Query 012728
Match_columns 457
No_of_seqs 249 out of 2694
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 05:41:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012728.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012728hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03137 ATP-dependent DNA hel 100.0 2E-69 4.3E-74 554.8 46.4 412 16-429 436-860 (1195)
2 COG0514 RecQ Superfamily II DN 100.0 2.9E-69 6.2E-74 525.1 38.9 389 25-428 4-393 (590)
3 TIGR00614 recQ_fam ATP-depende 100.0 5.3E-66 1.2E-70 513.8 45.4 381 29-425 2-384 (470)
4 PRK11057 ATP-dependent DNA hel 100.0 1.6E-65 3.4E-70 523.0 46.9 394 18-429 5-398 (607)
5 KOG0352 ATP-dependent DNA heli 100.0 1.4E-66 3E-71 471.3 28.2 432 24-456 5-454 (641)
6 TIGR01389 recQ ATP-dependent D 100.0 3E-64 6.6E-69 515.5 45.7 382 27-425 2-383 (591)
7 KOG0351 ATP-dependent DNA heli 100.0 1.1E-59 2.3E-64 483.7 34.5 397 24-428 250-651 (941)
8 KOG0330 ATP-dependent RNA heli 100.0 1.5E-59 3.2E-64 421.4 26.8 355 8-383 54-425 (476)
9 KOG0353 ATP-dependent DNA heli 100.0 4.9E-58 1.1E-62 410.4 30.6 416 15-445 71-545 (695)
10 KOG0331 ATP-dependent RNA heli 100.0 2.6E-58 5.6E-63 440.3 26.3 346 14-380 90-463 (519)
11 PRK04837 ATP-dependent RNA hel 100.0 1E-55 2.2E-60 436.1 33.0 344 14-378 7-375 (423)
12 KOG0328 Predicted ATP-dependen 100.0 7.1E-56 1.5E-60 381.5 27.1 349 9-377 21-385 (400)
13 COG0513 SrmB Superfamily II DN 100.0 4.7E-55 1E-59 436.0 36.2 346 15-380 29-396 (513)
14 PTZ00110 helicase; Provisional 100.0 9E-55 2E-59 438.1 35.0 347 13-379 128-498 (545)
15 PRK11776 ATP-dependent RNA hel 100.0 2.3E-54 4.9E-59 431.1 36.6 344 15-379 4-363 (460)
16 PRK10590 ATP-dependent RNA hel 100.0 4.6E-54 9.9E-59 427.0 36.5 343 16-379 2-366 (456)
17 PRK11634 ATP-dependent RNA hel 100.0 1.1E-53 2.3E-58 433.7 39.3 347 13-380 4-367 (629)
18 PRK04537 ATP-dependent RNA hel 100.0 2.5E-54 5.5E-59 436.2 34.2 345 15-378 9-377 (572)
19 PLN00206 DEAD-box ATP-dependen 100.0 4.9E-54 1.1E-58 431.7 34.3 347 12-379 118-489 (518)
20 KOG0338 ATP-dependent RNA heli 100.0 2.4E-55 5.2E-60 406.3 22.2 343 14-377 180-545 (691)
21 PRK11192 ATP-dependent RNA hel 100.0 1.8E-53 3.8E-58 422.2 34.8 341 16-375 2-362 (434)
22 KOG0345 ATP-dependent RNA heli 100.0 3.5E-53 7.6E-58 388.9 32.2 340 16-377 5-376 (567)
23 PRK01297 ATP-dependent RNA hel 100.0 7.6E-53 1.6E-57 421.2 37.6 350 9-378 81-455 (475)
24 KOG0333 U5 snRNP-like RNA heli 100.0 1.8E-53 3.8E-58 395.4 30.2 344 11-375 241-634 (673)
25 KOG0340 ATP-dependent RNA heli 100.0 5.5E-54 1.2E-58 381.2 25.4 351 13-382 5-378 (442)
26 KOG0342 ATP-dependent RNA heli 100.0 8.8E-54 1.9E-58 395.5 27.4 345 11-375 78-447 (543)
27 KOG0336 ATP-dependent RNA heli 100.0 8.8E-53 1.9E-57 379.6 23.3 347 14-379 218-586 (629)
28 KOG0343 RNA Helicase [RNA proc 100.0 2.2E-52 4.9E-57 390.0 26.3 343 12-376 66-434 (758)
29 PTZ00424 helicase 45; Provisio 100.0 1.3E-51 2.7E-56 406.1 32.3 344 14-377 27-386 (401)
30 KOG0326 ATP-dependent RNA heli 100.0 6.2E-53 1.3E-57 369.3 17.0 350 12-384 82-448 (459)
31 KOG0348 ATP-dependent RNA heli 100.0 6E-52 1.3E-56 385.9 23.4 354 11-377 132-566 (708)
32 TIGR03817 DECH_helic helicase/ 100.0 1E-49 2.2E-54 412.5 35.0 343 19-373 18-396 (742)
33 KOG0346 RNA helicase [RNA proc 100.0 2.4E-50 5.3E-55 367.1 25.0 341 14-374 18-419 (569)
34 KOG0335 ATP-dependent RNA heli 100.0 2.9E-49 6.3E-54 371.7 22.9 345 16-377 75-456 (482)
35 KOG0332 ATP-dependent RNA heli 100.0 2E-48 4.2E-53 347.9 24.3 353 11-380 86-459 (477)
36 KOG0347 RNA helicase [RNA proc 100.0 3.4E-48 7.3E-53 362.0 26.1 355 14-384 180-589 (731)
37 KOG0341 DEAD-box protein abstr 100.0 6.6E-49 1.4E-53 352.3 13.9 335 12-368 167-531 (610)
38 KOG0339 ATP-dependent RNA heli 100.0 8.8E-46 1.9E-50 342.6 28.4 353 9-380 217-590 (731)
39 PRK02362 ski2-like helicase; P 100.0 2.9E-44 6.2E-49 376.0 33.5 328 16-365 2-397 (737)
40 KOG0327 Translation initiation 100.0 2.7E-45 5.8E-50 330.6 20.9 346 12-379 23-384 (397)
41 KOG0350 DEAD-box ATP-dependent 100.0 1.6E-44 3.5E-49 334.0 24.2 354 13-380 125-555 (620)
42 KOG0334 RNA helicase [RNA proc 100.0 2E-44 4.3E-49 361.9 26.8 350 12-380 362-735 (997)
43 KOG4284 DEAD box protein [Tran 100.0 3.6E-45 7.8E-50 347.1 20.2 343 11-373 21-388 (980)
44 TIGR00580 mfd transcription-re 100.0 1.2E-42 2.6E-47 363.0 38.6 332 19-376 433-787 (926)
45 PRK13767 ATP-dependent helicas 100.0 1.2E-42 2.5E-47 367.0 35.6 320 22-363 18-396 (876)
46 KOG0344 ATP-dependent RNA heli 100.0 1.4E-43 3E-48 335.4 23.6 344 20-379 141-509 (593)
47 KOG0337 ATP-dependent RNA heli 100.0 3.9E-44 8.5E-49 325.0 17.6 347 14-378 20-381 (529)
48 PRK10917 ATP-dependent DNA hel 100.0 1.7E-41 3.7E-46 350.1 37.6 316 23-363 247-587 (681)
49 COG1201 Lhr Lhr-like helicases 100.0 1.9E-41 4E-46 342.4 33.1 324 21-364 7-361 (814)
50 PRK00254 ski2-like helicase; P 100.0 1.4E-41 3.1E-46 354.8 32.5 330 16-374 2-398 (720)
51 TIGR00643 recG ATP-dependent D 100.0 1.1E-40 2.4E-45 341.9 37.3 314 24-362 222-563 (630)
52 PRK10689 transcription-repair 100.0 1.4E-40 2.9E-45 354.8 38.2 319 20-364 583-918 (1147)
53 PRK01172 ski2-like helicase; P 100.0 4.5E-41 9.7E-46 349.7 30.2 335 16-375 2-389 (674)
54 COG1111 MPH1 ERCC4-like helica 100.0 1.5E-38 3.3E-43 296.8 33.9 316 36-369 13-485 (542)
55 PRK14701 reverse gyrase; Provi 100.0 3.1E-38 6.8E-43 344.0 32.5 333 23-376 65-467 (1638)
56 TIGR02621 cas3_GSU0051 CRISPR- 100.0 3.4E-38 7.5E-43 320.5 29.9 317 25-362 3-388 (844)
57 COG1202 Superfamily II helicas 100.0 5.7E-38 1.2E-42 295.2 23.6 333 15-364 194-552 (830)
58 PRK09751 putative ATP-dependen 100.0 2.3E-37 5E-42 331.6 28.5 287 58-363 1-383 (1490)
59 PRK09401 reverse gyrase; Revie 100.0 1.8E-36 3.8E-41 324.0 31.7 307 25-351 68-430 (1176)
60 PHA02653 RNA helicase NPH-II; 100.0 4.7E-36 1E-40 303.5 32.4 301 41-373 167-522 (675)
61 TIGR01587 cas3_core CRISPR-ass 100.0 2E-36 4.3E-41 293.4 25.2 299 55-365 1-336 (358)
62 TIGR03158 cas3_cyano CRISPR-as 100.0 1.8E-35 4E-40 283.5 29.3 299 42-350 1-357 (357)
63 PHA02558 uvsW UvsW helicase; P 100.0 4.2E-36 9.2E-41 300.7 25.4 296 37-362 113-449 (501)
64 KOG0354 DEAD-box like helicase 100.0 1E-35 2.2E-40 293.8 22.3 321 35-371 59-535 (746)
65 COG1204 Superfamily II helicas 100.0 6.5E-35 1.4E-39 299.0 27.9 320 20-362 14-405 (766)
66 COG1205 Distinct helicase fami 100.0 1.6E-34 3.5E-39 300.2 29.6 335 22-365 55-422 (851)
67 PRK12898 secA preprotein trans 100.0 1.4E-33 3.1E-38 281.0 35.1 322 28-366 94-587 (656)
68 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.7E-34 5.8E-39 297.5 30.7 303 42-369 6-340 (819)
69 TIGR00603 rad25 DNA repair hel 100.0 2E-34 4.4E-39 290.3 28.6 305 38-368 255-610 (732)
70 PRK11664 ATP-dependent RNA hel 100.0 2.6E-34 5.5E-39 298.4 28.8 295 44-368 11-342 (812)
71 PRK13766 Hef nuclease; Provisi 100.0 2.3E-33 4.9E-38 297.4 35.7 315 36-367 13-481 (773)
72 KOG0952 DNA/RNA helicase MER3/ 100.0 8.5E-34 1.8E-38 283.4 28.9 340 31-386 103-512 (1230)
73 PRK09200 preprotein translocas 100.0 1E-32 2.2E-37 280.6 37.1 323 27-366 68-542 (790)
74 TIGR03714 secA2 accessory Sec 100.0 1.1E-32 2.4E-37 277.7 35.5 319 38-366 68-538 (762)
75 COG1200 RecG RecG-like helicas 100.0 3.6E-32 7.9E-37 264.9 34.0 325 17-366 242-592 (677)
76 TIGR01054 rgy reverse gyrase. 100.0 2.4E-32 5.2E-37 292.8 32.1 293 24-337 65-409 (1171)
77 PRK04914 ATP-dependent helicas 100.0 4.3E-32 9.4E-37 282.7 32.3 315 38-363 152-601 (956)
78 KOG0329 ATP-dependent RNA heli 100.0 2.2E-34 4.7E-39 245.4 11.1 298 14-366 41-356 (387)
79 TIGR00963 secA preprotein tran 100.0 2.3E-31 4.9E-36 266.6 34.6 322 28-366 47-518 (745)
80 PRK05580 primosome assembly pr 100.0 2.3E-31 4.9E-36 273.8 35.2 311 38-366 144-550 (679)
81 COG1061 SSL2 DNA or RNA helica 100.0 7.4E-32 1.6E-36 264.9 26.6 294 37-357 35-382 (442)
82 COG1197 Mfd Transcription-repa 100.0 9.9E-31 2.2E-35 268.5 35.0 328 12-365 569-913 (1139)
83 TIGR00595 priA primosomal prot 100.0 8E-31 1.7E-35 260.5 27.7 286 57-362 1-378 (505)
84 KOG0951 RNA helicase BRR2, DEA 100.0 1.3E-30 2.8E-35 264.0 25.1 335 33-384 304-721 (1674)
85 PRK11131 ATP-dependent RNA hel 100.0 2.4E-30 5.1E-35 273.3 26.6 296 42-369 78-415 (1294)
86 KOG0349 Putative DEAD-box RNA 100.0 4.8E-31 1E-35 240.7 15.5 285 78-376 286-626 (725)
87 PRK09694 helicase Cas3; Provis 100.0 2E-28 4.3E-33 253.9 26.9 311 34-354 282-664 (878)
88 TIGR01967 DEAH_box_HrpA ATP-de 100.0 3E-28 6.6E-33 258.4 25.6 298 44-369 73-408 (1283)
89 PRK12906 secA preprotein trans 100.0 3.1E-26 6.6E-31 231.8 32.8 324 26-366 69-554 (796)
90 KOG0947 Cytoplasmic exosomal R 100.0 7.4E-27 1.6E-31 231.6 26.2 318 32-375 292-735 (1248)
91 COG4098 comFA Superfamily II D 100.0 7.2E-26 1.6E-30 201.7 28.4 297 38-366 97-417 (441)
92 PLN03142 Probable chromatin-re 100.0 1.5E-26 3.3E-31 242.1 26.2 309 38-361 169-593 (1033)
93 PRK11448 hsdR type I restricti 100.0 2.3E-26 4.9E-31 245.3 27.5 304 38-353 413-801 (1123)
94 PRK12904 preprotein translocas 99.9 7.8E-25 1.7E-29 222.6 34.3 321 29-366 73-574 (830)
95 PRK13104 secA preprotein trans 99.9 7.8E-25 1.7E-29 222.8 32.6 312 34-366 79-588 (896)
96 KOG0950 DNA polymerase theta/e 99.9 3.8E-26 8.2E-31 228.0 21.3 340 21-380 207-626 (1008)
97 COG4581 Superfamily II RNA hel 99.9 1.9E-25 4.2E-30 229.7 22.6 307 33-361 115-533 (1041)
98 KOG0948 Nuclear exosomal RNA h 99.9 7.5E-26 1.6E-30 219.3 14.3 314 33-376 125-551 (1041)
99 COG1203 CRISPR-associated heli 99.9 3.4E-24 7.3E-29 223.0 23.2 312 39-365 196-550 (733)
100 COG1198 PriA Primosomal protei 99.9 3.1E-23 6.7E-28 209.2 28.6 322 38-374 198-612 (730)
101 PRK13107 preprotein translocas 99.9 1.4E-22 3E-27 205.8 32.3 317 33-366 78-592 (908)
102 PRK12899 secA preprotein trans 99.9 4.2E-22 9.2E-27 202.6 33.3 121 243-366 551-682 (970)
103 COG1110 Reverse gyrase [DNA re 99.9 6.7E-23 1.4E-27 206.0 26.7 292 24-337 69-417 (1187)
104 cd00268 DEADc DEAD-box helicas 99.9 4.7E-23 1E-27 183.5 20.5 182 17-215 1-196 (203)
105 TIGR00631 uvrb excinuclease AB 99.9 7.3E-22 1.6E-26 201.2 31.2 130 244-374 426-562 (655)
106 KOG0385 Chromatin remodeling c 99.9 9.7E-23 2.1E-27 198.6 21.5 314 37-365 166-599 (971)
107 COG1643 HrpA HrpA-like helicas 99.9 2E-22 4.4E-27 206.3 23.8 302 41-368 53-390 (845)
108 KOG0922 DEAH-box RNA helicase 99.9 1.8E-22 3.9E-27 195.5 18.1 302 44-370 57-395 (674)
109 PRK05298 excinuclease ABC subu 99.9 2.8E-20 6.1E-25 191.1 33.5 118 246-364 432-556 (652)
110 KOG0949 Predicted helicase, DE 99.9 1.4E-21 3.1E-26 194.7 22.4 323 39-377 512-1058(1330)
111 PRK12900 secA preprotein trans 99.9 8.1E-21 1.8E-25 193.8 26.6 121 244-366 582-712 (1025)
112 KOG0387 Transcription-coupled 99.9 4.3E-21 9.4E-26 188.1 20.9 310 38-361 205-652 (923)
113 COG0556 UvrB Helicase subunit 99.9 4.1E-20 8.9E-25 174.2 25.5 163 194-364 387-556 (663)
114 TIGR00348 hsdR type I site-spe 99.9 9.7E-20 2.1E-24 187.8 28.2 296 39-352 239-634 (667)
115 TIGR01407 dinG_rel DnaQ family 99.9 3.4E-19 7.5E-24 189.5 32.3 180 195-378 597-829 (850)
116 PRK12326 preprotein translocas 99.9 1.3E-18 2.9E-23 173.0 33.8 321 28-366 69-548 (764)
117 COG4096 HsdR Type I site-speci 99.9 1.9E-21 4.1E-26 192.8 13.1 325 5-352 129-525 (875)
118 PF00270 DEAD: DEAD/DEAH box h 99.9 1.4E-20 3.1E-25 162.4 16.2 155 40-207 1-166 (169)
119 KOG0923 mRNA splicing factor A 99.9 7E-20 1.5E-24 176.1 21.9 315 27-366 254-607 (902)
120 KOG0390 DNA repair protein, SN 99.9 1.9E-19 4.1E-24 180.8 24.8 325 38-376 238-720 (776)
121 KOG0389 SNF2 family DNA-depend 99.8 8E-20 1.7E-24 179.1 20.5 321 35-367 397-890 (941)
122 KOG0384 Chromodomain-helicase 99.8 1E-19 2.2E-24 185.9 21.2 315 37-365 369-811 (1373)
123 KOG0924 mRNA splicing factor A 99.8 1.1E-19 2.3E-24 175.3 16.3 304 39-365 357-697 (1042)
124 PRK13103 secA preprotein trans 99.8 1.5E-17 3.2E-22 169.6 31.2 316 33-366 78-592 (913)
125 KOG4150 Predicted ATP-dependen 99.8 2.6E-19 5.6E-24 169.4 16.5 343 22-371 270-648 (1034)
126 KOG1123 RNA polymerase II tran 99.8 1.5E-19 3.3E-24 168.7 13.7 307 37-371 301-659 (776)
127 PRK07246 bifunctional ATP-depe 99.8 2.2E-17 4.7E-22 173.4 29.4 181 195-378 575-798 (820)
128 KOG0926 DEAH-box RNA helicase 99.8 7.6E-19 1.6E-23 172.2 16.1 302 45-365 263-704 (1172)
129 cd00079 HELICc Helicase superf 99.8 1E-18 2.2E-23 143.9 14.2 118 244-361 12-131 (131)
130 KOG0920 ATP-dependent RNA heli 99.8 2.9E-18 6.3E-23 175.3 19.9 311 38-369 173-548 (924)
131 PRK12903 secA preprotein trans 99.8 1.2E-16 2.7E-21 161.3 31.3 321 28-366 69-540 (925)
132 PF00271 Helicase_C: Helicase 99.8 3.6E-19 7.7E-24 132.2 9.0 78 276-353 1-78 (78)
133 KOG0953 Mitochondrial RNA heli 99.8 9.8E-18 2.1E-22 158.7 20.3 355 53-450 191-588 (700)
134 KOG0925 mRNA splicing factor A 99.8 7.3E-17 1.6E-21 150.5 21.5 321 11-365 21-387 (699)
135 KOG0392 SNF2 family DNA-depend 99.8 4.1E-17 8.8E-22 166.6 19.8 310 38-365 975-1454(1549)
136 CHL00122 secA preprotein trans 99.8 1.9E-15 4.2E-20 153.7 31.4 280 28-325 67-491 (870)
137 KOG0951 RNA helicase BRR2, DEA 99.8 5.8E-17 1.2E-21 165.9 19.5 381 39-455 1144-1587(1674)
138 PRK08074 bifunctional ATP-depe 99.7 3E-15 6.5E-20 160.2 30.1 184 195-378 674-908 (928)
139 KOG1000 Chromatin remodeling p 99.7 1.2E-16 2.7E-21 149.3 16.1 306 37-361 197-597 (689)
140 PRK12902 secA preprotein trans 99.7 3.2E-14 6.9E-19 144.7 33.0 275 33-325 81-506 (939)
141 TIGR03117 cas_csf4 CRISPR-asso 99.7 3.2E-14 7E-19 143.2 29.5 168 195-365 373-616 (636)
142 PRK14873 primosome assembly pr 99.7 2.4E-14 5.2E-19 146.1 28.3 285 58-374 165-547 (665)
143 KOG0386 Chromatin remodeling c 99.7 1.9E-16 4.2E-21 159.2 12.0 310 38-363 394-834 (1157)
144 smart00487 DEXDc DEAD-like hel 99.7 1.2E-15 2.6E-20 134.9 15.4 165 34-215 4-182 (201)
145 COG4889 Predicted helicase [Ge 99.7 6.1E-16 1.3E-20 153.3 13.4 309 37-353 160-573 (1518)
