the RecQ family involved in maintenance of
genome integrity [Saccharomyces cerevisiae YJM789]
Length = 1447
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|424790625|ref|ZP_18217151.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
gi|422797927|gb|EKU26107.1| DNA helicase [Xanthomonas translucens pv. graminis ART-Xtg29]
Length = 602
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 240/389 (61%), Gaps = 17/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q D ++ V +G+D LMPTGGGKS+CYQIP+L + G +V+SPLIALM++
Sbjct: 13 FGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGIVISPLIALMQD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ E+L+ST + ++ +L +G+ L LLYV PE TP F+S L+
Sbjct: 73 QVEALRQLGVRAEYLNSTLDAETAQRVERELLAGE--LDLLYVAPERLLTPRFLSLLE-- 128
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
R + L AIDEAHC+S WGHDFRP YR+L+ L P +P +ALTATA P Q+++ E
Sbjct: 129 --RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPPTQREIAE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L SSF+RPN+ Y V KD ++ L L+A+ + IVYC+ R +E
Sbjct: 187 RLDLTQARHFVSSFDRPNIRYTVVQKD---NSKRQLLDFLRAHRGSAGIVYCMSRRKVEE 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ +L+ G++ YHAGL + R+ ++ V+ AT+AFGMGID+ DVR V H
Sbjct: 244 TAEFLAKEGLNALPYHAGLPAEVRAGNQRRFLREDGIVMCATIAFGMGIDKPDVRFVAHT 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++PKS+E +YQE+GRAGRD +++ L YG+ D +L K + ++ R+R +
Sbjct: 304 DLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLKQMIEKGEAGEDRKRVER 358
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + Q++ YCE CRR+ +L FGE
Sbjct: 359 RKL---DQLLGYCESMQCRRQVLLAGFGE 384
>gi|312091032|ref|XP_003146836.1| RecQ helicase [Loa loa]
Length = 970
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/404 (44%), Positives = 238/404 (58%), Gaps = 19/404 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ ++L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+PA+ G+ +V+S
Sbjct: 279 MYRVLKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAVLSEGVTVVIS 338
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE I L+S + +IY L+ P ++LLYVTPE + A+
Sbjct: 339 PLKSLIEDQKMKMKELEICCYALTSELSQAESDRIYGMLNENSPKIKLLYVTPEKIAASE 398
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
+ +H RGLL +DEAHC+S WGHDFRP Y KL SLR P VP++ALTAT
Sbjct: 399 KLNNVFHSLHRRGLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTAT 458
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDT 259
A PK+ D L +Q + SSF R NL Y+V K LL D +L
Sbjct: 459 ATPKIVTDTRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRSLL--KVMDRMKILYPG--K 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R C+ ++ L + +S YHAGL+DK R V WI++R V+ AT+AFG
Sbjct: 515 SGIVYCLSRKDCESVAKMLESHSMSSEVYHAGLSDKKRLEVQTRWINNRVNVICATIAFG 574
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF+IPKS+E +YQE+GRAGRD L S + Y +D R+ ++
Sbjct: 575 MGIDKPDVRFVIHFSIPKSIEGYYQETGRAGRDGLNSYCAILYSYNDSVRIRKMIEG--E 632
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N+Q T SS ++V YCE S CRRK ++E FGE
Sbjct: 633 NNTQGVRTMHLSS------VLEIVAYCENVSICRRKWLVEHFGE 670
>gi|256271606|gb|EEU06648.1| Sgs1p [Saccharomyces cerevisiae JAY291]
Length = 1447
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|393911582|gb|EJD76373.1| CBR-HIM-6 protein [Loa loa]
Length = 1044
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 178/404 (44%), Positives = 238/404 (58%), Gaps = 19/404 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ ++L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+PA+ G+ +V+S
Sbjct: 279 MYRVLKSRFGFNQFRHRQKHAIIAALLGYDCFILMPTGAGKSLCYQLPAVLSEGVTVVIS 338
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE I L+S + +IY L+ P ++LLYVTPE + A+
Sbjct: 339 PLKSLIEDQKMKMKELEICCYALTSELSQAESDRIYGMLNENSPKIKLLYVTPEKIAASE 398
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
+ +H RGLL +DEAHC+S WGHDFRP Y KL SLR P VP++ALTAT
Sbjct: 399 KLNNVFHSLHRRGLLTRFVVDEAHCVSQWGHDFRPDYTKLQSLRRMFTNPVVPVMALTAT 458
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDT 259
A PK+ D L +Q + SSF R NL Y+V K LL D +L
Sbjct: 459 ATPKIVTDTRVHLAIQQSKLFISSFVRTNLKYDVIAKGPRSLL--KVMDRMKILYPG--K 514
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYCL R C+ ++ L + +S YHAGL+DK R V WI++R V+ AT+AFG
Sbjct: 515 SGIVYCLSRKDCESVAKMLESHSMSSEVYHAGLSDKKRLEVQTRWINNRVNVICATIAFG 574
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF+IPKS+E +YQE+GRAGRD L S + Y +D R+ ++
Sbjct: 575 MGIDKPDVRFVIHFSIPKSIEGYYQETGRAGRDGLNSYCAILYSYNDSVRIRKMIEG--E 632
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N+Q T SS ++V YCE S CRRK ++E FGE
Sbjct: 633 NNTQGVRTMHLSS------VLEIVAYCENVSICRRKWLVEHFGE 670
>gi|349580478|dbj|GAA25638.1| K7_Sgs1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1447
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|120434956|ref|YP_860642.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117577106|emb|CAL65575.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 732
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 243/403 (60%), Gaps = 24/403 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q + I ++++G+D F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKELKRYFGFSQFKGLQEEVITSIVNGKDTFVVMPTGGGKSLCYQLPALISDGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A SS +VK ++ +D+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRSISSEHGVAHVLNSSLNKTEVK-QVKDDISNG--ICKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
++ LK + +A+DEAHCIS WGHDFRP YR L ++ + D +P++ LT
Sbjct: 125 TKEDYVDFLK----NQTIAFLAVDEAHCISEWGHDFRPEYRNLRNILKRIGDNIPVIGLT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNL+YEVR K + AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGITDAKTFKASFNRPNLYYEVRPK--TKNIEADITRFVKQNDGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K RS D ++ VVVAT+AFGM
Sbjct: 239 GIIYCLSRKKVEELAQTLQVNGIKAVPYHAGLDAKKRSKHQDMFLMEDIDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGK--- 355
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ ++V Y E S RRK IL FGE+
Sbjct: 356 -----PVAEQEIGHAL--LQEVVAYAETSVSRRKFILHYFGEE 391
>gi|261880042|ref|ZP_06006469.1| ATP-dependent helicase RecQ [Prevotella bergensis DSM 17361]
gi|270333282|gb|EFA44068.1| ATP-dependent helicase RecQ [Prevotella bergensis DSM 17361]
Length = 742
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/416 (41%), Positives = 244/416 (58%), Gaps = 31/416 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ +++ L L+ +FG F+ Q I++++ G D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MMKEDNLTLRLKQYFGFDSFKGDQEAIIKSLMGGSDAFVLMPTGGGKSLCYQLPSLLMDG 60
Query: 80 IVLVVSPLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+V+SPLIALM+NQV GL E+ FL+S+ Q T++ ED+ SGK +LLYV
Sbjct: 61 TAIVISPLIALMKNQVDVVNGLTEESGVAHFLNSSLNKQAITQVEEDVHSGKT--KLLYV 118
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR-------KLSSLRN 189
PE P + + ++ AIDEAHCIS WGHDFRP YR K++S R
Sbjct: 119 APESLNKPDNLEFFQSFR----ISFYAIDEAHCISEWGHDFRPEYRNIRPTIDKIASSRG 174
Query: 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADL 249
PI+ALTATA KV+ D+ +SL + + KSSFNRPNL+YEVR K +DA + +
Sbjct: 175 E-KRAPIIALTATATDKVRSDIKKSLGIVDARDFKSSFNRPNLYYEVRQKASEEDADSQI 233
Query: 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
LK + I+YCL R +ELS L G A YHAGL+ + R+ DD++
Sbjct: 234 IRFLKQHEGKSGIIYCLSRKKVEELSKKLQINGYKAAPYHAGLDTEVRTQTQDDFLREDI 293
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
++VAT+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D ++
Sbjct: 294 DIIVATIAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGRCIAFYSPKDLKK 353
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
+E F+ + ++K IS + Y E S CRRK +L FGE+
Sbjct: 354 LE------------KFTDNKGEAEKEISRQLLEETKAYAESSVCRRKFLLHYFGEE 397
>gi|156844324|ref|XP_001645225.1| hypothetical protein Kpol_1060p23 [Vanderwaltozyma polyspora DSM
70294]
gi|156115884|gb|EDO17367.1| hypothetical protein Kpol_1060p23 [Vanderwaltozyma polyspora DSM
70294]
Length = 1280
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/414 (39%), Positives = 254/414 (61%), Gaps = 18/414 (4%)
Query: 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
K K + E L L F FR QL+AI A LSGRD F LMPTGGGKS+CYQ+PA+
Sbjct: 510 KAKDYNWTEELYYRLHNTFRIQSFRQNQLEAINATLSGRDVFVLMPTGGGKSLCYQLPAI 569
Query: 76 AKPGIV----LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
K G +V+SPLI+LM++QV L +K I +SS T + + + +G L
Sbjct: 570 VKSGTTSGTTIVISPLISLMQDQVEHLLDKNIKACMISSKSTAAQRKETFNLFVNG--LL 627
Query: 132 RLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
L+Y++PE+ +A+ + K++S L+ + +DEAHC+S+WGHDFRP Y+ LS +
Sbjct: 628 DLVYISPEMISASQQCKRAINKLYSSSKLSRIVVDEAHCVSNWGHDFRPDYKSLSFFKRE 687
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P++P++ALTATA+ +V+ D++ +L + NPL LK SFNR NL Y+V+ K + ++C
Sbjct: 688 YPNIPLVALTATASEQVRMDIIANLEMHNPLTLKQSFNRTNLNYQVKAKS--KETINEIC 745
Query: 251 SVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
++LK + I+YC + +C++++ +S I CA YHAG++ R + W ++
Sbjct: 746 TLLKGRFKNQSGIIYCHSKNSCEQVAEQISQHKIRCAFYHAGIDPAERLQIQKAWQKNQI 805
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
QV+ ATVAFGMGID+ DVR V H+ +P+++E +YQE+GRAGRD L S + Y+ D R
Sbjct: 806 QVICATVAFGMGIDKPDVRYVFHYTVPRTLEGYYQETGRAGRDGLYSYCICYFSFKDVRT 865
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
++ ++ K+++ + + +K + Q+ YC+ + CRR +IL+ F E
Sbjct: 866 LQTMIQKDKNLD-------RINKQKHLEKLQQVASYCDNVTDCRRHQILKYFNE 912
>gi|195157038|ref|XP_002019403.1| GL12253 [Drosophila persimilis]
gi|194115994|gb|EDW38037.1| GL12253 [Drosophila persimilis]
Length = 1349
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 241/403 (59%), Gaps = 15/403 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 577 LMHGLSYSFGLKSFRPNQLQVINATLLRNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 636
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS M IY DL+S P ++LLYVTPE ++++
Sbjct: 637 PLKSLIFDQINKLASLDICSKSLSGDVAMADVMAIYRDLESHPPMVKLLYVTPEKISSSA 696
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L +++ ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 697 RFQDILDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVPTIALTATAT 756
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L+N SSFNR NL Y+V K +DD A + ++
Sbjct: 757 PRVRLDILSQLNLKNCKWFLSSFNRSNLRYKVLPKKGASTIDDMSA---YIRTKPPNSSG 813
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CDE++ + G+ AYHAGL D R DW++++ +V+ AT+AFGMG
Sbjct: 814 IIYCLSRKECDEVAKKMCKDGVRAVAYHAGLTDSEREGRQKDWLTNKIRVICATIAFGMG 873
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ ++
Sbjct: 874 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEVADCILYYNYSDMLRLKKMMDGDK--- 930
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K I + ++V YCE + CRR + L+ FGE
Sbjct: 931 ----ALQYNVKKMHIDNLYRIVGYCENITDCRRAQQLDYFGEH 969
>gi|271502372|ref|YP_003335398.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
gi|270345927|gb|ACZ78692.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech586]
Length = 614
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/409 (43%), Positives = 252/409 (61%), Gaps = 23/409 (5%)
Query: 17 NKPLHEKEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
N + KE L +++LR FG+ QFR Q D I A ++GRDC +MPTGGGKS+CYQIPAL
Sbjct: 8 NADVLSKEMLAMQVLRETFGYQQFRPGQQDIINAAINGRDCLVIMPTGGGKSLCYQIPAL 67
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
G+ LVVSPLI+LM++QV L+ G+A L+STQ+ + + ++ G+ L+LLY
Sbjct: 68 VLDGLTLVVSPLISLMKDQVDQLQAYGVAAACLNSTQSREQQQAVFNACRRGE--LKLLY 125
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
+ PE +T GF+ +L ++ +L+AIDEAHCIS WGHDFRP YR L ++ P +P
Sbjct: 126 IAPERLSTDGFLDQLVHWNT----SLIAIDEAHCISQWGHDFRPEYRALGQIKQQCPTLP 181
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVL 253
I+ALTATA ++D+ L L++PLV SSF+RPN+ Y + ++K L L +
Sbjct: 182 IVALTATADDTTRQDIARLLDLRDPLVNVSSFDRPNIRYTLVEKFKPL-----DQLWLFI 236
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
IVYC R ++L A L G+S AYHAGL++ RS V + ++ QVVV
Sbjct: 237 HGQRGKSGIVYCNSRAKVEDLCARLQNRGLSVGAYHAGLDNDRRSQVQEAFLRDDLQVVV 296
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++ L+Y D M ++
Sbjct: 297 ATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPAD---MAWL 353
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K + ER ++ F+ E CRR +L FGE
Sbjct: 354 RRCLEEKPAGMQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 396
>gi|239625286|ref|ZP_04668317.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium
1_7_47_FAA]
gi|239519516|gb|EEQ59382.1| ATP-dependent DNA helicase RecQ [Clostridiales bacterium 1_7_47FAA]
Length = 824
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 240/396 (60%), Gaps = 8/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FRD Q I ++L GRD +MPTG GKS+CYQIPAL GI LV+SPL
Sbjct: 5 EILKQYFGYDTFRDGQDVLINSILEGRDVLGVMPTGAGKSLCYQIPALMMDGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI F++S+ T K+ E +G+ ++YV PE + F+
Sbjct: 65 ISLMKDQVSNLNQVGILAAFINSSLTASQYIKVLELARAGR--YPIIYVAPERLMSEDFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ R +++VA+DEAHC+S WG DFRPSY K+ N LP PI+ A TATA +
Sbjct: 123 RF--ALDGRVKISMVAVDEAHCVSQWGQDFRPSYLKIVDFINQLPVRPIVSAFTATATAE 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D+++ L L+NP V+ + F+R NL++ V+ D YA L + L+ + I+YCL
Sbjct: 181 VRDDIIDILMLRNPNVMTTGFDRSNLYFAVQSPK---DKYATLVNYLERHKGESGIIYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ + L G S YHAGL+D R +D+I R Q++VAT AFGMGID+ +
Sbjct: 238 TRKVVEEVCSQLMREGFSMTRYHAGLSDSERKRNQEDFIYDRAQIMVATNAFGMGIDKSN 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK+ME++YQE+GRAGRD PS+ +L YG D +F + NQ +
Sbjct: 298 VRFVVHYNMPKNMESYYQEAGRAGRDGEPSECILLYGGQDVVTNQFFIDHNQDNEALDPV 357
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
TRE ++ +M YC + C R IL FGE
Sbjct: 358 TREIVMERDRERLRKMTFYCFTNECLRDYILRYFGE 393
>gi|395804511|ref|ZP_10483749.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
gi|395433398|gb|EJF99353.1| ATP-dependent DNA helicase RecQ [Flavobacterium sp. F52]
Length = 768
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 240/401 (59%), Gaps = 23/401 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L L+ +FG +FR Q I +LSG+D +MPTGGGKS+C+Q+PAL PGI +V
Sbjct: 4 EILHATLKENFGFEKFRPNQETIINTILSGQDALAIMPTGGGKSICFQLPALILPGITIV 63
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV LK GI+ +++STQ+ Q + ++L S +L+YV PE
Sbjct: 64 ISPLIALMKDQVDSLKTNGISACYINSTQSSQEQQYYIDNLKSN--HFKLVYVAPES--- 118
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+S L S ++L+AIDEAHCISSWGHDFRP+Y L L++ P PILALTATA
Sbjct: 119 ---LSYLDMAFSELNISLIAIDEAHCISSWGHDFRPAYTNLGYLKSRFPSTPILALTATA 175
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ D+ + L L+NP +SF+R NL EVR D + ++ + I+
Sbjct: 176 DKATRTDISKQLNLKNPKTFIASFDRKNLSLEVR---PALDRVKQIIDFIENKPNESGII 232
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +EL+ L GI AYHAGL+++ R+ D +I+ QVV AT+AFGMGID
Sbjct: 233 YCLSRKATEELAEKLRKNGIEAKAYHAGLDNETRAKTQDQFINDDCQVVCATIAFGMGID 292
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H+N+PK++E +YQE GRAGRD LP++++L+ D ++ Q
Sbjct: 293 KSNVRWVIHYNLPKNIEGYYQEIGRAGRDGLPAETVLFESYADVIQL------------Q 340
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F++ +S ++ +M Y + CRRK +L FGE V
Sbjct: 341 KFASEGLNSDIQLAKLDRMKQYADAVSCRRKILLSYFGELV 381
>gi|323303418|gb|EGA57213.1| Sgs1p [Saccharomyces cerevisiae FostersB]
Length = 1423
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/403 (39%), Positives = 248/403 (61%), Gaps = 20/403 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKXSMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ + + +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNE 1058
>gi|298480171|ref|ZP_06998369.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
gi|298273452|gb|EFI15015.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D22]
Length = 726
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKCFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ AR+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLARTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|325298909|ref|YP_004258826.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324318462|gb|ADY36353.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 606
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/398 (42%), Positives = 240/398 (60%), Gaps = 21/398 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
++K L+ +FG+ FR Q + I VL +D LMPTGGGKS+CYQIPAL G +VVS
Sbjct: 1 MLKTLKSYFGYTSFRPLQEEIISCVLQKKDTLVLMPTGGGKSLCYQIPALLTEGTAIVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GI L+S I + G+ ++LLY++PE L A
Sbjct: 61 PLISLMKDQVEALQNNGIIARALNSNNDETANANIRFECRQGR--VKLLYISPERLLAEI 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ LK IH ++L AIDEAHCIS WGHDFRP Y +L+ LR P VPI+ALTATA
Sbjct: 119 NYL--LKDIH----ISLFAIDEAHCISQWGHDFRPEYTQLAVLREQFPHVPIIALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D+++ L +++P + SSF+RPNL +V+ + + + + IVY
Sbjct: 173 KITREDIVKQLAMRDPQIFISSFDRPNLSLDVKRGYQQKEKNRAVLEFITRHKGESGIVY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R T ++++ L G+S A YHAGL+ R +D+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRNTTEKVADMLEEHGVSTAVYHAGLSSTIRDKAQEDFINDRVQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD LPS +LL+Y D +LS+ S++ Q
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGLPSDTLLFYSFADI----IMLSRFASESGQQ 348
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ +M Y E CRR+ +L FGE
Sbjct: 349 EVNMEK--------LKRMQQYAEADICRRRILLNYFGE 378
>gi|423211952|ref|ZP_17198481.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
gi|295088062|emb|CBK69585.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens XB1A]
gi|392695316|gb|EIY88539.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens
CL03T12C04]
Length = 726
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKCFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ AR+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLARTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|324502133|gb|ADY40940.1| ATP-dependent DNA helicase Q5 [Ascaris suum]
Length = 662
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 173/457 (37%), Positives = 255/457 (55%), Gaps = 62/457 (13%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALA 76
P +E +LR FG+ +++ Q AI +L R D F +PTGGGKS+CYQ+PAL
Sbjct: 98 PEQLQEEAKNVLRNVFGYEKYKTSIQKKAIAGILRKRWDVFVCLPTGGGKSLCYQLPALV 157
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ ++ SPLIAL+++QV K +GI + L+S T + I EDL + P +R+LY+
Sbjct: 158 HSGVTVIFSPLIALIQDQVSACKARGIKCDSLNSKCTADERASIIEDLRAASPQIRMLYI 217
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE ATP + ++ RGLLN + +DEAHC++ WGHDFRP Y KL +LR+ P+V
Sbjct: 218 TPESAATPNIQRLISNLNKRGLLNYLVVDEAHCVTHWGHDFRPDYLKLGNLRSLAPEVRW 277
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-------------- 242
+ALTATA PK Q+D+++ L L N + K+S R NL Y+V KDL+
Sbjct: 278 IALTATANPKAQEDILKQLRLSNVRIFKASTFRANLHYDVILKDLIECVPERHLALFMMK 337
Query: 243 -------------DDAYADLCS--------------VLKANGDTCAIVYCLERTTCDELS 275
D D+CS V +G IVYC R C +++
Sbjct: 338 ALSRIEKKHNDTKDSTIVDVCSPSTSADKRESHGQRVFTGSG----IVYCRTREECGKMA 393
Query: 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335
L+ G+ AYHAGL++K R SV + W+ + V+ AT++FGMGID+ DVR+V H+
Sbjct: 394 MRLTEEGVPACAYHAGLSNKVRDSVQEKWMKNEIPVLAATISFGMGIDKADVRVVVHWTA 453
Query: 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKS 395
+++ A+YQESGRAGRD S +YY DDR+ + F+++++ K TR + K
Sbjct: 454 SQNLAAYYQESGRAGRDGKRSFCRIYYSRDDRQLLNFLINQDIRK------TRAKKIDKK 507
Query: 396 ISD---------FSQMVDYCEGSGCRRKKILESFGEQ 423
+ D F +M+++CE GCR + FG++
Sbjct: 508 LIDEQIKAAQHGFEKMIEFCEKPGCRHVAFAKYFGDE 544
>gi|261494329|ref|ZP_05990823.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261309978|gb|EEY11187.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. OVINE]
Length = 599
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/399 (41%), Positives = 243/399 (60%), Gaps = 22/399 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L FG+ +FRD Q + I AVL RDC +M TGGGKS+CYQ+PAL GI LV+SP
Sbjct: 6 ISVLNNVFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L GI +L+STQT++ + + + SG+ L+LLY++PE T GF
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ S ++ +A+DEAHC+S WGHDFRP Y L LRN PDVP++ALTATA P
Sbjct: 124 FHFI----SLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPDVPLMALTATADPT 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L +P + SF+RPN+ Y V ++K L L + IVY
Sbjct: 180 TRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPL-----EQLIKFISKQQGKSGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R +E++ LSA IS YHAG++ + R V + + Q+VVAT+AFGMGI++
Sbjct: 235 CNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ IL + ++
Sbjct: 295 SNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRN 354
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
++ ++I DF+ E CRR +L FGE
Sbjct: 355 I---KQHKLQAIGDFA------ESQTCRRLVLLNYFGEH 384
>gi|347761952|ref|YP_004869513.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580922|dbj|BAK85143.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 611
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 161/391 (41%), Positives = 240/391 (61%), Gaps = 17/391 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 19 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 79 QVAALRQLGVNAGALHSELEADEAARVRSDLVAGR--LDILYVSPERLLSPGMLERLGRL 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P VP +ALTATA + + D++E
Sbjct: 137 ----TLSVIAIDEAHCISAWGHEFRPEYRELAALPQHFPHVPRIALTATADARTRSDILE 192
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L ++L + +IVYC R+ +
Sbjct: 193 ALAMPDATVLKASFHRPNLDIAVRPKT---SELRQLTAILDRHRGAASIVYCGSRSKTER 249
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G + +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 250 VARSLAGKGYAALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 309
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + ++Q R
Sbjct: 310 DMPSSPEGYYQQIGRAGRDGEQAETVLLYGGDDMARARYWLEQSNAPDAQKRIMSAR--- 366
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
M+ E +GCR + +L FGE++
Sbjct: 367 -----LEAMIALTETTGCRTQSLLSCFGEEL 392
>gi|198454689|ref|XP_001359676.2| GA19957 [Drosophila pseudoobscura pseudoobscura]
gi|198132910|gb|EAL28826.2| GA19957 [Drosophila pseudoobscura pseudoobscura]
Length = 1349
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 241/403 (59%), Gaps = 15/403 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 577 LMHGLSYSFGLKSFRPNQLQVINATLLRNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 636
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS M IY DL+S P ++LLYVTPE ++++
Sbjct: 637 PLKSLIFDQINKLASLDICSKSLSGDVAMADVMAIYRDLESHPPMVKLLYVTPEKISSSA 696
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L +++ ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 697 RFQDILDTLNANNYISRFVIDEAHCVSQWGHDFRPDYKKLGILKKRFPNVPTIALTATAT 756
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261
P+V+ D++ L L+N SSFNR NL Y+V K +DD A + ++
Sbjct: 757 PRVRLDILSQLNLKNCKWFLSSFNRSNLRYKVLPKKGASTIDDMSA---YIRTKPPNSSG 813
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R CDE++ + G+ AYHAGL D R DW++++ +V+ AT+AFGMG
Sbjct: 814 IIYCLSRKECDEVAKKMCKDGVRAVAYHAGLTDSEREGRQKDWLTNKIRVICATIAFGMG 873
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ ++ ++
Sbjct: 874 IDKPDVRFVLHYSLPKSIEGYYQEAGRAGRDGEVADCILYYNYSDMLRLKKMMDGDK--- 930
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + K I + ++V YCE + CRR + L+ FGE
Sbjct: 931 ----ALQYNVKKMHIDNLYRIVGYCENITDCRRAQQLDYFGEH 969
>gi|440227317|ref|YP_007334408.1| ATP-dependent DNA helicase RecQ [Rhizobium tropici CIAT 899]
gi|440038828|gb|AGB71862.1| ATP-dependent DNA helicase RecQ [Rhizobium tropici CIAT 899]
Length = 626
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 237/401 (59%), Gaps = 23/401 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A + +L+ +G++ FR KQ I+ V+SG D L PTG GKS+C+QIPAL + GI +VV
Sbjct: 26 APLDVLKRVYGYSAFRGKQQQVIEHVVSGGDAVVLFPTGAGKSLCFQIPALCRDGIGIVV 85
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM +QV +K+ GI L+S+ + + + +Y + +GK L LLYVTPE AT
Sbjct: 86 SPLIALMRDQVEAMKQLGIRAAALNSSLSREEASDVYRAISAGK--LDLLYVTPERIATE 143
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
GF L R + L AIDEAHC+S WGHDFRP YR L L P VP +ALTATA
Sbjct: 144 GFCQML----GRAKIALFAIDEAHCVSQWGHDFRPEYRDLGRLAELFPGVPRIALTATAD 199
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P + D++E L L + V +SF+RPN+ YE+ +D L L+ + IVY
Sbjct: 200 PHTRDDIIERLALDDAKVFTTSFDRPNITYEIVERD---QPRQQLLRFLEGHRGDSGIVY 256
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R ++ + +L+ GI YHAG++ R + D ++ +VATVAFGMGID+
Sbjct: 257 CLSRAKVEDTAEWLNGQGIRALPYHAGMDRALRDANQDAFLKEEDLCLVATVAFGMGIDK 316
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKN 381
+VR V H ++P S+EA+YQE+GRAGRD LPS + YGM D R RM ++
Sbjct: 317 PNVRYVAHLDLPGSVEAYYQETGRAGRDGLPSNVWMAYGMADVIQRGRM-----IDEGGA 371
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
S+ ER+ + ++ CE +GCRR+ IL FGE
Sbjct: 372 SEEIKRVERAK------LNALLAICETAGCRRQSILSHFGE 406
>gi|317504966|ref|ZP_07962914.1| ATP-dependent helicase RecQ [Prevotella salivae DSM 15606]
gi|315663848|gb|EFV03567.1| ATP-dependent helicase RecQ [Prevotella salivae DSM 15606]
Length = 725
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 237/401 (59%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG +F+ Q I +++ G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LLQQLKHYFGFDKFKGDQEAIILSLMEGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E G +L+S+ ++ +++ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGMSEDGTVAHYLNSSLNKSAIQQVMDNVRSGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
++ LK IH ++ AIDEAHCIS WGHDFRP YR + N + + P++ALTAT
Sbjct: 125 KEEYVEFLKSIH----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGNAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNR NL+YEVR K +D + ++ + I
Sbjct: 181 ATDKVRTDIKKSLGIMDAHEFKSSFNRANLYYEVRPK--TNDVDKQIIKFIRQHEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELAEVLKANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYAQKDLKKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 351 EGKPVAEQDIGRQL--LQETAAYAESSVCRRKMLLHYFGEE 389
>gi|160882388|ref|ZP_02063391.1| hypothetical protein BACOVA_00337 [Bacteroides ovatus ATCC 8483]
gi|156112201|gb|EDO13946.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus ATCC 8483]
Length = 749
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P++ G +V+S
Sbjct: 30 LTDELKKYFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSVLMEGTAIVIS 89
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 90 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 146
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 147 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 202
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 203 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 260
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 261 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVDVIVATIAFGMG 320
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 321 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 372
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 373 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 412
>gi|163787884|ref|ZP_02182330.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
gi|159876204|gb|EDP70262.1| putative ATP-dependent DNA helicase [Flavobacteriales bacterium
ALC-1]
Length = 733
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 241/399 (60%), Gaps = 24/399 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ Q + I+ V++G + F +MPTGGGKS+CYQ+PAL K G +VVSPLIA
Sbjct: 12 LKKYFGFSAFKGLQEEVIKNVVAGNNTFVIMPTGGGKSLCYQLPALIKEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +VK ++ +D+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRAVSDHDGVAHVLNSSLNKTEVK-RVKDDIVNG--ITKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAA 204
++ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D+PI+ LTATA
Sbjct: 129 YVEFLRTVK----ISFMAVDEAHCISEWGHDFRPEYRNLKTIIKRIGDDIPIVGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D+++SL + N + K+SFNRPNL+YEVR K + AD+ +K N IVY
Sbjct: 185 PKVQEDILKSLGMPNAVTFKASFNRPNLYYEVRPK--TKNVDADIIRFVKQNDGKSGIVY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L G+ YHAGL+ K R D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGVKAVPYHAGLDAKTRVKHQDMFLMEDTDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLEKFMSGK------- 355
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ ++V + E S RRK IL FGE+
Sbjct: 356 -PVAEQEIGHAL--LQEVVAFAETSVSRRKFILHYFGEE 391
>gi|429724940|ref|ZP_19259801.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 473 str.
F0040]
gi|429151402|gb|EKX94270.1| ATP-dependent DNA helicase RecQ [Prevotella sp. oral taxon 473 str.
F0040]
Length = 728
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 241/403 (59%), Gaps = 25/403 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG FR+ Q I+++++G D F LMPTGGGKS+CYQ+PAL G+ +VVS
Sbjct: 7 LLEPLKLYFGFETFRNNQEAIIRSLMAGHDVFVLMPTGGGKSICYQLPALLMEGVAIVVS 66
Query: 86 PLIALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV +++ ++ + T I D+ +GK +LLYV+PEL
Sbjct: 67 PLIALMKNQVDAVRQTRADNSVAHYIYAALTKHEILDIMNDVTTGK--TKLLYVSPELFN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
F+ LK + ++ +A+DEAHCIS WGHDFRP YRKL + N + VPI+ALTAT
Sbjct: 125 KDSFVDFLKTVR----VSFIAVDEAHCISEWGHDFRPEYRKLRPIINEIGQVPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ ++L + L KSSFNRPNL+YEVR K D D+ +K + I
Sbjct: 181 ATDKVRMDIKKNLGIPEALEFKSSFNRPNLYYEVRQKTAKVDY--DVIRFIKNHPHVSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L I+ AYHAGL+ + RS+ D ++ V+VAT+AFGMGI
Sbjct: 239 IYCLSRKRVEELTEVLRTNDINACAYHAGLDAQVRSNTQDAFLKEDIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYSHKDLQKLE----------- 347
Query: 383 QSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + S++ I + Y E + CRRK +L FGEQ
Sbjct: 348 -KFMEGKPISEQDIGRQLLKETAAYAESAVCRRKLLLHYFGEQ 389
>gi|237719061|ref|ZP_04549542.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
gi|293369500|ref|ZP_06616079.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
gi|299148144|ref|ZP_07041206.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_23]
gi|336415756|ref|ZP_08596095.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|423292370|ref|ZP_17270948.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
gi|229451440|gb|EEO57231.1| ATP-dependent DNA helicase recQ [Bacteroides sp. 2_2_4]
gi|292635385|gb|EFF53898.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CMC 3f]
gi|298512905|gb|EFI36792.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 3_1_23]
gi|335940635|gb|EGN02502.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus 3_8_47FAA]
gi|392661779|gb|EIY55352.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL02T12C04]
Length = 726
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P++ G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSVLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|441506545|ref|ZP_20988513.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
gi|441425751|gb|ELR63245.1| ATP-dependent DNA helicase RecQ [Photobacterium sp. AK15]
Length = 613
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/397 (41%), Positives = 243/397 (61%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q + I+AV GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 19 QILQDVFGYQTFRTGQQEVIEAVAEGRDCLVIMPTGGGKSLCYQIPALMCDGLTLVVSPL 78
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A L+STQ+ + + Y + G+ ++L YV+PE T FM
Sbjct: 79 ISLMKDQVDQLKANGVAAACLNSTQSREAMQETYRAMQDGE--VKLAYVSPERVMTREFM 136
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L+ + L+LVA+DEAHCIS WGHDFRP Y L +L+ + +PI+ALTATA
Sbjct: 137 ERLRDMP----LSLVAVDEAHCISQWGHDFRPEYAALGTLKQHFDQLPIIALTATADETT 192
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +P + SF+RPN+ Y + +YK + + L S L+ C IVYC
Sbjct: 193 RQDILSRLSLTDPHIYLGSFDRPNIRYTLQEKYKPM-----SQLSSYLRGVRGQCGIVYC 247
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++++ L GI AAYHAGL R+ V +D+ +VVATVAFGMGI++
Sbjct: 248 NSRKRVEQITEKLCESGIRAAAYHAGLEFDERARVQEDFQRDDIHIVVATVAFGMGINKP 307
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H++IP+++E++YQE+GRAGRD LP++++++Y D + L + + +
Sbjct: 308 NVRFVVHYDIPRNIESYYQETGRAGRDGLPAEAVMFYDPSDLAWLRRCLDEKEDGAQKQI 367
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + + M + E CRR+ +L FGE
Sbjct: 368 ESHK---------LNAMGAFAEAQTCRRQVLLNYFGE 395
>gi|224025973|ref|ZP_03644339.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
gi|224019209|gb|EEF77207.1| hypothetical protein BACCOPRO_02724 [Bacteroides coprophilus DSM
18228]
Length = 727
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/405 (41%), Positives = 244/405 (60%), Gaps = 29/405 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG F+ Q I+ +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEQLKKYFGFDTFKGNQEAIIRNLLEGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-L 140
PLIALM+NQV ++ E G+A F++S+ T ++ D+ SGK +LLYV PE L
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLTKSAIDQVKSDILSGKT--KLLYVAPESL 123
Query: 141 TATP--GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
T GF+ +K ++ A+DEAHCIS WGHDFRP YR++ + N + P++A
Sbjct: 124 TKEENVGFLKHVK-------ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIA 176
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKV+ D+ ++L + + + KSSFNRPNL+YEVR K D D+ ++ N +
Sbjct: 177 LTATATPKVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRAKTANVDR--DIIKFIRQNEE 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +EL+ L A GI YHAG++ RS+ D ++ V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEELAEVLQANGIKARPYHAGMDSATRSANQDAFLKEDIDVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 295 GMGIDKPDVRFVIHYDVPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE------- 347
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 348 -KFMQGKPVSEQEIGKQL--LLETAAYAESSVCRRKILLHYFGEE 389
>gi|357383276|ref|YP_004898000.1| ATP-dependent DNA helicase RecQ [Pelagibacterium halotolerans B2]
gi|351591913|gb|AEQ50250.1| ATP-dependent DNA helicase RecQ [Pelagibacterium halotolerans B2]
Length = 629
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/422 (40%), Positives = 246/422 (58%), Gaps = 25/422 (5%)
Query: 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTG 63
SP++M S + P + +LR FG FR +Q + ++ V++G D L PTG
Sbjct: 13 SPVSMSLFSNATASDPAPADG--LDILRSVFGLDAFRGQQQEVVEHVMAGGDAVVLFPTG 70
Query: 64 GGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYED 123
GKS+CYQIPA+ +PG+ +++SPLIALM +QV LK+ G+ L+S+ T + + +
Sbjct: 71 AGKSLCYQIPAIGRPGVGVIISPLIALMRDQVEALKQAGVRAAALNSSLTPEENRNVRQA 130
Query: 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183
L G+ L LLYV PE A GF+ L + + L AIDEAHC+S WGHDFRP YR+
Sbjct: 131 LRDGQ--LDLLYVAPERLAATGFLDLLASVD----IGLFAIDEAHCVSQWGHDFRPEYRE 184
Query: 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243
L+ LR P VP +ALTATA P + D++E L L++ + SSF+RPN+ Y + +
Sbjct: 185 LAKLRELFPHVPRVALTATADPTTRADLIERLGLEDAQLFISSFDRPNIGYSIVERS--- 241
Query: 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303
+A + L L + IVYCL R + ++ +L+ GI+ YHAGL+ R+ D
Sbjct: 242 NARSQLLDFLGRHKGESGIVYCLSRAKVEAVAEFLTEKGIAALPYHAGLDAGVRARNQDA 301
Query: 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
++ +VATVAFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD PS++ + YG
Sbjct: 302 FLKEDAVCLVATVAFGMGIDKPDVRYVAHMDLPSSIEAYYQETGRAGRDGQPSEAWMCYG 361
Query: 364 MDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
+ D RRRM I N + + + S ++ CE +GCRR+ +L F
Sbjct: 362 LSDVSQRRRM--IAEGNAPDDVKRLEN---------NKLSALLGVCETAGCRRQAVLAHF 410
Query: 421 GE 422
GE
Sbjct: 411 GE 412
>gi|356541884|ref|XP_003539402.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Glycine max]
Length = 1534
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 174/431 (40%), Positives = 251/431 (58%), Gaps = 21/431 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 780 FGNHSFRPNQREIINASMSGCDVFVLMPTGGGKSLTYQLPALIHPGITLVISPLVSLIQD 839
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I +LS+ + I +L+S +LLYVTPE A + + L
Sbjct: 840 QIMHLLQANIPAAYLSANMEWTEQQDILRELNSDYCKYKLLYVTPEKVARSDNLLRHLDN 899
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H R LL + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 900 LHFRELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 959
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL Y V + K L+D + ++ N D C IVYCL R
Sbjct: 960 QALGLVNCIIFRQSFNRPNLRYSVIPKTKKCLED----IDKFIRENHFDECGIVYCLSRM 1015
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G CA YH ++ R+SV W ++ ATVAFGMGI++ DVR
Sbjct: 1016 DCEKVAEKLQECGHKCAFYHGSMDPVQRASVQKQWSKDEINIICATVAFGMGINKPDVRF 1075
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ +LS+ + S S
Sbjct: 1076 VIHHSLPKSIEGYHQECGRAGRDGQHSSCVLYYTYSDYIRVKHMLSQGAIEQSSMTSGYN 1135
Query: 390 RSS--------KKSISDFSQMVDYCEGS-GCRRKKILESFGEQVLG--CVASVTH--RVV 436
RS+ + + + +MV YCE CRR L FGE+ C+ + + ++
Sbjct: 1136 RSNMINSGRILETNTENLVRMVSYCENDVDCRRLLQLAHFGEKFNSSTCLKTCDNCLKIT 1195
Query: 437 SFISPFILLIS 447
SFI + I+
Sbjct: 1196 SFIEKDVTEIA 1206
>gi|329113513|ref|ZP_08242294.1| ATP-dependent DNA helicase RecQ [Acetobacter pomorum DM001]
gi|326697338|gb|EGE48998.1| ATP-dependent DNA helicase RecQ [Acetobacter pomorum DM001]
Length = 641
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 175/414 (42%), Positives = 249/414 (60%), Gaps = 20/414 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG FR Q A++ V+ GRD LMPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 45 EVLQAVFGFPGFRSLQAQAVECVMEGRDTLVLMPTGGGKSVCYQIPALCREGMGLVISPL 104
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S KI DL +G+ + LLY++PE + G +
Sbjct: 105 IALMDDQVAGLRQLGINAAALHSELEGDEAAKIRSDLANGR--IDLLYISPERLLSSGTL 162
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +I L+++AIDEAHCIS+WGH+FRP YR L++L + P VP +ALTATA +
Sbjct: 163 DRLVRIP----LSVIAIDEAHCISAWGHEFRPEYRALTALPRHFPHVPRIALTATADERT 218
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ +L + + VL SSF+RPNL V+ K L + L+ + D +IVYC
Sbjct: 219 REDILTALDMPHAEVLVSSFHRPNLNISVQPKA---SETRQLITALERHKDAASIVYCGS 275
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G AYHAGL+ + + L + S V+VATVAFGMGIDR DV
Sbjct: 276 RARTERMAASLRERGWPALAYHAGLSPIEKRAALLRFRSGEPLVIVATVAFGMGIDRPDV 335
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS +LL YG +D R + L ++ + S+
Sbjct: 336 RAVVHLDMPSSPEAYYQQIGRAGRDGLPSDTLLLYGGEDMARARYWLDQSAAPESEKRIM 395
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL---GCVASVTHRVVSF 438
R R M+ E +GCR + +L FGE++ G + H V++F
Sbjct: 396 RSR--------LEAMIALTETTGCRTRALLHCFGEELAEPCGHCDNCLHPVLTF 441
>gi|434393955|ref|YP_007128902.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 7428]
gi|428265796|gb|AFZ31742.1| ATP-dependent DNA helicase RecQ [Gloeocapsa sp. PCC 7428]
Length = 602
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 250/403 (62%), Gaps = 16/403 (3%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L L+ +FG+ FR Q ++ L RD +MPTGGGKS+C+Q+PAL K G+ +VV
Sbjct: 6 SLESALKHYFGYDSFRPGQRCIVEQALQNRDLLVVMPTGGGKSLCFQLPALLKKGLTVVV 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
SPLIALM++QV L++ GI F+ SS V+T+ + + SGK ++LLY+ PE +
Sbjct: 66 SPLIALMQDQVEALQDNGIGATFINSSLSAYHVRTR-EQAILSGK--VKLLYIAPERLLS 122
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F+ L +H + ++ AIDEAHC+S WGHDFRP YR+L LR+ VP +ALTATA
Sbjct: 123 EKFLPFLDLVHHQMGISAFAIDEAHCVSEWGHDFRPEYRQLQQLRHRFSGVPTIALTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D+++ L L P V +SFNR NLFYEV+ K +Y L +++ I+
Sbjct: 183 TERVRQDIIQQLGLVEPSVHIASFNRQNLFYEVQPKQ--KQSYQQLLQLIRQQSGA-GII 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R DE++ L GI+ YHAGL+D+ R++ +I QV+VAT+AFGMGI+
Sbjct: 240 YCLSRRRVDEIAFKLKNDGIAALPYHAGLSDRDRTANQTSFIRDDVQVMVATIAFGMGIN 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++P+++E++YQESGRAGRD P++ L+ D + +E+++++ Q
Sbjct: 300 KPDVRFVIHYDLPRNLESYYQESGRAGRDGEPARCTLFLNYGDIKTIEYLIAQKPDPQEQ 359
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ Q++DY EG+ CRR L FGE+ G
Sbjct: 360 RIAKQQ---------LRQVIDYAEGTDCRRTIQLSYFGERFSG 393
>gi|442772186|gb|AGC72851.1| ATP-dependent DNA helicase RecQ [uncultured bacterium A1Q1_fos_97]
Length = 607
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 239/397 (60%), Gaps = 22/397 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q D I+A+ SG+D LMPTGGGKS+C+QIPA+ PG +VVSPLI+
Sbjct: 10 LKRYFGYDQFRPLQADIIRAIFSGKDALVLMPTGGGKSVCFQIPAVTLPGTCIVVSPLIS 69
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL+ GIA F++S + + ++ E +G+ L LLYV+PE + F+S
Sbjct: 70 LMKDQVEGLRANGIAAAFINSAIDSREQLRVEESFYAGE--LDLLYVSPEKLVSGNFVSI 127
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK RG +NL AIDEAHCIS+WGHDFRP Y ++ L+ + P VP++ALTATA +K
Sbjct: 128 LK----RGKINLFAIDEAHCISAWGHDFRPEYTQMGMLKQHFPRVPVVALTATADKLTRK 183
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L+ P + +SF+RPNL EVR D ++ + I+Y L R
Sbjct: 184 DIVDQLKLEEPGIFIASFDRPNLSLEVRPGQQRLQQIEDF---IRKHPKQAGIIYTLSRK 240
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
++++ L G AYHAGL+ RS + D +I+ ++ ATVAFGMGID+ +VR
Sbjct: 241 ATEDIADKLKQKGFKAEAYHAGLSPDRRSKIQDHFINDNLHIICATVAFGMGIDKSNVRW 300
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL--SKNQSKNSQSFST 387
V H+N+PK++E +YQE GRAGRD + +LL+Y D + I+ +N ++N
Sbjct: 301 VIHYNLPKNLEGYYQEIGRAGRDGAKADTLLFYSFADVSMLRDIIQNGENAAQNEIQLVK 360
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER M Y E CRR+ +L F E +
Sbjct: 361 LER-----------MQQYAESLACRRRILLAYFSENL 386
>gi|440733531|ref|ZP_20913242.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
gi|440360758|gb|ELP98016.1| DNA helicase superfamily II protein [Xanthomonas translucens
DAR61454]
Length = 602
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 240/389 (61%), Gaps = 17/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q D ++ V +G+D LMPTGGGKS+CYQIP+L + G LV+SPLIALM++
Sbjct: 13 FGYDQFRGPQQDIVEHVAAGQDALVLMPTGGGKSLCYQIPSLLRDGTGLVISPLIALMQD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ E+L+ST + ++ +L +G+ L LLYV PE TP F+S L+
Sbjct: 73 QVEALRQLGVRAEYLNSTLDAETAQRVERELLAGE--LDLLYVAPERLLTPRFLSLLE-- 128
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
R + L AIDEAHC+S WGHDFRP YR+L+ L P +P +ALTATA P Q+++ E
Sbjct: 129 --RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPPTQREIAE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L SSF+RPN+ Y V K+ ++ L L+A+ + IVYC+ R +E
Sbjct: 187 RLDLTQARHFVSSFDRPNIRYTVVQKE---NSKRQLLDFLRAHRGSAGIVYCMSRRKVEE 243
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+ +L+ G++ YHAGL + R+ ++ V+ AT+AFGMGID+ DVR V H
Sbjct: 244 TAEFLAKEGLNALPYHAGLPAEVRAGNQRRFLREDGIVMCATIAFGMGIDKPDVRFVAHT 303
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++PKS+E +YQE+GRAGRD +++ L YG+ D +L K + ++ R+R +
Sbjct: 304 DLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLKQMIEKGEAGEDRKRVER 358
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + Q++ YCE CRR+ +L FGE
Sbjct: 359 RKL---DQLLGYCESMQCRRQVLLAGFGE 384
>gi|383114099|ref|ZP_09934864.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
gi|423294544|ref|ZP_17272671.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
gi|313694193|gb|EFS31028.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D2]
gi|392675735|gb|EIY69176.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus CL03T12C18]
Length = 726
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P++ G +V+S
Sbjct: 7 LTDELKKYFGFNKFKGNQEAIINNLLDGKDTFVLMPTGGGKSLCYQLPSVLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ R+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLTRTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|455737381|ref|YP_007503647.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
gi|455418944|gb|AGG29274.1| ATP-dependent DNA helicase RecQ [Morganella morganii subsp.
morganii KT]
Length = 608
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 165/396 (41%), Positives = 241/396 (60%), Gaps = 22/396 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ QFR Q D I V GRDC +MPTGGGKS+CYQIPAL PG+ +VVSPLI
Sbjct: 16 ILRQVFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ G+ +L+S QT Q + K+ E + + ++LLYV PE F+
Sbjct: 76 SLMKDQVDQLRLLGVEAGYLNSAQTAQEQQKVLEGCHNNR--IKLLYVAPERLLMSSFIR 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L++ +L+A+DEAHCIS WGHDFRP Y + LR +LP VP++ALTATA +
Sbjct: 134 QLQQWQP----SLLAVDEAHCISQWGHDFRPEYCAIGELRQHLPGVPVIALTATADNTTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D+ L L +PL+ SSF+RPN+ Y + +YK A+ L ++ C I+YC
Sbjct: 190 SDICSRLRLSDPLIHISSFDRPNIRYTLVEKYK-----AFDQLWMFVRGQKGQCGIIYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++++A L G+S AAYHAGL++ R V D ++ QVVVATVAFGMGI++ +
Sbjct: 245 SRNKVEDVAARLQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF+IP+++E++YQE+GRAGRD + ++++L+Y D + L + + +
Sbjct: 305 VRFVAHFDIPRNIESYYQETGRAGRDGVSAEAVLFYDPADMAWLRRCLDEKPAGPQKDIE 364
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + M + + CRR +L FGE
Sbjct: 365 QHK---------LNAMGAFAQAQTCRRLVLLNYFGE 391
>gi|410624460|ref|ZP_11335257.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
gi|410155967|dbj|GAC30631.1| ATP-dependent DNA helicase RecQ [Glaciecola pallidula DSM 14239 =
ACAM 615]
Length = 627
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 159/397 (40%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG+A+FR Q++ I +L+G+D L+PTGGGKS+CYQ+PALA GI +VVSPL
Sbjct: 37 KILKDTFGYAEFRAGQMEVIDKILNGQDALILLPTGGGKSLCYQVPALALEGITIVVSPL 96
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L +G+ +L+S+Q + +I E L G+ L LLYV PE F+
Sbjct: 97 ISLMQDQVQQLTAQGVKAAYLNSSQDAEESQQITEQLFRGE--LDLLYVAPERLLKSYFL 154
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L+++ ++L+A+DEAHC+S WGHDFR YR+L L++ +VP +ALTATA
Sbjct: 155 NSLQRVK----VSLIAVDEAHCVSHWGHDFRQDYRQLGRLKSQFQNVPFIALTATADHAT 210
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
Q D+ L L+NP V K F+RPN+ Y + +YK + + + +K IVYC
Sbjct: 211 QVDIQHQLQLENPFVFKGGFDRPNIRYNLLAKYK-----GFDQVVAFVKQQDGAAGIVYC 265
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R D+L+ L + GI C AYHAG + R V ++ QVV+ATVAFGMGI++
Sbjct: 266 NSRAKVDDLTQRLQSAGIKCDAYHAGRDTATREFVQTQFLKDDLQVVIATVAFGMGINKS 325
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H ++P+S+E++YQE+GRAGRD +P+++LL + D R++ +S + +
Sbjct: 326 NVRFVVHHDVPRSVESYYQETGRAGRDGMPAEALLLFDERDAARIKQWISTGTAPDRYDI 385
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ F M + E CRR+ +L F +
Sbjct: 386 EMHK---------FEAMEAFAEAQTCRRQVLLNYFSD 413
>gi|322708811|gb|EFZ00388.1| QDE3 protein [Metarhizium anisopliae ARSEF 23]
Length = 1697
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/407 (40%), Positives = 241/407 (59%), Gaps = 17/407 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K+L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ + G + +V
Sbjct: 827 KMLKDRFRMKGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAIVRTGKTRGVTIV 886
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K +I D P + LLYVTPE+
Sbjct: 887 VSPLLSLMQDQVDHMKGLGIQAVAFNGGCSAEYKRQIMSTFDEPSPEHFIELLYVTPEMV 946
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ ++ RG + IDEAHC+S WGHDFRP Y+ + +R P VP +ALT
Sbjct: 947 SMNSAFNNAMQTLYQRGKFARLVIDEAHCVSQWGHDFRPDYKTIGQVRMRFPRVPFMALT 1006
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N V SFNRPNL+YEVR K +A + S++ A +T
Sbjct: 1007 ATATQNVIVDIKHNLNMANCQVFSQSFNRPNLYYEVRTKKSHANATESIASLINAKYHNT 1066
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY L R +E++ L+ GI+ YHA ++ +A+ V W +VVVAT+AFG
Sbjct: 1067 TGIVYTLSRKQAEEVAQTLAGYGIAARHYHAAIDPQAKVDVQRSWQKGDIKVVVATIAFG 1126
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1127 MGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKADIRVLKKMIADGDG 1186
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVL 425
N+Q ++ + +++ +C+ S CRR ++L FGE +
Sbjct: 1187 NNAQ--------KERQMVMLNRVTAFCDNKSDCRRTEVLRYFGEDFV 1225
>gi|124484849|ref|YP_001029465.1| hypothetical protein Mlab_0020 [Methanocorpusculum labreanum Z]
gi|124362390|gb|ABN06198.1| ATP-dependent DNA helicase, RecQ family [Methanocorpusculum
labreanum Z]
Length = 493
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 165/404 (40%), Positives = 240/404 (59%), Gaps = 14/404 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ + + L +F H FR Q + I+ ++SGRD +M TGGGKS+CYQ+PAL G+ +V
Sbjct: 3 KGIQQTLEKYFHHQTFRPNQQEIIEKIVSGRDVLAVMATGGGKSLCYQLPALMLDGMTIV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLIALM++QV L +G+ E L+S QT + ++ +D+ GK +R+LYV+PE T
Sbjct: 63 ISPLIALMKDQVDSLSNQGVTVETLNSLQTYDERRRVEQDMRDGK--VRILYVSPERAVT 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P F + L S + L A+DEAHCIS WGH FRP YR++ LR+ P VPI A TATA
Sbjct: 121 PAFFATL----SGCKVALFAVDEAHCISMWGHQFRPEYREIKHLRDKFPGVPIAAFTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+V++D++ L L +P SF+R NL Y V + + S + A+ D I+
Sbjct: 177 TLRVREDIVNELRLNDPAEFIGSFDRRNLRYSVFAEPNAQVRMQKIISYVTAHKDDPGII 236
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC R + +EL+ L I YHAGL RS V + ++++ +V+ ATVAFGMGID
Sbjct: 237 YCFSRASTEELAERLRKVHIMANPYHAGLPTPERSRVQEGFLNNSIRVICATVAFGMGID 296
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PK +E++YQE+GRAGRD + LL+Y DRR++E +L + + +
Sbjct: 297 KPDVRYVIHAHMPKDIESYYQETGRAGRDGKAGECLLFYSGGDRRKIENMLEREFTDKKK 356
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
S RE+ QM YC CRR+ +L F E++ C
Sbjct: 357 SEIAREK--------LDQMYAYCTAKSCRRQLLLSYFDEEIQPC 392
>gi|146298045|ref|YP_001192636.1| ATP-dependent DNA helicase RecQ [Flavobacterium johnsoniae UW101]
gi|146152463|gb|ABQ03317.1| ATP-dependent DNA helicase, RecQ family [Flavobacterium johnsoniae
UW101]
Length = 731
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 241/401 (60%), Gaps = 25/401 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I ++L + F +MPTGGGKS+CYQ+PAL + G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVITSILGKTNTFVIMPTGGGKSLCYQLPALIQDGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ E GIA L+S+ T ++ +D+ SG +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSENGIA-HVLNSSLTKTEIAQVKKDISSGLT--KLLYVAPESLTK 126
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+++ L+ + ++ VAIDEAHCIS WGHDFRP YR L ++ L VPI+ LTATA
Sbjct: 127 EEYVAFLQSVP----ISFVAIDEAHCISEWGHDFRPEYRNLRTIIKQLGKVPIIGLTATA 182
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
PKVQ+D++++L + + K+SFNRPNL+YEVR K +D+ +K + I+
Sbjct: 183 TPKVQEDILKNLDMSDANTFKASFNRPNLYYEVRTK--TKSIESDIIRFIKQHKGKSGII 240
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R + ++ L GIS YHAGL+ K R+ D ++ VVVAT+AFGMGID
Sbjct: 241 YCLSRKKVESIAEVLQVNGISAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGID 300
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKNS 382
+ DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E F+ K ++
Sbjct: 301 KPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAYYSYKDVEKLEKFMSGKPVAEQE 360
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
F+ ++V Y E S RRK +L FGE+
Sbjct: 361 IGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|392553532|ref|ZP_10300669.1| ATP-dependent DNA helicase [Pseudoalteromonas spongiae
UST010723-006]
Length = 607
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 163/410 (39%), Positives = 247/410 (60%), Gaps = 22/410 (5%)
Query: 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA 74
Q +P+ +++ +L FG+ QFR Q I AVL+G+DC LMPTGGGKS+CYQ+PA
Sbjct: 5 QATQPVMQQQTPHSVLSSVFGYKQFRAGQEQVIDAVLAGQDCLVLMPTGGGKSLCYQVPA 64
Query: 75 LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
L PGI +VVSPLI+LM++QV LK +G+A +++++Q+ + + IY+ L G+ +++L
Sbjct: 65 LLLPGITIVVSPLISLMQDQVAQLKAQGVAAAYINNSQSREEQQLIYQGLHQGQ--IKIL 122
Query: 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
YV PE T F ++L+ ++ + L AIDEAHC+S WGHDFRP Y +L L+ +
Sbjct: 123 YVAPERLLTDDFSTRLQHLN----IGLFAIDEAHCVSHWGHDFRPHYYRLGQLKQRFSHI 178
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSV 252
PI+ALTATA + D++ L L N + SF+RPN+ Y E ++K L + L
Sbjct: 179 PIMALTATADIATRNDIVMQLGLTNAHIYTGSFDRPNIRYTIEEKFKPL-----SQLMRF 233
Query: 253 LKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
LK I+YC R D+++ L G + A+YHAGL ++ RS V + + +V
Sbjct: 234 LKEQKGQSGIIYCSSRKRVDDIAEKLVDAGYNAASYHAGLENEQRSFVQNAFARDDIHIV 293
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
VATVAFGMGI++ +VR V H++IPK++E++YQE+GRAGRD L +++++Y+ D R++
Sbjct: 294 VATVAFGMGINKPNVRFVIHYDIPKNIESYYQETGRAGRDGLSAEAIMYFDPADVPRVKR 353
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ K F+ M + E CRR+ +L F E
Sbjct: 354 FFDD---------IPDEQRRKVEEQRFNAMASFAEAQTCRRQILLNYFSE 394
>gi|340351994|ref|ZP_08674884.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
gi|339615729|gb|EGQ20399.1| ATP-dependent helicase RecQ [Prevotella pallens ATCC 700821]
Length = 727
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 237/402 (58%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L++ FG +F+ Q IQ VL+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKYFFGFDKFKGAQEAIIQNVLAGNDTFVLMPTGGGKSLCYQLPSLIMDGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ + D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKTEIDHVKADILNGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEESIEFFKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAVDLIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+++SL +++ KSSFNRPNL+YEVR K +D + +K N I
Sbjct: 181 ATDKVRTDIVKSLGIEDCAEFKSSFNRPNLYYEVRSKKNEEDTNRQIIKFIKQNPGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I YHAGL+ + RS DD++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLQANDIKAEPYHAGLDSETRSRTQDDFLMENIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +++Y SKN K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGQCIVFY------------SKNDLKKL 348
Query: 383 QSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGE 422
++F + +++ I + Y E S CRRK +L FGE
Sbjct: 349 ENFMDGKPVAEQDIGRQLLQETETYAESSVCRRKLLLHYFGE 390
>gi|320167845|gb|EFW44744.1| DEAD/DEAH box helicase [Capsaspora owczarzaki ATCC 30864]
Length = 1784
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 245/402 (60%), Gaps = 18/402 (4%)
Query: 28 KLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
K +R FG + FR QL+ I +SGR C LMPTGGGKS+CYQ PA+ G+ +VVSP
Sbjct: 825 KAMRKVFGLNKGFRTHQLEVINCTMSGRHCLVLMPTGGGKSLCYQNPAVISKGVTIVVSP 884
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPG 145
L++L+++QV L + I FLS +QT ++++Y +L +++Y+TPE ++ +
Sbjct: 885 LLSLIQDQVEALVQLNIGAVFLSGSQTEAEQSRVYLELSRQDERCKVVYMTPEKISHSTR 944
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S+L ++ L IDEAHC+S WGHDFRP Y++L L + P VP++ALTATA
Sbjct: 945 LLSQLDMLYQSKRLARFVIDEAHCVSQWGHDFRPDYKQLRMLHDRFPTVPVMALTATATE 1004
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD--LLDDAYADLCSVLKAN-GDTCAI 262
+V+ D+M+ L + + SFNR NL Y+V KD LDD + ++K I
Sbjct: 1005 RVRSDIMKQLNIHQAEIFVQSFNRENLRYQVYKKDKTTLDD----IARMIKKQWPKDSGI 1060
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R C+ ++ L GI+ YHAG++ R+ V DWI +RKQV+VAT+AFGMGI
Sbjct: 1061 VYCLSRKDCETVARELVQRGIAATFYHAGMDPGDRAVVQRDWIGNRKQVIVATIAFGMGI 1120
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
++ DVR V H+++PKS+E +YQESGRAGRD + ++YY D+ +ME ++ K S
Sbjct: 1121 NKPDVRYVFHYSLPKSLEGYYQESGRAGRDGYEAHCIMYYSYGDKSKMESMIEKGDSSAE 1180
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
Q ++ + ++M+ YCE CRR + L FGE+
Sbjct: 1181 QKRIHKD--------NLAKMIMYCENVVECRRVQQLAYFGEK 1214
>gi|402830902|ref|ZP_10879596.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. CM59]
gi|402283336|gb|EJU31854.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. CM59]
Length = 729
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/405 (43%), Positives = 248/405 (61%), Gaps = 28/405 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG + F+ KQ D I++++ G F LMPTGGGKS+CYQ+PAL K G +V+S
Sbjct: 8 LQKALKSIFGFSAFKGKQEDIIRSIMEGNHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 67
Query: 86 PLIALMENQVIGLKEKGIAG-----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
PLIALM+NQV ++ GI+G L+S+ T + ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDVVR--GISGTDKIAHVLNSSLTKGEIRTVMEDIRNG--DTKLLYVAPES 123
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILAL 199
+ L+ I+ ++ VA+DEAHCIS WGHDFRP YR + ++ L + +PI+AL
Sbjct: 124 LTKDEYADFLRTIN----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGIPIIAL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KVQ+D++++L + V KSSFNRPNL+YEVR K + +D+ +K
Sbjct: 180 TATATTKVQEDILKNLGIPQANVFKSSFNRPNLYYEVRPK--TKNINSDIIRFVKQRPGQ 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + +EL+ L GI+ YHAGL+ K R+ D ++ +VVVAT+AFG
Sbjct: 238 SGIIYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVEVVVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQ 378
MGID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E F++SK
Sbjct: 298 MGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVSK-- 355
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ +++ MV Y E S RRK IL FGE+
Sbjct: 356 -------PIAEQEVGQAL--LQDMVAYAETSSSRRKFILHYFGEE 391
>gi|298490702|ref|YP_003720879.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
gi|298232620|gb|ADI63756.1| ATP-dependent DNA helicase RecQ ['Nostoc azollae' 0708]
Length = 722
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 178/399 (44%), Positives = 249/399 (62%), Gaps = 16/399 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L++HFG+ QFR Q I+ L RD +MPTGGGKS+C+Q+PAL K G+ +VVS
Sbjct: 7 LEKALKYHFGYDQFRPGQRQIIEDALQNRDLMVVMPTGGGKSLCFQLPALLKSGLTVVVS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV L+ I+ FL+S+ E + +GK +RLLY+ PE +
Sbjct: 67 PLIALMQDQVEALRNNNISATFLNSSLNFYKVRSREEAIMNGK--VRLLYIAPERLISDK 124
Query: 146 FMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F+ L + + G+ N AIDEAHC+S WGHDFRP YR+L L+ PDV ALTATA
Sbjct: 125 FLPLLDVVKEKIGIANF-AIDEAHCVSEWGHDFRPEYRQLILLKKRYPDVTTTALTATAT 183
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D+++ L L+ P V +SFNR NL+YEVR K+ AYA+L +++ N + I+Y
Sbjct: 184 DRVRVDIIQQLGLKQPSVHIASFNRHNLYYEVRSKN--QRAYAELLEIVRENKGS-GIIY 240
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R DEL+ L I+ YHAGL+D RS +I +V+VAT+AFGMGI++
Sbjct: 241 CLTRKKVDELTFKLQNDKIAALPYHAGLSDDERSKNQTRFIRDDIRVMVATIAFGMGINK 300
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V HF++P+++E++YQESGRAGRD PS+ L++ D + +E+ S NQ + Q
Sbjct: 301 PDVRFVVHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFGDVKTIEW--SINQKTDLQ- 357
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ K Q++DY EG+ CRR L FGE+
Sbjct: 358 ----EKLIAK--QQLRQVIDYAEGTDCRRTIQLAYFGER 390
>gi|153852869|ref|ZP_01994306.1| hypothetical protein DORLON_00288 [Dorea longicatena DSM 13814]
gi|149754511|gb|EDM64442.1| ATP-dependent DNA helicase RecQ [Dorea longicatena DSM 13814]
Length = 624
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 246/401 (61%), Gaps = 12/401 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ ++G+ FR+ Q+ I+AVL GRD +MPTG GKS+CYQ+PAL GI +V+SPL
Sbjct: 10 KILKQYYGYDHFREGQIPVIKAVLGGRDVLGIMPTGAGKSVCYQVPALMMEGITIVISPL 69
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + G+ FL+S+ T K + G+ +++YV PE T F+
Sbjct: 70 ISLMKDQVGTLNQMGVHAAFLNSSLTAGQYYKALQLAKQGR--YKIIYVAPERLETESFL 127
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
H + ++ VA+DEAHC+S WG DFRP Y K+ + LP P++ A TATA +
Sbjct: 128 DFALSEHVK--ISFVAVDEAHCVSQWGQDFRPGYLKILDFLDRLPYRPVVGAYTATATAE 185
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCA---I 262
V++D+++ L LQNP V + F+R NLF+ V+ K + D Y +L S LK G DT I
Sbjct: 186 VREDILDILKLQNPYVETTGFDRGNLFFAVK-KPV--DKYKELVSYLKEKGCDTSGDSGI 242
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R + +++ L G S YHAGL+D+ R +++I ++Q++VAT AFGMGI
Sbjct: 243 IYCLTRKSVEQVCYDLRNEGFSVTRYHAGLSDEERKENQENFIYGKRQIMVATNAFGMGI 302
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H+N+PK+ME++YQE+GRAGRD PS+ +LYY D R + + +
Sbjct: 303 DKPDVRFVIHYNMPKNMESYYQEAGRAGRDGEPSECILYYEPRDVRTNRLFIENGEENSE 362
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
TR+ ++ + QM YC S C R+ IL FGE+
Sbjct: 363 LDEETRKIVKERDLERLKQMTFYCFTSECLRQYILNYFGEK 403
>gi|429753766|ref|ZP_19286544.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
gi|429171815|gb|EKY13407.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 326
str. F0382]
Length = 729
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 245/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KNDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 355 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 391
>gi|262408128|ref|ZP_06084675.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
gi|294645124|ref|ZP_06722849.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294809724|ref|ZP_06768411.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
gi|336403758|ref|ZP_08584467.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
gi|345508918|ref|ZP_08788536.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
gi|229447212|gb|EEO53003.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. D1]
gi|262353680|gb|EEZ02773.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_22]
gi|292639548|gb|EFF57841.1| ATP-dependent DNA helicase RecQ [Bacteroides ovatus SD CC 2a]
gi|294443058|gb|EFG11838.1| ATP-dependent DNA helicase RecQ [Bacteroides xylanisolvens SD CC
1b]
gi|335945112|gb|EGN06928.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 1_1_30]
Length = 726
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 169/402 (42%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG +F+ Q I +L G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTDELKKCFGFNKFKGNQEAIIYNLLDGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGVA-HFINSSLNKGAIDQVRSDILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLRSVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPLIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ D+ ++L + + V KSSFNRPNL+YEVR K D D+ +K N +
Sbjct: 180 TATPKVQHDIQKNLGMVDAQVFKSSFNRPNLYYEVRAKTANIDR--DIIKFIKNNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI+ YHAG++ AR+ DD++ + V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGINARPYHAGMDSLARTKNQDDFLMEKVDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCITFYTNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVAEQEIGKQL--LLETAAYAESSVCRRKTLLHYFGEE 389
>gi|67468457|ref|XP_650264.1| recQ family helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466865|gb|EAL44882.1| recQ family helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449710010|gb|EMD49159.1| recQ family helicase [Entamoeba histolytica KU27]
Length = 774
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 173/414 (41%), Positives = 244/414 (58%), Gaps = 20/414 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
H KE + ++L F H R Q I A+L+G + LMPTGGGKS+CYQ+P+L K G
Sbjct: 367 FHWKERVKEVLHKVFHHETLRLLQYPVINAILAGHNVLALMPTGGGKSLCYQLPSLFKDG 426
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
LVVSPLI+LM++QV L + GI +S + I D+++ K ++++YV PE
Sbjct: 427 YTLVVSPLISLMQDQVKALNDLGIPAITCNSNNPENIDIFI-NDIETRK--IKIVYVAPE 483
Query: 140 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
L + M++ +KK++ RGL + + IDEAHCIS WGHDFR SY +L R P V +
Sbjct: 484 LLSCSWKMNEAMKKLYDRGLFSYLVIDEAHCISQWGHDFRQSYVELREFRKTFPSVQTIL 543
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA +V+ D++ S+ L+ +V +FNRPNL YE R K D+ ++ + +
Sbjct: 544 FTATATERVKNDILLSMGLEEAIVFNQTFNRPNLRYETRVKS--PKVEVDIAHYIQQHPN 601
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IV+CL + C+ LS +L GI YHAGL+ K R V +DW++ VV ATVAF
Sbjct: 602 QCGIVFCLSKKDCESLSKFLINYGIRATHYHAGLDAKRRKKVQNDWMNGTFLVVCATVAF 661
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +P S+E ++QESGRAGRD PS ++Y+ M D R+E+ L ++
Sbjct: 662 GMGIDKPDVRFVIHQTMPSSIEQYFQESGRAGRDGKPSDCIIYFSMKDIARVEW-LKRDM 720
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKIL----ESFGEQ-VLGC 427
KN + S ++ + MV+ C S CRRK L ESF E+ GC
Sbjct: 721 GKNELTASQQQ--------SINAMVNLCITSECRRKIQLMYFDESFNEEKCTGC 766
>gi|50123092|ref|YP_052259.1| ATP-dependent DNA helicase RecQ [Pectobacterium atrosepticum
SCRI1043]
gi|49613618|emb|CAG77069.1| ATP-dependent DNA helicase [Pectobacterium atrosepticum SCRI1043]
Length = 608
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 172/403 (42%), Positives = 252/403 (62%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQFEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTESFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++A
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQAQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++SA L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|407928616|gb|EKG21469.1| Helicase [Macrophomina phaseolina MS6]
Length = 492
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/439 (41%), Positives = 250/439 (56%), Gaps = 34/439 (7%)
Query: 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA 74
+K++P+ + + +K + FG FR Q + I A L D F T GKS+CYQ+PA
Sbjct: 10 RKSQPMIDIDFTLKRI---FGKKTFRPLQREVINAALDKHDIFLQAATSFGKSLCYQLPA 66
Query: 75 LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
+ G+ +V+SPL+ALM NQV L+ I ++ST KT I EDL G P RLL
Sbjct: 67 VIDHGLTVVISPLLALMNNQVAALRAADIKVATINSTTPYSQKTAIMEDLQCGHPRTRLL 126
Query: 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
Y+TPE F L+ IH+ L +AIDEAHCIS WGHDFRPS++ LS ++ PDV
Sbjct: 127 YITPEYCQLDSFRRILRIIHTHRELARIAIDEAHCISEWGHDFRPSFKNLSFFKHEFPDV 186
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYEVRYKDLLDDAYAD--- 248
PI+ LTATA +V+ D++ +L L +P LK S +RPNL YEVR+K +D Y D
Sbjct: 187 PIICLTATATAQVRDDIVRTLAL-DPATLKLYTMSTSRPNLHYEVRFKSDEEDHYDDFVR 245
Query: 249 -LCSV-------------LKANGDT----CAIVYCLERTTCDELSAYLSAGGISCAAYHA 290
LC+V L+A+G IVY L R +C+ L+ L A GI YHA
Sbjct: 246 WLCAVQARRTADPERASALRASGKRPEALSGIVYTLFRRSCEGLAERLRASGIGARPYHA 305
Query: 291 GLNDKARSSVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGR 348
GL++ + + L W+++ ++VVAT AFGMGID++DVR V H+ +PKS E FYQE+GR
Sbjct: 306 GLSNAEKDAALSGWVANAPGYEIVVATTAFGMGIDKEDVRFVVHWELPKSFEGFYQEAGR 365
Query: 349 AGRDQLPSKSLLYYGMDDRRRMEFILSKN---QSKNSQSFSTRERSSKKSISDFSQMVDY 405
AGRD + +LYY +DR R +++++ + S + ++VDY
Sbjct: 366 AGRDGKAAACILYYSREDRDRAAGMMARDMPSECAGGGGVSAAMEKHRSRAESLKKLVDY 425
Query: 406 CEGS-GCRRKKILESFGEQ 423
CE + CR K I E FGE
Sbjct: 426 CEETRRCRHKMIAEYFGEN 444
>gi|403216335|emb|CCK70832.1| hypothetical protein KNAG_0F01640 [Kazachstania naganishii CBS 8797]
Length = 1373
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 159/391 (40%), Positives = 240/391 (61%), Gaps = 18/391 (4%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR Q +AI A L G+D F LMPTGGGKS+CYQ+PA+ + G +V+SPLI+LM++Q
Sbjct: 622 FRSNQEEAINATLEGKDVFVLMPTGGGKSLCYQLPAVVRSGKTRGTTIVISPLISLMQDQ 681
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L + I SS T + + + + G L L+Y++PE+ +A+ ++K+
Sbjct: 682 VEHLLARNIKACMFSSRGTAEERRQTFNLFIHG--LLDLIYISPEMISASEQCKKAIRKL 739
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H G L V IDEAHC+S+WGHDFRP Y++L + PD+P++ALTATA+ +V+ D++
Sbjct: 740 HEDGNLARVVIDEAHCVSNWGHDFRPDYKELKIFKREFPDIPMMALTATASEQVRMDIIH 799
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCD 272
+L L+NP+ LK SFNR NLFYEV+ K + ++C +K + I+YC + +C+
Sbjct: 800 NLELKNPVFLKQSFNRTNLFYEVKKKS--KNTIYEICDEIKRKFRNQTGIIYCHSKNSCE 857
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+ + L I CA YHAGL + R + W + QV+ ATVAFGMGID+ DVR V H
Sbjct: 858 QTATQLQRNRIKCAYYHAGLEPEERFKIQKSWQTDEIQVICATVAFGMGIDKPDVRFVYH 917
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
F IP+++E +YQE+GRAGRD S Y+ D R M+ ++ K+++ + + +
Sbjct: 918 FTIPRTLEGYYQETGRAGRDGKYSYCTTYFSFRDIRNMQTMIQKDENLDRE-------NK 970
Query: 393 KKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+K ++ Q++ YC+ + CRRK +L F E
Sbjct: 971 EKHLAKLQQVLGYCDNMTDCRRKLVLSYFNE 1001
>gi|357060591|ref|ZP_09121359.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355375896|gb|EHG23164.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 608
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 243/398 (61%), Gaps = 19/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++ L+ +FG+ FR KQ + I VL GRDCF LMPTGGGKS+CYQIPA PG+ +VVSP
Sbjct: 4 LQALKKYFGYNSFRPKQAEIIDTVLGGRDCFVLMPTGGGKSVCYQIPAALLPGLTIVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L E GI ++S+ ++ ++ E +G + +L+Y++PE
Sbjct: 64 LISLMKDQVESLLEAGIPACAINSSLPLEQSVQLQEACVNG--AYKLVYLSPE-----AL 116
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L SR ++LVAIDEAHCIS WGHDFRP Y +L +R LP+VP++ALTATA
Sbjct: 117 LASLHGWISRAKISLVAIDEAHCISQWGHDFRPEYTQLGEIRRDLPNVPMMALTATADKV 176
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D+++ L L NP + SSF+RPNL V + + L+ I+YC+
Sbjct: 177 TREDILQQLGLHNPYISVSSFDRPNLSLTVIRGFNGSEKLKAILRFLRERPGQAGIIYCM 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T + ++ L+A G+ +YHAGL+ R +I+ Q++VATVAFGMGID+ +
Sbjct: 237 SRKTTESVAEKLTAKGVRALSYHAGLSADVRDKTQTAFINDDVQIIVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PKS+E++YQE GRAGRD P+ +LL+Y D ++E + +N
Sbjct: 297 VRWVVHYNLPKSIESYYQEIGRAGRDGDPADTLLFYNYADIIQLERFAQDSGQQNI---- 352
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++ ++M +Y E S CRR+ +L FGE+
Sbjct: 353 --------NMERLNRMREYAEASVCRRRILLNYFGEET 382
>gi|313201320|ref|YP_004039978.1| ATP-dependent DNA helicase recq [Methylovorus sp. MP688]
gi|312440636|gb|ADQ84742.1| ATP-dependent DNA helicase RecQ [Methylovorus sp. MP688]
Length = 609
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 161/390 (41%), Positives = 235/390 (60%), Gaps = 14/390 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q D ++ + G D LMPTGGGKS+CYQIPAL +PG+ +VVSPLIALM+N
Sbjct: 14 FGYNQFRGPQQDVVEHLAQGGDALVLMPTGGGKSLCYQIPALLRPGLAIVVSPLIALMQN 73
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ FL+S+ ++ + + SG +++LYV PE F+S L ++
Sbjct: 74 QVEALQQLGVEAAFLNSSLQADAAYQLQQRILSG--DIKILYVAPERLMLGSFLSLLDEV 131
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L L AIDEAHC+S WGHDFRP YR+L+ L PDVP +ALTATA + +++E
Sbjct: 132 QAHIGLALFAIDEAHCVSQWGHDFRPEYRQLTILHERFPDVPRVALTATADAPTRAEIIE 191
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCD 272
L L++ SSF+RPN+ Y + K+ +A L L+ + + IVYCL R D
Sbjct: 192 RLNLEHARQFISSFDRPNIRYRIVLKN---NARQQLEQFLETEHPNDAGIVYCLSRRKVD 248
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
E +A+L + G + YHAGL+ R ++ ++VAT+AFGMGID+ +VR V H
Sbjct: 249 ETAAWLQSRGWNALPYHAGLDAATREKHQRQFLREEGIIMVATIAFGMGIDKPNVRFVAH 308
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
++PKSME++YQE+GRAGRD L + + + YG+ D M +L + + R++
Sbjct: 309 LDLPKSMESYYQETGRAGRDGLQANAWMAYGLGDVVSMRQMLDSGDAPEERKRVERQK-- 366
Query: 393 KKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ +CE +GCR + IL FGE
Sbjct: 367 ------LDALLGFCEATGCRHQGILRYFGE 390
>gi|373461301|ref|ZP_09553043.1| ATP-dependent DNA helicase RecQ [Prevotella maculosa OT 289]
gi|371952855|gb|EHO70688.1| ATP-dependent DNA helicase RecQ [Prevotella maculosa OT 289]
Length = 725
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 235/401 (58%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q IQ ++SG D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTRQLKHYFGFDKFKGDQEAIIQNLMSGHDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV GL E+ +L+S+ ++ +D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGLSEETGVAHYLNSSLNKAAVQQVMDDIRSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ AIDEAHCIS WGHDFRP YR + N + D P++ALTAT
Sbjct: 125 KEESIDFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNRPNL+YEVR K D+ + ++ + I
Sbjct: 181 ATDKVRSDIKKSLAIIDAKEFKSSFNRPNLYYEVRQKS--DEVDKQIIKFIRQHEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +ELS L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELSEVLKANEIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYAQKDLKKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y S CRRK +L FGE+
Sbjct: 351 EGKPVAEQDIGRQL--LQETAAYATSSVCRRKMLLHYFGEE 389
>gi|392544476|ref|ZP_10291613.1| ATP-dependent DNA helicase [Pseudoalteromonas piscicida JCM 20779]
Length = 607
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 249/410 (60%), Gaps = 33/410 (8%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+++ +++K + FG++ FRD QLD IQ+ L+G+D L+PTGGGKS+CYQ+PA+
Sbjct: 11 PINDPHSVLKDV---FGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFA 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLI+LM++QV LK +GIA E+++++ + + Y+ L G+ L+LLYV P
Sbjct: 68 GVTIVISPLISLMQDQVAQLKAQGIAAEYINNSVAWEQQKDTYDALFQGR--LKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ ++ + ++L AIDEAHC+S WGHDFRP Y +L LR + P VP++A
Sbjct: 126 EKALQRDFIDRISNCN----ISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPSVPMMA 181
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKAN 256
LTATA +KD+++ L +Q P + SF+RPN+ Y E ++K L + L LK
Sbjct: 182 LTATADLATRKDIVQQLGMQAPFIYTGSFDRPNIRYTIEEKFKPL-----SQLIRYLKEQ 236
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R D+++ L G + A YHAGL++ R V + + Q+VVATV
Sbjct: 237 KGQSGIIYCGSRKRVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATV 296
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEF 372
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++++Y+ D RR E
Sbjct: 297 AFGMGINKPNVRFVVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFED 356
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
I + + K + F M + E CRR+ +L F E
Sbjct: 357 IPDEQRRKVEE-------------QRFQAMSSFAEAQTCRRQILLNYFSE 393
>gi|255542856|ref|XP_002512491.1| DNA helicase hus2, putative [Ricinus communis]
gi|223548452|gb|EEF49943.1| DNA helicase hus2, putative [Ricinus communis]
Length = 586
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 169/378 (44%), Positives = 233/378 (61%), Gaps = 13/378 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA KPG+ +VVSPL++L+++
Sbjct: 201 FGNMSFRPLQHQACKASVAKRDCFVLMPTGGGKSLCYQLPATLKPGVTVVVSPLLSLIQD 260
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L K GI FL+S QT + ++L KPS +LLYVTPE + GF+ LK
Sbjct: 261 QIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNLGFLEILK 320
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR L L+ DVP++ALTATA V++D+
Sbjct: 321 CLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGCLKQNFRDVPLVALTATATHSVREDI 380
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTT 270
+++L + N LVL++SF+RPNL YEV K ++ + +LK + C IVYCL +
Sbjct: 381 LKALRIPNALVLETSFDRPNLKYEVIGK--TKESLKQVGQLLKDRFKNQCGIVYCLSKNE 438
Query: 271 CDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C E+S +L+ I YHAGL + R V W +V AT+AFGMGID+ DVR
Sbjct: 439 CIEVSNFLNDKCKIKTVYYHAGLATRQRVEVQRKWHMGEAHIVCATIAFGMGIDKPDVRF 498
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H + KS+E++YQESGRAGRD LP+ + Y D R+ +L Q +SF T
Sbjct: 499 VIHNTLSKSIESYYQESGRAGRDNLPAACIALYQKKDFSRVVCMLRSGQGYKRESFKT-- 556
Query: 390 RSSKKSISDFSQMVDYCE 407
+++ +M YCE
Sbjct: 557 -----AMAQAQKMQQYCE 569
>gi|343085469|ref|YP_004774764.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
gi|342354003|gb|AEL26533.1| ATP-dependent DNA helicase RecQ [Cyclobacterium marinum DSM 745]
Length = 725
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/394 (41%), Positives = 237/394 (60%), Gaps = 18/394 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG QFR Q + +L G + F +MPTG GKS+CYQ+PA++ G +V+SPLIA
Sbjct: 9 LKKIFGFNQFRGNQQLIVDNILKGNNTFVIMPTGAGKSLCYQLPAVSNKGTAIVISPLIA 68
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L GI FL+ST + ++ ++ +G +LLYV PE +
Sbjct: 69 LMKNQVDQLNSFGINAHFLNSTLSKTESNRVKGEVSAGLT--KLLYVAPESLTKEENVKF 126
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQ 208
LK ++ VAIDEAHCIS WGHDFRP YRK+ S+ + D +P++ALTATA PKVQ
Sbjct: 127 LKSAD----ISFVAIDEAHCISEWGHDFRPEYRKIKSIIAQIGDNLPVIALTATATPKVQ 182
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ +L ++ + KSSFNR NL+YEVR K + + ++ +K+ I+YCL R
Sbjct: 183 QDIQRNLQMEEADLFKSSFNRTNLYYEVRPK-VKSETKKEIIKYIKSQKGKSGIIYCLSR 241
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
E++ L GI+ A YHAGL+ R DD+++ V+VAT+AFGMGID+ DVR
Sbjct: 242 KKVTEIAELLKVNGINAAPYHAGLDGHVRVKNQDDFLNEEVDVIVATIAFGMGIDKPDVR 301
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PKS+E +YQE+GR+GRD L L++Y +D ++E K ++
Sbjct: 302 YVIHYDVPKSLEGYYQETGRSGRDGLEGHCLMFYRYEDIIKLE--------KFNKDKPVN 353
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + + + +M Y E S CRR+ +L FGE
Sbjct: 354 ERENARVL--LQEMAAYAESSVCRRRFLLHYFGE 385
>gi|409202724|ref|ZP_11230927.1| ATP-dependent DNA helicase [Pseudoalteromonas flavipulchra JG1]
Length = 607
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/410 (40%), Positives = 249/410 (60%), Gaps = 33/410 (8%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+++ +++K + FG++ FRD QLD IQ+ L+G+D L+PTGGGKS+CYQ+PA+
Sbjct: 11 PINDPHSVLKDV---FGYSTFRDGQLDIIQSSLAGQDTLVLLPTGGGKSLCYQVPAVLFA 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +V+SPLI+LM++QV LK +GIA E+++++ + + Y+ L G+ L+LLYV P
Sbjct: 68 GVTIVISPLISLMQDQVAQLKAQGIAAEYINNSVAWEQQRDTYDALFQGR--LKLLYVAP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ ++ + ++L AIDEAHC+S WGHDFRP Y +L LR + P VP++A
Sbjct: 126 EKALQRDFIERISNCN----ISLFAIDEAHCVSHWGHDFRPHYFRLKELRQHFPSVPMMA 181
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKAN 256
LTATA +KD+++ L +Q P + SF+RPN+ Y E ++K L + L LK
Sbjct: 182 LTATADLATRKDIVQQLGMQAPFIYTGSFDRPNIRYTIEEKFKPL-----SQLIRYLKEQ 236
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R D+++ L G + A YHAGL++ R V + + Q+VVATV
Sbjct: 237 KGQSGIIYCGSRKRVDDIAEKLIDAGFNAAGYHAGLDNDQRQFVQNRFARDDIQIVVATV 296
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEF 372
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++++Y+ D RR E
Sbjct: 297 AFGMGINKPNVRFVVHYDIPKSVEAYYQETGRAGRDSLAAEAVMYFDPADIPRVRRFFED 356
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
I + + K + F M + E CRR+ +L F E
Sbjct: 357 IPDEQRRKVEE-------------QRFQAMSSFAEAQTCRRQILLNYFSE 393
>gi|213962479|ref|ZP_03390741.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
gi|213954805|gb|EEB66125.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sputigena Capno]
Length = 727
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 245/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 3 KNDLHNALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 62
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 63 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISAGKT--KLLYVA 118
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 119 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPI 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 175 VALTATATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 233 SKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 293 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 352
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 353 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 389
>gi|325093139|gb|EGC46449.1| RecQ family helicase MusN [Ajellomyces capsulatus H88]
Length = 1559
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 237/396 (59%), Gaps = 20/396 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K +IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNG-QAGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQKSRQR 1045
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ +V +CE S CRR +IL F E+
Sbjct: 1046 QM--------LRHVVQFCENRSDCRRVQILAYFNEK 1073
>gi|242013217|ref|XP_002427311.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
gi|212511652|gb|EEB14573.1| blooms syndrome DNA helicase, putative [Pediculus humanus corporis]
Length = 1152
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 244/404 (60%), Gaps = 12/404 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L+K+ FG FR QL + A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V
Sbjct: 393 QDLIKMFHLKFGLKSFRTNQLQVMNAALLGHDCFVLMPTGGGKSLCYQLPAIVSQGVTVV 452
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPL +L+ +QV L I LS IY L+ +P ++LLYVTPE + A
Sbjct: 453 ISPLRSLILDQVTKLVTLDIKACHLSGDVKESEVVDIYRKLNMPEPEIKLLYVTPEKVGA 512
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ + ++++R +L IDEAHC+S WGHDFRP Y+KL LR P+V I+ALTAT
Sbjct: 513 STSLRNIFSRLYNRNMLARFVIDEAHCVSQWGHDFRPDYKKLRELRENYPNVNIMALTAT 572
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTC 260
A P+V+ D++ L +++P SSFNR NL Y V+ K D+ ++++ + DT
Sbjct: 573 ATPRVRIDILHQLKVKSPKWFLSSFNRSNLCYAVKEKKG-KSTLKDIAALIQQEFSRDT- 630
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC R C++++ L GI YHAGLND R+ + W++ + +VV AT+AFGM
Sbjct: 631 GIIYCFSRKECEDVARDLKVHGIGAIPYHAGLNDTERTKAQNLWMNGKVKVVCATIAFGM 690
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQESGRAGRD + +LYY D+ RM +++ +QS
Sbjct: 691 GIDKLDVRYVFHYSLPKSIEGYYQESGRAGRDGEKATCILYYSYRDKHRMLKLINMDQSM 750
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
++ + + K I + ++V + E + CRR L FGE+
Sbjct: 751 SNMA------AKKVHIDNLYRVVAFAENVTDCRRSLQLNYFGEK 788
>gi|240275770|gb|EER39283.1| RecQ family helicase MusN [Ajellomyces capsulatus H143]
Length = 1559
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 237/396 (59%), Gaps = 20/396 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K +IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNG-QAGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQKSRQR 1045
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ +V +CE S CRR +IL F E+
Sbjct: 1046 QM--------LRHVVQFCENRSDCRRVQILAYFNEK 1073
>gi|288575145|ref|ZP_06393502.1| ATP-dependent DNA helicase RecQ [Dethiosulfovibrio peptidovorans
DSM 11002]
gi|288570886|gb|EFC92443.1| ATP-dependent DNA helicase RecQ [Dethiosulfovibrio peptidovorans
DSM 11002]
Length = 603
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 235/394 (59%), Gaps = 16/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ FG+ +FR Q DAI V+ G DC LMPTGGGKS+CYQIPA+ +PGI +V+SPLI
Sbjct: 8 LLKRLFGYDEFRLNQGDAIDHVMGGGDCLVLMPTGGGKSLCYQIPAILRPGIGVVISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV GL + G+ +++ST + ++ G+ L LLYV PE P FM
Sbjct: 68 ALMHDQVNGLVQSGVRAAYMNSTMNYEEFVQVSRAAMRGE--LDLLYVAPERAMKPSFMD 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +I L+++AIDEAHC+S WGHDFRP Y +L L P+VP +A+TATA +
Sbjct: 126 FLSRIS----LSVIAIDEAHCVSQWGHDFRPEYLRLGELGRAFPEVPRIAVTATADELTR 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
K+++ L L V S F+RPN+ Y+V K+ D + +++ + IVYC+ R
Sbjct: 182 KEILSRLDLNGGKVFVSGFDRPNIRYQVVMKEKPKKQLLDF--LRRSHRNDSGIVYCMTR 239
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++ +L GI +YH G+ + R +V + + VVVAT+AFGMGID+ DVR
Sbjct: 240 RKTESIAQWLRDNGIKALSYHGGMGAEERRTVQERFQDEEAVVVVATIAFGMGIDKPDVR 299
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+ A+YQE+GRAGRD LP+ + + YGM D Q K +
Sbjct: 300 FVAHLDMPKSLAAYYQETGRAGRDGLPADAWMTYGMAD--------VTGQLKLIEMSEGD 351
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + S + M+ YCE +GCRR+ +L FG+
Sbjct: 352 ERYKRISRQNLEIMLGYCETTGCRRRSLLSFFGD 385
>gi|322699139|gb|EFY90903.1| QDE3 protein [Metarhizium acridum CQMa 102]
Length = 1698
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 240/404 (59%), Gaps = 17/404 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
K+L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ + G + +V
Sbjct: 827 KMLKDRFRMKGFRQNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVRTGKTRGVTIV 886
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K +I + P + LLYVTPE+
Sbjct: 887 VSPLLSLMQDQVDHMKALGIQAVAFNGGCSAEYKRQIMSAFNERSPEHFIELLYVTPEMV 946
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ P F + ++ ++ RG + IDEAHC+S WGHDFRP Y+ L +R P+VPI+ALT
Sbjct: 947 SMNPAFNNAMQTLYQRGKFARLVIDEAHCVSQWGHDFRPDYKSLGQVRMKFPEVPIMALT 1006
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N V SFNRPNL+YEVR K +A + S++ A +
Sbjct: 1007 ATATQNVIVDIKHNLNMANCQVFSQSFNRPNLYYEVRTKTSNSNATESIASLINAKYRNI 1066
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R +E++ L+ GI+ YHA ++ + + V W +VVVAT+AFG
Sbjct: 1067 TGIVYTISRKQAEEVARKLAGHGIAARHYHAAIDPQEKVEVQTSWQKGDIKVVVATIAFG 1126
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ +VR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1127 MGIDKPNVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKADIRVLKKLITDGDG 1186
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N Q ++ + +++ +C+ S CRR ++L FGE
Sbjct: 1187 NNEQ--------KERQMVMLNRVTAFCDNKSDCRRTEVLRYFGE 1222
>gi|154248226|ref|YP_001419184.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
gi|154162311|gb|ABS69527.1| ATP-dependent DNA helicase RecQ [Xanthobacter autotrophicus Py2]
Length = 607
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 242/399 (60%), Gaps = 19/399 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ FR Q + ++ V +G D LMPTGGGKS+CYQ+PAL +PG +VVSP
Sbjct: 13 LRVLRHVFGYEAFRGHQKEIVEHVAAGGDALVLMPTGGGKSLCYQVPALVRPGTAIVVSP 72
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM +QV L++ G+ L+S+ ++ L G L LLYV PE T F
Sbjct: 73 LIALMHDQVQALRQLGVKAAMLNSSLAPGEARQVERALAMG--DLDLLYVAPERLLTDSF 130
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L ++L AIDEAHC+S WGHDFRP YR+L+ L P VP LALTATA
Sbjct: 131 LTLLDGAR----ISLFAIDEAHCVSQWGHDFRPEYRQLTILHERFPGVPRLALTATADGP 186
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++++ME L L+ V SSF+RPN+ Y + K + A L + L A+ D IVYC+
Sbjct: 187 TRREIMERLALEEGRVFLSSFDRPNIRYRIEPKA---NPRAQLRAFLDAHADEAGIVYCM 243
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R + + LS G + YHAGL+ R+ D ++ V+VATVAFGMGID+ D
Sbjct: 244 SRAKVEATAEILSTEGRTALPYHAGLDADTRARHQDRFLKEEGVVMVATVAFGMGIDKPD 303
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSKNQSKNSQSF 385
VR V H ++PKS+EA+YQE+GRAGRD LPS++LL YG++D ++ +F+ ++S S
Sbjct: 304 VRFVVHLDLPKSIEAYYQETGRAGRDGLPSEALLLYGVEDVAKLIQFV------ESSDSP 357
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
R+R + + ++ CE + CRR+ +L+ F E +
Sbjct: 358 EARKRVERGKL---DALLGLCETASCRRQVLLKYFEEDL 393
>gi|225563190|gb|EEH11469.1| RecQ family helicase MusN [Ajellomyces capsulatus G186AR]
Length = 1559
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 237/396 (59%), Gaps = 20/396 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K +IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKEIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRRKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNG-QAGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQKSRQR 1045
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ +V +CE S CRR +IL F E+
Sbjct: 1046 QM--------LRHVVQFCENRSDCRRVQILAYFNEK 1073
>gi|393784306|ref|ZP_10372471.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
gi|392666082|gb|EIY59599.1| ATP-dependent DNA helicase RecQ [Bacteroides salyersiae CL02T12C01]
Length = 601
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/400 (41%), Positives = 240/400 (60%), Gaps = 21/400 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+++ L+ +FG+ FR Q + IQ +L +D LMPTGGGKS+CYQ+PAL G +VVS
Sbjct: 1 MIQTLKTYFGYESFRPLQEEIIQNLLDRKDSLVLMPTGGGKSICYQLPALLCEGTAVVVS 60
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PLI+LM++QV L+ GIA L+S+ + GK L+LLY++PE L
Sbjct: 61 PLISLMKDQVETLRANGIAAGALNSSNDETENANLRRACIEGK--LKLLYISPEKLITEI 118
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
++ L+ +H L+L AIDEAHCIS WGHDFRP Y ++ L P +PI+ALTATA
Sbjct: 119 DYL--LRDMH----LSLFAIDEAHCISQWGHDFRPEYAQMGILHQVFPHIPIIALTATAD 172
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D++ L L +P V SSF+RPNL V+ + + + + C I+Y
Sbjct: 173 KITREDIIRQLHLTDPKVFISSFDRPNLSLAVKRGYQQKEKSRTILEFIDRHAGECGIIY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C+ R+ + ++ L GI C YHAGL+ + R + DD+I+ R QVV AT+AFGMGID+
Sbjct: 233 CMSRSKTETVAQMLQKHGIRCGVYHAGLSTQQRDATQDDFINDRIQVVCATIAFGMGIDK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V H+N+PKS+E+FYQE GRAGRD +PS +LL+Y + D +L+K
Sbjct: 293 SNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTLLFYSLGDL----ILLTK-------- 340
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
F+T ++ +M Y E + CRR+ +L FGE+V
Sbjct: 341 FATESNQQSINLEKLQRMQQYAEANICRRRILLSYFGEKV 380
>gi|255531959|ref|YP_003092331.1| ATP-dependent DNA helicase RecQ [Pedobacter heparinus DSM 2366]
gi|255344943|gb|ACU04269.1| ATP-dependent DNA helicase RecQ [Pedobacter heparinus DSM 2366]
Length = 729
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 173/411 (42%), Positives = 244/411 (59%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L L+ FG F+ Q I VL ++ F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 KKSLFDNLQTFFGFDNFKGDQESIITNVLEKKNTFVIMPTGGGKSICYQLPALINEGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G + FL+S+ T++ DL +G+ +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLNKTEITQVKSDLLNGQT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILA 198
+ + LK I ++ VA+DEAHCIS WGHDFRP YRK+ + + L + +PI+A
Sbjct: 122 SLSKQDNIDFLKLIK----ISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGEGIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D++++L + + + KSSFNRPNLFYE+R K D ++ +K N
Sbjct: 178 LTATATPKVQQDIIKNLGMSDATLFKSSFNRPNLFYEIRPKR---DVLKEIIRYIKYNTG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GI YHAGL K R+ D ++ +V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEVAESLNLNGIKALPYHAGLEPKVRAETQDKFLMEDVEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYAESGVCRRKQILHYFGENFNETGC 395
>gi|50292717|ref|XP_448791.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528104|emb|CAG61761.1| unnamed protein product [Candida glabrata]
Length = 1371
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 162/405 (40%), Positives = 245/405 (60%), Gaps = 18/405 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIV 81
+ K L+ F FR Q +AI A LSG+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 615 VYKKLKTVFNLTSFRSNQEEAINATLSGKDVFVLMPTGGGKSLCYQLPAIVKGGCTKGTT 674
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL- 140
+V+SPLI+LM++QV L++ + LSS + K + +G L L+Y++PE+
Sbjct: 675 IVISPLISLMQDQVEHLQKLNVKARMLSSKGGIDEKNHTFNLFING--FLDLIYLSPEMI 732
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ + + ++K++ L + +DEAHC+S+WGHDFRP Y++LS + PD+P++ALT
Sbjct: 733 SVSEKCKTAIEKLYQNKQLARIVVDEAHCVSNWGHDFRPDYKQLSYFKVQYPDIPMMALT 792
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA+ +VQ D++ +L L++ L L+ SFNR NL+YEVR K + ++C +K +
Sbjct: 793 ATASEQVQMDIVFNLKLKDNLFLRQSFNRTNLYYEVRKK--TKNTIFEICDTIKQQFRNQ 850
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC + +C++ + + GI CA YHAG+ R V +W + QV+ ATVAFG
Sbjct: 851 TGIIYCHSKNSCEQTAQQMQRNGIKCAYYHAGMEADERLQVQREWQNDNLQVICATVAFG 910
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V HF +P+++E +YQE+GRAGRD S + YY D R M+ ++ K+
Sbjct: 911 MGIDKADVRFVFHFTVPRTLEGYYQETGRAGRDGNYSYCITYYSFRDVRTMQTMIQKD-- 968
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
KN + +K + Q+ YCE + CRRK +L F E+
Sbjct: 969 KNLDGI-----NKQKHLDKLQQVTAYCENDTDCRRKLVLSYFSEE 1008
>gi|389775051|ref|ZP_10193137.1| ATP-dependent DNA helicase RecQ [Rhodanobacter spathiphylli B39]
gi|388437716|gb|EIL94498.1| ATP-dependent DNA helicase RecQ [Rhodanobacter spathiphylli B39]
Length = 608
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 163/393 (41%), Positives = 239/393 (60%), Gaps = 17/393 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR +Q ++ + G D LMPTGGGKS+CYQIPAL + G +VVSPLIALM++
Sbjct: 12 FGYPSFRGQQQAVVEHLGEGGDALVLMPTGGGKSLCYQIPALLRQGTGIVVSPLIALMQD 71
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+E G+A FL+S+ + ++ L +G+ L LLYV PE T F+ L++
Sbjct: 72 QVDALREAGVAAAFLNSSLAGDQQREVERQLLAGE--LNLLYVAPERLLTSRFLDLLERT 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP YR+L+ L P+VP +ALTATA P+ +++++E
Sbjct: 130 E----VALFAIDEAHCVSQWGHDFRPEYRELAILHQRFPEVPRIALTATADPRTREEIVE 185
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L LQ+ SSF+RPN+ Y V + +A L L + IVYCL R D+
Sbjct: 186 RLSLQDARQFVSSFDRPNIGYRVGQRH---NAKRQLGEFLLGHEGESGIVYCLSRRKVDD 242
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+A+L+ GI YHAGL+ R+ ++ V+VATVAFGMGID+ DVR V H
Sbjct: 243 TAAWLAESGIEALPYHAGLDAATRAKNQQRFLREDGVVMVATVAFGMGIDKPDVRFVAHL 302
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E +YQE+GRAGRD LP+++ + YG+ D M ++++++S + + R++
Sbjct: 303 DLPRSIEGYYQETGRAGRDGLPAEAWMIYGLSDVVTMSQMIAQSESADERKRVERQK--- 359
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
++ Y E CRR+ +L +FGE G
Sbjct: 360 -----LESLLAYAEAIDCRRQLLLGAFGESYPG 387
>gi|407035712|gb|EKE37810.1| recQ family helicase, putative [Entamoeba nuttalli P19]
Length = 774
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 172/414 (41%), Positives = 244/414 (58%), Gaps = 20/414 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
H KE + ++L F H R Q I A+L+G + LMPTGGGKS+CYQ+P+L K G
Sbjct: 367 FHWKERVKEVLHKVFHHETLRLLQYPVINAILAGHNVLALMPTGGGKSLCYQLPSLFKDG 426
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
LVVSPLI+LM++QV L + GI +S + I D+++ K ++++YV PE
Sbjct: 427 YTLVVSPLISLMQDQVKALNDLGIPAITCNSNNPENIDIFI-NDIETRK--IKIVYVAPE 483
Query: 140 LTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
L + M++ +KK++ RGL + + IDEAHCIS WGHDFR SY +L R P V +
Sbjct: 484 LLSCSWKMNEAMKKLYDRGLFSYLVIDEAHCISQWGHDFRQSYVELREFRKTFPSVQTIL 543
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
TATA +V+ D++ S+ L+ +V +FNRPNL YE R K D+ ++ + +
Sbjct: 544 FTATATERVKNDILLSMGLEEAIVFNQTFNRPNLRYETRVKS--PKVEVDIAHYIQQHPN 601
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IV+CL + C+ LS +L GI YHAGL+ K R V +DW++ VV ATVAF
Sbjct: 602 QCGIVFCLSKKDCESLSKFLVNYGIRATHYHAGLDAKRRKKVQNDWMNGTFLVVCATVAF 661
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +P S+E ++QE+GRAGRD PS ++Y+ M D R+E+ L ++
Sbjct: 662 GMGIDKPDVRFVIHQTMPSSIEQYFQEAGRAGRDGKPSDCIIYFNMKDISRVEW-LKRDM 720
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKIL----ESFGEQ-VLGC 427
KN + S ++ + MV+ C S CRRK L ESF E+ GC
Sbjct: 721 GKNELTSSQQQ--------SINAMVNLCITSECRRKIQLMYFDESFNEEKCTGC 766
>gi|261493662|ref|ZP_05990181.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261310662|gb|EEY11846.1| ATP-dependent helicase RecQ [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 599
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 244/399 (61%), Gaps = 22/399 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L FG+ +FRD Q + I AVL RDC +M TGGGKS+CYQ+PAL GI LV+SP
Sbjct: 6 ISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L GI +L+STQT++ + + + SG+ L+LLY++PE T GF
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQFVEQKALSGQ--LKLLYLSPEKVMTQGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ S ++ +A+DEAHC+S WGHDFRP Y L LRN P+VP++ALTATA P
Sbjct: 124 FHFI----SLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADPT 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L +P + SF+RPN+ Y V ++K L L ++ IVY
Sbjct: 180 TRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPL-----EQLIKLISKQQGKSGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R +E++ LSA IS YHAG++ + R V + + Q+VVAT+AFGMGI++
Sbjct: 235 CNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ IL + ++
Sbjct: 295 SNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRN 354
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
++ ++I DF+ E CRR +L FGE
Sbjct: 355 I---KQHKLQAIGDFA------ESQTCRRLVLLNYFGEH 384
>gi|389744568|gb|EIM85750.1| ATP-dependent DNA helicase [Stereum hirsutum FP-91666 SS1]
Length = 814
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 168/415 (40%), Positives = 251/415 (60%), Gaps = 17/415 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVS 85
+ +L+ FGH ++ KQ + +A SGRD + PTG GKS+C+Q+PALA+ G+ +VVS
Sbjct: 18 LHVLKDVFGHEDYKGKQKEIFEAAASGRDVLVVAPTGMGKSICFQVPALAQDEGLTIVVS 77
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL+AL++NQV L++ + LSS + + +I EDL SG+PS RLLY+TPE +T
Sbjct: 78 PLLALIKNQVARLRQNHVRVAALSSDVSRLEQDEIKEDLSSGEPSNRLLYITPERLSTGE 137
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
L ++ LN + +DEAHCIS WGHDFR YR+L + R P VPI+ALTA+A P
Sbjct: 138 IHRLLTVVYEANNLNRLVVDEAHCISEWGHDFRAEYRQLGAFRRKFPGVPIMALTASATP 197
Query: 206 KVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRYKD------LLDDAYADLCSV-LKANG 257
VQ D+++SL + ++ L FNR NLFYEVRY ++D ++ + S+ + N
Sbjct: 198 TVQDDIIKSLRMSEDHCKLVHPFNRSNLFYEVRYHASNDTMVQMEDVFSYISSLHRRRNR 257
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-----QVV 312
+ IVYC R TC+ELS +L G++ YH G+ A L DW+ +V
Sbjct: 258 PSSGIVYCRTRATCNELSHFLRGRGLNSKPYHKGIKPDALDKTLTDWLKGGDGEEGIDIV 317
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
AT+AFGMGID+ DVR + HF++PKS E +YQE+GRAGRD L +K +LY+ +D R++
Sbjct: 318 CATIAFGMGIDKSDVRYIIHFDLPKSFEGYYQETGRAGRDDLAAKCVLYFSREDALRVKS 377
Query: 373 ILSKNQSKNSQSFSTRER--SSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQV 424
+++K+QS + + S+++++ ++ + E CR I FGE +
Sbjct: 378 LVAKSQSVRQITAESAHAPPPSQRAVNSLGSLIKFAENVDICRHLLICRYFGEVI 432
>gi|357059803|ref|ZP_09120582.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
gi|355377445|gb|EHG24664.1| ATP-dependent DNA helicase RecQ [Alloprevotella rava F0323]
Length = 726
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 241/408 (59%), Gaps = 23/408 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ + L+ +FG F+ Q D I ++LSG+D F LMPTGGGKSMCYQ+P+L G
Sbjct: 3 ERSEIHNALKKYFGFDCFKKNQEDIILSLLSGKDVFVLMPTGGGKSMCYQLPSLLMQGTA 62
Query: 82 LVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
+V+SPLIALM+NQV ++ E G+A FL+S+ + D+ SGK +LLYV
Sbjct: 63 IVISPLIALMKNQVDAIRHICEEDGVA-HFLNSSLNKGDIDHVKLDILSGKT--KLLYVA 119
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PE A ++ K I ++ A+DEAHCIS WGHDFRP YR + + + + PI+
Sbjct: 120 PESLAKREYVEFFKTIK----ISFYAVDEAHCISEWGHDFRPEYRNIRVVIDEIERAPII 175
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA KV+ D+ +SL +Q+ KSSFNR NL+YEVR K + ++ + ++ N
Sbjct: 176 ALTATATDKVRFDIKKSLAIQDAEEFKSSFNRANLYYEVRPK--TKEINKEIVTFIRQNA 233
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL R T DEL+ L A I YHAGL RS D ++ V+VAT+A
Sbjct: 234 GKSGIIYCLSRKTVDELAKVLQANEIKAKPYHAGLEPDERSQTQDLFLMQDIDVIVATIA 293
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H++IPKS+E +YQE+GRAGRD K + +Y DD +++E + K
Sbjct: 294 FGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDDGEGKCITFYSPDDLKKLEKFMEKK 353
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
+ER + ++ Y E S CRRK +L FGE+ L
Sbjct: 354 --------GEQEREIGYLL--LAETAAYAESSICRRKLLLHYFGEEYL 391
>gi|344202287|ref|YP_004787430.1| ATP-dependent DNA helicase RecQ [Muricauda ruestringensis DSM
13258]
gi|343954209|gb|AEM70008.1| ATP-dependent DNA helicase RecQ [Muricauda ruestringensis DSM
13258]
Length = 695
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 157/398 (39%), Positives = 244/398 (61%), Gaps = 23/398 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++LL+ HFG F Q + ++L G D +MPTGGGKS+C+Q+PAL G +VVSP
Sbjct: 9 LQLLKKHFGFDTFLPNQQAIVNSILEGNDLLGIMPTGGGKSVCFQLPALLLHGTAIVVSP 68
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+ GI F +S+Q + +++I + L + + ++LLYV PE + P
Sbjct: 69 LIALMKDQVDALQANGIPATFYNSSQAAEAQSEILKKLRAQE--IKLLYVAPE--SLPHL 124
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M L + + ++L A+DEAHCIS+WGHDFRP+Y +L L+ P+VPI A TATA
Sbjct: 125 MPFLTEDN----VSLFAVDEAHCISAWGHDFRPAYTQLGKLKEVFPNVPIAAFTATADSA 180
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
Q D+++ L + N +SF+R NLF EVR + + + L+ D I+YCL
Sbjct: 181 TQDDILKQLNITNAERHIASFDRKNLFLEVRPGT---NRFTQIVRFLEQRTDQSGIIYCL 237
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++L+ L+ G AYHAG++ +AR+ V +D+++ R ++VAT+AFGMGID+ +
Sbjct: 238 SRKGTEKLAEKLNNNGFKAQAYHAGMDTEARNQVQEDFVNDRTPIIVATIAFGMGIDKSN 297
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK++E++YQE GR+GRD+LP+ +LL+Y D ++ + ++++K Q
Sbjct: 298 VRWVIHYNMPKNIESYYQEIGRSGRDRLPANTLLFYSFSDVIQLRKFIEESETKEVQ--- 354
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
++ +M + E CRR +L FGE V
Sbjct: 355 ---------LAKLERMQQFAEALSCRRIALLNYFGEHV 383
>gi|71282216|ref|YP_266851.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
gi|71147956|gb|AAZ28429.1| ATP-dependent DNA helicase RecQ [Colwellia psychrerythraea 34H]
Length = 615
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/422 (39%), Positives = 249/422 (59%), Gaps = 18/422 (4%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
M S Q++++ L+ L+ +FG+ FR+ Q I ++L G+D LM
Sbjct: 1 MNSSVANAQTSAEISTELSAENNALLLDTLKHYFGYESFREGQAKIINSLLQGQDSLVLM 60
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQ+PA+ PG+ +VVSPLIALM++QV GL +GI+ F++S+ + I
Sbjct: 61 PTGGGKSLCYQLPAVLLPGVTVVVSPLIALMKDQVDGLTRQGISAAFINSSLEQSEISDI 120
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+ L G+ ++LLYV PE F+ L ++ L+L AIDEAHCIS WGHDFRP+
Sbjct: 121 FARL--GRGEIKLLYVAPERLTNYYFLQSLNQLP----LSLFAIDEAHCISQWGHDFRPA 174
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
Y KL L+ P VP++ALTATA +KD++ L L NP + SF+RPN+ + + K
Sbjct: 175 YTKLQCLKQNFPTVPVMALTATADVTTRKDILNQLALPNPYIHLDSFDRPNIRFTLAPKY 234
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
+ L +K G+ I+YC R ++L+ YL+A GI+CAAYHAGL ++ RS V
Sbjct: 235 ---NGEKQLLGYIKKKGEDSGIIYCNSRWQVEKLAKYLAASGINCAAYHAGLENEIRSLV 291
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
+ + Q+V+ATVAFG+GI++ +VR V HF P+++E++YQE GRAGRD L +++L
Sbjct: 292 QEGFTKDNIQIVIATVAFGLGINKPNVRYVIHFEPPRTLESYYQEIGRAGRDGLNAEALF 351
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
D R++ +S + N Q + + F+ M + + CRR+ +L F
Sbjct: 352 LVDDKDVARIKKRIS--EGDNPQRVNVE-------MQRFAAMDAFIDAQTCRRQVVLNYF 402
Query: 421 GE 422
E
Sbjct: 403 AE 404
>gi|421853205|ref|ZP_16285883.1| DNA helicase RecQ [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
gi|371478547|dbj|GAB31086.1| DNA helicase RecQ [Acetobacter pasteurianus subsp. pasteurianus LMG
1262 = NBRC 106471]
Length = 626
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/414 (42%), Positives = 249/414 (60%), Gaps = 20/414 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG FR Q A++ V+ GRD LMPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 30 EVLQAVFGFPGFRSLQAQAVECVMEGRDTLVLMPTGGGKSVCYQIPALCREGMGLVISPL 89
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S KI DL +G+ + LLY++PE + G +
Sbjct: 90 IALMDDQVAGLRQLGINAAALHSELEGDEAAKIRSDLANGR--IDLLYISPERLLSSGTL 147
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +I L+++AIDEAHCIS+WGH+FRP YR L++L + P VP +ALTATA +
Sbjct: 148 DRLVRIP----LSVIAIDEAHCISAWGHEFRPEYRALTALPRHFPHVPRIALTATADERT 203
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ +L + + VL SSF+RPNL V+ K L + L+ + D +IVYC
Sbjct: 204 REDILAALDMPHAEVLVSSFHRPNLNISVQPKA---SETRQLITALERHKDAASIVYCGS 260
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G AYHAGL+ + + L + S V+VAT+AFGMGIDR DV
Sbjct: 261 RARTERMAASLRERGWPALAYHAGLSPIEKRAALLRFRSGEPLVIVATIAFGMGIDRPDV 320
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS +LL YG +D R + L ++ + S+
Sbjct: 321 RAVVHLDMPASPEAYYQQIGRAGRDGLPSDTLLLYGGEDMARARYWLDQSAAPESEKRIM 380
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL---GCVASVTHRVVSF 438
R R M+ E +GCR + +L FGE++ G + H V++F
Sbjct: 381 RSR--------LEAMIALTETTGCRTRALLHCFGEELAEPCGHCDNCLHPVLTF 426
>gi|393241346|gb|EJD48868.1| ATP-dependent DNA helicase [Auricularia delicata TFB-10046 SS5]
Length = 852
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 171/418 (40%), Positives = 238/418 (56%), Gaps = 21/418 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSP 86
++L FG+ FR KQ + +QA + G D +MPTG GKS+C+QIPA+A G+ LVVSP
Sbjct: 50 RVLTKTFGYESFRGKQKEIVQAAVRGNDVLVVMPTGMGKSLCFQIPAIADTHGVSLVVSP 109
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM+NQV L++ + + + ++ +I DL SG P RLLY+TPE + P F
Sbjct: 110 LLALMKNQVKRLEQLQVPVQSWTGETPEHMRQEIIRDLQSGHPRTRLLYITPESMSRPQF 169
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
LK ++ + LN +DEAHCIS WGHDFR YRKL + R PDVPI+ALTA+A P
Sbjct: 170 RGVLKVVYQQNELNRFVVDEAHCISEWGHDFREEYRKLGNFRQMFPDVPIMALTASATPY 229
Query: 207 VQKDVMESLCLQNP--LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL--------KAN 256
V++D++ SL ++N L + FNR NLFYE+RY D A + V K
Sbjct: 230 VREDIIRSLGMENDQLLTVVHPFNRHNLFYEIRYMPSTWDQEAQMKHVQEYIQKLHDKRG 289
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK------- 309
+ ++YC +R TC+EL+A+L GI+ YH GL L W +
Sbjct: 290 CPSSGLIYCRKRDTCNELAAFLRKKGINAKPYHKGLGAATLDLTLRQWEETTDGQGAGAV 349
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
V V TVAFGMGID+ DVR V HF++PKS E +YQE+GRAGRD +K +LYY D
Sbjct: 350 DVAVCTVAFGMGIDKPDVRYVIHFDLPKSFEGYYQETGRAGRDGNSAKCILYYSRKDALS 409
Query: 370 MEFI--LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQV 424
+ + ++N+ S S ++S + ++ Y E + CR I FGE+V
Sbjct: 410 IRALQQRARNERVAKVSLEAAPESGERSAESLAALLHYAEDTSVCRHVSICRFFGEEV 467
>gi|332882718|ref|ZP_08450329.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
gi|332679220|gb|EGJ52206.1| ATP-dependent DNA helicase RecQ [Capnocytophaga sp. oral taxon 329
str. F0087]
Length = 729
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 173/408 (42%), Positives = 245/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ Q + I +V++ + F +MPTGGGKS+CYQ+PAL G +
Sbjct: 5 KNDLHDALKHYFGFEAFKGHQEEIITSVINKENTFVIMPTGGGKSLCYQLPALVLEGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ T ++ ED+ +GK +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSIAHVLNSSLTKNEIREVMEDISNGKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPI 196
PE + + LK + ++ VA+DEAHCIS WGHDFRP YR + ++ L ++PI
Sbjct: 121 PESLIKEEYANFLKTVP----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGSNIPI 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ+D++++L + V KSSFNRPNL+YEVR K + AD+ +K N
Sbjct: 177 VALTATATPKVQEDILKNLGMLEANVFKSSFNRPNLYYEVRPK--TKNVDADIIRFVKQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R ++L+ L GIS YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 TKKSGIIYCLSRKKVEDLAQTLQVNGISAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMIG 354
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 355 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 391
>gi|149057328|gb|EDM08651.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
gi|149057329|gb|EDM08652.1| Bloom syndrome homolog (human) (predicted), isoform CRA_a [Rattus
norvegicus]
Length = 999
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/356 (46%), Positives = 220/356 (61%), Gaps = 3/356 (0%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ R FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 642 HTKE-MMKIFRKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 700
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 701 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 760
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 761 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQRFPSVPVMAL 820
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A L + K +
Sbjct: 821 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVALDCLEWIRKHHPYD 880
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 881 SGIIYCLSRKECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 940
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S +L+Y D R++ ++
Sbjct: 941 GMGIDKPDVRFVVHASLPKSVEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLI 996
>gi|334131083|ref|ZP_08504849.1| ATP-dependent DNA helicase RecQ [Methyloversatilis universalis
FAM5]
gi|333443713|gb|EGK71674.1| ATP-dependent DNA helicase RecQ [Methyloversatilis universalis
FAM5]
Length = 601
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/408 (42%), Positives = 243/408 (59%), Gaps = 24/408 (5%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EA +K+L+ FGHA FR Q D +Q V SG D LMPTGGGKS+CYQ+PAL + G +V
Sbjct: 3 EAALKVLKEVFGHAGFRGAQADIVQHVASGGDALVLMPTGGGKSLCYQVPALLRSGTAVV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV + + G+ FL+ST + ++ L G +L LLYV PE T
Sbjct: 63 VSPLIALMQDQVAAMTQLGVRAAFLNSTLDLDQVREVERSLLDG--TLDLLYVAPERLNT 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P + L I L AIDEAHC++ WGHDFRP Y +LS L PDVP +ALTATA
Sbjct: 121 PRCLDLLSHIRP----ALFAIDEAHCVAQWGHDFRPEYLQLSVLHERFPDVPRIALTATA 176
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAI 262
P + ++++ L L + V SSF+RPN+ Y + K DDA L ++ + + I
Sbjct: 177 DPATRDEIIDRLALHDARVFVSSFDRPNIRYTIVDK---DDARKQLLRFIRTEHPEDAGI 233
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R DE + +L A G+ YHAG++ R++ + +VVAT+AFGMGI
Sbjct: 234 VYCLSRKKVDETAEWLVAQGLKALPYHAGMDAATRAAHQARFQREEGLIVVATIAFGMGI 293
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQS 379
D+ DVR V H ++P+S+E +YQE+GRAGRD + + + YG+ D +RR FI +QS
Sbjct: 294 DKPDVRFVAHLDLPRSIEGYYQETGRAGRDGGAADAWMAYGLADVVQQRR--FI---DQS 348
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ S++F + S S ++ CE + CRR +L FGE+ + C
Sbjct: 349 EGSEAF------RRISGSKLDALLGLCETAQCRRVHLLAYFGEEGVPC 390
>gi|87125637|ref|ZP_01081482.1| DEAD/DEAH box helicase:Helicase C-terminal domain [Synechococcus
sp. RS9917]
gi|86166937|gb|EAQ68199.1| DEAD/DEAH box helicase:Helicase C-terminal domain [Synechococcus
sp. RS9917]
Length = 499
Score = 317 bits (813), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 166/411 (40%), Positives = 242/411 (58%), Gaps = 12/411 (2%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ L+ +L+ FG +FR Q I+A+L GRD ++PTGGGKS+CYQ+PAL + G+VLV
Sbjct: 2 DPLLVMLQEQFGWDRFRSGQRPVIEALLEGRDALAVLPTGGGKSLCYQLPALVRQGLVLV 61
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL+ALME+QV L+++ IA L + + ++ DL SG +LRLLY+ PE +
Sbjct: 62 VSPLVALMEDQVRQLRQRQIAAACLHAGLAPDQRQAVFRDLASG--ALRLLYLAPERLQS 119
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
P + G L +A+DEAHCIS+WGHDFRP YR+L +R + P VP++AL+ATA
Sbjct: 120 PTIKGVIASTAQAGHLVALAVDEAHCISAWGHDFRPDYRRLGEIRAHCPGVPVVALSATA 179
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
AP+V+ D++ L LQ PLV S R NL Y +R + D D+ + LKA A++
Sbjct: 180 APQVRADILRLLALQQPLVQVGSARRDNLHYAMRRR--AKDPLPDVLAALKAT-RGAALI 236
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
Y R + ++ + L A GI YHAGL + R L ++ + V+VATVAFGMG+D
Sbjct: 237 YARTRRSVEQWAERLCAQGIEAIPYHAGLEPEVRQQALRHFLETEHPVLVATVAFGMGVD 296
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
R DV LV H N+P + E + QESGRAGRD LP++ L+ + DR + + + + ++
Sbjct: 297 RPDVGLVLHLNLPATPEGYLQESGRAGRDGLPAQCLVLFSPGDRTSLGWAMQTSWRRSGA 356
Query: 384 SF-------STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
S R +++ +M EG CR++ +L + GE L C
Sbjct: 357 VLGAASLDDSDDRRRLEQAQQKLRRMEAVAEGEQCRQQALLLAVGEVSLPC 407
>gi|367004206|ref|XP_003686836.1| hypothetical protein TPHA_0H01970 [Tetrapisispora phaffii CBS 4417]
gi|357525138|emb|CCE64402.1| hypothetical protein TPHA_0H01970 [Tetrapisispora phaffii CBS 4417]
Length = 1355
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/393 (40%), Positives = 242/393 (61%), Gaps = 20/393 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR Q DA+ A LSG+D F LMPTGGGKS+CYQ+PA+ K G +VVSPLI+LM++Q
Sbjct: 601 FRPNQEDAVNATLSGKDVFVLMPTGGGKSLCYQLPAIIKSGNTKGTTIVVSPLISLMQDQ 660
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKI 153
V L K I SS T + + + G L L+Y++PE+ +A+ + K+
Sbjct: 661 VDHLLAKNIKASMFSSKGTADQRRQTFNLFIHG--LLDLIYISPEMISASEQCKRAIAKL 718
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H G L + +DEAHC+S+WGHDFRP Y++L + P++P++ALTATA+ +V+ D++
Sbjct: 719 HEDGNLARIVVDEAHCVSNWGHDFRPDYKELKFFKGEYPNIPMMALTATASEQVRMDIIH 778
Query: 214 SLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTC 271
+L L++P+ LK SFNR NL+YE+ + K+ + + D+ + + I+YC + +C
Sbjct: 779 NLKLKDPVFLKQSFNRTNLYYEIIKKSKNTIFEMSDDIKRRFR---NQTGIIYCHSKNSC 835
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
++ SA + GI CA YHAG+ R V W + QV+ ATVAFGMGID+ DVR V
Sbjct: 836 EQTSAQMERAGIKCAYYHAGMEPDDRLKVQKAWQADEVQVICATVAFGMGIDKPDVRFVY 895
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS 391
HF +P+++E +YQE+GRAGRD S + YY D R ++ ++ K+++ + + +
Sbjct: 896 HFTVPRTLEGYYQETGRAGRDGKFSYCITYYSFKDVRTIQTMIQKDENLDRE-------N 948
Query: 392 SKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+K ++ Q++ YC+ + CRRK +L F EQ
Sbjct: 949 KEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEQ 981
>gi|149276388|ref|ZP_01882532.1| putative ATP-dependent DNA helicase [Pedobacter sp. BAL39]
gi|149232908|gb|EDM38283.1| putative ATP-dependent DNA helicase [Pedobacter sp. BAL39]
Length = 729
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 174/411 (42%), Positives = 242/411 (58%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K++L L+ FG F+ Q I VL ++ F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 KKSLFDNLQTFFGFDNFKGDQESIITNVLEKKNTFVIMPTGGGKSICYQLPALMSEGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G + FL+S+ T++ DL SG+ +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGSDSIAHFLNSSLNKAEITQVKSDLLSGQT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILA 198
+ LK I ++ VA+DEAHCIS WGHDFRP YRK+ + + L +PI+A
Sbjct: 122 SLGKQDNIEFLKLIK----ISFVAVDEAHCISEWGHDFRPEYRKIRQVISGLGVGIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ+D++++L + + + KSSFNRPNLFYE+R K D ++ +K N
Sbjct: 178 LTATATPKVQQDIIKNLQMSDATLFKSSFNRPNLFYEIRPKR---DVIKEIIRYIKYNTG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YCL R +E++ L+ GI YHAGL K R+ D ++ +V+VAT+AF
Sbjct: 235 KSGIIYCLSRKKVEEVAESLNLNGIKALPYHAGLEPKVRADTQDKFLMEDVEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRFVIHHDIPKSMEGYYQETGRAGRDGGEGVCIAFYAQKDVDKLAKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYAESGVCRRKQILHYFGENFNETGC 395
>gi|349702223|ref|ZP_08903852.1| ATP-dependent DNA helicase RecQ [Gluconacetobacter europaeus LMG
18494]
Length = 611
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 160/391 (40%), Positives = 239/391 (61%), Gaps = 17/391 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 19 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S Q ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 79 QVAALRQLGVNAGALHSEQEADDGARVRSDLMAGR--LDILYVSPERLLSPGMLERLGRL 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P+VP +ALTATA + + D+++
Sbjct: 137 ----TLSIIAIDEAHCISAWGHEFRPEYRELAALPQHFPNVPRIALTATADARTRTDILD 192
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL V+ K L +L + +IVYC R+ +
Sbjct: 193 ALAMPDATVLKASFHRPNLDIAVKPK---TSELRQLTGILDRHRGAASIVYCGSRSKTER 249
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ G +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 250 IARSLAGKGYVALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 309
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P S E +YQ+ GRAGRD ++++L YG DD R + L ++ + +Q R
Sbjct: 310 DMPSSPEGYYQQIGRAGRDGEQAETVLLYGGDDMARARYWLEQSNAPEAQKRIMSAR--- 366
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
M+ E +GCR + +L FGE++
Sbjct: 367 -----LEAMIALTETTGCRTQALLSCFGEEL 392
>gi|392546619|ref|ZP_10293756.1| ATP-dependent DNA helicase [Pseudoalteromonas rubra ATCC 29570]
Length = 604
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 245/409 (59%), Gaps = 22/409 (5%)
Query: 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
+N H + +L+ FG++ FRD QLD IQA L GRD L+PTGGGKS+CYQ+PAL
Sbjct: 2 ENLATHSIDTPHGVLKEVFGYSDFRDGQLDVIQACLDGRDSLVLLPTGGGKSLCYQVPAL 61
Query: 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
PG +VVSPLI+LM++QV L+ GI+ EF++++ + IY+ L G+ ++LLY
Sbjct: 62 ILPGTCVVVSPLISLMQDQVAQLQALGISAEFINNSLDRAQQQAIYQRLHQGE--IKLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE F+ +L + L L AIDEAHC+S WGHDFRP Y +L L++ VP
Sbjct: 120 VAPEKILQSEFIERLSHLQ----LGLFAIDEAHCVSHWGHDFRPHYCRLHELKHRFASVP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVL 253
++ALTATA + D++ L LQ P + SF+RPN+ Y E ++K L + L L
Sbjct: 176 MMALTATADLATRSDIVTQLGLQTPFIHTGSFDRPNIRYTIEEKFKPL-----SQLMRYL 230
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ IVYC R D+++ L G + AAYHAG++++ R V + + Q+VV
Sbjct: 231 RTQKGQSGIVYCSSRKRVDDIAEKLVEAGFNAAAYHAGMSNEQRQFVQNAFARDDIQIVV 290
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
ATVAFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++++Y+ D R++
Sbjct: 291 ATVAFGMGINKSNVRYVLHYDIPKSIEAYYQETGRAGRDGLAAEAIMYFDPADIGRVKRF 350
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ ++ R R ++ FS M + CRR+ +L F E
Sbjct: 351 FEDIEDEH------RRRVEEQR---FSSMASFASAQTCRRQILLNYFSE 390
>gi|115486841|ref|NP_001068564.1| Os11g0708600 [Oryza sativa Japonica Group]
gi|113645786|dbj|BAF28927.1| Os11g0708600, partial [Oryza sativa Japonica Group]
Length = 685
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 172/387 (44%), Positives = 234/387 (60%), Gaps = 22/387 (5%)
Query: 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106
I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++QV+GL GI
Sbjct: 17 INAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAY 76
Query: 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAID 165
L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K H G L+L+AID
Sbjct: 77 MLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAID 136
Query: 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225
EAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++E L + + S
Sbjct: 137 EAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVS 196
Query: 226 SFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281
+ NRPNLFY+V K ++ D A+ S N ++ IVYC R C++++ LS
Sbjct: 197 TINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSRKECEQVAKELSER 255
Query: 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341
GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR V H ++ KSME
Sbjct: 256 GILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMET 315
Query: 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQ 401
+YQESGRAGRD LPS+ +LYY D R S E +++ D
Sbjct: 316 YYQESGRAGRDGLPSECILYYRPGDVPR------------QSSMVFYENCGLQNLYD--- 360
Query: 402 MVDYCEGS-GCRRKKILESFGEQVLGC 427
+V YC+ CRR FGE C
Sbjct: 361 IVRYCQSKRSCRRGAFFRHFGEAAQDC 387
>gi|95930254|ref|ZP_01312992.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
gi|95133717|gb|EAT15378.1| ATP-dependent DNA helicase RecQ [Desulfuromonas acetoxidans DSM
684]
Length = 598
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 165/395 (41%), Positives = 238/395 (60%), Gaps = 18/395 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
+ L+ FG +FR+ Q I+ +++G+DCF LMPTGGGKS+CYQIPAL + G+ +VVSPL
Sbjct: 5 QTLQNTFGFREFREPQQQIIETLIAGQDCFVLMPTGGGKSLCYQIPALHRQGVAIVVSPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G++ +S+ Q + L + L LLYV PE +P F+
Sbjct: 65 ISLMKDQVDALNANGVSAACYNSSLAAQEARDVLSQLH--RQQLDLLYVAPERLLSPDFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L I + L+A+DEAHC+S WGHDFRP Y +L LR+ PD P++ALTATA +
Sbjct: 123 ERLHDIK----IALIAVDEAHCVSQWGHDFRPEYVQLGQLRDQFPDTPMIALTATADMQT 178
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++E L L + SSF+RPN+ Y V K L L + + IVY L
Sbjct: 179 RQDIVERLRLHHARKFISSFDRPNIRYTVVDKQ---KPIVQLEQFLDQHRNEAGIVYALS 235
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E++A L GI AAYHAGL D+ R V + ++ QVVVATVAFGMGID+ +V
Sbjct: 236 RKRVEEIAAKLVDRGIVAAAYHAGLPDRQRHEVQEAFLRDDIQVVVATVAFGMGIDKSNV 295
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H+++PK++E++YQE+GRAGRD LP+++LL +G D ++ K + +
Sbjct: 296 RFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGDIAIARGLIEKGGNPD------ 349
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + + MV Y E CRR+ +L FGE
Sbjct: 350 ---QVRIELHKLNAMVSYAEPLTCRRRALLGYFGE 381
>gi|198276172|ref|ZP_03208703.1| hypothetical protein BACPLE_02361 [Bacteroides plebeius DSM 17135]
gi|198270984|gb|EDY95254.1| ATP-dependent DNA helicase RecQ [Bacteroides plebeius DSM 17135]
Length = 727
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 240/402 (59%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
LV L+ +FG F+ Q I+ +LSG+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LVAALKKYFGFDTFKGNQEAIIRNLLSGKDTFVLMPTGGGKSLCYQLPSLLMDGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA F++S+ T ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNFSEEDGIA-HFINSSLTKSATDQVKADIMAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+ + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVDFLRHVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKV+ D+ ++L + + +SSFNRPNL+YEVR K D D+ +K N
Sbjct: 180 TATPKVKMDIQKNLGMMDATEFRSSFNRPNLYYEVRAKSANVDK--DIIKFIKQNEGKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI AYHAG++ R+ D ++ V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELTEILLANGIKARAYHAGMDSATRNGNQDAFLKEDIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDVPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ + + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPISEQEIGRQL--LQETAAYAESSVCRRKILLHYFGEE 389
>gi|108936937|dbj|BAE96002.1| RecQ-like helicase 2 [Oryza sativa Japonica Group]
Length = 768
Score = 317 bits (813), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 172/387 (44%), Positives = 234/387 (60%), Gaps = 22/387 (5%)
Query: 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106
I A++SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++QV+GL GI
Sbjct: 100 INAIMSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAY 159
Query: 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAID 165
L+ST +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K H G L+L+AID
Sbjct: 160 MLASTTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAID 219
Query: 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225
EAHC S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++E L + + S
Sbjct: 220 EAHCCSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVS 279
Query: 226 SFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG 281
+ NRPNLFY+V K ++ D A+ S N ++ IVYC R C++++ LS
Sbjct: 280 TINRPNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSRKECEQVAKELSER 338
Query: 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341
GI YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR V H ++ KSME
Sbjct: 339 GILADYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMET 398
Query: 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQ 401
+YQESGRAGRD LPS+ +LYY D R S E +++ D
Sbjct: 399 YYQESGRAGRDGLPSECILYYRPGDVPR------------QSSMVFYENCGLQNLYD--- 443
Query: 402 MVDYCEGS-GCRRKKILESFGEQVLGC 427
+V YC+ CRR FGE C
Sbjct: 444 IVRYCQSKRSCRRGAFFRHFGEAAQDC 470
>gi|345882276|ref|ZP_08833781.1| ATP-dependent DNA helicase RecQ [Prevotella oulorum F0390]
gi|343918032|gb|EGV28804.1| ATP-dependent DNA helicase RecQ [Prevotella oulorum F0390]
Length = 725
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 170/404 (42%), Positives = 239/404 (59%), Gaps = 27/404 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG QF+ Q IQ +++G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LAKQLKHYFGFDQFKGDQEAIIQNLMAGNDTFVLMPTGGGKSLCYQLPSLLMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LT 141
PLIALM+NQV L ++ L+S+ T K+ +D+ SG+ +LLYV PE LT
Sbjct: 67 PLIALMKNQVDVMNSLSDEPCLAHCLNSSLTKTAVQKVMDDIRSGRT--KLLYVAPESLT 124
Query: 142 --ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
T F+ +K ++ A+DEAHCIS WGHDFRP YR + + N + + P++AL
Sbjct: 125 KEETVAFLQTIK-------ISFYAVDEAHCISEWGHDFRPEYRNIRPIINRIGNAPVIAL 177
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KV+ D+ +SL + + +SSFNRPNL+YEVR K +D + ++ N
Sbjct: 178 TATATDKVRSDIKKSLGIADAKEFRSSFNRPNLYYEVRPK--TNDIDKQIIKFIRQNAGK 235
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R +EL+ L A I A YHAGL RS DD++ R V+VAT+AFG
Sbjct: 236 SGIIYCLSRKKVEELAEILRANDIKAAPYHAGLESGVRSQTQDDFLMERLDVIVATIAFG 295
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H++IPKS+E +YQE+GRAGRD + + +Y D +++E
Sbjct: 296 MGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGQCIAFYAQKDLKKLE-------- 347
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K + E+ + + + Y E S CRR+ +L FGE+
Sbjct: 348 KFMEGKPVAEQDIGRQL--LQETAAYAESSVCRRRMLLHYFGEE 389
>gi|326336566|ref|ZP_08202735.1| ATP-dependent helicase RecQ [Capnocytophaga sp. oral taxon 338 str.
F0234]
gi|325691231|gb|EGD33201.1| ATP-dependent helicase RecQ [Capnocytophaga sp. oral taxon 338 str.
F0234]
Length = 730
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 175/405 (43%), Positives = 248/405 (61%), Gaps = 28/405 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG F+ KQ + I +++ F LMPTGGGKS+CYQ+PAL K G +V+S
Sbjct: 9 LQKALKSIFGFNAFKGKQEEIITSIMDNHHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 68
Query: 86 PLIALMENQVIGLKEKGIAG-----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
PLIALM+NQV ++ GI+G L+S+ T + ED+ +G+ +LLYV PE
Sbjct: 69 PLIALMKNQVDVVR--GISGTDKIAHVLNSSLTKGEIRTVMEDIRNGET--KLLYVAPES 124
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILAL 199
+ LK I+ ++ VA+DEAHCIS WGHDFRP YR + ++ + L ++PI+AL
Sbjct: 125 LTKDEYADFLKTIN----ISFVAVDEAHCISEWGHDFRPEYRNIKAIIDRLGNNIPIIAL 180
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KVQ+D++++L + LV KSSFNRPNL+YEVR K + +D+ +K +
Sbjct: 181 TATATTKVQEDILKNLGIPEALVFKSSFNRPNLYYEVRPK--TKNINSDIIRFVKQHPGQ 238
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + +EL+ L GI+ YHAGL+ K R+ D ++ +VVVAT+AFG
Sbjct: 239 SGIIYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVEVVVATIAFG 298
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQ 378
MGID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E F++ K
Sbjct: 299 MGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVGK-- 356
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ +++ MV Y E S RRK IL FGE+
Sbjct: 357 -------PIAEQEVGQAL--LQDMVAYAETSTSRRKFILHYFGEE 392
>gi|302926382|ref|XP_003054285.1| hypothetical protein NECHADRAFT_30968 [Nectria haematococca mpVI
77-13-4]
gi|256735226|gb|EEU48572.1| hypothetical protein NECHADRAFT_30968 [Nectria haematococca mpVI
77-13-4]
Length = 1678
Score = 317 bits (813), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 161/409 (39%), Positives = 243/409 (59%), Gaps = 17/409 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 825 RMLKDRFRMKGFRHNQLEAINATLEGKDAFVLMPTGGGKSLCYQLPAVIKSGRTRGVTIV 884
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + Q K ++ D P + LLYVTPE+
Sbjct: 885 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAQYKRQVMSAFDERSPEHFIELLYVTPEMV 944
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ +HS+G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 945 SKNVAFNNGMRTLHSKGKFARLVIDEAHCVSQWGHDFRPDYKTLGQVRQRYPGVPVMALT 1004
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N SFNRPNL+YEVR K D + S++++ +
Sbjct: 1005 ATATQNVIVDIRHNLGMDNCQTFCQSFNRPNLYYEVRPKTTNDKTIEAIASLVQSKYPNQ 1064
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ LS GI+ + YHA ++ + + V + W ++VVAT+AFG
Sbjct: 1065 SGIVYTISRKNAEKVAESLSQHGIAASHYHAHVDPQEKVEVQNAWQRGEIKIVVATIAFG 1124
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1125 MGIDKPDVRFVMHHGLPKSLEGYYQETGRAGRDGKPSDCILFYGKQDIRVLKRLIADGDG 1184
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLGC 427
+ Q ++ ++ +++ +C+ S CRR +IL FGE+ G
Sbjct: 1185 SHEQ--------KERQMAMLNRVTAFCDNKSDCRRAEILRYFGEEFTGA 1225
>gi|394988714|ref|ZP_10381549.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
gi|393792093|dbj|GAB71188.1| ATP-dependent DNA helicase RecQ [Sulfuricella denitrificans skB26]
Length = 616
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 236/394 (59%), Gaps = 14/394 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG++ FRD+Q ++ V SG D LMPTGGGKS+CYQ+PAL + G+ +VVSPLIALM++
Sbjct: 14 FGYSAFRDEQQAIVEHVTSGGDALVLMPTGGGKSLCYQLPALLRHGVGIVVSPLIALMQD 73
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV LK+ G+ FL+S+ ++ L G L +LYV PE F+S L+++
Sbjct: 74 QVDALKQLGVKAAFLNSSLAADAARDVFGRLMRG--DLDILYVAPERLLMANFLSALEQV 131
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L L AIDEAHC+S WGHDFRP YR+L+ L P VP +ALTATA +++++E
Sbjct: 132 QAGPGLALFAIDEAHCVSQWGHDFRPEYRELTVLHERFPAVPRIALTATADAPTRREIVE 191
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCD 272
L L+ SSF+RPN+ Y V K +A L + L+ + + IVYCL R D
Sbjct: 192 RLALEQAHQFVSSFDRPNIRYRVALKA---NARNQLQAFLETEHANDAGIVYCLSRKKVD 248
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
E +A+L G YHAGL+ R++ ++ ++VATVAFGMGID+ +VR V H
Sbjct: 249 ETAAWLKEKGWDALPYHAGLDAATRNANQRRFLREEGVIMVATVAFGMGIDKPNVRFVAH 308
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
++PKSME +YQE+GRAGRD LP+ + + YG+ D M +LS + + R+R
Sbjct: 309 LDLPKSMEGYYQETGRAGRDGLPADAWMTYGLGDVVSMRQMLSSGDAP-----AERKRV- 362
Query: 393 KKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ +CE + CR + IL FGE+ G
Sbjct: 363 --ELQKLDALLGFCEATACRHQTILRYFGEEHPG 394
>gi|302772997|ref|XP_002969916.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
gi|300162427|gb|EFJ29040.1| hypothetical protein SELMODRAFT_10140 [Selaginella moellendorffii]
Length = 703
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 163/401 (40%), Positives = 241/401 (60%), Gaps = 10/401 (2%)
Query: 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90
R +FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PA+ PG+ LVV PL++L
Sbjct: 29 RRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICCPGVTLVVCPLVSL 88
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSK 149
+ +Q++ L + I E LSS + + +I + L+ RLLYVTPE A + +
Sbjct: 89 IMDQIMHLSQASIRAEHLSSNLEYEEQRQILQQLNFDHCEYRLLYVTPEKIARSDNLLRN 148
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ +H R LL + IDEAHC+S WGHDFRP Y+ L L+ PDVP++ALTATA +V++
Sbjct: 149 LENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFPDVPLMALTATATMRVKE 208
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLER 268
DV+++L L ++ + +FNRPNL Y V K Y ++ + +K N I+YC +
Sbjct: 209 DVVQALGLCKCIIFRQTFNRPNLRYSVVPK--TKKVYEEIDAFIKENYPHESGIIYCFSK 266
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C+ + L G YHA ++ + R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 267 MDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICATVAFGMGINKPDVR 326
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSF 385
V H +IPKS+E ++QESGRAGRD LP+ +LYY D R++ +LS+ +Q+ +S+
Sbjct: 327 FVIHHSIPKSIEGYHQESGRAGRDNLPASCILYYSYSDYVRVKHLLSQGAVDQTSTGRSW 386
Query: 386 STRERSS--KKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
+ + ++ K + + +M YCE CRR L FGE+
Sbjct: 387 NNSDTANQLKTNFDNLQRMGAYCENEVDCRRSLQLGHFGEK 427
>gi|291569161|dbj|BAI91433.1| ATP-dependent DNA helicase [Arthrospira platensis NIES-39]
Length = 739
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 15/408 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
L + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 8 LAQPQSLQQCLKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPG 67
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV LK GI FL+ST + Q + + + L GK ++LLYV P
Sbjct: 68 LTVVVSPLIALMQDQVEALKNNGIEATFLNSTVDLNQARQREFAIL-QGK--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L +I + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLGFLDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D++ + L+ P V +SF R NL+Y+V K L ++ +G
Sbjct: 185 LTATATERVRFDIIRQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLLKAIESMSG- 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 -SGIIYCSSRKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q++DY E + CR + L FGE+ G
Sbjct: 363 DVDEQRIARQQ---------LRQVIDYAESTECRHRIQLRYFGEEFPG 401
>gi|374572158|ref|ZP_09645254.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM471]
gi|374420479|gb|EHR00012.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM471]
Length = 621
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 184/430 (42%), Positives = 250/430 (58%), Gaps = 39/430 (9%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
M S S P H ++AL +LR FG FR Q + I+ V G +C LMPTGGGKS
Sbjct: 1 MSSPSTAPLPAPAHGRDAL-SVLRSVFGLPGFRGAQGEIIRHVTDGGNCLVLMPTGGGKS 59
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+CYQ+PAL + G +VVSPLIALM +QV + E G+ L+S+ T Q + I L +G
Sbjct: 60 LCYQLPALLREGCGVVVSPLIALMRDQVAAMLEAGVNAAALNSSLTPQEASDIERRLIAG 119
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
L LLYV PE TP ++ L +R + L AIDEAHC+S WGHDFRP Y LS +
Sbjct: 120 --DLDLLYVAPERLVTPRCLALL----ARAKVALFAIDEAHCVSQWGHDFRPEYVGLSII 173
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--------RYK 239
PDVP +ALTATA +K+++E L L + SSF+RPN+ YE+ + K
Sbjct: 174 AERFPDVPRIALTATADELTRKEIVERLALADSPHFVSSFDRPNIRYEIVDKRNAVSQLK 233
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
DL+ + +A GD +VYCL R +E++A L GI+ YHAGL+ RS
Sbjct: 234 DLIRERHA---------GD-AGVVYCLSRKRVEEVAAALDDAGIAALPYHAGLDSSVRSR 283
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
D +++ V+VAT+AFGMGID+ DVR V H ++PKS+EA+YQE+GRAGRD PS +
Sbjct: 284 NQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSAAW 343
Query: 360 LYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKI 416
+ YG+ D +RRM ++S S+ F + SI +V E CRR+++
Sbjct: 344 MAYGLSDIVQQRRM-----IDESSGSEEF------KRVSIGKLDALVGLAETPHCRRRRL 392
Query: 417 LESFGEQVLG 426
L FGE V+G
Sbjct: 393 LAYFGEIVMG 402
>gi|88861126|ref|ZP_01135760.1| ATP-dependent DNA helicase [Pseudoalteromonas tunicata D2]
gi|88816848|gb|EAR26669.1| ATP-dependent DNA helicase [Pseudoalteromonas tunicata D2]
Length = 605
Score = 317 bits (812), Expect = 7e-84, Method: Compositional matrix adjust.