146 smart00490 HELICc helicase sup 99.7 3.7E-16 8.1E-21 117.1 9.3 81 273-353 2-82 (82)
147 PRK11747 dinG ATP-dependent DN 99.6 3.7E-13 7.9E-18 139.9 30.1 164 196-365 459-674 (697)
148 PF04851 ResIII: Type III rest 99.6 1.6E-15 3.4E-20 132.7 10.0 158 38-204 3-183 (184)
149 KOG0388 SNF2 family DNA-depend 99.6 1.3E-14 2.9E-19 141.0 16.3 104 257-360 1043-1147(1185)
150 COG1199 DinG Rad3-related DNA 99.6 1.4E-13 3.1E-18 143.9 25.5 165 196-364 406-616 (654)
151 KOG0391 SNF2 family DNA-depend 99.6 4.6E-14 1E-18 143.5 19.3 135 245-379 1261-1399(1958)
152 TIGR00604 rad3 DNA repair heli 99.6 8.7E-13 1.9E-17 138.1 28.7 69 33-101 5-83 (705)
153 KOG1002 Nucleotide excision re 99.6 1.2E-13 2.5E-18 129.5 18.8 108 258-365 638-749 (791)
154 PRK12901 secA preprotein trans 99.6 6E-13 1.3E-17 136.9 24.6 121 244-366 612-742 (1112)
155 TIGR02562 cas3_yersinia CRISPR 99.5 4.7E-12 1E-16 131.0 22.7 107 261-370 759-899 (1110)
156 cd00046 DEXDc DEAD-like helica 99.4 1.2E-12 2.7E-17 108.7 12.2 135 54-203 1-144 (144)
157 KOG4439 RNA polymerase II tran 99.4 1.7E-11 3.7E-16 119.8 17.9 103 258-360 746-851 (901)
158 COG0553 HepA Superfamily II DN 99.3 1.2E-10 2.6E-15 126.6 21.1 117 245-361 693-816 (866)
159 KOG1015 Transcription regulato 99.3 4.9E-11 1.1E-15 119.9 15.8 113 249-361 1131-1271(1567)
160 PF06862 DUF1253: Protein of u 99.2 1.5E-08 3.3E-13 97.6 28.4 237 137-376 132-426 (442)
161 PF02399 Herpes_ori_bp: Origin 99.2 1.5E-09 3.3E-14 110.0 20.4 281 55-365 51-388 (824)
162 PF07652 Flavi_DEAD: Flaviviru 99.2 1.7E-11 3.7E-16 98.3 5.3 133 52-207 3-140 (148)
163 COG0653 SecA Preprotein transl 99.2 2E-08 4.3E-13 102.7 26.5 318 38-366 78-546 (822)
164 COG0610 Type I site-specific r 99.1 2.6E-08 5.5E-13 106.8 25.9 282 54-352 274-636 (962)
165 PF00176 SNF2_N: SNF2 family N 99.1 8.5E-10 1.8E-14 104.3 11.5 156 42-215 1-184 (299)
166 KOG2340 Uncharacterized conser 98.6 1.2E-06 2.6E-11 84.0 15.7 117 258-374 552-677 (698)
167 PF07517 SecA_DEAD: SecA DEAD- 98.6 2.7E-07 5.8E-12 83.8 10.7 132 29-171 69-210 (266)
168 KOG1016 Predicted DNA helicase 98.6 2.4E-05 5.3E-10 78.3 23.3 121 258-378 719-864 (1387)
169 KOG0921 Dosage compensation co 98.6 2.1E-07 4.6E-12 94.0 9.0 301 42-365 382-774 (1282)
170 smart00488 DEXDc2 DEAD-like he 98.5 6.9E-07 1.5E-11 83.3 11.0 68 34-102 5-85 (289)
171 smart00489 DEXDc3 DEAD-like he 98.5 6.9E-07 1.5E-11 83.3 11.0 68 34-102 5-85 (289)
172 TIGR00596 rad1 DNA repair prot 98.5 5.2E-06 1.1E-10 87.0 18.4 79 131-218 8-92 (814)
173 PF13307 Helicase_C_2: Helicas 98.5 3.1E-07 6.8E-12 78.4 7.9 112 250-364 2-149 (167)
174 PF13872 AAA_34: P-loop contai 98.4 3.4E-06 7.3E-11 76.9 11.4 164 38-208 37-225 (303)
175 PRK15483 type III restriction- 98.3 7.6E-06 1.6E-10 86.1 14.1 72 308-379 501-582 (986)
176 PF13604 AAA_30: AAA domain; P 98.1 1.5E-05 3.3E-10 70.0 8.0 60 38-97 1-65 (196)
177 KOG0952 DNA/RNA helicase MER3/ 98.0 2.3E-06 5E-11 88.4 1.8 250 38-308 927-1205(1230)
178 PF02562 PhoH: PhoH-like prote 97.9 1.6E-05 3.4E-10 69.4 5.6 55 36-90 2-61 (205)
179 COG3587 Restriction endonuclea 97.9 0.00051 1.1E-08 70.3 15.9 74 307-380 482-568 (985)
180 KOG1802 RNA helicase nonsense 97.9 0.00012 2.5E-09 72.6 11.0 80 29-109 402-485 (935)
181 KOG1001 Helicase-like transcri 97.9 4.4E-05 9.4E-10 78.5 8.2 102 259-360 540-643 (674)
182 KOG1803 DNA helicase [Replicat 97.8 9.2E-05 2E-09 72.8 9.7 62 38-99 185-250 (649)
183 PF13086 AAA_11: AAA domain; P 97.8 4E-05 8.7E-10 69.4 6.9 63 38-100 1-75 (236)
184 PF12340 DUF3638: Protein of u 97.8 0.00047 1E-08 60.8 12.9 81 15-100 3-91 (229)
185 PF13245 AAA_19: Part of AAA d 97.7 9.4E-05 2E-09 53.7 6.0 53 46-98 2-62 (76)
186 TIGR01448 recD_rel helicase, p 97.7 0.00037 8E-09 73.4 12.8 63 30-93 316-383 (720)
187 KOG1805 DNA replication helica 97.7 0.00042 9.2E-09 71.7 12.2 141 19-172 655-810 (1100)
188 PRK10875 recD exonuclease V su 97.7 0.00074 1.6E-08 69.3 14.0 76 24-99 137-220 (615)
189 smart00492 HELICc3 helicase su 97.7 0.00044 9.6E-09 56.9 10.2 77 287-363 26-136 (141)
190 PRK10536 hypothetical protein; 97.7 0.00072 1.6E-08 60.8 11.9 56 35-90 56-116 (262)
191 smart00491 HELICc2 helicase su 97.6 0.00043 9.4E-09 57.1 9.2 68 296-363 32-137 (142)
192 PF09848 DUF2075: Uncharacteri 97.6 0.00024 5.2E-09 68.6 8.7 46 55-100 3-53 (352)
193 TIGR01447 recD exodeoxyribonuc 97.6 0.00083 1.8E-08 68.7 12.4 61 40-100 147-215 (586)
194 KOG0383 Predicted helicase [Ge 97.5 2.7E-05 5.9E-10 79.1 1.0 64 257-321 630-696 (696)
195 PRK08181 transposase; Validate 97.4 0.0015 3.2E-08 60.1 10.9 55 39-94 88-149 (269)
196 PF13401 AAA_22: AAA domain; P 97.3 0.00076 1.6E-08 54.9 6.8 19 53-71 4-22 (131)
197 TIGR00376 DNA helicase, putati 97.3 0.0012 2.5E-08 68.6 9.3 71 37-107 156-230 (637)
198 COG1875 NYN ribonuclease and A 97.3 0.00068 1.5E-08 63.1 6.6 61 31-91 221-289 (436)
199 COG2256 MGS1 ATPase related to 97.3 0.0014 3.1E-08 61.8 8.7 36 54-89 49-84 (436)
200 PRK12723 flagellar biosynthesi 97.2 0.0085 1.8E-07 58.0 14.3 56 157-216 253-310 (388)
201 PRK06526 transposase; Provisio 97.2 0.0012 2.7E-08 60.2 8.1 45 48-93 93-140 (254)
202 KOG1132 Helicase of the DEAD s 97.2 0.0011 2.3E-08 68.3 7.7 68 34-102 18-134 (945)
203 PRK04296 thymidine kinase; Pro 97.1 0.001 2.2E-08 58.2 6.3 32 55-86 4-38 (190)
204 cd00009 AAA The AAA+ (ATPases 97.1 0.0054 1.2E-07 50.5 10.2 19 53-71 19-37 (151)
205 PF00580 UvrD-helicase: UvrD/R 97.1 0.00077 1.7E-08 64.0 5.4 60 39-100 1-67 (315)
206 PF13871 Helicase_C_4: Helicas 97.1 0.002 4.3E-08 58.8 7.6 58 299-356 52-117 (278)
207 PF05970 PIF1: PIF1-like helic 97.0 0.0018 3.8E-08 62.8 7.5 55 38-92 1-64 (364)
208 PRK12377 putative replication 96.9 0.014 3E-07 53.0 11.4 41 54-94 102-144 (248)
209 PRK06921 hypothetical protein; 96.9 0.017 3.7E-07 53.2 12.2 40 53-93 117-160 (266)
210 KOG0989 Replication factor C, 96.9 0.0039 8.5E-08 56.8 7.5 34 42-75 40-79 (346)
211 TIGR02768 TraA_Ti Ti-type conj 96.9 0.0059 1.3E-07 64.7 10.2 56 38-93 352-411 (744)
212 PRK08727 hypothetical protein; 96.9 0.0079 1.7E-07 54.4 9.6 32 54-85 42-76 (233)
213 PRK05973 replicative DNA helic 96.8 0.023 4.9E-07 51.1 12.2 86 16-104 19-117 (237)
214 cd01124 KaiC KaiC is a circadi 96.8 0.0091 2E-07 51.9 9.5 48 56-104 2-52 (187)
215 PRK14956 DNA polymerase III su 96.8 0.016 3.4E-07 57.3 11.5 20 55-74 42-61 (484)
216 PF05621 TniB: Bacterial TniB 96.8 0.0099 2.1E-07 54.8 9.4 44 54-97 62-115 (302)
217 smart00382 AAA ATPases associa 96.7 0.0038 8.2E-08 51.0 6.0 38 53-90 2-42 (148)
218 PRK06835 DNA replication prote 96.7 0.026 5.7E-07 53.5 12.1 40 53-93 183-225 (329)
219 PF00448 SRP54: SRP54-type pro 96.7 0.04 8.6E-07 48.2 12.4 125 56-214 4-136 (196)
220 PRK06893 DNA replication initi 96.6 0.011 2.3E-07 53.4 8.8 47 158-208 91-139 (229)
221 PLN03025 replication factor C 96.6 0.019 4.2E-07 54.6 10.9 43 158-206 99-141 (319)
222 PF01695 IstB_IS21: IstB-like 96.6 0.0025 5.5E-08 54.9 4.4 41 52-93 46-89 (178)
223 PRK08116 hypothetical protein; 96.6 0.04 8.7E-07 50.9 12.3 38 55-93 116-156 (268)
224 cd01122 GP4d_helicase GP4d_hel 96.6 0.017 3.6E-07 53.7 9.9 39 48-86 25-67 (271)
225 PRK13889 conjugal transfer rel 96.6 0.018 3.8E-07 62.3 11.1 58 35-93 344-405 (988)
226 PRK11889 flhF flagellar biosyn 96.5 0.078 1.7E-06 51.0 14.0 55 158-216 320-375 (436)
227 PRK07952 DNA replication prote 96.5 0.051 1.1E-06 49.2 12.2 39 54-93 100-141 (244)
228 PRK05703 flhF flagellar biosyn 96.5 0.17 3.8E-06 49.9 16.8 55 158-216 299-355 (424)
229 PRK14974 cell division protein 96.5 0.1 2.3E-06 49.6 14.6 50 158-211 222-272 (336)
230 COG1222 RPT1 ATP-dependent 26S 96.5 0.025 5.3E-07 52.9 9.9 76 13-92 146-223 (406)
231 PRK13342 recombination factor 96.5 0.017 3.6E-07 57.2 9.6 19 54-72 37-55 (413)
232 KOG1133 Helicase of the DEAD s 96.5 0.056 1.2E-06 54.6 12.9 116 244-363 612-778 (821)
233 PF05496 RuvB_N: Holliday junc 96.4 0.0069 1.5E-07 53.3 5.8 22 55-76 52-73 (233)
234 PRK08084 DNA replication initi 96.4 0.024 5.3E-07 51.3 9.4 17 54-70 46-62 (235)
235 COG1484 DnaC DNA replication p 96.4 0.013 2.9E-07 53.5 7.7 65 34-99 79-153 (254)
236 cd01120 RecA-like_NTPases RecA 96.4 0.048 1E-06 45.9 10.8 34 56-89 2-38 (165)
237 PRK05707 DNA polymerase III su 96.3 0.033 7.1E-07 53.0 10.4 34 38-71 3-40 (328)
238 PRK06645 DNA polymerase III su 96.3 0.066 1.4E-06 53.9 13.0 54 4-73 7-63 (507)
239 TIGR02760 TraI_TIGR conjugativ 96.3 0.25 5.5E-06 58.0 19.1 58 38-95 429-491 (1960)
240 KOG2028 ATPase related to the 96.3 0.022 4.7E-07 53.3 8.4 40 54-93 163-205 (554)
241 PTZ00112 origin recognition co 96.3 0.081 1.7E-06 55.8 13.3 31 40-70 760-798 (1164)
242 PF13173 AAA_14: AAA domain 96.3 0.023 5E-07 46.0 7.8 36 159-201 62-97 (128)
243 PRK13341 recombination factor 96.2 0.033 7.2E-07 58.6 10.8 38 159-205 110-147 (725)
244 COG1419 FlhF Flagellar GTP-bin 96.2 0.17 3.7E-06 48.6 14.5 127 53-218 203-338 (407)
245 COG1474 CDC6 Cdc6-related prot 96.2 0.11 2.5E-06 50.1 13.6 17 54-70 43-59 (366)
246 PRK14722 flhF flagellar biosyn 96.2 0.29 6.4E-06 47.2 16.0 54 157-214 214-268 (374)
247 PRK08769 DNA polymerase III su 96.2 0.066 1.4E-06 50.5 11.3 34 37-70 3-43 (319)
248 KOG0739 AAA+-type ATPase [Post 96.1 0.072 1.6E-06 48.5 10.8 48 48-96 156-208 (439)
249 PRK14949 DNA polymerase III su 96.1 0.041 8.8E-07 58.3 10.6 44 157-206 118-161 (944)
250 PF00004 AAA: ATPase family as 96.1 0.022 4.7E-07 46.1 7.2 31 56-86 1-31 (132)
251 PRK13826 Dtr system oriT relax 96.1 0.033 7.2E-07 60.7 10.2 56 38-93 381-440 (1102)
252 PRK12323 DNA polymerase III su 96.1 0.034 7.3E-07 56.9 9.6 46 156-207 122-167 (700)
253 TIGR02881 spore_V_K stage V sp 96.0 0.055 1.2E-06 49.9 10.0 18 54-71 43-60 (261)
254 PRK12727 flagellar biosynthesi 96.0 0.44 9.5E-06 47.9 16.6 53 157-213 427-479 (559)
255 PRK14958 DNA polymerase III su 96.0 0.054 1.2E-06 54.8 10.7 38 157-200 118-156 (509)
256 PRK07003 DNA polymerase III su 96.0 0.029 6.2E-07 58.3 8.5 41 157-203 118-158 (830)
257 PRK09183 transposase/IS protei 96.0 0.084 1.8E-06 48.5 10.9 43 50-93 99-144 (259)
258 PRK05642 DNA replication initi 95.9 0.047 1E-06 49.4 9.0 44 159-206 98-142 (234)
259 PRK14964 DNA polymerase III su 95.9 0.062 1.3E-06 53.7 10.4 46 156-207 114-159 (491)
260 PRK12724 flagellar biosynthesi 95.9 0.27 5.9E-06 47.9 14.4 56 157-216 298-357 (432)
261 PRK12422 chromosomal replicati 95.9 0.081 1.8E-06 52.6 11.2 39 54-93 142-183 (445)
262 PRK07994 DNA polymerase III su 95.9 0.071 1.5E-06 55.1 11.0 41 156-202 117-157 (647)
263 PHA02544 44 clamp loader, smal 95.9 0.074 1.6E-06 50.6 10.7 40 159-203 101-140 (316)
264 PRK08533 flagellar accessory p 95.9 0.12 2.6E-06 46.6 11.4 51 52-103 23-76 (230)
265 PRK14960 DNA polymerase III su 95.9 0.047 1E-06 55.9 9.6 41 157-203 117-157 (702)
266 PRK00149 dnaA chromosomal repl 95.9 0.072 1.6E-06 53.4 10.8 17 54-70 149-165 (450)
267 PHA02533 17 large terminase pr 95.8 0.041 8.8E-07 55.9 8.9 63 38-100 59-126 (534)
268 PRK14712 conjugal transfer nic 95.7 0.053 1.2E-06 61.2 10.0 57 38-94 835-900 (1623)
269 PRK14959 DNA polymerase III su 95.7 0.1 2.3E-06 53.5 11.3 20 54-73 39-58 (624)
270 COG1110 Reverse gyrase [DNA re 95.7 0.047 1E-06 57.7 8.9 90 245-334 112-211 (1187)
271 PF03354 Terminase_1: Phage Te 95.7 0.067 1.5E-06 54.0 10.0 61 41-101 1-77 (477)
272 COG1223 Predicted ATPase (AAA+ 95.7 0.099 2.1E-06 46.8 9.5 39 54-93 152-190 (368)
273 PRK14962 DNA polymerase III su 95.7 0.089 1.9E-06 52.7 10.5 18 55-72 38-55 (472)
274 PRK10917 ATP-dependent DNA hel 95.7 0.03 6.6E-07 59.0 7.5 76 257-332 309-389 (681)
275 TIGR02928 orc1/cdc6 family rep 95.7 0.11 2.5E-06 50.4 11.2 17 54-70 41-57 (365)
276 TIGR02760 TraI_TIGR conjugativ 95.7 0.051 1.1E-06 63.6 9.9 57 37-93 1018-1083(1960)
277 PRK14951 DNA polymerase III su 95.7 0.08 1.7E-06 54.5 10.2 45 156-206 122-166 (618)
278 PRK06731 flhF flagellar biosyn 95.6 0.51 1.1E-05 43.5 14.4 56 157-216 153-209 (270)
279 PRK05986 cob(I)alamin adenolsy 95.6 0.069 1.5E-06 46.0 8.2 137 52-207 21-161 (191)
280 TIGR03600 phage_DnaB phage rep 95.6 0.14 3E-06 50.9 11.7 34 52-85 193-230 (421)
281 PF00308 Bac_DnaA: Bacterial d 95.6 0.07 1.5E-06 47.7 8.6 45 158-206 97-143 (219)
282 PRK07133 DNA polymerase III su 95.6 0.056 1.2E-06 56.3 8.9 56 1-72 1-59 (725)
283 PRK08691 DNA polymerase III su 95.6 0.16 3.5E-06 52.6 12.0 20 54-73 39-58 (709)
284 PRK08903 DnaA regulatory inact 95.6 0.099 2.1E-06 47.0 9.7 18 53-70 42-59 (227)
285 cd00984 DnaB_C DnaB helicase C 95.6 0.1 2.3E-06 47.4 9.9 35 52-86 12-50 (242)
286 KOG0991 Replication factor C, 95.6 0.038 8.1E-07 48.5 6.3 18 54-71 49-66 (333)
287 PRK06871 DNA polymerase III su 95.5 0.13 2.8E-06 48.7 10.4 33 39-71 3-42 (325)
288 PRK07764 DNA polymerase III su 95.5 0.11 2.4E-06 55.5 11.0 43 157-205 119-161 (824)
289 PRK04195 replication factor C 95.5 0.14 3.1E-06 51.7 11.3 20 53-72 39-58 (482)
290 PRK05580 primosome assembly pr 95.5 0.093 2E-06 55.3 10.2 76 258-334 190-266 (679)
291 PRK14961 DNA polymerase III su 95.4 0.092 2E-06 51.0 9.5 18 55-72 40-57 (363)
292 PRK13709 conjugal transfer nic 95.4 0.06 1.3E-06 61.6 9.2 56 38-93 967-1031(1747)
293 KOG0741 AAA+-type ATPase [Post 95.4 0.12 2.7E-06 50.8 10.0 34 55-88 540-574 (744)
294 TIGR00362 DnaA chromosomal rep 95.4 0.11 2.4E-06 51.3 10.2 16 55-70 138-153 (405)
295 TIGR00595 priA primosomal prot 95.4 0.093 2E-06 53.1 9.7 77 257-334 24-101 (505)
296 TIGR01241 FtsH_fam ATP-depende 95.4 0.11 2.4E-06 52.7 10.3 56 13-71 50-106 (495)
297 PRK06904 replicative DNA helic 95.4 0.42 9.1E-06 48.0 14.1 147 52-201 220-382 (472)
298 KOG1513 Nuclear helicase MOP-3 95.4 0.019 4.1E-07 58.6 4.4 166 37-204 263-455 (1300)
299 cd01126 TraG_VirD4 The TraG/Tr 95.4 0.016 3.5E-07 56.7 4.0 57 55-111 1-58 (384)
300 PRK10919 ATP-dependent DNA hel 95.3 0.028 6.1E-07 59.1 5.9 62 38-101 2-70 (672)
301 PRK00411 cdc6 cell division co 95.3 0.26 5.6E-06 48.5 12.4 17 54-70 56-72 (394)