Identities = 174/401 (43%), Positives = 244/401 (60%), Gaps = 30/401 (7%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I A G+D LMPTGGGKS+CYQIPALA PGI +VVSPL
Sbjct: 15 QVLKEVFGYDQFRTGQDLVITAATQGQDTLVLMPTGGGKSLCYQIPALALPGITIVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G++ E L+ + T + IY+DL +GK ++LLYV PE F+
Sbjct: 75 ISLMQDQVAQLKALGVSAECLNQSLTREQSMAIYQDLHAGK--IKLLYVAPERLLLADFI 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + ++L AIDEAHC+S WGHDFRP Y +L+ L+ Y P +PI+ALTATA
Sbjct: 133 ERLHHLP----VSLFAIDEAHCVSHWGHDFRPHYFQLNRLKEYFPAIPIMALTATADTAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D+++ L L +P + SF+RPN+ Y E ++K L + L LKA I+YC
Sbjct: 189 RHDIVQQLRLNSPYIYTGSFDRPNIRYTLEEKFKPL-----SQLIRYLKAQPGQSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R DE+SA L G + AAYHAGL ++ RS V + +VVATVAFGMGI++
Sbjct: 244 TSRKRVDEISAKLVEAGFNAAAYHAGLENQQRSFVQTAFAKDDIHIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD----RRRMEFILSKNQSKN 381
+VR V H++IPK++E++YQE+GRAGRD L ++++LY+ D +R E I+ + + K
Sbjct: 304 NVRFVIHYDIPKNIESYYQETGRAGRDGLAAEAILYFDPADIPRVKRFFEDIVDEQRKKV 363
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q F+ M + E CRRK +L F E
Sbjct: 364 EQ-------------QRFNAMASFAEAQTCRRKILLNYFSE 391
>gi|367009466|ref|XP_003679234.1| hypothetical protein TDEL_0A06910 [Torulaspora delbrueckii]
gi|359746891|emb|CCE90023.1| hypothetical protein TDEL_0A06910 [Torulaspora delbrueckii]
Length = 1364
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 246/400 (61%), Gaps = 18/400 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVS 85
LR F FR QL+AI A LSG+D F LMPTGGGKS+CYQ+PA+ K G +V+S
Sbjct: 601 LREIFKLPGFRPHQLEAINATLSGKDVFVLMPTGGGKSLCYQLPAVVKSGKTKGTTIVIS 660
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATP 144
PLI+LM++QV L I SS T + + + + G L L+Y++PE+ +A+
Sbjct: 661 PLISLMQDQVEHLLSNNIKASMFSSKGTAEQRRQTFNLFIHG--LLDLIYISPEMISASE 718
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ K+++ G L + +DEAHC+S+WGHDFRP Y++L + PDVP++ALTATA+
Sbjct: 719 QCKRGINKLYNDGKLARIVVDEAHCVSNWGHDFRPDYKELKYFKREYPDVPMIALTATAS 778
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIV 263
+V+ D++ +L L+ P+ LK SFNR NLFYE+ K ++ ++C +K + I+
Sbjct: 779 EQVRMDIIHNLELKEPVFLKQSFNRTNLFYEILKK--TKNSIFEICDTIKIRFRNQTGII 836
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + +C++ +A + GI CA YHAG+ R ++ W + QV+ ATVAFGMGID
Sbjct: 837 YCHSKNSCEQTAAQMQRSGIKCAFYHAGMEPDDRLTIQKAWQADEIQVICATVAFGMGID 896
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R ++ ++ K+++ + +
Sbjct: 897 KPDVRFVYHFTVPRTLEGYYQETGRAGRDGKFSYCMAYFSFRDVRTIQTMIQKDKNLDRE 956
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ +K ++ Q++ YC+ + CRRK +L F E
Sbjct: 957 -------NKEKHLNKLQQVMSYCDNETDCRRKLVLSYFNE 989
>gi|189462225|ref|ZP_03011010.1| hypothetical protein BACCOP_02908 [Bacteroides coprocola DSM 17136]
gi|189431078|gb|EDV00063.1| ATP-dependent DNA helicase RecQ [Bacteroides coprocola DSM 17136]
Length = 727
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 243/408 (59%), Gaps = 23/408 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ EK L + L+ +FG F+ Q I +L+G+D F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAEKINLAEQLKKYFGFDTFKGNQEAIISNLLAGKDTFVLMPTGGGKSLCYQLPSLLMEG 60
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+V+SPLIALM+NQV ++ E G+A F++S+ T ++ D+ +GK +LLY
Sbjct: 61 TAIVISPLIALMKNQVDAMRNFSEEDGVA-HFINSSLTKSAIDQVKSDILAGKT--KLLY 117
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
V PE + LK + ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 118 VAPESLTKEENVDFLKHVK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGKAP 173
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKV+ D+ ++L + KSSFNRPNL+YEVR K ++ D+ +K
Sbjct: 174 VIALTATATPKVKMDIQKNLGMVGATEFKSSFNRPNLYYEVRPK--TNNVDKDIIRFIKQ 231
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N + I+YCL R +EL+ L A GI YHAG++ R++ D ++ +V+VAT
Sbjct: 232 NPEKSGIIYCLSRKKVEELAEILQANGIKARPYHAGMDSATRNANQDAFLKEDIEVIVAT 291
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 292 IAFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGMCITFYSNKDLQKLE---- 347
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 348 ----KFMQGKPISEQEIGKQL--LLETAAYAESSLCRRKILLHYFGEE 389
>gi|409992245|ref|ZP_11275447.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
gi|409936909|gb|EKN78371.1| ATP-dependent DNA helicase RecQ [Arthrospira platensis str. Paraca]
Length = 739
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 163/408 (39%), Positives = 247/408 (60%), Gaps = 15/408 (3%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
L + ++L + L+ +FG+ FR Q + I+ VL RD +MPTGGGKS+C+Q+PAL KPG
Sbjct: 8 LAQPQSLQQCLKQYFGYDSFRPGQREIIEQVLQKRDVLAIMPTGGGKSLCFQLPALLKPG 67
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTP 138
+ +VVSPLIALM++QV LK GI FL+ST + Q + + + L GK ++LLYV P
Sbjct: 68 LTVVVSPLIALMQDQVEALKNNGIEATFLNSTVDLNQARQREFAIL-QGK--IKLLYVAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ L +I + ++ + IDEAHC+S WGHDFRP YR++ +R+ P VP +A
Sbjct: 125 ERLLSPQFLGFLDRIDAELGISTLVIDEAHCVSDWGHDFRPEYRQIQQVRSRYPHVPAIA 184
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA +V+ D++ + L+ P V +SF R NL+Y+V K L ++ +G
Sbjct: 185 LTATATERVRFDIIRQIVLKQPYVHVASFYRSNLYYQVIPKQPKKRFTQLLKAIESMSG- 243
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R +E++ L I YHAG+ D R +I +++VAT+AF
Sbjct: 244 -SGIIYCSSRKRVEEVALQLQHNNIPALPYHAGMADSDRLESHTRFIRDDVRIIVATIAF 302
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQESGRAGRD P++ LL++ D + +E+++ +
Sbjct: 303 GMGIDKPDVRFVIHYDLPKSLENYYQESGRAGRDGQPAQCLLFFSYGDMKTIEYLIEQKP 362
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ Q + ++ Q++DY E + CR + L FGE+ G
Sbjct: 363 DVDEQRIARQQ---------LRQVIDYAESTECRHRIQLRYFGEEFPG 401
>gi|156359349|ref|XP_001624732.1| predicted protein [Nematostella vectensis]
gi|156211530|gb|EDO32632.1| predicted protein [Nematostella vectensis]
Length = 582
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 171/390 (43%), Positives = 238/390 (61%), Gaps = 22/390 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98
FR QL+ I A +SG DC +MPTGGGKS+C+Q+PA+ G+ LVVSPL++LME+Q+ L
Sbjct: 90 FRHLQLECINATMSGVDCILIMPTGGGKSLCFQLPAVVSKGLTLVVSPLVSLMEDQLWAL 149
Query: 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKKIHSRG 157
K GI L+++ T + ++ + K L++LYVTPE A + FM+KL+K + G
Sbjct: 150 KRLGIKAALLNASSTREEVNSVHASIVDKKSDLKMLYVTPEKIAKSKRFMAKLEKSYESG 209
Query: 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL 217
LL+ + IDE HC S WGHDFRP Y+ L L+ P VPIL LTATA KV +DV + L L
Sbjct: 210 LLSRIVIDEVHCTSQWGHDFRPDYKILGILKRQYPGVPILGLTATATTKVIEDVKKILGL 269
Query: 218 Q-NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL---KANGDTCAIVYCLERTTCDE 273
N L+LK+SFNRPNLFYEV+ K + A+ L + +GD+ I+YC R ++
Sbjct: 270 HANCLLLKASFNRPNLFYEVQSKPTTNSAFMSTIHQLITKRFSGDS-GIIYCFSRKDAEQ 328
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ +S+ GI A YHA + ++RS V W +++ QVVVATVAFGMGID+ +VR V H
Sbjct: 329 VAIEMSSRGIKAACYHADMPPESRSQVHMAWTTNKLQVVVATVAFGMGIDKSNVRFVIHH 388
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
+ KSME +YQESGRAGRD+ + +++Y D R ST + +
Sbjct: 389 SFSKSMENYYQESGRAGRDEKRASCIVFYRPFDIFR---------------HSTMVFTEQ 433
Query: 394 KSISDFSQMVDYCEGSG-CRRKKILESFGE 422
+ + +V YC+ G CRR I FGE
Sbjct: 434 TGLQNLYGIVRYCQQQGVCRRTLIGRHFGE 463
>gi|431796165|ref|YP_007223069.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
gi|430786930|gb|AGA77059.1| ATP-dependent DNA helicase RecQ [Echinicola vietnamensis DSM 17526]
Length = 708
Score = 317 bits (812), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 160/396 (40%), Positives = 244/396 (61%), Gaps = 16/396 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +G+ FR +Q IQ++L +D LMPTGGGKS+CYQIPA+ G+ LV+SPL
Sbjct: 6 EVLKNFYGYDSFRGQQEAIIQSILKQQDTIVLMPTGGGKSVCYQIPAMVNDGLTLVISPL 65
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV L GI +L+S+Q+ + + E++ SGK L+LLYV PE F
Sbjct: 66 IALMKDQVDALNGMGIPAAYLNSSQSASEQRFVSEEIRSGK--LKLLYVAPERLFGGAF- 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+LVAIDEAHC+S WGHDFRP Y + LR LPDVP +ALTATA +
Sbjct: 123 -PLTETLKTSRLSLVAIDEAHCVSQWGHDFRPDYLMIGRLRQELPDVPFVALTATADKQT 181
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ + L L+ P SSF+RPN+ Y + K +++ L L+ + I+YCL
Sbjct: 182 RADIADKLGLRKPKWFISSFDRPNITYRIVPKR---NSFEKLLDFLEYHQKNSGIIYCLS 238
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++++ L A G+S YHAGL+ + R+S + +I + +++VAT+AFGMGID+ +V
Sbjct: 239 RKNVEDMAGRLQAAGLSALPYHAGLDRQTRASHQEKFIKDKVKIMVATIAFGMGIDKSNV 298
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H N+P+++E +YQE+GRAGRD LPS +LL+Y D ++ ++ + +
Sbjct: 299 RFVVHMNMPQNIEGYYQETGRAGRDGLPSDALLFYSYADVMTLQRMIDTPDNPD------ 352
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
S+ ++ +M +C+ + CRR+ +L F E+
Sbjct: 353 ---YSEVMLAKLEKMKQFCQSNTCRRRYLLGYFDEE 385
>gi|261823379|ref|YP_003261485.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|261607392|gb|ACX89878.1| ATP-dependent DNA helicase RecQ [Pectobacterium wasabiae WPP163]
gi|385873847|gb|AFI92367.1| ATP-dependent DNA helicase RecQ [Pectobacterium sp. SCC3193]
Length = 608
Score = 317 bits (812), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 251/403 (62%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++SA L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|257092149|ref|YP_003165790.1| ATP-dependent DNA helicase RecQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257044673|gb|ACV33861.1| ATP-dependent DNA helicase RecQ [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 604
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 159/400 (39%), Positives = 244/400 (61%), Gaps = 13/400 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ FR +Q + ++ G D LMPTGGGKS+CYQIPAL +PG+ +VVSPL
Sbjct: 7 EILRRVFGYPAFRGEQAAIVDQIVGGGDALVLMPTGGGKSLCYQIPALLRPGVGVVVSPL 66
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV L++ G+ +L+S+ + L +G+ L L+YV PE T F+
Sbjct: 67 IALMQDQVDALRQVGVQAAYLNSSLDFRAVVDTERRLQAGE--LDLIYVAPERLLTDRFI 124
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L+++ +R ++L AIDEAHC+S WGHDFRP Y +LS L P +P +ALTATA
Sbjct: 125 GLLEQLIARDQVSLFAIDEAHCVSQWGHDFRPEYIQLSQLHERFPGIPRIALTATADQLT 184
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+++++ L L++ + +SF+RPN+ Y + +D + L + L +G IVYCL
Sbjct: 185 RQEIVSRLSLEDARLFVASFDRPNIRYTIVERD---NPRRQLLAFLGVHGGAAGIVYCLS 241
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R DE +A+L+A G++ YHAGL R ++ V+VAT+AFGMGID+ DV
Sbjct: 242 RRKVDETAAWLNAQGVTALPYHAGLAAADRQRHQQRFLREDGVVMVATIAFGMGIDKPDV 301
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P+S+EA+YQE+GRAGRD S++ + YG++D ++ + ++S +
Sbjct: 302 RFVAHLDLPRSLEAYYQETGRAGRDGEASEAWMTYGLND-----VVIHRQMIEDSAAPVE 356
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++R ++ + M+ YCE + CRR +L FGE C
Sbjct: 357 QKRVERQKL---DSMLAYCESARCRRVVLLNYFGEATTPC 393
>gi|339327532|ref|YP_004687225.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator N-1]
gi|338167689|gb|AEI78744.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator N-1]
Length = 628
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 176/419 (42%), Positives = 245/419 (58%), Gaps = 28/419 (6%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--- 75
PL AL +L+ FG+ FR +Q + I V +G DC LMPTGGGKS+CYQIPAL
Sbjct: 11 PLSMSHALA-ILKDVFGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQ 69
Query: 76 -AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
A G+ +VVSPLIALM++QV L E G+ L+ST T + + DL +G+ + +L
Sbjct: 70 RAGDGVGIVVSPLIALMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGR--IEIL 127
Query: 135 YVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
YV PE TP F L++I + L AIDEAHC+S WGHDFRP Y +LS L P V
Sbjct: 128 YVAPERLMTPRFQDLLERIR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPYV 183
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
P +ALTATA + +++E L L N V SSF+RPN+ Y + K D+A L + +K
Sbjct: 184 PRIALTATADALTRNEIIERLALDNARVFISSFDRPNIRYRIVEK---DNARQQLLAFIK 240
Query: 255 ANGDTC------AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
A IVYCL R ++ + +LS GI+ YHAG++ + R +
Sbjct: 241 AEHTAADGTHDSGIVYCLSRKKVEDTAQWLSGQGINALGYHAGMDAQVRQHHQARFREEE 300
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
V+VAT+AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D
Sbjct: 301 GLVMVATIAFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVV 360
Query: 369 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ + ++ ++S+ ++F + S S ++ CE +GCRR +IL F E C
Sbjct: 361 QQKRMI--DESEADEAF------KRVSSSKLDALLGLCETAGCRRVRILAYFNEASEPC 411
>gi|324502420|gb|ADY41066.1| Bloom syndrome protein [Ascaris suum]
Length = 1090
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 182/408 (44%), Positives = 239/408 (58%), Gaps = 21/408 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ + +L+ FG QFR +Q AI A L G DCF LMPTG GKS+CYQ+P++ G+ +
Sbjct: 302 RDQMYDVLKKKFGFNQFRHRQKTAIIAALLGYDCFVLMPTGAGKSLCYQLPSVLSGGVTV 361
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LT 141
V+SPL +L+E+Q +K+ I L+S + +IY L P + LLYVTPE +
Sbjct: 362 VISPLKSLIEDQKTKMKQLEINCCALTSDLSQAESDRIYAALSETNPKINLLYVTPEKIA 421
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YL-PDVPILAL 199
A+ + +H RGLL IDEAHCIS WGHDFRP Y KL SLR Y+ P VPI+AL
Sbjct: 422 ASEKLNNVFASLHRRGLLTRFVIDEAHCISQWGHDFRPDYTKLHSLRKVYINPRVPIMAL 481
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKAN 256
TATA PK+ D + L + N + SSF R NL Y+V R K L A + L
Sbjct: 482 TATATPKIATDARDHLSMPNSKLFISSFVRSNLKYDVIAKRPKSL--SAVMERMKALYPG 539
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYCL R C+ +S L GIS YHAGL DK R +V WI++ V+ AT+
Sbjct: 540 --KSGIVYCLSRKECETVSKSLQNQGISADVYHAGLPDKQRQNVQAKWINNHINVICATI 597
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK-SLLYYGMDDRRRMEFILS 375
AFGMGID+ DVR V HF++PKS+E +YQE+GRAGRD L S +LLY D R + I
Sbjct: 598 AFGMGIDKPDVRFVIHFSMPKSIEGYYQETGRAGRDGLTSYCALLYCYNDSIRARKMIEG 657
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
N + +S +++ Q+V YCE S CRRK ++E FGE
Sbjct: 658 DNSTVGVRSM---------HLNNLMQVVAYCENVSVCRRKVLVEHFGE 696
>gi|374334314|ref|YP_005091001.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
gi|372984001|gb|AEY00251.1| ATP-dependent DNA helicase RecQ [Oceanimonas sp. GK1]
Length = 608
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 241/396 (60%), Gaps = 22/396 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FRD QL+ ++A ++GRD +MPTGGGKS+CYQIPAL +PG+ +VVSPLI
Sbjct: 20 VLQQVFGYQDFRDGQLEIVEAAVAGRDAMVIMPTGGGKSLCYQIPALLRPGLTVVVSPLI 79
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L G+A +++S+ + + + L G+ ++LLYV+PE FM
Sbjct: 80 SLMKDQVDTLVANGVAAAYINSSLSRDTMLRHFTALRRGE--IKLLYVSPERLLQHEFME 137
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L ++ L L AIDEAHCIS WGHDFRP Y +L L+ + P +P++ALTATA +
Sbjct: 138 RLGELE----LGLFAIDEAHCISQWGHDFRPEYAELGRLKQWFPHIPVMALTATADEATR 193
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+D++ L L PL+ +SF+RPN+ Y + ++K L L + C IVYC
Sbjct: 194 QDMLGRLNLTAPLIHIASFDRPNIRYTLVEKFKGL-----DQLVRYVAEQNGQCGIVYCS 248
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A G A+YHAGL + R SV + +I +VVATVAFGMGID+ +
Sbjct: 249 SRKRVEEVAERLLAKGHRAASYHAGLPLELRQSVQERFIRDDLDIVVATVAFGMGIDKPN 308
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H++IPK++E++YQE+GR GRD LPS++LL Y D R+ +L S N Q
Sbjct: 309 VRYVVHYDIPKNIESYYQETGRGGRDGLPSEALLLYDPGDVGRVRRLLEN--SDNEQQLQ 366
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + M + E CRR+ +L FGE
Sbjct: 367 V-------ELYKLNVMAAFAESLTCRRQVLLNYFGE 395
>gi|384487467|gb|EIE79647.1| hypothetical protein RO3G_04352 [Rhizopus delemar RA 99-880]
Length = 692
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/404 (42%), Positives = 242/404 (59%), Gaps = 38/404 (9%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLV 83
K L +F ++FR QL+AI L+G D F LMPTGGGKS+CYQ+PA+ + G+ V
Sbjct: 154 KALTQNFKLSEFRPNQLEAINTTLNGDDVFVLMPTGGGKSLCYQLPAIIQRYKTQGVTFV 213
Query: 84 VSPLIALMENQVIGL-KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
VSPL++LM++QV L K +GIA L+S+ T + K IY +L P+L+LLY+TPEL +
Sbjct: 214 VSPLLSLMQDQVEQLVKGRGIAAGMLNSSVTAEQKKWIYNNLYQDTPTLQLLYITPELMS 273
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ + + +H R L IDEAHC+S WGHDFRP Y++L SLRN P+VPI+ALTA
Sbjct: 274 KSDQLRNVMDSLHRRNKLARFVIDEAHCVSQWGHDFRPDYKQLGSLRNIYPNVPIMALTA 333
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA VQKDV+ +L K R +L AD+ +K +
Sbjct: 334 TANDAVQKDVIHNL--------KRKGKRNHL--------------ADINEFIKQHYTESG 371
Query: 262 IVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC+ R C++++ L + G+S YH + RS V +W + + +V+VAT+AFGM
Sbjct: 372 IIYCISRKDCEQVAEALRTTYGVSTKHYHGKMTSSERSEVQSEWQTGKIRVIVATIAFGM 431
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF++P S+E +YQE+GRAGRD LP+ LYY D R F++ +Q +
Sbjct: 432 GIDKPDVRYVVHFSMPSSLEGYYQETGRAGRDGLPAICRLYYSFSDMRTHNFLI--DQGE 489
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
S R+R + + M+ YC+ + CRRK+IL FGE+
Sbjct: 490 GSWQQKQRQR------DNLNTMMRYCDNKADCRRKQILSYFGER 527
>gi|156848959|ref|XP_001647360.1| hypothetical protein Kpol_1018p31 [Vanderwaltozyma polyspora DSM
70294]
gi|156118046|gb|EDO19502.1| hypothetical protein Kpol_1018p31 [Vanderwaltozyma polyspora DSM
70294]
Length = 1332
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/415 (38%), Positives = 250/415 (60%), Gaps = 22/415 (5%)
Query: 20 LHEK----EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL 75
+HEK + L+ F FR Q DA+ A L G+D F LMPTGGGKS+CYQ+PA+
Sbjct: 536 MHEKYRWTNEVNHKLKSIFKLPGFRPNQEDAVNATLDGKDVFVLMPTGGGKSLCYQLPAM 595
Query: 76 AKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
K G +V+SPLI+LM +QV LK K I + SS T + + + G L
Sbjct: 596 IKSGKTRGTTIVISPLISLMHDQVEHLKSKDIKADMFSSKGTTEQRRNTFNLFILG--LL 653
Query: 132 RLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
++Y++PE+ +A+ +KK++ L + +DEAHC+S+WGHDFRP Y++L +
Sbjct: 654 DIIYISPEMVSASEQCKKAIKKLYVDKKLARIVVDEAHCVSNWGHDFRPDYKELKFFKRE 713
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
PD+P++ALTATA +V D+ +L L++P+ LK SFNR NLFYE+R K+ ++ ++C
Sbjct: 714 YPDIPLMALTATANERVILDINHNLSLKDPVFLKQSFNRTNLFYEIRIKN--KNSIFEMC 771
Query: 251 SVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309
+ +K + I+YC + +C++ ++ + G+ C YHAG+ + R V W +
Sbjct: 772 NDIKTRFRNQTGIIYCHSKNSCEQTASLIERSGVKCTYYHAGMEPEDRMKVQQAWQEDKI 831
Query: 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369
QV+ ATVAFGMGID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R
Sbjct: 832 QVICATVAFGMGIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFKDIRS 891
Query: 370 MEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
++ ++ K+Q+ + + + +K ++ Q++ YC+ + CRRK +L F E+
Sbjct: 892 IQTMIQKDQNLDRE-------NKEKHLNKLKQVISYCDNIADCRRKLVLSYFNEK 939
>gi|430808837|ref|ZP_19435952.1| ATP-dependent DNA helicase RecQ [Cupriavidus sp. HMR-1]
gi|429498733|gb|EKZ97235.1| ATP-dependent DNA helicase RecQ [Cupriavidus sp. HMR-1]
Length = 615
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 243/411 (59%), Gaps = 27/411 (6%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVL 82
+ +L+ FG+ FR +Q + I V G DC LMPTGGGKS+CYQIPAL A G+ +
Sbjct: 5 LAILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKSLCYQIPALLRQQAGHGVGI 64
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L E G+ L+ST + + + DL +G+ L +LYV PE
Sbjct: 65 VVSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERDLLAGR--LDILYVAPERLM 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L++ + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTAT
Sbjct: 123 TPRFLDLLERTR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPRVPRIALTAT 178
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------N 256
A +++++E L L V SSF+RPN+ Y + K D+A L + +KA
Sbjct: 179 ADALTRQEIVERLALDEASVFISSFDRPNIRYRIIEK---DNARLQLLAFIKAEHMNATG 235
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G IVYCL R ++ +A+LS+ GI+ YHAG++ + R + + V+VAT+
Sbjct: 236 GHDSGIVYCLSRKKVEDTAAWLSSHGINALGYHAGMDSQVRQTHQARFREEEGIVMVATI 295
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + + ++ +
Sbjct: 296 AFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDE 355
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+++ E + S S ++ CE +GCRR +IL F E C
Sbjct: 356 SEAD--------EAHKRVSSSKLDALLGLCETAGCRRVRILAYFDETAEPC 398
>gi|363748979|ref|XP_003644707.1| hypothetical protein Ecym_2138 [Eremothecium cymbalariae DBVPG#7215]
gi|356888340|gb|AET37890.1| Hypothetical protein Ecym_2138 [Eremothecium cymbalariae DBVPG#7215]
Length = 1394
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 159/397 (40%), Positives = 249/397 (62%), Gaps = 20/397 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIA 89
F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G +VVSPLI+
Sbjct: 626 FKLPNFRPNQLEAINATLGGQDVFVLMPTGGGKSLCYQLPAIVKSGNTSGTTIVVSPLIS 685
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMS 148
LM++QV L K I SS T + + + + +G L L+Y++PE+ A+ +
Sbjct: 686 LMQDQVEHLLAKNIKASMFSSKGTAEQRRQTFNLFINGL--LDLVYISPEMICASVQCKN 743
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
++K++ L+ + +DEAHC+S+WGHDFRP Y++L + P++P++ALTATA+ +V+
Sbjct: 744 AIQKLYRDHKLSRIVVDEAHCVSNWGHDFRPDYKELKFFKEEYPNIPMMALTATASEQVR 803
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCL 266
D++ +L L+ P+ LK SFNR NL+Y+V K ++ ++C +K G T IVYC
Sbjct: 804 MDIIHNLQLRQPVFLKQSFNRTNLYYQVLRKS--KNSMDEICETIKTKFRGQT-GIVYCH 860
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
+ +C++ +A + G+ CA YHAG++ R V W S++ QV+ ATVAFGMGID+ D
Sbjct: 861 SKNSCEQTAATMVRSGVKCAYYHAGMDPDERLQVQQGWQSNKVQVICATVAFGMGIDKPD 920
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF +P+++E +YQE+GRAGRD S ++YY D R ++ ++ K+++ + +
Sbjct: 921 VRFVYHFTVPRTLEGYYQETGRAGRDGSYSHCIMYYSFRDVRTIQSMIQKDKNLDRE--- 977
Query: 387 TRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ +K ++ Q++ YCE + CRR+ +L F E
Sbjct: 978 ----NKEKHLNKLQQVMQYCENTTDCRRQLVLSYFNE 1010
>gi|359299526|ref|ZP_09185365.1| ATP-dependent DNA helicase RecQ [Haemophilus [parainfluenzae] CCUG
13788]
gi|402304439|ref|ZP_10823509.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
gi|400378027|gb|EJP30892.1| ATP-dependent DNA helicase RecQ [Haemophilus sputorum HK 2154]
Length = 601
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/389 (41%), Positives = 238/389 (61%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I AVL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEVIDAVLAGRDCLVIMTTGGGKSLCYQVPALCLEGITLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +L+STQT + + + + SG+ L+LLY++PE T GF ++
Sbjct: 75 QVDQLLTNGIEAAYLNSTQTQEEQQAVEQKALSGQ--LKLLYLSPEKVMTQGFF----RL 128
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++ +A+DEAHC+S WGHDFRP Y L +LR P++P++ALTATA P + D++
Sbjct: 129 VSYCKVSFIAVDEAHCVSQWGHDFRPEYTLLGNLRKTFPNIPLMALTATADPTTRADILH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K L + A IVYC R +E
Sbjct: 189 HLRLNDPHTYLGSFDRPNIRYTVQEKF---KPMEQLAKFINAQKGKSGIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARHISVMGYHAGMSVQQRETVQNAFQRDNVQVVVATIAFGMGINKSNVRFVVHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E++YQE+GRAGRD LPS+++++Y D ++ IL + + ++
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSEAVMFYDPADYAWLQKILLEEPESEQRDI---KQHKL 362
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
++I F+ E CRR +L FGE
Sbjct: 363 QAIGAFA------ESQTCRRLVLLNYFGE 385
>gi|292486686|ref|YP_003529556.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|292897923|ref|YP_003537292.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|428783612|ref|ZP_19001107.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
gi|291197771|emb|CBJ44866.1| ATP-dependent DNA helicase [Erwinia amylovora ATCC 49946]
gi|291552103|emb|CBA19140.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora CFBP1430]
gi|312170752|emb|CBX79014.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ATCC BAA-2158]
gi|426277898|gb|EKV55621.1| ATP-dependent DNA helicase RecQ [Erwinia amylovora ACW56400]
Length = 610
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 171/401 (42%), Positives = 239/401 (59%), Gaps = 19/401 (4%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 9 NEALADQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+A L+STQ + + + SGK +RLLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGK--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTA
Sbjct: 127 MMDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ L L +PL+ SSF+RPN+ Y + K L ++ C
Sbjct: 183 TADETTRNDIARLLQLNDPLIQISSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ + K
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCLEEKK 356
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 357 QGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|254443570|ref|ZP_05057046.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
gi|198257878|gb|EDY82186.1| ATP-dependent DNA helicase RecQ [Verrucomicrobiae bacterium DG1235]
Length = 616
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 235/394 (59%), Gaps = 21/394 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FGH FR Q + + L+GRD F L+PTGGGKS+CYQ+PA+ G+ +V+SPLIA
Sbjct: 13 LKKYFGHDTFRPLQAEIVADALAGRDVFALLPTGGGKSLCYQLPAVLSEGLTVVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL E GIA FL+S+ + + Y L +G ++LYV PE GF+
Sbjct: 73 LMKDQVDGLTENGIAATFLNSSLGKKDAAQRYAKLFAG--DYQVLYVAPERLMLGGFLED 130
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LKK + A+DEAHCIS WGHDFRP YR+L+ LR PD P +ALTATA +V+
Sbjct: 131 LKKWK----VCRFAVDEAHCISEWGHDFRPEYRQLAELRKRFPDTPFMALTATATDRVRG 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+++ L L +P +SFNRPNL Y + K + + + +K+ I+YC R
Sbjct: 187 DIVKQLQLHDPTDYVASFNRPNLAYRIEQKQAV---FRQILKFVKSRPFESGIIYCFSRK 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
++ + L G+ AYHAG+ R+ D +I +VV AT+AFGMGID+ +VR
Sbjct: 244 ATEQTADRLRQEGVEAIAYHAGMTPLQRAKNQDAFIRDEVKVVCATIAFGMGIDKPNVRY 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKNQSKNSQSFSTR 388
V H +IPK++E +YQE+GRAGRD LPS+ ++Y+ D +++ FI K +
Sbjct: 304 VIHQDIPKNIEGYYQETGRAGRDGLPSECVMYFSPGDVAKQLNFIAEK---------EPQ 354
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER K Q+V+Y E S CRR +L+ F E
Sbjct: 355 EREVAK--EQLRQIVNYAESSRCRRAVLLDYFSE 386
>gi|395330800|gb|EJF63182.1| ATP-dependent DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 805
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 174/421 (41%), Positives = 255/421 (60%), Gaps = 26/421 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVL 82
+A +L+ FGH+ FR KQ + ++A + + PTG GKS+C+Q+PA+A + G+ +
Sbjct: 2 DACSNVLKKTFGHSTFRGKQEEIVEAAI-----LVIAPTGMGKSLCFQVPAVAAQHGVTV 56
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM+NQ+ L++ GIA L+S + + +DL S +PS+RLLY++PE
Sbjct: 57 VVSPLIALMKNQISKLRDLGIAVAALTSETPSRDRAYALQDLRSDEPSIRLLYISPEKYC 116
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L ++ + LN + +DEAHCIS WGHDFR YR+L S R+ P++PI+ALTAT
Sbjct: 117 STEIRHLLNGLYEKDALNRLVVDEAHCISEWGHDFREEYRRLGSFRDKYPNIPIMALTAT 176
Query: 203 AAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRYKDLLD------DAYADLCSVLK 254
A VQ+DV+ +L + + V FNR NLFYEVRY+ + D Y + ++ +
Sbjct: 177 ATDTVQQDVIRTLKMSAKRLFVAVHPFNRANLFYEVRYQSNPNPTAHMMDVYEYIENLHR 236
Query: 255 ANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW------ISS 307
G + IVYC R CDEL+ +LS GI AYH GL++ L DW +
Sbjct: 237 RRGRASSGIVYCRTRALCDELALFLSKKGIQAKAYHRGLSNAVLDKTLKDWDAGGNGVPG 296
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
VV AT+AFGMGID+ DVR V HFN+PKS+E +YQE+GRAGRD LP+K +L+Y +D
Sbjct: 297 GVDVVCATIAFGMGIDKADVRYVLHFNLPKSIEGYYQETGRAGRDGLPAKCILFYSREDA 356
Query: 368 RRMEFILSKNQSK---NSQSFSTRERSSKKSISDFSQMVDYCEGSG-CRRKKILESFGEQ 423
R++ +S + SK ++S + E S+++ S ++D+ E CR I FGE+
Sbjct: 357 ARVKQFVSDSHSKRVVRAESGNGPE-PSQRAADSVSALLDFAENVNICRHVLICRYFGEK 415
Query: 424 V 424
+
Sbjct: 416 I 416
>gi|352106026|ref|ZP_08961137.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
gi|350598118|gb|EHA14242.1| ATP-dependent DNA helicase RecQ [Halomonas sp. HAL1]
Length = 608
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 240/401 (59%), Gaps = 17/401 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A +K+L+ FG+ FR Q I+ V++G D LMPTGGGKS+CYQIPAL + G +VV
Sbjct: 8 AALKVLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVV 67
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ G+ +L+S+ +I L +G+ L LLYV PE ATP
Sbjct: 68 SPLIALMQDQVAALEQNGVRAAYLNSSLDYHEAVEIENRLRAGE--LDLLYVAPERLATP 125
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ + + + L AIDEAHC+S WGHDFRP YR+LS L P VP +ALTATA
Sbjct: 126 ----RMQMLLEQNQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATAD 181
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIV 263
+ D+ME L LQ + S F+RPN+ Y + +A L ++ + D IV
Sbjct: 182 VPTRHDIMEHLQLQEAALYNSGFDRPNIRYHIAENQ--GNAKEQLLRFIREHHDGEAGIV 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +E +A+L G++ YHAGL + R ++ VVVAT+AFGMGID
Sbjct: 240 YCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQQHQTRFLREDGVVVVATIAFGMGID 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H N+PKS+EA+YQE+GRAGRD LP+ + + YG+ D +++ Q +
Sbjct: 300 KPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQD------VITLRQMQQGS 353
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
S + +++ ++ D M+ CE CRR+ +L FG+ +
Sbjct: 354 SAADQQKRIEQQKLD--AMLGLCEIISCRRQALLHYFGDHL 392
>gi|297849458|ref|XP_002892610.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
gi|297338452|gb|EFH68869.1| DNA helicase [Arabidopsis lyrata subsp. lyrata]
Length = 1189
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 245/401 (61%), Gaps = 15/401 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 447 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 506
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 507 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 566
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 567 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 626
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N +V + SFNRPNL+Y V + K L+D + +K N D C I+YCL R
Sbjct: 627 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLED----IDKFIKENHFDECGIIYCLSRM 682
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR
Sbjct: 683 DCEKVSERLQEFGHKTAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRF 742
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSF- 385
V H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ +QS + +
Sbjct: 743 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYN 802
Query: 386 --STRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
++ R + + + +MV YCE CRR L FGE+
Sbjct: 803 RVASLGRILETNTENLLRMVSYCENEVECRRFLQLVHFGEK 843
>gi|410086312|ref|ZP_11283024.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
gi|409767157|gb|EKN51237.1| ATP-dependent DNA helicase RecQ [Morganella morganii SC01]
Length = 608
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 240/396 (60%), Gaps = 22/396 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L FG+ QFR Q D I V GRDC +MPTGGGKS+CYQIPAL PG+ +VVSPLI
Sbjct: 16 ILHQIFGYQQFRAGQSDIIDTVTGGRDCLVVMPTGGGKSLCYQIPALMLPGLTVVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ G+ +L+S QT Q + K+ E + + ++LLYV PE F+
Sbjct: 76 SLMKDQVDQLRLLGVEAGYLNSAQTAQEQQKVLEGCHNNR--IKLLYVAPERLLMSSFIR 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L++ +L+A+DEAHCIS WGHDFRP Y + LR +LP VP++ALTATA +
Sbjct: 134 QLQQWQP----SLLAVDEAHCISQWGHDFRPEYCAIGELRQHLPGVPVIALTATADNTTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D+ L L +PL+ SSF+RPN+ Y + +YK A+ L ++ C I+YC
Sbjct: 190 SDICSRLRLSDPLIHISSFDRPNIRYTLVEKYK-----AFDQLWMFVRGQKGQCGIIYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R ++++A L G+S AAYHAGL++ R V D ++ QVVVATVAFGMGI++ +
Sbjct: 245 SRNKVEDVAARLQKRGLSVAAYHAGLDNSQREWVQDAFLKDNLQVVVATVAFGMGINKSN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF+IP+++E++YQE+GRAGRD + ++++L+Y D + L + + +
Sbjct: 305 VRFVAHFDIPRNIESYYQETGRAGRDGVSAEAVLFYDPADMAWLRRCLDEKPAGPQKDIE 364
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + M + + CRR +L FGE
Sbjct: 365 QHK---------LNAMGAFAQAQTCRRLVLLNYFGE 391
>gi|402492603|ref|ZP_10839363.1| ATP-dependent DNA helicase RecQ [Aquimarina agarilytica ZC1]
Length = 728
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 173/405 (42%), Positives = 238/405 (58%), Gaps = 28/405 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QFR Q I+++L D F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 6 LQKALKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS V T + D+ +G +LLYV PE
Sbjct: 66 PLIALMKNQVDAIRSISSENGIAHVLNSSLNKTDVAT-VKADISNG--ITKLLYVAPESL 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ L + ++ +A+DEAHCIS WGHDFRP YR L + + D +PI+ LT
Sbjct: 123 VKEEYAEFL----ASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIQSIGDNIPIIGLT 178
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + K+SFNRPNLFYEVR K + D+ +K N
Sbjct: 179 ATATPKVQEDILKNLGISGANTFKASFNRPNLFYEVRPKTA--NVETDIIRFVKQNTGKS 236
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI+ YHAGL+ K R+ D ++ VVVAT+AFGM
Sbjct: 237 GIIYCLSRKRVEELAQALQVNGINAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGM 296
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H++IPKS+E++YQE+GRAGRD L YY D ++E
Sbjct: 297 GIDKPDVRFVVHYDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLE--------- 347
Query: 381 NSQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I + ++V + E S RRK IL FGE+
Sbjct: 348 ---KFMSGKPVAEQEIGNALLQEVVAFAETSISRRKFILHYFGEE 389
>gi|358638633|dbj|BAL25930.1| ATP-dependent DNA helicase protein [Azoarcus sp. KH32C]
Length = 609
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/425 (40%), Positives = 247/425 (58%), Gaps = 29/425 (6%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
MQ+ S + + PLH E + FG+ FR +Q + V +G D LMPTGGGKS
Sbjct: 1 MQAMSNSIRPFPLHVLEHV-------FGYTAFRGEQEAIVTHVGAGGDALVLMPTGGGKS 53
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+CYQ+PAL + G +VVSPLIALM++QV L+E G+A +L+S+Q + DL G
Sbjct: 54 LCYQVPALLRSGTAVVVSPLIALMQDQVSALQEAGVAAAYLNSSQAQDESAAVERDLIEG 113
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
+ L LLYV PE T + L ++H + L AIDEAHC+S WGHDFRP Y +LS L
Sbjct: 114 R--LDLLYVAPERLLTARLLGTLDRLHRDRRIALFAIDEAHCVSQWGHDFRPEYLQLSVL 171
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA 247
P VP +ALTATA P+ ++++ L L SSF+RPN+ Y + KD +
Sbjct: 172 PERYPGVPRIALTATADPETREEIAARLGLAEARRFVSSFDRPNIRYRMVDKD---NPRN 228
Query: 248 DLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
L + ++ + GD IVYCL R +E +A+L GI YHAG+ R++ + ++
Sbjct: 229 QLLAFIREDHEGD-AGIVYCLSRRKVEETAAWLEEQGIRSLPYHAGMPQDVRAANQNRFL 287
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
V+VAT+AFGMGID+ DVR V H ++P+S+E +YQE+GRAGRD LPS++ + +G
Sbjct: 288 REDGIVMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPSQAWMAWGAQ 347
Query: 366 D---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
D +RRM ++S+ ++ F R R+ +V E + CRR+ +L FGE
Sbjct: 348 DIVQQRRM-----IDESEGNEDFKRRARAR------LDALVGLVETTACRRQHLLAHFGE 396
Query: 423 QVLGC 427
+ C
Sbjct: 397 EGQAC 401
>gi|119355903|ref|YP_910547.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides DSM
266]
gi|119353252|gb|ABL64123.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides DSM
266]
Length = 619
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 241/398 (60%), Gaps = 18/398 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
AL + LR FG FR Q ++ ++ RD F +MPTGGGKS+CYQ+PA+ PG +V+
Sbjct: 18 ALYETLRKVFGFRDFRPNQEMIVRTIIEKRDVFAVMPTGGGKSLCYQLPAVLLPGTCMVI 77
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV G + GI FL+S+ + +T + D SL LLYV PE
Sbjct: 78 SPLIALMKDQVDGARANGIRAAFLNSSLAPEERTLVLRD--LLSNSLDLLYVAPERFTLD 135
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F LK+++ +++ IDEAHCIS WGHDFRP Y LS L PD+P+ A TATA
Sbjct: 136 QFQEMLKRVN----ISMAVIDEAHCISEWGHDFRPDYLSLSQLVTLFPDLPVAAFTATAT 191
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+VQ+D+++ L L+NP V+++SF+R NL+Y++R+K ++A L ++LK N I+Y
Sbjct: 192 HQVQRDILDKLALRNPFVVRASFDRANLYYDIRFK---ENASDQLVALLKQNSGKAGIIY 248
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
R + +E +A L A G YHAGL D R + +I V+VATVAFGMGID+
Sbjct: 249 RTSRKSVNETAALLKAKGFRVLPYHAGLGDDERKQNQEAFIRDEVDVIVATVAFGMGIDK 308
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
++R V H ++PKS+E +YQE+GRAGRD ++ L + D ++ F + Q + ++
Sbjct: 309 SNIRFVIHADLPKSIENYYQETGRAGRDGEAARCTLLFSQSDIPKVRFFIDAMQDETERA 368
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+++ FS+++ + S CRRK +L+ FGE
Sbjct: 369 ---------RALGAFSKVISFASTSVCRRKTLLDYFGE 397
>gi|281206277|gb|EFA80466.1| ATP-dependent DNA helicase RecQ family protein [Polysphondylium
pallidum PN500]
Length = 842
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/434 (39%), Positives = 253/434 (58%), Gaps = 11/434 (2%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLL----RWHFGHAQFRDKQLDAIQAVLSGRDC 56
++ +PL + T + K PL++ + + R FG+ + R Q DAI +VL RD
Sbjct: 354 LEDAPLTV--TPENAKQSPLNQAFPWDRFVEGCNRLVFGNERLRPLQSDAINSVLYRRDT 411
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F +PTGGGKS+C+Q+PA+ G+ LV+SPL+ALM +Q+ L + G+ L+S+ +
Sbjct: 412 FVSLPTGGGKSLCFQLPAIIDSGVTLVISPLLALMFDQLSKLLQLGVPTCALNSSVPVSE 471
Query: 117 KTKIYEDL-DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
K KI ++L D +LLYVTPE T F+ L+ +++ L + IDEAHCIS WGH
Sbjct: 472 KKKIIKELLDPAGCPYKLLYVTPERMKTQEFIDILEHLNNTSQLKRLVIDEAHCISEWGH 531
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR YRKLS R P++PI+ALTATA PKV+ D+ + L + N + ++ SF R NL YE
Sbjct: 532 DFRKDYRKLSKFREMFPNIPIVALTATATPKVELDIKQQLSMHNTINIRGSFIRSNLKYE 591
Query: 236 VRYKDLLDD-AYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293
VR K + + D+ + N ++ IVYC C+ L YL+ G+S YHA LN
Sbjct: 592 VRKKSTEPEFCFNDIYHFVNRNHKNSSGIVYCSTIAECESLCEYLTDRGLSVDFYHASLN 651
Query: 294 DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353
R + WI+ + ++V T+AFGMGID+ D R V H +IP S+E++YQ++GRAGRD
Sbjct: 652 AAQRVDTQERWITGKFKIVCTTIAFGMGIDKPDTRFVIHHSIPSSIESYYQQTGRAGRDG 711
Query: 354 LPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRR 413
S +LYY +D R+M I + +QS ++ + + + YC GS CRR
Sbjct: 712 KLSDCILYYNKNDIRKMLKISTMGIV--AQSHEEYQKIMESKTENIDTVTSYCVGSECRR 769
Query: 414 KKILESFGEQVLGC 427
++E FGE+ C
Sbjct: 770 VSLMEYFGEETKPC 783
>gi|197287158|ref|YP_002153030.1| ATP-dependent DNA helicase RecQ [Proteus mirabilis HI4320]
gi|227357149|ref|ZP_03841518.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|425070259|ref|ZP_18473373.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
gi|425074080|ref|ZP_18477185.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|194684645|emb|CAR46565.1| ATP-dependent DNA helicase [Proteus mirabilis HI4320]
gi|227162681|gb|EEI47648.1| ATP-dependent DNA helicase [Proteus mirabilis ATCC 29906]
gi|404594320|gb|EKA94907.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW4]
gi|404595525|gb|EKA96065.1| ATP-dependent DNA helicase recQ [Proteus mirabilis WGLW6]
Length = 609
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 238/397 (59%), Gaps = 22/397 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ QFR Q + I +++GRDC +MPTGGGKS+CYQIPAL G+ +VVSPLI
Sbjct: 16 ILRETFGYQQFRPGQQEIIDTIITGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L GI FL+STQ+ + ++ G+ ++LLY+ PE F+
Sbjct: 76 SLMKDQVDQLCLHGIDAAFLNSTQSRDEQLQVQMRCQRGE--IKLLYIAPERLMMESFLH 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + L+A+DEAHCIS WGHDFRP YR + LR YLPDVPI+ALTATA +
Sbjct: 134 HLVQWQP----ALLAVDEAHCISQWGHDFRPEYRGIGLLRQYLPDVPIIALTATADNTTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
D++ L L+ PLV SSF+RPN+ Y + +YK L L ++ I+YC
Sbjct: 190 HDIINQLALRTPLVHISSFDRPNIRYTLVEKYKPL-----DQLWLFIRGQKGKSGIIYCN 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R+ +E + L G+S AAYHAG++ R+ V D + Q+VVATVAFGMGI++ +
Sbjct: 245 SRSKVEETAERLGKRGLSIAAYHAGMDIATRAKVQDAFQRDDLQIVVATVAFGMGINKPN 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D + L + ++
Sbjct: 305 VRFVVHFDIPRNIESYYQETGRAGRDGLPAQAVLFYDPADMAWLRRCLDEKPESEQKAIE 364
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + + M + E CRR +L FGE
Sbjct: 365 SHK---------LNAMGAFAEAQTCRRLVLLNYFGEH 392
>gi|355672902|ref|ZP_09058623.1| hypothetical protein HMPREF9469_01660 [Clostridium citroniae
WAL-17108]
gi|354814929|gb|EHE99527.1| hypothetical protein HMPREF9469_01660 [Clostridium citroniae
WAL-17108]
Length = 787
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 240/396 (60%), Gaps = 10/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FR+ Q I +L+GRD F +MPTG GKS+C+QIPAL GI LV+SPL
Sbjct: 5 QVLKQYFGYDTFREGQEALIDGILAGRDVFGIMPTGSGKSLCFQIPALMMEGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + G+ +L+S+ T K G+ ++YV PE T GF+
Sbjct: 65 ISLMKDQVSTLNQAGVHAAYLNSSLTAGQYYKALSLAREGR--YPIIYVAPERLETEGFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+H++ + +VA+DE+HC+S WG DFRPSY K+ LP P++ A TATA +
Sbjct: 123 DF--ALHAK--ITMVAVDESHCVSQWGQDFRPSYLKIVDFIKKLPKRPVVSAFTATATKE 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V++D+++ L LQ+P+V+ + ++RPNL+ V+ D YA L + ++ + C I+YCL
Sbjct: 179 VREDIIDILMLQDPVVVTTGYDRPNLYLGVQSPK---DKYAALKNFVEIHPGQCGIIYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+S L A GIS YHAGL+DK R DD+I R QV+VAT AFGMGID+ +
Sbjct: 236 TRKLVEEVSDRLRADGISVTRYHAGLSDKERRQNQDDFIYDRCQVMVATNAFGMGIDKSN 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PKS+EAFYQE GR RDQ P + +L+Y D + + NQ
Sbjct: 296 VRYVIHYNMPKSIEAFYQEIGRCSRDQEPGECILFYSGQDVVTNQLFIDNNQDNQELDPL 355
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
TR+ ++ +M YC + C R IL FGE
Sbjct: 356 TRQIVQERDRDRLRKMTFYCFTNECLRDYILRYFGE 391
>gi|154281633|ref|XP_001541629.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411808|gb|EDN07196.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1557
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/396 (42%), Positives = 236/396 (59%), Gaps = 20/396 (5%)
Query: 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVSPLIALMENQ 94
FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+SPL++LME+Q
Sbjct: 687 FRPNQLEAINATLSGKDAFVLMPTGGGKSLCYQLPSVIQSGTTKGVTVVISPLLSLMEDQ 746
Query: 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTATPG-FMSKLK 151
V LK I L+ + + K IY L + + ++LLYVTPE+ G + L
Sbjct: 747 VAHLKRLHIQAFLLNGDVSREGKKVIYGALRNARVEHLIQLLYVTPEMVNKNGALLDILS 806
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTATA V+ DV
Sbjct: 807 HLHSRHKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTRFPGIPLMALTATATENVKVDV 866
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269
+ +L +++ V SFNRPNL YEVR K + + +K NG I+YCL R
Sbjct: 867 IHNLGMRDAEVFVQSFNRPNLIYEVRQKPKGTNVVDGIAETIKTSYNG-QAGIIYCLSRQ 925
Query: 270 TCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+C+ ++ L I+ A YHAGL + R S+ DW S + V+VAT+AFGMGID+ DVR
Sbjct: 926 SCERVAEQLRETHKINAAHYHAGLPAEDRISIQTDWQSGKCSVIVATIAFGMGIDKPDVR 985
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K + N Q R
Sbjct: 986 FVIHHSMPKSLEGYYQETGRAGRDGKRSGCYLYYGFQDTATIRNMIDKGEGSNEQKSRQR 1045
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ +V +CE S CRR +IL F E+
Sbjct: 1046 QM--------LRHVVQFCENRSDCRRVQILAYFNEK 1073
>gi|325300153|ref|YP_004260070.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
gi|324319706|gb|ADY37597.1| ATP-dependent DNA helicase RecQ [Bacteroides salanitronis DSM
18170]
Length = 727
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 242/402 (60%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG F+ Q I+ +L+G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LAAQLKKYFGFDTFKGNQEAIIRNLLAGKDTFVLMPTGGGKSLCYQLPSLLMEGTAIVIS 66
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A F++S+ T ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDAMRNYSEEDGVA-HFINSSLTKSAIDQVKADILAGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + N + P++ALTA
Sbjct: 124 TKEENVEFLKHVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIINEIGKAPVIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKV+ D+ ++L + + + KSSFNRPNL+YEVR K + D D+ +K N +
Sbjct: 180 TATPKVKMDIQKNLGMTDAVEFKSSFNRPNLYYEVRSKTVNIDK--DIIRFIKQNPEKSG 237
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L A GI YHAG++ R++ D ++ V+VAT+AFGMG
Sbjct: 238 IIYCLSRKKVEELAEILQANGIKARPYHAGMDSATRNANQDAFLKEDIDVIVATIAFGMG 297
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E K
Sbjct: 298 IDKPDVRFVIHYDMPKSLEGYYQETGRAGRDGGEGQCITFYSNKDLQKLE--------KF 349
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ K + + Y E S CRRK +L FGE+
Sbjct: 350 MQGKPVSEQEIGKQL--LLETAAYAESSLCRRKVLLHYFGEE 389
>gi|300771774|ref|ZP_07081645.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33861]
gi|300761160|gb|EFK57985.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33861]
Length = 729
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 244/411 (59%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+++L L+ FG F+ Q I VL+ +D F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 EKSLFDNLQDFFGFDTFKGDQEAIITNVLNKKDTFVIMPTGGGKSICYQLPALMSQGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ TK+ +D+ GK +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGTDSIAHFLNSSLNKGEITKVKQDVTQGKT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
+ + L++I ++ VA+DEAHCIS WGHDFRP YRK+ + N + ++PI+A
Sbjct: 122 SLSKDENIEFLRQI----TVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + + KSSFNR NL+YEVR K + ++ +K N
Sbjct: 178 LTATATPKVQSDIRKNLQMTDATLFKSSFNRTNLYYEVRTKK---NVVKEIVRFIKNNSG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E++ L+ GI YHAGL+ K R+ D ++ +V+VAT+AF
Sbjct: 235 KTGIVYCLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGVCVTFYSEKDVEKLTKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E + CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYSESAVCRRKQILHYFGENFDEAGC 395
>gi|6692125|gb|AAF24590.1|AC007654_6 T19E23.16 [Arabidopsis thaliana]
Length = 849
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 176/432 (40%), Positives = 257/432 (59%), Gaps = 37/432 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 119 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 178
Query: 94 Q-------------VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
Q V+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE
Sbjct: 179 QYVCYDQLLLMIVQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEK 238
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
++ + FMSKL+K H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++AL
Sbjct: 239 VSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVAL 298
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKA 255
TATA KVQ D++E L + + SS NRPNLFY VR K L+ D A+ +
Sbjct: 299 TATATQKVQNDLIEMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYS 358
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N ++ IVYC R C++++ L GIS YHA ++ R V W ++ QV+V T
Sbjct: 359 NNES-GIVYCFSRKECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGT 417
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQ-----------ESGRAGRDQLPSKSLLYYGM 364
VAFGMGI++ DVR V H ++ KSME +YQ ESGRAGRD LPS+ +L++
Sbjct: 418 VAFGMGINKPDVRFVIHHSLSKSMETYYQVPVSCPLKLDIESGRAGRDGLPSECILFFRS 477
Query: 365 DDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
D R + +LS + ++S F E S +++ D +V YC+ + CRR FGE
Sbjct: 478 ADVPR-QLMLSFSPQQSSMVFY--EYSGLQNLYD---IVRYCQSKTKCRRSAFFRHFGEP 531
Query: 424 VLGCVASVTHRV 435
C + +R+
Sbjct: 532 SQDCNGILVYRM 543
>gi|229496706|ref|ZP_04390420.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
gi|229316603|gb|EEN82522.1| ATP-dependent DNA helicase RecQ [Porphyromonas endodontalis ATCC
35406]
Length = 724
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 242/403 (60%), Gaps = 23/403 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
L+ L+ HFG F++ Q + I A+L G+DCF LMPTGGGKSMCYQ+PAL G +++
Sbjct: 4 TLLAHLKEHFGFETFKNHQEEIICALLEGKDCFVLMPTGGGKSMCYQLPALISEGTAIII 63
Query: 85 SPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
SPLIALM+NQV L+ + + F SS + Q+ + +D +G+ +LLYVTPE
Sbjct: 64 SPLIALMKNQVDALRSYCNDDCVVHFFNSSLRKSQMDL-VRQDTLAGRT--KLLYVTPEC 120
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ L+ I ++ AIDEAHCIS WGHDFRP YRK+ + + + PI+ALT
Sbjct: 121 LTKEENQAFLQSIS----ISFFAIDEAHCISEWGHDFRPEYRKIRPMIDVIGRRPIIALT 176
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKV+ D++ +L + + +SSFNRPNLFY + K+ +D ++ + +N
Sbjct: 177 ATATPKVEHDILRTLQIPQAHIFRSSFNRPNLFYSILPKN--EDVDRNIVRFVLSNPQKS 234
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC+ R+ + L GI YHAGL+ + R++ D ++S QV+VAT+AFGM
Sbjct: 235 GIVYCMSRSKVTTFAKILRINGIRALPYHAGLDAQERAANQDAFLSEECQVIVATIAFGM 294
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H+++PKS+E +YQE+GRAGRD + YY D +R+E K
Sbjct: 295 GIDKPDVRFVIHYDMPKSLEGYYQETGRAGRDGGEGVCIAYYSQSDMQRLE--------K 346
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q S ER K + ++ +Y E + CRRK +L FGE+
Sbjct: 347 FMQDKSNSEREIGKQL--LAETSNYAESALCRRKLLLHYFGEE 387
>gi|302308466|ref|NP_985391.2| AFL159Wp [Ashbya gossypii ATCC 10895]
gi|299790644|gb|AAS53215.2| AFL159Wp [Ashbya gossypii ATCC 10895]
Length = 1323
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/427 (39%), Positives = 258/427 (60%), Gaps = 21/427 (4%)
Query: 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGG 64
P A+Q TS+ E KL F FR QL+A+ A L G+D F LMPTGG
Sbjct: 532 PEALQDTSEPHALTHPWSAELYHKLHNV-FKLPGFRPNQLEAVNATLQGKDVFVLMPTGG 590
Query: 65 GKSMCYQIPALAKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
GKS+CYQ+PA+ K G +V+SPLI+LM +QV L K I SS T + + +
Sbjct: 591 GKSLCYQLPAIVKAGCTHGTTIVISPLISLMHDQVEHLLAKNIKASMFSSKGTAEQRRQT 650
Query: 121 YEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ +G L L+Y++PE+ +A+ + ++K++ L + +DEAHC+S+WGHDFRP
Sbjct: 651 FNLFINGL--LDLVYISPEMVSASVQCRNAIQKLYRDKKLARIVVDEAHCVSNWGHDFRP 708
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
Y++L + PD+P+LALTATA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K
Sbjct: 709 DYKELKFFKVEYPDIPMLALTATASEQVRMDIIHNLHLKEPVFLKQSFNRSNLYYEVLRK 768
Query: 240 DLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
D ++ D+ +K G T I+YC + +C++ +A + G+ CA YHAG+ R
Sbjct: 769 D--KNSLKDISHSIKTRFKGQT-GIIYCHSKNSCEQTAAIVQDSGVRCAYYHAGMEPDER 825
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
++ W S + QV+ ATVAFGMGID+ DVR V H+ +P+++E +YQE+GRAGRD S
Sbjct: 826 LAIQQQWQSDKIQVICATVAFGMGIDKPDVRFVYHYTVPRTLEGYYQETGRAGRDGKYSY 885
Query: 358 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 416
++YY D R ++ ++ K+++ + + + +K ++ Q++ YCE + CRR+ +
Sbjct: 886 CIMYYSFRDVRNIQSMIQKDKNLDRE-------NKEKHLTKLQQVMQYCENTTDCRRQLV 938
Query: 417 LESFGEQ 423
L F EQ
Sbjct: 939 LSYFNEQ 945
>gi|254523679|ref|ZP_05135734.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas sp. SKA14]
gi|219721270|gb|EED39795.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas sp. SKA14]
Length = 601
Score = 316 bits (810), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 242/406 (59%), Gaps = 23/406 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
++P H+ LL+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL
Sbjct: 3 SRPAHD------LLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALL 56
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +V+SPLIALM++QV L++ G+ E+L+ST + ++ +L +G+ L +LYV
Sbjct: 57 RDGCGIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGE--LDMLYV 114
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE T F+S L + H + L AIDEAHC+S WGHDFRP YR+L+ L PD+P
Sbjct: 115 APERLLTGRFLSLLSRSH----IALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPDIPR 170
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA P Q+++ E L L SSF+RPN+ Y V KD +A L L+ +
Sbjct: 171 IALTATADPPTQREIAERLDLAEARHFVSSFDRPNIRYTVVQKD---NARKQLTDFLRGH 227
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYC+ R +E + +L G + YHAGL + R++ ++ V+ AT+
Sbjct: 228 RSEAGIVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATI 287
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD +++ L YG+ D +L K
Sbjct: 288 AFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLK 342
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S++ R++ + S ++ YCE CRR+ +L FGE
Sbjct: 343 QMIEQSEASEERKQLER---SKLDHLLGYCESMQCRRQVLLAGFGE 385
>gi|289208024|ref|YP_003460090.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
gi|288943655|gb|ADC71354.1| ATP-dependent DNA helicase RecQ [Thioalkalivibrio sp. K90mix]
Length = 626
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 241/403 (59%), Gaps = 17/403 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A + +LR FG++ FR +Q I+ V +G D LMPTGGGKS+CYQIPALA+PG +V+
Sbjct: 19 APLDILRETFGYSDFRGQQQAVIEHVTAGGDAVVLMPTGGGKSLCYQIPALARPGCAVVI 78
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ G+A L S Q + + L +G+ L LLY++PE
Sbjct: 79 SPLIALMQDQVAALRQNGVAAASLDSGQNAETARGVLAALHAGE--LDLLYLSPERLFAS 136
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
G + +L+ I L L AIDEAHC+S WGHDFRP Y +L+ L + PDVP +ALTATA
Sbjct: 137 GMLERLQGIE----LALFAIDEAHCVSQWGHDFRPEYGQLAVLAEHFPDVPRMALTATAD 192
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYAD--LCSVLKANGDTCA 261
++++ E L L+ SSF+RPN+ Y V D A D L + + +
Sbjct: 193 GPTRQEIRERLRLEQARAFISSFDRPNIRYRVAQADGGRGGAPRDRLLRFIREEHAGEAG 252
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R D ++ +L+ G+ YHAGL+ + R+ ++ V+VAT+AFGMG
Sbjct: 253 IVYCLSRKKVDAVAEWLAEQGVPALPYHAGLSARTRAENQTRFLREEGVVMVATIAFGMG 312
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ +VR V H N+PKS+E +YQE+GRAGRD LP+ + + YG+ D + + +
Sbjct: 313 IDKPNVRFVAHMNLPKSLEGYYQETGRAGRDGLPANAWMVYGLQD-----VVTLRQMLEG 367
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
SQ+ R+R ++ + M+ +CE + CRR+ +L F E +
Sbjct: 368 SQAGPERQRIEQQKL---DAMLGFCEITSCRRQALLAYFDEHM 407
>gi|328770877|gb|EGF80918.1| hypothetical protein BATDEDRAFT_10941 [Batrachochytrium
dendrobatidis JAM81]
Length = 573
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/405 (41%), Positives = 245/405 (60%), Gaps = 17/405 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IV 81
+ K+L+ F FR QL++I A L+ DCF LMPTGGGKS+CYQ+PA G +
Sbjct: 32 VFKVLQEVFHLTDFRQNQLESINATLNSIDCFILMPTGGGKSLCYQLPACCTTGKTTGLT 91
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+V+SPL++L+++QV L + I +SS + + K Y++L +++YVTPEL
Sbjct: 92 VVISPLLSLIQDQVSRLVQLNILAIAISSDMSAEDKRWAYDELRKEPLPPKMIYVTPELV 151
Query: 142 ATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
G F + L + RG L +DEAHC+S WGHDFRP Y++LS+LR P VPI+ALT
Sbjct: 152 MRSGQFKTALNDLFRRGRLARFVVDEAHCVSQWGHDFRPDYKELSTLRVQYPTVPIIALT 211
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDT 259
ATA KV+ D+++ L + + SFNR NL Y+VR KD DA D+ + +K +
Sbjct: 212 ATANDKVKMDIIKVLNIPQCAKFQQSFNRSNLRYDVRKKDKGLDA--DITAFIKTFYPNA 269
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R C+ SA L GI A YHAGL+ + RS + W ++ ++VAT+AFG
Sbjct: 270 SGIIYCSSRKACEATSAKLCKLGIKAAFYHAGLDKEDRSRIQTAWATNSVHIIVATIAFG 329
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H++IP+S+E +YQE+GRAGRD S +LYY D+ ++F++ +
Sbjct: 330 MGIDKGDVRFVIHYSIPQSLEGYYQETGRAGRDGKDSMCILYYAYKDKSTIDFLIENGEG 389
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
Q R+R ++ Q++ YCE CRR+++L FGE+
Sbjct: 390 NYEQ--KERQR------NNLRQIISYCENLVDCRRQQVLAYFGER 426
>gi|429091857|ref|ZP_19154510.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
gi|429099036|ref|ZP_19161142.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426285376|emb|CCJ87255.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 582]
gi|426743518|emb|CCJ80623.1| ATP-dependent DNA helicase RecQ [Cronobacter dublinensis 1210]
Length = 609
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/406 (42%), Positives = 245/406 (60%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + SG+ +RLLY+ P
Sbjct: 66 GLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRSGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L + L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDSLSYWN----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L++PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLEDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|323482952|ref|ZP_08088350.1| hypothetical protein HMPREF9474_00099 [Clostridium symbiosum
WAL-14163]
gi|323691612|ref|ZP_08105875.1| ATP-dependent DNA helicase RecQ [Clostridium symbiosum WAL-14673]
gi|323403732|gb|EGA96032.1| hypothetical protein HMPREF9474_00099 [Clostridium symbiosum
WAL-14163]
gi|323504338|gb|EGB20137.1| ATP-dependent DNA helicase RecQ [Clostridium symbiosum WAL-14673]
Length = 618
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 241/396 (60%), Gaps = 10/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ +FR+ Q I ++L+GRD +MPTG GKS+C+Q+PAL GI LV+SPL
Sbjct: 5 QVLKQYFGYEEFREGQEGLIDSILAGRDTLGIMPTGAGKSLCFQVPALMMKGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +L+S+ T+ K G+ + +YV PE T F+
Sbjct: 65 ISLMQDQVSALNQAGIHAAYLNSSLTVNQYYKALSYAREGRYPI--IYVAPERLVTEEFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
IH+ + +V +DEAHC+S WG DFRPSY K+ + LP P+L A TATA +
Sbjct: 123 DF--AIHAE--IAMVVVDEAHCVSQWGQDFRPSYLKIMEFIDKLPKRPVLSAFTATATKE 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ DV++ L L+ P V+ + F+RPNL++ V+ D YA + + ++ + I+YCL
Sbjct: 179 VRDDVIDILRLREPNVVTTGFDRPNLWFSVQAPK---DRYATMKNYIECHPGQSGIIYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T +E+S L+ G YHAGL+D R +D+I R+ ++VAT AFGMGID+ D
Sbjct: 236 TRKTVEEVSGRLAKEGFLVTRYHAGLSDAERKRNQEDFIYDRRSLMVATNAFGMGIDKSD 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK++E++YQE+GRAGRD P++ +L YG D +F + NQ + F+
Sbjct: 296 VRFVIHYNMPKNIESYYQEAGRAGRDGEPAECILLYGGQDVVTNQFFIDNNQDNDELDFA 355
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
RE ++ +M YC + C R IL FGE
Sbjct: 356 ARELVKERDRERLRRMTYYCFTNECLRDYILRYFGE 391
>gi|330841793|ref|XP_003292875.1| hypothetical protein DICPUDRAFT_157642 [Dictyostelium purpureum]
gi|325076832|gb|EGC30587.1| hypothetical protein DICPUDRAFT_157642 [Dictyostelium purpureum]
Length = 884
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/440 (38%), Positives = 255/440 (57%), Gaps = 17/440 (3%)
Query: 5 PLAMQSTSQTQKNKPL---HEKEALVKLL-RWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
P+ MQS S + L HE ++LV R FG++ FR Q I ++L GRD F +
Sbjct: 377 PIKMQSPSSNAIDGVLEKEHEWDSLVDSCNRMVFGNSSFRPLQQQVINSILHGRDTFVSL 436
Query: 61 PTGGGKSMCYQIPALAKP-GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT-MQVKT 118
PTGGGKS+C+QIP+L GI +V+SPL++LM++QV LK G+ ++S+ T +Q +
Sbjct: 437 PTGGGKSLCFQIPSLVDSSGISIVLSPLLSLMQDQVHKLKLLGVPACSINSSNTPLQNRK 496
Query: 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178
I + LD ++ ++YV+PE + F+ L ++++G + + +DEAHCIS WGHDFR
Sbjct: 497 TIEQLLDKDNCNISIVYVSPERLSQTEFLEVLNTLNNQGRIKRLIVDEAHCISEWGHDFR 556
Query: 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY 238
P+YRK+S R P+VPI A TATA P V+ D+ L L NP+ + SSF R NL Y++R
Sbjct: 557 PAYRKISLFRENFPNVPIAAFTATAKPSVESDIKNELKLHNPVTIASSFLRTNLLYQIRS 616
Query: 239 KDLLDD-AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKA 296
K ++AD+ +K +C I+YC C+ LS YL+ I YH L +
Sbjct: 617 KSPDQSRSFADIADYIKMRQSRSCGIIYCATTNDCELLSQYLNEENIDSHFYHGSLKNSE 676
Query: 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356
R + W + +++V T+AFGMGID KDVR + H+ +P S+EA+YQ++GRAGRD LPS
Sbjct: 677 RVEIQKAWTNKSFKIIVTTLAFGMGIDVKDVRFIIHYTMPSSIEAYYQQTGRAGRDGLPS 736
Query: 357 KSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERS--------SKKSISDFSQMVDYCEG 408
+ +LYY +D ++ I+ +S F + E+ ++ + + +C
Sbjct: 737 ECILYYTSNDYFKISRIIQTQAQPSSSYFYSEEQELVAQKQQMTENKVELLDSINSFCRN 796
Query: 409 SG-CRRKKILESFGEQVLGC 427
CRR ++L+ FGE C
Sbjct: 797 DDVCRRVQLLDYFGEVSKPC 816
>gi|345429420|ref|YP_004822538.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
gi|301155481|emb|CBW14947.1| ATP-dependent DNA helicase [Haemophilus parainfluenzae T3T1]
Length = 621
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 246/404 (60%), Gaps = 24/404 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + +LR FG+ FR Q + I A LSG+D +M TG GKS+CYQIPAL PG+ L
Sbjct: 15 KTTALNMLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTL 74
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L+ GI +FL+S+QT + + ++ L SG+ L+LLYV+PE
Sbjct: 75 VISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQ--LKLLYVSPEKVM 132
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+ PI+ALTAT
Sbjct: 133 TNSFF----QLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTAT 188
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L L +P SF+RPN+ Y E ++K + L + A
Sbjct: 189 ADYATRQDILTHLKLDHPHKYIGSFDRPNIRYTLEEKFKPM-----EQLTRFVLAQKGKS 243
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R+ + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFGM
Sbjct: 244 GIVYCNSRSKVERIAETLRNKGVSAAAYHAGMETALRERVQQDFQRDNIQVVVATIAFGM 303
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y + D ++ +L K+++
Sbjct: 304 GINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYELADYAWLQKILLEKSET 363
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ ++I +F+ E CRR +L FGE
Sbjct: 364 PQRQI----EQHKLEAIGEFA------ESQTCRRLVLLNYFGEH 397
>gi|242237700|ref|YP_002985881.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
gi|242129757|gb|ACS84059.1| ATP-dependent DNA helicase RecQ [Dickeya dadantii Ech703]
Length = 607
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 249/403 (61%), Gaps = 23/403 (5%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+EAL ++LR FG+ QFR Q I A +SGRDC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 REALAAQILRETFGYQQFRPGQQAIIHAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + + SG+ +RLLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQMAVIAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
GF+ + + +L+AIDEAHCIS WGHDFRP YR+L ++ P +P++ALTA
Sbjct: 127 TNEGFLEQFTGWNP----SLIAIDEAHCISQWGHDFRPEYRELGYIKQRFPQLPVVALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L L++PLV SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIIRLLGLRDPLVQISSFDRPNIRYTLVEKFKPL-----DQLWLFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R +++SA L G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDISARLQNRGLSVGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPASAQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|339243055|ref|XP_003377453.1| ATP-dependent DNA helicase Q1 [Trichinella spiralis]
gi|316973743|gb|EFV57302.1| ATP-dependent DNA helicase Q1 [Trichinella spiralis]
Length = 605
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 229/396 (57%), Gaps = 21/396 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG--IVLVVSPLIALM 91
FG FR QL A+ A+LSGRD M TGGGKS+ YQ+PA+ LV+SPL++LM
Sbjct: 82 FGMNSFRPLQLSAMNAILSGRDVLLTMSTGGGKSLTYQLPAVLGNASQFTLVISPLVSLM 141
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKL 150
E+QVI L +GI L + +I +++S RLLYVTPE L + FM+KL
Sbjct: 142 EDQVISLNTRGIEAVLLYQHTPPEEMKRILAEMNSPGCKFRLLYVTPERLAKSKRFMAKL 201
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210
+K + GLL L+AIDE HC S WGHDFRP Y+ L LR PD PIL LTATA V +D
Sbjct: 202 EKAYQAGLLKLIAIDEVHCCSQWGHDFRPDYKFLGVLRRQFPDTPILGLTATATVAVLQD 261
Query: 211 VMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYCLER 268
+ E L + L ++SFNRPNLFY+V+ K D ++ +C +LK I+YC +
Sbjct: 262 IKEILNIPMALEFRASFNRPNLFYQVQQKPDRPEELLQIVCKLLKGQFSGQSGIIYCFSK 321
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ + L G+ YHA ++ R V W+S++ QV+VATVAFGMGID+ DVR
Sbjct: 322 KDSETFAQNLRTNGVKAEHYHADMDPNERGMVHRKWLSNKCQVIVATVAFGMGIDKADVR 381
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
+V H +PKS+E +YQESGRAGRD P+ LLY+G D R+ +
Sbjct: 382 VVIHLALPKSVENYYQESGRAGRDGQPASCLLYFGFADLFRLSVTVC------------- 428
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+ + + + +M+ YC G + CRR+ + F EQ
Sbjct: 429 --NERNGLENLYKMLAYCTGLASCRRRYFADHFDEQ 462
>gi|270010585|gb|EFA07033.1| hypothetical protein TcasGA2_TC010005 [Tribolium castaneum]
Length = 1017
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 176/429 (41%), Positives = 244/429 (56%), Gaps = 18/429 (4%)
Query: 5 PLAMQSTSQTQKNKPLHE-------KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCF 57
P A QS T + HE E + ++L FG FR Q + I A L+ +DCF
Sbjct: 256 PEATQSGVFTGRTDDSHEFRKKYPHTEVMYEVLHQKFGLRHFRPHQEEIINASLTQQDCF 315
Query: 58 CLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
LMPTGGGKS+CYQ+PA+ PG+ +V+SPL AL+ +QV L I L S
Sbjct: 316 VLMPTGGGKSLCYQLPAVLMPGVTIVISPLRALISDQVDKLNALDIPSAHLCSDVKKADV 375
Query: 118 TKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176
I++ L +P L+LLY+TPE ++A+ +K +++R L IDE HC+S WGHD
Sbjct: 376 DVIFQKLHVREPILKLLYLTPEKMSASGKVTDMIKSLYARNKLARFVIDEVHCLSQWGHD 435
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP Y++LS+LR P+VPI+ LTATA +VQ DV L L+NP SFNRPN+ Y V
Sbjct: 436 FRPDYKQLSNLRKQYPEVPIICLTATATKQVQGDVTNILGLKNPKTFIRSFNRPNIKYRV 495
Query: 237 RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
K+ + ++ ++K I+YCL R C++L+ L GI AYHAG++D
Sbjct: 496 IPKNGIK-VVEEITKLIKQRFYRKSGIIYCLCRADCEKLAEDLCKLGIKAKAYHAGMSDS 554
Query: 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355
R +W+ + V+VAT+AFGMGID+ DVR V H ++PKS+EAFYQESGRAGRD P
Sbjct: 555 IREKQQREWMQDQFHVIVATIAFGMGIDKPDVRFVIHNSMPKSVEAFYQESGRAGRDGEP 614
Query: 356 SKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRK 414
S S L+Y D R++ ++ ++ N + + QMV +CE CRR
Sbjct: 615 SYSYLFYSYADAGRLKRLMQMDRGVNKNALHGH-------YENLYQMVSFCENIVDCRRY 667
Query: 415 KILESFGEQ 423
L GE+
Sbjct: 668 LQLIHLGEK 676
>gi|354604692|ref|ZP_09022681.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
gi|353347271|gb|EHB91547.1| ATP-dependent DNA helicase RecQ [Alistipes indistinctus YIT 12060]
Length = 730
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 177/408 (43%), Positives = 250/408 (61%), Gaps = 30/408 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHE+ L+ +FG F+ Q + I+ VL+G+D F LMPTGGGKS+CYQ+PAL G
Sbjct: 9 LHER------LKEYFGFTSFKGNQEEVIRNVLAGKDTFVLMPTGGGKSLCYQLPALVMDG 62
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+ +++SPLIALM+NQV ++ E GIA FL+S+ K+ D+ +GK +LLY
Sbjct: 63 VAIIISPLIALMKNQVDAMRTFSMEDGIA-HFLNSSLNKAAVAKVKSDVLAGKT--KLLY 119
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP 195
PE +S L++I ++ AIDEAHCIS WGHDFRP YR++ + N + P
Sbjct: 120 FAPESLTKEDNVSFLRQIK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIINDIGAAP 175
Query: 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA 255
++ALTATA PKVQ D+ ++L + + V KSSFNRPNLFYEVR K +A ++ +K+
Sbjct: 176 LIALTATATPKVQMDIQKNLGMLDAAVFKSSFNRPNLFYEVRSKT---NATKEIIRYIKS 232
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
N I+YCL R +EL+ L+A I A YHAG++ R++ D +++ + V+VAT
Sbjct: 233 NPGKSGIIYCLSRKKVEELAELLAANSIKVAPYHAGMDAVTRAANQDAFLNEKVDVIVAT 292
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
+AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 293 IAFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGGGHCLTFYSYKDIQKLE---- 348
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K Q E+ K + + V Y E S CRRK +L FGE+
Sbjct: 349 ----KFMQGKPLAEQEIGKLL--LQETVSYAESSICRRKTLLHYFGEE 390
>gi|339021936|ref|ZP_08645916.1| DNA helicase RecQ [Acetobacter tropicalis NBRC 101654]
gi|338751063|dbj|GAA09220.1| DNA helicase RecQ [Acetobacter tropicalis NBRC 101654]
Length = 632
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 248/414 (59%), Gaps = 20/414 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q A++ ++ G D LMPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 31 EVLQSVFGYPDFRSLQAQAVKGIMDGEDTLVLMPTGGGKSICYQIPALCRAGMGLVVSPL 90
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S + KI DL +G+ + LLYV+PE PG +
Sbjct: 91 IALMDDQVAGLRQLGINAAALHSELENEEAAKIRSDLANGR--IDLLYVSPERLLAPGTL 148
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +R ++++AIDEAHCIS+WGH+FRP YR+L++L + P VP +ALTATA +
Sbjct: 149 ERL----TRQTISVIAIDEAHCISAWGHEFRPEYRELAALPRHFPGVPRIALTATADQRT 204
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D++ +L + + VL SSF+RPNL K L +VL+ + + IVYC
Sbjct: 205 RADILSALDMPHARVLISSFHRPNLNIAALPKA---SELRQLTTVLERHKEEACIVYCGS 261
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++A L G + A+HAGL+ + + L + S V+VATVAFGMGIDR DV
Sbjct: 262 RARTERIAASLRERGWTALAFHAGLSPIEKRAALLRFRSGEPIVIVATVAFGMGIDRPDV 321
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS ++L YG +D R + L ++ + ++
Sbjct: 322 RAVIHLDMPASPEAYYQQIGRAGRDGLPSDTVLLYGGEDMARARYWLDQSNAPETEKRVM 381
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV---LGCVASVTHRVVSF 438
R R M+ E +GCR + +L FGE + G + H V++F
Sbjct: 382 RAR--------LEAMIALTETTGCRTQALLHCFGETLNEPCGHCDTCQHPVITF 427
>gi|323343308|ref|ZP_08083535.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
gi|323095127|gb|EFZ37701.1| ATP-dependent helicase RecQ [Prevotella oralis ATCC 33269]
Length = 725
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 240/401 (59%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L++ L+ +FG +F+ Q I+ +L+G+D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LIEKLKHYFGFDKFKGDQEAIIRNLLAGKDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ +D+ +G+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVVNGMSEEEGVAHYLNSSLNKAAIQQVMDDVRNGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ L+ ++ ++ AIDEAHCIS WGHDFRP YR + N + + P++ALTAT
Sbjct: 125 KEENVEFLRGVN----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGNAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SLC+ KSSFNRPNL+YEVR K +D + +K + I
Sbjct: 181 ATDKVRTDIKKSLCITEAKEFKSSFNRPNLYYEVRQKS--NDIDRQVIKFIKQHPCKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELAAILLANEIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAQKDLQKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 351 EGKPVAEQDIGRQL--LQETAAYAESSVCRRKMLLHYFGEE 389
>gi|258542352|ref|YP_003187785.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01]
gi|384042273|ref|YP_005481017.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-12]
gi|384050790|ref|YP_005477853.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-03]
gi|384053898|ref|YP_005486992.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-07]
gi|384057132|ref|YP_005489799.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-22]
gi|384059773|ref|YP_005498901.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-26]
gi|384063065|ref|YP_005483707.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-32]
gi|384119141|ref|YP_005501765.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849726|ref|ZP_16282701.1| DNA helicase RecQ [Acetobacter pasteurianus NBRC 101655]
gi|256633430|dbj|BAH99405.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01]
gi|256636489|dbj|BAI02458.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-03]
gi|256639542|dbj|BAI05504.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-07]
gi|256642598|dbj|BAI08553.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-22]
gi|256645653|dbj|BAI11601.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-26]
gi|256648706|dbj|BAI14647.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-32]
gi|256651759|dbj|BAI17693.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256654750|dbj|BAI20677.1| DNA helicase RecQ [Acetobacter pasteurianus IFO 3283-12]
gi|371459457|dbj|GAB27904.1| DNA helicase RecQ [Acetobacter pasteurianus NBRC 101655]
Length = 626
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 173/414 (41%), Positives = 248/414 (59%), Gaps = 20/414 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG FR Q A++ V+ GRD LMPTGGGKS+CYQIPAL + G+ LV+SPL
Sbjct: 30 EVLQAVFGFPGFRSLQAQAVECVMEGRDTLVLMPTGGGKSVCYQIPALCREGMGLVISPL 89
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM++QV GL++ GI L S KI DL +G+ + LLY++PE + G +
Sbjct: 90 IALMDDQVAGLRQLGINAAALHSELEGDEAAKIRSDLANGR--IDLLYISPERLLSSGTL 147
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L +I L+++AIDEAHCIS+WGH+FRP YR L++L + P VP +ALTATA +
Sbjct: 148 DRLVRIP----LSVIAIDEAHCISAWGHEFRPEYRALTALPRHFPHVPRIALTATADERT 203
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ +L + + VL SSF+RPNL V+ K L + L+ + D +IVYC
Sbjct: 204 REDILAALDMPHAEVLVSSFHRPNLNISVQPKA---SETRQLITALERHKDAASIVYCGS 260
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++ L G AYHAGL+ + + L + S V+VAT+AFGMGIDR DV
Sbjct: 261 RARTERMATSLRERGWPALAYHAGLSPIEKRAALLRFRSGEPLVIVATIAFGMGIDRPDV 320
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S EA+YQ+ GRAGRD LPS +LL YG +D R + L ++ + S+
Sbjct: 321 RAVVHLDMPASPEAYYQQIGRAGRDGLPSDTLLLYGGEDMARARYWLDQSAAPESEKRIM 380
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL---GCVASVTHRVVSF 438
R R M+ E +GCR + +L FGE++ G + H V++F
Sbjct: 381 RSR--------LEAMIALTETTGCRTRALLHCFGEELAEPCGHCDNCLHPVLTF 426
>gi|374108619|gb|AEY97525.1| FAFL159Wp [Ashbya gossypii FDAG1]
Length = 1323
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/427 (39%), Positives = 258/427 (60%), Gaps = 21/427 (4%)
Query: 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGG 64
P A+Q TS+ E KL F FR QL+A+ A L G+D F LMPTGG
Sbjct: 532 PEALQDTSEPHALTHPWSAELYHKLHNV-FKLPGFRPNQLEAVNATLQGKDVFVLMPTGG 590
Query: 65 GKSMCYQIPALAKPG----IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
GKS+CYQ+PA+ K G +V+SPLI+LM +QV L K I SS T + + +
Sbjct: 591 GKSLCYQLPAIVKAGCTHGTTIVISPLISLMHDQVEHLLAKNIKASMFSSKGTAEQRRQT 650
Query: 121 YEDLDSGKPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ +G L L+Y++PE+ +A+ + ++K++ L + +DEAHC+S+WGHDFRP
Sbjct: 651 FNLFINGL--LDLVYISPEMVSASVQCRNAIQKLYRDKKLARIVVDEAHCVSNWGHDFRP 708
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
Y++L + PD+P+LALTATA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K
Sbjct: 709 DYKELKFFKVEYPDIPMLALTATASEQVRMDIIHNLHLKEPVFLKQSFNRSNLYYEVLRK 768
Query: 240 DLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
D ++ D+ +K G T I+YC + +C++ +A + G+ CA YHAG+ R
Sbjct: 769 D--KNSLKDISHSIKTRFKGQT-GIIYCHSKNSCEQTAAIVQDSGVRCAYYHAGMEPDER 825
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
++ W S + QV+ ATVAFGMGID+ DVR V H+ +P+++E +YQE+GRAGRD S
Sbjct: 826 LAIQQQWQSDKIQVICATVAFGMGIDKPDVRFVYHYTVPRTLEGYYQETGRAGRDGKYSY 885
Query: 358 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKI 416
++YY D R ++ ++ K+++ + + + +K ++ Q++ YCE + CRR+ +
Sbjct: 886 CIMYYSFRDVRNIQSMIQKDKNLDRE-------NKEKHLTKLQQVMQYCENTTDCRRQLV 938
Query: 417 LESFGEQ 423
L F EQ
Sbjct: 939 LSYFNEQ 945
>gi|355625895|ref|ZP_09048451.1| ATP-dependent DNA helicase RecQ [Clostridium sp. 7_3_54FAA]
gi|354821122|gb|EHF05518.1| ATP-dependent DNA helicase RecQ [Clostridium sp. 7_3_54FAA]
Length = 618
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 241/396 (60%), Gaps = 10/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ +FR+ Q I ++L+GRD +MPTG GKS+C+Q+PAL GI LV+SPL
Sbjct: 5 QVLKQYFGYEEFREGQEGLIDSILAGRDTLGIMPTGAGKSLCFQVPALMMKGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +L+S+ T+ K G+ + +YV PE T F+
Sbjct: 65 ISLMQDQVSALNQAGIHAAYLNSSLTVNQYYKALSYAREGRYPI--IYVAPERLVTEEFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
IH+ + +V +DEAHC+S WG DFRPSY K+ + LP P+L A TATA +
Sbjct: 123 DF--AIHAE--IAMVVVDEAHCVSQWGQDFRPSYLKIMEFIDKLPKRPVLSAFTATATKE 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ DV++ L L+ P V+ + F+RPNL++ V+ D YA + + ++ + I+YCL
Sbjct: 179 VRDDVIDILRLREPNVVTTGFDRPNLWFSVQAPK---DRYATMKNYIECHPGQSGIIYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T +E+S L+ G YHAGL+D R +D+I R+ ++VAT AFGMGID+ D
Sbjct: 236 TRKTVEEVSGRLAKEGFLVTRYHAGLSDAERKRNQEDFIYDRRSLMVATNAFGMGIDKSD 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK++E++YQE+GRAGRD P++ +L YG D +F + NQ + F+
Sbjct: 296 VRFVIHYNMPKNIESYYQEAGRAGRDGEPAECILLYGGQDVVTNQFFIDNNQDNDELDFA 355
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
RE ++ +M YC + C R IL FGE
Sbjct: 356 AREFVKERDRERLRRMTYYCFTNECLRDYILRYFGE 391
>gi|288803880|ref|ZP_06409305.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica D18]
gi|288333645|gb|EFC72095.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica D18]
Length = 727
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/405 (41%), Positives = 235/405 (58%), Gaps = 19/405 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQEAIIRNLLDGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDQVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENMEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRCAIETIGTAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEDCAEFKSSFNRPNLYYEVRPKKSDDDTNKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ ++VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDIIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y D ++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKKDLNKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ E+ + + + Y E S CRRK +L FGE C
Sbjct: 353 EGKPVAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEDYPKC 395
>gi|300728338|ref|ZP_07061703.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
gi|299774403|gb|EFI71030.1| ATP-dependent DNA helicase RecQ [Prevotella bryantii B14]
Length = 726
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 234/401 (58%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG +F+ Q I+ VL G D F LMPTGGGKS+CYQ+P+L PG +V+S
Sbjct: 7 LIDALKRYFGFDKFKGDQEAIIRNVLDGNDTFVLMPTGGGKSLCYQLPSLIMPGTAIVIS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E +L+S+ ++ D+ +GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGMSEGDGVAHYLNSSLNKSAVEQVKSDIRAGKT--KLLYVAPESLT 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ A+DEAHCIS WGHDFRP YR++ + + + + P++ALTAT
Sbjct: 125 KEDNVEFLKTVK----ISFYAVDEAHCISEWGHDFRPEYRRIRPIISQIGNAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ SL + + KSSFNRPNL+YEVR K D + +K + I
Sbjct: 181 ATDKVRTDIKRSLGIADAHEFKSSFNRPNLYYEVRPK--TKDVDKQIIMFIKQHPGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+ L A I AAYHAGL+ RS DD++ V+VAT+AFGMGI
Sbjct: 239 IYCLARKKVEELAEILKANDIKAAAYHAGLDSSTRSKTQDDFLMENIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GR GRD K + +Y D +++E K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRVGRDGGEGKCIAFYAKKDLKKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 351 EGKPVAEQDIGRQL--LQETAAYAESSVCRRKMLLHYFGEE 389
>gi|333378586|ref|ZP_08470317.1| ATP-dependent DNA helicase RecQ [Dysgonomonas mossii DSM 22836]
gi|332883562|gb|EGK03845.1| ATP-dependent DNA helicase RecQ [Dysgonomonas mossii DSM 22836]
Length = 731
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 236/398 (59%), Gaps = 23/398 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ HFG F+ Q IQ +L G+D F LMPTGGGKS+CYQ+PAL G +++SPLIA
Sbjct: 12 LKKHFGFDNFKGNQKAIIQNLLDGKDTFVLMPTGGGKSLCYQLPALLMEGTAVIISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E G+A F++S+ ++ D+ SGK +LLYV PE
Sbjct: 72 LMKNQVDAMRNFSEEDGVA-HFMNSSLNKAAIEQVKGDILSGKT--KLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L++I ++ AIDEAHCIS WGHDFRP YR++ + N + PI+ALTATA P
Sbjct: 129 NIDFLRQIK----ISFYAIDEAHCISEWGHDFRPEYRRIRPIVNEIGKHPIIALTATATP 184
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
KVQ D+ ++L + V KSSFNR NL+YEVR K D D+ +K+ G I+YC
Sbjct: 185 KVQMDIQKNLGMVEADVFKSSFNRENLYYEVRSK--TDKVDKDIIKYIKSQGTKSGIIYC 242
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E + L I+ YHAGL+ RS+ D ++ + V+VAT+AFGMGID+
Sbjct: 243 LSRKKVEEFAEILQTNNINALPYHAGLDPSTRSANQDAFLMEKVNVIVATIAFGMGIDKP 302
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H+++PKS+E +YQE+GRAGRD + + +Y D +++E K Q
Sbjct: 303 DVRYVIHYDMPKSLEGYYQETGRAGRDGGEGRCIAFYSFKDLQKLE--------KFMQGK 354
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ K + + Y E + CR+K +L FGE+
Sbjct: 355 PVAEQEIGKQL--LLETAAYAETALCRKKVLLHYFGEE 390
>gi|222086544|ref|YP_002545078.1| ATP-dependent DNA helicase RecQ [Agrobacterium radiobacter K84]
gi|221723992|gb|ACM27148.1| ATP-dependent DNA helicase RecQ [Agrobacterium radiobacter K84]
Length = 626
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 241/407 (59%), Gaps = 24/407 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A + +L+ +G++ FR KQ ++ V++G D L PTG GKS+C+QIPAL + GI +VV
Sbjct: 26 APLDVLKRVYGYSAFRGKQQQVVEHVVAGGDAVVLFPTGAGKSLCFQIPALCRDGIGIVV 85
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM +QV +K+ GI L+S+ + + + IY + SG +L +LYVTPE T
Sbjct: 86 SPLIALMRDQVEAMKQLGIRAAALNSSLSREEASDIYRAVSSG--TLDMLYVTPERVMTD 143
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
GF +++ +R + L AIDEAHC+S WGHDFRP YR L L P VP +ALTATA
Sbjct: 144 GF----QQMIARAKIALFAIDEAHCVSQWGHDFRPEYRDLGKLAELFPKVPRIALTATAD 199
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P + D++E L L + V +SF+RPN+ YE+ +D L L + IVY
Sbjct: 200 PHTRDDIIERLGLDDAKVFTTSFDRPNIAYEIVERD---QPRQQLLRFLDGHRGDSGIVY 256
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R ++ + +L+ G+ AYHAG++ R + D ++ +VATVAFGMGID+
Sbjct: 257 CLSRAKVEDTAEWLNGQGVRALAYHAGMDRSVRDANQDAFLKEEDLCLVATVAFGMGIDK 316
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKN 381
+VR V H ++P S+EA+YQE+GRAGRD LPS+ + YGM D R RM ++
Sbjct: 317 PNVRYVAHLDLPGSIEAYYQETGRAGRDGLPSEVWMAYGMADVIQRGRM-----IDEGNA 371
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE-QVLGC 427
+ ER+ + ++ CE +GCRR+ IL FGE GC
Sbjct: 372 ADEIKRVERAK------LNALLAVCETAGCRRQAILAHFGEGHAGGC 412
>gi|326803569|ref|YP_004321387.1| ATP-dependent DNA helicase RecQ [Aerococcus urinae
ACS-120-V-Col10a]
gi|326650946|gb|AEA01129.1| ATP-dependent DNA helicase RecQ [Aerococcus urinae
ACS-120-V-Col10a]
Length = 596
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 159/395 (40%), Positives = 246/395 (62%), Gaps = 25/395 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L +FG+ FR Q + I+++L+GRD ++PTGGGKS+CYQ+PAL PGI LV+SPLI+
Sbjct: 7 LEKYFGYKTFRPGQKELIESILAGRDSLGILPTGGGKSICYQLPALILPGITLVISPLIS 66
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L E GI +L+S+Q+ + + + + SG+ ++L+YV+PE + F+
Sbjct: 67 LMKDQVDSLNEHGIHSVYLNSSQSSEDYFAVLDRIHSGQ--VKLIYVSPERLKSESFLQL 124
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPKVQ 208
+ L+ +AIDEAHC+S WGHDFR SYR++++ + L P++ A TATA +VQ
Sbjct: 125 ANDLP----LDQIAIDEAHCVSQWGHDFRASYREIANFIDQLSHRPVVSAFTATATNRVQ 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L L+NP VL +SF+RPNL +EV + DL + + AI+Y R
Sbjct: 181 QDIIHQLALENPYVLINSFDRPNLTFEVMEPESKKKTVIDLI-----DKEEAAIIYASSR 235
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
T D LS +L G+ +AYHAG++ R + +D+I R ++VAT AFGMGID+ DVR
Sbjct: 236 KTVDRLSEWLRDQGLPVSAYHAGMSPADRMASQNDFIYERTNIIVATNAFGMGIDKPDVR 295
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+N+P ++E++YQE+GRAGRD LP++++L Y D +F++S++ S+
Sbjct: 296 QVIHYNLPTNLESYYQEAGRAGRDGLPARAILLYSPKDILTAKFLISQSNDPTSE----- 350
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ M++Y S C R+ IL FG++
Sbjct: 351 --------GRLNDMINYATTSSCLRQHILAYFGQE 377
>gi|227540043|ref|ZP_03970092.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33300]
gi|227240118|gb|EEI90133.1| ATP-dependent helicase RecQ [Sphingobacterium spiritivorum ATCC
33300]
Length = 729
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/411 (41%), Positives = 243/411 (59%), Gaps = 25/411 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+++L L+ FG F+ Q I VL+ +D F +MPTGGGKS+CYQ+PAL G +
Sbjct: 4 EKSLFDNLQDFFGFDTFKGDQEAIITNVLNKKDTFVIMPTGGGKSICYQLPALMSQGTAI 63
Query: 83 VVSPLIALMENQVIGLKEKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
V+SPLIALM+NQV L+ G FL+S+ TK+ +D+ GK +LLYV PE
Sbjct: 64 VISPLIALMKNQVDQLRAFGGTDSIAHFLNSSLNKGEITKVKQDVTQGKT--KLLYVAPE 121
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILA 198
+ + L+ I ++ VA+DEAHCIS WGHDFRP YRK+ + N + ++PI+A
Sbjct: 122 SLSKEENIEFLRHI----TVSFVAVDEAHCISEWGHDFRPEYRKIRQVINGIGENIPIIA 177
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA PKVQ D+ ++L + + + KSSFNR NL+YEVR K + ++ +K N
Sbjct: 178 LTATATPKVQSDIRKNLQMTDATLFKSSFNRTNLYYEVRTKK---NVVKEIVRFIKNNSG 234
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R +E++ L+ GI YHAGL+ K R+ D ++ +V+VAT+AF
Sbjct: 235 KTGIVYCLSRKKVEEIAEVLNINGIKALPYHAGLDAKTRADTQDKFLMEDVEVIVATIAF 294
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H +IPKSME +YQE+GRAGRD + +Y D ++ +
Sbjct: 295 GMGIDKPDVRYVIHHDIPKSMEGYYQETGRAGRDGGEGVCVTFYSEKDVEKLTKFMK--- 351
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV--LGC 427
+ S RE ++ +++DY E + CRRK+IL FGE GC
Sbjct: 352 ---DKPVSEREIGTQI----LKEVIDYSESAVCRRKQILHYFGENFDEAGC 395
>gi|409401711|ref|ZP_11251398.1| ATP-dependent DNA helicase RecQ [Acidocella sp. MX-AZ02]
gi|409129597|gb|EKM99441.1| ATP-dependent DNA helicase RecQ [Acidocella sp. MX-AZ02]
Length = 609
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/395 (41%), Positives = 242/395 (61%), Gaps = 18/395 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL FG FR +Q + +Q V +G D LMPTGGGKS+CYQ+PAL + G+ +VVSPLI
Sbjct: 16 LLHRVFGLPGFRGQQEEIVQHVCAGGDALVLMPTGGGKSLCYQLPALCREGVGIVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV L++ G+ L+S+ + ++ DL +G+ L+LLY PE P F+
Sbjct: 76 ALMRDQVAALRQLGVPAAALNSSLIAPERAQVRSDLRAGR--LKLLYAAPERLLMPDFLE 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ + L+AIDEAHC+S WGHDFRP Y LS L P VP +ALTATA P+ +
Sbjct: 134 MMDGAR----IALIAIDEAHCVSQWGHDFRPEYLGLSQLAERFPGVPRMALTATADPQTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ + L L+ + SSF+RPN+ Y V K+ L + L+A+ IVYCL R
Sbjct: 190 QDIAQRLGLEEAPLFLSSFDRPNIRYAVLRKEA---PLRQLQTFLRAHEGESGIVYCLSR 246
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ-VVVATVAFGMGIDRKDV 327
+ ++ +A L+ GI YHAG+ + R++ D+++++ + V+VATVAFGMGID+ DV
Sbjct: 247 NSVEQTAAALNQHGIRALPYHAGMPAETRAANQDEFLTTEEGLVLVATVAFGMGIDKPDV 306
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++P S+EA+YQE+GRAGRD LP+++LL YGM D +L + + S + +
Sbjct: 307 RFVVHLDLPSSLEAYYQETGRAGRDGLPAETLLLYGMQD-----LVLRRGMIEQSNAPAE 361
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ ++ + ++ CE CRR+ IL FGE
Sbjct: 362 IKQVERRKLDS---LLGVCETITCRRQAILAHFGE 393
>gi|94312259|ref|YP_585469.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
gi|93356111|gb|ABF10200.1| ATP-dependent DNA helicase [Cupriavidus metallidurans CH34]
Length = 630
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 171/411 (41%), Positives = 243/411 (59%), Gaps = 27/411 (6%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVL 82
+ +L+ FG+ FR +Q + I V G DC LMPTGGGKS+CYQIPAL A G+ +
Sbjct: 20 LAILKEVFGYHAFRGRQGEIIDHVAEGGDCLVLMPTGGGKSLCYQIPALLRQQAGHGVGI 79
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L E G+ L+ST + + + DL +G+ L +LYV PE
Sbjct: 80 VVSPLIALMQDQVAALTEAGVRAAVLNSTLSSSEASAVERDLLAGR--LDILYVAPERLM 137
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L++ + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTAT
Sbjct: 138 TPRFLDLLERTR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPRVPRIALTAT 193
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------N 256
A +++++E L L V SSF+RPN+ Y + K D+A L + +KA
Sbjct: 194 ADALTRQEIVERLALDEASVFISSFDRPNIRYRIIEK---DNARQQLLAFIKAEHMNATG 250
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G IVYCL R ++ +A+LS+ GI+ YHAG++ + R + + V+VAT+
Sbjct: 251 GHDSGIVYCLSRKKVEDTAAWLSSHGINALGYHAGMDSQIRQTHQARFREEEGIVMVATI 310
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + + ++ +
Sbjct: 311 AFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDE 370
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+++ E + S S ++ CE +GCRR +IL F E C
Sbjct: 371 SEAD--------EAHKRVSSSKLDALLGLCETAGCRRVRILAYFDETAEPC 413
>gi|323499630|ref|ZP_08104598.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
gi|323315231|gb|EGA68274.1| ATP-dependent DNA helicase RecQ [Vibrio sinaloensis DSM 21326]
Length = 611
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 250/415 (60%), Gaps = 21/415 (5%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
M +T + +P H +++++ + FG+ +FRD Q + I++ + G+D +MPTGGGKS
Sbjct: 1 MTATLLAESTEPTHTPQSVLQEV---FGYQEFRDGQQEVIESAVRGQDSLVIMPTGGGKS 57
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+CYQIPAL + G+ LV+SPLI+LM++QV LK G+A E ++ST +Y ++SG
Sbjct: 58 LCYQIPALVRNGLTLVISPLISLMKDQVDQLKANGVAAECVNSTMPRDELISVYNRMNSG 117
Query: 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187
+++L+YV+PE F+ +L+++ L+++A+DEAHCIS WGHDFRP Y L L
Sbjct: 118 --AIKLIYVSPERVLMRDFIERLEQLP----LSMIAVDEAHCISQWGHDFRPEYASLGQL 171
Query: 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA 247
+ Y P VP++ALTATA +KD+M+ L LQ+P SF+RPN+ Y + K +
Sbjct: 172 KQYFPHVPVMALTATADDATRKDIMQRLQLQDPHSYLGSFDRPNIRYTLIEKH---KPIS 228
Query: 248 DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307
+ L+ C I+YC R + ++ L G+ A+YHAGL+ R+ V + +
Sbjct: 229 QVVRFLEGQRGQCGIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLDADERAYVQEAFQRD 288
Query: 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y D
Sbjct: 289 DIQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADI 348
Query: 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ +L + + + + M + E CRR+ +L FGE
Sbjct: 349 SWLRRMLDEKDEGPQKQVEAHK---------LNAMSAFAEAQTCRRQVLLNYFGE 394
>gi|194291033|ref|YP_002006940.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
gi|193224868|emb|CAQ70879.1| ATP-dependent DNA helicase [Cupriavidus taiwanensis LMG 19424]
Length = 615
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 240/404 (59%), Gaps = 27/404 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG+ FR +Q + I V +G DC LMPTGGGKS+CYQIPAL A G+ +VVSPLIA
Sbjct: 12 FGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L E G+ L+ST T + + DL +G+ + +LYV PE TP F+
Sbjct: 72 LMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGR--IEILYVAPERLMTPRFLDL 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L++ + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTATA +
Sbjct: 130 LERTR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPYVPRIALTATADALTRD 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC------AIV 263
+++E L L + + SSF+RPN+ Y + K D+A L + +KA IV
Sbjct: 186 EIVERLALHDARIFISSFDRPNIRYRIVEK---DNARQQLLAFIKAEHTAADGTHDSGIV 242
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R ++ + +LS GI+ AYHAG++ + R + V+VAT+AFGMGID
Sbjct: 243 YCLSRKKVEDTAQWLSGQGINALAYHAGMDAQVRQHHQARFREEEGLVMVATIAFGMGID 302
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + + ++ ++S+ +
Sbjct: 303 KPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMI--DESEADE 360
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+F + S S ++ CE +GCRR++IL F E C
Sbjct: 361 AF------KRVSSSKLDALLGLCETAGCRRQRILAYFNEASEPC 398
>gi|303236792|ref|ZP_07323371.1| ATP-dependent DNA helicase RecQ [Prevotella disiens FB035-09AN]
gi|302482960|gb|EFL45976.1| ATP-dependent DNA helicase RecQ [Prevotella disiens FB035-09AN]
Length = 750
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 237/406 (58%), Gaps = 25/406 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ FG +F+ Q I+ VL+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 30 LTEKLKHFFGFDKFKGAQEAIIRNVLAGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVIS 89
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + E G+A SS + ++ ++ D+ SGK +LLYV PE
Sbjct: 90 PLIALMKNQVDVINGISAEDGVAHYLNSSLKKTEI-DQVKVDIHSGKT--KLLYVAPESL 146
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ + + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTA
Sbjct: 147 NKEDSIEFFRTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRQAVDQIGKAPIIALTA 202
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA KV+ D+++SL ++ KSSFNR NL+YEVR K +D + +K N
Sbjct: 203 TATDKVRSDIVKSLGIEGCSEFKSSFNRANLYYEVRPKKNEEDTNRQIIKFIKQNQGKSG 262
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+A L A I YHAGL+ + RS DD++ V+VAT+AFGMG
Sbjct: 263 IIYCLSRKKVEELAAVLQANEIKAEPYHAGLDSETRSKTQDDFLMENIDVIVATIAFGMG 322
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H++IPKS+E +YQE+GRAGRD K +++Y SKN K
Sbjct: 323 IDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGKCIVFY------------SKNDLKK 370
Query: 382 SQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQVL 425
+ F + S++ I + Y E S CRRK +L FGE+ L
Sbjct: 371 LEKFMEGKPVSEQDIGRQLLQETETYAESSVCRRKLLLHYFGEEYL 416
>gi|46107336|ref|XP_380727.1| hypothetical protein FG00551.1 [Gibberella zeae PH-1]
Length = 1672
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 242/404 (59%), Gaps = 17/404 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 822 RMLKDRFRMKGFRCNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTRGVTIV 881
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ + P L LLYVTPE+
Sbjct: 882 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAEYKRQVMSAFNERSPEHFLELLYVTPEMV 941
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + L+ +H +G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 942 SKNANFNNGLQTLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVRQKYPGVPVMALT 1001
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + + SFNRPNL+YEVR K + + S++++N +
Sbjct: 1002 ATATKNVIVDIRHNLGMDDCQTFSQSFNRPNLYYEVRPKSTGEKTIESIASLIQSNYANK 1061
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R + ++++ LS GI+ YHAG + + + V + W + +VVVAT+AFG
Sbjct: 1062 SGIVYTISRKSAEKVAESLSDSGITARHYHAGCDPQEKVDVQNAWQRGQVKVVVATIAFG 1121
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H IPKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1122 MGIDKPDVRFVIHHGIPKSLEGYYQETGRAGRDGNPSDCILFYGKADIRVLKKLIADGDG 1181
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ Q ++ +S +++ +C+ S CRR +IL FGE
Sbjct: 1182 SHEQ--------KERQMSMLNRVTAFCDNKSDCRRTEILRYFGE 1217
>gi|385786868|ref|YP_005817977.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
gi|310766140|gb|ADP11090.1| ATP-dependent DNA helicase RecQ [Erwinia sp. Ejp617]
Length = 610
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 239/401 (59%), Gaps = 19/401 (4%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 9 NEALAGQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+A L+STQ + + + SG ++RLLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSG--TVRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTA
Sbjct: 127 MMDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ L L +PL+ SSF+RPN+ Y + K L ++ C
Sbjct: 183 TADETTRNDIARLLRLNDPLIQISSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ + K
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCMEEKT 356
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 357 QGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|408399479|gb|EKJ78580.1| hypothetical protein FPSE_01246 [Fusarium pseudograminearum CS3096]
Length = 1673
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 242/404 (59%), Gaps = 17/404 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 823 RMLKDRFRMKGFRCNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTRGVTIV 882
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ + P L LLYVTPE+
Sbjct: 883 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAEYKRQVMSAFNERSPEHFLELLYVTPEMV 942
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + L+ +H +G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 943 SKNANFNNGLQTLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVRQKYPGVPVMALT 1002
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + + SFNRPNL+YEVR K + + S++++N +
Sbjct: 1003 ATATKNVIVDIRHNLGMDDCQTFSQSFNRPNLYYEVRPKSTGEKTIESIASLIQSNYANK 1062
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R + ++++ LS GI+ YHAG + + + V + W + +VVVAT+AFG
Sbjct: 1063 SGIVYTISRKSAEKVAESLSDSGITARHYHAGCDPQEKVDVQNAWQRGQVKVVVATIAFG 1122
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H IPKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1123 MGIDKPDVRFVIHHGIPKSLEGYYQETGRAGRDGNPSDCILFYGKADIRVLKKLIADGDG 1182
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ Q ++ +S +++ +C+ S CRR +IL FGE
Sbjct: 1183 SHEQ--------KERQMSMLNRVTAFCDNKSDCRRTEILRYFGE 1218
>gi|148226526|ref|NP_001089858.1| RecQ protein-like (DNA helicase Q1-like) [Xenopus laevis]
gi|80476410|gb|AAI08556.1| MGC131022 protein [Xenopus laevis]
Length = 652
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 167/415 (40%), Positives = 242/415 (58%), Gaps = 19/415 (4%)
Query: 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71
++ +N+ + + + L F FR QL+ I A +SGRD F +MPTGGGKS+CYQ
Sbjct: 67 AENWRNEDFLWSQKIRRALSDSFQLQTFRSLQLETINATMSGRDVFLIMPTGGGKSLCYQ 126
Query: 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131
+PAL G LV+ PLI+LME+Q++ L G++ L+++ + + ++ ++ + K L
Sbjct: 127 LPALCSDGFTLVICPLISLMEDQLMVLNRLGVSATSLNASSSKEHVKWVHGEMMNKKSQL 186
Query: 132 RLLYVTPELTA-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
+LLYVTPE A + FMS+L+K + GLL VA+DE HC S WGHDFRP Y+ L L+
Sbjct: 187 KLLYVTPEKVAKSKVFMSRLEKAYQGGLLARVAVDEVHCCSQWGHDFRPDYKTLGILKRQ 246
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADL 249
P+ P++ LTATA V KD + LC+Q PL +SFNRPNLFYEVR K +D AD+
Sbjct: 247 FPNSPLIGLTATATSHVLKDAQKILCVQKPLTFTASFNRPNLFYEVRLKPSSSEDFIADI 306
Query: 250 CSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308
++ + I+YC + ++++ L GI AYHA + + +S V W ++
Sbjct: 307 TKLINSRYKGQSGIIYCFSQKDSEQVTMSLQKLGIRAGAYHANMEPRDKSKVHTKWTANE 366
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368
Q+VVATVAFGMGID+ DVR V H ++ KSME +YQESGRAGRD + +LYYG D
Sbjct: 367 IQIVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIF 426
Query: 369 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
R+ ++ + + +MV Y + + CRR I + F E
Sbjct: 427 RISSMVVMENVGQQKLY---------------EMVKYSQNLNRCRRVLIAQHFDE 466
>gi|428173190|gb|EKX42094.1| BLM RecQ DNA helicase family member, partial [Guillardia theta
CCMP2712]
Length = 412
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/405 (41%), Positives = 245/405 (60%), Gaps = 19/405 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L K+ + F + FR Q + I +LSG DCF LMPTGGGKS+CYQ+PAL PG+ +V
Sbjct: 7 EKLRKINKHVFRNPSFRKHQEEIINTILSGHDCFVLMPTGGGKSLCYQLPALMSPGVTIV 66
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL--RLLYVTPELT 141
+SPL++LM +QV L I +S+ M ++Y L K + +L+Y+TPE
Sbjct: 67 ISPLVSLMHDQVYNLNLLRIGAYCISANTPMSELEEMYSCLRGVKEGINCQLIYITPEKF 126
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
A + +++++ G L+ + IDEAHC+S WGHDFRP Y+ L +L++ LP V I+ALT
Sbjct: 127 AHSQRLQNEMQRSFQNGKLSRIIIDEAHCVSEWGHDFRPDYKMLGALKSKLPGVQIMALT 186
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GD 258
ATA P+V++D+ L + SFNRPNL YEVR K+ A ++ + +K N G+
Sbjct: 187 ATATPRVRRDIRNILQINEAYTFMQSFNRPNLRYEVRKKEKKKSA-ENIATFIKENYPGE 245
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
T I+YCL + C+E++A + I YHAGL+D+ R D W + + V+VAT+AF
Sbjct: 246 T-GIIYCLSKNRCEEMAAKMQEFKIKALPYHAGLDDQTRKFNQDQWSNDKTHVIVATIAF 304
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V H ++PKSME +YQESGRAGRD S +LYY D+ ++
Sbjct: 305 GMGINKPDVRFVIHESLPKSMEGYYQESGRAGRDGKISHCILYYSYSDK-----LVHDKM 359
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+++ F +E ++ ++MV+YCE CRR+ L FGE
Sbjct: 360 AQD--DFDKKENVR----NNLNKMVEYCETQFTCRRQLQLHYFGE 398
>gi|386826289|ref|ZP_10113396.1| ATP-dependent DNA helicase RecQ [Beggiatoa alba B18LD]
gi|386427173|gb|EIJ41001.1| ATP-dependent DNA helicase RecQ [Beggiatoa alba B18LD]
Length = 733
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/399 (42%), Positives = 241/399 (60%), Gaps = 19/399 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FR Q IQ V++G D LMPTGGGKS+CYQIPAL + G+ +V+SPLI
Sbjct: 9 ILRRVFGYEHFRGHQETIIQHVMAGGDALVLMPTGGGKSLCYQIPALLRSGVGVVISPLI 68
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L + GI FL+S+Q +I + L +L LLYV PE P F+
Sbjct: 69 ALMQDQVDALLQLGIRAAFLNSSQDSAQTRQIVQQLRQN--ALDLLYVAPERLNNPRFLE 126
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + L L AIDEAHC+S WGHDFRP Y +LS L P +P +ALTATA +
Sbjct: 127 FLDSLP----LALFAIDEAHCVSQWGHDFRPDYARLSILHERFPHIPRIALTATADKPTR 182
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCL 266
++++ L L+N V + F+RPN+ Y + K A L S L A GD IVYCL
Sbjct: 183 REIISRLGLENAHVFVTGFDRPNIRYRITQKR--PPARQQLLSFLNAEHRGD-AGIVYCL 239
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ +L+ G + YHAGL+++ R + ++ V+VAT+AFGMGID+ +
Sbjct: 240 SRKKVEEVAEFLTVNGWTALPYHAGLSNELRQQHQNRFLREEGIVIVATIAFGMGIDKPN 299
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++PKS+EA+YQE+GRAGRD LP+ + L YG++D IL + NS++
Sbjct: 300 VRFVAHLDLPKSLEAYYQETGRAGRDGLPANAWLAYGLED-----VILLRKLLSNSEADE 354
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
+R ++ + ++ YCE + CRR+ +L FG+ ++
Sbjct: 355 QHKRLEQQKL---EALLGYCETTQCRRQVLLAYFGDDLV 390
>gi|387793516|ref|YP_006258581.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
gi|379656349|gb|AFD09405.1| ATP-dependent DNA helicase RecQ [Solitalea canadensis DSM 3403]
Length = 705
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 247/397 (62%), Gaps = 26/397 (6%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +FG+ +FR Q + IQ++L +D LMPTGGGKS+C+Q+PAL G+ +V+SPLI
Sbjct: 8 VLKEYFGYDEFRPLQRNIIQSILDKKDTLVLMPTGGGKSICFQVPALLLDGLCVVISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ GI +L+S+Q+ + + + ED +G +++LLY++PE
Sbjct: 68 SLMKDQVDALRINGIGAAYLNSSQSFEEEEVVIEDCING--NIKLLYLSPE--------- 116
Query: 149 KLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
KLK + R + L+AIDEAHCISSWGHDFRP Y +LS L+ DVPI+ALTATA
Sbjct: 117 KLKSSIPMLGRFNIQLLAIDEAHCISSWGHDFRPEYTQLSILKERFSDVPIVALTATADR 176
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+KD++ L L P +SF+RPNL EV+ ++ + + + I+YC
Sbjct: 177 VTRKDIIRQLNLHKPATFVASFDRPNLNLEVKTGIKTRQKDQEIVQFIHSKPNQSGIIYC 236
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T +EL+ L ++ AAYHAG++ R+ +D+I+ R QVV ATVAFGMGID+
Sbjct: 237 LSRKTTEELAEKLREHQVNAAAYHAGMSADDRNETQEDFINDRVQVVCATVAFGMGIDKS 296
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK++E +YQE GRAGRD L S+++LYY + D +L ++ SQ
Sbjct: 297 NVRWVIHYNLPKNIEGYYQEIGRAGRDGLESETILYYNLVD-----IVLLTQFAEQSQQ- 350
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
RE + +K ++ + E CRRK ++ FGE
Sbjct: 351 --RELNLEK----LKRIQQFAEADICRRKILINYFGE 381
>gi|408822198|ref|ZP_11207088.1| ATP-dependent DNA helicase [Pseudomonas geniculata N1]
Length = 601
Score = 315 bits (808), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/406 (41%), Positives = 242/406 (59%), Gaps = 23/406 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
++P H+ LL+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL
Sbjct: 3 SRPAHD------LLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALL 56
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +V+SPLIALM++QV L++ G+ EFL+ST + ++ +L +G+ L +LYV
Sbjct: 57 RDGCGIVISPLIALMQDQVEALRQLGVRAEFLNSTLDAETAGRVERELLAGE--LDMLYV 114
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE T F+S L SR + L AIDEAHC+S WGHDFRP YR+L+ L P +P
Sbjct: 115 APERLLTGRFLSLL----SRSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPR 170
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA P Q+++ E L LQ SSF+RPN+ Y V KD +A L L+ +
Sbjct: 171 IALTATADPPTQREIAERLDLQEARHFVSSFDRPNIRYTVVQKD---NARKQLTDFLRGH 227
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYC+ R +E + +L G + YHAGL + R++ ++ V+ AT+
Sbjct: 228 RGEAGIVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATI 287
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD +++ L YG+ D +L K
Sbjct: 288 AFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLK 342
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S++ R++ + + ++ YCE CRR+ +L FGE
Sbjct: 343 QMIEQSEAGEERKQLERGKL---DHLLGYCESMQCRRQVLLAGFGE 385
>gi|398381775|ref|ZP_10539881.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. AP16]
gi|397718856|gb|EJK79437.1| ATP-dependent DNA helicase RecQ [Rhizobium sp. AP16]
Length = 626
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/407 (41%), Positives = 240/407 (58%), Gaps = 24/407 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A + +L+ +G++ FR KQ ++ V+ G D L PTG GKS+C+QIPAL + GI +VV
Sbjct: 26 APLDILKRVYGYSAFRGKQQQVVEHVVGGGDAVVLFPTGAGKSLCFQIPALCRDGIGIVV 85
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM +QV +K+ GI L+S+ + + + IY + SG +L +LYVTPE T
Sbjct: 86 SPLIALMRDQVEAMKQLGIRAAALNSSLSREEASDIYRAVSSG--TLDMLYVTPERIMTD 143
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
GF +++ +R + L AIDEAHC+S WGHDFRP YR L L P VP +ALTATA
Sbjct: 144 GF----QQMIARAKIALFAIDEAHCVSQWGHDFRPEYRDLGKLAELFPKVPRIALTATAD 199
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
P + D++E L L + V +SF+RPN+ YE+ +D L L + IVY
Sbjct: 200 PHTRDDIIERLGLDDAKVFTTSFDRPNIAYEIVERD---QPRQQLLRFLDGHRGDSGIVY 256
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R ++ + +L+ G+ AYHAG++ R + D ++ +VATVAFGMGID+
Sbjct: 257 CLSRAKVEDTAEWLNGQGVRALAYHAGMDRSVRDANQDAFLKEEDLCLVATVAFGMGIDK 316
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKN 381
+VR V H ++P S+EA+YQE+GRAGRD LPS+ + YGM D R RM ++
Sbjct: 317 PNVRYVAHLDLPGSIEAYYQETGRAGRDGLPSEVWMAYGMADVIQRGRM-----IDEGNA 371
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE-QVLGC 427
+ ER+ + ++ CE +GCRR+ IL FGE GC
Sbjct: 372 ADEIKRVERAK------LNALLAICETAGCRRQAILAHFGEGHAGGC 412
>gi|209965714|ref|YP_002298629.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
gi|209959180|gb|ACI99816.1| ATP-dependent DNA helicase RecQ [Rhodospirillum centenum SW]
Length = 610
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/395 (41%), Positives = 238/395 (60%), Gaps = 16/395 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +G+ FR Q ++ V++G D LMPTGGGKS+CYQIPAL +PG+ +VVSPLI
Sbjct: 16 VLRNVWGYPDFRGMQAAIVEQVIAGGDALVLMPTGGGKSLCYQIPALVRPGVGIVVSPLI 75
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV L++ G+ +L+ST + ++ + G L LLYV PE TP F+
Sbjct: 76 ALMRDQVDALRQLGVRAAYLNSTLDWREALEVERACERG--GLDLLYVAPERLVTPRFLD 133
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L+ R + L A+DEAHC+S WGHDFRP Y + S L PDVP +ALTATA + +
Sbjct: 134 LLE----RSRIALFALDEAHCVSQWGHDFRPEYLQCSILHERFPDVPRIALTATADAQTR 189
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++E L L V +SF+RPN+ Y V+ KD ++ L + +G+ IVYC+ R
Sbjct: 190 ADIVERLGLGGAEVFAASFDRPNITYRVQTKD--NERRQLLDFIRHRHGEDAGIVYCMSR 247
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++ +L GI YHAGL + R + D +I + V+VATVAFGMGID+ +VR
Sbjct: 248 GKVESVAQWLREQGIDALPYHAGLEAETRQANQDRFIKAEGVVMVATVAFGMGIDKPNVR 307
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H + P+S+EA+YQE+GRAGRD LP+++L+ YG D ++ Q + R
Sbjct: 308 FVVHMDPPRSLEAYYQETGRAGRDGLPAEALMLYGFQD------VVQLRQWVEASDAPAR 361
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ +++ ++ +CE + CRR+ IL FGE+
Sbjct: 362 HKRTER--QKLEALLGFCETARCRRQTILTYFGEE 394
>gi|319786295|ref|YP_004145770.1| ATP-dependent DNA helicase RecQ [Pseudoxanthomonas suwonensis 11-1]
gi|317464807|gb|ADV26539.1| ATP-dependent DNA helicase RecQ [Pseudoxanthomonas suwonensis 11-1]
Length = 623
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 239/396 (60%), Gaps = 17/396 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR FG+ FR +Q D I+ V +G D LMPTGGGKS+CYQ+PAL + G +VVSP
Sbjct: 22 LSVLRQVFGYDAFRGQQQDIIEHVAAGNDALVLMPTGGGKSLCYQVPALLREGTGIVVSP 81
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L + G+ L+ST + ++ +L G +L LLYV PE T F
Sbjct: 82 LIALMQDQVEALLQLGVRAACLNSTLDAEQARQVERELLDG--TLDLLYVAPERLLTGRF 139
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+S L+ R + L AIDEAHC+S WGHDFRP YR+L+ L PDVP LALTATA P
Sbjct: 140 LSLLE----RSRIALFAIDEAHCVSQWGHDFRPEYRELTVLHERWPDVPRLALTATADPP 195
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++++ E L L++ SSF+RPN+ Y V +KD + L L + IVYCL
Sbjct: 196 TRREIAERLALESARCFLSSFDRPNIRYAVAHKD---NPRRQLLDFLGGHRGESGIVYCL 252
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E + +L+ GI+ YHAGL R+ ++ V+ AT+AFGMGID+ D
Sbjct: 253 SRRKVEETAEFLAGQGIAALPYHAGLPSDVRAQNQRRFLREDGIVMCATIAFGMGIDKPD 312
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++PKS+E +YQE+GRAGRD P+++ + YG+ D +L + + ++
Sbjct: 313 VRFVAHLDLPKSIEGYYQETGRAGRDGEPAEAWMGYGLGD-----VVLLRQMIEQGEASG 367
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R+ ++ + Q++ YCE + CRR+ +L +FGE
Sbjct: 368 ERKALERRKL---DQLLGYCESAMCRRQALLAAFGE 400
>gi|397162702|ref|ZP_10486172.1| ATP-dependent DNA helicase RecQ [Enterobacter radicincitans DSM
16656]
gi|396095746|gb|EJI93286.1| ATP-dependent DNA helicase RecQ [Enterobacter radicincitans DSM
16656]
Length = 608
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 247/403 (61%), Gaps = 23/403 (5%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q D I VLSGRDC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQQDIIDTVLSGRDCLVVMPTGGGKSLCYQIPALVLQGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQFDVINGCRNGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L++ + L+A+DEAHCIS WGHDFRP Y L LR LP VP +ALTA
Sbjct: 127 MLDNFLDQLRQWNP----VLLAVDEAHCISQWGHDFRPEYAALGHLRQMLPSVPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA ++D+ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADDTTRRDIERLLGLNDPLIQVSSFDRPNIRYMLMEKFKPL-----DQLLRYVQEQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R ++ +A L + G S AAYHAGL+++ R+ V + + Q+VVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDTAARLQSRGFSAAAYHAGLDNELRARVQEQFQRDDLQIVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|259906892|ref|YP_002647248.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae Ep1/96]
gi|387869602|ref|YP_005800972.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
gi|224962514|emb|CAX53969.1| ATP-dependent DNA helicase [Erwinia pyrifoliae Ep1/96]
gi|283476685|emb|CAY72514.1| ATP-dependent DNA helicase RecQ [Erwinia pyrifoliae DSM 12163]
Length = 610
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/401 (42%), Positives = 239/401 (59%), Gaps = 19/401 (4%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 9 NEALAGQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+A L+STQ + + + SG ++RLLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSG--TVRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTA
Sbjct: 127 MMDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ L L +PL+ SSF+RPN+ Y + K L ++ C
Sbjct: 183 TADETTRNDIARLLQLNDPLIQISSFDRPNIRYTLVEKF---KPTEQLLRYVQDQRGKCG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFGMG
Sbjct: 240 IIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAHVQEAFQRDDLQIVVATVAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ + K
Sbjct: 300 INKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCLEEKT 356
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 357 QGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|429083282|ref|ZP_19146326.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
gi|426547898|emb|CCJ72367.1| ATP-dependent DNA helicase RecQ [Cronobacter condimenti 1330]
Length = 609
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 244/406 (60%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTVVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L + L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDNLTYWN----LTMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|1931649|gb|AAB65484.1| DNA helicase isolog; 74946-78841 [Arabidopsis thaliana]
Length = 665
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 243/401 (60%), Gaps = 15/401 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 120 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 179
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 180 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 239
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 240 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 299
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N +V + SFNRPNL+Y V + K L+D + +K N D C I+YCL R
Sbjct: 300 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLED----IDKFIKENHFDECGIIYCLSRM 355
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR
Sbjct: 356 DCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRF 415
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFS 386
V H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ +QS + ++
Sbjct: 416 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYN 475
Query: 387 TRERSSK---KSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
S + + + +MV YCE CRR L GE+
Sbjct: 476 RVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEK 516
>gi|261195180|ref|XP_002623994.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
gi|239587866|gb|EEQ70509.1| RecQ family helicase MusN [Ajellomyces dermatitidis SLH14081]
Length = 1562
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 238/404 (58%), Gaps = 18/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
LR F FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 685 LRHRFNLPGFRPNQLEAINATLSGKDVFVLMPTGGGKSLCYQLPSVIQSGKTKGVTVVIS 744
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LME+QV L++ I L+ + + K +IY L + ++LLYVTPE+
Sbjct: 745 PLLSLMEDQVAHLRDLKIQASVLNGDASKEEKMEIYGALRNANVEKLIQLLYVTPEMVNK 804
Query: 144 PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G + L +HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTAT
Sbjct: 805 NGALLDILSHLHSRCKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTKFPGIPLMALTAT 864
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A V+ DV+ +L + + V SFNRPNL YEVR K + A + +K +
Sbjct: 865 ATENVKVDVIHNLGMHDAEVFVQSFNRPNLIYEVRRKPKGTNVVASIAETIKGSYSGKAG 924
Query: 262 IVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +C+ ++ L I YHAGL R S+ DW + V+VAT+AFGM
Sbjct: 925 IIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRGKYNVIVATIAFGM 984
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 985 GIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGERSGCYLYYGFQDTASIRHMIDKGEG- 1043
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
S+ ++S + + +V +CE + CRR ++L F E+
Sbjct: 1044 -----SSEQKSRQHRM--LRHVVQFCENWTDCRRVQVLTYFNEK 1080
>gi|260770707|ref|ZP_05879637.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
gi|260614288|gb|EEX39477.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii CIP 102972]
Length = 611
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 160/394 (40%), Positives = 237/394 (60%), Gaps = 18/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FRD Q + I++ ++GRD +MPTGGGKS+CYQIPALA+ G+ +V+SPLI
Sbjct: 19 ILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISPLI 78
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK G+A E ++STQ+ + IY + SG+ L+LLYV+PE T F+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTQSREALMGIYNRMHSGQ--LKLLYVSPERVLTGEFIE 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P VPI+ALTATA +
Sbjct: 137 RLHNLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFPQVPIMALTATADDATR 192
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L +P V SF+RPN+ Y + K + + L C I+YC R
Sbjct: 193 SDILSRLNLTDPHVYLGSFDRPNIRYTLMEK---HKPVSQVIRYLDTQKGHCGIIYCGSR 249
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++ L I A YHAG++ R+ V + + Q+VVATVAFGMGI++ +VR
Sbjct: 250 KKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVR 309
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF+IP+++E++YQE+GRAGRD LP+++++ Y D + +L + + T
Sbjct: 310 FVVHFDIPRNIESYYQETGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSDGPQKQVETH 369
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + M ++ E CRR+ +L FGE
Sbjct: 370 K---------LTAMSNFAEAQTCRRQVLLNYFGE 394
>gi|421079860|ref|ZP_15540796.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
gi|401705347|gb|EJS95534.1| ATP-dependent helicase RecQ [Pectobacterium wasabiae CFBP 3304]
Length = 608
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 250/403 (62%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLHSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++SA L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDISARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|388455906|ref|ZP_10138201.1| ATP-dependent DNA helicase RecQ [Fluoribacter dumoffii Tex-KL]
Length = 607
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/404 (40%), Positives = 236/404 (58%), Gaps = 19/404 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+ + + +L+ +FG FR Q D I V+ G+D LMPTGGGKS+CYQIPA+ +P
Sbjct: 7 PVTRNKNSLAVLKEYFGFDSFRTPQEDIINEVIEGKDVLVLMPTGGGKSLCYQIPAIVRP 66
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G +VVSPLIALME+QV L+ +GI + +S+ + + K+ L + L LLY+ P
Sbjct: 67 GTGIVVSPLIALMEDQVTALRLQGIRAAYYNSSLSGEESKKVLMQLHHNE--LDLLYIAP 124
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E +P F+ +LK+ H + L AIDEAHCIS WGHDFRP Y L L+ + P++PI+A
Sbjct: 125 ERLMSPSFLERLKECH----IALFAIDEAHCISQWGHDFRPEYAALGVLKTHFPNIPIIA 180
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + ++D+++ L P +SFNRPN+ Y+V +K +A L L
Sbjct: 181 LTATADKQTRQDIIDKLHY-TPRKYIASFNRPNIHYKVVHKT---NAVKQLGQFLHTVER 236
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC RT + L+ L AYHAGL K R V + R +VVAT+AF
Sbjct: 237 QSGIIYCSTRTAVETLAQKLQEMDFKARAYHAGLPHKERREVQGLFRHDRIDIVVATIAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H+++PK++E +YQE+GRAGRD LP+++LL Y D R+ + N
Sbjct: 297 GMGIDKSNVRFVVHYDLPKNIEGYYQETGRAGRDGLPAQALLLYDAADSARLRSWIHNN- 355
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + I+ + M+ + E S CRR+ +L F E
Sbjct: 356 --------PLDEQRRVEINKLNHMLAFAEASHCRRQILLRYFDE 391
>gi|302345889|ref|YP_003814242.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica ATCC
25845]
gi|302148973|gb|ADK95235.1| ATP-dependent DNA helicase RecQ [Prevotella melaninogenica ATCC
25845]
Length = 727
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 169/405 (41%), Positives = 235/405 (58%), Gaps = 19/405 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQEAIIRNLLDGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGVAHYLNSSLKKAEIDQVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
M LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENMEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRCAIETIGTAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEDCAEFKSSFNRPNLYYEVRPKKSDDDTNKQIIKFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ ++VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILQANDIKAAPYHAGLDSETRSKTQDDFLMEELDIIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y D ++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICVVFYSKKDLNKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ E+ + + + Y E S CRRK +L FGE C
Sbjct: 353 EGKPVAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEDYPKC 395
>gi|239610645|gb|EEQ87632.1| RecQ family helicase MusN [Ajellomyces dermatitidis ER-3]
gi|327348921|gb|EGE77778.1| RecQ family helicase MusN [Ajellomyces dermatitidis ATCC 18188]
Length = 1562
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 238/404 (58%), Gaps = 18/404 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVVS 85
LR F FR QL+AI A LSG+D F LMPTGGGKS+CYQ+P++ + G + +V+S
Sbjct: 685 LRHRFNLPGFRPNQLEAINATLSGKDVFVLMPTGGGKSLCYQLPSVIQSGKTKGVTVVIS 744
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELTAT 143
PL++LME+QV L++ I L+ + + K +IY L + ++LLYVTPE+
Sbjct: 745 PLLSLMEDQVAHLRDLKIQASVLNGDASKEEKMEIYGALRNANVEKLIQLLYVTPEMVNK 804
Query: 144 PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G + L +HSR L + IDEAHC+S WGHDFRP Y++L + R P +P++ALTAT
Sbjct: 805 NGALLDILSHLHSRCKLARIVIDEAHCVSQWGHDFRPDYKELGNTRTKFPGIPLMALTAT 864
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCA 261
A V+ DV+ +L + + V SFNRPNL YEVR K + A + +K +
Sbjct: 865 ATENVKVDVIHNLGMHDAEVFVQSFNRPNLIYEVRRKPKGTNVVASIAETIKGSYSGKAG 924
Query: 262 IVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +C+ ++ L I YHAGL R S+ DW + V+VAT+AFGM
Sbjct: 925 IIYCLSRQSCERVAEQLRDTHKIKAVHYHAGLPSNDRISIQRDWQRGKYNVIVATIAFGM 984
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H ++PKS+E +YQE+GRAGRD S LYYG D + ++ K +
Sbjct: 985 GIDKPDVRFVIHHSMPKSLEGYYQETGRAGRDGERSGCYLYYGFQDTASIRHMIDKGEG- 1043
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
S+ ++S + + +V +CE + CRR ++L F E+
Sbjct: 1044 -----SSEQKSRQHRM--LRHVVQFCENWTDCRRVQVLTYFNEK 1080
>gi|238750693|ref|ZP_04612192.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
gi|238711083|gb|EEQ03302.1| ATP-dependent DNA helicase recQ [Yersinia rohdei ATCC 43380]
Length = 610
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTEGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 133 DQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L+NPL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAHVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|297739574|emb|CBI29756.3| unnamed protein product [Vitis vinifera]
Length = 1235
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 241/403 (59%), Gaps = 19/403 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 434 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQD 493
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I +LS++ + +I +L S K +LLY TPE A M L
Sbjct: 494 QIMHLLQANIPAAYLSASMEWNEQQEILRELSSCK--YKLLYATPEKVAKSDVLMRNLDN 551
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H+R LL+ + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 552 LHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 611
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + + LDD + ++ N D C I+YCL R
Sbjct: 612 QALGLVNCIIFRQSFNRPNLWYSVLPKTRKCLDD----IDKFIRENHFDECGIIYCLSRL 667
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 668 DCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 727
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ ++++ + S S +
Sbjct: 728 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQN 787
Query: 390 RSS--------KKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
RS+ + + + +MV YCE CRR L FGE+
Sbjct: 788 RSNMASSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEK 830
>gi|355336772|gb|AER57871.1| ATP-dependent DNA helicase RecQ family protein [Acytostelium
subglobosum]
Length = 1147
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/403 (41%), Positives = 253/403 (62%), Gaps = 14/403 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ + ++ R FG+ +R Q++ I A +SG D F LMPTGGGKS+CYQIPA+ G+ ++
Sbjct: 476 DEVERINRTVFGNRSWRKNQVEIINACMSGHDVFVLMPTGGGKSLCYQIPAMCNEGVTII 535
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPLI+L+++QV+ L+ L+ T + + T+IY DL P+L+LLY+TPE +
Sbjct: 536 ISPLISLIQDQVMLLQTLAYPAAALTGTTSSEDVTQIYRDLRQTPPTLKLLYLTPEKVVQ 595
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+P M + +++ GLL IDEAHC+S WGHDFRP+Y++L L+ P +PILALTAT
Sbjct: 596 SPAIMDLFRNLNNNGLLARAVIDEAHCVSQWGHDFRPNYKELKLLKTEFPSLPILALTAT 655
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTC 260
A +V+KDV+ +L ++NP+ K SFNRPNL Y V + K ++DD A+ + K
Sbjct: 656 ATERVKKDVIFNLHMKNPITFKQSFNRPNLQYAVVKKSKKIVDDI-AEFIN--KFYPGKS 712
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC+ R C +++ L G+ YHA + R + W R +++V+T+AFGM
Sbjct: 713 GIVYCISRNDCVTVASELRKKGLRANFYHANMEPDERQRTQESWTRDRIKIIVSTIAFGM 772
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GI++ DVR V H ++PKS+E +YQESGRAGRD S +LYY D+ R E +L KN +
Sbjct: 773 GINKPDVRFVIHHSLPKSLEGYYQESGRAGRDGNLSHCILYYSFGDKFRQE-VLIKNSTG 831
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
++ + S ++++ + +++V YCE CRRK L+ GE
Sbjct: 832 STHA------SIRENMENLNRIVGYCENPVDCRRKLQLQYLGE 868
>gi|238763624|ref|ZP_04624584.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
gi|238698102|gb|EEP90859.1| ATP-dependent DNA helicase recQ [Yersinia kristensenii ATCC 33638]
Length = 610
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 133 DQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L+NPL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLENPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|225448193|ref|XP_002265586.1| PREDICTED: ATP-dependent DNA helicase Q-like 4A-like [Vitis
vinifera]
Length = 1224
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 241/403 (59%), Gaps = 19/403 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 423 FGNHSFRPNQREVINATMSGYDVFVLMPTGGGKSLTYQLPALISPGITLVISPLVSLIQD 482
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I +LS++ + +I +L S K +LLY TPE A M L
Sbjct: 483 QIMHLLQANIPAAYLSASMEWNEQQEILRELSSCK--YKLLYATPEKVAKSDVLMRNLDN 540
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+H+R LL+ + IDEAHC+S WGHDFRP Y+ L L+ P+ P+LALTATA V++DV+
Sbjct: 541 LHARELLSRIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVV 600
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N ++ + SFNRPNL+Y V + + LDD + ++ N D C I+YCL R
Sbjct: 601 QALGLVNCIIFRQSFNRPNLWYSVLPKTRKCLDD----IDKFIRENHFDECGIIYCLSRL 656
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 657 DCEKVAERLQECGHKAAFYHGSMDPARRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 716
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H ++PKS+E ++QE GRAGRD S +LYY D R++ ++++ + S S +
Sbjct: 717 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMITQGVVEQSPLASGQN 776
Query: 390 RSS--------KKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
RS+ + + + +MV YCE CRR L FGE+
Sbjct: 777 RSNMASSGRILETNTENLLRMVSYCENDVDCRRLLQLVHFGEK 819
>gi|194366875|ref|YP_002029485.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
R551-3]
gi|194349679|gb|ACF52802.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
R551-3]
Length = 601
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 244/406 (60%), Gaps = 23/406 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
++P H+ LL+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL
Sbjct: 3 SRPAHD------LLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALL 56
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +V+SPLIALM++QV L++ G+ E+L+ST + ++ +L +G+ L +LYV
Sbjct: 57 RDGCGIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGE--LDMLYV 114
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE T F+S L SR + L AIDEAHC+S WGHDFRP YR+L+ L P++P
Sbjct: 115 APERLLTGRFLSLL----SRSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPEIPR 170
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA P Q+++ E L LQ SSF+RPN+ Y V KD +A L L+++
Sbjct: 171 IALTATADPPTQREIAERLDLQEARHFVSSFDRPNIRYTVVQKD---NARKQLGDFLRSH 227
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYC+ R +E + +L G + YHAGL + R++ ++ V+ AT+
Sbjct: 228 RSEAGIVYCMSRRKVEETAEFLCTQGFNALPYHAGLPSEVRANNQRRFLREDGIVMCATI 287
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD +++ L YG+ D +L K
Sbjct: 288 AFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLK 342
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S++ R++ + + ++ YCE CRR+ +L FGE
Sbjct: 343 QMIEQSEAGEERKQLERGKL---DHLLGYCESMQCRRQVLLAGFGE 385
>gi|421503610|ref|ZP_15950556.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina DLHK]
gi|400345437|gb|EJO93801.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina DLHK]
Length = 710
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 240/398 (60%), Gaps = 17/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ FG+ FR Q I+ V +G D LMPTGGGKS+CYQ+PAL + G+ +VVSP
Sbjct: 6 LRILKDVFGYDAFRGNQAAIIERVAAGGDALVLMPTGGGKSLCYQVPALMREGLAVVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A L+ST + + +I E + G+ +++LY+ PE P
Sbjct: 66 LIALMDDQVATLEELGVAAVALNSTLSADEQREIAERIRRGQ--IKMLYLAPERLVQPRM 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+S L+ + + L AIDEAHC+S WGHDFRP Y +L L P VP LALTATA +
Sbjct: 124 LSFLQGLD----IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRLALTATADKR 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++++++ L L N SSF+RPN+FY ++ KD L L A IVYCL
Sbjct: 180 TREEIVQRLHLDNAERFLSSFDRPNIFYRIQPKD---QPRKQLLGFLAARKGDAGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ +LS+ G YHAGL ++ R+ +++ ++VAT+AFGMGID+ +
Sbjct: 237 SRKKVEEVADFLSSQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR VCH ++PKS+EA+YQE+GRAGRD LP+ + + YG+ D I K NS+
Sbjct: 297 VRFVCHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQD-----VIFLKQMLANSEG-- 349
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER + M+ CE + CRR+ +L F E++
Sbjct: 350 -DERHKRIEQHKLDAMLALCEETRCRRQALLAYFDEEL 386
>gi|449548620|gb|EMD39586.1| hypothetical protein CERSUDRAFT_111898 [Ceriporiopsis subvermispora
B]
Length = 877
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 242/410 (59%), Gaps = 24/410 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP-GIVLVVSPLIALME 92
FGH +++ KQ ++A + G D F L PTG GKS+C+Q+PA+A+ G+ +VVSPL+ALM+
Sbjct: 62 FGHKEYKGKQKQIVEAAVQGADIFVLAPTGMGKSICFQVPAIAEQHGVTVVVSPLLALMK 121
Query: 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152
NQV L+ + L+S + + K +I DL SG P +RLLYV+PE TP +
Sbjct: 122 NQVAKLRRLHVPVVALTSETSHEEKQEIMRDLSSGSPEIRLLYVSPEKFCTPELKRLFET 181
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ ++G LN + +DEAHCIS WGHDFR YR+L S R+ P +PI+ALTATA P VQ D++
Sbjct: 182 LSTQGELNRLVVDEAHCISEWGHDFRAEYRRLGSFRDRYPTIPIMALTATATPIVQDDIV 241
Query: 213 ESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYAD---------LCSVLKANG-DTC 260
SL + +LK FNR NLFYEV+Y L +Y D + + + G +
Sbjct: 242 RSLKMAEDHMLKVVHPFNRSNLFYEVQY---LASSYQDAHMSEIHKYISRLHERRGRPSS 298
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW-ISSRKQ----VVVAT 315
I+YC R TCDELS +L G++ YH G+ L DW I + VV AT
Sbjct: 299 GIIYCRTRKTCDELSQFLRGKGLNARPYHRGIPPATLDRTLADWEIGGSDEGGVDVVCAT 358
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
VAFGMGID+ DVR + H+++PKS E +YQE+GRAGRD PSK +L+Y +D R+ ++S
Sbjct: 359 VAFGMGIDKADVRYIIHYDLPKSFEGYYQETGRAGRDGSPSKCILFYSREDVVRVRKLVS 418
Query: 376 KNQSKNSQSFST--RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
++ T S++++ + +++Y E CR I FGE
Sbjct: 419 GAHARRVVQVDTFGGPVPSQRAVDSLTALINYAENVHTCRHVTICRYFGE 468
>gi|408370738|ref|ZP_11168512.1| ATP-dependent DNA helicase recq [Galbibacter sp. ck-I2-15]
gi|407743730|gb|EKF55303.1| ATP-dependent DNA helicase recq [Galbibacter sp. ck-I2-15]
Length = 733
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 173/416 (41%), Positives = 245/416 (58%), Gaps = 31/416 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q I+++++ + F +MPTGGGKS+CYQ+PAL K G +V+SPLIA
Sbjct: 12 LKEYFGFSQFKGLQEKVIKSIVNDHNTFVIMPTGGGKSLCYQLPALVKEGTAIVISPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ KGIA SS +++ ++ ED+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSNKGIAHVLNSSLNKSEIR-QVKEDITSG--VTKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAA 204
++ + + ++ VA+DEAHCIS WGHDFRP YR + ++ L D+PI+ALTATA
Sbjct: 129 YIEFFRTVK----ISFVAVDEAHCISEWGHDFRPEYRNIRTIIQRLGDDIPIIALTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
KVQ+D++++L + V K+SFNRPNL+YEVR K + D+ +K N I+Y
Sbjct: 185 EKVQEDILKNLGIGKANVFKASFNRPNLYYEVRPK--TKNVDVDIIRFVKQNTGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K R+ D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKKVEELAQTLEVNGIKAVPYHAGLDAKTRAKHQDMFLMEDVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ---VLGCVASVTHRV 435
F + + +++ I MV Y E S RR IL FGE+ V G AS+ V
Sbjct: 351 FMSGKPVAEQEIGHALLQDMVAYAETSMSRRMYILHYFGEEFDPVTGEGASMDDNV 406
>gi|354557592|ref|ZP_08976850.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium metallireducens
DSM 15288]
gi|353550386|gb|EHC19823.1| ATP-dependent DNA helicase RecQ [Desulfitobacterium metallireducens
DSM 15288]
Length = 726
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 162/405 (40%), Positives = 243/405 (60%), Gaps = 28/405 (6%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E +K L +FG++QFR Q + I ++LSG+D +MPTG GKS+ YQIPAL G+ LV
Sbjct: 3 EKALKTLEHYFGYSQFRTGQKEVITSLLSGKDTVAIMPTGAGKSLAYQIPALLFDGVTLV 62
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
+SPLI+LM++QV L+E G+ +++S+ +M+ E G+ +LLY+ PE T
Sbjct: 63 ISPLISLMKDQVDALQEYGVPATYINSSLSMRETISHIEQTKRGE--FKLLYIAPERLET 120
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTAT 202
F++ L+ + ++ +AIDEAHC+S WGHDFRPSY ++ ++L P++ A TAT
Sbjct: 121 ESFLTLLETLE----ISFIAIDEAHCVSQWGHDFRPSYIRIGQFLHHLQVRPLVGAFTAT 176
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-----EVRYKDLLDDAYADLCSVLKANG 257
A +V++D++ L LQNP V + F+RPNL + E R LLD ++A+
Sbjct: 177 ATEEVKEDIINQLKLQNPQVFVTGFDRPNLTFSTLQGENRKTYLLD--------YVRAHA 228
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
D I+Y R D + +LS G YHAG++DK R +D++ + ++VAT A
Sbjct: 229 DESGIIYASTRKKVDAIQTFLSGKGFPVGKYHAGMSDKDRQKSQEDFLYDKTPIIVATNA 288
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ +VR V H+N+PK+MEA+YQE+GRAGRD P++ +L + D +L ++
Sbjct: 289 FGMGIDKSNVRYVIHYNMPKNMEAYYQEAGRAGRDGEPAECILLFSPQD-----VVLQRH 343
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + R + K + D MVDYC + C RK ILE FGE
Sbjct: 344 MIEQTTFQPERRENEHKKLQD---MVDYCHTTRCLRKTILEYFGE 385
>gi|410632491|ref|ZP_11343149.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
gi|410147917|dbj|GAC20016.1| ATP-dependent DNA helicase RecQ [Glaciecola arctica BSs20135]
Length = 594
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 158/400 (39%), Positives = 232/400 (58%), Gaps = 23/400 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FRD Q I VL +D LMPTGGGKS+CYQIPA+ PG+ +VVSPLI
Sbjct: 7 ILKQTFGYDHFRDGQAQVISQVLQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L G+ +++S + Q +Y+ + GK +L+YV PE F+
Sbjct: 67 SLMKDQVDALLTYGVNAAYINSNLSPQEMFNVYKSMQDGK--YKLIYVAPERLMQLEFIH 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L+ + ++L+A+DEAHC+S WGHDFR YR L L+ P++PI+ LTATA +
Sbjct: 125 RLQGL----TVSLIAVDEAHCVSHWGHDFRKDYRLLGQLKATFPNIPIMGLTATADLATR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ + L LQ P + K SF+RPN +RY + D + I+YC R
Sbjct: 181 ADITQQLNLQQPFIFKGSFDRPN----IRYNQVTKYKATDQAIAFVKQQEGSGIIYCNSR 236
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
D+LS L+ G++CA YHAGL + R + D+I + ++VATVAFGMGID+ +VR
Sbjct: 237 RKVDDLSIALAKHGVNCAGYHAGLEGEIRDKIQRDFIQDKIDIIVATVAFGMGIDKSNVR 296
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF++P+S+E++YQE GRAGRD +P+++LL + D R+ Q ST
Sbjct: 297 FVVHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIR-----------QWISTG 345
Query: 389 ERSSKKSIS--DFSQMVDYCEGSGCRRKKILESFGEQVLG 426
E + ++ F+ M + E CRR+ +L F E G
Sbjct: 346 ENPQRNNVELQKFAAMEAFGEAQTCRRQILLNYFAEYSAG 385
>gi|390941990|ref|YP_006405751.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
gi|390415418|gb|AFL82996.1| ATP-dependent DNA helicase RecQ [Belliella baltica DSM 15883]
Length = 711
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 246/412 (59%), Gaps = 23/412 (5%)
Query: 20 LHEKEALVK---LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+++ E++VK +L+ FG+++FR Q IQ+VLS +D LMPTGGGKS+CYQ+PA+
Sbjct: 1 MNQAESVVKSEGILKEFFGYSEFRGNQKQIIQSVLSKKDTIVLMPTGGGKSVCYQVPAMI 60
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
G+ LV+SPLI+LM++QV L GI FL+S+Q+ + I + SGK ++LLY+
Sbjct: 61 FDGLTLVISPLISLMKDQVDALNANGIPAAFLNSSQSQSEQRFISSQIQSGK--IKLLYI 118
Query: 137 TPELTATPGF--MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194
PE + + LK ++ L+LVAIDEAHC+S WGHDFRP Y K+ LR P +
Sbjct: 119 APERLYRGDYPLIDFLKTVN----LSLVAIDEAHCVSQWGHDFRPEYLKIGELRKSFPQI 174
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
P +ALTATA +KD+ + L L+ P SSF+R N+ Y V K DA L L
Sbjct: 175 PFIALTATADKLTRKDIADKLGLKTPQWFISSFDRSNITYRVTAKR---DAMGKLLEFLD 231
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++YCL R +E ++ L A G+S YHAGL + R + +I +++VA
Sbjct: 232 FHKKDSGVIYCLSRKNVEETASELQARGLSALPYHAGLPREEREKNQELFIKDEVKIMVA 291
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ +VR V H N+P+++E +YQE+GRAGRD LPS +LL+Y D + +L
Sbjct: 292 TIAFGMGIDKSNVRFVVHMNMPQNVEGYYQETGRAGRDGLPSDALLFYSGQDANTLGRML 351
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++Q F+ + +M +C+ CRRK +L FGE G
Sbjct: 352 DRG---DNQEFAHVMQEK------LEKMKSFCQTKICRRKFLLNYFGEDHTG 394
>gi|30681987|ref|NP_172562.2| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
gi|75329797|sp|Q8L840.1|RQL4A_ARATH RecName: Full=ATP-dependent DNA helicase Q-like 4A; AltName:
Full=RecQ-like protein 4A; Short=AtRecQ4A;
Short=AtRecQl4A; AltName: Full=SGS1-like protein;
Short=AtSGS1
gi|21539533|gb|AAM53319.1| DNA helicase isolog [Arabidopsis thaliana]
gi|33589672|gb|AAQ22602.1| At1g10930 [Arabidopsis thaliana]
gi|332190544|gb|AEE28665.1| ATP-dependent DNA helicase Q-like 4A [Arabidopsis thaliana]
Length = 1188
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 243/401 (60%), Gaps = 15/401 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 449 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 508
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 509 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 568
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 569 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 628
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N +V + SFNRPNL+Y V + K L+D + +K N D C I+YCL R
Sbjct: 629 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLED----IDKFIKENHFDECGIIYCLSRM 684
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR
Sbjct: 685 DCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRF 744
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFS 386
V H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ +QS + ++
Sbjct: 745 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYN 804
Query: 387 TRERSSK---KSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
S + + + +MV YCE CRR L GE+
Sbjct: 805 RVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEK 845
>gi|146306843|ref|YP_001187308.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina ymp]
gi|145575044|gb|ABP84576.1| ATP-dependent DNA helicase RecQ [Pseudomonas mendocina ymp]
Length = 710
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 240/398 (60%), Gaps = 17/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ FG+ FR Q I+ V +G D LMPTGGGKS+CYQ+PAL + G+ +VVSP
Sbjct: 6 LRILKDVFGYDAFRGNQAAIIERVAAGGDALVLMPTGGGKSLCYQVPALMREGLAVVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L+E G+A L+ST + + +I E + G+ +++LY+ PE P
Sbjct: 66 LIALMDDQVATLEELGVAAVALNSTLSADEQREIAERIRRGQ--IKMLYLAPERLVQPRM 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+S L+ + + L AIDEAHC+S WGHDFRP Y +L L P VP LALTATA +
Sbjct: 124 LSFLQGLD----IALFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRLALTATADKR 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++++++ L L N SSF+RPN+FY ++ KD L L A IVYCL
Sbjct: 180 TREEIVQRLHLDNAERFLSSFDRPNIFYRIQPKD---QPRKQLLGFLAARKGDAGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ +LS+ G YHAGL ++ R+ +++ ++VAT+AFGMGID+ +
Sbjct: 237 SRKKVEEVADFLSSQGFPALPYHAGLPNELRAYHQKRFLNEEGLIMVATIAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR VCH ++PKS+EA+YQE+GRAGRD LP+ + + YG+ D I K NS+
Sbjct: 297 VRFVCHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQD-----VIFLKQMLANSEG-- 349
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER + M+ CE + CRR+ +L F E++
Sbjct: 350 -DERHKRIEQHKLDAMLALCEETRCRRQALLAYFDEEL 386
>gi|320581820|gb|EFW96039.1| ATP-dependent helicase [Ogataea parapolymorpha DL-1]
Length = 1277
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 158/401 (39%), Positives = 246/401 (61%), Gaps = 18/401 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV----LVV 84
+LR F FR+ QL+AI A LSG D F LMPTGGGKS+CYQ+PAL K GI +V+
Sbjct: 517 VLRNTFKLPSFRENQLEAINATLSGEDVFVLMPTGGGKSLCYQLPALVKSGITSGTTIVI 576
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLI+LM++QV L + I ++S + + + ++ +G L L+Y++PE+ +
Sbjct: 577 SPLISLMQDQVHHLLQNQIKAAMINSKSSASQRKQTFDLFVNG--FLDLVYLSPEMISAS 634
Query: 145 GFM-SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
G + + + +H + +L V +DEAHC+SSWGHDFRP Y+ LS + P++P++ALTATA
Sbjct: 635 GMVRNAIATLHKKKMLARVVVDEAHCVSSWGHDFRPDYKALSYFKTEYPEIPMMALTATA 694
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV-RYKDLLDDAYADLCSVLKANGDTCAI 262
V+ D++ +L L++P K SFNR NL+YEV K + + A L + + + I
Sbjct: 695 NEHVRMDIIHNLNLKHPKFFKQSFNRSNLYYEVLPKKKTVVEEIAQLIN--RKYKNMTGI 752
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC + +C++ + L+ GI C YHAG+ R V W ++ QV+ AT+AFGMGI
Sbjct: 753 IYCHSKNSCEQTATRLADYGIKCDFYHAGMTQDDRQRVQLGWQTNEIQVICATIAFGMGI 812
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H +P+++E +YQE+GRAGRD S ++YY M D R ++ ++ ++ K
Sbjct: 813 DKPDVRFVIHLTLPRNLEGYYQETGRAGRDGKHSDCIMYYSMRDARTLQGMIMRD--KEL 870
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
F + ++ ++ Q+ YCE + CRR+++L+ F E
Sbjct: 871 DRF-----NKEQHVNKLRQVTQYCENTTDCRRQQVLQYFNE 906
>gi|113869442|ref|YP_727931.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
gi|113528218|emb|CAJ94563.1| ATP-dependent DNA helicase [Ralstonia eutropha H16]
Length = 615
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 169/404 (41%), Positives = 237/404 (58%), Gaps = 27/404 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIA 89
FG+ FR +Q + I V +G DC LMPTGGGKS+CYQIPAL A G+ +VVSPLIA
Sbjct: 12 FGYHAFRGRQAEIIDHVATGGDCLVLMPTGGGKSLCYQIPALLRQRAGDGVGIVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L E G+ L+ST T + + DL +G+ + +LYV PE TP F
Sbjct: 72 LMQDQVAALTEAGVRAAVLNSTLTGAEASAVERDLLAGR--IEILYVAPERLMTPRFQDL 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L++I + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALTATA +
Sbjct: 130 LERIR----VGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPYVPRIALTATADALTRN 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC------AIV 263
+++E L L N V SSF+RPN+ Y + K D+A L + +KA IV
Sbjct: 186 EIIERLALDNARVFISSFDRPNIRYRIVEK---DNARQQLLAFIKAEHTAADGTHDSGIV 242
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R ++ + +LS GI+ YHAG++ + R + V+VAT+AFGMGID
Sbjct: 243 YCLSRKKVEDTAQWLSGQGINALGYHAGMDAQVRQHHQARFREEEGLVMVATIAFGMGID 302
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D + + ++ ++++ ++
Sbjct: 303 KPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGDVVQQKRMIDESEADDA- 361
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ S S ++ CE +GCRR +IL F E C
Sbjct: 362 -------FKRVSSSKLDALLGLCETAGCRRVRILAYFNEASEPC 398
>gi|260596045|ref|YP_003208616.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis z3032]
gi|260215222|emb|CBA27089.1| ATP-dependent DNA helicase recQ [Cronobacter turicensis z3032]
Length = 635
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 174/425 (40%), Positives = 250/425 (58%), Gaps = 23/425 (5%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
+K +P+ + + ++ +E L K +L+ FG+ QFR Q I AVL GRDC +
Sbjct: 13 LKIAPVLFSVSGVSVAQAEVYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVV 72
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
MPTGGGKS+CYQIPAL K G+ +VVSPLI+LM++QV L G+A L+STQ+ +
Sbjct: 73 MPTGGGKSLCYQIPALVKTGLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQHA 132
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ +G+ +RLLY+ PE F+ L L +VA+DEAHCIS WGHDFRP
Sbjct: 133 VMAGCRTGE--VRLLYIAPERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRP 186
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--R 237
Y L LR P VP +ALTATA ++D++ L L +PL+ SSF+RPN+ Y + +
Sbjct: 187 EYAALGQLRARFPAVPFIALTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEK 246
Query: 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+K L L ++ I+YC R ++ +A L + GIS AAYHAGL + R
Sbjct: 247 FKPL-----DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVR 301
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
+SV + + Q+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++
Sbjct: 302 ASVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAE 361
Query: 358 SLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKIL 417
++L+Y D M ++ + K ER ++ F+ E CRR +L
Sbjct: 362 AMLFYDPAD---MAWLRRCLEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLL 412
Query: 418 ESFGE 422
FGE
Sbjct: 413 NYFGE 417
>gi|354594252|ref|ZP_09012293.1| ATP-dependent DNA helicase RecQ [Commensalibacter intestini A911]
gi|353672427|gb|EHD14125.1| ATP-dependent DNA helicase RecQ [Commensalibacter intestini A911]
Length = 610
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 167/396 (42%), Positives = 243/396 (61%), Gaps = 17/396 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q AI V+ G+D LMPTGGGKS+CYQIP+L +PG+ LV+SPLI
Sbjct: 22 VLKHVFGYEDFRGLQQQAIDFVMQGQDVLLLMPTGGGKSICYQIPSLCRPGMGLVISPLI 81
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L++ GI L S Q I +D+ +G SL LLY++PE + +
Sbjct: 82 ALMDDQVAALRQVGINAGALHSELEPQEAASIRQDMMNG--SLDLLYISPERLLSDDMLR 139
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LK+I L+L+AIDEAHC+S WGH+FRP YR +++L + P+VP +ALTATA P +
Sbjct: 140 FLKRIP----LSLIAIDEAHCVSVWGHEFRPEYRLMTNLSSMFPNVPRIALTATADPTTR 195
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ SL + N VL++SF+R NLF KD L +L+ + D I+YC R
Sbjct: 196 QDIVASLGMPNAHVLQASFHRTNLFIRALPKD---GETKQLLMILQKHKDAACIIYCGSR 252
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++A L+ G + AYHAGL+ + +VL + S ++VATVAFGMGIDR DVR
Sbjct: 253 NKAERVAAMLTGRGFTGLAYHAGLSALEKRAVLLRFRSGEPLIIVATVAFGMGIDRPDVR 312
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
LV H ++PK E +YQ+ GRAGRD P++++L YG +D + + L ++ S Q R
Sbjct: 313 LVVHLDMPKGPEHYYQQIGRAGRDGDPAETVLLYGGEDIVKARYWLEQSNSDEEQKKIAR 372
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
R + M+ + E + CR + +L FGE++
Sbjct: 373 SR--------LNTMIAFAETADCRTQILLRCFGEEL 400
>gi|294142824|ref|YP_003558802.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
gi|293329293|dbj|BAJ04024.1| ATP-dependent DNA helicase RecQ [Shewanella violacea DSS12]
Length = 610
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 163/405 (40%), Positives = 243/405 (60%), Gaps = 19/405 (4%)
Query: 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
KP + + L L+ FG+ FR Q + I+ + +G DC +MPTGGGKS+CYQ+PAL
Sbjct: 7 KPQPQLDPLSSSLQSVFGYRTFRKGQREVIEQICAGVDCLVIMPTGGGKSLCYQLPALQM 66
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
PG+ +VVSPLI+LM++QV L++ G+ +L+S+Q Q +I ++ SG+ L+LLYV+
Sbjct: 67 PGLTIVVSPLISLMKDQVDSLQQMGVNAGYLNSSQAGQESARILREMHSGE--LKLLYVS 124
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PE F+ +L ++H ++L AIDEAHCIS WGHDFRP Y L LR Y P VPI+
Sbjct: 125 PERLLQASFIDRLHELH----ISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIM 180
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA ++D+ + L + P +SF+RPN+ Y V K +A L + A
Sbjct: 181 ALTATADQATRQDICQRLTI-TPFSFLTSFDRPNIRYTVAEKL---NAANQLRQFVTAQN 236
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
T I+YC R DE++ L G + +YHAG + R+ V D ++ + +VVATVA
Sbjct: 237 GTSGIIYCGSRRRVDEVAERLRLQGHNADSYHAGRTQEERADVQDRFLKDQLDIVVATVA 296
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ +VR V H++IPKS+E++YQE+GRAGRD L S++L+ + D R+ ++ ++
Sbjct: 297 FGMGINKSNVRYVVHYDIPKSVESYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQS 356
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ Q + + M + E CRR+ +L F E
Sbjct: 357 EPGPQQQV---------ELHKLNTMAAFAEAQTCRRQVLLHYFDE 392
>gi|290513154|ref|ZP_06552516.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
gi|289774365|gb|EFD82371.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. 1_1_55]
Length = 618
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 247/404 (61%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ VL GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 19 QESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 78
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 79 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 136
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR LP +P +ALTA
Sbjct: 137 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRLPQIPFMALTA 192
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 193 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 246
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 247 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAF 306
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 307 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 363
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 364 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 401
>gi|325268722|ref|ZP_08135351.1| ATP-dependent helicase RecQ [Prevotella multiformis DSM 16608]
gi|324988966|gb|EGC20920.1| ATP-dependent helicase RecQ [Prevotella multiformis DSM 16608]
Length = 727
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 168/397 (42%), Positives = 235/397 (59%), Gaps = 19/397 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +LSG D F LMPTGGGKS+CYQ+P+L G +VVSPLIA
Sbjct: 11 LKHYFGFDKFKGDQEAIIRNLLSGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVSPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ ++ D+ SG +LLYV PE
Sbjct: 71 LMKNQVDVINGISEEDGVAHYLNSSLKKAEIDQVRADIVSG--HTKLLYVAPESLNKEEN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTATA K
Sbjct: 129 IAFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIEAIGVAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D++ SL +++ + KSSFNRPNL+YEVR K DD + +K + I+YCL
Sbjct: 185 VRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGIIYCL 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGID+ D
Sbjct: 245 SRKKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDDFLMEDLDVIVATIAFGMGIDKPD 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H++IPKS+E +YQE+GRAGRD +++Y D ++E K +
Sbjct: 305 VRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKKDLNKLE--------KFMEGKP 356
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ + + + Y E S CRRK +L FGE+
Sbjct: 357 VAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEE 391
>gi|421746369|ref|ZP_16184170.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator HPC(L)]
gi|409775096|gb|EKN56626.1| ATP-dependent DNA helicase RecQ [Cupriavidus necator HPC(L)]
Length = 619
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 175/413 (42%), Positives = 236/413 (57%), Gaps = 27/413 (6%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGI 80
A + +L+ FG+ FR +Q + I+ V G DC LMPTGGGKS+CYQIPAL A G+
Sbjct: 3 AALAILKDVFGYHAFRGRQAEIIEHVAEGGDCLVLMPTGGGKSLCYQIPALLRQRAGHGV 62
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
+VVSPLIALM++QV L E G+ L+ST T + + DL +G+ L +LYV PE
Sbjct: 63 GIVVSPLIALMQDQVAALTEAGVRAAVLNSTLTGAQASAVERDLLAGR--LEILYVAPER 120
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
TP F L R + L AIDEAHC+S WGHDFRP Y +LS L P VP +ALT
Sbjct: 121 LMTPRFQDLL----DRTRVGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPQVPRIALT 176
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA----- 255
ATA +++++E L L + V SSF+RPN+ Y + KD +A L + +KA
Sbjct: 177 ATADDVTRQEIVERLALDDARVFLSSFDRPNIRYRIVEKD---NARQQLLAFIKAEHMAA 233
Query: 256 -NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
IVYCL R +E + +L GI+ YHAG+ R + V+VA
Sbjct: 234 DGTHDSGIVYCLSRRKVEETADWLRGHGINALPYHAGMEAAVRQQHQARFRDEEGLVMVA 293
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD LP+ + + YG+ D +
Sbjct: 294 TIAFGMGIDKPDVRFVAHLDLPKSMEGYYQETGRAGRDGLPANAWMAYGLGD-----VVQ 348
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
K S++ T +R S + ++ CE +GCRR +IL FGE C
Sbjct: 349 QKRMIDESEADETHKRVSS---AKLDALLGLCETAGCRRVRILAYFGETSEPC 398
>gi|389842669|ref|YP_006344753.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
gi|387853145|gb|AFK01243.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ES15]
Length = 609
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 244/406 (60%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|227325786|ref|ZP_03829810.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 609
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 250/403 (62%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L ++L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----ISLIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++ A L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|282878161|ref|ZP_06286958.1| ATP-dependent DNA helicase RecQ [Prevotella buccalis ATCC 35310]
gi|281299739|gb|EFA92111.1| ATP-dependent DNA helicase RecQ [Prevotella buccalis ATCC 35310]
Length = 725
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/406 (41%), Positives = 235/406 (57%), Gaps = 21/406 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+ EK L + L+ +FG F+ +Q I+ +L+G F LMPTGGGKS+CYQ+P+L G
Sbjct: 1 MAEKVNLTEKLKLYFGFDAFKGEQEAIIKHLLAGNSAFVLMPTGGGKSLCYQLPSLIMKG 60
Query: 80 IVLVVSPLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+VVSPLIALM+NQV G+ E+ FL+S+ ++ +D+ SG+ +LLYV
Sbjct: 61 TAIVVSPLIALMKNQVDVINGISEEEGVAHFLNSSLNKAAIQQVMDDVRSGRT--KLLYV 118
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE + LK + ++ AIDEAHCIS WGHDFRP YR + N + D P+
Sbjct: 119 APESLNKEENIEFLKTVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPV 174
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA KV+ D+ SL + + KSSFNRPNL+YEVR K D + ++ +
Sbjct: 175 IALTATATDKVRTDIKRSLGIADAREFKSSFNRPNLYYEVRQK--ASDIDRQIIMFIRQH 232
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +ELS L A I A YHAGL+ RS DD++ R V+VAT+
Sbjct: 233 EGKSGIIYCLSRKKVEELSEVLKANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATI 292
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E
Sbjct: 293 AFGMGIDKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICVAFYARKDLKKLE----- 347
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + E+ + + + Y E S CRRK +L FGE
Sbjct: 348 ---KFMEGKPVAEQDIGRQL--LQETAAYAESSVCRRKMLLHYFGE 388
>gi|302883319|ref|XP_003040560.1| hypothetical protein NECHADRAFT_88354 [Nectria haematococca mpVI
77-13-4]
gi|256721447|gb|EEU34847.1| hypothetical protein NECHADRAFT_88354 [Nectria haematococca mpVI
77-13-4]
Length = 838
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 159/404 (39%), Positives = 242/404 (59%), Gaps = 17/404 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F +FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 69 RMLKDRFRMKRFRHNQLEAINATLGGKDAFVLMPTGGGKSLCYQLPAVVKTGKTQGVTIV 128
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ P + LLYVTPE+
Sbjct: 129 VSPLLSLMQDQVDHMKSLGIQAVAFNGECSAEYKRQVMTAFKERSPEDYIELLYVTPEMV 188
Query: 142 ATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F + ++ +H +G L + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 189 SKNITFNNGMRTLHDKGKLARIVIDEAHCVSQWGHDFRPDYKTLGQVRQRYPGVPVMALT 248
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N SFNRPNL+YEVR K ++ S++K+ +
Sbjct: 249 ATATQNVIVDIRHNLGMDNCQTFSQSFNRPNLYYEVRGKTTNAKCMDEIASLIKSKYANQ 308
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ LS GI+ YHAG++ + ++ V W + +++VAT+AFG
Sbjct: 309 SGIVYTVSRKNAEKVAESLSDQGITARHYHAGVDPQEKAEVQIAWQQGQIKIIVATIAFG 368
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ ++++
Sbjct: 369 MGIDKPDVRFVIHHGLPKSLEGYYQETGRAGRDGDPSDCILFYGKQDIRILKKLIAEGDG 428
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
Q ++ +S +++ +C+ S CRR +IL FGE
Sbjct: 429 NKEQ--------KERQMSMLNRVTAFCDNKSDCRRAEILRYFGE 464
>gi|440297665|gb|ELP90322.1| ATP-dependent RNA helicase DBP3, putative [Entamoeba invadens IP1]
Length = 809
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 228/402 (56%), Gaps = 11/402 (2%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ + ++L F H R Q I +L+G + LMPTGGGKS+CYQ+P L K G L
Sbjct: 348 RDKVNQVLNGVFHHKSLRLLQYPVINCILAGHNVLVLMPTGGGKSLCYQLPMLFKDGYTL 407
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
VVSPLI+LM++QV L GI +S +K ED+ + R++YV PEL
Sbjct: 408 VVSPLISLMQDQVKALNNIGIQAITCNSNSPQNMKL-FEEDVRFNRRKYRVVYVAPELLD 466
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ F+S +K+I+ +GL + + IDE HC+S WGHDFR SY KL R P V + TA
Sbjct: 467 MSSNFISLMKQINEKGLFSYLVIDEVHCVSQWGHDFRESYVKLRDFRKKFPSVQTIMFTA 526
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA +V+ DV+ SL L+ LV +FNR NL Y+++YK D D+ +K + C
Sbjct: 527 TATERVKNDVLISLGLEEALVFNQTFNRVNLTYQIKYKSSQDQCVTDIIQYIKEHAGQCG 586
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IV+C R C+++ L + I YHAG+ + R S+ D W+ VV ATVAFGMG
Sbjct: 587 IVFCFSRKDCEKMDESLKSSKIKSEYYHAGMKAEERKSIQDGWMKGTYDVVCATVAFGMG 646
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H +P S+E F+QESGRAGRD PS+ ++YY D +++ ++ S + +N
Sbjct: 647 IDKADVRFVIHQTMPSSVEQFFQESGRAGRDGKPSECIVYYSQVDVKKIIWLKSGGKPEN 706
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ R + M+D C+ CRR L FGE+
Sbjct: 707 IEKVVER---------SLNAMIDLCQNKKCRRVAQLNYFGEK 739
>gi|417792738|ref|ZP_12440060.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|429117792|ref|ZP_19178710.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449309964|ref|YP_007442320.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
gi|333953169|gb|EGL71149.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii E899]
gi|426320921|emb|CCK04823.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 701]
gi|449099997|gb|AGE88031.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii SP291]
Length = 609
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 244/406 (60%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|85817623|gb|EAQ38797.1| ATP-dependent DNA helicase RecQ [Dokdonia donghaensis MED134]
Length = 731
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 246/412 (59%), Gaps = 34/412 (8%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
E+ L K L+ +FG QF+ Q + I++++ G F +MPTGGGKS+CYQ+PAL G
Sbjct: 4 EQIDLHKELKKYFGFGQFKGLQEEVIKSIVGGNHTFVIMPTGGGKSLCYQLPALIAEGTA 63
Query: 82 LVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
+VVSPLIALM+NQV L+ ++GIA SS ++KT + ED+ G +LLYV
Sbjct: 64 IVVSPLIALMKNQVDALRGISQDEGIAHVLNSSLTKGEIKT-VKEDIARG--VTKLLYVA 120
Query: 138 PE-LTATPG--FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD- 193
PE LT F+ + K ++ +AIDEAHCIS WGHDFRP YR L + + D
Sbjct: 121 PESLTKEENVEFLREQK-------ISFLAIDEAHCISEWGHDFRPEYRNLRKIIGRIGDN 173
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
+PI+A+TATA PKVQ+D++++L + N K+SFNRPNL+YEVR K DA D+ +
Sbjct: 174 IPIIAVTATATPKVQEDILKNLGITNANTFKASFNRPNLYYEVRPKTAQVDA--DIIRFV 231
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K N I+YCL R +EL+ L G+ YHAGL+ K R+ D ++ VVV
Sbjct: 232 KQNEGKSGIIYCLARKRVEELAQTLQVNGLKAVPYHAGLDAKTRARHQDMFLMEDVDVVV 291
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 292 ATIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLE-- 349
Query: 374 LSKNQSKNSQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I ++V + E S RRK IL FGE+
Sbjct: 350 ----------KFMSGKPVAEQEIGHALLQEVVAFAETSISRRKFILHYFGEE 391
>gi|363580415|ref|ZP_09313225.1| ATP-dependent DNA helicase RecQ [Flavobacteriaceae bacterium HQM9]
Length = 728
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/405 (42%), Positives = 237/405 (58%), Gaps = 28/405 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QFR Q I+++L D F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 6 LQKALKKYFGFSQFRGLQEQVIKSLLKKEDTFVIMPTGGGKSLCYQLPALMSEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E GIA SS V + D+ +G +LLYV PE
Sbjct: 66 PLIALMKNQVDAIRSISSENGIAHVLNSSLNKTDV-ANVKMDISNG--VTKLLYVAPESL 122
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ L + ++ +A+DEAHCIS WGHDFRP YR L + + D +PI+ LT
Sbjct: 123 VKEEYAEFL----ASQTISFLAVDEAHCISEWGHDFRPEYRNLRRIIKGIGDNIPIIGLT 178
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + K+SFNRPNLFYEVR K + D+ +K N +
Sbjct: 179 ATATPKVQEDILKNLGISGANTFKASFNRPNLFYEVRPKTA--NVETDIIRFVKQNSEKS 236
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K R+ D ++ VVVAT+AFGM
Sbjct: 237 GIIYCLSRKKVEELAQALQVNGIIAVPYHAGLDAKTRAKHQDMFLMEDIDVVVATIAFGM 296
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H++IPKS+E++YQE+GRAGRD L YY D ++E
Sbjct: 297 GIDKPDVRFVVHYDIPKSIESYYQETGRAGRDGGEGHCLAYYAYKDIEKLE--------- 347
Query: 381 NSQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I + ++V + E S RRK IL FGE+
Sbjct: 348 ---KFMSGKPVAEQEIGNALLQEVVAFAETSISRRKFILHYFGEE 389
>gi|240949474|ref|ZP_04753814.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
gi|240296047|gb|EER46708.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor NM305]
Length = 604
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 242/389 (62%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I+AVL+G D +M TGGGKS+CYQ+PAL G+ LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEVIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +++STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 75 QVDQLLTNGIEAGYINSTQTFEEQQHVEQKAISGQ--LKLLYLSPEKVMTQGFFHFI--- 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L LR+ P+VP++ALTATA P + D++
Sbjct: 130 -SHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSTFPNVPMMALTATADPTTRHDIIH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L LQ P SF+RPN+ Y V+ K + A + K G + IVYC R +E
Sbjct: 189 HLRLQEPHTYLGSFDRPNIRYTVQEKFKPMEQLAKF--IAKQQGKS-GIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA G+S YHAG+ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVAHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ +L + ++ ++
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSEAILFYDPADYAWLQKVLLEEPESEQRNI---KQHKL 362
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
++IS F+ E CRR +L FGE
Sbjct: 363 QAISAFA------ESQTCRRLVLLNYFGE 385
>gi|255579679|ref|XP_002530679.1| DNA helicase hus2, putative [Ricinus communis]
gi|223529772|gb|EEF31710.1| DNA helicase hus2, putative [Ricinus communis]
Length = 1233
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 165/403 (40%), Positives = 242/403 (60%), Gaps = 17/403 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL PGI LV+SPL++L+++
Sbjct: 455 FGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQLPALVCPGITLVISPLVSLIQD 514
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKK 152
Q++ L + I+ +LS+ + +I +L S +LLYVTPE A + L+
Sbjct: 515 QIMHLLQANISAAYLSANMEWAEQQEILRELSSDYCKYKLLYVTPEKVAKSDVLLRNLES 574
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+++RGLL + IDEAHC+S WGHDFRP Y++L L+ P+LALTATA V++DV+
Sbjct: 575 LNARGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFEKTPVLALTATATASVKEDVV 634
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L + ++ + SFNRPNL+Y V + K LDD + +K N D C I+YCL R
Sbjct: 635 QALGLVDCIIFRQSFNRPNLWYSVVPKTKKCLDD----IDKFIKENHFDECGIIYCLSRM 690
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 691 DCEKVAEKLQECGHKAAFYHGNMDAAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRF 750
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK--------N 381
V H ++PKS+E ++QE GRAGRD L S +LYY D R++ ++ + Q + N
Sbjct: 751 VIHHSLPKSIEGYHQECGRAGRDGLRSSCVLYYSYSDYIRVKHMIVQGQIEQSPWTPGYN 810
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
+ + +R +K+ + +MV YCE CRR L FGE+
Sbjct: 811 RINNTNSDRILEKNTENLLRMVSYCENDVDCRRILQLLHFGEK 853
>gi|429763532|ref|ZP_19295880.1| ATP-dependent DNA helicase RecQ [Anaerostipes hadrus DSM 3319]
gi|429178314|gb|EKY19594.1| ATP-dependent DNA helicase RecQ [Anaerostipes hadrus DSM 3319]
Length = 625
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 168/417 (40%), Positives = 245/417 (58%), Gaps = 14/417 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
KLL+ +FG+ +FR Q I+A L+G+D +MPTG GKS+C+QIPAL GI LV+SPL
Sbjct: 12 KLLKQYFGYDEFRQGQEQLIEAALNGQDVLGIMPTGAGKSLCFQIPALMMDGITLVISPL 71
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
I+LM++QV L + GI FL+S+ T Q T + + + +++YV PE T GF
Sbjct: 72 ISLMKDQVGTLNQAGIHAAFLNSSLTQGQYHTALKYAM---QGRYKIIYVAPERLETEGF 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP- 205
++ ++S ++++A+DEAHC+S WG DFRPSY K+ LP P+L A
Sbjct: 129 INF--ALNSGVKISMLAVDEAHCVSQWGQDFRPSYLKILEFLKKLPYRPVLTAYTATATA 186
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD----TCA 261
+V+ D+M+ L L++P VL + F+R NL+Y V+ D Y +L S LK + +
Sbjct: 187 EVRDDIMDILNLRDPFVLTTGFDRENLYYAVKRPR---DKYRELLSYLKEKEEKMPGSSG 243
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E+ L G S YHAGL+D+ R +D+I RKQ++VAT AFGMG
Sbjct: 244 IIYCLSRKNVEEVCYQLREDGFSVTRYHAGLSDEERKENQEDFIYDRKQIMVATNAFGMG 303
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+N+PK+ME++YQE+GRAGRD P++ +LYY D R F++ +
Sbjct: 304 IDKPDVRFVVHYNMPKNMESYYQEAGRAGRDGEPAECILYYAPIDNRTNRFLIENGEENE 363
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTHRVVSF 438
T++ ++ QM YC C R IL FGEQ G + + + F
Sbjct: 364 ELDAITKQIVMERDWERLRQMTFYCYTKECLRHYILNYFGEQTSGYCGNCLNCLTEF 420
>gi|375129367|ref|YP_004991462.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
gi|315178536|gb|ADT85450.1| ATP-dependent DNA helicase RecQ [Vibrio furnissii NCTC 11218]
Length = 611
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 160/394 (40%), Positives = 236/394 (59%), Gaps = 18/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FRD Q + I++ ++GRD +MPTGGGKS+CYQIPALA+ G+ +V+SPLI
Sbjct: 19 ILRDVFGYQTFRDGQQEVIESAVAGRDALVIMPTGGGKSLCYQIPALAREGVTVVISPLI 78
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV LK G+A E ++STQ+ + IY + SG+ L+LLYV+PE T F+
Sbjct: 79 SLMKDQVDQLKANGVAAECVNSTQSREALMGIYNRMHSGQ--LKLLYVSPERVLTGEFIE 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+L + L ++A+DEAHCIS WGHDFRP Y L L+ P VPI+ALTATA +
Sbjct: 137 RLHNLP----LAMIAVDEAHCISQWGHDFRPEYAALGQLKQQFPQVPIMALTATADDATR 192
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D++ L L +P V SF+RPN+ Y + K + + L C I+YC R
Sbjct: 193 SDILSRLNLTDPHVYLGSFDRPNIRYTLMEK---HKPVSQVIRYLDTQKGHCGIIYCGSR 249
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ ++ L I A YHAG++ R+ V + + Q+VVATVAFGMGI++ +VR
Sbjct: 250 KKVEMVTEKLCNNHIRAAGYHAGMDADERAYVQEAFQRDDIQIVVATVAFGMGINKPNVR 309
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V HF+IP+++E++YQE GRAGRD LP+++++ Y D + +L + + T
Sbjct: 310 FVVHFDIPRNIESYYQEPGRAGRDGLPAEAVMLYDPADIAWLRRMLDEKSDGPQKQVETH 369
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + M ++ E CRR+ +L FGE
Sbjct: 370 K---------LTAMSNFAEAQTCRRQVLLNYFGE 394
>gi|156935855|ref|YP_001439771.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii ATCC
BAA-894]
gi|424801979|ref|ZP_18227521.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|429119492|ref|ZP_19180209.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
gi|156534109|gb|ABU78935.1| hypothetical protein ESA_03738 [Cronobacter sakazakii ATCC BAA-894]
gi|423237700|emb|CCK09391.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 696]
gi|426326019|emb|CCK10946.1| ATP-dependent DNA helicase RecQ [Cronobacter sakazakii 680]
Length = 609
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 244/406 (60%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSREEQQAVLAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|11121449|emb|CAC14868.1| DNA Helicase [Arabidopsis thaliana]
Length = 1182
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 243/401 (60%), Gaps = 15/401 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 443 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 502
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 503 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 562
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 563 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 622
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG-DTCAIVYCLERT 269
++L L N +V + SFNRPNL+Y V + K L+D + +K N D C I+YCL R
Sbjct: 623 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLED----IDKFIKENHFDECGIIYCLSRM 678
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
C+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR
Sbjct: 679 DCEKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRF 738
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFS 386
V H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ +QS + ++