302 PRK14873 primosome assembly pr 95.3 0.15 3.3E-06 53.1 10.9 90 244-334 172-265 (665)
303 PRK14952 DNA polymerase III su 95.3 0.26 5.6E-06 50.6 12.3 44 156-205 116-159 (584)
304 TIGR02655 circ_KaiC circadian 95.2 0.056 1.2E-06 54.6 7.4 102 52-171 262-366 (484)
305 KOG0734 AAA+-type ATPase conta 95.2 0.15 3.3E-06 50.2 9.8 63 147-209 385-453 (752)
306 PRK05563 DNA polymerase III su 95.2 0.15 3.3E-06 52.3 10.4 19 54-72 39-57 (559)
307 PRK06964 DNA polymerase III su 95.1 0.2 4.4E-06 47.8 10.5 33 39-71 2-39 (342)
308 PF06745 KaiC: KaiC; InterPro 95.1 0.042 9.1E-07 49.4 5.7 51 52-103 18-72 (226)
309 PRK06067 flagellar accessory p 95.1 0.84 1.8E-05 41.2 14.1 52 52-104 24-78 (234)
310 PRK11034 clpA ATP-dependent Cl 95.0 0.22 4.8E-06 52.8 11.4 19 53-71 207-225 (758)
311 KOG0738 AAA+-type ATPase [Post 95.0 0.14 3E-06 48.5 8.6 60 11-70 179-262 (491)
312 PTZ00454 26S protease regulato 95.0 0.22 4.8E-06 48.7 10.6 20 53-72 179-198 (398)
313 CHL00176 ftsH cell division pr 95.0 0.39 8.5E-06 50.0 12.9 18 54-71 217-234 (638)
314 PRK06090 DNA polymerase III su 95.0 0.22 4.8E-06 47.0 10.2 34 38-71 3-43 (319)
315 TIGR02639 ClpA ATP-dependent C 95.0 0.2 4.4E-06 53.4 11.1 17 54-70 204-220 (731)
316 PRK14957 DNA polymerase III su 95.0 0.14 3.1E-06 52.0 9.4 39 156-200 117-156 (546)
317 PRK14088 dnaA chromosomal repl 95.0 0.34 7.3E-06 48.3 12.0 17 54-70 131-147 (440)
318 TIGR00708 cobA cob(I)alamin ad 95.0 0.13 2.8E-06 43.7 7.6 53 151-206 90-142 (173)
319 TIGR03420 DnaA_homol_Hda DnaA 95.0 0.13 2.8E-06 46.1 8.4 18 53-70 38-55 (226)
320 TIGR01075 uvrD DNA helicase II 94.9 0.037 8E-07 58.9 5.4 63 37-101 3-72 (715)
321 PRK14948 DNA polymerase III su 94.9 0.21 4.6E-06 51.8 10.6 19 54-72 39-57 (620)
322 TIGR00643 recG ATP-dependent D 94.9 0.065 1.4E-06 56.1 7.0 76 257-332 283-363 (630)
323 PRK08939 primosomal protein Dn 94.9 0.16 3.4E-06 47.9 8.9 18 53-70 156-173 (306)
324 KOG0729 26S proteasome regulat 94.9 1.4 3E-05 39.8 14.0 78 13-93 172-250 (435)
325 TIGR01243 CDC48 AAA family ATP 94.9 0.15 3.2E-06 54.5 9.7 20 52-71 211-230 (733)
326 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.19 4E-06 45.6 9.1 52 52-104 20-74 (237)
327 PRK14953 DNA polymerase III su 94.8 0.32 7E-06 49.0 11.5 18 56-73 41-58 (486)
328 PRK09111 DNA polymerase III su 94.8 0.32 7E-06 50.2 11.7 20 54-73 47-66 (598)
329 cd01121 Sms Sms (bacterial rad 94.8 0.28 6.1E-06 47.5 10.7 50 53-103 82-134 (372)
330 PRK14087 dnaA chromosomal repl 94.8 0.42 9.1E-06 47.7 12.2 44 54-98 142-190 (450)
331 PHA03333 putative ATPase subun 94.8 0.71 1.5E-05 47.6 13.6 55 46-100 180-238 (752)
332 KOG1133 Helicase of the DEAD s 94.8 0.037 8E-07 55.9 4.6 38 34-71 10-52 (821)
333 PRK08840 replicative DNA helic 94.8 0.51 1.1E-05 47.2 12.8 121 50-172 214-343 (464)
334 PRK11773 uvrD DNA-dependent he 94.8 0.044 9.6E-07 58.3 5.6 63 37-101 8-77 (721)
335 COG4962 CpaF Flp pilus assembl 94.8 0.081 1.8E-06 49.5 6.4 58 34-91 153-213 (355)
336 CHL00181 cbbX CbbX; Provisiona 94.7 0.42 9.2E-06 44.6 11.4 19 53-71 59-77 (287)
337 PRK03992 proteasome-activating 94.7 0.22 4.8E-06 48.8 9.9 18 54-71 166-183 (389)
338 PRK05896 DNA polymerase III su 94.7 0.35 7.5E-06 49.5 11.3 43 157-205 118-160 (605)
339 PRK14086 dnaA chromosomal repl 94.7 0.26 5.6E-06 50.5 10.4 41 55-96 316-361 (617)
340 TIGR01243 CDC48 AAA family ATP 94.7 0.28 6E-06 52.5 11.3 67 15-84 450-518 (733)
341 PF13177 DNA_pol3_delta2: DNA 94.7 0.33 7.1E-06 41.1 9.6 47 157-209 101-147 (162)
342 PF03796 DnaB_C: DnaB-like hel 94.7 0.2 4.4E-06 46.1 9.0 144 53-203 19-180 (259)
343 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.17 3.7E-06 42.4 7.6 54 151-207 88-142 (159)
344 PRK14963 DNA polymerase III su 94.6 0.29 6.3E-06 49.5 10.7 17 55-71 38-54 (504)
345 PRK05748 replicative DNA helic 94.6 0.22 4.8E-06 49.8 9.9 118 52-171 202-327 (448)
346 TIGR03015 pepcterm_ATPase puta 94.6 0.22 4.7E-06 46.1 9.2 32 40-71 25-61 (269)
347 PF02534 T4SS-DNA_transf: Type 94.6 0.03 6.5E-07 56.5 3.6 58 54-111 45-103 (469)
348 PRK08760 replicative DNA helic 94.6 0.34 7.3E-06 48.7 11.0 117 53-171 229-352 (476)
349 KOG0701 dsRNA-specific nucleas 94.6 0.026 5.7E-07 63.0 3.3 95 259-353 293-399 (1606)
350 COG1198 PriA Primosomal protei 94.6 0.12 2.7E-06 53.9 8.0 87 244-331 229-318 (730)
351 PRK07993 DNA polymerase III su 94.6 0.27 6E-06 46.9 9.9 33 39-71 3-42 (334)
352 PRK11054 helD DNA helicase IV; 94.6 0.11 2.3E-06 54.6 7.6 62 37-100 195-263 (684)
353 PRK12402 replication factor C 94.6 0.37 8.1E-06 46.2 11.0 17 55-71 38-54 (337)
354 PF05876 Terminase_GpA: Phage 94.6 0.16 3.4E-06 52.2 8.7 63 38-100 16-85 (557)
355 PHA02244 ATPase-like protein 94.6 0.38 8.1E-06 46.1 10.5 24 48-71 114-137 (383)
356 COG0464 SpoVK ATPases of the A 94.5 0.56 1.2E-05 47.7 12.6 39 54-93 277-315 (494)
357 KOG0733 Nuclear AAA ATPase (VC 94.5 0.39 8.4E-06 48.4 10.6 56 12-70 184-240 (802)
358 KOG0726 26S proteasome regulat 94.5 0.17 3.7E-06 46.1 7.5 127 16-192 183-317 (440)
359 PRK13897 type IV secretion sys 94.4 0.04 8.7E-07 56.6 4.1 58 54-111 159-217 (606)
360 PRK12726 flagellar biosynthesi 94.4 1.4 3E-05 42.5 14.0 53 157-213 284-337 (407)
361 PRK05636 replicative DNA helic 94.4 0.44 9.6E-06 48.2 11.3 115 54-172 266-389 (505)
362 PF13481 AAA_25: AAA domain; P 94.4 0.34 7.4E-06 42.2 9.5 112 52-173 31-156 (193)
363 TIGR03878 thermo_KaiC_2 KaiC d 94.4 0.18 3.9E-06 46.3 8.0 52 52-103 35-92 (259)
364 TIGR00678 holB DNA polymerase 94.4 0.62 1.4E-05 40.4 11.0 17 54-70 15-31 (188)
365 PRK14969 DNA polymerase III su 94.4 0.28 6E-06 50.0 9.9 18 55-72 40-57 (527)
366 KOG0298 DEAD box-containing he 94.3 0.041 8.9E-07 59.2 4.0 148 53-215 374-561 (1394)
367 PRK11823 DNA repair protein Ra 94.3 0.54 1.2E-05 46.9 11.6 50 53-103 80-132 (446)
368 PRK13833 conjugal transfer pro 94.3 0.13 2.7E-06 48.7 6.7 53 38-90 128-186 (323)
369 PRK05595 replicative DNA helic 94.3 0.27 5.9E-06 49.1 9.5 147 53-202 201-360 (444)
370 TIGR01074 rep ATP-dependent DN 94.2 0.081 1.8E-06 55.9 6.0 60 39-100 2-68 (664)
371 PRK14955 DNA polymerase III su 94.2 0.34 7.4E-06 47.6 9.9 18 55-72 40-57 (397)
372 TIGR02880 cbbX_cfxQ probable R 94.2 0.34 7.3E-06 45.2 9.4 17 54-70 59-75 (284)
373 TIGR00064 ftsY signal recognit 94.2 2.6 5.7E-05 39.0 15.1 51 157-211 153-210 (272)
374 PRK14965 DNA polymerase III su 94.2 0.33 7.1E-06 50.1 10.0 44 156-205 117-160 (576)
375 PRK10416 signal recognition pa 94.1 1.6 3.6E-05 41.3 13.9 53 157-213 195-254 (318)
376 PRK08006 replicative DNA helic 94.1 1 2.2E-05 45.2 13.1 148 52-201 223-384 (471)
377 COG2255 RuvB Holliday junction 94.1 0.11 2.4E-06 47.1 5.6 19 54-72 53-71 (332)
378 KOG0737 AAA+-type ATPase [Post 94.1 0.29 6.3E-06 46.2 8.5 66 11-76 85-150 (386)
379 PRK08699 DNA polymerase III su 94.0 0.35 7.6E-06 46.0 9.2 33 39-71 2-39 (325)
380 COG1444 Predicted P-loop ATPas 94.0 0.52 1.1E-05 49.2 10.9 77 20-97 197-280 (758)
381 TIGR00580 mfd transcription-re 93.9 0.16 3.4E-06 55.2 7.3 76 257-332 499-579 (926)
382 PRK06620 hypothetical protein; 93.9 0.28 6E-06 43.7 7.8 18 54-71 45-62 (214)
383 PRK00771 signal recognition pa 93.9 1.4 3.1E-05 43.6 13.3 48 159-210 176-224 (437)
384 KOG0736 Peroxisome assembly fa 93.8 0.97 2.1E-05 46.9 12.2 54 13-70 667-722 (953)
385 KOG0733 Nuclear AAA ATPase (VC 93.8 1.1 2.3E-05 45.4 12.1 58 12-70 505-562 (802)
386 PRK04328 hypothetical protein; 93.8 0.051 1.1E-06 49.7 3.1 51 52-103 22-75 (249)
387 PTZ00361 26 proteosome regulat 93.7 0.3 6.4E-06 48.3 8.4 20 53-72 217-236 (438)
388 PRK09165 replicative DNA helic 93.7 0.43 9.3E-06 48.3 9.7 118 53-172 217-355 (497)
389 TIGR00665 DnaB replicative DNA 93.7 0.5 1.1E-05 47.2 10.2 48 52-100 194-245 (434)
390 PRK09112 DNA polymerase III su 93.7 1.8 3.8E-05 41.7 13.4 39 156-200 139-178 (351)
391 COG2805 PilT Tfp pilus assembl 93.6 0.044 9.6E-07 50.1 2.2 23 55-77 127-151 (353)
392 PHA02542 41 41 helicase; Provi 93.6 0.89 1.9E-05 45.6 11.6 31 55-85 192-225 (473)
393 PRK13850 type IV secretion sys 93.6 0.079 1.7E-06 55.2 4.4 57 54-110 140-197 (670)
394 PRK10865 protein disaggregatio 93.6 0.55 1.2E-05 50.9 10.9 18 54-71 200-217 (857)
395 PRK14950 DNA polymerase III su 93.6 0.48 1E-05 49.1 10.0 18 55-72 40-57 (585)
396 PRK07940 DNA polymerase III su 93.6 1.2 2.5E-05 43.7 12.1 48 156-209 115-162 (394)
397 TIGR01425 SRP54_euk signal rec 93.5 2.9 6.4E-05 41.2 14.8 48 158-209 182-230 (429)
398 TIGR00635 ruvB Holliday juncti 93.5 0.31 6.6E-06 46.1 8.0 18 54-71 31-48 (305)
399 PF10593 Z1: Z1 domain; Inter 93.5 0.34 7.4E-06 43.8 7.8 90 282-376 110-204 (239)
400 PHA03368 DNA packaging termina 93.5 1.2 2.5E-05 45.9 12.1 76 22-101 227-307 (738)
401 TIGR01073 pcrA ATP-dependent D 93.5 0.12 2.5E-06 55.3 5.6 63 37-101 3-72 (726)
402 TIGR02785 addA_Gpos recombinat 93.5 0.14 3E-06 57.9 6.3 61 38-100 1-67 (1232)
403 COG0593 DnaA ATPase involved i 93.5 0.33 7.2E-06 47.1 8.0 15 54-68 114-128 (408)
404 PRK07004 replicative DNA helic 93.3 0.61 1.3E-05 46.7 10.0 119 52-172 212-338 (460)
405 CHL00195 ycf46 Ycf46; Provisio 93.3 0.39 8.5E-06 48.3 8.5 17 54-70 260-276 (489)
406 TIGR03499 FlhF flagellar biosy 93.3 0.48 1E-05 44.2 8.7 18 54-71 195-212 (282)
407 PRK13851 type IV secretion sys 93.2 0.15 3.3E-06 48.7 5.3 42 50-91 159-202 (344)
408 COG1200 RecG RecG-like helicas 93.2 0.41 8.8E-06 48.9 8.4 78 256-333 309-391 (677)
409 TIGR02782 TrbB_P P-type conjug 93.2 0.31 6.7E-06 45.8 7.3 53 38-90 116-174 (299)
410 PRK06995 flhF flagellar biosyn 93.1 2.1 4.5E-05 42.9 13.1 56 156-215 332-388 (484)
411 PRK10689 transcription-repair 93.1 0.25 5.3E-06 55.0 7.4 76 257-332 648-728 (1147)
412 KOG0742 AAA+-type ATPase [Post 93.1 0.55 1.2E-05 45.0 8.5 17 54-70 385-401 (630)
413 PRK14721 flhF flagellar biosyn 93.0 2.4 5.2E-05 41.7 13.2 57 156-216 267-324 (420)
414 COG1219 ClpX ATP-dependent pro 93.0 0.061 1.3E-06 49.5 2.1 18 54-71 98-115 (408)
415 PRK13894 conjugal transfer ATP 92.9 0.24 5.2E-06 46.9 6.2 52 39-90 133-190 (319)
416 PRK10867 signal recognition pa 92.9 2.9 6.3E-05 41.4 13.8 42 56-97 103-150 (433)
417 PRK00080 ruvB Holliday junctio 92.9 0.21 4.5E-06 47.8 5.9 18 54-71 52-69 (328)
418 TIGR01242 26Sp45 26S proteasom 92.9 0.2 4.2E-06 48.7 5.7 19 54-72 157-175 (364)
419 KOG2543 Origin recognition com 92.9 0.52 1.1E-05 44.7 8.1 49 39-87 10-64 (438)
420 COG3421 Uncharacterized protei 92.9 0.046 1E-06 54.3 1.3 53 295-352 315-384 (812)
421 PRK13822 conjugal transfer cou 92.9 0.14 3E-06 53.2 4.8 59 54-112 225-284 (641)
422 TIGR00959 ffh signal recogniti 92.8 4.6 0.0001 39.9 15.1 50 55-104 101-157 (428)
423 PRK06321 replicative DNA helic 92.8 0.91 2E-05 45.5 10.4 117 54-172 227-350 (472)
424 KOG0730 AAA+-type ATPase [Post 92.8 0.63 1.4E-05 47.3 9.0 55 13-70 429-485 (693)
425 PRK09376 rho transcription ter 92.8 0.61 1.3E-05 45.0 8.6 19 52-70 168-186 (416)
426 PRK14723 flhF flagellar biosyn 92.8 2.3 5.1E-05 44.9 13.5 54 158-215 263-317 (767)
427 TIGR02767 TraG-Ti Ti-type conj 92.7 0.17 3.6E-06 52.4 5.1 58 54-111 212-271 (623)
428 COG0470 HolB ATPase involved i 92.7 0.54 1.2E-05 44.7 8.4 41 157-203 108-148 (325)
429 TIGR03689 pup_AAA proteasome A 92.6 0.58 1.3E-05 47.1 8.7 18 53-70 216-233 (512)
430 PRK08506 replicative DNA helic 92.6 0.73 1.6E-05 46.4 9.5 118 53-172 192-316 (472)
431 COG2109 BtuR ATP:corrinoid ade 92.6 1.1 2.4E-05 38.2 8.9 56 151-209 115-170 (198)
432 COG3973 Superfamily I DNA and 92.6 0.55 1.2E-05 47.2 8.1 82 24-106 192-288 (747)
433 TIGR03346 chaperone_ClpB ATP-d 92.5 1 2.3E-05 48.9 11.1 18 54-71 195-212 (852)
434 TIGR03880 KaiC_arch_3 KaiC dom 92.4 0.93 2E-05 40.6 9.0 52 52-104 15-69 (224)
435 TIGR02640 gas_vesic_GvpN gas v 92.3 0.24 5.1E-06 45.7 5.2 39 46-84 14-52 (262)
436 cd01130 VirB11-like_ATPase Typ 92.2 0.36 7.8E-06 41.9 5.9 33 37-69 8-41 (186)
437 PF05127 Helicase_RecD: Helica 92.2 0.21 4.6E-06 42.6 4.3 42 57-98 1-46 (177)
438 COG0630 VirB11 Type IV secreto 92.2 1.3 2.9E-05 41.8 10.1 54 37-90 126-182 (312)
439 KOG0331 ATP-dependent RNA heli 92.2 1.2 2.5E-05 44.6 10.0 91 257-351 164-272 (519)
440 PRK00440 rfc replication facto 92.1 2.7 5.9E-05 39.8 12.4 16 55-70 40-55 (319)
441 COG3267 ExeA Type II secretory 92.1 1.4 3.1E-05 39.6 9.4 41 48-88 45-88 (269)
442 TIGR02397 dnaX_nterm DNA polym 92.1 1.7 3.7E-05 41.9 11.1 16 55-70 38-53 (355)
443 PRK06749 replicative DNA helic 92.0 1.6 3.5E-05 43.3 10.9 48 52-100 185-235 (428)
444 KOG1132 Helicase of the DEAD s 91.9 5.2 0.00011 42.3 14.4 140 195-337 482-656 (945)
445 COG2804 PulE Type II secretory 91.9 0.2 4.3E-06 49.4 4.3 31 39-69 242-274 (500)
446 COG4185 Uncharacterized protei 91.9 0.22 4.7E-06 41.2 3.8 37 56-93 5-41 (187)
447 PRK14970 DNA polymerase III su 91.9 1 2.2E-05 43.8 9.4 17 54-70 40-56 (367)
448 PRK14954 DNA polymerase III su 91.9 1 2.2E-05 46.7 9.6 18 55-72 40-57 (620)
449 PRK06305 DNA polymerase III su 91.8 1.8 4E-05 43.2 11.1 19 54-72 40-58 (451)
450 PRK06647 DNA polymerase III su 91.7 1.6 3.4E-05 44.9 10.7 18 55-72 40-57 (563)
451 TIGR02012 tigrfam_recA protein 91.7 0.89 1.9E-05 43.0 8.2 48 53-103 55-105 (321)
452 PRK09302 circadian clock prote 91.7 0.48 1E-05 48.3 7.1 52 52-104 272-326 (509)
453 PRK09354 recA recombinase A; P 91.7 0.87 1.9E-05 43.5 8.2 48 54-104 61-111 (349)
454 KOG0652 26S proteasome regulat 91.7 1.7 3.6E-05 39.1 9.3 17 54-70 206-222 (424)
455 KOG1513 Nuclear helicase MOP-3 91.6 0.28 6E-06 50.6 5.0 76 301-376 850-936 (1300)
456 KOG0740 AAA+-type ATPase [Post 91.6 1.2 2.7E-05 43.4 9.2 38 54-92 187-224 (428)
457 KOG0732 AAA+-type ATPase conta 91.6 0.65 1.4E-05 50.1 7.9 60 10-70 257-316 (1080)
458 PHA00350 putative assembly pro 91.5 0.92 2E-05 44.1 8.2 24 56-79 4-31 (399)
459 TIGR02237 recomb_radB DNA repa 91.5 1.3 2.8E-05 39.2 8.8 36 52-87 11-49 (209)
460 PRK13900 type IV secretion sys 91.4 0.29 6.4E-06 46.6 4.9 39 52-90 159-199 (332)