Sbjct: 739 VIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYN 798
Query: 387 TRERSSK---KSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
S + + + +MV YCE CRR L GE+
Sbjct: 799 RVASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEK 839
>gi|198429056|ref|XP_002130932.1| PREDICTED: similar to MGC131022 protein [Ciona intestinalis]
Length = 652
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 236/398 (59%), Gaps = 19/398 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ F FR KQL+AI A LSGRD +M TGGGKS+ YQ+PAL GI +V+SPL+
Sbjct: 77 ILKSTFRMDDFRSKQLEAINATLSGRDVILIMSTGGGKSLTYQLPALVGKGITVVISPLV 136
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFM 147
+LME+Q+I L GI + L++ T +++ + S PS RLLYVTPE ++ + FM
Sbjct: 137 SLMEDQIISLNRFGIEAKLLNAASTKDEVKHVHQSMTSQSPSFRLLYVTPEKISKSKRFM 196
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
++L+K + LN +AIDE HC S WG+DFRP Y+ L L+ P PI+ LTAT+ KV
Sbjct: 197 AQLEKCYKSVNLNRIAIDEVHCASQWGNDFRPDYKILGILKRQFPKSPIIGLTATSTDKV 256
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYC 265
+D + L + LV K++ +R NLFY+VR K + DD D+ ++ +N + I+YC
Sbjct: 257 TEDTKKMLNIPFALVFKTALDRRNLFYQVREKPNTNDDVIKDIVQLINSNFKNQPGIIYC 316
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R C E+++ L+ GI + YHA L ++ V W + QV+ AT+AFGMGID+
Sbjct: 317 FSRKNCAEVASSLNKRGIKSSEYHAQLTPDDKTKVHHMWSDNNIQVICATIAFGMGIDKP 376
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H ++ KS+E +YQESGRAGRD P+ LLY+G D +
Sbjct: 377 NVRFVIHHSMSKSVENYYQESGRAGRDGSPALCLLYFGFTDVFKQ--------------- 421
Query: 386 STRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGE 422
ST + + + + +QM+ YC + CRR I FGE
Sbjct: 422 STMVMTERTGLDNLNQMIKYCLDVKSCRRNLISTYFGE 459
>gi|317494839|ref|ZP_07953250.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316917164|gb|EFV38512.1| ATP-dependent DNA helicase RecQ [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 612
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I A ++GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIPALVMDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G++ L+STQ + + ++Y SG +++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVSAACLNSTQNREQQQEVYAGCRSG--AIKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + +L+A+DEAHCIS WGHDFRP Y L ++ PD+P++ALTATA
Sbjct: 133 DQLPHWNP----SLLAVDEAHCISQWGHDFRPEYSALGLIKQRFPDIPVIALTATADDAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D+ L L +PLV SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKPL-----DQLIRFVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G S AYHAGL+ + RSSV D + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQDAFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++EA+YQE+GRAGRD LP++++L Y D + L + +
Sbjct: 304 NVRFVVHFDIPRNIEAYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPEGQQKEI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER +++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMNAFA------EAQTCRRLVLLNYFGE 391
>gi|148266306|ref|YP_001233012.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
gi|146399806|gb|ABQ28439.1| ATP-dependent DNA helicase RecQ [Geobacter uraniireducens Rf4]
Length = 715
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 160/389 (41%), Positives = 238/389 (61%), Gaps = 19/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + ++ ++ G D F +MPTGGGKS+CYQIPAL +PG+ +VVSPLI+LM++
Sbjct: 13 FGYNTFRQPQQEIVEGLIRGDDAFVIMPTGGGKSLCYQIPALHRPGVGIVVSPLISLMKD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L+ G+ F +S+ ++ +L + +L L+YV PE + F+ +LK++
Sbjct: 73 QVDALRANGVRAAFYNSSLGEVEARRVLAELHN--QALDLIYVAPERLMSEPFLERLKEM 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA + + D++E
Sbjct: 131 E----IALFAIDEAHCVSQWGHDFRPEYVQLGRLRRLFPQVPMIALTATADAQTRGDIIE 186
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCD 272
L LQ + F+RPN+ Y V K + L + L G D IVY L R +
Sbjct: 187 RLGLQGAACHVAGFDRPNIRYTVMEKQ---KPFVQLTTFLAGRGRDEAGIVYALSRKRVE 243
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
E++ LSA GI+ A YHAGL D+ RS V + + QVVVATVAFGMGID+ +VR V H
Sbjct: 244 EVAERLSAAGIAAAPYHAGLPDRERSRVQEAFQRDELQVVVATVAFGMGIDKPNVRFVVH 303
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
+++PK++E++YQE+GR+GRD LP+++LL +G D ++++ +N + +
Sbjct: 304 YDLPKNIESYYQETGRSGRDGLPAEALLLFGYGD-----IAVARSLIENGGN----AEQN 354
Query: 393 KKSISDFSQMVDYCEGSGCRRKKILESFG 421
+ + + MV + E CRR+ +L FG
Sbjct: 355 RIELHKLNAMVGFAEAVTCRRRVLLGYFG 383
>gi|409911451|ref|YP_006889916.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
gi|298505021|gb|ADI83744.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens KN400]
Length = 603
Score = 314 bits (805), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/398 (41%), Positives = 241/398 (60%), Gaps = 18/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR FG+ FR Q + + V G D F LMPTGGGKS+CYQIP+L +PG+ +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E G+A +ST + ++ L G+ L LLYV PE T F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRQVLARLHGGE--LDLLYVAPERLMTDAF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L++I + L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA +
Sbjct: 124 LERLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L L++ + + F+RPN+ Y V K + L L IVYCL
Sbjct: 180 TRGDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQ---KPFRQLEEFLATRPREAGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A G+ AAYHAGL D RS V + ++ +VVVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAEKLRAAGVEAAAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+++PK++E++YQE+GRAGRD LP+++LL +G D +S++ ++ +
Sbjct: 297 VRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGD-----IPVSRSLIESGGN-- 349
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ + + MV + E CRR+ +L FGE++
Sbjct: 350 --PEQVRIELHKLNAMVGFAEALVCRRRALLGYFGERL 385
>gi|78187521|ref|YP_375564.1| ATP-requiring DNA helicase RecQ [Chlorobium luteolum DSM 273]
gi|78167423|gb|ABB24521.1| ATP-dependent DNA helicase RecQ [Chlorobium luteolum DSM 273]
Length = 615
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 237/399 (59%), Gaps = 18/399 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EA+ + L+ FG FR Q + ++A+L GRD F +MPTGGGKS+CYQ+PA+ PG +V
Sbjct: 8 EAVHEALQRVFGFQAFRPNQREVVRAILEGRDVFAVMPTGGGKSLCYQLPAVLLPGTCIV 67
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV G + GI FL+S+Q + + + L SG+ L LLYV PE A
Sbjct: 68 VSPLIALMKDQVDGARANGIRAAFLNSSQLPEERQMVANALQSGE--LELLYVAPERFAV 125
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
F + L+ I +++ IDEAHCIS WGHDFRP Y LS+L + P+ A TATA
Sbjct: 126 DSFRAMLRGIR----ISMAVIDEAHCISEWGHDFRPDYLSLSALVDLAGMAPVAAFTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+VQ D + L L++P ++++SF+RPNL YEV +KD D + S+L+ I+
Sbjct: 182 TERVQADTLLRLALRDPFLVRASFDRPNLSYEVLFKDSAD---RQILSILRRFSGKAGII 238
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
Y R + ++ +A L A G YHAGL+D+ R + +I V++ATVAFGMGID
Sbjct: 239 YRASRKSVNDTAAMLRAKGFRALPYHAGLDDREREQNQNAFIRDEVDVIIATVAFGMGID 298
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ ++R V H ++PKS+E +YQE+GRAGRD P+ L Y D ++ F + +
Sbjct: 299 KSNIRFVIHADLPKSIENYYQETGRAGRDGEPAHCTLLYSQGDIAKVRFFIDAMADGEER 358
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ +++ S + + + CRR+ +LE FGE
Sbjct: 359 A---------RALFALSTVSAFAASAVCRRRALLEHFGE 388
>gi|395645903|ref|ZP_10433763.1| ATP-dependent DNA helicase RecQ [Methanofollis liminatans DSM 4140]
gi|395442643|gb|EJG07400.1| ATP-dependent DNA helicase RecQ [Methanofollis liminatans DSM 4140]
Length = 724
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 240/401 (59%), Gaps = 17/401 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ +LL+ ++G+ F Q + I +VL G D +M TGGGKS+CYQ+PAL G+ +V+S
Sbjct: 4 ITELLQRYWGYTSFLPYQKEIITSVLDGHDTLAVMATGGGKSLCYQLPALVLGGLTIVIS 63
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM+NQV L E+GI +ST + + ++ L + ++R+L+++PE P
Sbjct: 64 PLIALMKNQVDDLNERGIRAVAYNSTLDYRERVEVERGLQNN--TVRMLFISPEKCMQPS 121
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+S + + R L+AIDEAHCIS WGH+FRP YR+LS+LR + P VPI+ALTATA P
Sbjct: 122 FLSFINRFPVR----LIAIDEAHCISEWGHNFRPEYRQLSALREHFPPVPIVALTATAIP 177
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
V++D+ L L + SFNRPNL Y V K+ + D + + + I+YC
Sbjct: 178 AVREDICTQLQLSDVREYIGSFNRPNLSYRVVPKNKPVEFILDY---IGQHPNDSGIIYC 234
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R ++L+ L G +AYHAGL + R V + +I ++ ATVAFGMGID+
Sbjct: 235 LSRKATEDLAETLVEHGHMASAYHAGLLPEVRKKVQEAFIKDDISIICATVAFGMGIDKP 294
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H ++PKS+EA+YQESGRAGRD P + +L Y D ++ ++L + Q
Sbjct: 295 DVRYVIHHDLPKSVEAYYQESGRAGRDGQPGECILLYSRGDLAKVRYLLEHDDQDEEQ-- 352
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
S + ++VDYCE + CRRK +L FGE+ G
Sbjct: 353 ------SGIAFKKMQEVVDYCETNSCRRKYLLAYFGEEYPG 387
>gi|393775758|ref|ZP_10364067.1| ATP-dependent DNA helicase [Ralstonia sp. PBA]
gi|392717247|gb|EIZ04812.1| ATP-dependent DNA helicase [Ralstonia sp. PBA]
Length = 619
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 172/415 (41%), Positives = 241/415 (58%), Gaps = 31/415 (7%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVL 82
+ LL+ FG+ FRD+Q D I+ V G DC LMPTGGGKS+CYQ+PAL A G+ +
Sbjct: 5 LALLKEVFGYFAFRDRQRDIIEHVAGGGDCLVLMPTGGGKSLCYQLPALLRKRAGHGVGI 64
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L E G+ +L+ST + +I L G+ L LLYV PE
Sbjct: 65 VVSPLIALMQDQVAALSELGVNAAYLNSTLSSAEAAEIERALLRGE--LDLLYVAPERLL 122
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
TP F+ L+ R + L AIDEAHC+S WGHDFRP Y +LS L PDVP +ALTAT
Sbjct: 123 TPRFLGLLE----RARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHEQFPDVPRIALTAT 178
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---- 258
A + +++ L L + V SSF+RPN+ Y + KD +A L + ++A
Sbjct: 179 ADAVTRDEIIHRLALDDAQVFVSSFDRPNIRYRIVEKD---NARTQLLAFIRAEHGRPDG 235
Query: 259 ------TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
+VYCL R +E + +L++ GI+ YHAGL+ R ++ V+
Sbjct: 236 KGGIEHDAGVVYCLSRRKVEETAEWLASQGINALPYHAGLDAGVRQMNQQRFLREEGIVI 295
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
VAT+AFGMGID+ DVR V H ++PKS+E +YQE+GRAGRD LP+ + + YG+ D
Sbjct: 296 VATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAYGLGD-----V 350
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
+ K +S + + +R S + ++ CE +GCRR+++L FGE C
Sbjct: 351 VQQKRMIDDSDADAVHKRVSAAKL---DALLGLCETAGCRRERLLSYFGEASHPC 402
>gi|325855159|ref|ZP_08171782.1| ATP-dependent DNA helicase RecQ [Prevotella denticola CRIS 18C-A]
gi|325483896|gb|EGC86840.1| ATP-dependent DNA helicase RecQ [Prevotella denticola CRIS 18C-A]
Length = 727
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 235/396 (59%), Gaps = 19/396 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+PAL G +V+SPLIA
Sbjct: 11 LKHYFGFDKFKGNQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPALIMEGTAIVISPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ ++ D+ SG +LLYV PE
Sbjct: 71 LMKNQVDVINGISEEDGVAHYLNSSLKKAEVDQVRADIVSG--HTKLLYVAPESLNKEEN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L+ + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTATA K
Sbjct: 129 IAFLRSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIDAIGVAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D++ SL +++ + KSSFNRPNL+YEVR K DD + +K + I+YCL
Sbjct: 185 VRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGIIYCL 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGID+ D
Sbjct: 245 SRKKVEELAAVLQANDIKAAPYHAGLDSETRSRTQDDFLMEELDVIVATIAFGMGIDKPD 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H++IPKS+E +YQE+GRAGRD +++Y D ++E K +
Sbjct: 305 VRFVIHYDIPKSLEGYYQETGRAGRDGEEGLCIVFYSKKDLNKLE--------KFMEGKP 356
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ + + + Y E S CRRK +L FGE
Sbjct: 357 VAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGE 390
>gi|410075411|ref|XP_003955288.1| hypothetical protein KAFR_0A07190 [Kazachstania africana CBS 2517]
gi|372461870|emb|CCF56153.1| hypothetical protein KAFR_0A07190 [Kazachstania africana CBS 2517]
Length = 1318
Score = 314 bits (805), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 159/406 (39%), Positives = 248/406 (61%), Gaps = 18/406 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG---- 79
E + + L F FR Q +A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G
Sbjct: 539 EEVEERLHGVFKLPGFRPNQEEAVNATLDGKDVFVLMPTGGGKSLCYQLPAIVKSGRTRG 598
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L K I SS T + + + + G L ++Y++PE
Sbjct: 599 TTIVISPLISLMQDQVEHLLAKNIKASMFSSKGTSEERRQTFNLFIHG--LLDVVYISPE 656
Query: 140 L-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
+ +A+ + K+++ G L V +DEAHC+S+WGHDFRP Y++L + P +P++A
Sbjct: 657 MISASQQCKRAIDKLYTDGNLARVVVDEAHCVSNWGHDFRPDYKELKMFKVEYPTIPMMA 716
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA+ +V D++ +L L+N + LK SFNR NL+YEV+ KD D ++C ++K
Sbjct: 717 LTATASKQVIMDIIHNLGLKNEVFLKQSFNRTNLYYEVKKKD--KDTMNNICDMIKNRFR 774
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
+ I+YC + +C+++S+ L I CA YHAG+ + RS+V W QV+ ATVA
Sbjct: 775 NQTGIIYCHSKNSCEQVSSQLQRKNIRCAYYHAGMEPEERSAVQKAWQEDEIQVICATVA 834
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H+ +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+
Sbjct: 835 FGMGIDKPDVRFVIHYTVPRTLEGYYQETGRAGRDGNYSYCVTYFHFKDIRTMQTMIQKD 894
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
Q+ + + + +K ++ +++ YC+ + CRRK +L F E
Sbjct: 895 QNLDRE-------NKQKHLNKLQEVMAYCDNITDCRRKLVLSYFNE 933
>gi|417228931|ref|ZP_12030689.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
gi|386208266|gb|EII12771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0959]
Length = 611
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 241/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+L SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLILISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|419801388|ref|ZP_14326616.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|419845355|ref|ZP_14368628.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
gi|385193739|gb|EIF41095.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK262]
gi|386415831|gb|EIJ30351.1| ATP-dependent DNA helicase RecQ [Haemophilus parainfluenzae HK2019]
Length = 618
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/404 (41%), Positives = 243/404 (60%), Gaps = 24/404 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K + LR FG+ FR Q + I A LSG+D +M TG GKS+CYQIPAL PG+ L
Sbjct: 12 KTTALHTLRSVFGYQSFRKGQEEVIHAALSGQDALVVMATGNGKSLCYQIPALCFPGLTL 71
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L+ GI +FL+S+QT + + ++ L SG+ L+LLYV+PE
Sbjct: 72 VISPLISLMKDQVDQLQANGIEADFLNSSQTPEQQQQVENKLISGQ--LKLLYVSPEKVM 129
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P+ PI+ALTAT
Sbjct: 130 TNSFF----QLISYAQISFIAIDEAHCISQWGHDFRPEYTQLGGLKAAFPNAPIMALTAT 185
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L L NP SF+RPN+ Y E ++K + L + A
Sbjct: 186 ADYATRQDILTHLKLDNPHKYIGSFDRPNIRYTLEEKFKPM-----EQLTRFVLAQKGKS 240
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R+ + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFGM
Sbjct: 241 GIVYCNSRSKVERIAEILRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFGM 300
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ +L K ++
Sbjct: 301 GINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPET 360
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
Q E+ ++I +F+ E CRR +L FGE
Sbjct: 361 PQRQI----EQHKLEAIGEFA------ESQTCRRLVLLNYFGEH 394
>gi|238760167|ref|ZP_04621314.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
gi|238701603|gb|EEP94173.1| ATP-dependent DNA helicase recQ [Yersinia aldovae ATCC 35236]
Length = 605
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 168/398 (42%), Positives = 242/398 (60%), Gaps = 22/398 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 9 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 68
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 69 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 126
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 127 LDQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 182
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PLV SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 183 TRGDILRLLNLSQPLVQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 237
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 238 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 297
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 298 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQD 357
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 358 I---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 386
>gi|410611522|ref|ZP_11322620.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
gi|410168940|dbj|GAC36509.1| ATP-dependent DNA helicase RecQ [Glaciecola psychrophila 170]
Length = 605
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/401 (39%), Positives = 232/401 (57%), Gaps = 23/401 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ +FRD Q I V+ +D LMPTGGGKS+CYQIPA+ PG+ +VVSPL
Sbjct: 17 QVLKQTFGYDRFRDGQAQVITQVMQQKDVLVLMPTGGGKSLCYQIPAMLLPGLTIVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ +++ST + Q IY+ + K +L+YV PE F+
Sbjct: 77 ISLMKDQVDALLTYGVNAAYINSTLSSQDMFNIYKGMQDDK--YQLIYVAPERLMQLDFI 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L+ + ++L+A+DEAHC+S WGHDFR YR L L+ P +PI+ LTATA
Sbjct: 135 QRLQGL----TISLIAVDEAHCVSHWGHDFRKDYRLLGQLKGTFPHIPIMGLTATADLAT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ + L LQ P + K SF+RPN +RY + + D I+YC
Sbjct: 191 RADITQQLNLQQPFIFKGSFDRPN----IRYNQITKYKATEQAIAFIKQQDGSGIIYCNS 246
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R D+LS L+ GI+CA YHAGL R + D+I + ++VATVAFGMGID+ +V
Sbjct: 247 RRKVDDLSIALAKQGINCAGYHAGLEGAIRDKIQRDFIQDKIDIIVATVAFGMGIDKSNV 306
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V HF++P+S+E++YQE GRAGRD +P+++LL + D R+ Q ST
Sbjct: 307 RFVLHFDLPRSIESYYQEIGRAGRDGMPAEALLLFDEKDAARIR-----------QWIST 355
Query: 388 RERSSKKSIS--DFSQMVDYCEGSGCRRKKILESFGEQVLG 426
E + S+ F+ M + E CRR+ +L F E G
Sbjct: 356 GENLERNSVELQKFAAMEAFGEAQTCRRQILLNYFAEYSAG 396
>gi|424669859|ref|ZP_18106884.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
Ab55555]
gi|401071930|gb|EJP80441.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia
Ab55555]
gi|456734355|gb|EMF59171.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia EPM1]
Length = 601
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 242/406 (59%), Gaps = 23/406 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
++P H+ LL+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL
Sbjct: 3 SRPAHD------LLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALL 56
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +V+SPLIALM++QV L++ G+ E+L+ST + ++ +L +G+ L +LYV
Sbjct: 57 RDGCGIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGE--LDMLYV 114
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE T F+S L SR + L AIDEAHC+S WGHDFRP YR+L+ L P +P
Sbjct: 115 APERLLTGRFLSLL----SRSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPR 170
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA P Q+++ E L LQ SSF+RPN+ Y V KD +A L L+ +
Sbjct: 171 IALTATADPPTQREIAERLDLQEARHFVSSFDRPNIRYTVVQKD---NARKQLTDFLRGH 227
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYC+ R +E + +L G + YHAGL + R++ ++ V+ AT+
Sbjct: 228 RGEAGIVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATI 287
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD +++ L YG+ D +L K
Sbjct: 288 AFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLK 342
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S++ R++ + + ++ YCE CRR+ +L FGE
Sbjct: 343 QMIEQSEAGEERKQLERGKL---DHLLGYCESMQCRRQVLLAGFGE 385
>gi|190575547|ref|YP_001973392.1| ATP-dependent DNA helicase [Stenotrophomonas maltophilia K279a]
gi|190013469|emb|CAQ47104.1| putative ATP-dependent DNA helicase [Stenotrophomonas maltophilia
K279a]
Length = 601
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 242/406 (59%), Gaps = 23/406 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
++P H+ LL+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL
Sbjct: 3 SRPAHD------LLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALL 56
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +V+SPLIALM++QV L++ G+ E+L+ST + ++ +L +G+ L +LYV
Sbjct: 57 RDGCGIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGE--LDMLYV 114
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE T F+S L SR + L AIDEAHC+S WGHDFRP YR+L+ L P +P
Sbjct: 115 APERLLTGRFLSLL----SRSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPR 170
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA P Q+++ E L LQ SSF+RPN+ Y V KD +A L L+ +
Sbjct: 171 IALTATADPPTQREIAERLDLQEARHFVSSFDRPNIRYTVVQKD---NARKQLTDFLRGH 227
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYC+ R +E + +L G + YHAGL + R++ ++ V+ AT+
Sbjct: 228 RGEAGIVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPEVRANNQRRFLREDGIVMCATI 287
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD +++ L YG+ D +L K
Sbjct: 288 AFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLK 342
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S++ R++ + + ++ YCE CRR+ +L FGE
Sbjct: 343 QMIEQSEAGEERKQLERGKL---DHLLGYCESMQCRRQVLLAGFGE 385
>gi|227114714|ref|ZP_03828370.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|403060389|ref|YP_006648606.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
gi|402807715|gb|AFR05353.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PCC21]
Length = 608
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 170/403 (42%), Positives = 249/403 (61%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L + L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----IALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQISSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++ A L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|417714622|ref|ZP_12363574.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|417719543|ref|ZP_12368424.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
gi|332998230|gb|EGK17832.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-272]
gi|333013771|gb|EGK33134.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-227]
Length = 609
Score = 314 bits (804), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D + L + Q Q
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKQQGQLQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|56477822|ref|YP_159411.1| ATP-dependent DNA helicase protein [Aromatoleum aromaticum EbN1]
gi|56313865|emb|CAI08510.1| ATP-dependent DNA helicase protein [Aromatoleum aromaticum EbN1]
Length = 610
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 167/413 (40%), Positives = 244/413 (59%), Gaps = 20/413 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P+ + + LL FG+ FR +Q ++ V +G D LMPTGGGKS+C+QIPAL +
Sbjct: 6 PVAASPSSLHLLEHVFGYTAFRGEQAAIVEHVAAGGDALVLMPTGGGKSLCFQIPALMRT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G +VVSPLIALM++QV L+E G+A +L+S+Q + DL +G+ L LLYV P
Sbjct: 66 GTAVVVSPLIALMQDQVSALREAGVAAAYLNSSQAADESAAVERDLVAGR--LDLLYVAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E T ++ L ++H G + L AIDEAHC+S WGHDFRP Y +LS L P VP +A
Sbjct: 124 ERLLTARLLATLDRLHEAGRIALFAIDEAHCVSQWGHDFRPEYLQLSVLSERFPAVPRIA 183
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-G 257
LTATA P+ ++++ L L + SSF+RPN+ Y + K D+ A L + ++ +
Sbjct: 184 LTATADPETREEIARRLALGDARRFVSSFDRPNIRYRMVDK---DNPRAQLLAFIRDDHA 240
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
IVYCL R +E +A+L GI YHAG+ + R++ ++ V+VAT+A
Sbjct: 241 GEAGIVYCLSRRKVEETAAWLGEQGIRALPYHAGMAQETRAAHQSRFLREDGIVMVATIA 300
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFIL 374
FGMGID+ DVR V H ++P+S+E +YQE+GRAGRD L +++ + +G D +RRM
Sbjct: 301 FGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLAAQAWMAWGAQDVVQQRRM---- 356
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++S+ + F R R+ +V E +GCRR+ +L FGE C
Sbjct: 357 -IDESEGADEFKWRARAR------LDALVGLVETTGCRRQFLLAHFGEAGEAC 402
>gi|167765809|ref|ZP_02437862.1| hypothetical protein CLOSS21_00300 [Clostridium sp. SS2/1]
gi|167712526|gb|EDS23105.1| ATP-dependent DNA helicase RecQ [Clostridium sp. SS2/1]
Length = 625
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 168/417 (40%), Positives = 245/417 (58%), Gaps = 14/417 (3%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
KLL+ +FG+ +FR Q I+A L+G+D +MPTG GKS+C+QIPAL GI LV+SPL
Sbjct: 12 KLLKQYFGYDEFRQGQEQLIEAALNGQDVLGIMPTGAGKSLCFQIPALMMDGITLVISPL 71
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
I+LM++QV L + GI FL+S+ T Q T + + + +++YV PE T GF
Sbjct: 72 ISLMKDQVGTLNQAGIHAAFLNSSLTQGQYHTALKYAM---QGRYKIIYVAPERLETEGF 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP- 205
++ ++S ++++A+DEAHC+S WG DFRPSY K+ LP P+L A
Sbjct: 129 INF--ALNSGVKISMLAVDEAHCVSQWGQDFRPSYLKILEFLKKLPYRPVLTAYTATATA 186
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD----TCA 261
+V+ D+M+ L L++P VL + F+R NL+Y V+ D Y +L S LK + +
Sbjct: 187 EVRDDIMDILNLRDPFVLTTGFDRENLYYAVKRPR---DKYRELLSYLKEKEEKMPGSSG 243
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +E+ L G S YHAGL+D+ R +D+I RKQ++VAT AFGMG
Sbjct: 244 IIYCLSRKNVEEVCYQLREDGFSVTRYHAGLSDEERKENQEDFIYDRKQIMVATNAFGMG 303
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+N+PK+ME++YQE+GRAGRD P++ +LYY D R F++ +
Sbjct: 304 IDKPDVRFVVHYNMPKNMESYYQEAGRAGRDGEPAECILYYAPIDNRTNRFLIENGEENE 363
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTHRVVSF 438
T++ ++ QM YC C R IL FGEQ G + + + F
Sbjct: 364 ELDAITKQIVMERDWERLRQMTFYCYTKECLRHYILNYFGEQTSGYCGNCLNCLTEF 420
>gi|296089753|emb|CBI39572.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 173/423 (40%), Positives = 244/423 (57%), Gaps = 49/423 (11%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA +PG+ +VV PL++L+++
Sbjct: 168 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 227
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLD-------------------SGKPSLRL 133
Q+I L GI FLSS QT + ++L KPS +L
Sbjct: 228 QIITLNLNFGIPATFLSSQQTASQAAAVLKELRLLFPGICFQNCYLLLSFEVKDKPSCKL 287
Query: 134 LYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192
LYVTPE + F LK +H +G L +DEAHC+S WGHDFRP YR+L L+ P
Sbjct: 288 LYVTPERIAGNSTFFEILKSLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFP 347
Query: 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLD 243
DVP++ALTATA V+KD++ SL + + LVL++SF+R NL YEV K LL
Sbjct: 348 DVPVMALTATATQPVRKDILNSLRIPHALVLETSFDRSNLKYEVIGKTKEPLKQLGQLLK 407
Query: 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLD 302
D + +L C IVYCL ++ C E+S +L+ I YHAGL+ + R V
Sbjct: 408 DRFKNL----------CGIVYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQK 457
Query: 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
W + + ++ AT+AFGMGI++ +VR V H + KS+E +YQESGRAGRD LP+ + Y
Sbjct: 458 KWHTGKVHIICATIAFGMGINKPNVRFVIHNTMSKSIENYYQESGRAGRDDLPAVCMALY 517
Query: 363 GMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFG 421
D R+ +L S++F K++++ +M YCE + CRR+ +LE FG
Sbjct: 518 QKKDFSRVVCMLRNGHGCKSETF-------KEAMTQARKMQQYCELKTECRRQTLLEHFG 570
Query: 422 EQV 424
E +
Sbjct: 571 ESL 573
>gi|374597031|ref|ZP_09670035.1| ATP-dependent DNA helicase, RecQ family [Gillisia limnaea DSM
15749]
gi|373871670|gb|EHQ03668.1| ATP-dependent DNA helicase, RecQ family [Gillisia limnaea DSM
15749]
Length = 732
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 242/403 (60%), Gaps = 24/403 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ +FG +QF+ Q I ++++G + F +MPTGGGKS+CYQ+PAL G +VVS
Sbjct: 8 LHKQLKKYFGFSQFKGLQEQVITSIVNGHNTFVIMPTGGGKSLCYQLPALIAEGTAIVVS 67
Query: 86 PLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV ++ E G+A SS +V+ ++ ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDAIRGISSEHGVAHVLNSSLNKSEVR-QVKEDITNG--ITKLLYVAPESL 124
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L ++ + D +PI+ LT
Sbjct: 125 TKEENVEFLRSVK----ISFMAVDEAHCISEWGHDFRPEYRNLRTIIKRIGDNIPIIGLT 180
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNL+YE+R K + AD+ +K N
Sbjct: 181 ATATPKVQEDILKNLGIPDAKTFKASFNRPNLYYEIRPK--TKNVDADIIRFVKQNEGKS 238
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R +EL+ L GI YHAGL+ K R D +I VVVAT+AFGM
Sbjct: 239 GIIYCLSRKRVEELAQTLQVNGIKAVPYHAGLDPKTRIRHQDMFIMEDTDVVVATIAFGM 298
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 299 GIDKPDVRFVIHHDIPKSLESYYQETGRAGRDGGEGHCLAFYSYKDIEKLEKFMSGK--- 355
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ +++ ++V Y E S RR+ +L FGE+
Sbjct: 356 -----PVAEQEIGQAL--LQEVVGYAETSMSRRQFLLHYFGEE 391
>gi|317970046|ref|ZP_07971436.1| DNA helicase [Synechococcus sp. CB0205]
Length = 605
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 232/399 (58%), Gaps = 17/399 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++L+ FG+A FR Q ++ V+ G LMPTGGGKS+CYQ+PAL PG+ +V+SP
Sbjct: 10 LEVLQRVFGYASFRGPQEAIVRHVIGGGSGLVLMPTGGGKSLCYQVPALCSPGLAVVISP 69
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV L++ GIA L S +++ L G+ L LLYV+PE +
Sbjct: 70 LIALMQDQVEALQQLGIAAAALHSGLEAGESQRVWRQLSDGQ--LDLLYVSPERLLSGDL 127
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L L AIDEAHC+S WGHDFRP YR+L L P VP LALTATA P+
Sbjct: 128 LERLGSMP----LALFAIDEAHCVSQWGHDFRPEYRQLDQLAQRFPQVPRLALTATADPR 183
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
Q D+ E L LQ V +SF+RPN+ Y +R+K A L L + IVY
Sbjct: 184 TQLDIRERLQLQQGEVFLASFDRPNIRYLLRHKQ---SGNAQLLQFLAEHRGESGIVYAR 240
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R+ D ++ L A G YHAG++ +AR L + VVVAT+AFGMGID+ D
Sbjct: 241 SRSRVDRIATELKAAGFDAIGYHAGMDAEARREALQRFRLGSGVVVVATIAFGMGIDKPD 300
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++PKS+EA+YQE+GRAGRD LP+ + + +G D ++ + + + Q
Sbjct: 301 VRFVAHVDLPKSLEAYYQETGRAGRDGLPAVAWMAHGGGDIPQLRRFIDDSGASEEQKRI 360
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
R + ++ Y E SGCRR+ +L FGE++L
Sbjct: 361 ERGK--------LDALIAYSEASGCRRQVLLRHFGEELL 391
>gi|359395140|ref|ZP_09188193.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
gi|357972387|gb|EHJ94832.1| ATP-dependent DNA helicase recQ [Halomonas boliviensis LC1]
Length = 605
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 168/402 (41%), Positives = 241/402 (59%), Gaps = 18/402 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
EAL K+L+ FG+ +FR Q I+ V++G D LMPTGGGKS+CYQIPAL + G +V
Sbjct: 8 EAL-KVLQEVFGYDRFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIV 66
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPLIALM++QV LK+ G+ ++L+S+ ++ L +G+ L LLYV PE AT
Sbjct: 67 VSPLIALMQDQVAALKQNGVRADYLNSSLDYHEAVEVENRLRAGE--LDLLYVAPERLAT 124
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
++L+ + + + L AIDEAHC+S WGHDFRP YR+LS L P VP +ALTATA
Sbjct: 125 ----ARLQMLLEQTQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATA 180
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAI 262
+ D+ME L LQ + S F+RPN+ Y + A L ++ + D I
Sbjct: 181 DVPTRGDIMEHLQLQEAALYNSGFDRPNIRYHIAENQ--GKAKEQLLQFIREHHDGEAGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R +E +A+L G++ YHAGL + R ++ V+VAT+AFGMGI
Sbjct: 239 VYCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQHHQTRFLREDGVVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H N+PKS+EA+YQE+GRAGRD LP+ + + YG+ D I + ++S
Sbjct: 299 DKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQD-----VITLRQMQQDS 353
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ ++R ++ + M+ CE CRR+ +L FG+ +
Sbjct: 354 SAADQQKRIEQQKL---DAMLGLCEIISCRRQALLHYFGDHL 392
>gi|380513575|ref|ZP_09856982.1| DNA helicase superfamily II protein [Xanthomonas sacchari NCPPB
4393]
Length = 602
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 239/394 (60%), Gaps = 17/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL FG+ QFR Q + ++ V +G D LMPTGGGKS+CYQIP+L + G +V+SPLI
Sbjct: 8 LLSRVFGYDQFRGLQQNIVEHVAAGHDALVLMPTGGGKSLCYQIPSLLRDGTGIVISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L++ G+ E+L+ST + ++ L +G+ L LLYV PE TP F+S
Sbjct: 68 ALMQDQVEALRQLGVRAEYLNSTLDGETAQRVERALLAGE--LDLLYVAPERLLTPRFLS 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
++ R + L AIDEAHC+S WGHDFRP YR+L+ L P P +ALTATA P Q
Sbjct: 126 LIE----RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQTPRIALTATADPPTQ 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+++ E L L SSF+RPN+ Y V KD +A L L+A+ + IVYC+ R
Sbjct: 182 REIAERLDLAQARHFVSSFDRPNIRYTVVQKD---NARRQLLDFLRAHRGSAGIVYCMSR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E + +L+ G++ YHAGL + R+ ++ V+ AT+AFGMGID+ DVR
Sbjct: 239 RKVEETADFLAREGLNALPYHAGLPAEVRADNQRRFLREDGIVMCATIAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD +++ L YG+ D +L K + ++ R
Sbjct: 299 FVAHTDLPKSLEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLKQMIEQGEAGEER 353
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+R ++ + Q++ YCE CRR+ +L FGE
Sbjct: 354 KRVERRKL---DQLLGYCESMQCRRQVLLAGFGE 384
>gi|357627528|gb|EHJ77194.1| DNA helicase recq5 [Danaus plexippus]
Length = 1133
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 248/409 (60%), Gaps = 16/409 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVV-SPLIAL 90
FGH +F+ + Q A++A+ G D F MPTG GKS+C+Q+PA+ + V VV SPL+AL
Sbjct: 12 FGHRRFKSELQERAVRAIARGVHDVFVSMPTGSGKSLCFQLPAMLQENKVAVVFSPLLAL 71
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL 150
+++QV L + IA E ++S T + + ++ DL S KP+ R LYVTPE AT F + +
Sbjct: 72 IKDQVDHLTKLKIAAESINSKMTQKDRERVLNDLRSMKPNTRFLYVTPEQAATGTFKALM 131
Query: 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210
+ + ++ V +DEAHC+S WGHDFRP Y KL +LR +P +ALTATA+ +V KD
Sbjct: 132 EHLVKYKKVSYVVVDEAHCVSEWGHDFRPDYLKLGNLREKFKSIPWVALTATASAEVTKD 191
Query: 211 VMESLCLQNPLV-LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN----------GDT 259
++E+L L NP+ K+ R NL+Y+V Y++ + D DL LK N +
Sbjct: 192 ILENLKLLNPVAQYKTPSFRRNLYYDVVYQNCIQDEIGDLVEFLKKNLKDEISVKPKDKS 251
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
AIVYC R +++++ L+ G++C AYH GL R SV D W + V ATV+FG
Sbjct: 252 AAIVYCRTREQTEDIASMLTKRGLNCLAYHGGLKSSERVSVQDRWSNGEVPCVSATVSFG 311
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MG+D+ VR V H+ +P+++ A+YQESGRAGRD P+ +YY +R ++F+L K++
Sbjct: 312 MGVDKASVRAVVHWGLPQNVAAYYQESGRAGRDGKPAFCRIYYCRSERNAVDFLL-KSEI 370
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCV 428
S++ ++R K + F MV YCE CR K + FGE+V C+
Sbjct: 371 ARSKTPEQKQR-CKNAYKSFEVMVKYCEEVRCRHKIFADFFGEEVPQCI 418
>gi|365833970|ref|ZP_09375421.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
gi|364570619|gb|EHM48223.1| ATP-dependent DNA helicase RecQ [Hafnia alvei ATCC 51873]
Length = 612
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 239/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q I A ++GRDC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQTIINAAIAGRDCLVVMPTGGGKSLCYQIPALVMEGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G++ L+STQ + + ++Y SG +++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVSAACLNSTQNREQQQEVYAGCRSG--AIKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP Y L ++ PD+P++ALTATA
Sbjct: 133 DQLPHWNP----ALLAVDEAHCISQWGHDFRPEYSALGLIKQRFPDIPVIALTATADDAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D+ L L +PLV SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RNDIERLLSLNDPLVQVSSFDRPNIRYTLIEKFKPL-----DQLIRFVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G S AYHAGL+ + RSSV D + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGFSVGAYHAGLDHEHRSSVQDAFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++EA+YQE+GRAGRD LP++++L Y D + L + +
Sbjct: 304 NVRFVVHFDIPRNIEAYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPEGQQKEI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER +++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMNAFA------EAQTCRRLVLLNYFGE 391
>gi|254504232|ref|ZP_05116383.1| ATP-dependent DNA helicase RecQ [Labrenzia alexandrii DFL-11]
gi|222440303|gb|EEE46982.1| ATP-dependent DNA helicase RecQ [Labrenzia alexandrii DFL-11]
Length = 629
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 177/428 (41%), Positives = 251/428 (58%), Gaps = 26/428 (6%)
Query: 1 MKKSP-LAMQSTSQTQKN--KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCF 57
M SP LA + + Q P+ + + +L+ FG + FR KQ IQ+++ GRD
Sbjct: 1 MSASPALAAEEPNPIQATLAPPVTGEARPLAVLQKVFGFSDFRGKQQAVIQSLVDGRDAV 60
Query: 58 CLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117
L PTG GKS+CYQIPAL + G+ +VVSPLIALM++QV L G+ L+ST T +
Sbjct: 61 VLFPTGAGKSLCYQIPALCRRGVGIVVSPLIALMKDQVGALTAAGVNAAALNSTLTPGEQ 120
Query: 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177
+ +L G+ + LLYVTPE ++ F L + + L AIDEAHC+S WGHDF
Sbjct: 121 ADLRLELQRGQ--IDLLYVTPERLSSESFRKLLDTLD----IALFAIDEAHCVSQWGHDF 174
Query: 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 237
RP Y LS+L P VP +ALTATA P QKD+ L L V +SF+RPN+ YE+
Sbjct: 175 RPEYLSLSTLAERYPGVPRVALTATADPHTQKDIQARLKLDEAEVFSTSFDRPNIRYEIV 234
Query: 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
++ + L LK + C IVYCL R ++++ +L+A GI YHAGL + R
Sbjct: 235 ERN---NQRQQLLDFLKKHKGECGIVYCLSRAKVEDIAEWLNAKGIRALPYHAGLPAEQR 291
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
++ D ++ +VATVAFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD PS+
Sbjct: 292 AANQDAFLLEEDLCLVATVAFGMGIDKPDVRYVAHLDLPSSVEAYYQETGRAGRDGAPSE 351
Query: 358 SLLYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414
+ + YGM D RRRM +++ + + R ++K + ++ CE +GCRR+
Sbjct: 352 AFMAYGMADLVQRRRM---IAEGDAPDE---VKRAENAK-----LNALLGICETAGCRRQ 400
Query: 415 KILESFGE 422
+L FGE
Sbjct: 401 ALLAHFGE 408
>gi|47224193|emb|CAG13113.1| unnamed protein product [Tetraodon nigroviridis]
Length = 827
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 174/431 (40%), Positives = 243/431 (56%), Gaps = 42/431 (9%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
+ ++K+ FG QFR QL+AI A L G D F LMPTGGGKS+CYQ+PA PG+ +V
Sbjct: 17 QEMMKIFHKRFGLHQFRFNQLEAINATLGGEDTFVLMPTGGGKSLCYQLPACVSPGVTVV 76
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPL +L+ +Q+ L I LS + +IY L +P ++LLYVTPE ++A
Sbjct: 77 ISPLKSLIVDQIQKLTTLDIPATSLSGDLGDREAGRIYMQLSRKEPIVKLLYVTPEKVSA 136
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCIS--------------------------SWGHD 176
+ +S L+ ++ RGLL IDEAHC+S WGHD
Sbjct: 137 SNKLISALQNLYERGLLARFVIDEAHCVSQVCFQVYTQSAECVQTFTFNPPTLILQWGHD 196
Query: 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236
FRP Y+KL LR P VP++ALTATA P+VQKD+ L ++ P V SFNR NL Y V
Sbjct: 197 FRPDYKKLHELRKKFPQVPMMALTATATPRVQKDIHNQLNMRQPQVFTMSFNRTNLKYAV 256
Query: 237 ---RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293
+ K + +D + + K I+YCL R CD ++ L G+ +YHAGL
Sbjct: 257 LPKKPKKVDEDC---ISWIKKHYPRDSGIIYCLSRNDCDTMAESLQRAGLLALSYHAGLR 313
Query: 294 DKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352
D R V WI+ QV+ AT+AFGMGID+ DVR V H ++PKS+E +YQESGRAGRD
Sbjct: 314 DGEREYVQTKWINQDGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRD 373
Query: 353 QLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GC 411
S+ +L+Y D R++ I+S ++ + + +T ++ MV +CE + C
Sbjct: 374 GEISQCILFYSYTDVHRIKRIISMDREGDGHTKATH-------YNNLHSMVHFCENAMEC 426
Query: 412 RRKKILESFGE 422
RR ++L FGE
Sbjct: 427 RRIQLLAYFGE 437
>gi|338740621|ref|YP_004677583.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
gi|337761184|emb|CCB67017.1| ATP-dependent DNA helicase RecQ [Hyphomicrobium sp. MC1]
Length = 727
Score = 314 bits (804), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 175/428 (40%), Positives = 249/428 (58%), Gaps = 43/428 (10%)
Query: 5 PLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGG 64
PLA + SQ EA L FG+ FR Q D I+ +L G DC LMPTGG
Sbjct: 11 PLAPTTDSQM---------EAARATLENVFGYKGFRSHQSDIIRTMLGGGDCLALMPTGG 61
Query: 65 GKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124
GKS+CYQIPAL +PG +VVSPLIALM++QV L++ G+ FL+STQ + +I
Sbjct: 62 GKSLCYQIPALVRPGTGIVVSPLIALMQDQVDALRDLGVKAAFLNSTQDRATQDQIERQF 121
Query: 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184
+G L LLYV PE ++ L+ R + + AIDEAHC+S WGHDFRP YR+L
Sbjct: 122 AAG--GLDLLYVAPERLVQERTLNLLE----RSDIAIFAIDEAHCVSQWGHDFRPEYRQL 175
Query: 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD 244
L P+VP +ALTATA + ++D++ L L+N +SF+RPN+ Y +
Sbjct: 176 KILAQRFPNVPRVALTATADERTRQDIISELSLENAATFIASFDRPNIRYTI-------- 227
Query: 245 AYADLCSV---------LKANGDTCA-IVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294
A+L SV +++ T A IVYCL R + +E +A+LS+ G AYHAGL+
Sbjct: 228 --AELGSVSSRERLWQFIESEHPTDAGIVYCLSRKSVEETAAWLSSKGRKALAYHAGLDA 285
Query: 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R++ +++ ++VAT+AFGMGID+ DVR V H N+PKS+E++YQE+GRAGRD
Sbjct: 286 HLRAAAQSKFLTEDGLIIVATIAFGMGIDKPDVRFVAHLNLPKSIESYYQETGRAGRDGE 345
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414
+ + + YG D ++ + NQS+ S +F +R ++ ++M GCRR+
Sbjct: 346 AANAWMAYGFQDIVQLRQWI--NQSEGSDAFKKVQRQKLDALIGLAEM------PGCRRQ 397
Query: 415 KILESFGE 422
+L FGE
Sbjct: 398 ALLAYFGE 405
>gi|255932597|ref|XP_002557855.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582474|emb|CAP80660.1| Pc12g10330 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1511
Score = 314 bits (804), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 253/431 (58%), Gaps = 21/431 (4%)
Query: 3 KSPLAMQSTSQTQ--KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
K+P+ +S + N P ++ + K+L+ F FR QL+AI A L+G+D F LM
Sbjct: 612 KAPVPKKSPGHSAFWSNHPWSQE--VRKVLKERFHLRGFRPNQLEAIDATLAGKDTFILM 669
Query: 61 PTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
PTGGGKS+CYQ+P++ G+ +V+SPL++LME+QV L++ I ++ +
Sbjct: 670 PTGGGKSLCYQLPSVVTGGRTTGVTIVISPLLSLMEDQVSHLRKLNIKAFMVNGDTNPEE 729
Query: 117 KTKIYEDL-DSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174
K+ I L ++ + +LY+TPE L+ + + L+K+H R L + IDEAHC+S WG
Sbjct: 730 KSWIMSQLSNAAGEGMEVLYITPEMLSKSQALIRALEKLHGRNRLARLVIDEAHCVSQWG 789
Query: 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY 234
HDFRP Y++L +R P VP++ALTATA V+ DVM +L + + V SFNRPNL Y
Sbjct: 790 HDFRPDYKELGEVRARFPGVPVMALTATATENVKVDVMHNLKITDCEVFLQSFNRPNLTY 849
Query: 235 EVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGL 292
EVR K D+ A + + ++ + C I+YCL R TCD+++ L + AYHAG+
Sbjct: 850 EVRSKGKNDEVLASMAETITSSYQNQCGIIYCLSRKTCDKVAEDLQKKYHLKALAYHAGM 909
Query: 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352
+ K +S W R ++VAT+AFGMGID+ DVR V H +IPKS+E +YQE+GRAGRD
Sbjct: 910 SAKVKSEAQRKWQMGRVHIIVATIAFGMGIDKADVRFVMHHSIPKSLEGYYQETGRAGRD 969
Query: 353 QLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGC 411
S LY+G D ++ ++ Q ++ +K + +V YCE S C
Sbjct: 970 GKRSGCYLYFGYKDTATLKRMIDAGDGNGQQ------KARQKQM--LRNVVQYCENRSDC 1021
Query: 412 RRKKILESFGE 422
RR ++L F E
Sbjct: 1022 RRVQVLAYFAE 1032
>gi|397781220|ref|YP_006545693.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396939722|emb|CCJ36977.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 604
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 233/394 (59%), Gaps = 17/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L +FG+ F Q + I AVL+ RD +M TGGGKS+CYQ+PAL G+ +VVSPLI
Sbjct: 7 ILEKYFGYTSFLPHQEEIIDAVLAQRDVLAVMATGGGKSLCYQLPALVFGGLTVVVSPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV GL+ GI ++S+ + I + G+ +R+LYV+PE P F+S
Sbjct: 67 ALMKDQVDGLRANGIPAATINSSLGYGERRIIERVILEGR--IRVLYVSPERAVQPFFLS 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
LKK R L+AIDEAHCIS WGH+FRP YR+L L+ P VP++ALTATA P VQ
Sbjct: 125 LLKKADVR----LIAIDEAHCISMWGHNFRPEYRRLRVLKERFPAVPVIALTATAIPAVQ 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ + L L+NP SFNR NL Y V K + L L + D I+YC +
Sbjct: 181 DDIAKQLALKNPARFVGSFNRTNLTYRVVPKTRY---FPRLVRYLNEHRDDAGIIYCFSQ 237
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
++L+ L G S YHAGL D R + + ++ ATVAFGMGID+ DVR
Sbjct: 238 KATEDLAEKLRGKGFSALPYHAGLPDAVRDEHQEAFSHGDVGIICATVAFGMGIDKPDVR 297
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PK +E++YQE+GRAGRD P+ +L+Y D + +++ K + +TR
Sbjct: 298 FVIHTDLPKDLESYYQETGRAGRDGEPADCILFYSRGDYNTIRYLIEKECAD-----ATR 352
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ ++ + M+DYCE +GCRRK +L FGE
Sbjct: 353 KDAAYRKA---GAMLDYCETTGCRRKFLLTYFGE 383
>gi|377579442|ref|ZP_09808410.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
gi|377539235|dbj|GAB53575.1| ATP-dependent DNA helicase RecQ [Escherichia hermannii NBRC 105704]
Length = 609
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 172/404 (42%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I VL GRDC +MPTGGGKS+CYQIPAL K G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIINTVLDGRDCLVVMPTGGGKSLCYQIPALVKAGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQT + + +GK +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQTRDEQQAVMAGCRTGK--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L IH ++ +A+DEAHCIS WGHDFR Y L LR+ PDVP +ALTA
Sbjct: 127 MLDNFLDQL--IHWNPVM--LAVDEAHCISQWGHDFRREYALLGQLRDRFPDVPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADETTRRDIVNLLGLHDPLIQISSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R ++ +A L + GIS AAYHAGL + R++V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENDVRANVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPPGQLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|113971918|ref|YP_735711.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
gi|113886602|gb|ABI40654.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-4]
Length = 607
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 244/409 (59%), Gaps = 25/409 (6%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PL ++ A V FG+ FRD Q + I+ V SG DC +MPTGGGKS+CYQ+PAL
Sbjct: 10 DDPLSQRLAQV------FGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALL 63
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PGI +VVSPLI+LM++QV L + G+ +L+S+Q + ++ L G+ L+LLYV
Sbjct: 64 MPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGE--LKLLYV 121
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L+ P VP+
Sbjct: 122 SPERLLTADFIERMRSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPM 177
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA ++++ E L + NP L SSF+RPN+ Y V K L+ A +L+ N
Sbjct: 178 MALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRYTVAEK--LNAANQLRQFLLQQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G + IVYC R DE++ L+ G AYHAG+ + R V D ++ + +VVATV
Sbjct: 235 G-SSGIVYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATV 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D R+ ++ +
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQ 353
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
++ Q + M + E CRR+ +L F E L
Sbjct: 354 SEPGPQQQV---------DFHKLNTMAAFAEAQTCRRQVLLHYFDESAL 393
>gi|428184545|gb|EKX53400.1| hypothetical protein GUITHDRAFT_64555, partial [Guillardia theta
CCMP2712]
Length = 513
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 168/396 (42%), Positives = 237/396 (59%), Gaps = 18/396 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F + FR QL+ I A L+ +D F L+PTGGGKS+CYQ+PA+ PGI++V+SPL++LM++
Sbjct: 3 FNLSSFRPLQLEIINAFLAKKDVFVLLPTGGGKSLCYQLPAIIIPGIMVVISPLLSLMQD 62
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV L+ G+ LSS + + ++ + G L+LLYVTPE ++ + F+SKL++
Sbjct: 63 QVEQLRALGVECMMLSSATSKEEMREVLGAMTKGSCKLKLLYVTPERISKSRLFLSKLEQ 122
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H ++ IDEAHC S WGHDFRP Y KL LR P VPI+ALTATA KVQ+DV
Sbjct: 123 AHDMQRISSFVIDEAHCCSQWGHDFRPDYLKLGILRRQFPRVPIMALTATATDKVQEDVS 182
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD-DAYADLCSVLKAN-GDTCAIVYCLERTT 270
+ L ++ +V + S NRPNL Y V K D + SV+K N IVYCL R
Sbjct: 183 KMLGIERSVVFRGSVNRPNLVYRVEEKPYASKDVLTMILSVIKQNFSGKSGIVYCLSRRD 242
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
++++ +L+ G+ YHA L+D+ R+ V W ++VAT+AFGMGI++ DVR V
Sbjct: 243 AEDVAKFLAENGLRALPYHADLSDEYRTRVHQQWTKGIVHIMVATIAFGMGINKPDVRFV 302
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRER 390
H ++ KS+ A+YQESGR GRD + +LYY D R+ + S +R
Sbjct: 303 IHHSMSKSLAAYYQESGRGGRDGDRAVCILYYRPGDLTRLS------------TMSFHDR 350
Query: 391 SSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ K I + +V YCE S CRR+ IL FG+Q G
Sbjct: 351 NGLKGIYE---IVRYCEASSCRRQIILSHFGDQAAG 383
>gi|345885011|ref|ZP_08836404.1| ATP-dependent DNA helicase RecQ [Prevotella sp. C561]
gi|345042066|gb|EGW46174.1| ATP-dependent DNA helicase RecQ [Prevotella sp. C561]
Length = 727
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 169/409 (41%), Positives = 238/409 (58%), Gaps = 19/409 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L G+D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKHYFGFDKFKGDQEAIIRNLLDGKDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ +L+S+ ++ D+ SG+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGIAHYLNSSLKKGEIDQVRADIVSGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + P++ALTAT
Sbjct: 125 KEENVEFLKSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRCAIESIGTAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL +++ KSSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATDKVRTDIVRSLGIEDCAEFKSSFNRPNLYYEVRPKKSDDDTNKQIIKFIKQHAGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS DD++ ++VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAILKANDIKAAPYHAGLDSETRSKAQDDFLMEELDIIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD +++Y D ++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICIVFYSKKDLNKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASV 431
+ E+ + + + Y E S CRRK +L FGE C S+
Sbjct: 353 EGKPIAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGEDYPKCNCSM 399
>gi|206578880|ref|YP_002241119.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
gi|206567938|gb|ACI09714.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae 342]
Length = 608
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 247/404 (61%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ VL GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|196005803|ref|XP_002112768.1| hypothetical protein TRIADDRAFT_25695 [Trichoplax adhaerens]
gi|190584809|gb|EDV24878.1| hypothetical protein TRIADDRAFT_25695 [Trichoplax adhaerens]
Length = 388
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 227/367 (61%), Gaps = 14/367 (3%)
Query: 30 LRWHFGHAQFRD--KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
L+ FG+ F+ ++ I+ D F MPTGGGKS+CYQ+PA+ PG+ +V SPL
Sbjct: 15 LKTVFGYDSFKSPVQEKAVIEIAARKTDVFVSMPTGGGKSLCYQLPAILHPGVTVVFSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IAL+ +Q+ L+ GI + ++S + + +DL +P++RLLYVTPEL AT F
Sbjct: 75 IALIYDQIDHLQNVGICSKTINSKMAETDRNAVIKDLHDPEPTIRLLYVTPELAATSDFK 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
LK + R LN IDEAHC+S WGHDFRP YRKL +LR Y P VPI+ALTATA V
Sbjct: 135 RLLKHLFDRSRLNYFTIDEAHCVSHWGHDFRPDYRKLGNLREYFPSVPIIALTATANKTV 194
Query: 208 QKDVMESL-CLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL-----------KA 255
Q+DV++SL + +SS R NL+Y+V +KDLL DA +L + +
Sbjct: 195 QEDVIKSLHFRSSFQSFRSSCFRSNLYYDVIFKDLLTDALDNLRNFVLSSISGSIALNST 254
Query: 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315
+ C I+YC R CD +S L+ GISC +YHAGL+ K R + +W+ +V+VAT
Sbjct: 255 SSQGCGIIYCRTRDDCDNISDKLAGYGISCKSYHAGLSGKIREQIQREWMDGIVKVIVAT 314
Query: 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375
++FGMG+D+ VR V H+ +PKSME++YQESGRAGRD + LYY ++R ++++L
Sbjct: 315 ISFGMGVDKASVRFVAHWCLPKSMESYYQESGRAGRDGKLAFCRLYYSREERNVVQYLLK 374
Query: 376 KNQSKNS 382
K + S
Sbjct: 375 KEVKRQS 381
>gi|118590546|ref|ZP_01547948.1| probable atp-dependent dna helicase protein [Stappia aggregata IAM
12614]
gi|118437009|gb|EAV43648.1| probable atp-dependent dna helicase protein [Stappia aggregata IAM
12614]
Length = 629
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 239/397 (60%), Gaps = 23/397 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG++ FR KQ I+ ++ G+D L PTG GKS+CYQIPAL + G+ +VVSPLI
Sbjct: 32 VLQKVFGYSSFRGKQQAVIETLVDGKDAVVLFPTGAGKSLCYQIPALCRRGVGIVVSPLI 91
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L+ G+ ++ST + + + I L G+ + LLYVTPE T F
Sbjct: 92 ALMKDQVGALRAAGVQAAAINSTLSPEEQDSIRSALRRGE--IDLLYVTPERLGTENFRK 149
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + + L AIDEAHC+S WGHDFRP Y LS LR+ P VP +ALTATA P Q
Sbjct: 150 FLDTLQ----IALFAIDEAHCVSQWGHDFRPEYMSLSCLRDRYPGVPRVALTATADPHTQ 205
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
KD++ L +++ V +SF+RPN+ YE+ + + L LK + IVYCL R
Sbjct: 206 KDILARLQMEDASVFSTSFDRPNIRYEIVERT---NQRQQLLDFLKKHSGESGIVYCLSR 262
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
++++ +L++ GI YHAGL + RS+ D ++ +VATVAFGMGID+ DVR
Sbjct: 263 AKVEDIAEWLTSKGIRALPYHAGLPAEQRSANQDAFLLEEGLCLVATVAFGMGIDKPDVR 322
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKNSQSF 385
V H ++P S+EA+YQE+GRAGRD PS++ + YGM D RRRM +++ +
Sbjct: 323 YVAHLDLPSSVEAYYQETGRAGRDGAPSEAFMAYGMADLVQRRRM---IAEGDAP----- 374
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E + + + ++ CE +GCRR+ +L FGE
Sbjct: 375 ---EEVKRAENAKLNALLGICETAGCRRQALLAHFGE 408
>gi|302799268|ref|XP_002981393.1| hypothetical protein SELMODRAFT_10144 [Selaginella moellendorffii]
gi|300150933|gb|EFJ17581.1| hypothetical protein SELMODRAFT_10144 [Selaginella moellendorffii]
Length = 703
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 240/401 (59%), Gaps = 10/401 (2%)
Query: 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90
R +FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PA+ PG+ LVV PL++L
Sbjct: 29 RRYFGNKSFRPNQHEIINATMSGHDVFVLMPTGGGKSLTYQLPAICCPGVTLVVCPLVSL 88
Query: 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSK 149
+ +Q++ L + I E LSS + + +I + L+ RLLYVTPE A + +
Sbjct: 89 IMDQIMHLSQASIRAEHLSSNLEYEEQRQILQQLNFDHCEYRLLYVTPEKIARSDNLLRN 148
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ +H R LL + IDEAHC+S WGHDFRP Y+ L L+ DVP++ALTATA +V++
Sbjct: 149 LENLHRRRLLARIVIDEAHCVSQWGHDFRPDYQNLGILKQKFSDVPLMALTATATMRVKE 208
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLER 268
DV+++L L ++ + +FNRPNL Y V K Y ++ + +K N I+YC +
Sbjct: 209 DVVQALGLCKCIIFRQTFNRPNLRYSVVPK--TKKVYEEIDAFIKENYPRESGIIYCFSK 266
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C+ + L G YHA ++ + R+ V W ++ ATVAFGMGI++ DVR
Sbjct: 267 MDCERVCEQLRKTGHKIGFYHASMDPQERNRVQRMWSKDEINIICATVAFGMGINKPDVR 326
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSF 385
V H +IPKS+E ++QESGRAGRD LP+ +LYY D R++ +LS+ +Q+ +S+
Sbjct: 327 FVIHHSIPKSIEGYHQESGRAGRDNLPASCILYYSYSDYVRVKHLLSQGAVDQTSTGRSW 386
Query: 386 STRERSS--KKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
+ + ++ K + + +M YCE CRR L FGE+
Sbjct: 387 NNSDTANQMKTNFDNLQRMGAYCENEVDCRRSLQLGHFGEK 427
>gi|373501519|ref|ZP_09591870.1| ATP-dependent DNA helicase RecQ [Prevotella micans F0438]
gi|371948172|gb|EHO66059.1| ATP-dependent DNA helicase RecQ [Prevotella micans F0438]
Length = 727
Score = 313 bits (803), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 168/401 (41%), Positives = 239/401 (59%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ +Q IQ +L G + F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEYLKRYFGFDKFKGEQQAIIQNLLDGNNTFVLMPTGGGKSLCYQLPSLLMEGTAIVVS 66
Query: 86 PLIALMENQVIGL----KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
PLIALM+NQV + +E G+A SS + +++ ++ D+ SGK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEDGLAHYLNSSLKKLEID-RVKADISSGKT--KLLYVAPESL 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ LK + ++ AIDEAHCIS WGHDFRP YR++ + + PI+ALTA
Sbjct: 124 TKEENVEFLKTVK----ISFYAIDEAHCISEWGHDFRPEYRRIRFAIDEICKAPIIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA KV+ D+++SLC+ + KSSFNRPNL+YEVR K +D L ++ +
Sbjct: 180 TATDKVRTDIIKSLCIDDCKEFKSSFNRPNLYYEVRPKRSDEDTNRQLIRFIRQHAGKSG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+A L A I A YHAGL+ + RS D ++ V+VAT+AFGMG
Sbjct: 240 IIYCLSRRKVEELAAVLQANDIKAAPYHAGLDSETRSKTQDGFLMEEIDVIVATIAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+NIPKS+E +YQE+GRAGRD + +Y D ++++ K
Sbjct: 300 IDKPDVRFVIHYNIPKSLEGYYQETGRAGRDGEEGICITFYSQKDLKKLD--------KF 351
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ E+ + + + Y E S CRR+ +L FGE
Sbjct: 352 MEGKPVAEQEIGRQL--LHETEAYAESSVCRRRLLLHYFGE 390
>gi|304414091|ref|ZP_07395459.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
gi|304283305|gb|EFL91701.1| ATP-dependent DNA helicase [Candidatus Regiella insecticola LSR1]
Length = 629
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 164/405 (40%), Positives = 246/405 (60%), Gaps = 22/405 (5%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
+++++ ++LR FG+ QFR Q + I A+LSG+DC +MPTGGGKS+CYQIPAL G
Sbjct: 12 INQEQFTTEILRDVFGYQQFRPGQKEIIAAILSGQDCLVIMPTGGGKSLCYQIPALVMKG 71
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+ LVVSPLI+LM++QV L G+ L+S+QT Q ++++ + SGK ++LLY+ PE
Sbjct: 72 LTLVVSPLISLMKDQVDQLLAYGVTAACLNSSQTWQQQSEVIANCRSGK--IKLLYIAPE 129
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
F+ +L L+A+DEAHCIS WGHDFRP YR L+ L+ P +P++AL
Sbjct: 130 RLVAENFLQQLSFFSP----ALLAVDEAHCISQWGHDFRPEYRALNQLKLRFPHLPVIAL 185
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG 257
TATA + D++ L L +PL+ +SF+RPN+ Y + ++K + LC ++ G
Sbjct: 186 TATADEVTRADIIRLLNLHHPLIQINSFDRPNIRYTLIEKFKPV-----EQLCRLVGKQG 240
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC R + A L G+S AAYHAGL+ R+ V + + Q+VV+TVA
Sbjct: 241 AKSGIIYCNSRAKVESTVARLQNRGLSVAAYHAGLDSLVRAQVQEAFQRDDLQIVVSTVA 300
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ ++R V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L +
Sbjct: 301 FGMGINKPNIRFVIHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPSDMVWLRHCLEEK 360
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q+ ER ++ F+ E CRR +L FGE
Sbjct: 361 PVSEQQNI---ERHKLNAMGAFA------EAQTCRRLILLNYFGE 396
>gi|300917877|ref|ZP_07134511.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|432531614|ref|ZP_19768636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
gi|300414922|gb|EFJ98232.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 115-1]
gi|431066937|gb|ELD75555.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE234]
Length = 611
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 167/397 (42%), Positives = 241/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
RT ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRTKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|294673710|ref|YP_003574326.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
gi|294473219|gb|ADE82608.1| ATP-dependent DNA helicase RecQ [Prevotella ruminicola 23]
Length = 607
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 242/397 (60%), Gaps = 23/397 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR +FG++ FR Q + I+ V++G D LMPTGGGKS+CYQIPALA PGI +V+SPLI
Sbjct: 6 ILRQYFGYSSFRQNQEEIIRHVIAGNDALVLMPTGGGKSICYQIPALALPGITIVISPLI 65
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE--LTATPGF 146
+LM++QV L+ GI E L+S + T I +G+ ++LLY++PE L F
Sbjct: 66 SLMKDQVETLRSNGIEAEALNSGNDPTLDTVIRRKCLAGQ--IKLLYISPEKLLAEMDYF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M L+ ++L AIDEAHCIS WGHDFRP Y +L LR P+VP++ALTATA
Sbjct: 124 MQHLQ-------ISLFAIDEAHCISHWGHDFRPEYTQLGVLREKFPNVPMMALTATADKI 176
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D++ L L+N SSF+RPNL V+ + + + +KA + I+YCL
Sbjct: 177 TRQDILTQLKLRNAREFVSSFDRPNLSLSVKRGYKSAEKMHFILNFIKARPNDAGIIYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R T ++++A L GI+ AAYHAGL+ RS + + + + VV AT+AFGMGID+ +
Sbjct: 237 SRKTTEKVAADLRKKGINAAAYHAGLSSLERSQTQEQFKNDQLLVVCATIAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PKS+E+FYQE GRAGRD P+ ++L+Y + D ++ F+
Sbjct: 297 VRWVIHYNMPKSIESFYQEIGRAGRDGAPADTVLFYSLADIIQLT------------EFA 344
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ ++ +M +Y E + CRR+ +L F EQ
Sbjct: 345 RQSGQQDVNMDKLKRMQEYAESNVCRRRILLNYFSEQ 381
>gi|284006614|emb|CBA71875.1| ATP-dependent DNA helicase [Arsenophonus nasoniae]
Length = 608
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 169/397 (42%), Positives = 241/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I +L+ +DC +MPTGGGKS+CYQIPAL PG+ +VVSPL
Sbjct: 15 QVLQQIFGYQQFRPGQEQIINTILTKQDCLVVMPTGGGKSLCYQIPALILPGLTIVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + GI +L+S+QT Q + ++ E GK ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLSQYGIEASYLNSSQTGQQQKQVIEYCRQGK--IKLLYIAPERLVMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L K++ L+A+DEAHCIS WGHDFRP YR L LR +P++ALTATA
Sbjct: 133 DRLPKLNPV----LLAVDEAHCISQWGHDFRPEYRALGQLRRRFSQLPVIALTATADQTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L PLV SSF+RPN+ Y + +YK L L +K IVYC
Sbjct: 189 RNDIIHGLELCEPLVHISSFDRPNIRYTLVEKYKPL-----DQLWFFIKGQKGNSGIVYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R+ +E + L G+S AAYHAGL++ R+ V D + QVVVATVAFGMGI++
Sbjct: 244 NSRSKAEETAERLHKRGLSAAAYHAGLDNTQRAKVQDAFQKDDLQVVVATVAFGMGINKS 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+I +++E++YQE+GRAGRD L ++++L+Y D + L++ + Q
Sbjct: 304 NVRFVVHFDIARNIESYYQETGRAGRDGLAAEAILFYDPADLSWLRRCLAEKPAGQLQEI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++S F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMSAFA------EAQTCRRLVLLNYFGE 391
>gi|87303070|ref|ZP_01085868.1| putative ATP-dependent DNA helicase [Synechococcus sp. WH 5701]
gi|87282237|gb|EAQ74197.1| putative ATP-dependent DNA helicase [Synechococcus sp. WH 5701]
Length = 497
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 164/408 (40%), Positives = 243/408 (59%), Gaps = 10/408 (2%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++ L L+ HFG FR Q ++A+LSGRDC +MPTG GKS+C+Q+PAL + G+VL
Sbjct: 2 RDPLESELQRHFGWTAFRPGQRPVVEALLSGRDCLAVMPTGAGKSLCFQLPALVRDGLVL 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPL+ALM++QV L+ +GI L + + + L+ + LR+LY+ PE
Sbjct: 62 VVSPLVALMQDQVSQLQRRGIPAASLHQGLDLPSRRALLRRLEENR--LRVLYLAPERLQ 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
L+++ +G L +A+DEAHCIS+WGHDFRP YR+L LR+ P VP++AL+AT
Sbjct: 120 AEATRQLLEEVLEQGRLVALAVDEAHCISAWGHDFRPDYRRLGQLRSLCPGVPLVALSAT 179
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTC 260
AAP+V+ D++ L L+ PLV S RPNL Y + + + L VL+A
Sbjct: 180 AAPRVRADIIRLLQLRRPLVQVRSARRPNLSYAMERR-----PHDPLSLVLEALEQARGA 234
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
++Y R + + +A LSA G AYHAG++ ++R L+ + S + V+VATVAFGM
Sbjct: 235 VLIYARTRRSVEHWAARLSAAGREAIAYHAGMDPESRRLALEHFQESPQPVLVATVAFGM 294
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
G+DR DV LV H ++P S E + QESGRAGRD P++ L+ + DR + + + + +
Sbjct: 295 GVDRPDVGLVLHLDLPASAEGYLQESGRAGRDGHPARCLVLFDPADRLSLGWAMRASARQ 354
Query: 381 NSQSFSTRERSSKK-SISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
S +ER + + +M EGSGCR + +L++ GE V C
Sbjct: 355 MSPELQDQERPRRDIAQQQLRRMEAVAEGSGCREQALLQAVGELVPPC 402
>gi|225011808|ref|ZP_03702246.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-2A]
gi|225004311|gb|EEG42283.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-2A]
Length = 729
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 176/406 (43%), Positives = 243/406 (59%), Gaps = 30/406 (7%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ HFG + F+ Q I +L+ + F +MPTGGGKS+CYQ+PAL + G +VVS
Sbjct: 6 LKKALKKHFGFSTFKGLQESVITHMLNKENSFVIMPTGGGKSLCYQLPALMQEGTAIVVS 65
Query: 86 PLIALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
PLIALM+NQV ++ E GIA L+ T QVK+ D+ SG +LLYV P
Sbjct: 66 PLIALMKNQVDAIRGISSENGIAHVLNSSLNKTAVEQVKS----DIRSG--ITKLLYVAP 119
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPIL 197
E + + K + ++ +A+DEAHCIS WGHDFRP YR L ++ L +PI+
Sbjct: 120 ESLSKRENIDFFKSVK----ISFLAVDEAHCISEWGHDFRPEYRNLRAILEQLEQPIPII 175
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257
ALTATA PKVQ+DVM++L + + K+SFNRPNL+YEVR K D+ D+ +K N
Sbjct: 176 ALTATATPKVQEDVMKNLRISGARLFKASFNRPNLYYEVRPKTGQVDS--DIIRFIKQNS 233
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YCL R +EL+ L GI+ YHAGL+ K+R + D ++ V+VAT+A
Sbjct: 234 GKSGIIYCLSRKRVEELAQTLQVNGINALPYHAGLDSKSRVNNQDQFLKDDCDVIVATIA 293
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 294 FGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFMS-- 351
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + +E ++ + MV Y E S RRK IL FGE+
Sbjct: 352 ----GKPLAEQE----IGMALLADMVAYAETSLSRRKFILHYFGEE 389
>gi|251787844|ref|YP_003002565.1| ATP-dependent DNA helicase RecQ [Dickeya zeae Ech1591]
gi|247536465|gb|ACT05086.1| ATP-dependent DNA helicase RecQ [Dickeya zeae Ech1591]
Length = 599
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 170/398 (42%), Positives = 243/398 (61%), Gaps = 22/398 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ QFR Q I A +SGRDC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 4 MQVLRETFGYQQFRPGQQAIINAAVSGRDCLVIMPTGGGKSLCYQIPALVLDGLTLVVSP 63
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+ G+A L+STQ+ + + ++ G+ L+LLY+ PE T GF
Sbjct: 64 LISLMKDQVDQLQAYGVAAACLNSTQSREQQQAVFSACRRGE--LKLLYIAPERLTTDGF 121
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L ++ L+AIDEAHCIS WGHDFRP YR L ++ P +PI+ALTATA
Sbjct: 122 LDQLAHWNT----ALIAIDEAHCISQWGHDFRPEYRALGQIKQQFPALPIVALTATADET 177
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
++D+ L L++PL SSF+RPN+ Y + ++K L L ++ IVY
Sbjct: 178 TRQDIARLLDLRDPLTNISSFDRPNIRYTLVEKFKPL-----DQLWLFIQGQRGKSGIVY 232
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++L A L G+S AYHAGL + R+ V + ++ QVVVATVAFGMGI++
Sbjct: 233 CNSRAKVEDLCARLQNRGLSVGAYHAGLENDRRAQVQEAFLRDDLQVVVATVAFGMGINK 292
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP+++ L+Y D M ++ + K +
Sbjct: 293 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAALFYDPAD---MAWLRRCLEEKPAGM 349
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 350 QLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 381
>gi|288937759|ref|YP_003441818.1| ATP-dependent DNA helicase RecQ [Klebsiella variicola At-22]
gi|288892468|gb|ADC60786.1| ATP-dependent DNA helicase RecQ [Klebsiella variicola At-22]
Length = 608
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 247/404 (61%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ VL GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETVLEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPKIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENAVRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|430004767|emb|CCF20566.1| ATP-dependent DNA helicase recQ [Rhizobium sp.]
Length = 642
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 234/396 (59%), Gaps = 17/396 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR +G+ FR KQ I V+SG D L PTG GKS+C+Q+PAL + G+ +VVSP
Sbjct: 46 LAVLRHVYGYDSFRGKQAPVIDRVMSGGDAVVLFPTGAGKSLCFQVPALCRDGVGIVVSP 105
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM +QV L++ G+ L+S+ + +++ L+ G +L LLYVTPE TPGF
Sbjct: 106 LIALMRDQVEALRQLGVRAAALNSSLSPDEFSEVRRLLNQG--ALDLLYVTPERIVTPGF 163
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ I + L AIDEAHC+S WGHDFRP YR+L L + P VP +ALTATA P
Sbjct: 164 ----RDIVGSAKIALFAIDEAHCVSQWGHDFRPEYRELGQLADLFPGVPRMALTATADPH 219
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++E L L + V +SF+RPN+ YE+ +D L L + + IVYCL
Sbjct: 220 TRDDIIERLGLHSAEVFTTSFDRPNIAYEIVERD---QPRQQLLRFLSRHKGSSGIVYCL 276
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E + +L+ G+ YHAG++ R + D ++ +VATVAFGMGID+ +
Sbjct: 277 SRAKVEETADWLNEQGVRALGYHAGMDRAVRDANQDAFLKEEDLCLVATVAFGMGIDKPN 336
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P S+EA+YQE+GRAGRD LPS+ + YGM D + ++ QS +
Sbjct: 337 VRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMTDVIQRGRMIDGGQSSDEVKRV 396
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R + + ++ CE +GCRR+ IL FGE
Sbjct: 397 ERAK--------LNALLGICETAGCRRQAILAHFGE 424
>gi|429107085|ref|ZP_19168954.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
gi|426293808|emb|CCJ95067.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 681]
Length = 609
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 243/406 (59%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFMA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|404494034|ref|YP_006718140.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
gi|77546057|gb|ABA89619.1| ATP-dependent DNA helicase RecQ [Pelobacter carbinolicus DSM 2380]
Length = 596
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 159/397 (40%), Positives = 238/397 (59%), Gaps = 18/397 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L+ FG FR Q + + +L G+D F LMPTGGGKS+C+Q+PAL + G+ +VVSP
Sbjct: 6 LDILKRVFGFQSFRPLQEEIVARILDGQDAFVLMPTGGGKSLCFQLPALLRQGVGIVVSP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+ G+ + +S+ + ++ +L +G+ L LLY+ PE +PGF
Sbjct: 66 LISLMKDQVDALRASGVRAAYYNSSLGQKAARQVLAELHAGQ--LDLLYIAPERLMSPGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L+ + + L+AIDEAHCIS WGHDFRP Y +L LR P VP++ALTATA +
Sbjct: 124 LERLRDMD----VALIAIDEAHCISQWGHDFRPEYTQLGVLRRSFPGVPLVALTATADVQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
++D++ L L + +SF+RPN+ Y V K L L +G IVY L
Sbjct: 180 TRQDILSRLELDDDDCFVTSFDRPNIRYTVLEKH---QPARQLMKFLAGHGSEAGIVYAL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L G+S AAYHAGL D R V D+++ Q+VVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAKKLCDAGLSAAAYHAGLGDGERQRVQDEFLRDELQIVVATVAFGMGIDKSN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+++PK++E +YQE+GRAGRD L +++LL +G D ++ K +
Sbjct: 297 VRFVVHYDLPKNIEGYYQETGRAGRDGLAAEALLLFGYGDIALCRGLIEKGHN------- 349
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E ++ + + M + E CRR+ +L FGE
Sbjct: 350 --EEQNRIELHKLNAMASFAEALTCRRQVLLGYFGEH 384
>gi|188532380|ref|YP_001906177.1| ATP-dependent DNA helicase RecQ [Erwinia tasmaniensis Et1/99]
gi|188027422|emb|CAO95269.1| ATP-dependent DNA helicase [Erwinia tasmaniensis Et1/99]
Length = 610
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/403 (42%), Positives = 241/403 (59%), Gaps = 23/403 (5%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EAL ++LR FG+ QFR Q IQ L+GRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 9 NEALADQVLRDTFGYQQFRPGQQTIIQESLNGRDCLVVMPTGGGKSLCYQIPALVRQGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+A L+STQ + + + SGK +RLLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLANGVAAACLNSTQNREEQQNVMAGCRSGK--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTA
Sbjct: 127 MMDNFLEQLTHCNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D+ L L +PL+ SSF+RPN+ Y + ++K L ++
Sbjct: 183 TADDTTRNDIARLLQLDDPLIQVSSFDRPNIRYTLVEKFK-----PTEQLLRYVQDQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C I+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFG
Sbjct: 238 CGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNVHRARVQEAFQRDDLQIVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++LL Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALLLYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ER ++ F+ E CRR +L FGE
Sbjct: 355 KVQGPLLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|254361946|ref|ZP_04978077.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452745568|ref|ZP_21945402.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
gi|153093493|gb|EDN74473.1| ATP-dependent helicase RecQ [Mannheimia haemolytica PHL213]
gi|452086443|gb|EME02832.1| ATP-dependent DNA helicase RecQ [Mannheimia haemolytica serotype 6
str. H23]
Length = 599
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 242/399 (60%), Gaps = 22/399 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +L FG+ +FRD Q + I AVL RDC +M TGGGKS+CYQ+PAL GI LV+SP
Sbjct: 6 ISVLNNIFGYQKFRDGQEEVINAVLENRDCLVIMTTGGGKSLCYQVPALCLDGITLVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L GI +L+STQT++ + + + SG+ L+LLY++PE T GF
Sbjct: 66 LISLMKDQVDQLITNGIEAAYLNSTQTLEEQQLVEQKALSGQ--LKLLYLSPEKVMTQGF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ S ++ +A+DEAHC+S WGHDFRP Y L LRN P+VP++ALTATA
Sbjct: 124 FHFI----SLCKISFIAVDEAHCVSQWGHDFRPEYTLLGGLRNTFPNVPLMALTATADLT 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L +P + SF+RPN+ Y V ++K L L + IVY
Sbjct: 180 TRSDILHHLRLNSPHIYLGSFDRPNIRYTVQEKFKPL-----EQLIKFISKQQGKSGIVY 234
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R +E++ LSA IS YHAG++ + R V + + Q+VVAT+AFGMGI++
Sbjct: 235 CNSRKKVEEITEKLSARKISVMGYHAGMSFEQRERVQNAFQRDDIQIVVATIAFGMGINK 294
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ IL + ++
Sbjct: 295 SNVRFVVHFDLPRSIESYYQETGRAGRDDLPSEAVLFYDPSDYAWLQKILLEEPESEQRN 354
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
++ ++I DF+ E CRR +L FGE
Sbjct: 355 I---KQHKLQAIGDFA------ESQTCRRLVLLNYFGEH 384
>gi|265765824|ref|ZP_06093865.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
gi|263253492|gb|EEZ24957.1| ATP-dependent DNA helicase RecQ [Bacteroides sp. 2_1_16]
Length = 607
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/403 (39%), Positives = 240/403 (59%), Gaps = 19/403 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
++EK +++ L+ +FG+ FR Q + I ++S +D LMPTGGGKS+CYQ+PAL G
Sbjct: 1 MNEKYQMIQTLKTYFGYDSFRPLQEEIIHNLISKKDSLVLMPTGGGKSICYQLPALLMEG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L+ GI L+S+ + SG+ L+LLY++PE
Sbjct: 61 TAIVISPLISLMKDQVETLRANGIPAGALNSSNDETENANLRRACISGQ--LKLLYISPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+S+ + L+L A+DEAHCIS WGHDFRP Y ++ LRN P+VP++AL
Sbjct: 119 -----KLLSEADYLLRDMTLSLFAVDEAHCISQWGHDFRPEYARMGFLRNQFPNVPMIAL 173
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA ++D++ L L+ P + SSF+RPNL V+ + + + +
Sbjct: 174 TATADKITREDIIRQLQLRQPQIFISSFDRPNLSLSVKRGYQPKEKSKAIIDFITRHRGE 233
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVYC+ R+ + ++ L GI C YHAGL+ + R DD+I+ R +VV AT+AFG
Sbjct: 234 SGIVYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDETQDDFINDRIEVVCATIAFG 293
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ +VR V H+N+PKS+E+FYQE GRAGRD +PS ++L+Y + D +L+K
Sbjct: 294 MGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDL----ILLTK--- 346
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T ++ ++M Y E CRR+ +L FGE
Sbjct: 347 -----FATESNQQNINLEKLNRMQQYAESDICRRRILLSYFGE 384
>gi|313148719|ref|ZP_07810912.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
gi|313137486|gb|EFR54846.1| ATP-dependent DNA helicase [Bacteroides fragilis 3_1_12]
Length = 607
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/403 (39%), Positives = 240/403 (59%), Gaps = 19/403 (4%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
++EK +++ L+ +FG+ FR Q + I+ ++S RD LMPTGGGKS+CYQ+PAL G
Sbjct: 1 MNEKYQMIQTLKTYFGYDSFRPLQEEIIRNLMSKRDALVLMPTGGGKSICYQLPALLMEG 60
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L GI L+S+ + SGK L+LLY++PE
Sbjct: 61 TAIVISPLISLMKDQVESLCANGIPAGALNSSNDESENANLRRACISGK--LKLLYISPE 118
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+S+ + ++L A+DEAHCIS WGHDFRP Y ++ LR P+VP++AL
Sbjct: 119 -----KLLSEADYLLRDMTISLFAVDEAHCISQWGHDFRPEYARMGFLRTQFPNVPMIAL 173
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA ++D++ L L+ P + SSF+RPNL V+ + + + + D
Sbjct: 174 TATADKITREDIVRQLQLKQPEIFISSFDRPNLSLSVKRGYQPKEKSKAIVDFIARHRDE 233
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC+ R+ + ++ L GI C YHAGL+ + R DD+I+ R +VV AT+AFG
Sbjct: 234 SGIIYCMSRSKTETVAQMLQKHGIRCGVYHAGLSARQRDEAQDDFINDRIEVVCATIAFG 293
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ +VR V H+N+PKS+E+FYQE GRAGRD +PS ++L+Y + D +L+K
Sbjct: 294 MGIDKSNVRWVIHYNLPKSIESFYQEIGRAGRDGMPSDTILFYSLGDL----ILLTK--- 346
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
F+T ++ ++M Y E CRR+ +L FGE
Sbjct: 347 -----FATESNQQNINLEKLNRMQQYAEADICRRRILLSYFGE 384
>gi|46201335|ref|ZP_00055249.2| COG0514: Superfamily II DNA helicase [Magnetospirillum
magnetotacticum MS-1]
Length = 607
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/408 (40%), Positives = 243/408 (59%), Gaps = 28/408 (6%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
PLH +L+ FG FR +Q + I+ V+ G D LMPTG GKS+CYQ+PAL +
Sbjct: 4 PLH-------ILKTVFGFPAFRGQQEEVIRHVVEGGDALVLMPTGAGKSLCYQVPALCRD 56
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLIALM+NQV L + G+ L+S ++ I + +G+ L L+YV P
Sbjct: 57 GVAIVVSPLIALMQNQVEALNQLGVRAAALNSARSPDEARVIERRMQAGE--LDLVYVAP 114
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E PGF++ L+ + L AIDEAHC+S WGHDFRP Y +L+ L P VP +A
Sbjct: 115 ERLVLPGFLALLEDCR----IALFAIDEAHCVSQWGHDFRPEYLQLALLHERFPSVPRIA 170
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-- 256
LTATA +KD+ E L LQ + F+RPN+ Y + K+ +A L L+A
Sbjct: 171 LTATADGPTRKDIAERLNLQEGRQFIAGFDRPNIRYRIATKN---NAREQLARFLEAEHG 227
Query: 257 --GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
G IVYCL R +E +++L+ G + AYHAGL+ R++ ++ V+VA
Sbjct: 228 GPGAESGIVYCLSRAKVEETASWLAGKGYTALAYHAGLDQPVRAANQQRFLREEGIVMVA 287
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H ++PKS+EA+YQE+GRAGRD LP+ + + YG++D ++ +
Sbjct: 288 TIAFGMGIDKPDVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLEDVGKLGQFI 347
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ +Q+ ++Q R++ + ++ CE + CRR+ +LE FGE
Sbjct: 348 ASSQASDAQKRIERQK--------LNALLGLCETTRCRRQVLLEYFGE 387
>gi|344208534|ref|YP_004793675.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia JV3]
gi|343779896|gb|AEM52449.1| ATP-dependent DNA helicase RecQ [Stenotrophomonas maltophilia JV3]
Length = 601
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 167/406 (41%), Positives = 241/406 (59%), Gaps = 23/406 (5%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
++P H+ LL+ FG+ FR Q D ++ V +G D LMPTGGGKS+CYQ+PAL
Sbjct: 3 SRPAHD------LLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALL 56
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +V+SPLIALM++QV L++ G+ E+L+ST + ++ +L +G+ L +LYV
Sbjct: 57 RDGCGIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGE--LDMLYV 114
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE T F+S L SR + L AIDEAHC+S WGHDFRP YR+L+ L P +P
Sbjct: 115 APERLLTGRFLSLL----SRSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPR 170
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA P Q+++ E L LQ SSF+RPN+ Y V KD +A L L+ +
Sbjct: 171 IALTATADPPTQREIAERLDLQEARHFVSSFDRPNIRYTVVQKD---NARKQLTDFLRGH 227
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
IVYC+ R +E + +L G + YHAGL R++ ++ V+ AT+
Sbjct: 228 RGEAGIVYCMSRRKVEETAEFLCGQGFNALPYHAGLPPDVRANNQRRFLREDGIVMCATI 287
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H ++PKSME +YQE+GRAGRD +++ L YG+ D +L K
Sbjct: 288 AFGMGIDKPDVRFVAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGD-----VVLLK 342
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ S++ R++ + + ++ YCE CRR+ +L FGE
Sbjct: 343 QMIEQSEAGEERKQLER---AKLDHLLGYCESMQCRRQVLLAGFGE 385
>gi|336427847|ref|ZP_08607838.1| hypothetical protein HMPREF0994_03844 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336008596|gb|EGN38609.1| hypothetical protein HMPREF0994_03844 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 780
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/396 (39%), Positives = 231/396 (58%), Gaps = 10/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ +FG+ FR+ Q + I ++L GRD F +MPTG GKS+C+Q+PAL GI LV+SPL
Sbjct: 5 QILKQYFGYDSFREGQEELINSILEGRDTFGIMPTGSGKSLCFQVPALMMEGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV+ L + G+ FL+S+ + K G+ +++YV PE T F+
Sbjct: 65 ISLMKDQVMALNQAGVHAAFLNSSLSTNQYFKALSFAKEGR--YKIIYVAPERLLTESFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ ++++ IDE HC+S WG DFRPSY K+ LP P++ A TATA +
Sbjct: 123 ----EFAVNTQISMLTIDEVHCVSQWGQDFRPSYLKIVDFIKMLPQRPVISAFTATATKE 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V++D++ L L+ P + + ++RPNL+ +V+ D Y+ L + + D C IVYCL
Sbjct: 179 VREDIVNILELEAPFIATTGYDRPNLYLDVQSPK---DKYSALREFVSLHPDQCGIVYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+S L G S YHAGL+D R DD+I R Q+++AT AFGMGID+ +
Sbjct: 236 TRKLVEEVSMKLDRDGFSVTRYHAGLSDYERQKNQDDFIYDRAQIMIATNAFGMGIDKSN 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PKS+EA+YQE GR RD P LLYYG D + + NQ +
Sbjct: 296 VRFVIHYNMPKSIEAYYQEIGRCSRDGEPGVCLLYYGGQDVVTNQLFVDNNQENKELDYE 355
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
TRE ++ +M YC + C R IL FGE
Sbjct: 356 TREIVLERDRERLRKMTFYCFTNECLRDYILRYFGE 391
>gi|39996003|ref|NP_951954.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
gi|39982768|gb|AAR34227.1| ATP-dependent DNA helicase RecQ [Geobacter sulfurreducens PCA]
Length = 603
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 240/398 (60%), Gaps = 18/398 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+ +LR FG+ FR Q + + V G D F LMPTGGGKS+CYQIP+L +PG+ +V+SP
Sbjct: 6 LAVLRTVFGYRSFRPFQEEIVDRVARGGDTFVLMPTGGGKSLCYQIPSLVRPGVGIVISP 65
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+E G+A +ST + ++ L G+ L LLYV PE T F
Sbjct: 66 LISLMKDQVDALRENGVAAACYNSTLGERESRRVLARLHGGE--LDLLYVAPERLMTDAF 123
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L++I + L AIDEAHC+S WGHDFRP Y +L LR P VP++ALTATA +
Sbjct: 124 LERLREIP----IALFAIDEAHCVSQWGHDFRPEYVELGRLRGLFPTVPMIALTATADAQ 179
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
+ D++ L L++ + + F+RPN+ Y V K + L L IVYCL
Sbjct: 180 TRGDIVTRLGLRDAEMFVTGFDRPNIRYSVLEKQ---KPFRQLEEFLATRPREAGIVYCL 236
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E++ L A G+ AYHAGL D RS V + ++ +VVVATVAFGMGID+ +
Sbjct: 237 SRKRVEEVAEKLRAAGVEAGAYHAGLADAERSRVQEAFLRDDIRVVVATVAFGMGIDKPN 296
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+++PK++E++YQE+GRAGRD LP+++LL +G D +S++ ++ +
Sbjct: 297 VRFVVHYDLPKNIESYYQETGRAGRDGLPAEALLLFGYGD-----IPVSRSLIESGGN-- 349
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ + + MV + E CRR+ +L FGE++
Sbjct: 350 --PEQVRIELHKLNAMVGFAEALVCRRRALLGYFGERL 385
>gi|449301478|gb|EMC97489.1| hypothetical protein BAUCODRAFT_68274 [Baudoinia compniacensis UAMH
10762]
Length = 481
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/425 (40%), Positives = 241/425 (56%), Gaps = 30/425 (7%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR FG FR Q + I L GRD F T GKS+C+Q+PA+ GI +V+SPL+A
Sbjct: 16 LRKVFGKDSFRPVQREVITCSLEGRDVFLQAATSFGKSLCFQLPAVVDFGITIVISPLLA 75
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM NQ+ ++ GI ++ST K I +DL SG P +RLLYVTPE F
Sbjct: 76 LMNNQLASMQRAGIKVATINSTTKYTEKNAILDDLKSGHPRIRLLYVTPEYCELDYFRKA 135
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ +H + L +AIDEAHCIS WGHDFRPS++KL + P VP++ TATA +V+
Sbjct: 136 LRIVHEQCELARIAIDEAHCISEWGHDFRPSFKKLDFFKKEFPSVPMICCTATATQRVRD 195
Query: 210 DVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKA----------- 255
D++++L L + L L+S + +RPNL YEVR+K+ +D Y D + LKA
Sbjct: 196 DIVDTLAL-DRLRLRSFTMTTHRPNLHYEVRFKNDEEDHYHDFTNWLKACYNRRLNDPRR 254
Query: 256 ----------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
+ I+Y L R + L+A L A GI YHAGL + + L W+
Sbjct: 255 NLELTQRRERVTNVAGIIYTLFRKDTEALAARLCADGIGAKPYHAGLTTEQKDDHLAGWV 314
Query: 306 SSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363
++++ ++VAT AFGMGID+++VR V H+ IPKS E FYQE+GRAGRD + +LYY
Sbjct: 315 ANKEGYDIIVATTAFGMGIDKENVRFVIHWQIPKSFEGFYQEAGRAGRDAKAACCILYYS 374
Query: 364 MDDRRRMEFILSKNQSKN--SQSFSTRERSSKKSISDFSQMVDYCEGSG-CRRKKILESF 420
+DR R F+L + +N F+ + +S + ++ YCE G CR + I + F
Sbjct: 375 REDRDRAAFLLGRENERNLSGPGFARGKEASVQRAKSLQALISYCENVGACRHQLIAQYF 434
Query: 421 GEQVL 425
G+ L