461 TIGR00767 rho transcription te 91.4 0.5 1.1E-05 45.7 6.4 20 52-71 167-186 (415)
462 TIGR03345 VI_ClpV1 type VI sec 91.4 1.5 3.3E-05 47.5 10.7 29 42-70 570-613 (852)
463 CHL00095 clpC Clp protease ATP 91.4 1 2.3E-05 48.7 9.5 18 54-71 201-218 (821)
464 COG1435 Tdk Thymidine kinase [ 91.3 0.35 7.5E-06 41.6 4.6 35 55-89 6-43 (201)
465 KOG1131 RNA polymerase II tran 91.3 0.87 1.9E-05 44.9 7.8 67 33-99 11-88 (755)
466 COG4626 Phage terminase-like p 91.3 1.3 2.7E-05 44.5 9.0 63 38-100 61-140 (546)
467 KOG0339 ATP-dependent RNA heli 91.2 1.8 4E-05 42.6 9.8 71 258-332 296-376 (731)
468 TIGR01420 pilT_fam pilus retra 91.2 1.2 2.5E-05 42.9 8.8 38 53-90 122-163 (343)
469 COG2909 MalT ATP-dependent tra 91.1 0.99 2.2E-05 47.4 8.4 41 160-205 131-172 (894)
470 PRK08058 DNA polymerase III su 91.1 2.7 5.8E-05 40.2 11.0 41 156-202 108-148 (329)
471 PRK07773 replicative DNA helic 91.0 1.2 2.6E-05 48.7 9.6 116 54-172 218-341 (886)
472 PRK14701 reverse gyrase; Provi 91.0 0.79 1.7E-05 52.9 8.4 61 257-317 121-187 (1638)
473 PRK08451 DNA polymerase III su 90.9 3.1 6.7E-05 42.3 11.7 40 157-202 116-155 (535)
474 PRK13876 conjugal transfer cou 90.8 0.2 4.4E-06 52.1 3.3 54 54-108 145-199 (663)
475 PF01443 Viral_helicase1: Vira 90.8 0.27 5.9E-06 44.3 3.8 22 312-333 184-205 (234)
476 PF02572 CobA_CobO_BtuR: ATP:c 90.7 3.2 6.8E-05 35.3 9.9 131 56-206 6-141 (172)
477 PRK14971 DNA polymerase III su 90.7 1.6 3.5E-05 45.4 9.7 43 155-203 118-160 (614)
478 cd00983 recA RecA is a bacter 90.7 0.85 1.8E-05 43.1 7.0 48 53-103 55-105 (325)
479 PRK10733 hflB ATP-dependent me 90.6 3.2 6.9E-05 43.6 12.0 31 54-84 186-216 (644)
480 KOG0741 AAA+-type ATPase [Post 90.6 0.55 1.2E-05 46.5 5.8 70 14-86 215-291 (744)
481 KOG2170 ATPase of the AAA+ sup 90.3 2.3 4.9E-05 39.3 9.1 50 158-213 178-235 (344)
482 KOG0727 26S proteasome regulat 90.2 3.2 6.8E-05 37.2 9.6 17 54-70 190-206 (408)
483 PF01745 IPT: Isopentenyl tran 90.2 0.3 6.5E-06 42.7 3.2 28 56-83 4-31 (233)
484 TIGR01547 phage_term_2 phage t 90.1 2.5 5.4E-05 41.6 10.3 44 56-99 4-54 (396)
485 COG0513 SrmB Superfamily II DN 90.1 1 2.2E-05 45.9 7.6 68 261-332 102-180 (513)
486 KOG0731 AAA+-type ATPase conta 90.1 4.2 9E-05 42.8 11.9 61 15-77 308-368 (774)
487 COG3598 RepA RecA-family ATPas 90.0 4.3 9.3E-05 37.9 10.6 145 42-204 77-243 (402)
488 PRK09087 hypothetical protein; 90.0 1.5 3.3E-05 39.3 7.9 17 54-70 45-61 (226)
489 PRK13880 conjugal transfer cou 90.0 0.27 5.8E-06 51.3 3.4 56 54-109 176-233 (636)
490 PRK07471 DNA polymerase III su 89.9 3.7 8E-05 39.8 10.9 40 157-202 140-179 (365)
491 PHA03372 DNA packaging termina 89.9 7.8 0.00017 39.6 13.1 155 22-207 175-341 (668)
492 PF00437 T2SE: Type II/IV secr 89.7 0.36 7.9E-06 44.7 3.8 39 52-90 126-167 (270)
493 TIGR00416 sms DNA repair prote 89.6 3.9 8.4E-05 40.9 11.1 50 53-103 94-146 (454)
494 cd01125 repA Hexameric Replica 89.6 5.1 0.00011 36.2 11.2 30 56-85 4-48 (239)
495 cd00268 DEADc DEAD-box helicas 89.6 1.9 4.2E-05 37.7 8.2 73 257-333 68-150 (203)
496 PF05729 NACHT: NACHT domain 89.6 2 4.4E-05 35.9 8.1 43 160-202 83-129 (166)
497 TIGR02639 ClpA ATP-dependent C 89.4 0.58 1.3E-05 50.0 5.5 17 55-71 486-502 (731)
498 cd01129 PulE-GspE PulE/GspE Th 89.3 0.9 2E-05 41.9 6.0 31 39-69 64-96 (264)
499 TIGR03819 heli_sec_ATPase heli 89.3 0.84 1.8E-05 43.7 5.9 52 39-90 163-217 (340)
500 cd03115 SRP The signal recogni 89.1 13 0.00028 31.5 15.0 16 56-71 3-18 (173)
No 1
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=2e-69 Score=554.80 Aligned_cols=412 Identities=41% Similarity=0.707 Sum_probs=358.1
Q ss_pred cCC--CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHH
Q 012728 16 KNK--PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 16 ~~~--~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q 93 (457)
.|+ .++....+...++..||+..|||+|.++|+.++.|+|+++++|||+|||++|++|++...+.+|||+|+++|+.+
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqD 515 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQD 515 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHH
Confidence 355 577788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchh-HHHHHhhhhcCCccEEEEeccccccc
Q 012728 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~-~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
|+..+...|+.+..+.+....................++++++||+.+..... ...+........+.+|||||||++++
T Consensus 516 QV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq 595 (1195)
T PLN03137 516 QIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ 595 (1195)
T ss_pred HHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh
Confidence 99999999999999988888777766666665534458999999998876543 33333333445589999999999999
Q ss_pred cCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHH
Q 012728 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSV 252 (457)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~ 252 (457)
||++||+.|..+..++..+|+.|++++|||+++.+..++...+++.++.++..++.++++.+.+.... ......+..+
T Consensus 596 WGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~ 673 (1195)
T PLN03137 596 WGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKF 673 (1195)
T ss_pred cccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887653 2334567777
Q ss_pred HHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE
Q 012728 253 LKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (457)
Q Consensus 253 l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi 331 (457)
++.. .+.++||||+++..++.+++.|...|+.+..|||+|++++|..+++.|.+|+++|||||+++++|||+|+|++||
T Consensus 674 I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VI 753 (1195)
T PLN03137 674 IKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 753 (1195)
T ss_pred HHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEE
Confidence 7653 356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCc------cchhhhhhHHHHHhHHHHHHH
Q 012728 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS------FSTRERSSKKSISDFSQMVDY 405 (457)
Q Consensus 332 ~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 405 (457)
||++|.|++.|+||+|||||+|.+|.|++||...|...++.++.......... .+......+...+++..|+.|
T Consensus 754 HydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~y 833 (1195)
T PLN03137 754 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSY 833 (1195)
T ss_pred EcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998886543222110 111223456677899999999
Q ss_pred hhcC-cchHHHHHhhhCCCcc--cccC
Q 012728 406 CEGS-GCRRKKILESFGEQVL--GCVA 429 (457)
Q Consensus 406 ~~~~-~c~r~~l~~~f~~~~~--~c~~ 429 (457)
|++. .|||+.++.|||+.+. .|..
T Consensus 834 ce~~~~CRR~~lL~yFGE~~~~~~C~~ 860 (1195)
T PLN03137 834 CENEVDCRRFLQLVHFGEKFDSTNCKK 860 (1195)
T ss_pred HhChHhhHHHHHHHHcccccCccCCCC
Confidence 9996 9999999999999863 5653
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.9e-69 Score=525.12 Aligned_cols=389 Identities=46% Similarity=0.809 Sum_probs=357.3
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.+...|++.||+..+|+.|.++|..+++|+|+++.+|||+|||+||++|++-..+.+|||+|..+|+.+|++.++..|+.
T Consensus 4 ~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~ 83 (590)
T COG0514 4 EAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIR 83 (590)
T ss_pred HHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCce
Confidence 34477999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHH
Q 012728 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (457)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l 184 (457)
+..+++.........+...+..+. .++++.+||.+.++.+++.+. ...+.++||||||++++||++|||.|.++
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~l 157 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRRL 157 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHHH
Confidence 999999999999999999988876 999999999999998877766 34589999999999999999999999999
Q ss_pred HHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEE
Q 012728 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVY 264 (457)
Q Consensus 185 ~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf 264 (457)
..+...+|+.+++++|||.++.+..++...+++..+.++..+++|||+++.+........++..+.+ +.....+..|||
T Consensus 158 g~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GIIY 236 (590)
T COG0514 158 GRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGIIY 236 (590)
T ss_pred HHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999987644444443333 224556678999
Q ss_pred eCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHH
Q 012728 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (457)
Q Consensus 265 ~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Q 344 (457)
|.|+..++.++++|+..|+++..||+||+..+|..+.+.|..++.+|+|||.++++|||.||+++||||++|.|++.|+|
T Consensus 237 c~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQ 316 (590)
T COG0514 237 CLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQ 316 (590)
T ss_pred EeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhcCcchHHHHHhhhCCCc
Q 012728 345 ESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQV 424 (457)
Q Consensus 345 r~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~ 424 (457)
.+|||||+|.+..|+++|++.|....+.+++...+ ..+..+....++.+|..||++..|+|..+++||++..
T Consensus 317 E~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~~ 388 (590)
T COG0514 317 ETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGEDE 388 (590)
T ss_pred HHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCccc
Confidence 99999999999999999999999999888877654 3455677778899999999999999999999999963
Q ss_pred -cccc
Q 012728 425 -LGCV 428 (457)
Q Consensus 425 -~~c~ 428 (457)
..|.
T Consensus 389 ~~~c~ 393 (590)
T COG0514 389 PEPCG 393 (590)
T ss_pred ccccc
Confidence 3454
No 3
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-66 Score=513.82 Aligned_cols=381 Identities=48% Similarity=0.835 Sum_probs=336.3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEe
Q 012728 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (457)
Q Consensus 29 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 108 (457)
.|++.|||..|||+|.++++.+++|+|+++++|||+|||++|++|++...+.+||++|+++|+.|+++.++.+|+.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 47888999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCch-hHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 012728 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~ 187 (457)
.+.............+..+. .+++++||+.+.+.. ++..+. ...++++|||||||++++||++|++.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~~--~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDGK--IKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 88887776666666664443 889999999887765 333332 456699999999999999999999999999999
Q ss_pred HHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHH-hcCCccEEEEeC
Q 012728 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (457)
Q Consensus 188 ~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~iIf~~ 266 (457)
+..+|+.+++++|||+++.+..++...+++..+.++..+++++++.+.+..... ..+..+..++. ..+++.+||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999999999999999999999999999888876642 45666777776 445666799999
Q ss_pred CcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHh
Q 012728 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (457)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~ 346 (457)
|++.++.+++.|++.|+.+..|||+|++++|..+++.|++|+++|||||+++++|||+|++++||||++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhcCcchHHHHHhhhCCCcc
Q 012728 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425 (457)
Q Consensus 347 GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~ 425 (457)
|||||.|.+|.|++++.+.|...++.++....... ......+.+..|..+++...|+|+.+++||++.+.
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~ 384 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ---------QRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQL 384 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHHHhccccCHHHHHHHHcCCccc
Confidence 99999999999999999999999998887643211 11223345667778888899999999999999643
No 4
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.6e-65 Score=523.04 Aligned_cols=394 Identities=42% Similarity=0.719 Sum_probs=347.4
Q ss_pred CCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHH
Q 012728 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 18 ~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~ 97 (457)
+.++..+.....|++.|||.+|||+|.++++.+++|+|+++++|||+|||++|++|++...+.+||++|+++|+.|+++.
T Consensus 5 ~~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~ 84 (607)
T PRK11057 5 EVLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQ 84 (607)
T ss_pred ccCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHH
Confidence 34566677778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCC
Q 012728 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (457)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~ 177 (457)
++.+|+....+.+................+. .+++++||+.+.+..+...+. ...+++|||||||++.+||++|
T Consensus 85 l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~--~~il~~tPe~l~~~~~~~~l~----~~~l~~iVIDEaH~i~~~G~~f 158 (607)
T PRK11057 85 LLANGVAAACLNSTQTREQQLEVMAGCRTGQ--IKLLYIAPERLMMDNFLEHLA----HWNPALLAVDEAHCISQWGHDF 158 (607)
T ss_pred HHHcCCcEEEEcCCCCHHHHHHHHHHHhCCC--CcEEEEChHHhcChHHHHHHh----hCCCCEEEEeCccccccccCcc
Confidence 9999999888888877666655555555443 789999999887766554433 3458999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcC
Q 012728 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257 (457)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~ 257 (457)
++.|..+..++..+|+.+++++|||+++....++...+++.++.+...++.++++.+.+.... .....+..++....