Sbjct: 435 GDTTL 439
>gi|108864716|gb|ABA95537.2| ATP-dependent DNA helicase, RecQ family protein, expressed [Oryza
sativa Japonica Group]
gi|215701406|dbj|BAG92830.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 665
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 170/383 (44%), Positives = 231/383 (60%), Gaps = 22/383 (5%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110
+SGRD +M GGGKS+CYQ+PA+ GI LVVSPL++L+++QV+GL GI L+S
Sbjct: 1 MSGRDVLVIMAAGGGKSLCYQLPAVLHDGITLVVSPLLSLIQDQVMGLAALGIQAYMLAS 60
Query: 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169
T +V+ +Y+ LD G+ L++LYVTPE ++ + FMSKL+K H G L+L+AIDEAHC
Sbjct: 61 TTNKEVEKFVYKALDKGEGELKILYVTPEKISKSKRFMSKLEKCHHAGRLSLIAIDEAHC 120
Query: 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR 229
S WGHDFRP Y+ L L+ P VP++ALTATA KVQ D++E L + + S+ NR
Sbjct: 121 CSQWGHDFRPDYKNLGILKVQFPSVPMIALTATATNKVQIDLIEMLHIPRCVKFVSTINR 180
Query: 230 PNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285
PNLFY+V K ++ D A+ S N ++ IVYC R C++++ LS GI
Sbjct: 181 PNLFYKVFEKSPVGKVVIDEIANFISESYPNNES-GIVYCFSRKECEQVAKELSERGILA 239
Query: 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345
YHA ++ +R V W S+ QV+V TVAFGMGI++ DVR V H ++ KSME +YQE
Sbjct: 240 DYYHADMDVISREKVHMRWSKSKLQVIVGTVAFGMGINKPDVRFVIHHSLSKSMETYYQE 299
Query: 346 SGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDY 405
SGRAGRD LPS+ +LYY D R S E +++ D +V Y
Sbjct: 300 SGRAGRDGLPSECILYYRPGDVPR------------QSSMVFYENCGLQNLYD---IVRY 344
Query: 406 CEGS-GCRRKKILESFGEQVLGC 427
C+ CRR FGE C
Sbjct: 345 CQSKRSCRRGAFFRHFGEAAQDC 367
>gi|398793349|ref|ZP_10553767.1| ATP-dependent DNA helicase RecQ [Pantoea sp. YR343]
gi|398210961|gb|EJM97590.1| ATP-dependent DNA helicase RecQ [Pantoea sp. YR343]
Length = 608
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 240/395 (60%), Gaps = 18/395 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I+ LSGRDC +MPTGGGKS+CYQIPAL + G+ LVVSPL
Sbjct: 15 QVLQDTFGYQQFRPGQQNIIETALSGRDCLVVMPTGGGKSLCYQIPALVREGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQT + + +++ D +GK L+LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQTREQQQQVFADCRTGK--LKLLYIAPERLMMDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + + ++A+DEAHCIS WGHDFRP Y + LR + PD+P++ALTATA
Sbjct: 133 DSLHQWNP----VMLAVDEAHCISQWGHDFRPEYGSIGQLRQHFPDLPVMALTATADETT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ L + +PL+ SSF+RPN+ Y + K L ++ I+YC
Sbjct: 189 RNDIAHLLQMDDPLIQISSFDRPNIRYTLVEK---FKPTEQLLRYVQDQRGKSGIIYCNS 245
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R ++ +A L + G+S AYHAG++ R+SV + + Q+VVATVAFGMGI++ +V
Sbjct: 246 RAKVEDTAARLQSRGLSVGAYHAGIDSAQRASVQEAFQRDDLQIVVATVAFGMGINKPNV 305
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y D M ++ + K
Sbjct: 306 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPAD---MAWLRKCLEEKVPGPLQD 362
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 IERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|189499066|ref|YP_001958536.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides BS1]
gi|189494507|gb|ACE03055.1| ATP-dependent DNA helicase RecQ [Chlorobium phaeobacteroides BS1]
Length = 674
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 251/409 (61%), Gaps = 19/409 (4%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
+ +P+ +K AL L FG FR Q + ++A+L GRD F +MPTGGGKS+CYQ+P
Sbjct: 57 NEPRQPVPDK-ALFDTLHKVFGFHSFRPNQENIVRAILDGRDVFAVMPTGGGKSLCYQLP 115
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
A+ G +V+SPLIALM++QV G + GI +L+S+ + + + + ++L S SL L
Sbjct: 116 AVLLSGTCVVISPLIALMKDQVDGARANGIRAAYLNSSLSPEEQASVQQELLSD--SLDL 173
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV PE F L +++ +++ +DEAHCIS WGHDFRP Y LS+L P
Sbjct: 174 LYVAPERFRLEHFQKLLGEVN----ISMAVVDEAHCISEWGHDFRPDYLLLSALVQLFPG 229
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
VP+ A TATA KVQ+D++ L L++PL++++SF+R NLFY++R+K ++A A L S+L
Sbjct: 230 VPVAAFTATATLKVQQDILHKLSLRDPLLVRASFDRSNLFYDIRFK---ENANAQLVSIL 286
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
K+N I+Y R + +E +A L A G YHAGL+D+ R + +I ++V
Sbjct: 287 KSNPGQAGIIYRTSRKSVNETAALLKAKGFRALPYHAGLSDEERQRNQEAFIRDEADIIV 346
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT+AFGMGID+ ++RLV H ++PKS+E++YQE+GRAGRD P++ L + D ++ F
Sbjct: 347 ATIAFGMGIDKSNIRLVIHADLPKSIESYYQETGRAGRDGEPARCTLLFSQSDIPKIRFF 406
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ E K++S +++ + S CRRK +L+ F E
Sbjct: 407 IDT---------IVDETERGKALSSLQKVISFVSTSVCRRKTLLDYFDE 446
>gi|258647142|ref|ZP_05734611.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
gi|260853106|gb|EEX72975.1| ATP-dependent DNA helicase RecQ [Prevotella tannerae ATCC 51259]
Length = 726
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 240/401 (59%), Gaps = 28/401 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
KLL + FG F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G+ +++SPL
Sbjct: 10 KLLSY-FGFDSFKSNQEAIIRTLLNGEDVFVLMPTGGGKSLCYQLPSLLMDGVAIIISPL 68
Query: 88 IALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
IALM+NQV ++ + GIA F++S+ T ++ +D+ +GK +LLYV PE
Sbjct: 69 IALMKNQVDAIRHTSEDDGIA-HFINSSLTKGAIDQVKDDIRTGKT--KLLYVAPESLTK 125
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ L+ + ++ AIDEAHCIS WGHDFRP YRK+ + + + PI+ALTATA
Sbjct: 126 REQVEFLQSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRPIIDEIGRAPIIALTATA 181
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
KV+ D+ ++L + N KSSFNRPNL+YEVR K D D+ + + N I+
Sbjct: 182 TDKVRLDIKKNLGILNAKEFKSSFNRPNLYYEVRSK--TKDIDKDIITYIHHNKGKSGII 239
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +EL+ L A I AAYHAG++ + RS DD++ ++VAT+AFGMGID
Sbjct: 240 YCLSRKKVEELAEVLRANNIKAAAYHAGMDPQTRSQTQDDFLMESIDIIVATIAFGMGID 299
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H++IPKS+E +YQE+GRAGRD L +Y DD +++E
Sbjct: 300 KPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGVCLAFYSPDDLKKLE------------ 347
Query: 384 SFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGE 422
F + +++ I + Y E S CRRK +L FGE
Sbjct: 348 KFMEGKPLAEQEIGRLLLKETAAYAESSVCRRKMLLHYFGE 388
>gi|338989469|ref|ZP_08634307.1| ATP-dependent DNA helicase RecQ [Acidiphilium sp. PM]
gi|338205598|gb|EGO93896.1| ATP-dependent DNA helicase RecQ [Acidiphilium sp. PM]
Length = 610
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/398 (39%), Positives = 233/398 (58%), Gaps = 17/398 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FGH FR Q D + V++G D LMPTGGGKS+CYQ+PA+ + G+ +VVSPLI
Sbjct: 20 VLRRVFGHDGFRGPQRDIVTHVIAGHDALVLMPTGGGKSICYQLPAICRQGVGIVVSPLI 79
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM NQV L++ G+ +S+ + + L +G+ L LLYV PE T F++
Sbjct: 80 ALMRNQVEALRQLGVRAAAFNSSLEAAERATVLRALRAGE--LDLLYVAPERLVTEDFLA 137
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + + L AIDEAHC+S WGHDFRP Y +L+++ P VP +ALTATA P+ +
Sbjct: 138 LLGSVR----IALFAIDEAHCVSQWGHDFRPEYLQLATIGERFPGVPRIALTATADPQTR 193
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ L L + SSF+RPNL Y + K + L + L+ + C IVYCL R
Sbjct: 194 DDIARRLGLDGARLFISSFDRPNLTYAIAPKI---EPRRQLLAFLRGHEGECGIVYCLSR 250
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E +++L+ G+ YHAGL+ R+ D ++ ++VAT+AFGMGID+ D+R
Sbjct: 251 AAVEETASWLAGQGLRALPYHAGLDAATRNRNQDAFLGEDGLILVATIAFGMGIDKPDIR 310
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++P S+EA+YQE+GRAGRD P+++L+ YGM D ++ ++ + + R
Sbjct: 311 FVAHLDLPSSLEAYYQETGRAGRDGAPAETLMLYGMQDVALRGRLIDQSDAPDEVKRIAR 370
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ CE +GCRR+ +L FGE G
Sbjct: 371 --------AKLGALLGVCETAGCRRRAVLAHFGETYPG 400
>gi|190348308|gb|EDK40739.2| hypothetical protein PGUG_04837 [Meyerozyma guilliermondii ATCC
6260]
Length = 1176
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/452 (36%), Positives = 260/452 (57%), Gaps = 36/452 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLVV 84
+L+ F + FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PAL G +V+
Sbjct: 511 ILQSTFNLSSFRPNQLEAVTATLQGKDTFVLMPTGGGKSLCYQLPALVTSGRTRGTTIVI 570
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TAT 143
SPLI+LM++QV L +K I +SS T + + E SG+ L L+Y++PE+ A+
Sbjct: 571 SPLISLMQDQVQHLLDKNIRAGMVSSKGTASERKQTVELFRSGQ--LDLVYLSPEMVNAS 628
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203
+ + +++S L + +DEAHC+SSWGHDFRP Y+ ++ + P++P++ALTATA
Sbjct: 629 SQIQNIISRLNSNQQLARIVVDEAHCVSSWGHDFRPDYKGMNMFKQQYPNIPLMALTATA 688
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCS--VLKANGDTCA 261
KV+ D++ L + P++LK SFNR NLFYE++ K+ Y + ++
Sbjct: 689 NEKVRMDIIHHLNMTEPVLLKQSFNRTNLFYEIKRKN---GNYLEWIRDYIVAKYAHNTG 745
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YC + +C++ S L+ G+ + YHAG+ R + W +++ AT+AFGMG
Sbjct: 746 IIYCHSKQSCEQTSEKLNMWGLKTSFYHAGMGPTERFDIQKKWQDGSVKIICATIAFGMG 805
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H IP+S+E +YQE+GRAGRD PS+ +++Y D R ++ ++ ++
Sbjct: 806 IDKPDVRFVIHLFIPRSLEGYYQETGRAGRDGKPSECIMFYSYKDARSLQSMIQRD---- 861
Query: 382 SQSFSTRERSSKKS-ISDFSQMVDYCEG-SGCRRKKILESFGEQV--LGC---------- 427
S +R S+++ ++ Q+V YCE + CRRK++L F E L C
Sbjct: 862 ----SDLDRESRENHLNKLRQVVQYCENTTDCRRKQVLHYFNEHFDPLQCSKKCDNCANS 917
Query: 428 --VASVTHRVVSFISPFILLISSSKTDTCIIM 457
V SV + F I L+S + D ++
Sbjct: 918 DTVTSVERDITLFAKDIISLVSEIQRDKVTVL 949
>gi|147783250|emb|CAN73069.1| hypothetical protein VITISV_005845 [Vitis vinifera]
Length = 1640
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/386 (42%), Positives = 232/386 (60%), Gaps = 29/386 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A ++ RDCF LMPTGGGKS+CYQ+PA +PG+ +VV PL++L+++
Sbjct: 315 FGNRTFRPLQHQACKASVTKRDCFVLMPTGGGKSLCYQLPATLQPGVTVVVCPLLSLIQD 374
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q+I L GI FLSS QT + ++L KPS +LLYVTPE + F LK
Sbjct: 375 QIITLNLNFGIPATFLSSQQTASQAAAVLKELRKDKPSCKLLYVTPERIAGNSTFFEILK 434
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+H +G L +DEAHC+S WGHDFRP YR+L L+ PDVP++ALTATA V+KD+
Sbjct: 435 SLHWKGQLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPDVPVMALTATATQPVRKDI 494
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEVRYK---------DLLDDAYADLCSVLKANGDTCAI 262
+ SL + + LVL++SF+R NL YEV K LL D + +L C I
Sbjct: 495 LNSLRIPHALVLETSFDRSNLKYEVIGKTKEPLKQLGQLLKDRFKNL----------CGI 544
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL ++ C E+S +L+ I YHAGL+ + R V W + + ++ AT+AFGMG
Sbjct: 545 VYCLSKSECAEVSKFLNGKCKIKTVYYHAGLSARQRIDVQKKWHTGKVHIICATIAFGMG 604
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
I++ +VR V H + KS+E +YQESGRAGRD LP+ + Y D R+ +L
Sbjct: 605 INKPNVRFVIHNTMSKSIENYYQESGRAGRDDLPAVCMALYQKKDFSRVVCMLRNGHGCK 664
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE 407
S++F K++++ +M YCE
Sbjct: 665 SETF-------KEAMTQARKMQQYCE 683
>gi|347536771|ref|YP_004844196.1| ATP-dependent DNA helicase RecQ [Flavobacterium branchiophilum
FL-15]
gi|345529929|emb|CCB69959.1| ATP-dependent DNA helicase RecQ1 [Flavobacterium branchiophilum
FL-15]
Length = 731
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/404 (43%), Positives = 245/404 (60%), Gaps = 31/404 (7%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K L+ +FG +QF+ Q I+++L+ + F +MPTGGGKS+CYQ+PAL G +VVSPL
Sbjct: 10 KELKKYFGFSQFKGLQEQVIRSLLAKNNTFVIMPTGGGKSLCYQLPALMLEGTAIVVSPL 69
Query: 88 IALMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
IALM+NQV ++ E G+A L+ T+ QVK+ D+ +GK +LLYV PE
Sbjct: 70 IALMKNQVDAIRSLSSEVGVAHVLNSSLNKTEIAQVKS----DIVAGKT--KLLYVAPES 123
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
++S L+ + L+ VAIDEAHCIS WGHDFRP YR L ++ L DVPI+ LT
Sbjct: 124 LTKEEYVSFLQTVP----LSFVAIDEAHCISEWGHDFRPEYRNLKNIIKQLSDVPIIGLT 179
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTC 260
ATA PKVQ+D++++L + + K+SFNRPNLFYEVR K + +D+ +K N
Sbjct: 180 ATATPKVQEDILKNLDMPDAKTFKASFNRPNLFYEVRTK--TKNIESDIIRFIKQNKGKS 237
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YCL R + ++ L GIS YHAGL+ K R+ D ++ +VVVAT+AFGM
Sbjct: 238 GIIYCLSRKKVESIAEVLKVNGISAVPYHAGLDAKTRAKHQDMFLMEDVEVVVATIAFGM 297
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQS 379
GID+ DVR V H +IPKS+E++YQE+GR GRD L YY D ++E F+ K +
Sbjct: 298 GIDKPDVRFVIHHDIPKSLESYYQETGRGGRDGGEGHCLAYYSYKDVEKLEKFLTGKPVA 357
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ F+ ++V Y E S RRK +L FGE+
Sbjct: 358 EQEIGFAL-----------LQEVVAYAETSMSRRKFLLHYFGEE 390
>gi|327312566|ref|YP_004328003.1| ATP-dependent DNA helicase RecQ [Prevotella denticola F0289]
gi|326944958|gb|AEA20843.1| ATP-dependent DNA helicase RecQ [Prevotella denticola F0289]
Length = 727
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/396 (41%), Positives = 235/396 (59%), Gaps = 19/396 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVSPLIA
Sbjct: 11 LKHYFGFDKFKGDQEAIIRNLLAGHDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVSPLIA 70
Query: 90 LMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LM+NQV G+ E+ +L+S+ ++ D+ SG +LLYV PE
Sbjct: 71 LMKNQVDVINGISEEDGVAHYLNSSLKKAEVDQVRADIVSG--HTKLLYVAPESLNKEEN 128
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
++ L+ + ++ AIDEAHCIS WGHDFRP YRK+ + + P++ALTATA K
Sbjct: 129 IAFLRSVK----ISFYAIDEAHCISEWGHDFRPEYRKIRHAIDAIGVAPVIALTATATDK 184
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V+ D++ SL +++ + KSSFNRPNL+YEVR K DD + +K + I+YCL
Sbjct: 185 VRTDIVRSLGIEDCVEFKSSFNRPNLYYEVRAKKSDDDTDRQIIKFIKQHAGKSGIIYCL 244
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +EL+A L A I A YHAGL+ + RS DD++ V+VAT+AFGMGID+ D
Sbjct: 245 SRKKVEELAAVLQANDIKAAPYHAGLDSETRSRTQDDFLMEELDVIVATIAFGMGIDKPD 304
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H++IPKS+E +YQE+GRAGRD +++Y D ++E K +
Sbjct: 305 VRFVIHYDIPKSLEGYYQETGRAGRDGEEGLCIVFYSKKDLNKLE--------KFMEGKP 356
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
E+ + + + Y E S CRRK +L FGE
Sbjct: 357 VAEQDIGRQL--LQETEAYAESSVCRRKMLLHYFGE 390
>gi|120436098|ref|YP_861784.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
gi|117578248|emb|CAL66717.1| ATP-dependent DNA helicase RecQ [Gramella forsetii KT0803]
Length = 702
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/401 (41%), Positives = 240/401 (59%), Gaps = 24/401 (5%)
Query: 23 KEA-LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEA L L+ +FG+ FR Q I +V G+D +MPTGGGKS+CYQ+PA+ P I
Sbjct: 2 KEAVLFDTLKEYFGYENFRPLQKKIINSVFEGQDNLVIMPTGGGKSICYQLPAILLPEIT 61
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLIALM++QV GL G+ +L+S+Q K I++ +D+ ++LLYV PE
Sbjct: 62 LVISPLIALMKDQVDGLNANGVPAAYLNSSQEEADKQAIFQKIDN--KEIKLLYVAPE-- 117
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ F+ +L G ++L+AIDEAHCISSWGHDFRP+Y +L L+N P PILALTA
Sbjct: 118 -SLQFVDRL---LVDGKVSLIAIDEAHCISSWGHDFRPAYTQLGYLKNRFPSTPILALTA 173
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA + D+ + L + +SF+R NL EV+ + + L+
Sbjct: 174 TADKATRNDICKQLNVPKAKKHIASFDRKNLSLEVKPG---IKRFEQISQFLRNRQSESG 230
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R T +EL++ L G AYHAG++ RS + DD+I+ KQ++ AT+AFGMG
Sbjct: 231 IIYCLSRKTTEELASKLKRKGFKAEAYHAGIDHLNRSKIQDDFINDEKQIICATIAFGMG 290
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ ++R V H+N+PK++E +YQE GRAGRD L S +LL++ D ++
Sbjct: 291 IDKSNIRWVIHYNMPKNLEGYYQEIGRAGRDGLASDTLLFHSYADVIQL----------- 339
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q F++ ++ + ++ +M Y E CRRK +L FGE
Sbjct: 340 -QKFASNAKNEEVQLAKLDRMKQYSEALSCRRKILLGYFGE 379
>gi|282860206|ref|ZP_06269280.1| ATP-dependent DNA helicase RecQ [Prevotella bivia JCVIHMP010]
gi|424899672|ref|ZP_18323214.1| ATP-dependent DNA helicase RecQ [Prevotella bivia DSM 20514]
gi|282587027|gb|EFB92258.1| ATP-dependent DNA helicase RecQ [Prevotella bivia JCVIHMP010]
gi|388591872|gb|EIM32111.1| ATP-dependent DNA helicase RecQ [Prevotella bivia DSM 20514]
Length = 727
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/401 (42%), Positives = 235/401 (58%), Gaps = 19/401 (4%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L+ +FG F+ +Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LIDNLKHYFGFDNFKGEQEAIIRHLLAGYDAFVLMPTGGGKSLCYQLPSLIMEGTAVVVS 66
Query: 86 PLIALMENQV---IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E +L+S+ K+ D+ GK +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEGDGVAHYLNSSLKKAEVDKVRTDIREGKT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK + ++ AIDEAHCIS WGHDFRP YRK+ + + PI+ALTAT
Sbjct: 125 KEDNIEFLKTVK----VSFYAIDEAHCISEWGHDFRPEYRKIRNAIEVIGRAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D++ SL ++ +SSFNRPNL+YEVR K DD + +K + I
Sbjct: 181 ATAKVRTDIVRSLGIEGCAEFRSSFNRPNLYYEVRPKKSEDDTNKQIIRFIKQHTGKSGI 240
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ + RS D ++ V+VAT+AFGMGI
Sbjct: 241 IYCLSRKKVEELAAVLLANDIKAAPYHAGLDSEVRSKTQDQFLMEDIDVIVATIAFGMGI 300
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD L++Y +D +++E K
Sbjct: 301 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGEEGICLVFYSRNDLKKLE--------KFM 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 353 EGKPIAEQDIGRQL--LQETEAYAESSVCRRKLLLHYFGEE 391
>gi|225010696|ref|ZP_03701166.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-3C]
gi|225005249|gb|EEG43201.1| ATP-dependent DNA helicase, RecQ family [Flavobacteria bacterium
MS024-3C]
Length = 647
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 239/403 (59%), Gaps = 34/403 (8%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG ++F+ +Q I+ VL+ + F +MPTGGGKSMCYQ+PAL + G +VVSPLIA
Sbjct: 12 LKQYFGFSEFKGRQEAVIKNVLAKKHSFVIMPTGGGKSMCYQLPALLQEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
LM+NQV ++ G+A L+ T+ QVK+ + + +LLYV PE
Sbjct: 72 LMKNQVDAIRGVSANPGVAHVLNSSLTKTEIKQVKSDVVNGI------TKLLYVAPESLT 125
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTA 201
++ L + ++ VA+DEAHCIS WGHDFRP YR L + + + ++PI+ LTA
Sbjct: 126 KEENVAFLNTV----TVSFVAVDEAHCISEWGHDFRPEYRNLQRIIDRVGANIPIIGLTA 181
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
TA PKVQ+D++++L + + V KSSFNRPNLFYEVR K + AD+ +K +
Sbjct: 182 TATPKVQEDIIKNLGITDATVFKSSFNRPNLFYEVRPK--TQNVEADIIRFVKQHVGKSG 239
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+YCL R +EL+ L G+S YHAG + K RS D ++ VVVAT+AFGMG
Sbjct: 240 IIYCLSRKKVEELAQILQVNGVSAVPYHAGFDTKTRSKYQDMFLMEEVDVVVATIAFGMG 299
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E
Sbjct: 300 IDKPDVRYVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLE---------- 349
Query: 382 SQSFSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGE 422
F + +++ I + ++V + E S RRK IL FGE
Sbjct: 350 --KFMAGKPVAEQEIGNALLQEIVGFAETSISRRKFILHYFGE 390
>gi|390343347|ref|XP_786769.3| PREDICTED: ATP-dependent DNA helicase Q1 [Strongylocentrotus
purpuratus]
Length = 980
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 173/398 (43%), Positives = 228/398 (57%), Gaps = 21/398 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG ++R Q + A LSGRD LMPTGGGKS+CYQ+PAL G LVVSPL++LME+
Sbjct: 96 FGIKKYRPLQEKTMNASLSGRDVILLMPTGGGKSLCYQLPALVSKGFTLVVSPLLSLMED 155
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q + L+E G+ L+S + ++ + + L+LLYVTPE A + FM+ L+K
Sbjct: 156 QTMALEEIGVNATVLNSNTPPESVKDVHRQMIDARSELKLLYVTPEKIAKSKRFMACLEK 215
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ LL +AIDE HC S WGHDFRP Y+ L L+ D PIL LTATA V DV
Sbjct: 216 AYKANLLTRIAIDEVHCCSQWGHDFRPDYKILGLLKRQFTDTPILGLTATATMDVLDDVK 275
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---TCAIVYCLERT 269
L LQ V ++ FNRPNLFYEVR K + + L NG+ I+YC R
Sbjct: 276 GILGLQGCQVFRAGFNRPNLFYEVRPKPSKQAEFVEELIKL-INGEFKGQSGIIYCFSRK 334
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ ++ L GGI YHA L+ + RS V +W + QVVVATVAFGMGID+ DVR
Sbjct: 335 DTETMAENLKKGGIQAHPYHAMLDAQYRSQVHRNWKENNIQVVVATVAFGMGIDKPDVRF 394
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H +I KSME +YQESGRAGRD P++ ++YYG+ D R ++ Q+ + ++
Sbjct: 395 VIHHSISKSMENYYQESGRAGRDDEPARCIVYYGIGDVFRQSTMVVTEQTGQQKLYN--- 451
Query: 390 RSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVLG 426
MV YC + CRR I + FGE+ G
Sbjct: 452 ------------MVAYCVAPATCRRSLIGQHFGERWEG 477
>gi|226945339|ref|YP_002800412.1| ATP-dependent DNA helicase RecQ [Azotobacter vinelandii DJ]
gi|226720266|gb|ACO79437.1| ATP-dependent DNA helicase RecQ [Azotobacter vinelandii DJ]
Length = 707
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 236/397 (59%), Gaps = 17/397 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q I+ V G D LMPTGGGKS+CYQ+PAL + G+ +VVSPL
Sbjct: 7 RILKEVFGYDAFRGNQAAIIERVARGGDALVLMPTGGGKSLCYQVPALLREGLAVVVSPL 66
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALME+QV L E G+ L+ST ++ + +I E + G ++LLY+ PE P +
Sbjct: 67 IALMEDQVATLDELGVPAVALNSTLSLDEQREIAERIRQG--GIKLLYLAPERLVQPRML 124
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+ L+++ + L AIDEAHC+S WGHDFRP Y +L L P VP +ALTATA +
Sbjct: 125 AFLQRLP----IGLFAIDEAHCVSQWGHDFRPEYLQLGQLAELFPQVPRIALTATADKRT 180
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++++++ L L+N SSF+RPN+FY + KD L L IVYC+
Sbjct: 181 REEIVQRLHLENAERFLSSFDRPNIFYRIVAKD---QPRKQLLGFLAERRGDAGIVYCMS 237
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +EL+A+LS G YHAGL+++ R+ +++ ++VAT+AFGMGID+ +V
Sbjct: 238 RKKVEELAAFLSEQGFPALPYHAGLSNELRTLHQKRFLNEEGLIMVATIAFGMGIDKPNV 297
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PKS+EA+YQE+GRAGRD LP+ + + YG+ D I K NS+
Sbjct: 298 RFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQD-----VIFLKQMLNNSEG--- 349
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER + M+ CE + CRR+ +L F E++
Sbjct: 350 DERHKRIEQHKLDAMLALCEETRCRRQALLAYFDEEL 386
>gi|456352797|dbj|BAM87242.1| ATP-dependent DNA helicase RecQ [Agromonas oligotrophica S58]
Length = 625
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 179/415 (43%), Positives = 243/415 (58%), Gaps = 26/415 (6%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
N P + + +L FG FR Q ++ V G +C LMPTGGGKS+CYQ+PAL
Sbjct: 6 NAPTDRADRALAVLHSVFGLPGFRGAQEKVVRHVAEGGNCLVLMPTGGGKSLCYQLPALL 65
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+ G +VVSPLIALM +QV GL E G+ L+ST + + ++ L SG L LLYV
Sbjct: 66 RRGCGIVVSPLIALMRDQVAGLLEAGVNAAVLNSTLSREEADEVERRLISG--DLDLLYV 123
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE TP +S L+ R + L AIDEAHC+S WGHDFRP Y LS + PDVP
Sbjct: 124 APERLVTPRCLSLLE----RADIALFAIDEAHCVSQWGHDFRPEYIGLSVIAERFPDVPR 179
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA +K++ E L L + +SF+RPN+ YE+ K+ + A L + +K
Sbjct: 180 IALTATADELTRKEIAERLSLTDAPQFVASFDRPNIRYEIVDKN---NGPAQLKAFIKER 236
Query: 257 --GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
GD +VYCL R ++ +A L+ GI+ YHAGL+ R+ D +I+ VVVA
Sbjct: 237 HPGD-AGVVYCLSRAKVEDTAAALTEAGITAIPYHAGLDAGVRARNQDRFINEDGVVVVA 295
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRME 371
TVAFGMGID+ DVR V H ++PKS+EA+YQE+GRAGRD PS + + YG+ D +RRM
Sbjct: 296 TVAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSTAWMAYGLSDIVQQRRM- 354
Query: 372 FILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
++S +++F + SI +V E +GCRRK +L FGE G
Sbjct: 355 ----IDESTGAEAF------KRVSIRKLDALVALAETAGCRRKLLLSYFGESPAG 399
>gi|254472207|ref|ZP_05085607.1| ATP-dependent DNA helicase RecQ [Pseudovibrio sp. JE062]
gi|211958490|gb|EEA93690.1| ATP-dependent DNA helicase RecQ [Pseudovibrio sp. JE062]
Length = 612
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 239/400 (59%), Gaps = 16/400 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG+ FR Q I +V++G C LMPTG GKS+CYQ+PAL + G+ +VVSPLI
Sbjct: 18 VLKKVFGYDAFRGNQQVVIDSVMAGESCCVLMPTGAGKSLCYQVPALCRRGVGIVVSPLI 77
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++Q+ L+E G+ ++S + Y DL +G+ L LLYV PE F+
Sbjct: 78 ALMQDQIATLRELGVRATSINSALSYDEVQAAYRDLRAGE--LDLLYVAPERLVRSEFVG 135
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L++++ RGL+ L+AIDEAHCIS WGHDFRP YR+L+++R L VP LA+TATA +
Sbjct: 136 LLEELNQRGLIALLAIDEAHCISQWGHDFRPEYRELTNVRAKLEGVPCLAVTATADEPTR 195
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLE 267
KD+ E L L ++ S F+RPN+ Y V K + L LK I+YCL
Sbjct: 196 KDIQERLNLSR--LISSGFDRPNITYTVGIKH---NPKQQLRRFLKERPAGESGIIYCLS 250
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +E +A+L G YHAG + R + D +I ++VATVAFGMGID+ +V
Sbjct: 251 RKKVEETAAWLVDEGFDALPYHAGFDSSVREANQDRFIKEEGLIMVATVAFGMGIDKPNV 310
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PK++EA+YQE+GRAGRD LPS++ L YGM D + ++ ++++ +Q
Sbjct: 311 RFVAHLDLPKNIEAYYQETGRAGRDGLPSEAWLVYGMQDVVFLNQMIDRSEAPENQKQIE 370
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
R++ + YCE + CRR +L FG++ C
Sbjct: 371 RQK--------LRSFLAYCETATCRRSVLLRYFGDECEPC 402
>gi|115526900|ref|YP_783811.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris BisA53]
gi|115520847|gb|ABJ08831.1| ATP-dependent DNA helicase RecQ [Rhodopseudomonas palustris BisA53]
Length = 617
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 178/405 (43%), Positives = 238/405 (58%), Gaps = 38/405 (9%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL FG FR Q + V SG DC LMPTGGGKS+CYQ+P+L + G +VVSPLI
Sbjct: 19 LLNSVFGLPGFRGNQEKIVTHVASGGDCLVLMPTGGGKSLCYQLPSLLREGCGIVVSPLI 78
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV GL E G+ L+ST + Q + + L G+ L LLYV PE TP +S
Sbjct: 79 ALMRDQVAGLLEAGVRAAVLNSTLSYQEANAVEQQLLDGE--LDLLYVAPERLLTPRCLS 136
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L +R L L AIDEAHC+S WGHDFRP Y LS++ P+VP +ALTATA +
Sbjct: 137 LL----ARAKLALFAIDEAHCVSQWGHDFRPEYIGLSAIAEKFPNVPRIALTATADDLTR 192
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--------RYKDLLDDAYADLCSVLKANGDTC 260
+++ E L L +SF+RPN+ YE+ + K +D+ +A GD+
Sbjct: 193 REIAERLGLTEAPCFVASFDRPNIRYEIVDKHNAPSQLKAFIDERHA---------GDS- 242
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYCL R ++ +A LS GI+ YHAGL+ R+ D +I+ V+VATVAFGM
Sbjct: 243 GIVYCLSRAKVEDTAAALSRAGITALPYHAGLDAGVRAKNQDRFINEDGVVIVATVAFGM 302
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKN 377
GID+ DVR V H ++PKS+EA+YQE+GRAGRD PS + + YG+ D +RRM +
Sbjct: 303 GIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSDAWMAYGLSDIVQQRRM-----ID 357
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+S S +F + SI +V CE +GCRR ++L FGE
Sbjct: 358 ESTGSDAF------KRVSIGKLEALVGLCETTGCRRTRLLGYFGE 396
>gi|342879842|gb|EGU81076.1| hypothetical protein FOXB_08424 [Fusarium oxysporum Fo5176]
Length = 1668
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 239/404 (59%), Gaps = 17/404 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
++L+ F FR QL+AI A L G+D F LMPTGGGKS+CYQ+PA+ K G + +V
Sbjct: 817 RMLKDRFRMKGFRCNQLEAINATLGGQDAFVLMPTGGGKSLCYQLPAVVKTGKTRGVTIV 876
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS--LRLLYVTPELT 141
VSPL++LM++QV +K GI + + + K ++ + P L LLYVTPE+
Sbjct: 877 VSPLLSLMQDQVDHMKALGIQAVAFNGECSAEYKRQVMSAFNEKSPEHFLELLYVTPEMV 936
Query: 142 A-TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+ F S L+ +H +G + IDEAHC+S WGHDFRP Y+ L +R P VP++ALT
Sbjct: 937 SKNVNFNSGLETLHRKGKFARLVIDEAHCVSQWGHDFRPDYKILGQVRQKYPGVPVMALT 996
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDT 259
ATA V D+ +L + N + SFNRPNL+YEVR K + + S++ + +
Sbjct: 997 ATATKNVIVDIRHNLGMDNCQIFSQSFNRPNLYYEVRPKTTNEKVMDAISSLIHSRYANQ 1056
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
IVY + R ++++ LS GI+ YHAG + + + V + W +VVVAT+AFG
Sbjct: 1057 SGIVYTISRKNAEKVAESLSGNGITARFYHAGCDPQEKVEVQNSWQRGHVKVVVATIAFG 1116
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGID+ DVR V H +PKS+E +YQE+GRAGRD PS +L+YG D R ++ +++
Sbjct: 1117 MGIDKPDVRFVIHHGLPKSLEGYYQETGRAGRDGNPSDCILFYGKADIRVLKKLIADGDG 1176
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
+ Q ++ +S +++ +C+ S CRR +IL FGE
Sbjct: 1177 SHDQ--------KERQMSMLNRVTAFCDNKSDCRRTEILRYFGE 1212
>gi|429089133|ref|ZP_19151865.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
gi|426508936|emb|CCK16977.1| ATP-dependent DNA helicase RecQ [Cronobacter universalis NCTC 9529]
Length = 609
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 243/406 (59%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVLAGCRTGE--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|429112524|ref|ZP_19174294.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
gi|426313681|emb|CCK00407.1| ATP-dependent DNA helicase RecQ [Cronobacter malonaticus 507]
Length = 609
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 243/406 (59%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGQ--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFVA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|429102817|ref|ZP_19164791.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
gi|426289466|emb|CCJ90904.1| ATP-dependent DNA helicase RecQ [Cronobacter turicensis 564]
Length = 609
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 172/406 (42%), Positives = 243/406 (59%), Gaps = 23/406 (5%)
Query: 20 LHEKEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
++ +E L K +L+ FG+ QFR Q I AVL GRDC +MPTGGGKS+CYQIPAL K
Sbjct: 6 VYSQETLAKQVLQETFGYQQFRPGQATIIDAVLEGRDCLVVMPTGGGKSLCYQIPALVKT 65
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L G+A L+STQ+ + + +G+ +RLLY+ P
Sbjct: 66 GLTIVVSPLISLMKDQVDQLLANGVAAACLNSTQSRDEQQAVMAGCRTGE--VRLLYIAP 123
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ L L +VA+DEAHCIS WGHDFRP Y L LR P VP +A
Sbjct: 124 ERLMMDNFIDTLGYWD----LAMVAVDEAHCISQWGHDFRPEYAALGQLRARFPAVPFIA 179
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKAN 256
LTATA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 180 LTATADDTTRRDIVRLLGLDDPLIEISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQ 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YC R ++ +A L + GIS AAYHAGL + R+SV + + Q+VVATV
Sbjct: 235 RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLEHEVRASVQEKFQRDDLQIVVATV 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++
Sbjct: 295 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRC 351
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ K ER ++ F+ E CRR +L FGE
Sbjct: 352 LEEKAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|332291025|ref|YP_004429634.1| RecQ familyATP-dependent DNA helicase [Krokinobacter sp. 4H-3-7-5]
gi|332169111|gb|AEE18366.1| ATP-dependent DNA helicase, RecQ family [Krokinobacter sp.
4H-3-7-5]
Length = 732
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/409 (42%), Positives = 244/409 (59%), Gaps = 30/409 (7%)
Query: 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79
LHE+ L+ +FG +QF+ Q + I++++ G F +MPTGGGKS+CYQ+PAL G
Sbjct: 8 LHEE------LKRYFGFSQFKGLQEEVIRSIVGGNHSFVIMPTGGGKSLCYQLPALIAEG 61
Query: 80 IVLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLY 135
+VVSPLIALM+NQV L+ E+GIA SS ++K K+ ED+ G +LLY
Sbjct: 62 TAIVVSPLIALMKNQVDALRGISQEEGIAHVLNSSLTKGEIK-KVKEDITRG--VTKLLY 118
Query: 136 VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-V 194
V PE + L+ + ++ +AIDEAHCIS WGHDFRP YR L + + D +
Sbjct: 119 VAPESLTKEENVEFLRGV----TVSFLAIDEAHCISEWGHDFRPEYRNLRKIIGRIGDNI 174
Query: 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
PI+A+TATA PKVQ+D++++L + + K+SFNRPNL+YEVR K DA D+ +K
Sbjct: 175 PIIAVTATATPKVQEDILKNLGITDANTFKASFNRPNLYYEVRPKTAQVDA--DIIRFVK 232
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
N I+YCL R +EL+ L G+ YHAGL+ K R D ++ VVVA
Sbjct: 233 QNEGKSGIIYCLARKRVEELAQTLQVNGLKAVPYHAGLDAKTRVRHQDMFLMEDVDVVVA 292
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374
T+AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +
Sbjct: 293 TIAFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYAYKDIEKLEKFM 352
Query: 375 SKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
S + + +E + ++V + E S RRK IL FGE+
Sbjct: 353 S------GKPIAEQEIGH----ALLQEVVAFAETSMSRRKFILHYFGEE 391
>gi|390448336|ref|ZP_10233957.1| ATP-dependent DNA helicase RecQ [Nitratireductor aquibiodomus RA22]
gi|389666305|gb|EIM77757.1| ATP-dependent DNA helicase RecQ [Nitratireductor aquibiodomus RA22]
Length = 600
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 241/402 (59%), Gaps = 23/402 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ +G+ FR +Q + + V++G + F LMPTGGGKS+CYQIPAL +PG+ L++SPLI
Sbjct: 8 ILKTVYGYEAFRGRQAEIVDHVIAGNNAFVLMPTGGGKSLCYQIPALCRPGLGLIISPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM +QV LK+ G+ L+S + I+ + +G SL +LYV+PE P +
Sbjct: 68 ALMADQVAALKQAGVRAAALNSNLPPDARQAIWRAMGNG--SLDILYVSPETLLRPAVLD 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+LK++ L+L+AIDEAHC+S WGHDFRP YR+L +L PD P +ALTATA +
Sbjct: 126 RLKQVK----LSLIAIDEAHCLSQWGHDFRPHYRQLDALVEEFPDTPRMALTATADAPTR 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+++ L + + F+RPN+ Y + KD + L L+ + D IVYCL +
Sbjct: 182 AEIIAHLGIAGLDSFIAGFDRPNINYAIEEKD---NPRRQLQRFLEKHRDESGIVYCLSK 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
DE +A+L + G + AYHAG++ +AR + + ++VAT+AFGMGID+ DVR
Sbjct: 239 RKTDETAAWLQSEGYNALAYHAGMDREAREANQTRFQREEAVIMVATIAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKNSQSF 385
V H ++P S+EA+YQE+GRAGRD LPS++++ YG DD RRR FI + S
Sbjct: 299 FVAHLDLPGSIEAYYQETGRAGRDGLPSEAMMLYGFDDIALRRR--FIEESDAS------ 350
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ + + ++ E + CRR+ +L FG+ C
Sbjct: 351 ---DQRKRMEMQKLDALLGLAETAQCRRQVLLNYFGDDCEPC 389
>gi|167751826|ref|ZP_02423953.1| hypothetical protein ALIPUT_00068 [Alistipes putredinis DSM 17216]
gi|167660067|gb|EDS04197.1| ATP-dependent DNA helicase RecQ [Alistipes putredinis DSM 17216]
Length = 730
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 177/421 (42%), Positives = 253/421 (60%), Gaps = 28/421 (6%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
+E L + L+ +FG + F+ Q I+ VLSG+D F LMPTGGGKS+CYQ+PAL G+
Sbjct: 4 NEDSLLREKLKEYFGFSSFKGNQEAVIRNVLSGKDTFVLMPTGGGKSLCYQLPALLMDGV 63
Query: 81 VLVVSPLIALMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
+V+SPLIALM+NQV ++ + GIA FL+S+ ++ D+ G+ +LLY
Sbjct: 64 AIVISPLIALMKNQVDAMRTYSNDAGIA-HFLNSSLNKSAVAQVRNDVLEGRT--KLLYF 120
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
PE ++ L+K+ ++ AIDEAHCIS WGHDFRP YR++ + N + P+
Sbjct: 121 APESLTKEDNVAFLRKVK----VSFYAIDEAHCISEWGHDFRPEYRRIRPIINEIGTAPL 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ D+ ++L + + V KSSFNRPNL+YE+R K +D ++ +K +
Sbjct: 177 IALTATATPKVQMDIQKNLGMSDASVFKSSFNRPNLYYEIRPKHDVD---REIIRYIKQH 233
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +EL+ L A GI AYHAG++ + R++ DD++ R V+VAT+
Sbjct: 234 EGKSGIIYCLSRKKVEELTELLVANGIRALAYHAGMDAQTRAANQDDFLMERADVIVATI 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H++IPKS+E +YQE+GRAGRD L +Y D +++E
Sbjct: 294 AFGMGIDKPDVRYVIHYDIPKSLEGYYQETGRAGRDGGDGHCLTFYSYKDIQKLE----- 348
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV----LGCVASVT 432
K Q E+ K + + V Y E S CRRK +L FGE+ GC +
Sbjct: 349 ---KFMQGKPVAEQEIGKLL--LLETVSYAESSMCRRKTLLHYFGEEYPEENCGCCDNCL 403
Query: 433 H 433
H
Sbjct: 404 H 404
>gi|398835929|ref|ZP_10593279.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. YR522]
gi|398214251|gb|EJN00833.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. YR522]
Length = 618
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/398 (42%), Positives = 237/398 (59%), Gaps = 24/398 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG++ FR +Q + ++ V SG D LMPTGGGKS+CYQ+P+L + G+ +VVSPLIALM++
Sbjct: 25 FGYSSFRGQQGEIVRHVASGGDALVLMPTGGGKSLCYQVPSLLREGVGVVVSPLIALMQD 84
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L E G+ FL+S+Q+ +I L G L +LYV PE T + L I
Sbjct: 85 QVDALDEVGVRAAFLNSSQSFDEAMQIERRLRQG--DLDVLYVAPERLMTQRCLDLLDSI 142
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP Y KLS L P VP +ALTATA + + +++
Sbjct: 143 K----IGLFAIDEAHCVSQWGHDFRPEYIKLSILHERFPQVPRIALTATADAQTRAEIVH 198
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCD 272
L L+ SSF+RPN+ Y++ K + L +K+ + + IVYCL R D
Sbjct: 199 RLQLEQAQQFVSSFDRPNIRYQIVEKG---NGRKQLLDFIKSEHAEDAGIVYCLSRKKVD 255
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
E + +L + G++ AYHAG++ +ARS+ ++ K V+VATVAFGMGID+ DVR VCH
Sbjct: 256 ETAEFLRSEGLNALAYHAGMDAQARSTNQSRFLREDKIVMVATVAFGMGIDKPDVRFVCH 315
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFILSKNQSKNSQSFSTRE 389
++PKS+E +YQE+GR GRD LP+ + + YG+ D +RRM +S+ + F
Sbjct: 316 LDLPKSIEGYYQETGRGGRDGLPADAWMAYGLQDVVQQRRM-----IEESEADEDFKRVL 370
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
R+ M+ CE CRR +IL FG+Q C
Sbjct: 371 RTK------LDAMLGLCETMHCRRVRILNYFGQQATPC 402
>gi|228473728|ref|ZP_04058475.1| ATP-dependent DNA helicase RecQ [Capnocytophaga gingivalis ATCC
33624]
gi|228274840|gb|EEK13658.1| ATP-dependent DNA helicase RecQ [Capnocytophaga gingivalis ATCC
33624]
Length = 729
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 245/405 (60%), Gaps = 28/405 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L K L+ FG + F+ KQ + I++++ F LMPTGGGKS+CYQ+PAL K G +V+S
Sbjct: 8 LQKALKSIFGFSAFKGKQEEIIRSIMDNHHTFVLMPTGGGKSLCYQLPALLKEGTAIVIS 67
Query: 86 PLIALMENQVIGLKEKGIAG-----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL 140
PLIALM+NQV ++ GI+G L+S+ T + ED+ +G +LLYV PE
Sbjct: 68 PLIALMKNQVDVIR--GISGTDKIAHVLNSSLTKGEIRNVMEDIRNG--DTKLLYVAPES 123
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILAL 199
+ LK I+ ++ VA+DEAHCIS WGHDFRP YR + ++ L + +PI+AL
Sbjct: 124 LTKDEYADFLKTIN----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIERLGEGIPIIAL 179
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA KVQ+D++++L + V KSSFNRPNL+YEVR K + +D+ +K
Sbjct: 180 TATATTKVQEDILKNLGVPEANVFKSSFNRPNLYYEVRPK--TKNINSDIIRFVKQRPGQ 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YCL R + +EL+ L GI+ YHAGL+ K R+ D ++ VVVAT+AFG
Sbjct: 238 SGIIYCLSRKSVEELAQTLQVNGITAIPYHAGLDAKTRAKHQDMFLMEEVDVVVATIAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQ 378
MGID+ DVR V H++IPKS+E++YQE+GRAGRD L +Y D ++E F++ K
Sbjct: 298 MGIDKPDVRFVIHYDIPKSIESYYQETGRAGRDGGEGYCLAFYCYKDIEKLEKFMVGK-- 355
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ +++ MV Y E S RRK IL FGE+
Sbjct: 356 -------PIAEQEVGQAL--LQDMVAYAETSSSRRKFILHYFGEE 391
>gi|253690325|ref|YP_003019515.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756903|gb|ACT14979.1| ATP-dependent DNA helicase RecQ [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 608
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/403 (41%), Positives = 249/403 (61%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
KEAL V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 KEALAVQVLRDTFGYQQFRPGQQEIISATLSGQDCLVIMPTGGGKSLCYQIPALVMDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L+ G++ L+STQT + + ++ +G+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLQAYGVSAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F+ L + L+A+DEAHCIS WGHDFRP YR L ++ P +P +ALTA
Sbjct: 127 TTDSFLDHLAHWQ----IALIAVDEAHCISQWGHDFRPEYRALGQIKQRFPHLPFIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L LQ+PL+ +SF+RPN+ Y + ++K L L ++
Sbjct: 183 TADETTRNDIVRLLDLQSPLIQINSFDRPNIRYTLVEKFKPL-----DQLWMFVQGQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ +++ A L A G+S AYHAGL+++ R+ V + ++ QVVVATVAFG
Sbjct: 238 SGIIYCNSRSRVEDICARLQARGLSAGAYHAGLDNERRAQVQEAFLRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD L +++ L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLAAEAALFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPQLDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|269859903|ref|XP_002649675.1| ATP-dependent DNA helicase recQ [Enterocytozoon bieneusi H348]
gi|220066870|gb|EED44340.1| ATP-dependent DNA helicase recQ [Enterocytozoon bieneusi H348]
Length = 793
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/419 (39%), Positives = 248/419 (59%), Gaps = 15/419 (3%)
Query: 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS 67
Q+T+ ++ ++ E L+ F +FR Q I+A L G D F LMPTGGGKS
Sbjct: 248 FQATTHDHSDQTDYKDEKYF-YLKTIFRLDEFRSNQKKIIEASLRGDDVFVLMPTGGGKS 306
Query: 68 MCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127
+CYQ+PAL G+ +V+SPL++L+++Q+ L K I L+S T+ + IY+ +
Sbjct: 307 LCYQLPALINVGLTIVISPLLSLIQDQISSLLNKNIPAAALNSNCTVGERDLIYKCIRDT 366
Query: 128 KPSLRLLYVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186
+RLLYVTPEL + F LK ++ + IDEAHC+S WGHDFRP Y++LS
Sbjct: 367 NL-IRLLYVTPELLNNSDRFKGILKSLYCENKVCRFVIDEAHCVSQWGHDFRPDYKELSK 425
Query: 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY 246
LR P VPI+ALTATA KV+ D++ L +QN + KSSFNRPNL Y V K
Sbjct: 426 LRQSYPTVPIIALTATATKKVEVDIINVLNIQNCKIFKSSFNRPNLIYRVLPKTAT--TI 483
Query: 247 ADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
D+ S + ++ D+ I+YC + C++++ LS + YH GL+ R + + W
Sbjct: 484 LDIVSFINSHYADSPGIIYCTSKKECEKMAEELSR-DLKITYYHGGLSKYDRIRIQEQWN 542
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
+ +++ATVAFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD L S +LYY
Sbjct: 543 NKTYNIIIATVAFGMGIDKPDVRFVIHYSLPKSLEGYYQETGRAGRDGLESICILYYSYA 602
Query: 366 DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
D + + F++++ S++T ++ + +V YCE CRRK++L+ F E+
Sbjct: 603 DTKVINFLITR-------SYNTTAEQKQRQKEELFNVVKYCENKVECRRKQVLKYFNEE 654
>gi|397779827|ref|YP_006544300.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
gi|396938329|emb|CCJ35584.1| ATP-dependent DNA helicase RecQ [Methanoculleus bourgensis MS2]
Length = 780
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 239/414 (57%), Gaps = 16/414 (3%)
Query: 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP 73
T +P + L L ++G+ F Q + ++ +L RD ++ TGGGKS+CYQ+P
Sbjct: 29 TPGREPTLLMDPLYAALEHYYGYTSFLPFQEEIVRDILRKRDVLAVLATGGGKSLCYQLP 88
Query: 74 ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133
AL G+ +VVSPLI+LM++QV L +G+ L+ST K DL++G+ LRL
Sbjct: 89 ALVTGGLTVVVSPLISLMKDQVDTLVTQGVPAATLNSTLPYDAMVKTLADLEAGR--LRL 146
Query: 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
LYV+PE P F++ L++ + LVA+DEAHCIS WGH FRP YR+LS L+ P+
Sbjct: 147 LYVSPERVVQPRFLAALRE----SGVTLVAVDEAHCISEWGHQFRPEYRQLSVLKEQFPE 202
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
VP++ALTATA P+V++D++ L L +P V S NR NL Y V K DAY L L
Sbjct: 203 VPMIALTATAIPEVRQDIIRQLSLADPAVYVGSSNRENLRYTVAGKK---DAYPQLIDYL 259
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
++N + IVY + +E++ L G+ YHA L D R V + +I VV
Sbjct: 260 RSNPNRSGIVYFSSKKRTEEIAERLRNDGVRALPYHADLPDNYRHRVQEQFIRDEIDVVC 319
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373
AT AFGMGID+ DVR V H+++PKS+EA+ QE+GRAGRD S +L+Y DRR+ + +
Sbjct: 320 ATNAFGMGIDKPDVRFVIHYDMPKSLEAYAQETGRAGRDGEASDCILFYSPGDRRKNQVM 379
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
L ++ + ++ + M +CE + CRR+ +L FGE G
Sbjct: 380 LERDSLDRPDLYPV-------AVQKLNDMAAFCETTRCRREYLLRYFGETFTGV 426
>gi|326404494|ref|YP_004284576.1| ATP-dependent DNA helicase RecQ [Acidiphilium multivorum AIU301]
gi|325051356|dbj|BAJ81694.1| ATP-dependent DNA helicase RecQ [Acidiphilium multivorum AIU301]
Length = 610
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/398 (39%), Positives = 233/398 (58%), Gaps = 17/398 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FGH FR Q D + V++G D LMPTGGGKS+CYQ+PA+ + G+ +VVSPLI
Sbjct: 20 VLRRVFGHDGFRGPQRDIVTHVIAGHDALVLMPTGGGKSICYQLPAICRRGVGIVVSPLI 79
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM NQV L++ G+ +S+ + + L +G+ L LLYV PE T F++
Sbjct: 80 ALMRNQVEALRQLGVRAAAFNSSLEAAERATVLRALRAGE--LDLLYVAPERLVTEDFLA 137
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + + L AIDEAHC+S WGHDFRP Y +L+++ P VP +ALTATA P+ +
Sbjct: 138 LLGSVR----IALFAIDEAHCVSQWGHDFRPEYLQLATIGERFPGVPRIALTATADPQTR 193
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ L L + SSF+RPNL Y + K + L + L+ + C IVYCL R
Sbjct: 194 DDIARRLGLDGARLFISSFDRPNLTYAIAPKI---EPRRQLLAFLRGHEGECGIVYCLSR 250
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E +++L+ G+ YHAGL+ R+ D ++ ++VAT+AFGMGID+ D+R
Sbjct: 251 AAVEETASWLAGQGLRALPYHAGLDAATRNRNQDAFLGEDGLILVATIAFGMGIDKPDIR 310
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++P S+EA+YQE+GRAGRD P+++L+ YGM D ++ ++ + + R
Sbjct: 311 FVAHLDLPSSLEAYYQETGRAGRDGAPAETLMLYGMQDVALRGRLIDQSDAPDEVKRIAR 370
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ CE +GCRR+ +L FGE G
Sbjct: 371 --------AKLGALLGVCETAGCRRRAVLAHFGETYPG 400
>gi|157157237|ref|YP_001465308.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
gi|157079267|gb|ABV18975.1| ATP-dependent DNA helicase RecQ [Escherichia coli E24377A]
Length = 609
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 242/398 (60%), Gaps = 24/398 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA---IVY 264
++D++ L L +PL+ +SF+RPN+ Y +L + + L +++ + C I+Y
Sbjct: 189 RQDIVRLLGLNDPLIQINSFDRPNIRY------MLMEKFKPLDQLMRYVQEQCGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 243 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 303 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQ 359
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 360 LQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|148261092|ref|YP_001235219.1| ATP-dependent DNA helicase RecQ [Acidiphilium cryptum JF-5]
gi|146402773|gb|ABQ31300.1| ATP-dependent DNA helicase RecQ [Acidiphilium cryptum JF-5]
Length = 625
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 158/398 (39%), Positives = 233/398 (58%), Gaps = 17/398 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FGH FR Q D + V++G D LMPTGGGKS+CYQ+PA+ + G+ +VVSPLI
Sbjct: 35 VLRRVFGHDGFRGPQRDIVTHVIAGHDALVLMPTGGGKSICYQLPAICRRGVGIVVSPLI 94
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM NQV L++ G+ +S+ + + L +G+ L LLYV PE T F++
Sbjct: 95 ALMRNQVEALRQLGVRAAAFNSSLEAAERATVLRALRAGE--LDLLYVAPERLVTEDFLA 152
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L + + L AIDEAHC+S WGHDFRP Y +L+++ P VP +ALTATA P+ +
Sbjct: 153 LLGSVR----IALFAIDEAHCVSQWGHDFRPEYLQLATIGERFPGVPRIALTATADPQTR 208
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
D+ L L + SSF+RPNL Y + K + L + L+ + C IVYCL R
Sbjct: 209 DDIARRLGLDGARLFISSFDRPNLTYAIAPKI---EPRRQLLAFLRGHEGECGIVYCLSR 265
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E +++L+ G+ YHAGL+ R+ D ++ ++VAT+AFGMGID+ D+R
Sbjct: 266 AAVEETASWLAGQGLRALPYHAGLDAATRNRNQDAFLGEDGLILVATIAFGMGIDKPDIR 325
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++P S+EA+YQE+GRAGRD P+++L+ YGM D ++ ++ + + R
Sbjct: 326 FVAHLDLPSSLEAYYQETGRAGRDGAPAETLMLYGMQDVALRGRLIDQSDAPDEVKRIAR 385
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ ++ CE +GCRR+ +L FGE G
Sbjct: 386 --------AKLGALLGVCETAGCRRRAVLAHFGETYPG 415
>gi|345317380|ref|XP_001519897.2| PREDICTED: ATP-dependent DNA helicase Q5 [Ornithorhynchus anatinus]
Length = 412
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 235/389 (60%), Gaps = 13/389 (3%)
Query: 34 FGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91
FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL GI +VVSPLIAL+
Sbjct: 17 FGFDSFKTALQESATMAVVKGEKDVFVCMPTGAGKSLCYQLPALLAAGITIVVSPLIALI 76
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151
++QV L + L+S + + +L +P L+LLYVTPE+ A P F L
Sbjct: 77 QDQVDHLLALKVQAASLNSKLPAAERRALEAELGRPEPRLKLLYVTPEMVAAPSFQPILN 136
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ SR LL + +DEAHC+S WGHDFRP Y +L +LR LP P +ALTATA +V+ DV
Sbjct: 137 SLVSRRLLAYLVVDEAHCVSQWGHDFRPDYLQLGALRARLPHTPCVALTATAPRQVRDDV 196
Query: 212 MESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSV-LKANGDT--------CA 261
+ +L L+ P+ ++ R NLFY+V +KDLL D +ADL L+A G+ C
Sbjct: 197 VAALGLRQPIATFQTPCFRANLFYDVCFKDLLSDPFADLWDFCLQALGERDARGAFSGCG 256
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYC R CD+L+ LS G+ AYHAGL R V ++W+ + V+VAT++FGMG
Sbjct: 257 IVYCRTREACDQLARELSYRGLEAKAYHAGLKAAERVLVQNEWMEEKVPVIVATISFGMG 316
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
+D+ +VR V H++I KSM +YQESGRAGRD S LYY DR ++ F++ K ++
Sbjct: 317 VDKANVRCVAHWHIAKSMAGYYQESGRAGRDGKASWCRLYYSRKDRDQISFLIKKEIAR- 375
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSG 410
QS + S K ++ F +V +CE SG
Sbjct: 376 LQSKRGHKDSDKAALKAFDVLVAFCEESG 404
>gi|163751804|ref|ZP_02159020.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
gi|161328289|gb|EDP99450.1| ATP-dependent DNA helicase RecQ [Shewanella benthica KT99]
Length = 610
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 160/404 (39%), Positives = 243/404 (60%), Gaps = 19/404 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + + L L+ FG+ FR Q + I+ + +G DC +MPTGGGKS+CYQ+PAL P
Sbjct: 8 PQPQSDPLSSSLQSVFGYRTFRKGQREVIEQICAGIDCLVIMPTGGGKSLCYQLPALQMP 67
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L++ G+ +L+S+Q + + +I ++ SG+ L+LLYV+P
Sbjct: 68 GLTIVVSPLISLMKDQVDSLQQMGVNAGYLNSSQAGEERARILREMHSGE--LKLLYVSP 125
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E F+ +L ++H ++L AIDEAHCIS WGHDFRP Y L LR Y P VPI+A
Sbjct: 126 ERLLQASFIERLHELH----ISLFAIDEAHCISQWGHDFRPEYAALGRLRQYFPHVPIMA 181
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA ++D+ + L + P +SF+RPN+ Y V K +A L + A
Sbjct: 182 LTATADQATRQDICQRLTI-TPFSFLTSFDRPNIRYTVAEKL---NAANQLRQFVTAQNG 237
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ I+YC R DE++ L G + AYHAG + R+ V D ++ + +VVATVAF
Sbjct: 238 SSGIIYCGSRRRVDEVAERLRLQGHNADAYHAGRTQEERTDVQDRFLKDQLDIVVATVAF 297
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V H++IPKS+E++YQE+GRAGRD L +++L+ + D R+ ++ +++
Sbjct: 298 GMGINKSNVRYVVHYDIPKSVESYYQETGRAGRDGLDAEALMLFDPADIGRVRHLIEQSE 357
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q + + M + E CRR+ +L F E
Sbjct: 358 PGPQQQV---------ELHKLNTMAAFAEAQTCRRQVLLHYFDE 392
>gi|417955149|ref|ZP_12598172.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342813701|gb|EGU48661.1| ATP-dependent DNA helicase RecQ [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 612
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 243/412 (58%), Gaps = 18/412 (4%)
Query: 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70
TS +P+ E +L FG+ FRD Q + I++ ++G+D +MPTGGGKS+CY
Sbjct: 2 TSTLLAPQPMEELPTPQSILENVFGYQIFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCY 61
Query: 71 QIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130
QIPAL + G+ LV+SPLI+LM++QV LK G+A E ++ST + + +Y + SG +
Sbjct: 62 QIPALVRSGLTLVISPLISLMKDQVDQLKANGVAAECINSTMSREELISVYNRMHSG--A 119
Query: 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
L+L+YV+PE F+ +L+ + L+++A+DEAHCIS WGHDFRP Y L L+ Y
Sbjct: 120 LKLVYVSPERVLMRDFIERLESLP----LSMIAVDEAHCISQWGHDFRPEYASLGQLKQY 175
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLC 250
P VP++ALTATA +KD+M+ L L P SF+RPN+ Y + K + +
Sbjct: 176 FPHVPVMALTATADDATRKDIMQRLQLNEPHTYLGSFDRPNIRYTLVEK---HKPVSQVV 232
Query: 251 SVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310
L+ +C I+YC R + ++ L G+ A+YHAGL R+ V + + Q
Sbjct: 233 RFLENQRGSCGIIYCGSRKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQ 292
Query: 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370
+VVATVAFGMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++++ Y D +
Sbjct: 293 IVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWL 352
Query: 371 EFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+L + + + + M + E CRR+ +L FGE
Sbjct: 353 RRMLDEKDDGPQKQVEAHK---------LNAMSAFAEAQTCRRQVLLNYFGE 395
>gi|452984131|gb|EME83888.1| hypothetical protein MYCFIDRAFT_134466 [Pseudocercospora fijiensis
CIRAD86]
Length = 485
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/433 (39%), Positives = 244/433 (56%), Gaps = 28/433 (6%)
Query: 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77
K L +K + LR FG FR Q D + A L G D F TG GKS+C+Q+PA+
Sbjct: 7 KKLGQKVDIDFTLRKVFGRNSFRPVQRDVVTAALDGHDVFLQAATGFGKSLCFQLPAVVD 66
Query: 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
GI +V+SPL+ALM NQ+ GL+ I E ++ST KT+I DL SG P RLLYVT
Sbjct: 67 FGITIVISPLLALMNNQMAGLRAANIKVETINSTTAFSKKTEILNDLKSGHPHTRLLYVT 126
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL 197
PE F + L+ ++ + L +A+DEAHCIS WGHDFRPS+++L+ + PD+P++
Sbjct: 127 PEYCQLDHFRNHLRIVYQQQELARIAVDEAHCISEWGHDFRPSFKELNWFKKEFPDIPMI 186
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLK 254
TATA V++DV+ +L L NP LK+ + +RPNL YE+R+ D Y +L + ++
Sbjct: 187 CCTATATQAVREDVISTLAL-NPTKLKTFTMTTSRPNLHYEIRFTSDDQDRYDNLLAWIR 245
Query: 255 A---------------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293
A + + I+Y R + L+ L A GI YHAGL+
Sbjct: 246 ATHARRANNPTRSQELKKRGERSTNVPGIIYTWYRKDTEALATRLQADGIGAKPYHAGLS 305
Query: 294 DKARSSVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ + L W+ +R+ ++VAT AFGMGID+ +VR V H+ IPKS E +YQE+GRAGR
Sbjct: 306 VEQKDDHLTGWVKNREGYDIIVATTAFGMGIDKDNVRFVVHWQIPKSFEGYYQEAGRAGR 365
Query: 352 DQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SG 410
D S +LYY +DR R ++ + K S + ++ +++ ++ +CE S
Sbjct: 366 DGKASMCILYYSREDRDRAANMMQREIQKLSNARNSNVKANYNRGKSLQALIGFCESVSK 425
Query: 411 CRRKKILESFGEQ 423
CR K I FGEQ
Sbjct: 426 CRHKMIASYFGEQ 438
>gi|374629362|ref|ZP_09701747.1| ATP-dependent DNA helicase, RecQ family [Methanoplanus limicola DSM
2279]
gi|373907475|gb|EHQ35579.1| ATP-dependent DNA helicase, RecQ family [Methanoplanus limicola DSM
2279]
Length = 1165
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 246/397 (61%), Gaps = 23/397 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FGH++F Q I +L+GRD ++ TG GKS+CYQ+PAL GI LV+SPL
Sbjct: 18 ILKEKFGHSEFLPFQKKIIDDILNGRDTLGILATGSGKSICYQLPALLLDGITLVISPLK 77
Query: 89 ALMENQVIGLKEKGIAGEFLSST---QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
ALM++QV LK GI ++S+ + ++K + + +++L+V+PE
Sbjct: 78 ALMKDQVDNLKINGIPVATINSSNYGKHWEIKKR------AENQEIKILFVSPERVTNND 131
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
F+S LKK+ ++L+A+DEAHCIS WGH+FRP YR++ LR+ PDVPI+ALTATA P
Sbjct: 132 FISFLKKLK----ISLIAVDEAHCISMWGHNFRPEYREIRVLRDTFPDVPIIALTATAIP 187
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+V+ D+++ L L++P V SFNR NL+Y V+ K A + L N +C I+YC
Sbjct: 188 EVRNDIIKQLELRDPNVYVGSFNRENLYYYVKEKK---KAKEQILQYLNENHGSCGIIYC 244
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R T +E++ +L G + +HA L + + ++++ + ++ +TVAFGMG+D+
Sbjct: 245 LSRKTTEEIAGFLRNNGFNAKPFHANLQEDVKRETQEEFLYGKTPIICSTVAFGMGVDKP 304
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
D+R V H++ PK +E++YQE+GRAGRD+ S + +Y + D ++ ++ + S N
Sbjct: 305 DIRFVIHYDPPKDLESYYQETGRAGRDRENSDCIFFYSLGDFSKIRNMVYEENSGN---- 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
S R + K I+D ++++CE S CRRK +L FGE
Sbjct: 361 SGRRSIAMKRIND---LINFCETSQCRRKYLLSYFGE 394
>gi|451846770|gb|EMD60079.1| hypothetical protein COCSADRAFT_100311 [Cochliobolus sativus
ND90Pr]
Length = 485
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/424 (39%), Positives = 238/424 (56%), Gaps = 29/424 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F A FR Q + + A L G+D F T GKS+CYQ+PA+ GI +V+SPL+A
Sbjct: 16 LRKVFKKAAFRPPQREVVLATLEGQDVFVQAATSFGKSLCYQLPAVVDFGITIVISPLLA 75
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM NQV L+ I E ++ST + + +I DL G P RLLYVTPE F
Sbjct: 76 LMNNQVASLRNANIRVETINSTTPTEDRKRILADLQCGHPLTRLLYVTPEFCQGDHFRKI 135
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ IHS+ L +A+DEAHC+S WGHDFRPS+++LS + PD+P++ LTATA +V+
Sbjct: 136 LRVIHSQRELARIAVDEAHCVSEWGHDFRPSFQQLSFFKTEFPDIPVICLTATATARVRD 195
Query: 210 DVMESLCL--QNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA------------ 255
D++ +L L + + S +RPNL YEVR+K +D Y D S+LK
Sbjct: 196 DIINTLALDPKKLATFRMSSSRPNLHYEVRFKSDEEDHYDDFLSLLKGIYARRAERPERV 255
Query: 256 ---------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ I+Y L R C+ L+ L + GI YHAGL+ R+ L WI+
Sbjct: 256 TQLASQNQRTDNVPGIIYTLFRKDCESLAERLRSDGIGAKPYHAGLSVSERADALSSWIA 315
Query: 307 SRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
++ ++VAT AFGMGID+++VR V H+ IPKS E FYQE+GRAGRD S +LYYG
Sbjct: 316 NKPGYDIIVATTAFGMGIDKENVRFVVHWQIPKSFEGFYQEAGRAGRDGKASLCILYYGR 375
Query: 365 DDRRRMEFILSKN---QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG-CRRKKILESF 420
+DR R +++++ Q S +++ +V YCE + CR K I + F
Sbjct: 376 EDRDRAANMMARDTARQPSKSGGPDAQQQQLMNRARSLQALVGYCEATDKCRHKIIAKYF 435
Query: 421 GEQV 424
++
Sbjct: 436 ADEA 439
>gi|427427005|ref|ZP_18917050.1| ATP-dependent DNA helicase RecQ [Caenispirillum salinarum AK4]
gi|425883706|gb|EKV32381.1| ATP-dependent DNA helicase RecQ [Caenispirillum salinarum AK4]
Length = 600
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/400 (40%), Positives = 239/400 (59%), Gaps = 18/400 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG+ FR Q + I+ V+ G D +MPTGGGKS+CYQIP L +PG+ +VVSPLI
Sbjct: 8 VLRSVFGYDSFRGMQGEVIEHVVDGGDALVIMPTGGGKSLCYQIPGLVRPGVAIVVSPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L++ G+ L+ST + ++ + +G+ L L+YV PE G ++
Sbjct: 68 ALMQDQVEALRQLGVKAAALNSTLPWPEQQEVERQMRAGE--LDLVYVAPERLMGEGCLN 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L L L AIDEAHC+S WGHDFRP Y +L +L P VP +ALTATA +
Sbjct: 126 NLAHTD----LALFAIDEAHCVSQWGHDFRPEYLQLRTLHERFPHVPRVALTATADGPTR 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCLE 267
++++E L L+N + F+RPN+ Y VR K +A L S +K + IVYC+
Sbjct: 182 REIVERLALENGREFVAGFDRPNIRYHVRAKT---NAKTQLLSFIKREHSGESGIVYCMS 238
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R D+++A+L+ G+ YHAGL + R + D ++ VVAT+AFGMGID+ DV
Sbjct: 239 RAKVDDIAAWLNDEGVPALPYHAGLPKEVRFANQDRFLKEEGLTVVATIAFGMGIDKPDV 298
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++PKS+EA+YQE+GRAGRD LPS + + +GM D R+ ++ ++ + ++Q
Sbjct: 299 RFVAHLDLPKSLEAYYQETGRAGRDGLPSNAWMVFGMQDAARLFQMIDQSDAADAQKMIE 358
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
R + ++ + E + CRR+ +LE FG+ C
Sbjct: 359 RRK--------VESLLGFAETARCRRQVLLEYFGDTCEPC 390
>gi|330827839|ref|YP_004390791.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|406674905|ref|ZP_11082097.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC35]
gi|423211489|ref|ZP_17198022.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER397]
gi|328802975|gb|AEB48174.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii B565]
gi|404613569|gb|EKB10590.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER397]
gi|404628413|gb|EKB25195.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AMC35]
Length = 611
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 243/404 (60%), Gaps = 18/404 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + E+ + LL+ FG+ QFR QL+ I+ +++GRD L PTGGGKS+CYQIPAL +P
Sbjct: 9 PDPQPESPLALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRP 68
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L+ G+A +++S + + + + + G+ ++L+YV+P
Sbjct: 69 GLGVVVSPLISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGE--IKLVYVSP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E FM +L ++ L L AIDEAHC+S WGHDFRP Y L L+ + P VP++A
Sbjct: 127 ERLLQHEFMDRLAELP----LGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVA 182
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + D++ L L +P + +SF+RPN+ Y + K A L +++
Sbjct: 183 LTATADEATRSDMLHRLELNDPFIHTASFDRPNIRYSLVEKF---KAAEQLLRYVQSQKG 239
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYC R +E++ LS G A YHAGL + R D ++ ++VVATVAF
Sbjct: 240 NCGIVYCSSRNRVEEVAERLSRHGCKAAPYHAGLPLEQRQQTQDAFLKDDIEIVVATVAF 299
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H++IPK++E++YQE+GRAGRD P+++LL Y D R+ +L +
Sbjct: 300 GMGIDKPNVRFVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLL--DN 357
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+N Q + + M + E CRR+ +L FGE
Sbjct: 358 IENPQQLQVEQYK-------LNVMAAFAEAQTCRRQVLLNYFGE 394
>gi|417610582|ref|ZP_12261072.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
gi|345353354|gb|EGW85588.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_DG131-3]
Length = 603
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/398 (41%), Positives = 242/398 (60%), Gaps = 24/398 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 9 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 68
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 69 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 126
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 127 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 182
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA---IVY 264
++D++ L L +PL+ +SF+RPN+ Y +L + + L +++ + C I+Y
Sbjct: 183 RQDIVRLLGLNDPLIQINSFDRPNIRY------MLMEKFKPLDQLMRYVQEQCGKSGIIY 236
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 237 CNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINK 296
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 297 PNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQ 353
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 354 LQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 385
>gi|429740154|ref|ZP_19273860.1| ATP-dependent DNA helicase RecQ [Prevotella saccharolytica F0055]
gi|429154163|gb|EKX96911.1| ATP-dependent DNA helicase RecQ [Prevotella saccharolytica F0055]
Length = 725
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 236/402 (58%), Gaps = 23/402 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG +F+ Q I+ +L+G D F LMPTGGGKS+CYQ+P+L G +V+S
Sbjct: 7 LTEKLKQYFGFDKFKGDQETIIRNLLAGNDTFVLMPTGGGKSLCYQLPSLLMEGTGIVIS 66
Query: 86 PLIALMENQV---IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E G +L+S+ ++ ED+ K +LLYV PE +
Sbjct: 67 PLIALMKNQVDVMNGMSEHGCVAHYLNSSLNKSSILEVMEDVRQRKT--KLLYVAPESLS 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ LK I ++ AIDEAHCIS WGHDFRP YR + + PI+ALTAT
Sbjct: 125 KEENIEFLKTIK----VSFYAIDEAHCISEWGHDFRPEYRNIRPTIMKIGKAPIIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ ++L + + KSSFNR NL+YEVR K D ++ +K + D I
Sbjct: 181 ATDKVRSDIKKNLGISDAKEFKSSFNRVNLYYEVRSK--TQDVDRNIIMFIKQHADKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +EL+A L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELAAVLQANNIKAAPYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSKN 381
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D R++E FI K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGLCIAFYSNQDLRKLEKFIDGK----- 353
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
S E+ + + + Y E S CRRK +L FGE+
Sbjct: 354 ----SGAEQDIGRQL--LLETAAYAESSVCRRKMLLHYFGEE 389
>gi|417846212|ref|ZP_12492224.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
gi|341953231|gb|EGT79743.1| ATP-dependent DNA helicase recQ [Haemophilus haemolyticus M21639]
Length = 627
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/404 (40%), Positives = 243/404 (60%), Gaps = 22/404 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQ+PAL G+
Sbjct: 20 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQVPALCFEGLT 79
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 80 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQ--LKLLYVSPEKV 137
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P PI+ALTA
Sbjct: 138 MTNSFF----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTA 193
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L+NP SF+RPN+ Y E +YK + L + A
Sbjct: 194 TADHATRQDILTHLNLENPHRYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 248
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 249 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETALRERVQQDFQRDNVQVVVATIAFG 308
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR + HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ IL +
Sbjct: 309 MGINKSNVRFIAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPE 368
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ + E+ ++I +F+ E CRR +L FGE
Sbjct: 369 TSQRQI---EQHKLEAIGEFA------ESQTCRRLVLLNYFGEH 403
>gi|453080394|gb|EMF08445.1| ATP-dependent DNA helicase recQ [Mycosphaerella populorum SO2202]
Length = 485
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/420 (39%), Positives = 234/420 (55%), Gaps = 26/420 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR FG FR Q + + A L G D F TG GKS+CYQ+PA+ GI +V+SPL+A
Sbjct: 19 LRKVFGRNTFRPVQREVVTAALDGHDIFLQAATGFGKSLCYQLPAVVDFGITIVISPLLA 78
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM NQ+ GL+ I + ++ST + K I DL SG P +RLLYVTPE F +
Sbjct: 79 LMNNQMAGLRAANIKVDTINSTTSQTTKQAIMADLKSGHPLIRLLYVTPEYCQLDHFRNS 138
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK ++ + L +A+DEAHCIS WGHDFRPS+++LS + PDVP++ TATA V++
Sbjct: 139 LKTVYQQRELARIAVDEAHCISEWGHDFRPSFKELSWFKQEFPDVPMICCTATAPQAVRE 198
Query: 210 DVMESLCLQNPLV--LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD--------- 258
DV+ +L L + + +RPNL +EVR+ + +D Y + + +++ +
Sbjct: 199 DVIRTLGLDQSRLQSFAMTTSRPNLHFEVRFTNEEEDRYDNFLAWIRSAHERRTNNVARS 258
Query: 259 ------------TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
I+Y R ++L+A L GI AYHAGL + + LD W+
Sbjct: 259 QELSQRNERPTNVSGIIYTWYRKDTEQLAARLQHDGIGAKAYHAGLTIEQKEDHLDGWVK 318
Query: 307 SRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
++ V+VAT AFGMGID+++VR V H+ IPKS E FYQESGRAGRD S +LYY
Sbjct: 319 NKDGYDVIVATTAFGMGIDKENVRFVVHWQIPKSFEGFYQESGRAGRDGKASICMLYYSR 378
Query: 365 DDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+DR R+ F + + K ++ +V YCE + CR K I + FGE+
Sbjct: 379 EDRERLSFTMQREMEKQRGKGEMALKAQANRSKSVQALVKYCESVTVCRHKLIADYFGEK 438
>gi|300714809|ref|YP_003739612.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
gi|299060645|emb|CAX57752.1| ATP-dependent DNA helicase [Erwinia billingiae Eb661]
Length = 608
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 242/403 (60%), Gaps = 23/403 (5%)
Query: 23 KEALV-KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+EAL ++L+ FG+ FR Q IQA L+GRDC +MPTGGGKS+CYQIPAL + G+
Sbjct: 8 QEALAEQVLQETFGYQHFRPGQQSIIQASLNGRDCLVVMPTGGGKSLCYQIPALVREGLT 67
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G++ L+STQT + + ++ +GK +RLLY+ PE
Sbjct: 68 LVVSPLISLMKDQVDQLLANGVSAACLNSTQTREEQQEVMAGCRTGK--VRLLYIAPERL 125
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + ++A+DEAHCIS WGHDFRP Y L LR LPDVP++ALTA
Sbjct: 126 MMDNFLDNLLHWNP----AMLAVDEAHCISQWGHDFRPEYGALGQLRQRLPDVPVMALTA 181
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D+ L L +PL+ SSF+RPN+ Y + ++K L ++
Sbjct: 182 TADETTRNDIARLLQLDDPLIQISSFDRPNIRYTLVEKFK-----PTEQLLRYVQDQRGK 236
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
C I+YC R ++ +A L + G+S AYHAG+++ R+ V + + Q+VVATVAFG
Sbjct: 237 CGIIYCNSRAKVEDTAARLQSRGLSVGAYHAGMDNAHRAQVQEAFQRDDLQIVVATVAFG 296
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP+++L+ Y D M ++
Sbjct: 297 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEALMLYDPAD---MAWLRRCLDE 353
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ER ++ F+ E CRR +L FGE
Sbjct: 354 KAPGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 390
>gi|150397426|ref|YP_001327893.1| ATP-dependent DNA helicase RecQ [Sinorhizobium medicae WSM419]
gi|150028941|gb|ABR61058.1| ATP-dependent DNA helicase RecQ [Sinorhizobium medicae WSM419]
Length = 647
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/419 (41%), Positives = 240/419 (57%), Gaps = 26/419 (6%)
Query: 10 STSQTQKNKPLHEKEAL---VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGK 66
S ++ L E E + + LL+ +G++ FR +Q + I+ V++G D L PTG GK
Sbjct: 31 SMPESHSTACLFETEGVRNPLDLLKRIYGYSTFRGQQQEVIEHVVAGGDAVVLFPTGAGK 90
Query: 67 SMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS 126
S+C+QIPAL + G+ +VVSPLIALM +QV LK+ G+ L+S+ T + + L +
Sbjct: 91 SLCFQIPALCRGGVGVVVSPLIALMRDQVEALKQLGVRAAALNSSLTREEAIAVRRSLST 150
Query: 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186
G +L L+YVTPE T GF + + L AIDEAHC+S WGHDFRP YR L
Sbjct: 151 G--TLDLIYVTPERAVTDGFAEMIAGAE----IALFAIDEAHCVSQWGHDFRPEYRGLGC 204
Query: 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY 246
L P+VP +ALTATA P + D++E L L V SSF+RPN+ YE+ +D
Sbjct: 205 LAERFPNVPRIALTATADPHTRADLIERLALGAARVFTSSFDRPNIAYEIVERD---QPR 261
Query: 247 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
L L D IVYCL R ++ + +L+ GI YHAG++ R + D ++
Sbjct: 262 QQLLRFLSRFKDASGIVYCLSRAKVEDTAEWLNTQGIRALPYHAGMDRALRDAHQDAFLK 321
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+VATVAFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD LPS+ + YGM D
Sbjct: 322 EENLCLVATVAFGMGIDKPDVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVWMAYGMAD 381
Query: 367 ---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
RRRM ++ + ER+ S ++ CE +GCRR+ +L FGE
Sbjct: 382 VIQRRRM-----IDEGGAPEEVKRIERAKLNS------LLAICETAGCRRQAVLAHFGE 429
>gi|423203715|ref|ZP_17190283.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
gi|404612493|gb|EKB09554.1| ATP-dependent DNA helicase RecQ [Aeromonas veronii AER39]
Length = 611
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/404 (40%), Positives = 243/404 (60%), Gaps = 18/404 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P + E+ + LL+ FG+ QFR QL+ I+ +++GRD L PTGGGKS+CYQIPAL +P
Sbjct: 9 PDPQPESPLALLQAVFGYQQFRPGQLEIIEQIVAGRDALVLKPTGGGKSLCYQIPALLRP 68
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLI+LM++QV L+ G+A +++S + + + + + G+ ++L+YV+P
Sbjct: 69 GLGVVVSPLISLMKDQVDSLRANGVAAVYINSALSREEMIQNFAAMRRGE--IKLVYVSP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E FM +L ++ L L AIDEAHC+S WGHDFRP Y L L+ + P VP++A
Sbjct: 127 ERLLQHEFMDRLAELP----LGLFAIDEAHCVSQWGHDFRPEYAALGRLKQWFPQVPVVA 182
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA + D++ L L +P + +SF+RPN+ Y + K A L +++
Sbjct: 183 LTATADEATRSDMLHRLELNDPFIHTASFDRPNIRYSLVEKF---KAAEQLLRYVQSQKG 239
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C IVYC R +E++ LS G A YHAGL + R D ++ ++VVATVAF
Sbjct: 240 NCGIVYCSSRNRVEEVAERLSRHGCKAAPYHAGLPLEQRQQTQDAFLKDDIEIVVATVAF 299
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ +VR V H++IPK++E++YQE+GRAGRD P+++LL Y D R+ +L +
Sbjct: 300 GMGIDKPNVRFVVHYDIPKNIESYYQETGRAGRDGTPAEALLLYDPADIGRVRRLL--DN 357
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+N Q + + M + E CRR+ +L FGE
Sbjct: 358 IENPQQLQVEQYK-------LNVMAAFAEAQTCRRQVLLNYFGE 394
>gi|429855219|gb|ELA30187.1| RecQ family ATP-dependent DNA helicase [Colletotrichum
gloeosporioides Nara gc5]
Length = 1695
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 174/405 (42%), Positives = 234/405 (57%), Gaps = 20/405 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVLV 83
+ L+ F FR QL+AI A L+G+D F LMPTGGGKS+CYQ+PA+ G I +V
Sbjct: 792 RALKDRFRMRGFRPNQLEAINATLAGKDAFVLMPTGGGKSLCYQLPAIINSGKTRGITIV 851
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL--RLLYVTPE-L 140
VSPL++LM++QV + I L+ T Q + +I+ P L +LLYVTPE L
Sbjct: 852 VSPLLSLMQDQVDHMSALNIQAVSLNGETTSQKRNQIFSSFKERSPELFVQLLYVTPEML 911
Query: 141 TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200
+P FM L +HS L + IDEAHC+S WGHDFRP Y+ L LRN+ P VPI+ALT
Sbjct: 912 NNSPSFMKALTTLHSGKRLARIVIDEAHCVSQWGHDFRPDYKALGKLRNHFPTVPIIALT 971
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCSVLKANGDT 259
ATA V D+ +L + N V SFNRPNL YEVR K+ L ADL +
Sbjct: 972 ATATQNVIVDIKHNLGMDNCEVFCQSFNRPNLTYEVRRKERELVHKIADL--IQSKYDQQ 1029
Query: 260 CAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
C I+Y L R T ++++ L GI YHA ++ + R V W R VVVAT+AF
Sbjct: 1030 CGIIYTLSRKTSEQVAEKLRDKYGILAHHYHAQMSPEDRIDVQRQWQKDRIHVVVATIAF 1089
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQE+GRAGRD PS +LY+G D + +++
Sbjct: 1090 GMGIDKPDVRFVIHHSVPKSLEGYYQETGRAGRDGNPSDCILYFGYQDVVTLRKMIADGD 1149
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE 422
Q R+R+ +++ +C+ CRR +IL FGE
Sbjct: 1150 GNEDQ--KERQRTM------LNRVTAFCDNRENCRRVEILRYFGE 1186
>gi|395218411|ref|ZP_10402063.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394454486|gb|EJF09132.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 624
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 237/396 (59%), Gaps = 21/396 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ QFR Q I +L +D LMPTGGGKS+CYQ+PA+ PG+ +VVSPLIA
Sbjct: 12 LKLYFGYEQFRPMQEHIITNILQQKDVVVLMPTGGGKSVCYQVPAVVMPGLCVVVSPLIA 71
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV L GI +L+S+QT + +I E +G+ ++LLYV+PE + GF S
Sbjct: 72 LMKDQVEALLANGIPAAYLNSSQTADEQYQIEEKSLAGQ--IKLLYVSPEKLLSAGFFSF 129
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
LK++ ++L A+DEAHCIS+WGHDFRP Y +L +L+ P VP++ALTATA QK
Sbjct: 130 LKRLQ----VSLFAVDEAHCISAWGHDFRPEYTQLRALKQQFPAVPVVALTATADKLTQK 185
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ E L L+ P V +SF+RPN+ V + + + L I+YCL R
Sbjct: 186 DIQEQLQLRQPEVFVASFDRPNINLMVLPGQ---NRFNKITDFLSRRHGQPGIIYCLSRK 242
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+ L+ L G + YHAG++ + RS + ++ +V AT+AFGMGID+ +VR
Sbjct: 243 ATESLAGKLRENGYNATFYHAGMSAQQRSKAQESFLRDDVLIVCATIAFGMGIDKSNVRW 302
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN-QSKNSQSFSTR 388
V H+N+PK++E +YQE GRAGRD S +LL+Y D + +LS N +S+N
Sbjct: 303 VIHYNLPKNVEGYYQEIGRAGRDGAKSDALLFYSFADVMNLRTMLSDNDKSQNELQLVKL 362
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
ER M + E + CRR+ +L+ FGEQ+
Sbjct: 363 ER-----------MQQFAEATFCRRRILLQYFGEQM 387
>gi|147919945|ref|YP_686301.1| ATP-dependent DNA helicase [Methanocella arvoryzae MRE50]
gi|110621697|emb|CAJ36975.1| ATP-dependent DNA helicase [Methanocella arvoryzae MRE50]
Length = 605
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/402 (42%), Positives = 242/402 (60%), Gaps = 17/402 (4%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+K+ L L +FG++ FR Q + + VL GRD ++ TGGGKS+CYQ+PAL G+
Sbjct: 6 DKQLLRDTLERYFGYSTFRPFQEEIVTDVLEGRDVLAIIATGGGKSLCYQLPALVSGGLT 65
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L + I+ L+S+ + I + L GK +++LY++PE
Sbjct: 66 IVVSPLISLMKDQVDDLLARNISAATLNSSMELWEIRSIEDQLLGGK--IKVLYISPERI 123
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
+ L+K+ + L+AIDEAHCIS WGH FRP YR+LS L++ P VP++ALTA
Sbjct: 124 TQDSCLQFLEKLD----VKLIAIDEAHCISMWGHQFRPDYRRLSLLKSKFPKVPMIALTA 179
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261
+A P+V++D+ L L +P SFNR NL YEVR K DA A + S + N
Sbjct: 180 SAIPEVREDIASQLKLVSPKKYLGSFNRINLRYEVREKK---DATAQILSYIARNRGKSG 236
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
IVYCL R T +EL+ L GI YHA L D RS+ + ++ +VV ATVAFGMG
Sbjct: 237 IVYCLARKTTEELAEKLRRAGIKALPYHADLPDTVRSATQEKFVRDDVEVVCATVAFGMG 296
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H+++PK++EA+YQE+GRAGRD S +++Y D +M +L K
Sbjct: 297 IDKPDVRYVIHYDMPKNLEAYYQETGRAGRDGEASDCIMFYSPADALKMRGLLEKEY--- 353
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
T S+ ++ + M D+CE CRRK +L FGE+
Sbjct: 354 -----TDYHLSRVAMKKWQAMRDFCETRLCRRKYLLSYFGEE 390
>gi|359406153|ref|ZP_09198865.1| ATP-dependent DNA helicase RecQ [Prevotella stercorea DSM 18206]
gi|357556705|gb|EHJ38287.1| ATP-dependent DNA helicase RecQ [Prevotella stercorea DSM 18206]
Length = 723
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 232/401 (57%), Gaps = 21/401 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ HFG F+ Q I+ +L G D F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LNEQLKHHFGFDSFKGDQEAIIRNLLEGNDTFVLMPTGGGKSLCYQLPSLIMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV GL E+ +L+S+ ++Y+D+ G+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVVNGLSEESGVAHYLNSSLNRAAINQVYKDVHEGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ + ++ AIDEAHCIS WGHDFRP YR + N + P++ALTAT
Sbjct: 125 KEDNLEFFRSFK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGAAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ +SL + + KSSFNR NL+YEVR K +D + +K + I
Sbjct: 181 ATDKVRMDIKKSLGITDAKEFKSSFNRANLYYEVRQK--TNDIDKQIIKFIKQHPGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC+ R +EL+A L A I AAYHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCISRKKVEELAAVLKANDIKAAAYHAGLDSATRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAYKDLQKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ E+ + + + Y E S CRRK +L FGE+
Sbjct: 351 EGKPVAEQDIGRQL--LQETAAYAETSVCRRKVLLHYFGEE 389
>gi|285019020|ref|YP_003376731.1| DNA helicase superfamily II protein [Xanthomonas albilineans GPE
PC73]
gi|283474238|emb|CBA16739.1| putative dna helicase superfamily II protein [Xanthomonas
albilineans GPE PC73]
Length = 602
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/394 (42%), Positives = 235/394 (59%), Gaps = 17/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL FG+ QFR Q D ++ V +G D LMPTGGGKS+CYQIP+L + G +VVSPLI
Sbjct: 8 LLSRVFGYDQFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQIPSLLREGTGIVVSPLI 67
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
ALM++QV L + G+ E+L+ST + + L +G+ L LLYV PE TP F+S
Sbjct: 68 ALMQDQVEALHQVGVRAEYLNSTLDAERAQHVERALLAGE--LDLLYVAPERLLTPRFLS 125
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
++ R + L AIDEAHC+S WGHDFRP YR+L+ L P P +ALTATA P Q
Sbjct: 126 LIE----RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQTPRIALTATADPPTQ 181
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+++ E L L SSF+RPN+ Y V KD +A L L+ + + IVYCL R
Sbjct: 182 REIAERLDLAQARHFVSSFDRPNIRYTVVQKD---NARRQLLDFLRGHRGSAGIVYCLSR 238
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+E + +L G++ YHAGL R+ ++ V+ AT+AFGMGID+ DVR
Sbjct: 239 RKVEETADFLVREGLNALPYHAGLPANVRAEHQRRFLREEGIVMCATIAFGMGIDKPDVR 298
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++PKS+E +YQE+GRAGRD +++ L YG+ D +L K + ++ R
Sbjct: 299 FVAHTDLPKSLEGYYQETGRAGRDGDAAEAWLCYGLGD-----VVLLKQMIEQGEAGEDR 353
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+R ++ + Q++ YCE CRR+ +L +FGE
Sbjct: 354 KRVERRKL---DQLLGYCESLQCRRQVLLANFGE 384
>gi|22124312|ref|NP_667735.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM10+]
gi|45442967|ref|NP_994506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Microtus
str. 91001]
gi|51594557|ref|YP_068748.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
32953]
gi|108806187|ref|YP_650103.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|108810297|ref|YP_646064.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|145600700|ref|YP_001164776.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|153947607|ref|YP_001399215.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|153997111|ref|ZP_02022244.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|162418857|ref|YP_001605148.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165926240|ref|ZP_02222072.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165939115|ref|ZP_02227666.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011675|ref|ZP_02232573.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166213635|ref|ZP_02239670.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167401854|ref|ZP_02307342.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167421077|ref|ZP_02312830.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167426281|ref|ZP_02318034.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|167469646|ref|ZP_02334350.1| ATP-dependent DNA helicase RecQ [Yersinia pestis FV-1]
gi|218930836|ref|YP_002348711.1| ATP-dependent DNA helicase RecQ [Yersinia pestis CO92]
gi|229837162|ref|ZP_04457327.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|229839522|ref|ZP_04459681.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229900085|ref|ZP_04515222.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229900469|ref|ZP_04515598.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|270488824|ref|ZP_06205898.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294505497|ref|YP_003569559.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|384123966|ref|YP_005506586.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|384127827|ref|YP_005510441.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|384138308|ref|YP_005521010.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|384413065|ref|YP_005622427.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|420549046|ref|ZP_15046797.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|420554379|ref|ZP_15051553.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|420560006|ref|ZP_15056434.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|420565382|ref|ZP_15061272.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|420581390|ref|ZP_15075799.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|420586787|ref|ZP_15080681.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|420591869|ref|ZP_15085252.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|420597248|ref|ZP_15090090.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|420602944|ref|ZP_15095145.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|420608335|ref|ZP_15100039.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|420613725|ref|ZP_15104865.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|420619086|ref|ZP_15109540.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|420624397|ref|ZP_15114328.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|420629378|ref|ZP_15118846.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|420639815|ref|ZP_15128223.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|420645253|ref|ZP_15133196.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|420650581|ref|ZP_15137995.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|420661646|ref|ZP_15147913.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|420666997|ref|ZP_15152736.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|420671856|ref|ZP_15157169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|420682761|ref|ZP_15167043.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|420688171|ref|ZP_15171857.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|420693441|ref|ZP_15176465.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|420699163|ref|ZP_15181511.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|420705063|ref|ZP_15186161.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|420710327|ref|ZP_15190893.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|420721372|ref|ZP_15200506.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|420726804|ref|ZP_15205306.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|420732302|ref|ZP_15210251.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|420737293|ref|ZP_15214760.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|420742774|ref|ZP_15219685.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|420753919|ref|ZP_15229361.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|420765089|ref|ZP_15238752.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|420780906|ref|ZP_15252870.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|420797138|ref|ZP_15267335.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|420802233|ref|ZP_15271911.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|420812973|ref|ZP_15281585.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|420818445|ref|ZP_15286557.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|420823785|ref|ZP_15291325.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|420828848|ref|ZP_15295891.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|420834430|ref|ZP_15300927.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|420839377|ref|ZP_15305399.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|420844579|ref|ZP_15310118.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|420850225|ref|ZP_15315189.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|420855965|ref|ZP_15320020.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|420861052|ref|ZP_15324517.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|421765358|ref|ZP_16202143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
gi|21957085|gb|AAM83986.1|AE013640_5 ATP-dependent DNA helicase [Yersinia pestis KIM10+]
gi|45437834|gb|AAS63383.1| ATP-dependent DNA helicase [Yersinia pestis biovar Microtus str.