T Consensus 159 r~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~ 235 (607)
T PRK11057 159 RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQR 235 (607)
T ss_pred cHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcC
Confidence 999999999999999999999999999999899999999999999888999999988776543 34566777777777
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~ 337 (457)
++++||||+|+++++.+++.|++.|+.+..|||+|++++|..+++.|++|+.+|||||+++++|||+|++++|||||+|.
T Consensus 236 ~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~ 315 (607)
T PRK11057 236 GKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPR 315 (607)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhcCcchHHHHH
Q 012728 338 SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKIL 417 (457)
Q Consensus 338 s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~ 417 (457)
|.++|+||+|||||.|.+|.|++++++.|...++.++...... ........++..|..||++..|||+.++
T Consensus 316 s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~Crr~~~l 386 (607)
T PRK11057 316 NIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAG---------QQQDIERHKLNAMGAFAEAQTCRRLVLL 386 (607)
T ss_pred CHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 9999999999999999999999999999998888887653211 1123344578889999999999999999
Q ss_pred hhhCCCcccccC
Q 012728 418 ESFGEQVLGCVA 429 (457)
Q Consensus 418 ~~f~~~~~~c~~ 429 (457)
+||++....||+
T Consensus 387 ~yf~e~~~~~c~ 398 (607)
T PRK11057 387 NYFGEGRQEPCG 398 (607)
T ss_pred HHhCCCCCCCCC
Confidence 999998755444
No 5
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.4e-66 Score=471.34 Aligned_cols=432 Identities=38% Similarity=0.684 Sum_probs=382.0
Q ss_pred HHHHHHHHHhcCCCCCC-HHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 24 EALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~-~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
..+..+|++.||+..+. +.|++++..+.++ +|+.|++|||+||++||++|+|..++.+||++|..+|+.+|++.+..+
T Consensus 5 r~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 5 RKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred HHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc
Confidence 45788999999999886 8999999999876 699999999999999999999999999999999999999999999999
Q ss_pred CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHH
Q 012728 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (457)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~ 181 (457)
.+.+.-+++..+..++..+..++...++...+++.|||..+|.+|...+....+.+.+.++|+||||+.++||++|||+|
T Consensus 85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDY 164 (641)
T KOG0352|consen 85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDY 164 (641)
T ss_pred CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcch
Confidence 99999999999999999999999999999999999999999999999888888888899999999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE-ecCCCCCceEEEEEEeCchhhHHHHHHHHHHhc----
Q 012728 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN---- 256 (457)
Q Consensus 182 ~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~---- 256 (457)
..+..++..+++++++++|||.++.+.+++...+.+..|+.+ ..+..|.|++|.+..+....+-+..|.++-...
T Consensus 165 L~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~ 244 (641)
T KOG0352|consen 165 LTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKH 244 (641)
T ss_pred hhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCCh
Confidence 999999999999999999999999999999999999999854 556778999999888877777777777765331
Q ss_pred ---------CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCc
Q 012728 257 ---------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327 (457)
Q Consensus 257 ---------~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v 327 (457)
..+..||||.|++.|++++-.|...|+++..||+|+...+|.++.+.|.+|+..|++||..+++|+|.|+|
T Consensus 245 ~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~V 324 (641)
T KOG0352|consen 245 EKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDV 324 (641)
T ss_pred hhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcce
Confidence 24578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhh
Q 012728 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE 407 (457)
Q Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (457)
++|||+++|.|+.-|.|..|||||+|.+++|-+||...|...+.+++.....+ .......+...+..+..+..|.++||
T Consensus 325 RFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~ak-lrek~~ke~~~k~~I~~F~k~~eFCE 403 (641)
T KOG0352|consen 325 RFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAK-LREKAKKEMQIKSIITGFAKMLEFCE 403 (641)
T ss_pred eEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHH-HHHhcchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988754321 11122234445667778999999999
Q ss_pred cCcchHHHHHhhhCCCcccccCCCcc--ccccccchHHHHHhccCCCceee
Q 012728 408 GSGCRRKKILESFGEQVLGCVASVTH--RVVSFISPFILLISSSKTDTCII 456 (457)
Q Consensus 408 ~~~c~r~~l~~~f~~~~~~c~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 456 (457)
...||+..+..|||+.-++|.+.+++ +-.........+.++.|.++|+-
T Consensus 404 ~~~CRH~~ia~fFgD~~p~ckg~cd~c~~p~k~~r~~e~f~~s~~s~~~~~ 454 (641)
T KOG0352|consen 404 SARCRHVSIASFFDDTECPCKTNCDYCRDPTKTIRNVEAFINSEASTGRSM 454 (641)
T ss_pred HcccchHHHHHhcCCCCCCCCCCccccCCHHHHHHHHHHHHHhhhhccccc
Confidence 99999999999999997755432221 11112222344588999999973
No 6
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=3e-64 Score=515.47 Aligned_cols=382 Identities=42% Similarity=0.730 Sum_probs=342.7
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCcee
Q 012728 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (457)
Q Consensus 27 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 106 (457)
.+.|++.|||++|||+|.++++.+++|+|+++++|||+|||++|++|++...+.++|++|+++|+.|+++.++.+|+.+.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 35788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHH
Q 012728 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (457)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~ 186 (457)
.+++.............+..+. .+++++||+.+.++.+...+ ....+++|||||||++.+||++|++.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9988888777766666666554 88999999988876654433 34569999999999999999999999999999
Q ss_pred HHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeC
Q 012728 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (457)
Q Consensus 187 ~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~ 266 (457)
+...+|+.+++++|||+++.+..++..++++.++..+..++.++++.+.+.... .+...+.+++....+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999888888999999998887653 45667778887777788999999
Q ss_pred CcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHh
Q 012728 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (457)
Q Consensus 267 s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~ 346 (457)
|++.++.+++.|...|+++..|||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||||++|.|++.|+|++
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhcCcchHHHHHhhhCCCcc
Q 012728 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVL 425 (457)
Q Consensus 347 GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~ 425 (457)
|||||+|.++.|+++++..|...++.+++..... ..........+.+|..||++..|+|..+++|||+...
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~~ 383 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEAD--------DDYKQIEREKLRAMIAYCETQTCRRAYILRYFGENEV 383 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCCc--------HHHHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCCC
Confidence 9999999999999999999999988887654321 1222344667889999999999999999999999753
No 7
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-59 Score=483.68 Aligned_cols=397 Identities=50% Similarity=0.834 Sum_probs=358.8
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
++....+...||+..+||.|.++|...+.|+|.++.+|||+||++||++|++..++.+|||+|..+|+.+|...+...++
T Consensus 250 ~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I 329 (941)
T KOG0351|consen 250 KELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGI 329 (941)
T ss_pred hHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCc
Confidence 35777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHH-HHHhhhhcCCccEEEEeccccccccCCCCHHHHH
Q 012728 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (457)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~-~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~ 182 (457)
.+..+.+.........++..+..+.+.+++++.|||.+...+.+. .+......+.+.++||||||+.++||++|||.|.
T Consensus 330 ~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk 409 (941)
T KOG0351|consen 330 PACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYK 409 (941)
T ss_pred ceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHH
Confidence 999999999999999999999999888999999999887766554 3444545555899999999999999999999999
Q ss_pred HHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEE
Q 012728 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262 (457)
Q Consensus 183 ~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~i 262 (457)
.+..++..++..+++++|||.+..+..++.+.+++.++.++..+++++|+++.|.........+..+...-...+...+|
T Consensus 410 ~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 410 RLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred HHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999998874333333333333446788899
Q ss_pred EEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHH
Q 012728 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAF 342 (457)
Q Consensus 263 If~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~ 342 (457)
|||.++.+|+.++..|...|+++..||+||+.++|..+.+.|..++++|+|||=++++|||.|+|++||||++|+|++.|
T Consensus 490 IYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~Y 569 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGY 569 (941)
T ss_pred EEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCccchhhhhh-HHHHHhHHHHHHHhhc-CcchHHHHHhhh
Q 012728 343 YQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS-KKSISDFSQMVDYCEG-SGCRRKKILESF 420 (457)
Q Consensus 343 ~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~c~r~~l~~~f 420 (457)
+|.+|||||+|....|++|+...|...++.++...... .... .....++.+++.||++ +.|||+.++.||
T Consensus 570 YQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~~--------~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~f 641 (941)
T KOG0351|consen 570 YQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNRL--------SGVKKFTRLLELVQVVTYCENETDCRRKQILEYF 641 (941)
T ss_pred HHhccccCcCCCcceeEEecchhHHHHHHHHHHccccc--------cchhhccchhhHHHHHHhhcCccchhHHHHHHhc
Confidence 99999999999999999999999999999999887211 1112 2567889999999996 699999999999
Q ss_pred CCCcc--ccc
Q 012728 421 GEQVL--GCV 428 (457)
Q Consensus 421 ~~~~~--~c~ 428 (457)
++.+. .|.
T Consensus 642 ge~f~~~~c~ 651 (941)
T KOG0351|consen 642 GEEFDSKHCK 651 (941)
T ss_pred ccccchhhcc
Confidence 99964 355
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-59 Score=421.44 Aligned_cols=355 Identities=23% Similarity=0.296 Sum_probs=294.5
Q ss_pred cccccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeE
Q 012728 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIV 81 (457)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~ 81 (457)
++..++...|.++++.+++.+++++ .|+..|+++|.++||.++.|+|++..|.||||||.+|++|++++ ...+
T Consensus 54 ~~~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~ 132 (476)
T KOG0330|consen 54 MQTDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFA 132 (476)
T ss_pred hhhhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceE
Confidence 4557788899999999999999998 59999999999999999999999999999999999999999864 6789
Q ss_pred EEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hh
Q 012728 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IH 154 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~ 154 (457)
+|++|||+|+.|+.+.+..+ |+.+..+-++....... .-...++++ +++|||++.+... .+
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~----~~L~kkPhi--------lVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQA----NQLSKKPHI--------LVATPGRLWDHLENTKGF 200 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHH----HHhhcCCCE--------EEeCcHHHHHHHHhccCc
Confidence 99999999999999999886 44555555555443322 112223222 6788888766633 45
Q ss_pred hcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---CC
Q 012728 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RP 230 (457)
Q Consensus 155 ~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 230 (457)
++..++++|+||||+++++. |. ..+..++..+| .++.+++|||++..+.+.. ...+.+|..+..+.. -+
T Consensus 201 ~le~lk~LVlDEADrlLd~d--F~---~~ld~ILk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMD--FE---EELDYILKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred cHHHhHHHhhchHHhhhhhh--hH---HHHHHHHHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchH
Confidence 66779999999999999876 55 44555666666 7999999999999998744 556778877665432 22
Q ss_pred ceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCce
Q 012728 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (457)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (457)
++...+...+. ..|-..|..+++...+..+||||++...+..++-.|+..|+.+..+||.|+++.|...++.|++|..+
T Consensus 274 ~lkQ~ylfv~~-k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~ 352 (476)
T KOG0330|consen 274 HLKQTYLFVPG-KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS 352 (476)
T ss_pred HhhhheEeccc-cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc
Confidence 33222222211 35666788888888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCC
Q 012728 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383 (457)
Q Consensus 311 vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 383 (457)
||+|||+++||+|+|.|++|||||+|.+..+|+||+||+||+|++|.++.+++..|.+.+.+|+...+.+.+.
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~ 425 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPE 425 (476)
T ss_pred EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998877766543
No 9
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=4.9e-58 Score=410.42 Aligned_cols=416 Identities=39% Similarity=0.724 Sum_probs=374.6
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHH
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~ 94 (457)
-.-++++-+.+..+.|++.|..+.+||.|..++.+...|++++++.|||.||++||++|++...+.++|++|..+|++++
T Consensus 71 wdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmedq 150 (695)
T KOG0353|consen 71 WDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQ 150 (695)
T ss_pred cccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHH
Confidence 34467888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccC-chhHHHHHhhhhcCCccEEEEecccccccc
Q 012728 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (457)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t-~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (457)
.-.++.+|+....++...+..........+.+.....++++.||+.++. ..+.+.+.+....+.+.++.+||+|+..+|
T Consensus 151 il~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqw 230 (695)
T KOG0353|consen 151 ILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQW 230 (695)
T ss_pred HHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhh
Confidence 9999999999999999999988888888888888889999999997764 557788888888888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCch-hhHHHHHHHH
Q 012728 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL-DDAYADLCSV 252 (457)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~l~~~ 252 (457)
|++||+.|..+.-+.+++++++++++|||.++.+..+....++......+..+++|||+.|.+...+.. ++-.+.+..+
T Consensus 231 ghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k~ 310 (695)
T KOG0353|consen 231 GHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAKL 310 (695)
T ss_pred CcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987655 4556777777
Q ss_pred HHh-cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE
Q 012728 253 LKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (457)
Q Consensus 253 l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi 331 (457)
++. ..+...||||-+.++++.++..|+..|+.+..||+.|.+.+|.-+.+.|..|+++|+|||-++++|||.|+|++||
T Consensus 311 i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvi 390 (695)
T KOG0353|consen 311 IKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVI 390 (695)
T ss_pred hccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEE
Confidence 765 3566789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCHHHHHH-------------------------------------------HhcccCCCCCCceEEEEeccchHH
Q 012728 332 HFNIPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDRR 368 (457)
Q Consensus 332 ~~~~p~s~~~~~Q-------------------------------------------r~GRagR~g~~g~~~~~~~~~~~~ 368 (457)
|..+|.|++.|.| ..|||||++.+..|++||.-.|..
T Consensus 391 hhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 391 HHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred ecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 9999999999999 789999999999999999988877
Q ss_pred HHHHHHHhcccCCCCccchhhhhhHHHHHhHHHHHHHhhc-CcchHHHHHhhhCCCcc---------cccC---CCcccc
Q 012728 369 RMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQVL---------GCVA---SVTHRV 435 (457)
Q Consensus 369 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~c~r~~l~~~f~~~~~---------~c~~---~~~~~~ 435 (457)
....++... +....++-+|+.|+.+ +.|||-.+.++|++.|+ +|+. -....+
T Consensus 471 k~ssmv~~e---------------~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~~n~f~~~n~ 535 (695)
T KOG0353|consen 471 KISSMVQME---------------NTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCKDNAFEGKNI 535 (695)
T ss_pred hHHHHHHHH---------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccCccccccch
Confidence 766655332 3345778899999998 69999999999999985 3443 234556
Q ss_pred ccccchHHHH
Q 012728 436 VSFISPFILL 445 (457)
Q Consensus 436 ~~~~~~~~~~ 445 (457)
.+||.+++.-
T Consensus 536 ~ey~~dl~e~ 545 (695)
T KOG0353|consen 536 KEYCRDLIEA 545 (695)
T ss_pred HHHHHHHHHH
Confidence 6777766543
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-58 Score=440.32 Aligned_cols=346 Identities=25% Similarity=0.372 Sum_probs=281.9
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------------CCeE
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------------~~~~ 81 (457)
...|+.+++++++...|+. .||+.|+|+|.+.||.++.|+|++..|.||||||++|++|++.+ ++.+
T Consensus 90 ~~~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 90 SAAFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred chhhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 3489999999999999998 59999999999999999999999999999999999999998743 6789
Q ss_pred EEEcchHHHHHHHHHHHHHcCCc----eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hh
Q 012728 82 LVVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HS 155 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~ 155 (457)
||++|||+||.|..+.+..++.. ...+.++....... ..+..+ +++ +++||+++.++.+. ..
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~---~~l~~g---vdi------viaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQL---RDLERG---VDV------VIATPGRLIDLLEEGSLN 236 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHH---HHHhcC---CcE------EEeCChHHHHHHHcCCcc
Confidence 99999999999999999886433 44455554433322 222221 333 67788888888554 45
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC-----
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN----- 228 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~----- 228 (457)
+..+.++|+||||+|+++| |+ .++..+....| ..|++++|||+|..+......++. ++..+.....
T Consensus 237 l~~v~ylVLDEADrMldmG--Fe---~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a 309 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLDMG--FE---PQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKA 309 (519)
T ss_pred ccceeEEEeccHHhhhccc--cH---HHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhh
Confidence 6689999999999999999 56 55566677763 458999999999999887777666 5555443321
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHh---cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh
Q 012728 229 RPNLFYEVRYKDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~ 305 (457)
..++...+...+ ...|...|..+|.. ...+++||||+|+..|++|+..|+..++++..+||+.++.+|..+++.|+
T Consensus 310 ~~~i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fr 388 (519)
T KOG0331|consen 310 NHNIRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFR 388 (519)
T ss_pred hcchhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcc
Confidence 223333333333 34555555555544 35778999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012728 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 306 ~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
+|+..||||||+++||||+|+|++||+||+|.++++|+||+||+||+|+.|.+++|++..+......+.+.....
T Consensus 389 eG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 389 EGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred cCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999988888877665443
No 11
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-55 Score=436.10 Aligned_cols=344 Identities=19% Similarity=0.253 Sum_probs=273.6
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-------------CCe
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGI 80 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-------------~~~ 80 (457)
...|+++++++.+.++|.. +||..|+|+|.+++|.+++|+|++++||||||||++|++|++.. +++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 4679999999999999998 79999999999999999999999999999999999999998641 367
Q ss_pred EEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhh
Q 012728 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIH 154 (457)
Q Consensus 81 ~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~ 154 (457)
+||++||++||.|+.+.+..+ ++....+.++........ .+. . .++++++| |+++..+. ...
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~l~-~--~~~IlV~T------P~~l~~~l~~~~~ 153 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---VLE-S--GVDILIGT------TGRLIDYAKQNHI 153 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc-C--CCCEEEEC------HHHHHHHHHcCCc
Confidence 999999999999998887764 455555555443332211 121 1 24565555 45544442 234
Q ss_pred hcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC---C
Q 012728 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---N 228 (457)
Q Consensus 155 ~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~ 228 (457)
.+..+++||+||||++.++| |. ..+..+....| ..+.+++|||++..........+ .++..+.... .
T Consensus 154 ~l~~v~~lViDEad~l~~~~--f~---~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~ 226 (423)
T PRK04837 154 NLGAIQVVVLDEADRMFDLG--FI---KDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKT 226 (423)
T ss_pred ccccccEEEEecHHHHhhcc--cH---HHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcC
Confidence 56779999999999999988 44 44455556665 34578999999988877555544 4454433221 1
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC
Q 012728 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (457)
..++...+.. .....+...|..+++.....++||||+++..|+.+++.|...|+++..+||++++++|..+++.|++|+
T Consensus 227 ~~~i~~~~~~-~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~ 305 (423)
T PRK04837 227 GHRIKEELFY-PSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGD 305 (423)
T ss_pred CCceeEEEEe-CCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCC
Confidence 2233322222 233567788888888777789999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012728 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 309 ~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
++|||||+++++|||+|++++||+||+|.++.+|+||+||+||.|+.|.+++|+++.+...+..+.+...
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999998888887755443
No 12
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-56 Score=381.54 Aligned_cols=349 Identities=20% Similarity=0.322 Sum_probs=291.6
Q ss_pred ccccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEE
Q 012728 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (457)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~l 82 (457)
+.......|+++++.+++++.+.. +||+.|+.+|+.|++.+++|+|++++|..|+|||.+|.+..++. .-.++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~l 99 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQAL 99 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEE
Confidence 445677889999999999999998 79999999999999999999999999999999999988777653 56799
Q ss_pred EEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhh--hc
Q 012728 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SR 156 (457)
Q Consensus 83 vl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~--~~ 156 (457)
+++|||+|+.|..+....+| +++....++...+.... .+. ++.+.+.+|||+..++.+.. ..