91001]
gi|51587839|emb|CAH19442.1| ATP-dependent DNA helicase [Yersinia pseudotuberculosis IP 32953]
gi|108773945|gb|ABG16464.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Nepal516]
gi|108778100|gb|ABG12158.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Antiqua]
gi|115349447|emb|CAL22420.1| ATP-dependent DNA helicase [Yersinia pestis CO92]
gi|145212396|gb|ABP41803.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Pestoides F]
gi|149289417|gb|EDM39495.1| ATP-dependent DNA helicase [Yersinia pestis CA88-4125]
gi|152959102|gb|ABS46563.1| ATP-dependent DNA helicase RecQ [Yersinia pseudotuberculosis IP
31758]
gi|162351672|gb|ABX85620.1| ATP-dependent DNA helicase RecQ [Yersinia pestis Angola]
gi|165912888|gb|EDR31514.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921764|gb|EDR38961.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989444|gb|EDR41745.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166205308|gb|EDR49788.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166961206|gb|EDR57227.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167048747|gb|EDR60155.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167054800|gb|EDR64604.1| ATP-dependent DNA helicase RecQ [Yersinia pestis biovar Mediaevalis
str. K1973002]
gi|229682488|gb|EEO78575.1| ATP-dependent DNA helicase [Yersinia pestis Nepal516]
gi|229686865|gb|EEO78944.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
India 195]
gi|229695888|gb|EEO85935.1| ATP-dependent DNA helicase [Yersinia pestis biovar Orientalis str.
PEXU2]
gi|229706105|gb|EEO92114.1| ATP-dependent DNA helicase [Yersinia pestis Pestoides A]
gi|262363562|gb|ACY60283.1| ATP-dependent DNA helicase [Yersinia pestis D106004]
gi|262367491|gb|ACY64048.1| ATP-dependent DNA helicase [Yersinia pestis D182038]
gi|270337328|gb|EFA48105.1| ATP-dependent DNA helicase RecQ [Yersinia pestis KIM D27]
gi|294355956|gb|ADE66297.1| ATP-dependent DNA helicase [Yersinia pestis Z176003]
gi|320013569|gb|ADV97140.1| ATP-dependent DNA helicase [Yersinia pestis biovar Medievalis str.
Harbin 35]
gi|342853437|gb|AEL71990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis A1122]
gi|391421158|gb|EIQ83878.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-01]
gi|391421371|gb|EIQ84073.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-02]
gi|391421448|gb|EIQ84143.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-03]
gi|391436188|gb|EIQ97169.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-04]
gi|391453252|gb|EIR12582.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-07]
gi|391453411|gb|EIR12729.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-08]
gi|391455260|gb|EIR14393.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-09]
gi|391469060|gb|EIR26879.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-10]
gi|391469818|gb|EIR27555.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-11]
gi|391471272|gb|EIR28850.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-12]
gi|391484954|gb|EIR41152.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-13]
gi|391486455|gb|EIR42485.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-15]
gi|391486548|gb|EIR42569.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-14]
gi|391501084|gb|EIR55520.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-16]
gi|391506158|gb|EIR60104.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-25]
gi|391517115|gb|EIR69950.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-29]
gi|391518917|gb|EIR71596.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-32]
gi|391531438|gb|EIR82932.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-36]
gi|391534305|gb|EIR85494.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-42]
gi|391536661|gb|EIR87623.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-45]
gi|391550077|gb|EIR99727.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-47]
gi|391550347|gb|EIR99969.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-48]
gi|391564613|gb|EIS12805.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-52]
gi|391566044|gb|EIS14081.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-53]
gi|391569386|gb|EIS16980.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-54]
gi|391579599|gb|EIS25700.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-55]
gi|391591637|gb|EIS36175.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-58]
gi|391595137|gb|EIS39212.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-60]
gi|391595868|gb|EIS39867.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-59]
gi|391609696|gb|EIS52066.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-61]
gi|391610048|gb|EIS52385.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-63]
gi|391623135|gb|EIS63973.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-65]
gi|391633409|gb|EIS72815.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-71]
gi|391648413|gb|EIS85930.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-88]
gi|391666018|gb|EIT01535.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-91]
gi|391675612|gb|EIT10109.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-92]
gi|391675850|gb|EIT10329.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-94]
gi|391689548|gb|EIT22669.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-95]
gi|391691498|gb|EIT24422.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-96]
gi|391693223|gb|EIT25990.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-98]
gi|391706602|gb|EIT38024.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-99]
gi|391707573|gb|EIT38908.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-100]
gi|391710357|gb|EIT41433.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-101]
gi|391722570|gb|EIT52360.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-102]
gi|391722697|gb|EIT52473.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-103]
gi|391723511|gb|EIT53184.1| ATP-dependent DNA helicase RecQ [Yersinia pestis PY-113]
gi|411173338|gb|EKS43383.1| ATP-dependent DNA helicase RecQ [Yersinia pestis INS]
Length = 610
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 242/398 (60%), Gaps = 22/398 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 131
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 132 LDQLYQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 187
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 188 TRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 243 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 303 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPAGAQQD 362
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 I---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|163754961|ref|ZP_02162082.1| ATP-dependent DNA helicase recQ [Kordia algicida OT-1]
gi|161325028|gb|EDP96356.1| ATP-dependent DNA helicase recQ [Kordia algicida OT-1]
Length = 700
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/399 (39%), Positives = 240/399 (60%), Gaps = 23/399 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ +FG+ FR Q + I ++ SG+D +MPTGGGKS+C+Q+PA+ G+ +V+S
Sbjct: 7 LKNTLKEYFGYDTFRPLQEEIINSIFSGKDNLVIMPTGGGKSICFQLPAILLEGLTIVIS 66
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLIALM++QV GL GIA +L+S+QT + IY ++D+GK ++LLY PE
Sbjct: 67 PLIALMKDQVDGLTTNGIAAAYLNSSQTEIEQQAIYSEIDAGK--IKLLYTAPES----- 119
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S L+ I S ++L+AIDEAHCISSWGHDFRP+Y L L+ P +P++ALTATA
Sbjct: 120 -LSYLEHIFSSQKISLIAIDEAHCISSWGHDFRPAYTNLGYLKKRFPSIPVIALTATADK 178
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D+ L + + +SF+R NL EVR +D + S + I+YC
Sbjct: 179 ATREDIANQLNIPHAKQHIASFDRKNLKLEVR---PANDRVKQIISFIDERPTESGIIYC 235
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R + ++ L I+ AYHAG+ RS + +D+I+ QV+ AT+AFGMGID+
Sbjct: 236 LSRKATETVAEKLQNANINAIAYHAGIAHTKRSKIQEDFINDTCQVICATIAFGMGIDKS 295
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H+N+PK++E +YQE GRAGRD LPS +LL++ D ++ + F
Sbjct: 296 NVRWVIHYNLPKNIEGYYQEIGRAGRDGLPSNTLLFHSYADVIQL------------KKF 343
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ + + ++ +M +Y + CRRK +L FGE +
Sbjct: 344 AESSGNVEVQLAKLDRMKEYADALSCRRKILLSYFGELI 382
>gi|374298589|ref|YP_005050228.1| ATP-dependent DNA helicase RecQ [Desulfovibrio africanus str.
Walvis Bay]
gi|332551525|gb|EGJ48569.1| ATP-dependent DNA helicase RecQ [Desulfovibrio africanus str.
Walvis Bay]
Length = 769
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/402 (41%), Positives = 237/402 (58%), Gaps = 11/402 (2%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
++LR FG+A F+ +Q + I V G D LMPTGGGKS+CYQIPAL +PG+ +VVSP
Sbjct: 29 AEILRTIFGYASFQGRQEEIITHVADGGDAVVLMPTGGGKSLCYQIPALLRPGLGVVVSP 88
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALM++QV GL + G+A L+S T + ED+ +G+ L LLYV PE P F
Sbjct: 89 LIALMQDQVGGLTQMGVAAACLNSALTPSAARSVIEDMLAGR--LDLLYVAPERAVRPDF 146
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L ++ L L AIDEAHC+S WGHDFRP YR+L+ L P VP +ALTATA
Sbjct: 147 LRLLGQVE----LALFAIDEAHCVSQWGHDFRPEYRELAVLGRAFPGVPRIALTATADEP 202
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYC 265
++D++ L L + +SF+RPNL Y V+ KD + L ++ + IVYC
Sbjct: 203 TRRDILAGLDLHGAALYCASFDRPNLRYIVKPKD---HPFRQLMEFIRREHPGEAGIVYC 259
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E +A L+ G+ YHAGL R +D ++ ++VATVAFGMG+D+
Sbjct: 260 LSRRKVEETAARLAKEGLRALPYHAGLPSSERERNMDAFMREEGLIMVATVAFGMGVDKP 319
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H + P+S+EA++QE+GRAGRD LP+ + + YG+ D M +L +++ S S
Sbjct: 320 NVRFVAHLDPPRSLEAYHQETGRAGRDGLPADAWMVYGLQDIVAMRAMLRGEEAQVSGSQ 379
Query: 386 STRERSSKK-SISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
+ K+ ++ YCE + CRR +L F E G
Sbjct: 380 DHDGLAHKRLEARKLDALLGYCETTACRRTVLLGYFDENFQG 421
>gi|347835082|emb|CCD49654.1| similar to recQ family helicase RecQ [Botryotinia fuckeliana]
Length = 480
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/426 (40%), Positives = 237/426 (55%), Gaps = 37/426 (8%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
LR F FR Q + I A L G D F T GKS+C+Q+PA+ GI +V+SPL++
Sbjct: 20 LRRIFKKTSFRPLQREVIVAALDGHDVFIQAATSFGKSLCFQLPAVIDQGITIVISPLLS 79
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM +QV L+ GI ++ + ++ DL+SG P RLLYVTPE +T F
Sbjct: 80 LMTDQVNALQSAGIVAGTINGNTAWPERQRLLADLESGHPLTRLLYVTPEYCSTDNFRKH 139
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ +H + L +A+DEAHCIS WGHDFR S++ LS R PD+PI+ LTATA +V+K
Sbjct: 140 LRTVHEQRELARIAVDEAHCISEWGHDFRKSFKNLSWFRQTFPDIPIICLTATATDQVRK 199
Query: 210 DVMESLCLQ--NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN----------- 256
DV+ ++CL N V + + NR NL YEVR+K D + D LK
Sbjct: 200 DVIGTMCLSETNLKVFRMTTNRENLHYEVRFKSDESDHFNDFLHWLKGVHRNRMENPERR 259
Query: 257 ----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
+ I+Y L R C+ L++ L GI AYHAGL + ++ L+ WI+
Sbjct: 260 AELEQKRERLDNVSGIIYTLFRQDCENLASRLRHSGIGARAYHAGLTHEEKTETLNRWIN 319
Query: 307 SRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364
+ K V+VAT AFGMGID+++VR V H+ IPKS E FYQE+GRAGRD S ++YY
Sbjct: 320 NDKGYDVIVATTAFGMGIDKENVRFVIHWQIPKSFEGFYQEAGRAGRDGKASIHIMYYSR 379
Query: 365 DDRRRMEFILSKNQSKNSQSFSTRERSS-KKSISDFSQMVDYCEGSG-CRRKKILESFGE 422
+DR R + N S +ER + + I+ +V YCE + CR K I + FGE
Sbjct: 380 EDRDR---------AYNRVSRDAKERVNLEARINSLKALVSYCEETDECRHKLICKYFGE 430
Query: 423 -QVLGC 427
+V C
Sbjct: 431 NEVPAC 436
>gi|253996326|ref|YP_003048390.1| ATP-dependent DNA helicase RecQ [Methylotenera mobilis JLW8]
gi|253983005|gb|ACT47863.1| ATP-dependent DNA helicase RecQ [Methylotenera mobilis JLW8]
Length = 611
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/394 (41%), Positives = 242/394 (61%), Gaps = 14/394 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR +Q + + +++G D LMPTGGGKS+CYQ+PAL + G+ +VVSPLIALM++
Sbjct: 19 FGYNSFRGEQQEIVDHMVAGGDALVLMPTGGGKSLCYQLPALLRQGVGIVVSPLIALMQD 78
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ FL+S+ + +K+ L G+ L++LYV PE P F+S L+++
Sbjct: 79 QVDALQQLGVKAAFLNSSLNSEEFSKVTAALLRGE--LQVLYVAPERLLIPNFLSLLEQV 136
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ L AIDEAHC+S WGHDFRP YRKL+ L P VP +ALTATA + +++E
Sbjct: 137 ADHIGIALFAIDEAHCVSQWGHDFRPEYRKLTVLHERFPHVPRIALTATADAPTRAEIIE 196
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCD 272
L L++ SSF+RPN+ Y V K +A L S +++ + + I+YCL R +
Sbjct: 197 RLALEDARQFISSFDRPNIKYRVLLK---ANARQQLESFIESEHPNDAGIIYCLSRRKVE 253
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
E + L A G YHAGL+ R + ++ ++VATVAFGMGID+ +VR V H
Sbjct: 254 ETAERLKAKGWDALPYHAGLDADIRHAHQRRFLREEGVIMVATVAFGMGIDKPNVRFVAH 313
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
++PKSME +YQE+GRAGRD LP+ + + YG+ D M+ +L +NS + + R+
Sbjct: 314 LDLPKSMEGYYQETGRAGRDGLPANAWMTYGLGDVVNMKQML-----ENSDAPAERQHVE 368
Query: 393 KKSISDFSQMVDYCEGSGCRRKKILESFGEQVLG 426
++ + ++ +CE + CR + IL FGEQ G
Sbjct: 369 RQKL---DALLGFCESTACRHQTILRYFGEQHPG 399
>gi|317057588|ref|YP_004106055.1| ATP-dependent DNA helicase RecQ [Ruminococcus albus 7]
gi|315449857|gb|ADU23421.1| ATP-dependent DNA helicase RecQ [Ruminococcus albus 7]
Length = 738
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/396 (41%), Positives = 233/396 (58%), Gaps = 10/396 (2%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FGH FR QL I A+LSG D +MPTG GKSMCYQIPAL GI +V+SPLI
Sbjct: 10 VLRDFFGHTDFRGGQLPLIDALLSGHDAVGIMPTGAGKSMCYQIPALMLDGITIVISPLI 69
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L + G+ +L+S+ TMQ + G +L+YV PE TP FM
Sbjct: 70 SLMKDQVNSLIQSGVRAAYLNSSLTMQQYNTALANASRGM--YKLIYVAPERLCTPSFME 127
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPKV 207
+ + ++LVA+DEAHC+S WG DFRP Y ++S + LP P + A TATA +V
Sbjct: 128 LARNVR----ISLVAVDEAHCVSQWGQDFRPHYLRISEFLSQLPYRPTVGAFTATATDQV 183
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ D+ L L +P+ + + F+R NL++ V + A + VL+ G +C I+YC
Sbjct: 184 RADISRLLGLDDPVCVTTGFDRENLYFGVTHAKDKYAAAKKI--VLENKG-SCGIIYCAT 240
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R DE+S L+A GI C YHAGL+ + R DD+I R ++ AT AFGMGID+ +V
Sbjct: 241 RKAVDEVSEKLTADGIPCTRYHAGLSAEERKKNQDDFIYDRVDLIAATNAFGMGIDKSNV 300
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
V H+N+PK++E +YQE+GRAGRD +K +L Y D +F++ ++ + T
Sbjct: 301 SFVLHYNMPKNIENYYQEAGRAGRDGSEAKCILLYSAKDIVTNKFLIENSRDNSELDDDT 360
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E K+ + M DYC C R+ IL+ FGE+
Sbjct: 361 SELVRKRDLQKLRSMTDYCNTGRCLRQFILDYFGEK 396
>gi|281204428|gb|EFA78623.1| ATP-dependent DNA helicase RecQ family protein [Polysphondylium
pallidum PN500]
Length = 1358
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 163/406 (40%), Positives = 254/406 (62%), Gaps = 15/406 (3%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E + R FG+ FR Q + I A ++G D F LMPTGGGKS+CYQIPAL G+ ++
Sbjct: 674 EKINSTNRNIFGNRSFRLNQEEIINASMAGHDIFVLMPTGGGKSLCYQIPALLADGLTII 733
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTA 142
+SPLI+L+++QV+ L+ L+ + + + +T+I+++L S P+++LLY+TPE +
Sbjct: 734 ISPLISLIQDQVMLLQNLSYPTAALTGSISSEEQTRIFKELRSDNPTIKLLYLTPEKVVQ 793
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ +S +++SRG L IDEAHC+S WGHDFRP Y++L+ L+ P +PILALTAT
Sbjct: 794 STSIISLFHQLNSRGKLIRAVIDEAHCVSQWGHDFRPDYKQLAILKREFPKLPILALTAT 853
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANG--D 258
A +V++DV+ +L +++ + K SFNRPNL Y V + K ++DD + + ANG
Sbjct: 854 ATERVKQDVIFNLSMKDSITFKQSFNRPNLIYAVVKKKKSIIDD----IIEFITANGYKQ 909
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC C++++ L++ G+ YHA + + R ++W R +++V+T+AF
Sbjct: 910 KSGIIYCFSTFECEKVAQELNSKGLKVKFYHAKMTPEDRQRTQENWTRDRVKIIVSTIAF 969
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ DVR V H ++PKS+E +YQESGRAGRD + +LYY D+ R++ +L +
Sbjct: 970 GMGINKPDVRFVIHHSLPKSLEGYYQESGRAGRDSQTAHCILYYSYADKYRIDSLLESSS 1029
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQ 423
+ S S RE + ++MV YCE S CRR+ L+ GEQ
Sbjct: 1030 GQGSTYQSIRENK-----DNLNKMVSYCENSVDCRRQLQLQYLGEQ 1070
>gi|375258339|ref|YP_005017509.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|402839822|ref|ZP_10888300.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
gi|423105828|ref|ZP_17093529.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|365907817|gb|AEX03270.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca KCTC 1686]
gi|376379689|gb|EHS92440.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5242]
gi|402287439|gb|EJU35887.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. OBRC7]
Length = 608
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 247/404 (61%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|359787299|ref|ZP_09290357.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
gi|359295428|gb|EHK59697.1| ATP-dependent DNA helicase RecQ [Halomonas sp. GFAJ-1]
Length = 608
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/402 (41%), Positives = 240/402 (59%), Gaps = 19/402 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A +K+L+ FG+ FR Q I+ V++G D LMPTGGGKS+CYQIPAL + G +VV
Sbjct: 8 AALKVLQEVFGYDSFRGPQQAIIEHVIAGGDALVLMPTGGGKSLCYQIPALLREGTAIVV 67
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ G+ +L+S+ + L +G+ L LLYV PE A P
Sbjct: 68 SPLIALMQDQVAALEQNGVRAAYLNSSLDYHEAVDVENRLRAGE--LDLLYVAPERLAMP 125
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ + + + L AIDEAHC+S WGHDFRP YR+LS L P VP +ALTATA
Sbjct: 126 ----RMQMLLEQTQIALFAIDEAHCVSQWGHDFRPEYRQLSHLHQRFPQVPRIALTATAD 181
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAI 262
+ D+ME L LQN + S F+RPN+ Y + +A L ++ NG+ I
Sbjct: 182 VPTRGDIMEHLQLQNAALYNSGFDRPNIRYHIAENQ--GNAKEQLLRFIREHHNGE-AGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R +E +A+L G++ YHAGL + R ++ V+VAT+AFGMGI
Sbjct: 239 VYCLSRRKVEETAAWLERQGLTALPYHAGLPAEQRQHHQTRFLREDGVVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H N+PKS+EA+YQE+GRAGRD LP+ + + YG+ D +++ Q +
Sbjct: 299 DKPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAYGLQD------VITLRQMQQG 352
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
S + +++ ++ D M+ CE CRR+ +L FG+ +
Sbjct: 353 SSAADQQKRIEQQKLD--AMLGLCEIISCRRQALLHYFGDHL 392
>gi|226323999|ref|ZP_03799517.1| hypothetical protein COPCOM_01776 [Coprococcus comes ATCC 27758]
gi|225207548|gb|EEG89902.1| ATP-dependent DNA helicase RecQ [Coprococcus comes ATCC 27758]
Length = 611
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 161/396 (40%), Positives = 233/396 (58%), Gaps = 10/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ FR Q I A+LSGRD ++PTG GKS+C+QIPAL GI LV+SPL
Sbjct: 5 QVLKQFFGYDGFRPGQEKLIDAILSGRDVLGILPTGAGKSICFQIPALMMGGITLVISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + G+ +L+S+ TM K G+ +++YV PE T FM
Sbjct: 65 ISLMKDQVASLNQAGVHAAYLNSSLTMGQYRKALAFAKEGR--YKIIYVAPERLETAEFM 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPIL-ALTATAAPK 206
+ ++++A+DEAHC+S WG DFRPSY K++ YLP P++ A TATA +
Sbjct: 123 DFAMSVD----ISMIAVDEAHCVSQWGQDFRPSYLKITEFVEYLPKRPVVSAFTATATKE 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V++D+++ L L++P V+ + ++RPNLF V++ + YA L + ++ + D C IVYCL
Sbjct: 179 VREDMIDILMLEDPEVVMTGYDRPNLFLAVQFPK---NKYAALKAFIEEHPDQCGIVYCL 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E A L G S YHAGL D+ R DD+I RKQ++VAT AFGMGID+ +
Sbjct: 236 TRKQVEENCALLEMDGFSVTRYHAGLTDQERRDNQDDFIYDRKQIMVATNAFGMGIDKSN 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK++E++YQE GR RD P + LL Y D + + N+
Sbjct: 296 VRFVVHYNMPKNLESYYQEVGRCARDGEPGECLLLYSGQDVITNQMFIENNRDNQELDEL 355
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
TR ++ +M YC C R IL FGE
Sbjct: 356 TRRIVIERDQERLKKMTYYCFTKECLRDYILRYFGE 391
>gi|381393391|ref|ZP_09919114.1| ATP-dependent DNA helicase RecQ [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330949|dbj|GAB54247.1| ATP-dependent DNA helicase RecQ [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 617
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 244/397 (61%), Gaps = 18/397 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+K+L+ FG+ +FRD Q D I++VL+G D L+PTGGGKS+CYQ+PAL GI +VVSP
Sbjct: 26 LKVLKKSFGYDEFRDGQWDVIESVLNGHDSLILLPTGGGKSICYQLPALVFEGITIVVSP 85
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L+ +G+ +++S+ + ++ L SG+ L +LYV PE F
Sbjct: 86 LISLMQDQVQQLQAQGVEAAYINSSLAPEEANEVTRKLHSGE--LDILYVAPERLLQSYF 143
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L+ ++ ++L+A+DEAHC+S WGHDFR YR+L +++ P+ P++ALTATA
Sbjct: 144 LRSLQTLN----ISLIAVDEAHCVSQWGHDFRKEYRRLHEVKHAFPNAPVIALTATADHA 199
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
Q D++ L L NP V K F+RPN+ Y + K D D + N IVYC
Sbjct: 200 TQADIVYQLGLNNPFVYKGGFDRPNIRYNLLAKYKGGDQVLDFVKQQRGN---SGIVYCN 256
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R D+L A L GISC AYHAG + + R V + +++ QVV+ATVAFGMGI++ +
Sbjct: 257 SRAKVDDLVAKLQKAGISCGAYHAGKDTQEREHVQNLFLADDLQVVIATVAFGMGINKSN 316
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H ++P+S+E+FYQE+GRAGRD +P+++LL + D R++ ++ +
Sbjct: 317 VRFVVHHDVPRSIESFYQETGRAGRDGMPAEALLLFDDKDAARIKKWIADG--------A 368
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
T ER + + F M + E CRR+ +L FG+
Sbjct: 369 TSERFGIE-MHKFEAMQAFAEAQTCRRQVLLNYFGDH 404
>gi|399018929|ref|ZP_10721080.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
gi|398098859|gb|EJL89138.1| ATP-dependent DNA helicase RecQ [Herbaspirillum sp. CF444]
Length = 614
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 170/414 (41%), Positives = 248/414 (59%), Gaps = 35/414 (8%)
Query: 20 LHEKEA-LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
+HE+++ + +L FG++ FR +Q D ++ V+ G D LMPTGGGKS+CYQIPAL +
Sbjct: 9 VHEQQSRALHILETVFGYSSFRGQQGDIVRHVVQGGDALVLMPTGGGKSLCYQIPALVRD 68
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
G+ +VVSPLIALM++QV L E G+ FL+STQT +I + SG L +LYV P
Sbjct: 69 GVGVVVSPLIALMQDQVDALAEVGVRAAFLNSTQTFDEAMQIERRVRSG--DLDVLYVAP 126
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E TP + L+ H + L AIDEAHC+S WGHDFRP Y KLS L P+VP +A
Sbjct: 127 ERLMTPRCLELLEAAH----IALFAIDEAHCVSQWGHDFRPEYIKLSVLHERFPNVPRIA 182
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV-----RYKDLLDDAYADLCSVL 253
LTATA + +++++ L L++ SSF+RPN+ Y++ K LLD +
Sbjct: 183 LTATADQQTREEIIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLD-------FIE 235
Query: 254 KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
+ D +VYCL R +E + +L GI+ YHAG++ R++ ++ K V+V
Sbjct: 236 SEHADDAGVVYCLSRKKVEETAEFLKQSGINALPYHAGMDYAKRTANQARFLREDKIVMV 295
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRM 370
AT+AFGMGID+ DVR V H ++PKS+E +YQE+GRAGRD LP+ + + YG+ D +RRM
Sbjct: 296 ATIAFGMGIDKPDVRFVAHLDLPKSIEGYYQETGRAGRDGLPANAWMAYGLQDVVQQRRM 355
Query: 371 EFILSKNQSKNSQSFSTRERSSKKSIS-DFSQMVDYCEGSGCRRKKILESFGEQ 423
+S+ ++F K+ + M+ CE CRR ++L+ FG+
Sbjct: 356 -----IAESEADETF-------KRVLGIKLDAMLGLCETLHCRRVRLLDYFGQH 397
>gi|282880882|ref|ZP_06289575.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
gi|281305264|gb|EFA97331.1| ATP-dependent DNA helicase RecQ [Prevotella timonensis CRIS 5C-B1]
Length = 725
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 232/403 (57%), Gaps = 21/403 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L+ +FG F+ +Q I +L+G F LMPTGGGKS+CYQ+P+L G +VVS
Sbjct: 7 LTEKLKLYFGFDSFKGEQEAIINHLLAGNSAFVLMPTGGGKSLCYQLPSLLMEGTAIVVS 66
Query: 86 PLIALMENQVI---GLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
PLIALM+NQV G+ E+ FL+S+ ++ +D+ +G+ +LLYV PE
Sbjct: 67 PLIALMKNQVDVINGISEEEGVAHFLNSSLNKAAIQQVMDDVRAGRT--KLLYVAPESLN 124
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
+ K + ++ AIDEAHCIS WGHDFRP YR + N + D P++ALTAT
Sbjct: 125 KEENIEFFKTVK----ISFYAIDEAHCISEWGHDFRPEYRNIRPTINKIGDAPVIALTAT 180
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A KV+ D+ SL + + KSSFNRPNL+YE+R K D + ++ + I
Sbjct: 181 ATDKVRTDIKRSLGIADAREFKSSFNRPNLYYEIRQKS--SDIDKQIIMFIRQHEGKSGI 238
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YCL R +ELS L A I A YHAGL+ RS DD++ R V+VAT+AFGMGI
Sbjct: 239 IYCLSRKKVEELSEVLKANNIKAAPYHAGLDSVTRSQTQDDFLMERIDVIVATIAFGMGI 298
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H++IPKS+E +YQE+GRAGRD + +Y D +++E K
Sbjct: 299 DKPDVRFVIHYDIPKSLEGYYQETGRAGRDGGEGICIAFYAQKDLKKLE--------KFM 350
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
+ E+ + + + Y E S CRRK +L FGE+ L
Sbjct: 351 EGKPVAEQDIGRQL--LQETAAYAESSVCRRKMLLHYFGEEYL 391
>gi|257464903|ref|ZP_05629274.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
gi|257450563|gb|EEV24606.1| ATP-dependent DNA helicase RecQ [Actinobacillus minor 202]
Length = 604
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 242/389 (62%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ QFR Q + I+AVL+G D +M TGGGKS+CYQ+PAL G+ LV+SPLI+LM++
Sbjct: 15 FGYQQFRQGQQEIIEAVLNGLDTLVIMTTGGGKSLCYQVPALCIEGLTLVISPLISLMKD 74
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +++STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 75 QVDQLLTNGIEAGYINSTQTFEEQQLVEQKAISGQ--LKLLYLSPEKVMTQGFFHFI--- 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L LR+ P VP++ALTATA P + D++
Sbjct: 130 -SHCKISLIAVDEAHCVSQWGHDFRPEYTLLGGLRSAFPKVPMMALTATADPTTRHDIIH 188
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L LQ+P SF+RPN+ Y V+ K + A + K G + IVYC R +E
Sbjct: 189 HLRLQDPHTYLGSFDRPNIRYTVQEKFKPMEQLAKF--IAKQQGKS-GIVYCNSRKKVEE 245
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ LSA G+S YHAG+ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 246 ITEKLSARGVSVMGYHAGMTIQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVAHF 305
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ +L + ++ ++
Sbjct: 306 DLPRSIESYYQETGRAGRDDLPSEAILFYDPADYAWLQKVLLEEPESEQRNI---KQHKL 362
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
++IS F+ E CRR +L FGE
Sbjct: 363 QAISAFA------ESQTCRRLVLLNYFGE 385
>gi|448747210|ref|ZP_21728871.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Halomonas
titanicae BH1]
gi|445565122|gb|ELY21234.1| DNA helicase, ATP-dependent, RecQ type, bacterial [Halomonas
titanicae BH1]
Length = 626
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/401 (41%), Positives = 239/401 (59%), Gaps = 17/401 (4%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
A +K+L+ FG+ FR Q I+ V++G D LMPTGGGKS+CYQIPAL + G +VV
Sbjct: 22 AALKVLQEVFGYDSFRGPQQAIIEHVMAGGDALVLMPTGGGKSLCYQIPALLREGTAIVV 81
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L++ G+ +L+S+ ++ L +G+ L LLYV PE ATP
Sbjct: 82 SPLIALMQDQVAALEQNGVRAAYLNSSLDYHEAVEVENRLRAGE--LDLLYVAPERLATP 139
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ + + + L AIDEAHC+S WGHDFRP YR+LS L P VP +ALTATA
Sbjct: 140 ----RMQMLLEQTRIALFAIDEAHCVSQWGHDFRPEYRQLSQLHQRFPLVPRIALTATAD 195
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIV 263
+ D+ME L LQ + S F+RPN+ Y + +A L ++ + D IV
Sbjct: 196 VPTRGDIMEHLQLQEAALYNSGFDRPNIRYHIAENQ--GNAKEQLLRFIREHHDGEAGIV 253
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R +E +A+L G++ YHAGL + R ++ VVVAT+AFGMGID
Sbjct: 254 YCLSRRKVEETAAWLERQGLTALPYHAGLPPEQRQHHQTRFLREDGVVVVATIAFGMGID 313
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H N+PKS+EA+YQE+GRAGRD LP+ + + +G+ D I + ++S
Sbjct: 314 KPDVRFVAHLNLPKSIEAYYQETGRAGRDGLPADAWMAFGLQD-----VITLRQMQQDSS 368
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
+ ++R ++ + M+ CE CRR+ +L FG+ +
Sbjct: 369 AADHQKRIEQQKL---DAMLGLCEIISCRRQALLHYFGDHL 406
>gi|345866766|ref|ZP_08818787.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
gi|344048686|gb|EGV44289.1| ATP-dependent DNA helicase RecQ [Bizionia argentinensis JUB59]
Length = 733
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 241/399 (60%), Gaps = 24/399 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG + F+ Q ++++LSG+D F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 12 LKTYFGFSAFKGLQEPVVKSILSGKDTFVIMPTGGGKSLCYQLPALMQEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ G+A SS +++ ++ ED+ SG +LLYV PE
Sbjct: 72 LMKNQVDAIRGISDHDGVAHVLNSSLNKTEIR-QVKEDITSG--ITKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L S+ + D +PI+ LTATA
Sbjct: 129 NVEFLRSVK----ISFMAVDEAHCISEWGHDFRPEYRNLKSIIERIGDNIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YEVR K DA D+ +K IVY
Sbjct: 185 PKVQEDILKNLNINDAKTFKASFNRPNLYYEVRPKTKHVDA--DIIRFVKKYEGKSGIVY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K+R+ D ++ VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQTLQVNGIKAVPYHAGLDAKSRARHQDMFLMEDVDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E +S
Sbjct: 303 PDVRFVIHHDIPKSIESYYQETGRAGRDGGEGYCLAFYAYKDIEKLEKFMSGK------- 355
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
E+ ++ ++V + E S RRK IL FGE+
Sbjct: 356 -PVAEQEIGHAL--LQEVVAFAETSISRRKFILHYFGEE 391
>gi|196228960|ref|ZP_03127826.1| ATP-dependent DNA helicase RecQ [Chthoniobacter flavus Ellin428]
gi|196227241|gb|EDY21745.1| ATP-dependent DNA helicase RecQ [Chthoniobacter flavus Ellin428]
Length = 610
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 238/400 (59%), Gaps = 20/400 (5%)
Query: 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84
+L+ L+ FG+ FR Q + I L+GRD F L+PTGGGKS+C+Q+PAL + G+ +VV
Sbjct: 6 SLLATLKQTFGYDSFRPLQEEIITDALAGRDVFALLPTGGGKSLCFQLPALLRDGLTVVV 65
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
SPLIALM++QV L G+ FL+ST + L G+ RLLY PE P
Sbjct: 66 SPLIALMKDQVDALTATGVPATFLNSTLDGDEARARFRGLHRGE--FRLLYAAPERLMLP 123
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
GF+ L+ + + +AIDEAHCIS WGHDFRP YR+L+ LR LPDVP++ALTATA
Sbjct: 124 GFVDNLRAWN----VTQIAIDEAHCISEWGHDFRPEYRQLADLRETLPDVPMMALTATAT 179
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
+V+ D++E L L++P +SFNRPNL Y V + Y + + L++ I+Y
Sbjct: 180 ERVRADIIERLRLRDPRCYTASFNRPNLTYRVVPR---AQPYDQVLAFLRSRPGESGIIY 236
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R + ++ L+ IS YHAGL + R + ++ +V+ AT+AFGMGI++
Sbjct: 237 CSSRKATESVAERLADDRISAKPYHAGLTAEERGRHQELFLRDEVRVICATIAFGMGINK 296
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK-SLLYYGMDDRRRMEFILSKNQSKNSQ 383
+VR V H+++PK++E +YQE+GRAGRD LP + LL+ D ++ FI K +
Sbjct: 297 PNVRFVLHYDLPKNIEGYYQETGRAGRDGLPGECVLLFSAADVVKQTSFIEEKTDPE--- 353
Query: 384 SFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
ER + + QMV + E S CRR ++L FGE+
Sbjct: 354 -----ERRIAR--AQLQQMVHFAESSACRRVELLGYFGEE 386
>gi|21232378|ref|NP_638295.1| DNA helicase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66767490|ref|YP_242252.1| DNA helicase [Xanthomonas campestris pv. campestris str. 8004]
gi|384428940|ref|YP_005638300.1| ATP-dependent DNA helicase RecQ [Xanthomonas campestris pv. raphani
756C]
gi|21114154|gb|AAM42219.1| DNA helicase [Xanthomonas campestris pv. campestris str. ATCC
33913]
gi|66572822|gb|AAY48232.1| DNA helicase [Xanthomonas campestris pv. campestris str. 8004]
gi|341938043|gb|AEL08182.1| ATP-dependent DNA helicase RecQ [Xanthomonas campestris pv. raphani
756C]
Length = 600
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 235/404 (58%), Gaps = 23/404 (5%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P HE LL FG+ FR Q ++ V +G D LMPTGGGKS+CYQ+PAL +
Sbjct: 4 PAHE------LLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRD 57
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
GI +VVSPLIALM++QV L++ G+ EFL+ST + ++ L SG L LLYV P
Sbjct: 58 GIGIVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENTQRVERALLSG--DLDLLYVAP 115
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E TP F+S L+ R + L AIDEAHC+S WGHDFRP YR+L+ L P +P +A
Sbjct: 116 ERLLTPRFLSLLE----RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMA 171
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA P Q+++ E L L SSF+RPN+ Y V KD +A L L +
Sbjct: 172 LTATADPPTQREIAERLDLVEARHFVSSFDRPNIRYTVVQKD---NARKQLQEFLGRHRG 228
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVY + R +E + L A G + YHAGL + R+ ++ ++ AT+AF
Sbjct: 229 SAGIVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAF 288
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQE+GRAGRD P+++ L YG+ D +L K
Sbjct: 289 GMGIDKPDVRFVAHVDLPKSMEGYYQETGRAGRDGEPAEAWLCYGLGD-----VVLLKQM 343
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ ++ R+R + + ++ YCE CRR+ +L FGE
Sbjct: 344 IEQGEAAEERKRLER---AKLDHLLGYCESMQCRRQVLLAGFGE 384
>gi|423298844|ref|ZP_17276869.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
gi|408474193|gb|EKJ92712.1| ATP-dependent DNA helicase RecQ [Bacteroides finegoldii CL09T03C10]
Length = 601
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 165/394 (41%), Positives = 239/394 (60%), Gaps = 21/394 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG+ FR Q + I+ +L+ +D LMPTGGGKS+CYQ+PAL G +VVSPLI+
Sbjct: 5 LKTYFGYDSFRPLQEEIIRHILNKQDALVLMPTGGGKSICYQLPALLSEGTAIVVSPLIS 64
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMS 148
LM++QV GL+ GIA L+S+ + +GK L+LLY++PE L A ++
Sbjct: 65 LMKDQVEGLQANGIAAGALNSSNDETENANLRRSCVAGK--LKLLYISPEKLLAEKDYL- 121
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L+ ++ ++L AIDEAHCIS WGHDFRP Y ++ L P VPI+ALTATA +
Sbjct: 122 -LRDMN----ISLFAIDEAHCISQWGHDFRPEYTQMGVLHQQFPQVPIIALTATADKITR 176
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D++ L L P SSF+RPN+ V+ + + ++ +G I+YC+ R
Sbjct: 177 EDIIRQLHLIRPRTFISSFDRPNISLTVKRGFQAKEKNKAIIEFIQRHGKESGIIYCMSR 236
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ + ++ L GI C YHAGL+ + R DD+I+ R QVV AT+AFGMGID+ +VR
Sbjct: 237 SKTETVAQMLLKQGIRCGVYHAGLSAQQRDETQDDFINDRIQVVCATIAFGMGIDKSNVR 296
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+N+PKS+E+FYQE GRAGRD LPS ++L+Y + D +L+K S++SQ
Sbjct: 297 WVIHYNLPKSIESFYQEIGRAGRDGLPSDTVLFYSLGDL----ILLTKFASESSQ----- 347
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K ++ +M Y E CRR+ +L FGE
Sbjct: 348 ---QKINLEKLQRMQQYAEADICRRRILLSYFGE 378
>gi|238892418|ref|YP_002917152.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|365144577|ref|ZP_09348793.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|378976322|ref|YP_005224463.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386037440|ref|YP_005957353.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|402783066|ref|YP_006638612.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419976110|ref|ZP_14491512.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981887|ref|ZP_14497157.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987417|ref|ZP_14502537.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419992987|ref|ZP_14507936.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999205|ref|ZP_14513983.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420004974|ref|ZP_14519604.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010567|ref|ZP_14525038.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420016807|ref|ZP_14531094.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420022207|ref|ZP_14536378.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027870|ref|ZP_14541857.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033622|ref|ZP_14547424.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420039320|ref|ZP_14552956.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420045195|ref|ZP_14558666.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420051125|ref|ZP_14564416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056758|ref|ZP_14569910.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420061820|ref|ZP_14574803.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420068079|ref|ZP_14580864.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420073504|ref|ZP_14586129.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079309|ref|ZP_14591756.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420085306|ref|ZP_14597536.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421908873|ref|ZP_16338705.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421917229|ref|ZP_16346791.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424833268|ref|ZP_18257996.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|424930893|ref|ZP_18349265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425084062|ref|ZP_18487159.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425094091|ref|ZP_18497174.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428151187|ref|ZP_18998930.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428934219|ref|ZP_19007747.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|428939135|ref|ZP_19012250.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|238544734|dbj|BAH61085.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|339764568|gb|AEK00789.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae KCTC 2242]
gi|363648000|gb|EHL87187.1| ATP-dependent DNA helicase recQ [Klebsiella sp. 4_1_44FAA]
gi|364515733|gb|AEW58861.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341372|gb|EJJ34552.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397342014|gb|EJJ35183.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397344702|gb|EJJ37833.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358598|gb|EJJ51314.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359601|gb|EJJ52294.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397363627|gb|EJJ56265.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397374431|gb|EJJ66767.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397378264|gb|EJJ70477.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397385030|gb|EJJ77135.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392581|gb|EJJ84369.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394580|gb|EJJ86306.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397403296|gb|EJJ94873.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397409845|gb|EJK01145.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397410215|gb|EJK01502.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420262|gb|EJK11348.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397427007|gb|EJK17798.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397429873|gb|EJK20579.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397437837|gb|EJK28380.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397443829|gb|EJK34130.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397449321|gb|EJK39461.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|402543905|gb|AFQ68054.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405597672|gb|EKB70935.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405610253|gb|EKB83062.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407805080|gb|EKF76331.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|410117240|emb|CCM81330.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410120477|emb|CCM89416.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414710718|emb|CCN32422.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426303386|gb|EKV65559.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae JHCK1]
gi|426304490|gb|EKV66633.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae VA360]
gi|427538860|emb|CCM95068.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
Length = 608
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|188990600|ref|YP_001902610.1| DNA helicase [Xanthomonas campestris pv. campestris str. B100]
gi|167732360|emb|CAP50552.1| DNA helicase [Xanthomonas campestris pv. campestris]
Length = 600
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 235/404 (58%), Gaps = 23/404 (5%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP 78
P HE LL FG+ FR Q ++ V +G D LMPTGGGKS+CYQ+PAL +
Sbjct: 4 PAHE------LLSRVFGYDDFRGPQQAIVEHVAAGNDALVLMPTGGGKSLCYQVPALLRD 57
Query: 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138
GI +VVSPLIALM++QV L++ G+ EFL+ST + ++ L SG L LLYV P
Sbjct: 58 GIGIVVSPLIALMQDQVEALRQLGVRAEFLNSTLDAENTQRVERALLSG--DLDLLYVAP 115
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E TP F+S L+ R + L AIDEAHC+S WGHDFRP YR+L+ L P +P +A
Sbjct: 116 ERLLTPRFLSLLE----RSRIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPHIPRMA 171
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258
LTATA P Q+++ E L L SSF+RPN+ Y V KD +A L L +
Sbjct: 172 LTATADPPTQREIAERLDLVEARHFVSSFDRPNIRYTVVQKD---NARKQLQEFLGRHRG 228
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
+ IVY + R +E + L A G + YHAGL + R+ ++ ++ AT+AF
Sbjct: 229 SAGIVYAMSRRKVEETAQQLCAQGFNALPYHAGLPAEVRAENQRRFLREDGIIMAATIAF 288
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQE+GRAGRD P+++ L YG+ D +L K
Sbjct: 289 GMGIDKPDVRFVAHVDLPKSMEGYYQETGRAGRDGEPAEAWLCYGLGD-----VVLLKQM 343
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ ++ R+R + + ++ YCE CRR+ +L FGE
Sbjct: 344 IEQGEAAEERKRLER---AKLDHLLGYCESMQCRRQVLLAGFGE 384
>gi|419765474|ref|ZP_14291711.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
gi|397741738|gb|EJK88959.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae DSM 30104]
Length = 608
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|423111286|ref|ZP_17098981.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
gi|423117298|ref|ZP_17104989.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376376415|gb|EHS89194.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5245]
gi|376377058|gb|EHS89832.1| ATP-dependent DNA helicase recQ [Klebsiella oxytoca 10-5243]
Length = 608
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 247/404 (61%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLSDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|114045876|ref|YP_736426.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
gi|113887318|gb|ABI41369.1| ATP-dependent DNA helicase RecQ [Shewanella sp. MR-7]
Length = 607
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 244/409 (59%), Gaps = 25/409 (6%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PL ++ A V FG+ FRD Q + I+ V SG DC +MPTGGGKS+CYQ+PAL
Sbjct: 10 DDPLSQRLAQV------FGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALL 63
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PGI +VVSPLI+LM++QV L + G+ +L+S+Q + ++ L G+ L+LLYV
Sbjct: 64 MPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSLEVLRQLHRGE--LKLLYV 121
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L+ P VP+
Sbjct: 122 SPERLLTADFIERMRSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPLVPM 177
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA ++++ E L + NP L SSF+RPN+ Y V K L+ A +L+ N
Sbjct: 178 MALTATADQATRQNICERLGI-NPFKLLSSFDRPNIRYTVAEK--LNAANQLRQFLLQQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G + IVYC R DE++ L+ G AYHAG+ + R V D ++ + +VVATV
Sbjct: 235 G-SSGIVYCSSRRRVDEVAERLTLQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATV 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D R+ ++ +
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQ 353
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
++ Q + M + E CRR+ +L F E L
Sbjct: 354 SEPGPQQQV---------DFHKLNTMAAFAEAQTCRRQVLLHYFDESAL 393
>gi|238793565|ref|ZP_04637189.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
gi|238727155|gb|EEQ18685.1| ATP-dependent DNA helicase recQ [Yersinia intermedia ATCC 29909]
Length = 610
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 167/398 (41%), Positives = 241/398 (60%), Gaps = 22/398 (5%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+ LVVSP
Sbjct: 14 VQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSP 73
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F
Sbjct: 74 LISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESF 131
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ +L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 132 LDQLYQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEA 187
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVY 264
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+Y
Sbjct: 188 TRGDIVRLLNLDQPLIQISSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
C R ++ +A L + G+S AAYHAGL+++ R V + + QVVVATVAFGMGI++
Sbjct: 243 CNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRGQVQEAFQRDDLQVVVATVAFGMGINK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 303 PNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQD 362
Query: 385 FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 I---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|302878781|ref|YP_003847345.1| ATP-dependent DNA helicase RecQ [Gallionella capsiferriformans
ES-2]
gi|302581570|gb|ADL55581.1| ATP-dependent DNA helicase RecQ [Gallionella capsiferriformans
ES-2]
Length = 610
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 157/389 (40%), Positives = 232/389 (59%), Gaps = 12/389 (3%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR +Q ++ + +G D LMPTGGGKS+CYQIP+L + G +V+SPLIALM++
Sbjct: 13 FGYTTFRGEQQAIVEHIATGGDALVLMPTGGGKSLCYQIPSLLRAGTGIVISPLIALMQD 72
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ +L+S+ + ++ L G+ L LLYV PE F+ L+++
Sbjct: 73 QVEALQQLGVRAAYLNSSLSTDTAREVQGQLMRGE--LDLLYVAPERLMNANFLGLLEQV 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+R L L AIDEAHC+S WGHDFRP YR+L+ LR+ P VP +ALTATA +++++E
Sbjct: 131 QTRHGLALFAIDEAHCVSQWGHDFRPEYRELTILRDRFPAVPRIALTATADAPTRREIVE 190
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L+ SSF+RPN+ Y++ KD + + + K + D IVYCL R DE
Sbjct: 191 RLSLEQAREFVSSFDRPNIRYKITNKDSVINQLQYFIN--KEHPDEAGIVYCLSRRRVDE 248
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+A L A G YHAGL+ R++ ++ ++VATVAFGMGID+ +VR V H
Sbjct: 249 TAAKLKALGWDALPYHAGLDAATRAANQSRFLREEGVIMVATVAFGMGIDKPNVRFVAHI 308
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++PKSME +YQE+GRAGRD LP+ + + YG+ D M +L + E +
Sbjct: 309 DLPKSMEGYYQETGRAGRDGLPADAWMAYGLGDVVSMRQMLLSGDAP--------EERKR 360
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ ++ +CE + CR + +L FGE
Sbjct: 361 VELQKLDALLGFCESTACRHQTLLRYFGE 389
>gi|429961617|gb|ELA41162.1| RecQ family ATP-dependent DNA helicase [Vittaforma corneae ATCC
50505]
Length = 733
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 168/412 (40%), Positives = 247/412 (59%), Gaps = 16/412 (3%)
Query: 17 NKPLHEKEALVKL--LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA 74
N P + ++L LR F FR Q + I+A L+ D F LMPTGGGKS+CYQ+PA
Sbjct: 148 NNPTSMEPVTIQLYFLRNVFNLENFRGNQEEIIKAALNKEDIFVLMPTGGGKSLCYQLPA 207
Query: 75 LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134
+ + G+ +V+SPL++L+ +QV L K I L+S T +T I + L + S++++
Sbjct: 208 MIQDGLTVVISPLLSLIHDQVSNLLNKNIPAVALNSNCTYSERTLIMKTLQACH-SVKIV 266
Query: 135 YVTPEL-TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193
YVTPEL + F + L ++ RG L IDEAHC+S WGHDFRP Y++L ++ P
Sbjct: 267 YVTPELLNKSTQFSNILHELDRRGRLCRFVIDEAHCVSQWGHDFRPDYKELGIIKRKFPR 326
Query: 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL 253
+P++ALTATA KV+ DV+ SL ++ V + SFNRPNL Y V K + D+ S +
Sbjct: 327 IPLIALTATATKKVELDVLNSLGIEGCKVFRQSFNRPNLKYYVMSK--TKKSLTDIVSFV 384
Query: 254 KAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312
++ I+YC + C+E+S L+ + YHAGL+ + R+ V + W +++
Sbjct: 385 HTYYPNSPGIIYCTSKKDCEEMSEKLNEH-LKTTFYHAGLSKRERNKVQEMWNDGTIKII 443
Query: 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372
VAT+AFGMGID+ DVR V H+++PKS+E +YQE+GRAGRD L S +LYY D + +EF
Sbjct: 444 VATIAFGMGIDKSDVRFVIHYSLPKSLEGYYQETGRAGRDGLESVCILYYNYGDTKTIEF 503
Query: 373 ILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ 423
+++ N + S R+R K + V YCE + CRRK +L FGE
Sbjct: 504 LIANNHNATSDQ-KNRQREELKYV------VQYCENKTDCRRKLVLSHFGEN 548
>gi|330993558|ref|ZP_08317493.1| ATP-dependent DNA helicase recQ [Gluconacetobacter sp. SXCC-1]
gi|329759588|gb|EGG76097.1| ATP-dependent DNA helicase recQ [Gluconacetobacter sp. SXCC-1]
Length = 597
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 160/391 (40%), Positives = 237/391 (60%), Gaps = 17/391 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG FR Q A+ V++GRDC LMPTGGGKS+CYQ+PALA+PG LV+SPLIALM++
Sbjct: 6 FGFPDFRGLQQQAVDEVMAGRDCLVLMPTGGGKSVCYQVPALARPGTGLVISPLIALMDD 65
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L++ G+ L S ++ DL +G+ L +LYV+PE +PG + +L ++
Sbjct: 66 QVAALRQLGVNAGALHSELEPDEAARVRADLVAGR--LDILYVSPERLLSPGMLERLGRL 123
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
L+++AIDEAHCIS+WGH+FRP YR+L++L + P VP +ALTATA + + D++E
Sbjct: 124 ----TLSVIAIDEAHCISAWGHEFRPEYRELAALPQHFPHVPRIALTATADARTRSDILE 179
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
+L + + VLK+SF+RPNL VR K L ++L + +IVYC R+ +
Sbjct: 180 ALAMPDATVLKASFHRPNLDIAVRPK---TSELRQLTAILDRHRGAASIVYCGSRSKTER 236
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L G +HAGL+ + + L + S V+VAT+AFGMGIDR DVR V H
Sbjct: 237 VARSLVGKGYPALPFHAGLSPVEKRAALMRFRSGEPVVIVATIAFGMGIDRPDVRAVVHL 296
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P S E +YQ+ GRAGRD ++++L G DD R + L ++ + ++Q R
Sbjct: 297 DMPSSPEGYYQQIGRAGRDGEQAETVLLDGGDDMARARYWLEQSNAPDAQKRIMSAR--- 353
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGEQV 424
M+ E +GCR + +L FGE++
Sbjct: 354 -----LEAMIALTETTGCRTQSLLSCFGEEL 379
>gi|147559|gb|AAA24517.1| recQ [Escherichia coli]
Length = 610
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|432555903|ref|ZP_19792618.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
gi|431080717|gb|ELD87511.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE47]
Length = 611
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 241/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR+V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRVVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|432682606|ref|ZP_19917956.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
gi|431216878|gb|ELF14470.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE143]
Length = 611
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKAEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|340621987|ref|YP_004740439.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
gi|339902253|gb|AEK23332.1| ATP-dependent DNA helicase recQ [Capnocytophaga canimorsus Cc5]
Length = 729
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 169/408 (41%), Positives = 246/408 (60%), Gaps = 28/408 (6%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K L L+ +FG F+ +Q + +++V++ ++ F +MPTGGGKS+CYQ+PA+ G +
Sbjct: 5 KNDLQSALKHYFGFDTFKGQQEEIVRSVINRQNTFVIMPTGGGKSLCYQLPAMVSKGTAI 64
Query: 83 VVSPLIALMENQVIGLKEKGIA-----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137
V+SPLIALM+NQV ++ GI+ L+S+ ++ ED+ S K +LLYV
Sbjct: 65 VISPLIALMKNQVDAMR--GISSTDSVAHVLNSSLNKGEIREVMEDIRSKKT--KLLYVA 120
Query: 138 PELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPI 196
PE + + LK I ++ VA+DEAHCIS WGHDFRP YR + ++ + L + +P+
Sbjct: 121 PESLTKDEYANFLKTID----ISFVAVDEAHCISEWGHDFRPEYRNIKTIIDRLGEGIPV 176
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA PKVQ D++++L + V K+SFNRPNL+YEVR K + AD+ +K +
Sbjct: 177 VALTATATPKVQDDILKNLGMAEANVFKASFNRPNLYYEVRPK--TKNVDADIIRFVKQH 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
I+YCL R +ELS L GI+ YHAGL+ K R+ D ++ VVVAT+
Sbjct: 235 SKKSGIIYCLSRKKVEELSQTLQVNGITAVPYHAGLDAKTRAKHQDMFLMEEVDVVVATI 294
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILS 375
AFGMGID+ DVR V H +IPKS+E++YQE+GRAGRD L +Y D ++E F++
Sbjct: 295 AFGMGIDKPDVRFVIHHDIPKSIESYYQETGRAGRDGGEGHCLAFYSYKDVEKLEKFMVG 354
Query: 376 KNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
K E+ +++ +V Y E S RRK IL FGE+
Sbjct: 355 K---------PIAEQEIGQAL--LQDIVAYAETSSSRRKFILHYFGEE 391
>gi|425078981|ref|ZP_18482083.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425084628|ref|ZP_18487721.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405589261|gb|EKB62831.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405608866|gb|EKB81789.1| ATP-dependent DNA helicase recQ [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
Length = 608
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/404 (41%), Positives = 246/404 (60%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRIPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|148221|gb|AAA67618.1| DNA-dependent ATPase, DNA helicase [Escherichia coli str. K-12
substr. MG1655]
Length = 610
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAAALQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|419839751|ref|ZP_14363154.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
gi|386909096|gb|EIJ73776.1| ATP-dependent DNA helicase RecQ [Haemophilus haemolyticus HK386]
Length = 619
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/405 (40%), Positives = 244/405 (60%), Gaps = 24/405 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKTTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQRVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S ++ +AIDEAHCIS WGHDFRP Y +L L+ P PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVSFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPHAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L+NP SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATRQDILTHLNLENPHRYIGSFDRPNIRYTLEEKYKPM-----EQLIRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAFRERVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQ 378
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ +L K +
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPE 360
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423
+ Q E+ ++I +F+ E CRR +L FGE
Sbjct: 361 TPQRQI----EQHKLEAIGEFA------ESQTCRRLVLLNYFGEH 395
>gi|152972806|ref|YP_001337952.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|329997483|ref|ZP_08302785.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|449059651|ref|ZP_21737339.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
gi|150957655|gb|ABR79685.1| ATP-dependent DNA helicase [Klebsiella pneumoniae subsp. pneumoniae
MGH 78578]
gi|328539051|gb|EGF65090.1| ATP-dependent DNA helicase RecQ [Klebsiella sp. MS 92-3]
gi|448874669|gb|EMB09708.1| ATP-dependent DNA helicase RecQ [Klebsiella pneumoniae hvKP1]
Length = 608
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/403 (41%), Positives = 245/403 (60%), Gaps = 23/403 (5%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I+ L GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQETIIETALEGRDCLVVMPTGGGKSLCYQVPALVMGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--VRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L ++A+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLANWN----LAMLAVDEAHCISQWGHDFRPEYAALGQLRQRMPQIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA ++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADDTTRRDIVRLLGLNDPLIQVSSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFG
Sbjct: 238 SGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENDVRAEVQEKFQRDDLQIVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEE 354
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 355 KPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|343501055|ref|ZP_08738938.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|418477793|ref|ZP_13046915.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
gi|342819043|gb|EGU53890.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii ATCC 19109]
gi|384574570|gb|EIF05035.1| ATP-dependent DNA helicase RecQ [Vibrio tubiashii NCIMB 1337 = ATCC
19106]
Length = 612
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 156/395 (39%), Positives = 238/395 (60%), Gaps = 18/395 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L FG+ FRD Q + I++ ++G+D +MPTGGGKS+CYQIPALA+ G+ LVVSPL
Sbjct: 19 RILEDVFGYQSFRDGQQEVIESAVAGQDSLVIMPTGGGKSLCYQIPALAREGLTLVVSPL 78
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV LK G+A E ++ST + +Y + SG +L+L+YV+PE F+
Sbjct: 79 ISLMKDQVDQLKANGVAAECVNSTMPREELISVYNRMHSG--ALKLVYVSPERVLMRDFI 136
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L+ I L+++A+DEAHCIS WGHDFRP Y L L+ + P +P++ALTATA
Sbjct: 137 ERLENIS----LSMIAVDEAHCISQWGHDFRPEYASLGQLKQHFPHIPVMALTATADDAT 192
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
+KD+M+ L L P SF+RPN+ Y + K + + L+ +C I+YC
Sbjct: 193 RKDIMQRLQLDEPHTYLGSFDRPNIRYTLVEKH---KPVSQVVRFLEGQRGSCGIIYCGS 249
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R + ++ L G+ A+YHAGL R+ V + + Q+VVATVAFGMGI++ +V
Sbjct: 250 RKKVEMVTEKLCNNGLRAASYHAGLEADERAYVQEAFQRDDIQIVVATVAFGMGINKPNV 309
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V HF+IP+++E++YQE+GRAGRD LP+++++ Y D + +L + +
Sbjct: 310 RFVVHFDIPRNIESYYQETGRAGRDGLPAEAMMLYDPADISWLRRMLDEKDDGPQKQVEA 369
Query: 388 RERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + M + E CRR+ +L FGE
Sbjct: 370 HK---------LNAMSAFAEAQTCRRQVLLNYFGE 395
>gi|255725388|ref|XP_002547623.1| hypothetical protein CTRG_01930 [Candida tropicalis MYA-3404]
gi|240135514|gb|EER35068.1| hypothetical protein CTRG_01930 [Candida tropicalis MYA-3404]
Length = 1227
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/407 (39%), Positives = 246/407 (60%), Gaps = 20/407 (4%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG---- 79
+ + K+L F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PAL K G
Sbjct: 609 DEVYKVLDNTFKLKDFRSNQLEAVCATLQGKDVFVLMPTGGGKSLCYQLPALIKSGKTSG 668
Query: 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139
+V+SPLI+LM++QV L+ KGI +S+ G L ++Y++PE
Sbjct: 669 TTVVISPLISLMQDQVQHLQSKGIKAGMISAHGAKGDNKHTTNLFREG--FLDIVYLSPE 726
Query: 140 LTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
G K+ +++ L V IDEAHC+SSWGHDFRP Y+ L + P+VPI+A
Sbjct: 727 KANRSGHTQKIIARLYKNDQLARVVIDEAHCLSSWGHDFRPDYQGLKFFKEEFPNVPIMA 786
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKAN 256
LTATA KV++D++ +L +++P+ LK SFNR NLFYE+R K D L + +++ +
Sbjct: 787 LTATANEKVREDILHNLNMKDPIFLKQSFNRTNLFYEIRLKQRDFLKEIKD---YIMEKH 843
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
+ I+YC + +C++ SA L+ G+ + YHAG++ + R + +W +++ QV+ AT+
Sbjct: 844 PNQTGIIYCHSKQSCEQTSAKLNEYGLRTSFYHAGMSTEDRYKIQTNWQNNKIQVICATI 903
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGID+ DVR V H +P+S+E +YQE+GRAGRD S+ ++YY D R + ++
Sbjct: 904 AFGMGIDKPDVRFVIHLFLPRSLEGYYQETGRAGRDGKHSECIMYYSPKDARTLRTLI-- 961
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ + FS E + + Q+V YCE + CRR+++L+ F E
Sbjct: 962 ---QGDEQFS--EDVKEGHLEKLRQVVQYCENTIDCRRQQVLQYFNE 1003
>gi|395213964|ref|ZP_10400385.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
gi|394456500|gb|EJF10790.1| ATP-dependent DNA helicase RecQ [Pontibacter sp. BAB1700]
Length = 726
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 238/393 (60%), Gaps = 19/393 (4%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ FG+ QFR Q I +++G++ F +MPTG GKS+CYQ+PAL+ PG +V+SPLIA
Sbjct: 13 LKEVFGYNQFRGNQELIINNIINGKNTFVIMPTGAGKSLCYQLPALSLPGTAIVISPLIA 72
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM+NQV L G+ FL+ST + K+ ++ +G+ ++LLYV PE +
Sbjct: 73 LMKNQVDQLNAFGVNAHFLNSTLSKSEINKVKKETLAGE--VKLLYVAPESLTKEETVEF 130
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209
L+ + ++ VAIDEAHCIS WGHDFRP YR++ + + + ++PI+ALTATA PKVQ
Sbjct: 131 LRASN----ISFVAIDEAHCISEWGHDFRPEYRRIRGIIDQIGNLPIIALTATATPKVQL 186
Query: 210 DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269
D+ +L + V KSSFNR NL+YEVR K + + +K + ++YCL R
Sbjct: 187 DIQRNLQMDEASVFKSSFNRTNLYYEVRPKH---NTKKQVIQYVKKHKGKSGVIYCLSRK 243
Query: 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329
+E++ L I YHAGL+ R + D +++ V+VAT+AFGMGID+ DVR
Sbjct: 244 KVEEIAELLRVNDIKALPYHAGLDSNIRMANQDAFLNEEADVIVATIAFGMGIDKPDVRF 303
Query: 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRE 389
V H++ PKS+E +YQE+GRAGRD L +++Y DD ++E K ++ E
Sbjct: 304 VIHYDTPKSIEGYYQETGRAGRDGLEGNCIMFYSYDDIIKLE--------KFNKDKPVTE 355
Query: 390 RSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
R + K + +M Y + + CRRK++L FGE
Sbjct: 356 RDNSKLL--LQEMAAYADSAVCRRKQLLHYFGE 386
>gi|433323990|ref|ZP_20401319.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|433327299|ref|ZP_20403746.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432344992|gb|ELL39536.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
gi|432347541|gb|ELL42000.1| ATP-dependent DNA helicase RecQ [Escherichia coli J96]
Length = 609
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|319942147|ref|ZP_08016465.1| ATP-dependent DNA helicase RecQ [Sutterella wadsworthensis 3_1_45B]
gi|319804357|gb|EFW01241.1| ATP-dependent DNA helicase RecQ [Sutterella wadsworthensis 3_1_45B]
Length = 609
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 168/406 (41%), Positives = 245/406 (60%), Gaps = 23/406 (5%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
KEAL ++ FG+ FR Q + ++AV+ G D LMPTGGGKS+CYQIPAL + G+ +
Sbjct: 8 KEALKQV----FGYDAFRGFQEEVVRAVVRGEDVLVLMPTGGGKSLCYQIPALLRDGVAV 63
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L+E G++ +L+ST T + + L G+ L LLYV PE
Sbjct: 64 VVSPLIALMQDQVDALEELGVSAAYLNSTLTPEAAADVRRRLRCGE--LDLLYVAPERL- 120
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
MS ++ + S ++L AIDEAHC+S WGHDFRP Y LS LR + P+VP +ALTAT
Sbjct: 121 ---LMSSMQALLSEVKISLFAIDEAHCVSIWGHDFRPEYGALSILREHFPNVPRIALTAT 177
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCA 261
A PK +++++ L L +P +SF+RPN+FY + K + + L +K + C
Sbjct: 178 ADPKTREEIVNKL-LVHPKEFVASFDRPNIFYRIVDKK---NVRSQLAQFIKTEHPGECG 233
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
+VYC+ R TC+ + YL + GI YHAGL+++ R+ L + V+VAT+AFGMG
Sbjct: 234 VVYCIARQTCESICEYLCSKGIHALFYHAGLSNEERAERLAAFQREDDIVMVATIAFGMG 293
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ +VR V H ++PKS+E ++QE+GRAGRD LPS + + YG+ D + + K+ + +
Sbjct: 294 IDKPNVRFVAHADMPKSIEGYFQETGRAGRDGLPSDAWMAYGLADVVNQRYFIDKSGADD 353
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
E+ M+ E CRR ++L FGE+ C
Sbjct: 354 LHKQIETEK--------LDAMLGLAEACTCRRVQLLAYFGEKSTPC 391
>gi|293407448|ref|ZP_06651368.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1412]
gi|298383188|ref|ZP_06992782.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1302]
gi|300900624|ref|ZP_07118784.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 198-1]
gi|419937477|ref|ZP_14454373.1| ATP-dependent DNA helicase RecQ [Escherichia coli 576-1]
gi|422335405|ref|ZP_16416404.1| ATP-dependent DNA helicase recQ [Escherichia coli 4_1_47FAA]
gi|432355858|ref|ZP_19599118.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE2]
gi|432404223|ref|ZP_19646965.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE26]
gi|432428490|ref|ZP_19670969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE181]
gi|432463191|ref|ZP_19705321.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE204]
gi|432478186|ref|ZP_19720170.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE208]
gi|432491658|ref|ZP_19733516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE213]
gi|432520039|ref|ZP_19757217.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE228]
gi|432540207|ref|ZP_19777097.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE235]
gi|432633771|ref|ZP_19869687.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE80]
gi|432643423|ref|ZP_19879243.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE83]
gi|432668418|ref|ZP_19903986.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE116]
gi|432772598|ref|ZP_20006908.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE54]
gi|432841683|ref|ZP_20075137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE140]
gi|432889621|ref|ZP_20102893.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE158]
gi|432915492|ref|ZP_20120747.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE190]
gi|433021080|ref|ZP_20209155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE105]
gi|433055454|ref|ZP_20242605.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE122]
gi|433070190|ref|ZP_20256950.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE128]
gi|433160980|ref|ZP_20345793.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE177]
gi|433180699|ref|ZP_20365069.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE82]
gi|433205578|ref|ZP_20389319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE95]
gi|291425559|gb|EFE98597.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1412]
gi|298276424|gb|EFI17943.1| ATP-dependent DNA helicase RecQ [Escherichia coli FVEC1302]
gi|300355875|gb|EFJ71745.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 198-1]
gi|373243555|gb|EHP63057.1| ATP-dependent DNA helicase recQ [Escherichia coli 4_1_47FAA]
gi|388397659|gb|EIL58631.1| ATP-dependent DNA helicase RecQ [Escherichia coli 576-1]
gi|430872071|gb|ELB95690.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE2]
gi|430922543|gb|ELC43295.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE26]
gi|430950316|gb|ELC69702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE181]
gi|430985141|gb|ELD01748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE204]
gi|431001695|gb|ELD17271.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE208]
gi|431017014|gb|ELD30531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE213]
gi|431047458|gb|ELD57458.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE228]
gi|431066698|gb|ELD75322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE235]
gi|431166942|gb|ELE67245.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE80]
gi|431177006|gb|ELE76946.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE83]
gi|431197038|gb|ELE95905.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE116]
gi|431323251|gb|ELG10799.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE54]
gi|431384955|gb|ELG68945.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE140]
gi|431413215|gb|ELG96009.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE158]
gi|431435094|gb|ELH16707.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE190]
gi|431526412|gb|ELI03166.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE105]
gi|431565194|gb|ELI38332.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE122]
gi|431578296|gb|ELI50904.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE128]
gi|431673078|gb|ELJ39309.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE177]
gi|431697564|gb|ELJ62670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE82]
gi|431715540|gb|ELJ79688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE95]
Length = 611
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|425307629|ref|ZP_18697292.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
gi|408224965|gb|EKI48662.1| ATP-dependent DNA helicase RecQ [Escherichia coli N1]
Length = 609
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|416333516|ref|ZP_11670743.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
gi|320197630|gb|EFW72242.1| ATP-dependent DNA helicase RecQ [Escherichia coli WV_060327]
Length = 609
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|432332157|ref|YP_007250300.1| ATP-dependent DNA helicase RecQ [Methanoregula formicicum SMSP]
gi|432138866|gb|AGB03793.1| ATP-dependent DNA helicase RecQ [Methanoregula formicicum SMSP]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/394 (42%), Positives = 236/394 (59%), Gaps = 17/394 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LLR ++G F Q + I +VLSG D ++ TGGGKS+CYQ+PAL G+ LV+SPLI
Sbjct: 7 LLRQYWGSPSFLPLQEEIIGSVLSGNDTLAILATGGGKSLCYQLPALYLGGLTLVISPLI 66
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM++QV L+ +GI +S+ + + +I + +LRLL+++PE PGF+S
Sbjct: 67 SLMKDQVDDLQARGIPAAAWNSSLDQKERARITGGISDA--NLRLLFISPEKCLQPGFLS 124
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
L R L+AIDEAHCIS WGH+FRP YR+L+ ++ P +P++ALTATA P V+
Sbjct: 125 SLATARVR----LIAIDEAHCISEWGHNFRPEYRQLARIKEVFPGIPLIALTATAIPGVR 180
Query: 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER 268
+D+ + L ++ SFNR NL Y V K + L L + + IVYCL R
Sbjct: 181 RDIRQQLKMECAREFTGSFNRKNLRYRVVPKK---NPLVFLADYLGQHREESGIVYCLSR 237
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
+ + ++ L G S AAYHAGL+ + R V + +I R QVV ATVAFGMGID+ DVR
Sbjct: 238 SETETVAGDLQQRGFSAAAYHAGLSRQERERVQESFIRDRVQVVCATVAFGMGIDKPDVR 297
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H+++PK++E +YQE+GRAGRD S+ +L Y D R+ +L + S
Sbjct: 298 FVIHYDLPKTLEGYYQETGRAGRDGQYSECVLLYSRGDYARIRSLLEQGDSGGQH----- 352
Query: 389 ERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K S++ M +YCE +GCRRK +L FGE
Sbjct: 353 ---LKVSLAKLRDMQEYCETTGCRRKFLLTYFGE 383
>gi|374702008|ref|ZP_09708878.1| ATP-dependent DNA helicase RecQ [Pseudomonas sp. S9]
Length = 711
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/400 (41%), Positives = 239/400 (59%), Gaps = 17/400 (4%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
++A ++L+ FG+ FR +Q IQ V SG D LMPTGGGKS+C+Q+PAL + G+ +
Sbjct: 2 QDAAQRILKDIFGYDSFRGRQEAIIQRVASGGDALVLMPTGGGKSLCFQVPALMRDGLAV 61
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLIALM++QV L E G+A L+ST + + I + + G+ +++LY+ PE
Sbjct: 62 VVSPLIALMDDQVATLDELGVAAVALNSTLSSDAQRDIADRIRRGE--VKMLYLAPERLV 119
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
P ++ L+++ + L AIDEAHC+S WGHDFRP Y +L L Y P VP +ALTAT
Sbjct: 120 QPRMLAFLQRLE----IALFAIDEAHCVSQWGHDFRPEYLQLGQLAEYFPQVPRIALTAT 175
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
A + +++++ L LQ+ SSF+RPN+FY + K+ L L A I
Sbjct: 176 ADMRTREEIINRLHLQDAERFLSSFDRPNIFYRIVPKE---QPRKQLLGFLAARKGDAGI 232
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VYCL R DE++A+LSA G YHAGL + R+ +++ ++VAT+AFGMGI
Sbjct: 233 VYCLSRKKVDEVAAFLSAQGFPALPYHAGLPSELRAYHQKRFLNEEGLIMVATIAFGMGI 292
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ +VR V H ++PKS+EA+YQE+GRAGRD LP+ + + YG+ D +L K NS
Sbjct: 293 DKPNVRFVAHLDLPKSLEAYYQETGRAGRDGLPADAWMAYGLQD-----VLLLKQMLNNS 347
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER + M+ CE + CRR+ +L F E
Sbjct: 348 DG---DERHKRIEQHKLDAMLALCEETRCRRQVLLGYFDE 384
>gi|217969471|ref|YP_002354705.1| ATP-dependent DNA helicase RecQ [Thauera sp. MZ1T]
gi|217506798|gb|ACK53809.1| ATP-dependent DNA helicase RecQ [Thauera sp. MZ1T]
Length = 657
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 170/431 (39%), Positives = 248/431 (57%), Gaps = 22/431 (5%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
+ P T+ Q++ PL +A ++L FG+ FR +Q + ++ V G D LM
Sbjct: 35 LPGEPRTPPPTTFDQRDVPL--GDAAHRVLEHVFGYPAFRGEQGEIVEHVAGGGDALVLM 92
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPAL + G +VVSPLIALM++QV L E G+ FL+S+ M+ +
Sbjct: 93 PTGGGKSLCYQIPALLRHGTAIVVSPLIALMQDQVSALVEAGVRAAFLNSSLDMERARAV 152
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
L G+ L LLYV PE TP F+ +L + G L+L AIDEAHC+S WGHDFRP
Sbjct: 153 ERALWDGE--LELLYVAPERLMTPRFLDQLDHLRDTGRLSLFAIDEAHCVSQWGHDFRPE 210
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
Y +LS L P +P +ALTATA + ++++ E L LQ SSF+RPN+ Y + K
Sbjct: 211 YLQLSILPERYPAIPRIALTATADRQTREEIAERLNLQAARRFVSSFDRPNIRYTIVEK- 269
Query: 241 LLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
+D L ++ IVYCL R +E +A+L G++ YHAG+ + R+
Sbjct: 270 --NDPRRQLLDFIREECPGQAGIVYCLSRRKVEETAAWLQEQGLAALPYHAGMTQEIRAE 327
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
++ ++VAT+AFGMGID+ DVR V H ++P+S+E +YQE+GRAGRD LP+++
Sbjct: 328 HQSRFLREDGLIMVATIAFGMGIDKPDVRFVAHLDLPRSIEGYYQETGRAGRDGLPAQAW 387
Query: 360 LYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKI 416
+ +G D +RRM ++S+ ++ F R+ +V E + CRR+ +
Sbjct: 388 MAWGAQDVVQQRRM-----IDESEANEEFKRLARNR------LDVLVGLVEATDCRRQHL 436
Query: 417 LESFGEQVLGC 427
L FGEQ C
Sbjct: 437 LAYFGEQSTPC 447
>gi|7428315|pir||BVECRQ DNA helicase recQ - Escherichia coli (strain K-12)
Length = 610
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|418259306|ref|ZP_12882257.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
gi|397894450|gb|EJL10892.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 6603-63]
Length = 609
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLAVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|432545657|ref|ZP_19782479.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|432551136|ref|ZP_19787884.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|432624192|ref|ZP_19860204.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|432817612|ref|ZP_20051362.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
gi|431070550|gb|ELD78853.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE236]
gi|431075989|gb|ELD83505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE237]
gi|431155723|gb|ELE56469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE76]
gi|431360028|gb|ELG46649.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE115]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|301025732|ref|ZP_07189247.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|419918818|ref|ZP_14436995.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
gi|300395855|gb|EFJ79393.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 69-1]
gi|388389458|gb|EIL50989.1| ATP-dependent DNA helicase RecQ [Escherichia coli KD2]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|218707455|ref|YP_002414974.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMN026]
gi|417588964|ref|ZP_12239725.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_C165-02]
gi|218434552|emb|CAR15481.1| ATP-dependent DNA helicase [Escherichia coli UMN026]
gi|345331100|gb|EGW63561.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_C165-02]
Length = 609
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|384086932|ref|ZP_09998107.1| ATP-dependent DNA helicase RecQ [Acidithiobacillus thiooxidans ATCC
19377]
Length = 602
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/397 (40%), Positives = 240/397 (60%), Gaps = 17/397 (4%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86
+++LR FG+ QFR Q + I ++SG+D LMPTGGGKS+CYQIPA+A+PG +V+SP
Sbjct: 8 LEILRHTFGYEQFRAPQEEVIATLMSGQDALVLMPTGGGKSLCYQIPAIARPGAGVVISP 67
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
LIALME+QV L++ G+A L+S+ + + E L SG+ L LLY+ PE
Sbjct: 68 LIALMEDQVNALRQAGVAAAALNSSIQPREIRETEEALRSGQ--LDLLYIAPERLLQDRT 125
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
+ L++ +NL AIDEAHC+S WGHDFRP Y +L L P +P +ALTATA PK
Sbjct: 126 LRLLQQCQ----VNLFAIDEAHCVSQWGHDFRPEYLQLKVLHERFPAIPRIALTATADPK 181
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYC 265
+ +++E L LQ + SF+RPN+ Y + A L ++ D IVYC
Sbjct: 182 TRLEIIERLGLQRARIFTRSFDRPNIRYHIHSSS--QGARNALLRFIRDRHDGEAGIVYC 239
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
L R +E++A+L A G+ YHAGL+ R + ++VAT+AFGMGID+
Sbjct: 240 LSRKRVEEIAAWLQAEGLDALPYHAGLSADERRRHQQRFQRDEGVIIVATIAFGMGIDKP 299
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V H N+PKS+EA+YQE+GRAGRD LP+++ ++YG+ D ++ ++ ++++ +
Sbjct: 300 NVRFVAHLNLPKSIEAYYQETGRAGRDGLPAEAWMHYGLQDVVQLRQMIQQSEADQQR-- 357
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
++ +K M+ CE CRR+ +L FGE
Sbjct: 358 --KQMEGQK----LDAMLALCETVACRRQTLLSYFGE 388
>gi|417692248|ref|ZP_12341449.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
gi|332084419|gb|EGI89615.1| ATP-dependent DNA helicase RecQ [Shigella boydii 5216-82]
Length = 609
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|432855825|ref|ZP_20083516.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
gi|431397110|gb|ELG80571.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE144]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLTHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|325263257|ref|ZP_08129992.1| ATP-dependent DNA helicase RecQ [Clostridium sp. D5]
gi|324031650|gb|EGB92930.1| ATP-dependent DNA helicase RecQ [Clostridium sp. D5]
Length = 708
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/396 (40%), Positives = 240/396 (60%), Gaps = 10/396 (2%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG+ +FRD Q + +++ L GRD +MPTG GKS+C+Q+PAL GI L++SPL
Sbjct: 5 KVLKEVFGYDEFRDGQEELVESTLQGRDVLGIMPTGAGKSICFQVPALLFEGISLIISPL 64
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L + G+ +++S+ T K ++ +G+ +++YV PE T F+
Sbjct: 65 ISLMKDQVTALNQLGVHAAYINSSLTEGQYRKAMDNARNGQ--YKIIYVAPERLMTESFL 122
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAPK 206
S + + +++VA+DEAHCIS WG DFRPSY K+ N LP P I+A TATA
Sbjct: 123 SLVSNVD----ISMVAVDEAHCISQWGQDFRPSYLKIVEFINMLPKRPVIVAYTATATKV 178
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266
V++D+ L LQ+P V+ + ++R NL++ V+ + A+L + ++ NGD I+YC
Sbjct: 179 VKEDISCILGLQDPTVVVTGYDRKNLYFAVKKPK---NKMAELLAYMEKNGDKSGIIYCN 235
Query: 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326
R +E+ L G A YHAGL+D AR +D+I K ++VAT AFGMGID+ +
Sbjct: 236 TRKNVEEVHEALLKEGYLTAKYHAGLSDSARKQNQEDFIYDIKPIMVATNAFGMGIDKSN 295
Query: 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFS 386
VR V H+N+PK +E++YQE+GRAGRD PS+ +L Y D + EF++SK +
Sbjct: 296 VRFVIHYNMPKDIESYYQEAGRAGRDGEPSECILLYSGQDVKINEFLISKQTENEELDYE 355
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
RE ++ +M YC + C R IL FGE
Sbjct: 356 ERELIRERDNERLRKMTFYCVTNECLRDYILRYFGE 391
>gi|117922195|ref|YP_871387.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
gi|117614527|gb|ABK49981.1| ATP-dependent DNA helicase RecQ [Shewanella sp. ANA-3]
Length = 607
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 167/409 (40%), Positives = 243/409 (59%), Gaps = 25/409 (6%)
Query: 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76
+ PL ++ A V FG+ FRD Q + I+ V SG DC +MPTGGGKS+CYQ+PAL
Sbjct: 10 DDPLSQRLAQV------FGYRDFRDGQREVIERVCSGEDCLVIMPTGGGKSLCYQLPALL 63
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
PGI +VVSPLI+LM++QV L + G+ +L+S+Q + ++ L G+ L+LLYV
Sbjct: 64 MPGITIVVSPLISLMKDQVDSLLQTGVNAAYLNSSQPREQSVEVLRQLHRGE--LKLLYV 121
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
+PE T F+ +++ + L++ AIDEAHCIS WGHDFRP Y L L+ P VP+
Sbjct: 122 SPERLLTGDFIERMRSLP----LSMFAIDEAHCISQWGHDFRPEYAALGQLKQLFPHVPM 177
Query: 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256
+ALTATA ++++ E L + NP L SSF+RPN+ Y V K L+ A +L+ N
Sbjct: 178 MALTATADQATRQNICERLGI-NPFRLLSSFDRPNIRYTVAEK--LNAANQLRQFLLQQN 234
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
G + IVYC R DE++ L G AYHAG+ + R V D ++ + +VVATV
Sbjct: 235 G-SSGIVYCSSRRRVDEVAERLILQGFHAKAYHAGMTPQERGEVQDSFLKDQIDIVVATV 293
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376
AFGMGI++ +VR V H++IPKS+EA+YQE+GRAGRD L +++ + + D R+ ++ +
Sbjct: 294 AFGMGINKSNVRFVVHYDIPKSIEAYYQETGRAGRDGLEAEAFMLFDPADIGRVRHLIEQ 353
Query: 377 NQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425
++ Q + M + E CRR+ +L F E L
Sbjct: 354 SEPGPQQQV---------DFHKLNTMAAFAEAQTCRRQVLLHYFDESAL 393
>gi|15804414|ref|NP_290454.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EDL933]
gi|15834006|ref|NP_312779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
Sakai]
gi|26250563|ref|NP_756603.1| ATP-dependent DNA helicase RecQ [Escherichia coli CFT073]
gi|91213348|ref|YP_543334.1| ATP-dependent DNA helicase RecQ [Escherichia coli UTI89]
gi|117626081|ref|YP_859404.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O1]
gi|168750361|ref|ZP_02775383.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|168753724|ref|ZP_02778731.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|168763952|ref|ZP_02788959.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|168768108|ref|ZP_02793115.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|168775622|ref|ZP_02800629.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|168780726|ref|ZP_02805733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|168786665|ref|ZP_02811672.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|168801109|ref|ZP_02826116.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|193065720|ref|ZP_03046785.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|193068067|ref|ZP_03049032.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194434028|ref|ZP_03066298.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|195938114|ref|ZP_03083496.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4024]
gi|208806062|ref|ZP_03248399.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208812810|ref|ZP_03254139.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208821321|ref|ZP_03261641.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209400089|ref|YP_002273341.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|217325284|ref|ZP_03441368.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|227888592|ref|ZP_04006397.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|237702832|ref|ZP_04533313.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|261225598|ref|ZP_05939879.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255644|ref|ZP_05948177.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
FRIK966]
gi|291285239|ref|YP_003502057.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|300818704|ref|ZP_07098911.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300939956|ref|ZP_07154585.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300950413|ref|ZP_07164336.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300955172|ref|ZP_07167569.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300985659|ref|ZP_07177546.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|301029039|ref|ZP_07192192.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|301047295|ref|ZP_07194381.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|301328411|ref|ZP_07221497.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301646111|ref|ZP_07246011.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|306815139|ref|ZP_07449292.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|331644555|ref|ZP_08345675.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331655508|ref|ZP_08356501.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331665474|ref|ZP_08366373.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331675289|ref|ZP_08376040.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332282668|ref|ZP_08395081.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|386597646|ref|YP_006094046.1| RecQ familyATP-dependent DNA helicase [Escherichia coli DH1]
gi|386606401|ref|YP_006112701.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|386626719|ref|YP_006146447.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|386631763|ref|YP_006151483.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|386636683|ref|YP_006156402.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|387619114|ref|YP_006122136.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|387623474|ref|YP_006131102.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|387885050|ref|YP_006315352.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|415875441|ref|ZP_11542196.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|416261809|ref|ZP_11640557.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|416284789|ref|ZP_11647410.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|416307593|ref|ZP_11654634.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|416319727|ref|ZP_11662279.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|416326935|ref|ZP_11667010.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|416778771|ref|ZP_11876102.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|416790129|ref|ZP_11880995.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|416801903|ref|ZP_11885883.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|416812763|ref|ZP_11890805.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97]
gi|416823216|ref|ZP_11895422.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|416833537|ref|ZP_11900417.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|417087782|ref|ZP_11954640.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|417125722|ref|ZP_11973683.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|417135031|ref|ZP_11979816.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|417156682|ref|ZP_11994306.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|417169247|ref|ZP_12001502.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|417249485|ref|ZP_12041269.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|417265179|ref|ZP_12052558.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|417273258|ref|ZP_12060605.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|417279255|ref|ZP_12066565.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|417293640|ref|ZP_12080919.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|417296259|ref|ZP_12083506.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|417868124|ref|ZP_12513155.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|418040283|ref|ZP_12678529.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|418960294|ref|ZP_13512185.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|419804829|ref|ZP_14329980.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|419926606|ref|ZP_14444357.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|419943310|ref|ZP_14459870.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|421777493|ref|ZP_16214088.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|422361452|ref|ZP_16442074.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|422364103|ref|ZP_16444631.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|422752068|ref|ZP_16805973.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|422757541|ref|ZP_16811359.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|422764373|ref|ZP_16818123.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|422773902|ref|ZP_16827583.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|422818975|ref|ZP_16867187.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|422836240|ref|ZP_16884288.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|422842112|ref|ZP_16890078.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|422963299|ref|ZP_16973143.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|422990089|ref|ZP_16980861.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|422996987|ref|ZP_16987749.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|423002081|ref|ZP_16992833.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|423005737|ref|ZP_16996482.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|423012298|ref|ZP_17003030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|423021529|ref|ZP_17012234.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|423026687|ref|ZP_17017381.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|423032514|ref|ZP_17023200.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|423035353|ref|ZP_17026030.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423040509|ref|ZP_17031178.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423047194|ref|ZP_17037853.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423055733|ref|ZP_17044539.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423057736|ref|ZP_17046535.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703345|ref|ZP_17677777.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|427807018|ref|ZP_18974085.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|427811606|ref|ZP_18978671.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429721569|ref|ZP_19256483.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429773463|ref|ZP_19305477.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429778828|ref|ZP_19310793.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429782663|ref|ZP_19314587.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429788056|ref|ZP_19319942.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429794495|ref|ZP_19326335.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429800455|ref|ZP_19332243.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429804067|ref|ZP_19335823.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429808715|ref|ZP_19340430.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429814414|ref|ZP_19346084.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429819617|ref|ZP_19351246.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429905937|ref|ZP_19371912.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910070|ref|ZP_19376031.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429915970|ref|ZP_19381915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921018|ref|ZP_19386944.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429926826|ref|ZP_19392736.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429930757|ref|ZP_19396656.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429937299|ref|ZP_19403184.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429942978|ref|ZP_19408849.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429945657|ref|ZP_19411516.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429953220|ref|ZP_19419064.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429956566|ref|ZP_19422396.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432360276|ref|ZP_19603487.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|432365076|ref|ZP_19608229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|432367297|ref|ZP_19610409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|432383719|ref|ZP_19626643.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|432389627|ref|ZP_19632505.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|432394491|ref|ZP_19637307.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|432414086|ref|ZP_19656738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|432419345|ref|ZP_19661934.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|432434048|ref|ZP_19676469.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|432438779|ref|ZP_19681155.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|432443352|ref|ZP_19685684.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|432448496|ref|ZP_19690791.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|432452089|ref|ZP_19694343.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|432458964|ref|ZP_19701137.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|432483235|ref|ZP_19725182.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|432487578|ref|ZP_19729484.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|432493074|ref|ZP_19734902.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|432506714|ref|ZP_19748431.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|432516211|ref|ZP_19753425.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|432526295|ref|ZP_19763406.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|432528681|ref|ZP_19765751.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|432571096|ref|ZP_19807600.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|432576067|ref|ZP_19812534.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|432578095|ref|ZP_19814540.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|432590276|ref|ZP_19826626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|432595035|ref|ZP_19831345.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|432600079|ref|ZP_19836347.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|432605259|ref|ZP_19841468.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|432613825|ref|ZP_19849981.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|432629445|ref|ZP_19865409.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|432634727|ref|ZP_19870624.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|432648493|ref|ZP_19884277.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|432653476|ref|ZP_19889212.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|432658058|ref|ZP_19893754.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|432663070|ref|ZP_19898697.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|432672915|ref|ZP_19908432.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|432677001|ref|ZP_19912440.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|432687652|ref|ZP_19922939.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|432689149|ref|ZP_19924414.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|432701337|ref|ZP_19936480.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|432706554|ref|ZP_19941647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|432739319|ref|ZP_19974046.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|432747796|ref|ZP_19982457.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|432752279|ref|ZP_19986855.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|432756779|ref|ZP_19991322.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|432768201|ref|ZP_20002590.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|432780984|ref|ZP_20015199.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|432785808|ref|ZP_20019983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|432789848|ref|ZP_20023974.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|432795081|ref|ZP_20029152.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|432796592|ref|ZP_20030625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|432808068|ref|ZP_20041980.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|432818612|ref|ZP_20052333.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|432824744|ref|ZP_20058407.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|432847043|ref|ZP_20079554.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|432866699|ref|ZP_20089036.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|432878187|ref|ZP_20095636.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|432907645|ref|ZP_20116028.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|432931567|ref|ZP_20131599.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|432940641|ref|ZP_20138542.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|432943514|ref|ZP_20140349.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|432951080|ref|ZP_20144823.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|432964632|ref|ZP_20153702.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|432974095|ref|ZP_20162937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|432976046|ref|ZP_20164877.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|432987668|ref|ZP_20176378.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|432997605|ref|ZP_20186184.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|433002200|ref|ZP_20190717.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|433002724|ref|ZP_20191232.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|433010024|ref|ZP_20198434.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|433016140|ref|ZP_20204466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|433025731|ref|ZP_20213696.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|433035751|ref|ZP_20223437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|433040839|ref|ZP_20228423.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|433045355|ref|ZP_20232827.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|433050297|ref|ZP_20237614.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|433060346|ref|ZP_20247376.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|433065296|ref|ZP_20252196.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|433084749|ref|ZP_20271193.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|433089549|ref|ZP_20275906.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|433103420|ref|ZP_20289488.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|433117753|ref|ZP_20303531.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|433127456|ref|ZP_20312995.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|433132402|ref|ZP_20317821.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|433137074|ref|ZP_20322396.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|433141529|ref|ZP_20326765.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|433146459|ref|ZP_20331588.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|433151482|ref|ZP_20336476.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|433156014|ref|ZP_20340937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|433165840|ref|ZP_20350564.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|433170836|ref|ZP_20355450.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|433175714|ref|ZP_20360216.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|433190628|ref|ZP_20374713.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|433195880|ref|ZP_20379845.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|433200586|ref|ZP_20384466.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|433209973|ref|ZP_20393634.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|433214852|ref|ZP_20398424.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|442591349|ref|ZP_21009834.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|442603448|ref|ZP_21018338.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
gi|452967363|ref|ZP_21965590.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4009]
gi|12518696|gb|AAG59018.1|AE005613_11 ATP-dependent DNA helicase [Escherichia coli O157:H7 str. EDL933]
gi|26110993|gb|AAN83177.1|AE016769_292 ATP-dependent DNA helicase recQ [Escherichia coli CFT073]
gi|13364228|dbj|BAB38175.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. Sakai]
gi|91074922|gb|ABE09803.1| ATP-dependent DNA helicase [Escherichia coli UTI89]
gi|115515205|gb|ABJ03280.1| ATP-dependent DNA helicase [Escherichia coli APEC O1]
gi|187768838|gb|EDU32682.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4196]
gi|188015421|gb|EDU53543.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4113]
gi|189001596|gb|EDU70582.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4076]
gi|189358975|gb|EDU77394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4401]
gi|189362723|gb|EDU81142.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4486]
gi|189365963|gb|EDU84379.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4501]
gi|189373237|gb|EDU91653.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC869]
gi|189376685|gb|EDU95101.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC508]
gi|192926687|gb|EDV81316.1| ATP-dependent DNA helicase RecQ [Escherichia coli E22]
gi|192958687|gb|EDV89125.1| ATP-dependent DNA helicase RecQ [Escherichia coli E110019]
gi|194417686|gb|EDX33785.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 1012]
gi|208725863|gb|EDZ75464.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4206]
gi|208734087|gb|EDZ82774.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4045]
gi|208741444|gb|EDZ89126.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4042]
gi|209161489|gb|ACI38922.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC4115]
gi|209753168|gb|ACI74891.1| threonine efflux protein [Escherichia coli]
gi|209753170|gb|ACI74892.1| threonine efflux protein [Escherichia coli]
gi|209753172|gb|ACI74893.1| threonine efflux protein [Escherichia coli]
gi|209753174|gb|ACI74894.1| threonine efflux protein [Escherichia coli]
gi|209753176|gb|ACI74895.1| threonine efflux protein [Escherichia coli]
gi|217321505|gb|EEC29929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14588]
gi|226903003|gb|EEH89262.1| ATP-dependent DNA helicase recQ [Escherichia sp. 3_2_53FAA]
gi|227834431|gb|EEJ44897.1| ATP-dependent DNA helicase RecQ [Escherichia coli 83972]
gi|260451335|gb|ACX41757.1| ATP-dependent DNA helicase, RecQ family [Escherichia coli DH1]
gi|290765112|gb|ADD59073.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
CB9615]
gi|299878002|gb|EFI86213.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 196-1]
gi|300300814|gb|EFJ57199.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 185-1]
gi|300317889|gb|EFJ67673.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 175-1]
gi|300408043|gb|EFJ91581.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 45-1]
gi|300450259|gb|EFK13879.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 116-1]
gi|300455218|gb|EFK18711.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 21-1]
gi|300528670|gb|EFK49732.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 107-1]
gi|300845161|gb|EFK72921.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 78-1]
gi|301075637|gb|EFK90443.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 146-1]
gi|305851508|gb|EFM51962.1| ATP-dependent DNA helicase RecQ [Escherichia coli NC101]
gi|307628885|gb|ADN73189.1| ATP-dependent DNA helicase RecQ [Escherichia coli UM146]
gi|312948375|gb|ADR29202.1| ATP-dependent DNA helicase RecQ [Escherichia coli O83:H1 str. NRG
857C]
gi|315138398|dbj|BAJ45557.1| ATP-dependent DNA helicase RecQ [Escherichia coli DH1]
gi|315284755|gb|EFU44200.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 110-3]
gi|315293200|gb|EFU52552.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 153-1]
gi|320176754|gb|EFW51788.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae CDC 74-1112]
gi|320179831|gb|EFW54778.1| ATP-dependent DNA helicase RecQ [Shigella boydii ATCC 9905]
gi|320191083|gb|EFW65733.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
EC1212]
gi|320639307|gb|EFX08929.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
G5101]
gi|320644692|gb|EFX13742.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str.