T Consensus 100 ilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedik---kld---------~G~hvVsGtPGrv~dmikr~~L~t 167 (400)
T KOG0328|consen 100 ILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIK---KLD---------YGQHVVSGTPGRVLDMIKRRSLRT 167 (400)
T ss_pred EecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhh---hhc---------ccceEeeCCCchHHHHHHhccccc
Confidence 99999999999999888864 44444443333222111 111 23333778888888885544 44
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec---CCCCCce
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNL 232 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i 232 (457)
+.+.++|+||||.+++.|+. .++-.+.+.+| +.|++++|||+|.+..+.... .+.+|+.+-. +.....+
T Consensus 168 r~vkmlVLDEaDemL~kgfk-----~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~k--fmtdpvrilvkrdeltlEgI 240 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKGFK-----EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEK--FMTDPVRILVKRDELTLEGI 240 (400)
T ss_pred cceeEEEeccHHHHHHhhHH-----HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHH--hcCCceeEEEecCCCchhhh
Confidence 56899999999999988743 66777788887 899999999999999885544 4466664433 3333445
Q ss_pred EEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEE
Q 012728 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (457)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (457)
...+...+..+.|++.|+++...-.-.+++|||||+..+..+.+.+++..+.|..+||+|++++|..++..|++|+.+||
T Consensus 241 Kqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvL 320 (400)
T KOG0328|consen 241 KQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVL 320 (400)
T ss_pred hhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEE
Confidence 55566666667899999999998888889999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012728 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 313 vaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
++||+.++|+|+|.|++|||||+|.+.+.|+||+||.||.|+.|.++-|+..+|.+.++.+.+..
T Consensus 321 itTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 321 ITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred EEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998887654
No 13
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-55 Score=435.96 Aligned_cols=346 Identities=23% Similarity=0.337 Sum_probs=288.6
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-------CCe-EEEEcc
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGI-VLVVSP 86 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-------~~~-~lvl~P 86 (457)
..|+++++++.+.+++.+ .||..|+|+|..++|.++.|+|+++.|+||||||++|++|++++ ... +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 579999999999999998 69999999999999999999999999999999999999999864 112 899999
Q ss_pred hHHHHHHHHHHHHHcC-----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012728 87 LIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
||+||.|..+.+..++ +.+..+.++....... ..+..+ +++ +|+||+++.++.. ...+..+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~---~~i------vVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG---VDI------VVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC---CCE------EEECccHHHHHHHcCCcchhhc
Confidence 9999999999988743 3445555555544433 222222 333 6777777777744 3467779
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC---C--CCCceE
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---F--NRPNLF 233 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~i~ 233 (457)
.++|+||||+|+++| |. ..+..+....| +.|++++|||++..+.......+. +|..+... . ....+.
T Consensus 176 ~~lVlDEADrmLd~G--f~---~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~--~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FI---DDIEKILKALPPDRQTLLFSATMPDDIRELARRYLN--DPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CH---HHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcc--CCcEEEEccccccccccCce
Confidence 999999999999998 55 55666677776 699999999999976664444443 66544333 1 345666
Q ss_pred EEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEE
Q 012728 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (457)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 313 (457)
..+........+...|..+++.....++||||+|+..++.++..|...|+++..+||++++.+|..+++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 66666655446999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHhcccC
Q 012728 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSK 380 (457)
Q Consensus 314 aT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~ 380 (457)
|||+++||||+|++++|||||+|.++++|+||+||+||+|..|.+++|+.+. |...++.+.+.....
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999986 888888888775444
No 14
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=9e-55 Score=438.09 Aligned_cols=347 Identities=22% Similarity=0.316 Sum_probs=270.2
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------CCeE
Q 012728 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIV 81 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----------~~~~ 81 (457)
....|+++++++.+.++|++ +||.+|+|+|.+++|.+++|+|++++||||||||++|++|++.+ ++.+
T Consensus 128 p~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~ 206 (545)
T PTZ00110 128 PVVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIV 206 (545)
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 34578889999999999997 69999999999999999999999999999999999999998642 5679
Q ss_pred EEEcchHHHHHHHHHHHHHcCC----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhh
Q 012728 82 LVVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHS 155 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~ 155 (457)
|||+||++||.|+.+.++.++. ......++...... ...+.. .+++++ +||+++.++.. ...
T Consensus 207 LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q---~~~l~~---~~~IlV------aTPgrL~d~l~~~~~~ 274 (545)
T PTZ00110 207 LVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQ---IYALRR---GVEILI------ACPGRLIDFLESNVTN 274 (545)
T ss_pred EEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHH---HHHHHc---CCCEEE------ECHHHHHHHHHcCCCC
Confidence 9999999999999999988653 33333333332222 112222 245554 55555544432 344
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-C---CCC
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F---NRP 230 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~ 230 (457)
+.++++||+||||+++++| |++.+ ..+...+ ++.|++++|||++....... ..+....+..+... . ...
T Consensus 275 l~~v~~lViDEAd~mld~g--f~~~i---~~il~~~~~~~q~l~~SAT~p~~v~~l~-~~l~~~~~v~i~vg~~~l~~~~ 348 (545)
T PTZ00110 275 LRRVTYLVLDEADRMLDMG--FEPQI---RKIVSQIRPDRQTLMWSATWPKEVQSLA-RDLCKEEPVHVNVGSLDLTACH 348 (545)
T ss_pred hhhCcEEEeehHHhhhhcc--hHHHH---HHHHHhCCCCCeEEEEEeCCCHHHHHHH-HHHhccCCEEEEECCCccccCC
Confidence 6679999999999999988 55444 4444444 57899999999998875533 33333344443321 1 123
Q ss_pred ceEEEEEEeCchhhHHHHHHHHHHhc--CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC
Q 012728 231 NLFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (457)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (457)
++...+.... ..++...|..+++.. .+.++||||++++.|+.++..|...|+.+..+||++++.+|..+++.|++|+
T Consensus 349 ~i~q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~ 427 (545)
T PTZ00110 349 NIKQEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK 427 (545)
T ss_pred CeeEEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC
Confidence 3333333222 235566666666653 5678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 309 ~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
.+|||||+++++|||+|++++||+||+|.++++|+||+||+||.|+.|.+++|+++++...++.+++....
T Consensus 428 ~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 428 SPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred CcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998888777665443
No 15
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.3e-54 Score=431.13 Aligned_cols=344 Identities=22% Similarity=0.297 Sum_probs=276.1
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcchH
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~~ 88 (457)
..|+.+++++.+.++|.+ +||.+|+|+|.++++.+++|+|++++||||+|||++|++|++.+ ..+++|++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 469999999999999998 79999999999999999999999999999999999999998864 34799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccE
Q 012728 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (457)
Q Consensus 89 ~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~ 161 (457)
+|+.|+.+.++.+ +.....+.++........ .+. ...+++++ ||+++..+.. ...+..+++
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~---~l~---~~~~IvV~------Tp~rl~~~l~~~~~~l~~l~~ 150 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQID---SLE---HGAHIIVG------TPGRILDHLRKGTLDLDALNT 150 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHH---Hhc---CCCCEEEE------ChHHHHHHHHcCCccHHHCCE
Confidence 9999999988874 344444555444333221 111 22455554 5555554432 234566899
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec--CCCCCceEEEEEE
Q 012728 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRY 238 (457)
Q Consensus 162 lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~ 238 (457)
||+||||+++++| |. ..+..+....| ..|++++|||+++.........+ .++..+.. ....+.+...+..
T Consensus 151 lViDEad~~l~~g--~~---~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~i~~~~~~ 223 (460)
T PRK11776 151 LVLDEADRMLDMG--FQ---DAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQ--RDPVEVKVESTHDLPAIEQRFYE 223 (460)
T ss_pred EEEECHHHHhCcC--cH---HHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhc--CCCEEEEECcCCCCCCeeEEEEE
Confidence 9999999999988 44 45556666666 67899999999988766444433 44544332 2233334433333
Q ss_pred eCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 012728 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (457)
Q Consensus 239 ~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 318 (457)
... ..+...+..+++.....++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 224 ~~~-~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~ 302 (460)
T PRK11776 224 VSP-DERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVA 302 (460)
T ss_pred eCc-HHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccc
Confidence 332 4578888888888778889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
++|+|+|++++||+||+|.++.+|+||+||+||.|+.|.+++++.+.|...++.+.+....
T Consensus 303 ~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 303 ARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred ccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999998888877665443
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.6e-54 Score=426.99 Aligned_cols=343 Identities=21% Similarity=0.296 Sum_probs=270.4
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------------CCeEEE
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------------~~~~lv 83 (457)
.|+++++++.+.++|.+ +||..|+|+|.++++.+++|+|++++||||+|||++|++|+++. ..++||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 58899999999999998 79999999999999999999999999999999999999998753 237999
Q ss_pred EcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhhcC
Q 012728 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (457)
Q Consensus 84 l~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~~~ 157 (457)
++||++|+.|+.+.++.+ ++....+.++........ .+. ...+|+++||+ ++..+. ....+.
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~---~~~~IiV~TP~------rL~~~~~~~~~~l~ 148 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM---KLR---GGVDVLVATPG------RLLDLEHQNAVKLD 148 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHH---HHc---CCCcEEEEChH------HHHHHHHcCCcccc
Confidence 999999999999998874 344444444443332211 111 12566665555 443332 233466
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec---CCCCCceE
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLF 233 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~ 233 (457)
.+++|||||||++++++ |. ..+..+...++ ..|++++|||+++.........+ .++..+.. .....++.
T Consensus 149 ~v~~lViDEah~ll~~~--~~---~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~ 221 (456)
T PRK10590 149 QVEILVLDEADRMLDMG--FI---HDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASEQVT 221 (456)
T ss_pred cceEEEeecHHHHhccc--cH---HHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEeccccccccee
Confidence 79999999999999988 33 44555566665 57899999999988755444433 33433321 22233343
Q ss_pred EEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEE
Q 012728 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (457)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv 313 (457)
..+.... ...+...+..++......++||||+++..++.+++.|...|+.+..+||++++++|..+++.|++|+++|||
T Consensus 222 ~~~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLV 300 (456)
T PRK10590 222 QHVHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300 (456)
T ss_pred EEEEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEE
Confidence 3333332 235556667777777778899999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 314 aT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
||+++++|||+|++++||+|++|.++.+|+||+||+||.|..|.+++++...|...++.+.+....
T Consensus 301 aTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred EccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999998888887765443
No 17
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.1e-53 Score=433.74 Aligned_cols=347 Identities=20% Similarity=0.287 Sum_probs=276.6
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcc
Q 012728 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P 86 (457)
....|++++|++++.++|.+ +||.+|+|+|.++++.+++|+|++++||||+|||++|++|++.. .+++||++|
T Consensus 4 ~~~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~P 82 (629)
T PRK11634 4 FETTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAP 82 (629)
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeC
Confidence 34469999999999999998 79999999999999999999999999999999999999998753 568999999
Q ss_pred hHHHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhhcCCc
Q 012728 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~~~~l 159 (457)
|++|+.|+.+.+..+ ++....+.++...... ...+. ...+|+++|| +.+.++. ....+.++
T Consensus 83 TreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q---~~~l~---~~~~IVVgTP------grl~d~l~r~~l~l~~l 150 (629)
T PRK11634 83 TRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQ---LRALR---QGPQIVVGTP------GRLLDHLKRGTLDLSKL 150 (629)
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHH---HHHhc---CCCCEEEECH------HHHHHHHHcCCcchhhc
Confidence 999999999887764 3444444444433222 11121 1245555554 4443332 23456679
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec---CCCCCceEEE
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~ 235 (457)
++||+||||+++++++ . ..+..++..+| ..|+++||||+++........++ .++..+.. ....+++...
T Consensus 151 ~~lVlDEAd~ml~~gf--~---~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l--~~~~~i~i~~~~~~~~~i~q~ 223 (629)
T PRK11634 151 SGLVLDEADEMLRMGF--I---EDVETIMAQIPEGHQTALFSATMPEAIRRITRRFM--KEPQEVRIQSSVTTRPDISQS 223 (629)
T ss_pred eEEEeccHHHHhhccc--H---HHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHc--CCCeEEEccCccccCCceEEE
Confidence 9999999999999884 3 45666666776 68899999999988765444433 34443322 2233444433
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012728 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+.... ...+...|..++......++||||+|+..++.+++.|...|+.+..+||++++.+|..+++.|++|+++|||||
T Consensus 224 ~~~v~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT 302 (629)
T PRK11634 224 YWTVW-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT 302 (629)
T ss_pred EEEec-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc
Confidence 33322 24677788888887777889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012728 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
+++++|||+|++++||+||+|.++++|+||+||+||.|+.|.+++++.+.+...++.+.+.....
T Consensus 303 dv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~ 367 (629)
T PRK11634 303 DVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLT 367 (629)
T ss_pred chHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998888887765443
No 18
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.5e-54 Score=436.18 Aligned_cols=345 Identities=16% Similarity=0.220 Sum_probs=274.4
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-------------CCeE
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIV 81 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-------------~~~~ 81 (457)
..|+++++++.+.++|.+ +||..|+|+|.++||.+++|+|++++||||||||++|++|++.+ ..++
T Consensus 9 ~~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 9 LTFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 369999999999999998 79999999999999999999999999999999999999998752 3689
Q ss_pred EEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hh
Q 012728 82 LVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IH 154 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~ 154 (457)
||++||++|+.|+++.+..++ +....+.++.......... .. ..+|+++||+ .+..+.. ..
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l----~~--~~dIiV~TP~------rL~~~l~~~~~~ 155 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELL----QQ--GVDVIIATPG------RLIDYVKQHKVV 155 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHH----hC--CCCEEEECHH------HHHHHHHhcccc
Confidence 999999999999999988753 4455555555443322221 11 2556555554 4444322 23
Q ss_pred hcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-CCCC
Q 012728 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRP 230 (457)
Q Consensus 155 ~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 230 (457)
.+..+++|||||||++.+++ |. ..+..+...++ +.|++++|||++..+.......+.......+... ....
T Consensus 156 ~l~~v~~lViDEAh~lld~g--f~---~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~ 230 (572)
T PRK04537 156 SLHACEICVLDEADRMFDLG--FI---KDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAA 230 (572)
T ss_pred chhheeeeEecCHHHHhhcc--hH---HHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccccc
Confidence 45668999999999999988 44 44455566565 5789999999999887755555432222222221 2222
Q ss_pred ceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCce
Q 012728 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (457)
Q Consensus 231 ~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (457)
++...+.. .....+...+..+++...+.++||||+++..++.+++.|...|+.+..+||++++.+|..+++.|++|+++
T Consensus 231 ~i~q~~~~-~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~ 309 (572)
T PRK04537 231 RVRQRIYF-PADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLE 309 (572)
T ss_pred ceeEEEEe-cCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 33333332 23356777888888887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012728 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 311 vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
|||||+++++|||+|++++||+||+|.++++|+||+||+||.|..|.+++|+.+.+...+..+.+...
T Consensus 310 VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 310 ILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred EEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999988888777766543
No 19
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=4.9e-54 Score=431.70 Aligned_cols=347 Identities=22% Similarity=0.336 Sum_probs=268.3
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc-------------CC
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KP 78 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~-------------~~ 78 (457)
.....|+++++++.+.+.|++ .||..|+|+|.++++.+++|+|++++||||||||++|++|++. .+
T Consensus 118 ~pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~ 196 (518)
T PLN00206 118 PPILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRN 196 (518)
T ss_pred chhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCC
Confidence 455678899999999999997 6999999999999999999999999999999999999999874 25
Q ss_pred CeEEEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--
Q 012728 79 GIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-- 152 (457)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~-- 152 (457)
+++||++||++|+.|+.+.++.++ .......++...... ...+. ...++ +++||+++..+..
T Consensus 197 ~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q---~~~l~---~~~~I------iV~TPgrL~~~l~~~ 264 (518)
T PLN00206 197 PLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQ---LYRIQ---QGVEL------IVGTPGRLIDLLSKH 264 (518)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHH---HHHhc---CCCCE------EEECHHHHHHHHHcC
Confidence 689999999999999888877653 233333333322221 11121 12445 4555555544432
Q ss_pred hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-CCCCc
Q 012728 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPN 231 (457)
Q Consensus 153 ~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 231 (457)
...+.++++||+||||+++++| |++ .+..+....++.|++++|||+++...... ..+ ..++..+... ...++
T Consensus 265 ~~~l~~v~~lViDEad~ml~~g--f~~---~i~~i~~~l~~~q~l~~SATl~~~v~~l~-~~~-~~~~~~i~~~~~~~~~ 337 (518)
T PLN00206 265 DIELDNVSVLVLDEVDCMLERG--FRD---QVMQIFQALSQPQVLLFSATVSPEVEKFA-SSL-AKDIILISIGNPNRPN 337 (518)
T ss_pred CccchheeEEEeecHHHHhhcc--hHH---HHHHHHHhCCCCcEEEEEeeCCHHHHHHH-HHh-CCCCEEEEeCCCCCCC
Confidence 3456678999999999999988 554 44556667788999999999998875533 332 3455544432 22222
Q ss_pred --eEEEEEEeCchhhHHHHHHHHHHhc--CCccEEEEeCCcccHHHHHHHHHh-CCCceEeecCCCCHHHHHHHHHHHhc
Q 012728 232 --LFYEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWIS 306 (457)
Q Consensus 232 --i~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~-~g~~~~~~~~~~~~~~r~~~~~~f~~ 306 (457)
+...+.... ...+...+.++++.. ...++||||+++..++.+++.|.. .|+.+..+||++++++|..+++.|++
T Consensus 338 ~~v~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~ 416 (518)
T PLN00206 338 KAVKQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV 416 (518)
T ss_pred cceeEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC
Confidence 222222222 234556667777653 235799999999999999999975 58999999999999999999999999
Q ss_pred CCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 307 g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
|+.+|||||+++++|||+|++++||+||+|.++.+|+||+|||||.|..|.+++|++.++...+..+.+....
T Consensus 417 G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~ 489 (518)
T PLN00206 417 GEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKS 489 (518)
T ss_pred CCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988777777665443
No 20
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-55 Score=406.32 Aligned_cols=343 Identities=22% Similarity=0.354 Sum_probs=279.3
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---------CCeEEEE
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---------~~~~lvl 84 (457)
..+|.+++|+..+++++.. +||..|+|+|..+||..+-|+|++.+|.||||||.+|.+|++++ ..+|||+
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 5689999999999999997 79999999999999999999999999999999999999999875 4589999
Q ss_pred cchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcC
Q 012728 85 SPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRG 157 (457)
Q Consensus 85 ~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~ 157 (457)
+|||+|+.|.+...+++. +.+....++......... ....+++ +++|||++-+..+ .+.+.
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~----LRs~PDI--------VIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAV----LRSRPDI--------VIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHH----HhhCCCE--------EEecchhHHHHhccCCCcccc
Confidence 999999999888776642 333333444443333322 2223333 6778887655533 33466
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCC---Cce-
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNL- 232 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i- 232 (457)
++.++|+||||+|++.| |+ .++..+.+.+| +.|.++||||++..+.. ...+.++.|+.+...... +.+
T Consensus 327 siEVLvlDEADRMLeeg--Fa---demnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FA---DEMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HH---HHHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 78999999999999988 44 66777777787 79999999999999877 556677888866544322 222
Q ss_pred --EEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCce
Q 012728 233 --FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (457)
Q Consensus 233 --~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (457)
++.+.+.. ....-..+..++......++|||+.|++.|.++.-.|--.|+++.-+||++++.+|...++.|++++++
T Consensus 400 QEFiRIR~~r-e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPKR-EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheecccc-ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 22222221 122333445555555567899999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012728 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 311 vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
||||||++++|+||+.|..||||.+|.+.+.|+||+||++|+|+.|.+++|+...|...++.+++..