493-89]
gi|320650017|gb|EFX18520.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H- str. H
2687]
gi|320655364|gb|EFX23306.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660989|gb|EFX28432.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str. USDA
5905]
gi|320666113|gb|EFX33127.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
LSU-61]
gi|323938957|gb|EGB35176.1| ATP-dependent DNA helicase RecQ [Escherichia coli E482]
gi|323949294|gb|EGB45184.1| ATP-dependent DNA helicase RecQ [Escherichia coli H252]
gi|323954029|gb|EGB49827.1| ATP-dependent DNA helicase RecQ [Escherichia coli H263]
gi|324115715|gb|EGC09650.1| ATP-dependent DNA helicase RecQ [Escherichia coli E1167]
gi|326344280|gb|EGD68040.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1125]
gi|326347892|gb|EGD71606.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
1044]
gi|331036227|gb|EGI08462.1| ATP-dependent DNA helicase RecQ [Escherichia coli H736]
gi|331046829|gb|EGI18913.1| ATP-dependent DNA helicase RecQ [Escherichia coli M718]
gi|331057372|gb|EGI29361.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA143]
gi|331067575|gb|EGI38979.1| ATP-dependent DNA helicase RecQ [Escherichia coli TA280]
gi|332105020|gb|EGJ08366.1| ATP-dependent DNA helicase recQ [Shigella sp. D9]
gi|341921413|gb|EGT71013.1| hypothetical protein C22711_5047 [Escherichia coli O104:H4 str.
C227-11]
gi|342929411|gb|EGU98133.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 79-10]
gi|349740455|gb|AEQ15161.1| ATP-dependent DNA helicase [Escherichia coli O7:K1 str. CE10]
gi|354857604|gb|EHF18058.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C236-11]
gi|354861156|gb|EHF21596.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
C227-11]
gi|354862964|gb|EHF23400.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
04-8351]
gi|354870560|gb|EHF30963.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
09-7901]
gi|354876413|gb|EHF36774.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-3677]
gi|354885260|gb|EHF45564.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4404]
gi|354888660|gb|EHF48915.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4522]
gi|354892140|gb|EHF52353.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4623]
gi|354904405|gb|EHF64498.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354907666|gb|EHF67724.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354910042|gb|EHF70071.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354912556|gb|EHF72556.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C4]
gi|354920351|gb|EHF80286.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-4632 C5]
gi|355349511|gb|EHF98716.1| ATP-dependent DNA helicase RecQ [Escherichia coli cloneA_i1]
gi|355422662|gb|AER86859.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i2']
gi|355427582|gb|AER91778.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. 'clone D
i14']
gi|371591795|gb|EHN80734.1| ATP-dependent DNA helicase recQ [Escherichia coli H494]
gi|371602176|gb|EHN90887.1| ATP-dependent DNA helicase recQ [Escherichia coli H397]
gi|371609589|gb|EHN98126.1| ATP-dependent DNA helicase recQ [Escherichia coli E101]
gi|383476777|gb|EID68710.1| ATP-dependent DNA helicase RecQ [Escherichia coli W26]
gi|384376901|gb|EIE34801.1| ATP-dependent DNA helicase RecQ [Escherichia coli J53]
gi|384472213|gb|EIE56273.1| ATP-dependent DNA helicase RecQ [Escherichia coli AI27]
gi|385537533|gb|EIF84404.1| ATP-dependent DNA helicase recQ [Escherichia coli M919]
gi|385708484|gb|EIG45496.1| ATP-dependent DNA helicase recQ [Escherichia coli H730]
gi|386145721|gb|EIG92178.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0246]
gi|386152885|gb|EIH04174.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.0588]
gi|386165432|gb|EIH31952.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0497]
gi|386170387|gb|EIH42447.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0741]
gi|386219806|gb|EII36270.1| ATP-dependent DNA helicase RecQ [Escherichia coli 4.0967]
gi|386221361|gb|EII43805.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.3916]
gi|386234435|gb|EII66413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 2.4168]
gi|386238032|gb|EII74972.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.2303]
gi|386251828|gb|EIJ01520.1| ATP-dependent DNA helicase RecQ [Escherichia coli B41]
gi|386259703|gb|EIJ15177.1| ATP-dependent DNA helicase RecQ [Escherichia coli 900105 (10e)]
gi|386798508|gb|AFJ31542.1| ATP-dependent DNA helicase RecQ [Escherichia coli Xuzhou21]
gi|388409130|gb|EIL69452.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-1]
gi|388421322|gb|EIL80939.1| ATP-dependent DNA helicase RecQ [Escherichia coli HM605]
gi|408457407|gb|EKJ81203.1| ATP-dependent DNA helicase RecQ [Escherichia coli AD30]
gi|412965200|emb|CCK49130.1| ATP-dependent DNA helicase [Escherichia coli chi7122]
gi|412971785|emb|CCJ46450.1| ATP-dependent DNA helicase [Escherichia coli]
gi|429355564|gb|EKY92252.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02030]
gi|429355754|gb|EKY92439.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02033-1]
gi|429357134|gb|EKY93808.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02092]
gi|429371198|gb|EKZ07757.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02093]
gi|429371402|gb|EKZ07959.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02281]
gi|429375432|gb|EKZ11967.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02318]
gi|429387228|gb|EKZ23670.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-02913]
gi|429389790|gb|EKZ26209.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03439]
gi|429390496|gb|EKZ26908.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-03943]
gi|429400930|gb|EKZ37241.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
11-04080]
gi|429401897|gb|EKZ38191.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429404472|gb|EKZ40747.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429412703|gb|EKZ48894.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429415644|gb|EKZ51805.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429422963|gb|EKZ59072.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427510|gb|EKZ63592.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429431815|gb|EKZ67858.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429439320|gb|EKZ75307.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429443687|gb|EKZ79637.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429448312|gb|EKZ84227.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429454076|gb|EKZ89941.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429458539|gb|EKZ94363.1| ATP-dependent DNA helicase recQ [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430873088|gb|ELB96667.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE4]
gi|430883034|gb|ELC06041.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE5]
gi|430890837|gb|ELC13397.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE10]
gi|430903003|gb|ELC24748.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE16]
gi|430903107|gb|ELC24851.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE15]
gi|430913882|gb|ELC35001.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE21]
gi|430932536|gb|ELC52957.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE39]
gi|430935905|gb|ELC56200.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE44]
gi|430949889|gb|ELC69284.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE187]
gi|430959658|gb|ELC77969.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE188]
gi|430962773|gb|ELC80625.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE189]
gi|430970881|gb|ELC87926.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE191]
gi|430977239|gb|ELC94090.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE193]
gi|430978984|gb|ELC95773.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE201]
gi|431003540|gb|ELD19023.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE210]
gi|431013410|gb|ELD27143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE212]
gi|431030698|gb|ELD43704.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE214]
gi|431034609|gb|ELD46535.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE220]
gi|431037921|gb|ELD48891.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE224]
gi|431047355|gb|ELD57356.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE230]
gi|431059796|gb|ELD69143.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE233]
gi|431096876|gb|ELE02331.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE53]
gi|431104206|gb|ELE08809.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE55]
gi|431111518|gb|ELE15417.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE56]
gi|431117383|gb|ELE20622.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE58]
gi|431125535|gb|ELE27937.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE60]
gi|431127306|gb|ELE29608.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE62]
gi|431144281|gb|ELE45988.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE67]
gi|431146062|gb|ELE47661.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE72]
gi|431160135|gb|ELE60653.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE77]
gi|431175867|gb|ELE75854.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE81]
gi|431177503|gb|ELE77427.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE86]
gi|431186593|gb|ELE86133.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE87]
gi|431188169|gb|ELE87668.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE93]
gi|431196510|gb|ELE95436.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE111]
gi|431207204|gb|ELF05474.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE119]
gi|431209667|gb|ELF07738.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE142]
gi|431218899|gb|ELF16324.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE156]
gi|431234396|gb|ELF29797.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE161]
gi|431239716|gb|ELF34188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE169]
gi|431239876|gb|ELF34342.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE171]
gi|431278992|gb|ELF69963.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE42]
gi|431289696|gb|ELF80437.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE43]
gi|431293209|gb|ELF83589.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE29]
gi|431299667|gb|ELF89238.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE22]
gi|431321465|gb|ELG09066.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE50]
gi|431323834|gb|ELG11300.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE59]
gi|431325714|gb|ELG13095.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE63]
gi|431335017|gb|ELG22161.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE65]
gi|431335488|gb|ELG22626.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE78]
gi|431347763|gb|ELG34641.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE79]
gi|431352550|gb|ELG39319.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE91]
gi|431373433|gb|ELG59039.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE118]
gi|431377686|gb|ELG62812.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE123]
gi|431392085|gb|ELG75688.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE141]
gi|431400822|gb|ELG84186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE146]
gi|431417427|gb|ELG99890.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE154]
gi|431427140|gb|ELH09183.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE194]
gi|431459357|gb|ELH39670.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE184]
gi|431459691|gb|ELH39983.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE183]
gi|431466733|gb|ELH46750.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE196]
gi|431467349|gb|ELH47359.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE202]
gi|431477546|gb|ELH57314.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE197]
gi|431478399|gb|ELH58147.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE207]
gi|431485180|gb|ELH64844.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE209]
gi|431493841|gb|ELH73433.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE215]
gi|431501796|gb|ELH80772.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE218]
gi|431504472|gb|ELH83098.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE223]
gi|431520867|gb|ELH98186.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE229]
gi|431521765|gb|ELH99004.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE227]
gi|431526226|gb|ELI02985.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE104]
gi|431530167|gb|ELI06852.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE106]
gi|431545604|gb|ELI20252.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE112]
gi|431547922|gb|ELI22215.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE113]
gi|431551988|gb|ELI25951.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE117]
gi|431561551|gb|ELI34918.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE120]
gi|431565593|gb|ELI38672.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE124]
gi|431577598|gb|ELI50229.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE125]
gi|431597335|gb|ELI67242.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE133]
gi|431600495|gb|ELI70165.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE137]
gi|431615751|gb|ELI84873.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE145]
gi|431630352|gb|ELI98689.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE153]
gi|431639691|gb|ELJ07541.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE160]
gi|431642027|gb|ELJ09753.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE163]
gi|431653007|gb|ELJ20124.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE166]
gi|431655382|gb|ELJ22415.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE167]
gi|431657099|gb|ELJ24067.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE168]
gi|431666796|gb|ELJ33421.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE174]
gi|431669744|gb|ELJ36113.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE176]
gi|431683122|gb|ELJ48761.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE179]
gi|431683735|gb|ELJ49363.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE180]
gi|431687667|gb|ELJ53211.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE232]
gi|431701585|gb|ELJ66500.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE88]
gi|431712921|gb|ELJ77188.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE90]
gi|431716632|gb|ELJ80739.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE94]
gi|431727917|gb|ELJ91647.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE97]
gi|431731295|gb|ELJ94801.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE99]
gi|441608587|emb|CCP95671.1| ATP-dependent DNA helicase RecQ [Escherichia coli O10:K5(L):H4 str.
ATCC 23506]
gi|441715872|emb|CCQ04315.1| ATP-dependent DNA helicase RecQ [Escherichia coli Nissle 1917]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|37927351|pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|419926481|ref|ZP_14444247.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
gi|388382669|gb|EIL44516.1| ATP-dependent DNA helicase RecQ [Escherichia coli 541-15]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|407692774|ref|YP_006817563.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
gi|407388831|gb|AFU19324.1| ATP-dependent DNA helicase RecQ [Actinobacillus suis H91-0380]
Length = 602
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/389 (41%), Positives = 237/389 (60%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGIEAGFLNSTQTFEEQQDVEQKALSGQ--LKLLYLSPEKVMTQGFFHFI--- 130
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFRP Y L +LRN P+VP++ALTATA P + D+++
Sbjct: 131 -SLCKISLIAVDEAHCVSQWGHDFRPEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K L + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKF---KPMEQLAKFIGKQQGKSGIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+ IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLATRKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ +L + + ++
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEPESEQRDI---KQHKL 363
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
++I F+ E CRR +L FGE
Sbjct: 364 QAIGAFA------ESQTCRRLVLLNYFGE 386
>gi|386399772|ref|ZP_10084550.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM1253]
gi|385740398|gb|EIG60594.1| ATP-dependent DNA helicase RecQ [Bradyrhizobium sp. WSM1253]
Length = 623
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/432 (42%), Positives = 249/432 (57%), Gaps = 39/432 (9%)
Query: 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGG 65
+ M S S + P ++AL +LR FG FR Q + I+ V G +C LMPTGGG
Sbjct: 1 MPMSSPSTAPLSAPAQGRDAL-SVLRSVFGLPGFRGAQGEIIRHVTDGGNCLVLMPTGGG 59
Query: 66 KSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLD 125
KS+CYQ+PAL + G +VVSPLIALM +QV + E G+ L+S+ T Q + I L
Sbjct: 60 KSLCYQLPALLREGCGVVVSPLIALMRDQVAAMLEAGVNAAALNSSLTPQEASDIERRLI 119
Query: 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185
+G L LLYV PE TP ++ L +R + L AIDEAHC+S WGHDFRP Y LS
Sbjct: 120 AG--DLDLLYVAPERLLTPRCLALL----ARAKVALFAIDEAHCVSQWGHDFRPEYVGLS 173
Query: 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--------R 237
+ PDVP +ALTATA +K+++E L L + SSF+RPN+ YE+ +
Sbjct: 174 VIAERFPDVPRIALTATADELTRKEIVERLHLADSPHFVSSFDRPNIRYEIVDKRNAVSQ 233
Query: 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
KD + + +A GD +VYCL R +E++A L GI+ YHAGL+ R
Sbjct: 234 LKDFIRERHA---------GD-AGVVYCLSRKRVEEVAAALDDAGIAALPYHAGLDSSVR 283
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357
S D +++ V+VAT+AFGMGID+ DVR V H ++PKS+EA+YQE+GRAGRD PS
Sbjct: 284 SRNQDRFLNEDGIVIVATIAFGMGIDKPDVRFVAHLDLPKSIEAYYQETGRAGRDGKPSA 343
Query: 358 SLLYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414
+ + YG+ D +RRM ++S S F + SI +V E CRR+
Sbjct: 344 AWMAYGLSDIVQQRRM-----IDESSGSDEF------KRVSIGKLDALVGLAETPHCRRR 392
Query: 415 KILESFGEQVLG 426
++L FGE V+G
Sbjct: 393 RLLAYFGEIVMG 404
>gi|300904077|ref|ZP_07121957.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|301303719|ref|ZP_07209840.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|415865367|ref|ZP_11538229.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
gi|300403957|gb|EFJ87495.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 84-1]
gi|300841019|gb|EFK68779.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 124-1]
gi|315254188|gb|EFU34156.1| ATP-dependent DNA helicase RecQ [Escherichia coli MS 85-1]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAILFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|33151690|ref|NP_873043.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
gi|33147911|gb|AAP95432.1| ATP-dependent DNA helicase [Haemophilus ducreyi 35000HP]
Length = 601
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 161/389 (41%), Positives = 240/389 (61%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR+ Q + I+AVL+G+DC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQHFRNGQQEVIEAVLTGQDCLVIMTTGGGKSLCYQVPALCLEGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L GI +++ +QT + + ++ + SG+ L+LLY++PE T F S +
Sbjct: 76 QVDQLLTYGIEAGYINCSQTFEEQQRVEQKALSGQ--LKLLYLSPEKVMTQAFFSFI--F 131
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
H + ++L+ +DEAHC+S WGHDFRP Y L LR +P++ALTATA P +KD+++
Sbjct: 132 HCK--ISLIVVDEAHCVSQWGHDFRPEYALLGRLRKTFVGIPLMALTATADPTTRKDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
LCL NP SF+RPN+ Y V+ K + +L+ G + I+YC R +E
Sbjct: 190 HLCLTNPYTYLGSFDRPNIRYTVQQKFKPLEQLTQF--ILRQQGKS-GIIYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
+S L+A IS YHAG+ + R V + + Q+VVAT+AFGMGI++ +VR V HF
Sbjct: 247 ISEKLAARKISVMGYHAGMPVQQREMVQEAFQRDNIQIVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+EA+YQE+GRAGRD LPS+++L+Y D ME L + + + ++
Sbjct: 307 DLPRSIEAYYQETGRAGRDDLPSEAVLFYNPSDYAWMEKTLLEEPETDQRQI---KQHKL 363
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
++I F+ E CRR +L FGE
Sbjct: 364 QAIGAFA------ESQTCRRLVLLNYFGE 386
>gi|82546173|ref|YP_410120.1| ATP-dependent DNA helicase RecQ [Shigella boydii Sb227]
gi|416295404|ref|ZP_11651155.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CDC 796-83]
gi|81247584|gb|ABB68292.1| ATP-dependent DNA helicase [Shigella boydii Sb227]
gi|320186210|gb|EFW60949.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CDC 796-83]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|15966070|ref|NP_386423.1| ATP-dependent DNA helicase [Sinorhizobium meliloti 1021]
gi|384530203|ref|YP_005714291.1| ATP-dependent DNA helicase RecQ [Sinorhizobium meliloti BL225C]
gi|384535316|ref|YP_005719401.1| ATP-dependent DNA helicase RecQ [Sinorhizobium meliloti SM11]
gi|433614143|ref|YP_007190941.1| ATP-dependent DNA helicase RecQ [Sinorhizobium meliloti GR4]
gi|15075340|emb|CAC46896.1| Probable ATP-dependent DNA helicase [Sinorhizobium meliloti 1021]
gi|333812379|gb|AEG05048.1| ATP-dependent DNA helicase RecQ [Sinorhizobium meliloti BL225C]
gi|336032208|gb|AEH78140.1| ATP-dependent DNA helicase RecQ [Sinorhizobium meliloti SM11]
gi|429552333|gb|AGA07342.1| ATP-dependent DNA helicase RecQ [Sinorhizobium meliloti GR4]
Length = 636
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 237/426 (55%), Gaps = 26/426 (6%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEAL---VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
++P S ++ L E E + + LL+ +G++ FR +Q + V++G D L
Sbjct: 11 RAPDESDSMPESHNTGRLFETEGVSNPLDLLKRIYGYSTFRGQQQAVVDHVVAGGDAVVL 70
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
PTG GKS+C+QIPAL + G+ +VVSPLIALM +QV LK+ GI L+S+ T
Sbjct: 71 FPTGAGKSLCFQIPALCRRGVGIVVSPLIALMRDQVEALKQLGIRAAALNSSLTRDEAIA 130
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ L + L LLYVTPE T GF + + L AIDEAHC+S WGHDFRP
Sbjct: 131 VRRALS--RDELDLLYVTPERAVTDGFAEMIADAD----IALFAIDEAHCVSQWGHDFRP 184
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
YR L L P VP +ALTATA P + D++E L L V SSF+RPN+ YE+ +
Sbjct: 185 EYRGLGCLAERFPGVPRIALTATADPHTRDDMIERLGLGGARVFASSFDRPNIAYEIVER 244
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
D L L D IVYCL R ++ + +L A GI YHAG+ AR +
Sbjct: 245 D---QPRQQLLRFLSRFKDASGIVYCLSRAKVEDTAEWLDAQGIRALPYHAGMERAARDA 301
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
D ++ +VATVAFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD LPS+
Sbjct: 302 HQDAFLKEENLCLVATVAFGMGIDKPDVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVW 361
Query: 360 LYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKI 416
+ YGM D RRRM ++ + ER+ S ++ CE +GCRR+ I
Sbjct: 362 MAYGMADVIQRRRM-----IDEGGAPEEIKRIERAKLNS------LLAICETAGCRRQAI 410
Query: 417 LESFGE 422
L FGE
Sbjct: 411 LAHFGE 416
>gi|432566205|ref|ZP_19802760.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
gi|431089461|gb|ELD95275.1| ATP-dependent DNA helicase recQ [Escherichia coli KTE51]
Length = 611
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVIHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|417684666|ref|ZP_12334002.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|420327851|ref|ZP_14829589.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|420355277|ref|ZP_14856349.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|421684822|ref|ZP_16124603.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
gi|332088521|gb|EGI93637.1| ATP-dependent DNA helicase RecQ [Shigella boydii 3594-74]
gi|391245516|gb|EIQ04783.1| ATP-dependent DNA helicase RecQ [Shigella flexneri CCH060]
gi|391273146|gb|EIQ31974.1| ATP-dependent DNA helicase RecQ [Shigella boydii 4444-74]
gi|404335343|gb|EJZ61813.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 1485-80]
Length = 609
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|74314334|ref|YP_312753.1| ATP-dependent DNA helicase RecQ [Shigella sonnei Ss046]
gi|157163298|ref|YP_001460616.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|162135918|ref|YP_026263.3| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|170083303|ref|YP_001732623.1| ATP-dependent DNA helicase RecQ [Escherichia coli str. K-12 substr.
DH10B]
gi|187734194|ref|YP_001882520.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188494940|ref|ZP_03002210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218697543|ref|YP_002405210.1| ATP-dependent DNA helicase RecQ [Escherichia coli 55989]
gi|218701485|ref|YP_002409114.1| ATP-dependent DNA helicase RecQ [Escherichia coli IAI39]
gi|222158515|ref|YP_002558654.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238902897|ref|YP_002928693.1| ATP-dependent DNA helicase RecQ [Escherichia coli BW2952]
gi|254795820|ref|YP_003080657.1| ATP-dependent DNA helicase RecQ [Escherichia coli O157:H7 str.
TW14359]
gi|260857772|ref|YP_003231663.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|293468140|ref|ZP_06664552.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|383181074|ref|YP_005459079.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|386601849|ref|YP_006103355.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|386616632|ref|YP_006136298.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|386641456|ref|YP_006108254.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|387509272|ref|YP_006161528.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|387609630|ref|YP_006098486.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|388479428|ref|YP_491620.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
W3110]
gi|407466829|ref|YP_006786729.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407484445|ref|YP_006781595.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484991|ref|YP_006772537.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414578705|ref|ZP_11435867.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|415773800|ref|ZP_11486365.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|415786023|ref|ZP_11493337.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|415811064|ref|ZP_11503414.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|415846355|ref|ZP_11525434.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|417583446|ref|ZP_12234244.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|417615484|ref|ZP_12265932.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|417620493|ref|ZP_12270894.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|417631303|ref|ZP_12281535.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|417636778|ref|ZP_12286983.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|417641842|ref|ZP_12291966.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|417675001|ref|ZP_12324430.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|417709647|ref|ZP_12358664.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|417807513|ref|ZP_12454440.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|417829992|ref|ZP_12476531.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|417835254|ref|ZP_12481693.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|417945670|ref|ZP_12588900.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|417977689|ref|ZP_12618470.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|418269891|ref|ZP_12888068.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|418305454|ref|ZP_12917248.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|419043191|ref|ZP_13590168.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|419053701|ref|ZP_13600566.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|419059737|ref|ZP_13606535.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|419065783|ref|ZP_13612482.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|419072168|ref|ZP_13617765.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|419077975|ref|ZP_13623471.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|419083146|ref|ZP_13628587.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|419089130|ref|ZP_13634478.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|419094916|ref|ZP_13640190.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|419100733|ref|ZP_13645918.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|419101663|ref|ZP_13646838.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|419112709|ref|ZP_13657750.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|419117387|ref|ZP_13662394.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|419123336|ref|ZP_13668272.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|419128635|ref|ZP_13673503.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|419134045|ref|ZP_13678868.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|419139187|ref|ZP_13683976.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|419144930|ref|ZP_13689656.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|419150857|ref|ZP_13695502.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|419156337|ref|ZP_13700890.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|419161695|ref|ZP_13706184.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|419166788|ref|ZP_13711235.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|419172782|ref|ZP_13716653.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|419177507|ref|ZP_13721313.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|419183343|ref|ZP_13726948.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|419188957|ref|ZP_13732459.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|419193893|ref|ZP_13737331.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|419212347|ref|ZP_13755409.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|419218190|ref|ZP_13761179.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|419229300|ref|ZP_13772135.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|419235104|ref|ZP_13777867.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|419240508|ref|ZP_13783209.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|419245923|ref|ZP_13788552.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|419251927|ref|ZP_13794490.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|419257379|ref|ZP_13799876.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|419263508|ref|ZP_13805912.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|419264798|ref|ZP_13807187.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|419270449|ref|ZP_13812783.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|419286604|ref|ZP_13828763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|419292039|ref|ZP_13834121.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|419297319|ref|ZP_13839353.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|419308855|ref|ZP_13850743.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|419393861|ref|ZP_13934658.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|419399220|ref|ZP_13939979.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|419404466|ref|ZP_13945182.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|419409630|ref|ZP_13950311.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|419415188|ref|ZP_13955818.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|419812399|ref|ZP_14337266.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|419874689|ref|ZP_14396603.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|419879645|ref|ZP_14401076.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|419902626|ref|ZP_14421829.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|419905653|ref|ZP_14424609.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|420099093|ref|ZP_14610339.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|420110650|ref|ZP_14620605.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|420113527|ref|ZP_14623259.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|420119768|ref|ZP_14629022.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|420126752|ref|ZP_14635465.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|420131499|ref|ZP_14639935.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|420272370|ref|ZP_14774716.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|420277955|ref|ZP_14780233.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|420283156|ref|ZP_14785386.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|420284102|ref|ZP_14786323.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|420289859|ref|ZP_14792029.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|420300926|ref|ZP_14802968.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|420306852|ref|ZP_14808837.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|420312140|ref|ZP_14814065.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|420317897|ref|ZP_14819765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|420322644|ref|ZP_14824463.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|420333543|ref|ZP_14835179.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|420349685|ref|ZP_14851058.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|420361261|ref|ZP_14862203.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|420365796|ref|ZP_14866655.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|420382758|ref|ZP_14882188.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|421814877|ref|ZP_16250576.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|421820625|ref|ZP_16256107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421826602|ref|ZP_16261954.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|421833458|ref|ZP_16268735.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|423728051|ref|ZP_17701830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|424080156|ref|ZP_17817094.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|424086551|ref|ZP_17823020.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|424092965|ref|ZP_17828872.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|424099656|ref|ZP_17834892.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|424105849|ref|ZP_17840562.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|424112488|ref|ZP_17846698.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|424118422|ref|ZP_17852240.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|424124621|ref|ZP_17857901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|424130785|ref|ZP_17863671.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|424137098|ref|ZP_17869517.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|424143655|ref|ZP_17875490.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|424150024|ref|ZP_17881383.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|424163751|ref|ZP_17886802.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|424257401|ref|ZP_17892343.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|424336089|ref|ZP_17898279.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|424452358|ref|ZP_17903983.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|424458522|ref|ZP_17909602.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|424465052|ref|ZP_17915355.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|424471287|ref|ZP_17921068.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|424477774|ref|ZP_17927073.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|424483558|ref|ZP_17932522.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|424489753|ref|ZP_17938273.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|424496448|ref|ZP_17943963.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|424503074|ref|ZP_17949941.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|424509345|ref|ZP_17955696.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|424516755|ref|ZP_17961322.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|424522879|ref|ZP_17966967.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|424528750|ref|ZP_17972445.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|424534892|ref|ZP_17978224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|424540980|ref|ZP_17983908.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|424547130|ref|ZP_17989443.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|424553325|ref|ZP_17995135.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|424559526|ref|ZP_18000903.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|424565847|ref|ZP_18006833.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|424571976|ref|ZP_18012493.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|424578134|ref|ZP_18018151.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|424583956|ref|ZP_18023586.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|424746311|ref|ZP_18174557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424756582|ref|ZP_18184393.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|425100630|ref|ZP_18503350.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|425106704|ref|ZP_18509003.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|425112706|ref|ZP_18514611.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|425117443|ref|ZP_18519216.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|425122162|ref|ZP_18523834.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|425128636|ref|ZP_18529790.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|425134402|ref|ZP_18535238.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|425140995|ref|ZP_18541361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|425146671|ref|ZP_18546648.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|425152786|ref|ZP_18552384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|425158685|ref|ZP_18557932.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|425165005|ref|ZP_18563876.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|425170752|ref|ZP_18569210.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|425176796|ref|ZP_18574900.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|425182855|ref|ZP_18580536.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|425189156|ref|ZP_18586411.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|425195883|ref|ZP_18592638.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|425202362|ref|ZP_18598555.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|425208739|ref|ZP_18604521.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|425214496|ref|ZP_18609883.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|425220623|ref|ZP_18615570.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|425227269|ref|ZP_18621720.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|425233426|ref|ZP_18627450.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|425239348|ref|ZP_18633053.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|425245582|ref|ZP_18638874.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|425251778|ref|ZP_18644706.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|425257577|ref|ZP_18650057.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|425263832|ref|ZP_18655808.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|425269824|ref|ZP_18661435.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|425275115|ref|ZP_18666494.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|425285691|ref|ZP_18676703.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|425291039|ref|ZP_18681846.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|425297302|ref|ZP_18687410.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|425313995|ref|ZP_18703147.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|425319977|ref|ZP_18708738.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|425326116|ref|ZP_18714427.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|425332427|ref|ZP_18720224.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|425338604|ref|ZP_18725927.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|425344898|ref|ZP_18731771.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|425350737|ref|ZP_18737180.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|425357009|ref|ZP_18743055.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|425362958|ref|ZP_18748590.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|425369225|ref|ZP_18754286.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|425375530|ref|ZP_18760154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|425382165|ref|ZP_18766145.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|425388417|ref|ZP_18771960.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|425395144|ref|ZP_18778235.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|425401199|ref|ZP_18783889.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|425407294|ref|ZP_18789499.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|425413652|ref|ZP_18795398.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|425419968|ref|ZP_18801223.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|425431264|ref|ZP_18811857.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|428949672|ref|ZP_19021928.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|428955744|ref|ZP_19027518.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|428961768|ref|ZP_19033029.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|428968370|ref|ZP_19039058.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|428974146|ref|ZP_19044441.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|428980535|ref|ZP_19050328.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|428986311|ref|ZP_19055684.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|428992459|ref|ZP_19061431.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|428998356|ref|ZP_19066931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|429004744|ref|ZP_19072788.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|429010783|ref|ZP_19078163.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|429017247|ref|ZP_19084107.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|429023086|ref|ZP_19089586.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|429029170|ref|ZP_19095125.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|429035310|ref|ZP_19100818.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|429041420|ref|ZP_19106492.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|429047246|ref|ZP_19111942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|429052597|ref|ZP_19117153.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|429058154|ref|ZP_19122396.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|429063674|ref|ZP_19127630.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|429069876|ref|ZP_19133298.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|429075653|ref|ZP_19138895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|429080853|ref|ZP_19143978.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429829081|ref|ZP_19360059.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429835546|ref|ZP_19365772.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443619893|ref|YP_007383749.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444927567|ref|ZP_21246820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444933176|ref|ZP_21252172.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444938639|ref|ZP_21257361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444944245|ref|ZP_21262719.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444949646|ref|ZP_21267927.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444955383|ref|ZP_21273438.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444960749|ref|ZP_21278560.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444965954|ref|ZP_21283505.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444972010|ref|ZP_21289338.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444977298|ref|ZP_21294364.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444982637|ref|ZP_21299533.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444988047|ref|ZP_21304814.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444993429|ref|ZP_21310059.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444998607|ref|ZP_21315096.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|445004152|ref|ZP_21320531.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|445009571|ref|ZP_21325789.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|445014650|ref|ZP_21330744.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|445020572|ref|ZP_21336526.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|445025933|ref|ZP_21341746.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|445031388|ref|ZP_21347043.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|445036812|ref|ZP_21352329.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|445042490|ref|ZP_21357851.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|445047694|ref|ZP_21362931.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|445061301|ref|ZP_21373807.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|450226865|ref|ZP_21897539.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|450252923|ref|ZP_21902297.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
gi|54041622|sp|P15043.5|RECQ_ECOLI RecName: Full=ATP-dependent DNA helicase RecQ
gi|48994977|gb|AAT48221.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MG1655]
gi|73857811|gb|AAZ90518.1| ATP-dependent DNA helicase [Shigella sonnei Ss046]
gi|85676229|dbj|BAE77479.1| ATP-dependent DNA helicase [Escherichia coli str. K12 substr.
W3110]
gi|157068978|gb|ABV08233.1| ATP-dependent DNA helicase RecQ [Escherichia coli HS]
gi|169891138|gb|ACB04845.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
DH10B]
gi|187431186|gb|ACD10460.1| ATP-dependent DNA helicase RecQ [Shigella boydii CDC 3083-94]
gi|188490139|gb|EDU65242.1| ATP-dependent DNA helicase RecQ [Escherichia coli 53638]
gi|218354275|emb|CAV00962.1| ATP-dependent DNA helicase [Escherichia coli 55989]
gi|218371471|emb|CAR19306.1| ATP-dependent DNA helicase [Escherichia coli IAI39]
gi|222035520|emb|CAP78265.1| ATP-dependent DNA helicase recQ [Escherichia coli LF82]
gi|238860042|gb|ACR62040.1| ATP-dependent DNA helicase [Escherichia coli BW2952]
gi|254595220|gb|ACT74581.1| ATP-dependent DNA helicase [Escherichia coli O157:H7 str. TW14359]
gi|257756421|dbj|BAI27923.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
11368]
gi|284923930|emb|CBG37029.1| ATP-dependent DNA helicase [Escherichia coli 042]
gi|291321518|gb|EFE60956.1| ATP-dependent DNA helicase RecQ [Escherichia coli B088]
gi|294490610|gb|ADE89366.1| ATP-dependent DNA helicase RecQ [Escherichia coli IHE3034]
gi|307555948|gb|ADN48723.1| ATP-dependent DNA helicase RecQ [Escherichia coli ABU 83972]
gi|315618731|gb|EFU99316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3431]
gi|323155231|gb|EFZ41415.1| ATP-dependent DNA helicase RecQ [Escherichia coli EPECa14]
gi|323167577|gb|EFZ53283.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 53G]
gi|323173439|gb|EFZ59068.1| ATP-dependent DNA helicase RecQ [Escherichia coli LT-68]
gi|332084978|gb|EGI90160.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 155-74]
gi|332345801|gb|AEE59135.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNK88]
gi|332996969|gb|EGK16587.1| ATP-dependent DNA helicase RecQ [Shigella flexneri VA-6]
gi|335573445|gb|EGM59800.1| ATP-dependent DNA helicase RecQ [Shigella flexneri J1713]
gi|339417552|gb|AEJ59224.1| ATP-dependent DNA helicase RecQ [Escherichia coli UMNF18]
gi|340731834|gb|EGR60973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
01-09591]
gi|340737771|gb|EGR72025.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
LB226692]
gi|342362570|gb|EGU26687.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH140A]
gi|344192682|gb|EGV46771.1| ATP-dependent DNA helicase RecQ [Escherichia coli XH001]
gi|345333780|gb|EGW66227.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_B2F1]
gi|345357660|gb|EGW89852.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_EH250]
gi|345369561|gb|EGX01544.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_MHI813]
gi|345369710|gb|EGX01692.1| ATP-dependent DNA helicase RecQ [Escherichia coli G58-1]
gi|345384846|gb|EGX14704.1| ATP-dependent DNA helicase RecQ [Escherichia coli STEC_S1191]
gi|345389797|gb|EGX19598.1| ATP-dependent DNA helicase RecQ [Escherichia coli TX1999]
gi|359333954|dbj|BAL40401.1| ATP-dependent DNA helicase [Escherichia coli str. K-12 substr.
MDS42]
gi|374361266|gb|AEZ42973.1| ATP-dependent DNA helicase RecQ [Escherichia coli O55:H7 str.
RM12579]
gi|377889383|gb|EHU53847.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3B]
gi|377900947|gb|EHU65271.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3A]
gi|377901914|gb|EHU66224.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3C]
gi|377903769|gb|EHU68059.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3D]
gi|377906294|gb|EHU70540.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3E]
gi|377916995|gb|EHU81064.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC3F]
gi|377923006|gb|EHU86977.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4A]
gi|377926673|gb|EHU90603.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4B]
gi|377937309|gb|EHV01090.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4D]
gi|377937816|gb|EHV01589.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4C]
gi|377952265|gb|EHV15861.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4F]
gi|377957081|gb|EHV20618.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC4E]
gi|377957368|gb|EHV20903.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5A]
gi|377960982|gb|EHV24457.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5B]
gi|377969378|gb|EHV32756.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5C]
gi|377970401|gb|EHV33763.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5D]
gi|377980238|gb|EHV43504.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC5E]
gi|377988783|gb|EHV51958.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6B]
gi|377989115|gb|EHV52284.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6A]
gi|377992641|gb|EHV55787.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6C]
gi|378003621|gb|EHV66662.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6D]
gi|378006269|gb|EHV69255.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC6E]
gi|378010076|gb|EHV73023.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7A]
gi|378020960|gb|EHV83688.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7C]
gi|378023963|gb|EHV86628.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7D]
gi|378028415|gb|EHV91033.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7B]
gi|378035128|gb|EHV97690.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC7E]
gi|378048184|gb|EHW10539.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8C]
gi|378057740|gb|EHW19963.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC8D]
gi|378068432|gb|EHW30533.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9A]
gi|378073450|gb|EHW35501.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9B]
gi|378078658|gb|EHW40639.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9C]
gi|378086522|gb|EHW48397.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9D]
gi|378088985|gb|EHW50834.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC9E]
gi|378096895|gb|EHW58661.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10A]
gi|378102153|gb|EHW63835.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10B]
gi|378119748|gb|EHW81237.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10C]
gi|378121916|gb|EHW83364.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10D]
gi|378124653|gb|EHW86058.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11A]
gi|378125192|gb|EHW86594.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC10F]
gi|378138180|gb|EHW99439.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11B]
gi|378144053|gb|EHX05229.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC11D]
gi|378233768|gb|EHX93852.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15A]
gi|378239942|gb|EHX99919.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15B]
gi|378242825|gb|EHY02776.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15C]
gi|378250902|gb|EHY10804.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15D]
gi|378255628|gb|EHY15485.1| ATP-dependent DNA helicase RecQ [Escherichia coli DEC15E]
gi|385154769|gb|EIF16778.1| ATP-dependent DNA helicase RecQ [Escherichia coli O32:H37 str. P4]
gi|388350582|gb|EIL15941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9534]
gi|388370946|gb|EIL34439.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9545]
gi|388373611|gb|EIL36859.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9942]
gi|388380812|gb|EIL43394.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10026]
gi|390637133|gb|EIN16689.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1996]
gi|390637513|gb|EIN17059.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA505]
gi|390638307|gb|EIN17820.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA517]
gi|390655763|gb|EIN33679.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1985]
gi|390656665|gb|EIN34525.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93-001]
gi|390659431|gb|EIN37196.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1990]
gi|390673956|gb|EIN50168.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA3]
gi|390677280|gb|EIN53339.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA5]
gi|390680714|gb|EIN56541.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA9]
gi|390691815|gb|EIN66538.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA10]
gi|390696174|gb|EIN70668.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA14]
gi|390697410|gb|EIN71830.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA15]
gi|390711245|gb|EIN84228.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA22]
gi|390717538|gb|EIN90322.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA24]
gi|390718182|gb|EIN90940.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA25]
gi|390724300|gb|EIN96860.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA28]
gi|390736865|gb|EIO08185.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA31]
gi|390737487|gb|EIO08782.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA32]
gi|390741100|gb|EIO12195.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA33]
gi|390755766|gb|EIO25297.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA40]
gi|390758421|gb|EIO27875.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA39]
gi|390761852|gb|EIO31126.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA41]
gi|390764847|gb|EIO34042.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA42]
gi|390779055|gb|EIO46792.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW06591]
gi|390786025|gb|EIO53561.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW07945]
gi|390796590|gb|EIO63861.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10246]
gi|390799973|gb|EIO67092.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09098]
gi|390803163|gb|EIO70187.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW11039]
gi|390804554|gb|EIO71520.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09109]
gi|390813588|gb|EIO80198.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW10119]
gi|390821916|gb|EIO88072.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW09195]
gi|390822385|gb|EIO88509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4203]
gi|390827531|gb|EIO93291.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4196]
gi|390840654|gb|EIP04669.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14313]
gi|390842695|gb|EIP06532.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW14301]
gi|390847735|gb|EIP11259.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4421]
gi|390858215|gb|EIP20623.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4422]
gi|390862503|gb|EIP24686.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4013]
gi|390866548|gb|EIP28505.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4402]
gi|390874830|gb|EIP35918.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4439]
gi|390880191|gb|EIP40894.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4436]
gi|390890079|gb|EIP49765.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4437]
gi|390891420|gb|EIP51051.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC4448]
gi|390897852|gb|EIP57152.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1738]
gi|390905830|gb|EIP64755.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1734]
gi|390915489|gb|EIP74001.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1845]
gi|390915828|gb|EIP74328.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1863]
gi|391244920|gb|EIQ04196.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2850-71]
gi|391245159|gb|EIQ04433.1| ATP-dependent DNA helicase RecQ [Shigella flexneri K-1770]
gi|391265596|gb|EIQ24564.1| ATP-dependent DNA helicase RecQ [Shigella boydii 965-58]
gi|391277456|gb|EIQ36200.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3226-85]
gi|391280624|gb|EIQ39291.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 3233-85]
gi|391291630|gb|EIQ50010.1| ATP-dependent DNA helicase RecQ [Shigella sonnei 4822-66]
gi|391297979|gb|EIQ56004.1| ATP-dependent DNA helicase RecQ [Shigella dysenteriae 225-75]
gi|394391248|gb|EJE68134.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10224]
gi|394402810|gb|EJE78500.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9553]
gi|394411617|gb|EJE85840.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10021]
gi|394423765|gb|EJE96980.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CVM9455]
gi|394430839|gb|EJF03117.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM10030]
gi|394431778|gb|EJF03941.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CVM9952]
gi|397894923|gb|EJL11359.1| ATP-dependent DNA helicase RecQ [Shigella sonnei str. Moseley]
gi|406780153|gb|AFS59577.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407056742|gb|AFS76793.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2011C-3493]
gi|407062864|gb|AFS83911.1| ATP-dependent DNA helicase RecQ [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408061419|gb|EKG95938.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA7]
gi|408063920|gb|EKG98407.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK920]
gi|408065096|gb|EKG99572.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA34]
gi|408075235|gb|EKH09473.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA506]
gi|408080230|gb|EKH14314.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA507]
gi|408088415|gb|EKH21787.1| ATP-dependent DNA helicase RecQ [Escherichia coli FDA504]
gi|408094586|gb|EKH27603.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1999]
gi|408100770|gb|EKH33252.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK1997]
gi|408105693|gb|EKH37840.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE1487]
gi|408112433|gb|EKH44083.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE037]
gi|408118686|gb|EKH49805.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK2001]
gi|408125003|gb|EKH55643.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA4]
gi|408134793|gb|EKH64609.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA23]
gi|408136802|gb|EKH66532.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA49]
gi|408143753|gb|EKH73027.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA45]
gi|408152134|gb|EKH80583.1| ATP-dependent DNA helicase RecQ [Escherichia coli TT12B]
gi|408157176|gb|EKH85342.1| ATP-dependent DNA helicase RecQ [Escherichia coli MA6]
gi|408161220|gb|EKH89191.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5905]
gi|408170320|gb|EKH97532.1| ATP-dependent DNA helicase RecQ [Escherichia coli CB7326]
gi|408177268|gb|EKI04083.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC96038]
gi|408180273|gb|EKI06898.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5412]
gi|408189631|gb|EKI15342.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW15901]
gi|408197818|gb|EKI23069.1| ATP-dependent DNA helicase RecQ [Escherichia coli TW00353]
gi|408208793|gb|EKI33413.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3006]
gi|408210666|gb|EKI35226.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA38]
gi|408223507|gb|EKI47276.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1735]
gi|408234880|gb|EKI57873.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1736]
gi|408237737|gb|EKI60587.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1737]
gi|408242911|gb|EKI65462.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1846]
gi|408251792|gb|EKI73509.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1847]
gi|408256146|gb|EKI77539.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1848]
gi|408262801|gb|EKI83715.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1849]
gi|408271059|gb|EKI91208.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1850]
gi|408274185|gb|EKI94210.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1856]
gi|408282088|gb|EKJ01436.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1862]
gi|408288474|gb|EKJ07297.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1864]
gi|408293101|gb|EKJ11565.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1865]
gi|408303336|gb|EKJ20798.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1868]
gi|408304519|gb|EKJ21944.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1866]
gi|408315855|gb|EKJ32154.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1869]
gi|408321307|gb|EKJ37346.1| ATP-dependent DNA helicase RecQ [Escherichia coli EC1870]
gi|408323034|gb|EKJ39003.1| ATP-dependent DNA helicase RecQ [Escherichia coli NE098]
gi|408334009|gb|EKJ48917.1| ATP-dependent DNA helicase RecQ [Escherichia coli FRIK523]
gi|408341948|gb|EKJ56384.1| ATP-dependent DNA helicase RecQ [Escherichia coli 0.1304]
gi|408544804|gb|EKK22250.1| ATP-dependent DNA helicase RecQ [Escherichia coli 5.2239]
gi|408545335|gb|EKK22771.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4870]
gi|408545856|gb|EKK23279.1| ATP-dependent DNA helicase RecQ [Escherichia coli 6.0172]
gi|408563231|gb|EKK39371.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0566]
gi|408563445|gb|EKK39578.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0586]
gi|408564373|gb|EKK40483.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0569]
gi|408575663|gb|EKK51316.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0833]
gi|408578574|gb|EKK54091.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.2524]
gi|408588317|gb|EKK62900.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0869]
gi|408593310|gb|EKK67634.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.0221]
gi|408599002|gb|EKK72934.1| ATP-dependent DNA helicase RecQ [Escherichia coli 8.0416]
gi|408608686|gb|EKK82072.1| ATP-dependent DNA helicase RecQ [Escherichia coli 10.0821]
gi|421948409|gb|EKU05429.1| ATP-dependent DNA helicase RecQ [Escherichia coli O26:H11 str.
CFSAN001629]
gi|421949627|gb|EKU06557.1| ATP-dependent DNA helicase RecQ [Escherichia coli O111:H11 str.
CFSAN001630]
gi|427201317|gb|EKV71710.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1042]
gi|427201385|gb|EKV71774.1| ATP-dependent DNA helicase RecQ [Escherichia coli 89.0511]
gi|427204734|gb|EKV75006.1| ATP-dependent DNA helicase RecQ [Escherichia coli 88.1467]
gi|427217586|gb|EKV86644.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0091]
gi|427221262|gb|EKV90123.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.2281]
gi|427224265|gb|EKV92982.1| ATP-dependent DNA helicase RecQ [Escherichia coli 90.0039]
gi|427237737|gb|EKW05261.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0056]
gi|427238116|gb|EKW05636.1| ATP-dependent DNA helicase RecQ [Escherichia coli 93.0055]
gi|427242488|gb|EKW09895.1| ATP-dependent DNA helicase RecQ [Escherichia coli 94.0618]
gi|427255805|gb|EKW22046.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0183]
gi|427257425|gb|EKW23551.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.0943]
gi|427257996|gb|EKW24110.1| ATP-dependent DNA helicase RecQ [Escherichia coli 95.1288]
gi|427273047|gb|EKW37747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0428]
gi|427274751|gb|EKW39394.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0427]
gi|427280527|gb|EKW44885.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0939]
gi|427289002|gb|EKW52599.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0932]
gi|427295793|gb|EKW58875.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0107]
gi|427297634|gb|EKW60664.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0003]
gi|427307738|gb|EKW70166.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.1742]
gi|427310706|gb|EKW72942.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0007]
gi|427315500|gb|EKW77496.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0672]
gi|427324990|gb|EKW86445.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0678]
gi|427326402|gb|EKW87820.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0713]
gi|429250725|gb|EKY35374.1| ATP-dependent DNA helicase RecQ [Escherichia coli 96.0109]
gi|429251161|gb|EKY35784.1| ATP-dependent DNA helicase RecQ [Escherichia coli 97.0010]
gi|443424401|gb|AGC89305.1| ATP-dependent DNA helicase RecQ [Escherichia coli APEC O78]
gi|444534888|gb|ELV15066.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0814]
gi|444536334|gb|ELV16361.1| ATP-dependent DNA helicase RecQ [Escherichia coli 09BKT078844]
gi|444545204|gb|ELV24138.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0815]
gi|444554349|gb|ELV31919.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0816]
gi|444554556|gb|ELV32113.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0839]
gi|444559217|gb|ELV36456.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0848]
gi|444568882|gb|ELV45531.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1753]
gi|444572276|gb|ELV48715.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1775]
gi|444575846|gb|ELV52071.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1793]
gi|444587827|gb|ELV63229.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1805]
gi|444589282|gb|ELV64624.1| ATP-dependent DNA helicase RecQ [Escherichia coli ATCC 700728]
gi|444589460|gb|ELV64795.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA11]
gi|444603190|gb|ELV77901.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA19]
gi|444603275|gb|ELV77985.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA13]
gi|444612464|gb|ELV86757.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA2]
gi|444618782|gb|ELV92849.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA47]
gi|444620257|gb|ELV94266.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA48]
gi|444626765|gb|ELW00555.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA8]
gi|444635256|gb|ELW08688.1| ATP-dependent DNA helicase RecQ [Escherichia coli 7.1982]
gi|444637104|gb|ELW10480.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1781]
gi|444642183|gb|ELW15387.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.1762]
gi|444651734|gb|ELW24530.1| ATP-dependent DNA helicase RecQ [Escherichia coli PA35]
gi|444657008|gb|ELW29510.1| ATP-dependent DNA helicase RecQ [Escherichia coli 3.4880]
gi|444666687|gb|ELW38747.1| ATP-dependent DNA helicase RecQ [Escherichia coli 99.0670]
gi|449313574|gb|EMD03779.1| ATP-dependent DNA helicase RecQ [Escherichia coli O08]
gi|449314202|gb|EMD04376.1| ATP-dependent DNA helicase RecQ [Escherichia coli S17]
Length = 609
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|238798601|ref|ZP_04642077.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
gi|238717557|gb|EEQ09397.1| ATP-dependent DNA helicase recQ [Yersinia mollaretii ATCC 43969]
Length = 610
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 168/403 (41%), Positives = 246/403 (61%), Gaps = 23/403 (5%)
Query: 23 KEAL-VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L V++LR FG+ QFR Q + I A LSG+DC +MPTGGGKS+CYQIPAL G+
Sbjct: 9 RESLAVQVLRDTFGYQQFRPGQQEIINATLSGQDCLVVMPTGGGKSLCYQIPALVTDGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPLI+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE
Sbjct: 69 LVVSPLISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ +L + L+A+DEAHCIS WGHDFRP YR L L+ P++P++ALTA
Sbjct: 127 VMESFLDQLHQWRP----ALLAVDEAHCISQWGHDFRPEYRALGQLKQRFPNLPVIALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDT 259
TA + D++ L L PL+ SSF+RPN+ Y + ++K L L ++
Sbjct: 183 TADEATRGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGK 237
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFG
Sbjct: 238 SGIIYCNSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFG 297
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + +
Sbjct: 298 MGINKPNVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAVLLYDPADMAWLRRCLEEKPA 357
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
Q ER ++ F+ E CRR +L FGE
Sbjct: 358 GAQQDI---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|170092068|ref|XP_001877256.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648749|gb|EDR12992.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 758
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 165/434 (38%), Positives = 243/434 (55%), Gaps = 40/434 (9%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSP 86
++L FGH ++ KQ + ++A SGRD + PTG GKS+C+Q+PALA + G +VVSP
Sbjct: 14 RILTQTFGHTAYKGKQKEIVEAAASGRDVLVVAPTGMGKSLCFQVPALAAEHGTTIVVSP 73
Query: 87 LIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF 146
L+ALM+NQV L+ KG+ +S T + K I +D+ S +P +RLLYVTPE T F
Sbjct: 74 LLALMKNQVDNLRSKGVPVAAFTSETTKEEKKGIIKDMSSSRPKIRLLYVTPEKLLTQEF 133
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
L+ + LNL+ +DEAHC+S WGHDFRP YR++ R +PI+ALTATA
Sbjct: 134 QPLLEGLFDDEQLNLLVVDEAHCVSEWGHDFRPEYRRIGEFREKYVGIPIMALTATATEA 193
Query: 207 VQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRY------KDLLDDAYADLCSVLKANGD 258
VQ+D++ SL + N FNR NL+Y+++Y + + D + + ++ + G
Sbjct: 194 VQEDIVRSLKMSKDNLFCALHPFNRDNLYYQIKYLSAPDDRSKMADVFDYITTLYRRRGR 253
Query: 259 -TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV------ 311
+ I+YC +R TCDELS+YL G+S YH G+ + L W
Sbjct: 254 ASSGIIYCRKRVTCDELSSYLRGKGLSARPYHRGIGSATLDATLKRWTGGGSGEEGSVDL 313
Query: 312 -----------------VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
V+AT+AFG+GID+ DVR + H+++PKS E +YQE+GRAGRD L
Sbjct: 314 VSFSHNYAHISTGIFLKVIATIAFGLGIDKGDVRYIIHYDVPKSFEGYYQETGRAGRDGL 373
Query: 355 PSKSLLYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSG- 410
PSK +LYY +D +R+ I + N+ K ++++I S ++ + E S
Sbjct: 374 PSKCILYYSREDALYSKRLATISNANRVKEDNEGLP---PTQRAIDSISALIQFAESSTI 430
Query: 411 CRRKKILESFGEQV 424
CR I FGE +
Sbjct: 431 CRHVSICRYFGEAI 444
>gi|238789392|ref|ZP_04633178.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
gi|238722535|gb|EEQ14189.1| ATP-dependent DNA helicase recQ [Yersinia frederiksenii ATCC 33641]
Length = 610
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 165/397 (41%), Positives = 241/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++LR FG+ QFR Q + I A L+G+DC +MPTGGGKS+CYQIPAL G+ LVVSPL
Sbjct: 15 QVLRDTFGYQQFRPGQQEIINATLAGQDCLVVMPTGGGKSLCYQIPALVTDGLTLVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+ L+S+QT + + + + SG+ ++LLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLAYGVGAGCLNSSQTREQQLAVMDGCRSGQ--IKLLYIAPERLVMESFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
+L + L+A+DEAHCIS WGHDFRP YR L L+ PD+P++ALTATA
Sbjct: 133 DQLHQWRP----GLLAVDEAHCISQWGHDFRPEYRALGQLKQRFPDLPVIALTATADEAT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
+ D++ L L PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RGDIVRLLNLDQPLIQVSSFDRPNIRYTLVEKFKPL-----DQLWRFVQDQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + G+S AAYHAGL+++ R+ V + + QVVVATVAFGMGI++
Sbjct: 244 NSRAKVEDTTARLQSRGLSVAAYHAGLDNERRAQVQEAFQRDDLQVVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L Y D + L + + Q
Sbjct: 304 NVRFVVHFDIPRTIESYYQETGRAGRDGLPAEAMLLYDPADMAWLRRCLEEKPAGAQQDI 363
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 364 ---ERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|242022338|ref|XP_002431597.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
gi|212516905|gb|EEB18859.1| ATP-dependent DNA helicase Q1, putative [Pediculus humanus
corporis]
Length = 652
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 169/398 (42%), Positives = 230/398 (57%), Gaps = 19/398 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
LL+ +F ++FR QL+ I A LS D +MPTGGGKS+CYQ+PAL GI LVVSPL+
Sbjct: 73 LLKENFKISEFRPFQLEVINATLSKEDVILIMPTGGGKSLCYQLPALVDKGITLVVSPLV 132
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFM 147
+LME+QV+ LK+ LS+ + + + L P +L+YVTPE L + FM
Sbjct: 133 SLMEDQVMALKKINYPALMLSANSSKEDVKLVTAALQDSCPKHKLIYVTPEKLAKSKRFM 192
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K H +G +AIDE HC S+WGHDFRP Y L L++ P VP+L LTAT+ KV
Sbjct: 193 SQLQKCHQQGRFTRLAIDEVHCCSTWGHDFRPDYNYLGILKDMFPGVPLLGLTATSTSKV 252
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYC 265
DV + L +Q LV+K++FNRPNL+YEV K DL N + I+Y
Sbjct: 253 TADVQKMLNIQGCLVIKATFNRPNLYYEVVLKPSSQSENLDLLENWLKNKFSNKSGIIYT 312
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
C+EL+ L GI YHA L+ + RS + W+S+ QV+VATVAFGMGID+
Sbjct: 313 TAIKECEELTKELRKRGIKAGVYHAMLDAEVRSKMHTKWMSNEYQVIVATVAFGMGIDKP 372
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H ++ KSME FYQESGRAGRD S ++ + + D ++
Sbjct: 373 DVRFVIHHSLSKSMENFYQESGRAGRDGKNSHCIVMFRLADVFKL--------------- 417
Query: 386 STRERSSKKSISDFSQMVDYC-EGSGCRRKKILESFGE 422
ST + +K + + M+++C CRR I E F E
Sbjct: 418 STMVFTQQKGLENLYSMLNFCLNNDTCRRSLIAEHFDE 455
>gi|409124316|ref|ZP_11223711.1| ATP-dependent DNA helicase RecQ [Gillisia sp. CBA3202]
Length = 731
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/401 (41%), Positives = 239/401 (59%), Gaps = 28/401 (6%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89
L+ +FG +QF+ Q I+++++ + F +MPTGGGKS+CYQ+PAL + G +VVSPLIA
Sbjct: 12 LKKYFGFSQFKGLQEQVIKSIVNKHNTFVIMPTGGGKSLCYQLPALIEEGTAIVVSPLIA 71
Query: 90 LMENQVIGLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
LM+NQV ++ E GIA SS ++K ++ ED+ +G +LLYV PE
Sbjct: 72 LMKNQVDAIRGISSEHGIAHVLNSSLNKSEIK-QVKEDITNG--ITKLLYVAPESLTKEE 128
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAA 204
+ L+ + ++ +A+DEAHCIS WGHDFRP YR L + + D +PI+ LTATA
Sbjct: 129 NVEFLRGVE----ISFMAVDEAHCISEWGHDFRPEYRNLKHIIKRIGDNIPIIGLTATAT 184
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264
PKVQ+D++++L + + K+SFNRPNL+YE+R K + +D+ +K N I+Y
Sbjct: 185 PKVQEDILKNLGITDAKTFKASFNRPNLYYEIRPK--TKNVDSDIIRFVKQNEGKSGIIY 242
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R +EL+ L GI YHAGL+ K R D +I VVVAT+AFGMGID+
Sbjct: 243 CLSRKRVEELAQVLQVNGIKAVPYHAGLDAKTRIKHQDMFIMEDIDVVVATIAFGMGIDK 302
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H +IPKS+E++YQE+GRAGRD L YY D ++E
Sbjct: 303 PDVRFVIHNDIPKSLESYYQETGRAGRDGGEGHCLAYYAYKDIEKLE------------K 350
Query: 385 FSTRERSSKKSISD--FSQMVDYCEGSGCRRKKILESFGEQ 423
F + + +++ I ++V Y E S RRK +L FGE
Sbjct: 351 FMSGKPVAEQEIGHALLQEVVGYAETSMSRRKFLLHYFGEH 391
>gi|322514973|ref|ZP_08067985.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
gi|322119026|gb|EFX91190.1| ATP-dependent helicase RecQ [Actinobacillus ureae ATCC 25976]
Length = 602
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 242/389 (62%), Gaps = 18/389 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I +VL+GRDC +M TGGGKS+CYQ+PAL GI LV+SPLI+LM++
Sbjct: 16 FGYQSFRHGQQEVIDSVLAGRDCLVIMTTGGGKSLCYQVPALCLDGITLVISPLISLMKD 75
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153
QV L G+ FL+STQT + + + + SG+ L+LLY++PE T GF +
Sbjct: 76 QVDQLLTNGVEAGFLNSTQTFEEQQDVEQKALSGQ--LKLLYLSPEKVMTQGFF----RF 129
Query: 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
S ++L+A+DEAHC+S WGHDFR Y L +LRN P+VP++ALTATA P + D+++
Sbjct: 130 ISLCKISLIAVDEAHCVSQWGHDFRSEYTLLGNLRNTFPNVPLMALTATADPTTRHDILQ 189
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDE 273
L L +P SF+RPN+ Y V+ K + A S K +G + IVYC R +E
Sbjct: 190 HLRLTDPHTYLGSFDRPNIRYTVQEKFKPMEQLAKFIS--KQHGKS-GIVYCNSRKKVEE 246
Query: 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333
++ L+A IS YHAG++ + R +V + + QVVVAT+AFGMGI++ +VR V HF
Sbjct: 247 ITEKLAARKISVMGYHAGMSVQQRETVQNAFQRDNIQVVVATIAFGMGINKSNVRFVVHF 306
Query: 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK 393
++P+S+E++YQE+GRAGRD LPS+++L+Y D ++ +L + +++R K
Sbjct: 307 DLPRSIESYYQETGRAGRDDLPSEAVLFYDPADYAWLQKVLLEEP-------ESKQRDIK 359
Query: 394 KSISDFSQMVDYCEGSGCRRKKILESFGE 422
+ + + E CRR +L FGE
Sbjct: 360 Q--HKLQAIGAFAESQTCRRLVLLNYFGE 386
>gi|421724743|ref|ZP_16163951.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
gi|410374417|gb|EKP29090.1| ATP-dependent DNA helicase RecQ [Klebsiella oxytoca M5al]
Length = 608
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 167/404 (41%), Positives = 247/404 (61%), Gaps = 25/404 (6%)
Query: 23 KEALVK-LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
+E+L K +L+ FG+ QFR Q I L+GRDC +MPTGGGKS+CYQ+PAL G+
Sbjct: 9 QESLAKQVLQETFGYQQFRPGQDTIIDTALAGRDCLVVMPTGGGKSLCYQVPALVLGGLT 68
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
+VVSPLI+LM++QV L G+A L+STQ+ + + ++ SG+ +RLLY+ PE
Sbjct: 69 VVVSPLISLMKDQVDQLLANGVAAACLNSTQSREQQQEVMAGCRSGQ--IRLLYIAPERL 126
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
F+ L + L++VA+DEAHCIS WGHDFRP Y L LR +P +P +ALTA
Sbjct: 127 MLDNFLEHLTHWN----LSMVAVDEAHCISQWGHDFRPEYAALGQLRQRIPHIPFMALTA 182
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-- 259
TA ++D++ L L +PL+ SSF+RPN+ Y +L + + L +++ D
Sbjct: 183 TADDTTRRDIVRLLDLNDPLIQVSSFDRPNIRY------MLMEKFKPLDQLMRYVQDQRG 236
Query: 260 -CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
I+YC R+ ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAF
Sbjct: 237 KSGIIYCNSRSKVEDTAARLQSRGISAAAYHAGLENHIRADVQEKFQRDDLQIVVATVAF 296
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGI++ +VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ +
Sbjct: 297 GMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLE 353
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
K + ER ++ F+ E CRR +L FGE
Sbjct: 354 EKPAGPLQDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|424818190|ref|ZP_18243341.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
gi|325499210|gb|EGC97069.1| ATP-dependent DNA helicase RecQ [Escherichia fergusonii ECD227]
Length = 609
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIINTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 391
>gi|168052509|ref|XP_001778692.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669907|gb|EDQ56485.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 521
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 244/402 (60%), Gaps = 20/402 (4%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SGRD F LMPTGGGKS+ YQ+PA+ G+ LVVSPL++L+ +
Sbjct: 10 FGNKSFRLNQREIINATMSGRDVFVLMPTGGGKSLTYQLPAICSAGVTLVVSPLVSLIMD 69
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKK 152
Q++ L E I +LS T Q + +I +LD+G +LLYVTPE A +S+ L
Sbjct: 70 QIMHLSEANIPAAYLSGTMEWQEQNEILRNLDAG--VYKLLYVTPEKIARSDRLSQHLTS 127
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++ + LL + +DEAHC+S WGHDFRP Y+ L + PDVP++ALTATA V++DV+
Sbjct: 128 LYDQRLLARIVVDEAHCVSQWGHDFRPDYQNLGVFKERFPDVPLIALTATATLSVKEDVV 187
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT 270
+L L ++ + +FNRPNL YEV + K L+D + + + + I+YCL R+
Sbjct: 188 RALKLTRCIIFRQTFNRPNLRYEVLPKSKKCLEDIDK---FIRERHPNESGIIYCLSRSD 244
Query: 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330
C++++ L G A YH ++ RS V W ++ ATVAFGMGI++ DVR V
Sbjct: 245 CEKVTEKLREFGHKVAFYHGQMDPDERSYVQRMWSKDEVNIICATVAFGMGINKPDVRFV 304
Query: 331 CHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS---------KN 381
H ++PKS+E ++QESGRAGRD LP+ +LYY D R++ +L++ + +N
Sbjct: 305 IHHSLPKSLEGYHQESGRAGRDNLPASCILYYTYADSIRLKHMLTQGAAELGSTGSSFRN 364
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGE 422
+ ++ + S+ ++ + ++M+ YC+ CRR L FGE
Sbjct: 365 HNTVTSNQLST--NLDNLNRMIGYCQNDIDCRRSLQLAHFGE 404
>gi|319790871|ref|YP_004152511.1| ATP-dependent DNA helicase recq [Variovorax paradoxus EPS]
gi|315593334|gb|ADU34400.1| ATP-dependent DNA helicase RecQ [Variovorax paradoxus EPS]
Length = 631
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 237/414 (57%), Gaps = 34/414 (8%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKP----GIVL 82
++L FG++QFR Q D + V+ G D LMPTGGGKS+CYQIPA+A+ G+ +
Sbjct: 19 AEILHEVFGYSQFRGAQQDIVDHVVGGGDALVLMPTGGGKSLCYQIPAIARQRAGRGVAV 78
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSST----QTMQVKTKIYEDLDSGKPSLRLLYVTP 138
VVSPLIALM +QV L E G+ FL+ST QT V+ ++ + + LLY P
Sbjct: 79 VVSPLIALMHDQVGALHEAGVNAAFLNSTLDWEQTQDVERRML------RGEITLLYAAP 132
Query: 139 ELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198
E TP F+S+L + RG L+L AIDEAHC+S WGHDFRP YR L+ L P VP +A
Sbjct: 133 ERVNTPRFLSQLDSLKERGKLSLFAIDEAHCVSQWGHDFRPEYRALTVLHERYPGVPRIA 192
Query: 199 LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVL--KAN 256
LTATA + D++E L L+ SSF+RPN+ Y + K DA L + +
Sbjct: 193 LTATADDLTRADIVERLQLEEARQFVSSFDRPNIRYTIVEK---KDATTQLLRFIEREHE 249
Query: 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316
GD +VYC R ++L+ L GI+ YHAGL+ R D ++ V+VAT+
Sbjct: 250 GD-AGVVYCQSRKRVEDLATTLQGAGINALPYHAGLDAAVRQKHQDRFLREEGIVMVATI 308
Query: 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD---RRRMEFI 373
AFGMGID+ DVR V H ++PK++E +YQE+GRAGRD P+ + + YG++D +RRM
Sbjct: 309 AFGMGIDKPDVRFVGHLDMPKNIEGYYQETGRAGRDGAPADAWMTYGLNDVVNQRRM--- 365
Query: 374 LSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++S + F R ++ E S CRR ++L FGE+ C
Sbjct: 366 --IDESPAGEEFKQVMRGK------LDALLSLAEASDCRRVRLLGYFGEKSTPC 411
>gi|407721377|ref|YP_006841039.1| ATP-dependent DNA helicase recQ [Sinorhizobium meliloti Rm41]
gi|407319609|emb|CCM68213.1| ATP-dependent DNA helicase recQ [Sinorhizobium meliloti Rm41]
Length = 639
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/426 (41%), Positives = 237/426 (55%), Gaps = 26/426 (6%)
Query: 3 KSPLAMQSTSQTQKNKPLHEKEAL---VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCL 59
++P S ++ L E E + + LL+ +G++ FR +Q + V++G D L
Sbjct: 11 RAPDESDSMPESHNTGRLFETEGVSNPLDLLKRIYGYSTFRGQQQAVVDHVVAGGDAVVL 70
Query: 60 MPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTK 119
PTG GKS+C+QIPAL + G+ +VVSPLIALM +QV LK+ GI L+S+ T
Sbjct: 71 FPTGAGKSLCFQIPALCRRGVGIVVSPLIALMRDQVEALKQLGIRAAALNSSLTRDEAIA 130
Query: 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179
+ L + L LLYVTPE T GF + + L AIDEAHC+S WGHDFRP
Sbjct: 131 VRRALS--RDELDLLYVTPERAVTDGFAEMIADAD----IALFAIDEAHCVSQWGHDFRP 184
Query: 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK 239
YR L L P VP +ALTATA P + D++E L L V SSF+RPN+ YE+ +
Sbjct: 185 EYRGLGCLAERFPGVPRIALTATADPHTRDDMIERLGLGGARVFASSFDRPNIAYEIVER 244
Query: 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299
D L L D IVYCL R ++ + +L A GI YHAG+ AR +
Sbjct: 245 D---QPRQQLLRFLSRFKDASGIVYCLSRAKVEDTAEWLDAQGIRALPYHAGMERAARDA 301
Query: 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359
D ++ +VATVAFGMGID+ DVR V H ++P S+EA+YQE+GRAGRD LPS+
Sbjct: 302 HQDAFLKEENLCLVATVAFGMGIDKPDVRYVAHLDLPGSVEAYYQETGRAGRDGLPSEVW 361
Query: 360 LYYGMDD---RRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKI 416
+ YGM D RRRM ++ + ER+ S ++ CE +GCRR+ I
Sbjct: 362 MAYGMADVIQRRRM-----IDEGGAPEEIKRIERAKLNS------LLAICETAGCRRQAI 410
Query: 417 LESFGE 422
L FGE
Sbjct: 411 LAHFGE 416
>gi|387015566|gb|AFJ49902.1| ATP-dependent DNA helicase Q1 [Crotalus adamanteus]
Length = 652
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/398 (40%), Positives = 230/398 (57%), Gaps = 19/398 (4%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ FG FR QL+ I A ++GRD F +MPTGGGKS+CYQ+PA PG LV+ PLI
Sbjct: 82 VLQKSFGLQNFRPLQLETINATMAGRDVFLVMPTGGGKSLCYQLPAEGSPGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ L++ G++ L+++ + + ++ ++ S L+LLYVTPE A + FM
Sbjct: 142 SLMEDQLMMLEQLGVSATLLNASSSKEHVKWVHAEMLSRNSQLKLLYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
SKL+K + G L +A+DE HC S WGHDFRP Y+ L L+ P+ P++ LTATA V
Sbjct: 202 SKLEKAYQTGQLTRIAVDEVHCCSQWGHDFRPDYKLLGILKRQFPNAPLIGLTATATGHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN-GDTCAIVYC 265
+D LC+ ++ +SFNRPNL+YEVR K + D+ ++ I+YC
Sbjct: 262 LRDAQNILCVPKCIIFTASFNRPNLYYEVRQKPSSAQNCIEDIVKLINGRYKGLSGIIYC 321
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
+ ++++ L GI YHA + K +S V W ++ QVVVATVAFGMGID+
Sbjct: 322 FSQKDAEQVTMSLQKLGIKAGTYHANMEPKDKSRVHKRWCANEIQVVVATVAFGMGIDKP 381
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
DVR V H ++ KSME +YQESGRAGRD + +LYYG D R+ ++ + +
Sbjct: 382 DVRFVIHHSMSKSMENYYQESGRAGRDDQRADCILYYGFGDIFRISTMVVMENVGQQKLY 441
Query: 386 STRERSSKKSISDFSQMVDYCEGSG-CRRKKILESFGE 422
MV YC G CRR +I F E
Sbjct: 442 G---------------MVSYCHDMGRCRRVQIAHHFDE 464
>gi|30064881|ref|NP_839052.1| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 2457T]
gi|56480445|ref|NP_709628.2| ATP-dependent DNA helicase RecQ [Shigella flexneri 2a str. 301]
gi|384545430|ref|YP_005729494.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
gi|30043141|gb|AAP18863.1| ATP-dependent DNA helicase [Shigella flexneri 2a str. 2457T]
gi|56383996|gb|AAN45335.2| ATP-dependent DNA helicase [Shigella flexneri 2a str. 301]
gi|281603217|gb|ADA76201.1| ATP-dependent DNA helicase [Shigella flexneri 2002017]
Length = 611
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSRGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
>gi|410995826|gb|AFV97291.1| hypothetical protein B649_04885 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 602
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/401 (41%), Positives = 240/401 (59%), Gaps = 19/401 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ FG + FR+ Q DA+ A+LS RD L+PTGGGKS+CYQ+P L GI +VVSPL
Sbjct: 10 KVLKHTFGFSSFREMQEDAVDAILSRRDLAMLLPTGGGKSLCYQLPTLLMDGITIVVSPL 69
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
IALM +QVI LKE GI E +SS+Q+ Q + + + +G L+LLY+ PE A F+
Sbjct: 70 IALMHDQVIALKELGIEAEMISSSQSPQEQQEAFSKAKNG--VLKLLYIAPERLANVSFL 127
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S L+ + +N IDEAHCIS WGH+FR YR+L LR+ P PI A TATA PKV
Sbjct: 128 SWLETLD----INFFVIDEAHCISEWGHEFRDDYRRLGELRSAFPHTPIAAFTATATPKV 183
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
++D++ L L +PL+L++ R N+ VR +D +L ++LK + IVY
Sbjct: 184 REDILSQLGLNDPLILRAPVLRKNIKITVRERD--GGWRNELMNILKEHEGESGIVYAFS 241
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
R +EL+ +LS GI C AYHAG++ R +++ Q++VATVAFGMGID+ D+
Sbjct: 242 RKETEELAEFLSKKGIKCLAYHAGMSGSIRHDTHTSFLNDETQIIVATVAFGMGIDKGDI 301
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY-GMDDRRRMEFILSKNQSKNSQSFS 386
R V H ++PK++E +YQE GRAGRD + S+++L+Y G D + I + + +
Sbjct: 302 RFVIHTSLPKTIENYYQEIGRAGRDGIDSEAILFYSGTDFYNKKRLIDEGSDPQYREMIL 361
Query: 387 TRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGC 427
++ R+S +DY CR + I F + + C
Sbjct: 362 SKLRAS----------MDYATAEECRHRLIASYFSDTIAPC 392
>gi|331685543|ref|ZP_08386127.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
gi|331077244|gb|EGI48458.1| ATP-dependent DNA helicase RecQ [Escherichia coli H299]
Length = 611
Score = 311 bits (797), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 166/397 (41%), Positives = 240/397 (60%), Gaps = 22/397 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 17 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 76
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 77 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 134
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 135 EHLAHWNPV----LLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 190
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 191 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 245
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 246 NSRAKVEDTAARLQSKGISAAAYHAGLENDVRADVQEKFQRDDLQIVVATVAFGMGINKP 305
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 306 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 362
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE 422
ER ++ F+ E CRR +L FGE
Sbjct: 363 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGE 393
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,787,779,901
Number of Sequences: 23463169
Number of extensions: 277246846
Number of successful extensions: 747996
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 26539
Number of HSP's successfully gapped in prelim test: 3948
Number of HSP's that attempted gapping in prelim test: 678646
Number of HSP's gapped (non-prelim): 42395
length of query: 457
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 311
effective length of database: 8,933,572,693
effective search space: 2778341107523
effective search space used: 2778341107523
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)