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999874
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.8e-53 Score=422.23 Aligned_cols=341 Identities=23% Similarity=0.335 Sum_probs=275.0
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC----------CCeEEEEc
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----------~~~~lvl~ 85 (457)
.|+++++++.+.+.|++ +||.+|+++|.++++.+++|+|++++||||+|||++|++|+++. ..++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 58999999999999998 69999999999999999999999999999999999999998752 36899999
Q ss_pred chHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhhcCCc
Q 012728 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~~~~l 159 (457)
||++|+.|+.+.+..+ ++....+.++.......... .. ..+++++|| +++..+. .......+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l----~~--~~~IlV~Tp------~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVF----SE--NQDIVVATP------GRLLQYIKEENFDCRAV 148 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHh----cC--CCCEEEECh------HHHHHHHHcCCcCcccC
Confidence 9999999998887764 45555566555444332221 11 245655555 4444432 23345668
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC---CCCceEEE
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYE 235 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~ 235 (457)
++||+||||+++++| |...+ ..+....+ ..|++++|||++......+...+. .++..+.... .+.++...
T Consensus 149 ~~lViDEah~~l~~~--~~~~~---~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 149 ETLILDEADRMLDMG--FAQDI---ETIAAETRWRKQTLLFSATLEGDAVQDFAERLL-NDPVEVEAEPSRRERKKIHQW 222 (434)
T ss_pred CEEEEECHHHHhCCC--cHHHH---HHHHHhCccccEEEEEEeecCHHHHHHHHHHHc-cCCEEEEecCCcccccCceEE
Confidence 999999999999988 55444 44444444 578999999998776666666553 4455443322 23344444
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012728 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+........+...|..+++.....++||||++++.++.+++.|+..|+.+..+||++++.+|..+++.|++|+++|||||
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT 302 (434)
T PRK11192 223 YYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT 302 (434)
T ss_pred EEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc
Confidence 44454456788888888887677899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 012728 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~ 375 (457)
+++++|+|+|++++||+||+|.+...|+||+||+||.|..|.++++++..|...+..+.+
T Consensus 303 d~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~ 362 (434)
T PRK11192 303 DVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIER 362 (434)
T ss_pred cccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998887777654
No 22
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-53 Score=388.91 Aligned_cols=340 Identities=22% Similarity=0.316 Sum_probs=280.3
Q ss_pred cCCCCC--hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---------CC--eEE
Q 012728 16 KNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PG--IVL 82 (457)
Q Consensus 16 ~~~~~~--l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---------~~--~~l 82 (457)
.|++++ |++++..++.. +||..+||.|..+||.+++++|+.+.++||||||++|++|++.. .+ -++
T Consensus 5 ~~~~l~~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred chhhcCCCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 344444 66999999998 79999999999999999999999999999999999999998752 22 589
Q ss_pred EEcchHHHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh----
Q 012728 83 VVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI---- 153 (457)
Q Consensus 83 vl~P~~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~---- 153 (457)
||+|||+|+.|+.+.+..+ .+.+..+.++......-. ...... .+| +++|||++.++...
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~---~fkee~--~nI------lVgTPGRL~di~~~~~~~ 152 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIK---TFKEEG--PNI------LVGTPGRLLDILQREAEK 152 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHH---HHHHhC--CcE------EEeCchhHHHHHhchhhh
Confidence 9999999999998887664 334555655544333222 222222 223 67788888888654
Q ss_pred hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCC---
Q 012728 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR--- 229 (457)
Q Consensus 154 ~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 229 (457)
.+...+.++|+||||+++++|+ . ..+..|+..+| +++.=+||||...++.. ....++.+|+.+......
T Consensus 153 l~~rsLe~LVLDEADrLldmgF--e---~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~ 225 (567)
T KOG0345|consen 153 LSFRSLEILVLDEADRLLDMGF--E---ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSA 225 (567)
T ss_pred ccccccceEEecchHhHhcccH--H---HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeeccccccc
Confidence 5566799999999999999995 4 66777888888 67888999999999877 566688999876543322
Q ss_pred ----CceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHH
Q 012728 230 ----PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDD 303 (457)
Q Consensus 230 ----~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~ 303 (457)
-..+|.+... ..|+..+.+++.....+++|||.+|...++..+..|... ..++..+||.|+++.|..+++.
T Consensus 226 tPS~L~~~Y~v~~a---~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~ 302 (567)
T KOG0345|consen 226 TPSSLALEYLVCEA---DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEA 302 (567)
T ss_pred CchhhcceeeEecH---HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHH
Confidence 2233333333 589999999999999999999999999999999988875 6788999999999999999999
Q ss_pred HhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012728 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 304 f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
|.+..-.+|+|||+++||+|||++++||+||+|.++..|+||+||+||.|+.|.+++|+.+.+..+...+--+.
T Consensus 303 F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~ 376 (567)
T KOG0345|consen 303 FRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIKG 376 (567)
T ss_pred HHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhcC
Confidence 99988889999999999999999999999999999999999999999999999999999998888877766553
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.6e-53 Score=421.16 Aligned_cols=350 Identities=18% Similarity=0.250 Sum_probs=274.6
Q ss_pred ccccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------
Q 012728 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------- 77 (457)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----------- 77 (457)
+..+....|.++++++.+.++|.+ +||.+|+++|.++++.+++|+|+++.+|||||||++|++|++..
T Consensus 81 ~~~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~ 159 (475)
T PRK01297 81 EPQEGKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERY 159 (475)
T ss_pred CCccCCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccc
Confidence 344556789999999999999998 79999999999999999999999999999999999999998753
Q ss_pred --CCeEEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH
Q 012728 78 --PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK 151 (457)
Q Consensus 78 --~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~ 151 (457)
..++|||+||++|+.|+.+.++.+ +.....+.++....... ..+... ..+++++||+.+ ..+.
T Consensus 160 ~~~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~--~~~Iiv~TP~~L------l~~~ 228 (475)
T PRK01297 160 MGEPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEAR--FCDILVATPGRL------LDFN 228 (475)
T ss_pred cCCceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCC--CCCEEEECHHHH------HHHH
Confidence 368999999999999999988875 34444444443322221 222222 256666665544 3332
Q ss_pred h--hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC
Q 012728 152 K--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS 226 (457)
Q Consensus 152 ~--~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~ 226 (457)
. ...+.++++|||||+|.+.+++ |.+. +..+...++ +.+++++|||++.........++ .++..+...
T Consensus 229 ~~~~~~l~~l~~lViDEah~l~~~~--~~~~---l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~ 301 (475)
T PRK01297 229 QRGEVHLDMVEVMVLDEADRMLDMG--FIPQ---VRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIE 301 (475)
T ss_pred HcCCcccccCceEEechHHHHHhcc--cHHH---HHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc--cCCEEEEec
Confidence 2 3346678999999999999877 5544 444455444 57899999999988766444443 344443222
Q ss_pred C---CCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHH
Q 012728 227 F---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (457)
Q Consensus 227 ~---~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~ 303 (457)
. ...++...+.... ..++...+..++......++||||++++.++.+++.|.+.|+.+..+||++++++|.++++.
T Consensus 302 ~~~~~~~~~~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~ 380 (475)
T PRK01297 302 PENVASDTVEQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEG 380 (475)
T ss_pred cCcCCCCcccEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHH
Confidence 1 1222322222222 24567778888887777899999999999999999999999999999999999999999999
Q ss_pred HhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012728 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 304 f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
|++|+++|||||+++++|||+|++++||+|++|.|..+|+||+||+||.|+.|.+++|+..+|...+..+.+...
T Consensus 381 Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~ 455 (475)
T PRK01297 381 FREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLG 455 (475)
T ss_pred HhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999988877777765544
No 24
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=1.8e-53 Score=395.37 Aligned_cols=344 Identities=22% Similarity=0.307 Sum_probs=283.2
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc--------------
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------- 76 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~-------------- 76 (457)
.....+|++.+++.++++.+.+ .||..|+|+|..++|..+..+|+|.+|.||||||++|++|++.
T Consensus 241 pnplrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 241 PNPLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred CccccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 3456789999999999999987 6999999999999999999999999999999999999988762
Q ss_pred -CCCeEEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-
Q 012728 77 -KPGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL- 150 (457)
Q Consensus 77 -~~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l- 150 (457)
.++.++++.|||+|++|+.++-.++ |+....+.++....... +++--++..+++||+++.+.
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~------------fqls~gceiviatPgrLid~L 387 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG------------FQLSMGCEIVIATPGRLIDSL 387 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh------------hhhhccceeeecCchHHHHHH
Confidence 2789999999999999998887764 44444444444433321 34444455578888887666
Q ss_pred -HhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC------------------------C--ccEEEEeccC
Q 012728 151 -KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP------------------------D--VPILALTATA 203 (457)
Q Consensus 151 -~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~------------------------~--~~~v~lSAT~ 203 (457)
..+..++...+||+|||+++.++| |++.+..+ +.++| + .|.+.||||+
T Consensus 388 enr~lvl~qctyvvldeadrmiDmg--fE~dv~~i---L~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm 462 (673)
T KOG0333|consen 388 ENRYLVLNQCTYVVLDEADRMIDMG--FEPDVQKI---LEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATM 462 (673)
T ss_pred HHHHHHhccCceEeccchhhhhccc--ccHHHHHH---HHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCC
Confidence 345566778899999999999999 77776554 33332 1 4789999999
Q ss_pred ChhHHHHHHHHcCCCCCeEEecCC---CCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHh
Q 012728 204 APKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (457)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~ 280 (457)
++.+...... .+.+|+.+...+ ..+-+...+..... +.+...|.++++.....++|||+|+++.|+.+++.|.+
T Consensus 463 ~p~verlar~--ylr~pv~vtig~~gk~~~rveQ~v~m~~e-d~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK 539 (673)
T KOG0333|consen 463 PPAVERLARS--YLRRPVVVTIGSAGKPTPRVEQKVEMVSE-DEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEK 539 (673)
T ss_pred ChHHHHHHHH--HhhCCeEEEeccCCCCccchheEEEEecc-hHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhh
Confidence 9999874444 346777665543 23344555555443 45689999999999889999999999999999999999
Q ss_pred CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEE
Q 012728 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (457)
Q Consensus 281 ~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~ 360 (457)
.|+.+..|||+-++++|...++.|++|..+||||||++++|||+|+|++||+||+++|+++|.||+||+||+|+.|.+++
T Consensus 540 ~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiS 619 (673)
T KOG0333|consen 540 AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAIS 619 (673)
T ss_pred ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccchHHHHHHHHH
Q 012728 361 YYGMDDRRRMEFILS 375 (457)
Q Consensus 361 ~~~~~~~~~~~~i~~ 375 (457)
|+++.|...+..+..
T Consensus 620 flt~~dt~v~ydLkq 634 (673)
T KOG0333|consen 620 FLTPADTAVFYDLKQ 634 (673)
T ss_pred EeccchhHHHHHHHH
Confidence 999999665554443
No 25
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.5e-54 Score=381.20 Aligned_cols=351 Identities=20% Similarity=0.246 Sum_probs=272.4
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcc
Q 012728 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P 86 (457)
....|+.+|+++++.+.++. +|+.+|+|+|..|+|.++.|+|++.+|.||||||.+|.+|++++ +--++|++|
T Consensus 5 t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTP 83 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTP 83 (442)
T ss_pred ccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecc
Confidence 46789999999999999998 79999999999999999999999999999999999999999986 567999999
Q ss_pred hHHHHHHHHHHHHHcCCc----eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh------hhhc
Q 012728 87 LIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK------IHSR 156 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~------~~~~ 156 (457)
||+|+.|..+.|..+|.. ...+.++...- ........+ .++ +++|||++..+.+ ...+
T Consensus 84 TrELA~QiaEQF~alGk~l~lK~~vivGG~d~i----~qa~~L~~r--PHv------VvatPGRlad~l~sn~~~~~~~~ 151 (442)
T KOG0340|consen 84 TRELALQIAEQFIALGKLLNLKVSVIVGGTDMI----MQAAILSDR--PHV------VVATPGRLADHLSSNLGVCSWIF 151 (442)
T ss_pred hHHHHHHHHHHHHHhcccccceEEEEEccHHHh----hhhhhcccC--CCe------EecCccccccccccCCccchhhh
Confidence 999999999999886543 44444333222 122222223 344 4555555544422 2335
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC-ccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---CCce
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL 232 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i 232 (457)
.++.++|+||||.+++-.+. ..+..+....|. +|.++||||+++.................+..... ...+
T Consensus 152 ~rlkflVlDEADrvL~~~f~-----d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL 226 (442)
T KOG0340|consen 152 QRLKFLVLDEADRVLAGCFP-----DILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETL 226 (442)
T ss_pred hceeeEEecchhhhhccchh-----hHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhh
Confidence 56899999999999886543 556666777774 59999999999887653322222111222222111 1122
Q ss_pred EEEEEEeCchhhHHHHHHHHHHh---cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCc
Q 012728 233 FYEVRYKDLLDDAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (457)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~ 309 (457)
+..+..... ..+-..|...++. ...+.++||+|+..+|+.++..|+..++.+..+||-|++++|...+.+|+++..
T Consensus 227 ~q~yI~~~~-~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~ 305 (442)
T KOG0340|consen 227 YQGYILVSI-DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAA 305 (442)
T ss_pred hhheeecch-hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCc
Confidence 222222211 2333344444443 356789999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCC
Q 012728 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382 (457)
Q Consensus 310 ~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 382 (457)
+||||||++++|+|||.|++|||||.|.++.+|+||+||++|+|+.|.++.+++..|.+.+..+++..+.+-.
T Consensus 306 ~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~ 378 (442)
T KOG0340|consen 306 RILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLT 378 (442)
T ss_pred cEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988776544
No 26
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=8.8e-54 Score=395.49 Aligned_cols=345 Identities=20% Similarity=0.259 Sum_probs=277.8
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC----------CCe
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGI 80 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----------~~~ 80 (457)
...+..|+...|++...+++++ +||.+++++|+..++.++.|+|+++.|.||+|||++|++|+++. +-.
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 4446778899999999999998 79999999999999999999999999999999999999999753 446
Q ss_pred EEEEcchHHHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--
Q 012728 81 VLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-- 153 (457)
Q Consensus 81 ~lvl~P~~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~-- 153 (457)
++|+||||+|+.|...+++.+ ++......++...... .+.+.. . +++ +++|||++.++...
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e---~~kl~k-~--~ni------liATPGRLlDHlqNt~ 224 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVE---ADKLVK-G--CNI------LIATPGRLLDHLQNTS 224 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHH---HHHhhc-c--ccE------EEeCCchHHhHhhcCC
Confidence 999999999999999888773 2333333333322221 111211 1 333 67778887776432
Q ss_pred -hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCC--
Q 012728 154 -HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR-- 229 (457)
Q Consensus 154 -~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 229 (457)
....+++++|+||||++++.| |+.. +..+...+| +.|.++||||.++++.+...-.+. .++..+......
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~d---i~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~-~d~~~v~~~d~~~~ 298 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEED---VEQIIKILPKQRQTLLFSATQPSKVKDLARGALK-RDPVFVNVDDGGER 298 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHH---HHHHHHhccccceeeEeeCCCcHHHHHHHHHhhc-CCceEeecCCCCCc
Confidence 223457899999999999999 6644 555555556 789999999999999775444444 367766543221
Q ss_pred ---CceEEEEEEeCchhhHHHHHHHHHHhcCC-ccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh
Q 012728 230 ---PNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (457)
Q Consensus 230 ---~~i~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~ 305 (457)
..+...+...+. +..+..+..+++++.. .++||||+|...+..+++.|+...++|..+||+.++..|..+..+|+
T Consensus 299 ~The~l~Qgyvv~~~-~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ 377 (543)
T KOG0342|consen 299 ETHERLEQGYVVAPS-DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFC 377 (543)
T ss_pred chhhcccceEEeccc-cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHh
Confidence 122333333332 3457888899988766 89999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHH
Q 012728 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (457)
Q Consensus 306 ~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~ 375 (457)
+.+..||+|||+++||+|+|+|++||+||+|.++++|+||+||+||.|..|.+++++.+.|...++.+.+
T Consensus 378 kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 378 KAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred hcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998873
No 27
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-53 Score=379.63 Aligned_cols=347 Identities=21% Similarity=0.315 Sum_probs=280.1
Q ss_pred cccCCC-CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------------CCe
Q 012728 14 TQKNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGI 80 (457)
Q Consensus 14 ~~~~~~-~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------------~~~ 80 (457)
.+.|++ +...+++...+++ .||.+|+|+|.+++|.++.|.|++.+|.||+|||++|++|.+.+ ++.
T Consensus 218 ~ctFddAFq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~ 296 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPG 296 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCc
Confidence 444443 5677899999998 69999999999999999999999999999999999999987643 678
Q ss_pred EEEEcchHHHHHHHHHHHHHc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhh
Q 012728 81 VLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (457)
Q Consensus 81 ~lvl~P~~~L~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~ 155 (457)
+|+++||++|+.|.--+..++ |.....+.++...... ...+..+ +.+ +++||++++++. +..+
T Consensus 297 ~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---vei------iiatPgrlndL~~~n~i~ 364 (629)
T KOG0336|consen 297 VLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEI------IIATPGRLNDLQMDNVIN 364 (629)
T ss_pred eEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceE------EeeCCchHhhhhhcCeee
Confidence 999999999999877766653 4444444444333222 2222222 333 667778887773 4566
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE-ecCCCCCce--
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNL-- 232 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i-- 232 (457)
+..+.+||+||||+|+++| |++.+..+ ++...|+.|+++.|||+|+.+.+.... .+.+|+++ ..+.+....
T Consensus 365 l~siTYlVlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~s--Y~Kep~~v~vGsLdL~a~~s 438 (629)
T KOG0336|consen 365 LASITYLVLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQS--YLKEPMIVYVGSLDLVAVKS 438 (629)
T ss_pred eeeeEEEEecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHH--hhhCceEEEecccceeeeee
Confidence 7789999999999999999 77777665 667778999999999999999884444 45677654 334433221
Q ss_pred EEEEEEeCchhhHHHHHHHHHHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceE
Q 012728 233 FYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (457)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 311 (457)
.-.........+++..+..+++.. ...++||||.++..|..|...|.-.|+.+-.+||+-++.+|+..++.|++|+++|
T Consensus 439 VkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrI 518 (629)
T KOG0336|consen 439 VKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRI 518 (629)
T ss_pred eeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEE
Confidence 111224444467888888887774 5678999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 312 LvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
|||||.+++|+|+|++.||++||+|.++++|+||+||+||+|+.|.+++|++.+|......+++-...
T Consensus 519 LvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 519 LVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred EEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888877765543
No 28
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-52 Score=389.96 Aligned_cols=343 Identities=22% Similarity=0.313 Sum_probs=281.2
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC----------CCeE
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIV 81 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----------~~~~ 81 (457)
.....|++++++..+.+.|++ .+|..++.+|.++||..+.|+|++..|.||||||++|++|.+++ +--+
T Consensus 66 ~~~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCcee
Confidence 345689999999999999998 59999999999999999999999999999999999999999864 5579
Q ss_pred EEEcchHHHHHHHHHHHHHcCCc----eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hh
Q 012728 82 LVVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IH 154 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~ 154 (457)
|||+|||+||.|+++.+.+.|.. +..+.++......... +. .++| +++|||++..... ..
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eR---i~----~mNI------LVCTPGRLLQHmde~~~f 211 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELER---IS----QMNI------LVCTPGRLLQHMDENPNF 211 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHh---hh----cCCe------EEechHHHHHHhhhcCCC
Confidence 99999999999999999996543 3333333322211111 11 2555 4556666555522 23
Q ss_pred hcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC----CC
Q 012728 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NR 229 (457)
Q Consensus 155 ~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 229 (457)
+-.++.++|+||||+++++|+ . ..+..+...+| ..|.++||||.+..+.. ...+.+.+|.++.... ..
T Consensus 212 ~t~~lQmLvLDEADR~LDMGF--k---~tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~at 284 (758)
T KOG0343|consen 212 STSNLQMLVLDEADRMLDMGF--K---KTLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAAT 284 (758)
T ss_pred CCCcceEEEeccHHHHHHHhH--H---HHHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccC
Confidence 445689999999999999995 4 66778888888 78999999999999877 6667788888775441 11
Q ss_pred C-ceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhc
Q 012728 230 P-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWIS 306 (457)
Q Consensus 230 ~-~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~ 306 (457)
| ++...+...+ .++|+..|..+++.+...+.|||+.|.+++..+++.+.++ |+++..+||.|++..|..++.+|..
T Consensus 285 P~~L~Q~y~~v~-l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 285 PSNLQQSYVIVP-LEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred hhhhhheEEEEe-hhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH
Confidence 2 2222222222 2589999999999999999999999999999999999986 8899999999999999999999999
Q ss_pred CCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHH-HHHHHh
Q 012728 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSK 376 (457)
Q Consensus 307 g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~-~~i~~~ 376 (457)
.+..||+|||+++||+|+|.|++||++|.|.++.+|+||+||++|.+..|.+++++.+.+.+.+ ..+.++
T Consensus 364 ~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 364 KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999999985544 444444
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-51 Score=406.14 Aligned_cols=344 Identities=20% Similarity=0.285 Sum_probs=267.1
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcch
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~ 87 (457)
...|+++++++.+.+++.+ +||..|+|+|.++++.+++|+|++++||||+|||++|++|++.. +.++||++|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 4779999999999999997 79999999999999999999999999999999999999988753 5689999999
Q ss_pred HHHHHHHHHHHHHcCC----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--hhhhcCCccE
Q 012728 88 IALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNL 161 (457)
Q Consensus 88 ~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~--~~~~~~~l~~ 161 (457)
++|+.|+.+.+..++. ......++..... ....+.. ..+++++||+ .+..+. ....+.++++
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~Ivv~Tp~------~l~~~l~~~~~~l~~i~l 173 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKA---GVHMVVGTPG------RVYDMIDKRHLRVDDLKL 173 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcC---CCCEEEECcH------HHHHHHHhCCcccccccE
Confidence 9999999988887542 2222222222111 1122221 2456555554 433332 2334667999
Q ss_pred EEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEec---CCCCCceEEEEE
Q 012728 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVR 237 (457)
Q Consensus 162 lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~ 237 (457)
||+||||++.+++ |+. .+..+.... ++.|++++|||+++.........+ .++..+.. ......+...+.
T Consensus 174 vViDEah~~~~~~--~~~---~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 246 (401)
T PTZ00424 174 FILDEADEMLSRG--FKG---QIYDVFKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIRQFYV 246 (401)
T ss_pred EEEecHHHHHhcc--hHH---HHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCceEEEE
Confidence 9999999998877 443 334444444 478999999999987765444433 33333221 122233333333
Q ss_pred EeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 012728 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (457)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 317 (457)
.......+...+..+++.....++||||+++..++.+++.|+..++.+..+||++++.+|..+++.|++|+++|||||++
T Consensus 247 ~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~ 326 (401)
T PTZ00424 247 AVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDL 326 (401)
T ss_pred ecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEccc
Confidence 33333446667777777767778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012728 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 318 ~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
+++|+|+|++++||++|+|.+..+|+||+||+||.|+.|.|++++++++.+.++.+.+..
T Consensus 327 l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~ 386 (401)
T PTZ00424 327 LARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHY 386 (401)
T ss_pred ccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988888776544
No 30
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.2e-53 Score=369.30 Aligned_cols=350 Identities=22% Similarity=0.302 Sum_probs=286.0
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEc
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~ 85 (457)
...+.|+++.|.++++..+-+ .||+.|+|+|+++||.++.|+|+++.|..|+|||.+|++|.+++ .-.++|++
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilV 160 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILV 160 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEe
Confidence 345689999999999999998 59999999999999999999999999999999999999999986 34689999
Q ss_pred chHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCc
Q 012728 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l 159 (457)
|||+||.|....++.+ ++.+....++.... +++ .++--+.+.+++|||++.++.+ ...++..
T Consensus 161 PtrelALQtSqvc~~lskh~~i~vmvttGGT~lr------DDI------~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c 228 (459)
T KOG0326|consen 161 PTRELALQTSQVCKELSKHLGIKVMVTTGGTSLR------DDI------MRLNQTVHLVVGTPGRILDLAKKGVADLSDC 228 (459)
T ss_pred ecchhhHHHHHHHHHHhcccCeEEEEecCCcccc------cce------eeecCceEEEEcCChhHHHHHhcccccchhc
Confidence 9999999988877764 44454444444321 111 2333333447788888888844 3456667
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe--cCCCCCce--EE
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNL--FY 234 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i--~~ 234 (457)
.++|+||||.+++.. |. ..+..+...+| +.|++++|||.|..+...+.+.+ .+|..+. .+.....+ +|
T Consensus 229 ~~lV~DEADKlLs~~--F~---~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyY 301 (459)
T KOG0326|consen 229 VILVMDEADKLLSVD--FQ---PIVEKLISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYY 301 (459)
T ss_pred eEEEechhhhhhchh--hh---hHHHHHHHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhhe
Confidence 899999999998755 44 44566677777 78999999999999887666655 4444433 22222222 44
Q ss_pred EEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEE
Q 012728 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (457)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 314 (457)
.+... .+|+.-|..++..-.-...||||||.+.++.++....+.|++|+++|+.|.+++|..++..|++|.++.|||
T Consensus 302 afV~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVc 378 (459)
T KOG0326|consen 302 AFVEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVC 378 (459)
T ss_pred eeech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeee
Confidence 44433 357777777776666667899999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCCCCc
Q 012728 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384 (457)
Q Consensus 315 T~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 384 (457)
||.+-||||++.+++||+||+|++.++|+||+||+||.|..|.++.+++-+|...+..++.+.+.+....
T Consensus 379 tDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pi 448 (459)
T KOG0326|consen 379 TDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPI 448 (459)
T ss_pred hhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999887765443
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-52 Score=385.87 Aligned_cols=354 Identities=20% Similarity=0.261 Sum_probs=273.0
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------------C
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------P 78 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------------~ 78 (457)
.-....|..++|++.+...|+..+++..|+.+|.++||.+++|+|++|.++||||||++|++|+++. +
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 3456789999999999999999999999999999999999999999999999999999999998753 7
Q ss_pred CeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcH--HHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---h
Q 012728 79 GIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM--QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---I 153 (457)
Q Consensus 79 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~ 153 (457)
..+||++|||+||.|.++.+.++......+-.+... ..+......+..+ ++| +|+|||++.+... .
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG---iNI------LIgTPGRLvDHLknT~~ 282 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG---INI------LIGTPGRLVDHLKNTKS 282 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC---ceE------EEcCchHHHHHHhccch
Confidence 789999999999999999999975554443333211 1111111122221 344 6677777666532 3
Q ss_pred hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-----------CccEEEEeccCChhHHHHHHHHcCCCCCeE
Q 012728 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-----------DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (457)
Q Consensus 154 ~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~ 222 (457)
+...++++||+||+|++++.| |+..+.+|..+....+ ..+.+++|||++..+.+ ...+.+.+|..
T Consensus 283 i~~s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~ 358 (708)
T KOG0348|consen 283 IKFSRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVY 358 (708)
T ss_pred heeeeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCcee
Confidence 445669999999999999999 7777777666664321 35689999999999877 67778888888
Q ss_pred EecCCCCC----------------------------ceEEEEEEeCchh---hHHHHHHHHHHhcCCccEEEEeCCcccH
Q 012728 223 LKSSFNRP----------------------------NLFYEVRYKDLLD---DAYADLCSVLKANGDTCAIVYCLERTTC 271 (457)
Q Consensus 223 ~~~~~~~~----------------------------~i~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~iIf~~s~~~~ 271 (457)
+....... ++...+...+... .....|....+.....++|||..+.+.+
T Consensus 359 I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 359 ISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred eeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 76211000 0111111111101 1122234444555667899999999999
Q ss_pred HHHHHHHHhC----------------------CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccE
Q 012728 272 DELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (457)
Q Consensus 272 ~~l~~~L~~~----------------------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~ 329 (457)
+.-++.|... +.+++.+||+|++++|..+++.|...+-.||+|||+++||+|+|+|++
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9988887642 235789999999999999999999988889999999999999999999
Q ss_pred EEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012728 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 330 Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
||.||+|.++.+|+||+||++|.|..|.+++|+.+.|.++++.+..+.
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~~ 566 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKHH 566 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999877766543
No 32
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1e-49 Score=412.50 Aligned_cols=343 Identities=19% Similarity=0.194 Sum_probs=251.6
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHHHHH
Q 012728 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMEN 93 (457)
Q Consensus 19 ~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L~~q 93 (457)
+..+++++.++|++ .||++|+++|.++++.+++|+|+++.+|||||||++|++|+++. +.++||++||++|+.|
T Consensus 18 ~~~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q 96 (742)
T TIGR03817 18 PAWAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAAD 96 (742)
T ss_pred CCcCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHH
Confidence 34588999999997 69999999999999999999999999999999999999998853 5689999999999999
Q ss_pred HHHHHHHcC---CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccc
Q 012728 94 QVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (457)
Q Consensus 94 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (457)
+.+.++.++ +....+.+......+.. +.. ..+++++||+.+..............+.++++|||||||.+
T Consensus 97 ~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~----i~~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~ 169 (742)
T TIGR03817 97 QLRAVRELTLRGVRPATYDGDTPTEERRW----ARE---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSY 169 (742)
T ss_pred HHHHHHHhccCCeEEEEEeCCCCHHHHHH----Hhc---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhc
Confidence 999999864 44444555554433221 111 26788888876532110000011123567999999999998
Q ss_pred cc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC-CCCceEEEEEEeC-------
Q 012728 171 SS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKD------- 240 (457)
Q Consensus 171 ~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~------- 240 (457)
.+ +|..+...+.++.++....+ +.|++++|||+++... . ...+......++.... ........+....
T Consensus 170 ~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~-~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 170 RGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-A-ASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGE 247 (742)
T ss_pred cCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-H-HHHHcCCCeEEECCCCCCcCceEEEEecCCccccccc
Confidence 54 23233444455555555554 6799999999998753 2 3333322222222211 1111221111110
Q ss_pred --------chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--------CCceEeecCCCCHHHHHHHHHHH
Q 012728 241 --------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDW 304 (457)
Q Consensus 241 --------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--------g~~~~~~~~~~~~~~r~~~~~~f 304 (457)
...++...+..+++. +.++||||+|++.++.++..|++. +..+..|||++++++|..++++|
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred cccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 112344555566654 568999999999999999988763 56788999999999999999999
Q ss_pred hcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEecc--chHHHHHHH
Q 012728 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM--DDRRRMEFI 373 (457)
Q Consensus 305 ~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~--~~~~~~~~i 373 (457)
++|++++||||+++++|||+|++++||+|+.|.+..+|+||+|||||.|+.|.++++... .|...+..+
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~ 396 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHP 396 (742)
T ss_pred HcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCH
Confidence 999999999999999999999999999999999999999999999999999999998864 344444433
No 33
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-50 Score=367.06 Aligned_cols=341 Identities=22% Similarity=0.309 Sum_probs=276.5
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------------CCeE
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIV 81 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------------~~~~ 81 (457)
...|++++|++-+.+++.+ .||..|+-+|+.+||.+++|+|++..|.||||||++|++|+++. +..+
T Consensus 18 ~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa 96 (569)
T KOG0346|consen 18 EKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSA 96 (569)
T ss_pred hccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccccee
Confidence 3689999999999999998 69999999999999999999999999999999999999999863 6789
Q ss_pred EEEcchHHHHHHHHHHHHHc------CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--
Q 012728 82 LVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-- 153 (457)
Q Consensus 82 lvl~P~~~L~~q~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~-- 153 (457)
+|++||++||.|.+..+.++ .+.+.-+.+..+..... .+.... .+| +++||+.+..+...
T Consensus 97 ~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~----~~L~d~--pdI------vV~TP~~ll~~~~~~~ 164 (569)
T KOG0346|consen 97 VILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS----VALMDL--PDI------VVATPAKLLRHLAAGV 164 (569)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH----HHHccC--CCe------EEeChHHHHHHHhhcc
Confidence 99999999999998887763 22233333333333222 222333 233 66777776665432
Q ss_pred -hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---
Q 012728 154 -HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--- 228 (457)
Q Consensus 154 -~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~--- 228 (457)
.....+.++|+||||.++++|+ + ..+..+...+| ..|-++||||++.++.. .+.+.+.+|+++.....
T Consensus 165 ~~~~~~l~~LVvDEADLllsfGY--e---edlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~el~ 237 (569)
T KOG0346|consen 165 LEYLDSLSFLVVDEADLLLSFGY--E---EDLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEGELP 237 (569)
T ss_pred chhhhheeeEEechhhhhhhccc--H---HHHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccccCC
Confidence 3355689999999999999994 3 66777788887 68899999999999877 77888899998764321
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC
Q 012728 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g 307 (457)
.++....+......++++..+..+++-. -.++.|||+|+.+.+.++.-.|.+-|++..+++|.++.+-|.-++++|..|
T Consensus 238 ~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG 317 (569)
T KOG0346|consen 238 NPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG 317 (569)
T ss_pred CcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc
Confidence 1222223333333568888888777653 467799999999999999999999999999999999999999999999999
Q ss_pred CceEEEEec-----------------------------------cccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC
Q 012728 308 RKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (457)
Q Consensus 308 ~~~vLvaT~-----------------------------------~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~ 352 (457)
-++++|||| -.+||||+.+|..|+|||+|.++..|+||+||++|+
T Consensus 318 ~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg 397 (569)
T KOG0346|consen 318 LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARG 397 (569)
T ss_pred ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccC
Confidence 999999997 357999999999999999999999999999999999
Q ss_pred CCCceEEEEeccchHHHHHHHH
Q 012728 353 QLPSKSLLYYGMDDRRRMEFIL 374 (457)
Q Consensus 353 g~~g~~~~~~~~~~~~~~~~i~ 374 (457)
+++|.++.|+.+.+..-...+.
T Consensus 398 ~n~GtalSfv~P~e~~g~~~le 419 (569)
T KOG0346|consen 398 NNKGTALSFVSPKEEFGKESLE 419 (569)
T ss_pred CCCCceEEEecchHHhhhhHHH
Confidence 9999999999999887444443
No 34
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-49 Score=371.68 Aligned_cols=345 Identities=21% Similarity=0.317 Sum_probs=272.1
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC----------------CC
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----------------~~ 79 (457)
.|....+.+.+...++. .|+..|+|+|+.++|.+..|++.+++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 67777888889888886 69999999999999999999999999999999999999999752 37
Q ss_pred eEEEEcchHHHHHHHHHHHHHcC----CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--h
Q 012728 80 IVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--I 153 (457)
Q Consensus 80 ~~lvl~P~~~L~~q~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~ 153 (457)
.++|++|||+|+.|.+++.+++. ........+..... ....+ ...+++ +++|||++.++.+ .
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~---q~~~~---~~gcdI------lvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA---QLRFI---KRGCDI------LVATPGRLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh---hhhhh---ccCccE------EEecCchhhhhhhcce
Confidence 89999999999999999999842 22222332221111 11111 112444 6677788877744 3
Q ss_pred hhcCCccEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC--CccEEEEeccCChhHHHHHHHHcCCCCCeEE---ecCC
Q 012728 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVL---KSSF 227 (457)
Q Consensus 154 ~~~~~l~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~---~~~~ 227 (457)
..+.+++++|+||||+|++ +| |.|.+..+..-..+.+ +.|.++||||.+..........+ ..+.+.+ ....
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl-~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFL-KDNYIFLAVGRVGS 298 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHh-hccceEEEEeeecc
Confidence 4566688999999999998 77 6666655544333332 78999999999999877444333 2323332 3456
Q ss_pred CCCceEEEEEEeCchhhHHHHHHHHHHhcC----Cc-----cEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 012728 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (457)
Q Consensus 228 ~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~----~~-----~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~ 298 (457)
...++...+...... .+...|.+++.... .+ +++|||.+++.+..++..|...++++..+||+.++.+|.
T Consensus 299 ~~~ni~q~i~~V~~~-~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 TSENITQKILFVNEM-EKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred ccccceeEeeeecch-hhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 677787777776543 45566666665322 23 799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhc
Q 012728 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 299 ~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~ 377 (457)
+.++.|++|++.+||||++++||+|+|+|++||+||+|.+..+|+||+||+||.|+.|.+..|++..+....+.+.+-.
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999977766666555443
No 35
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-48 Score=347.91 Aligned_cols=353 Identities=20% Similarity=0.243 Sum_probs=282.8
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhhcC------CCeEE
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVL 82 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l~~------~~~~l 82 (457)
..+...|+++.|.+++.+.+.. ++|..|+.+|+.++|.++.. +|+|.++..|+|||.+|.+.+|.+ .+.++
T Consensus 86 lyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~i 164 (477)
T KOG0332|consen 86 LYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCI 164 (477)
T ss_pred ccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCce
Confidence 5677899999999999999997 89999999999999999975 899999999999999999999976 67899
Q ss_pred EEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCc
Q 012728 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLL 159 (457)
Q Consensus 83 vl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l 159 (457)
+|+|+++||.|..+.+...|........-...+.. ......-..+|+ +.||+-+.++ .+......+
T Consensus 165 CLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk-----~~rG~~i~eqIv------iGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 165 CLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK-----AKRGNKLTEQIV------IGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred eeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc-----cccCCcchhhee------eCCCccHHHHHHHHHhhChhhc
Confidence 99999999999999999987655221111110000 000111124444 4455544444 234456678
Q ss_pred cEEEEeccccccc-cCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEec-CCCCCceEEEE
Q 012728 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEV 236 (457)
Q Consensus 160 ~~lViDEah~~~~-~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~ 236 (457)
+.+|+|||+.+.+ .|+ . ..-.++....| +.|++++|||....+.......+--.++..+.. .....+++...
T Consensus 234 kvfVlDEAD~Mi~tqG~--~---D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQly 308 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQGF--Q---DQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLY 308 (477)
T ss_pred eEEEecchhhhhhcccc--c---ccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhe
Confidence 9999999999975 342 2 33445666667 899999999999998886666554444554443 46677777766
Q ss_pred EEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012728 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 237 ~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
......++|++.|.++.....-+..||||.|+..+..++..|.+.|+.|..+||+|.-.+|..++++|+.|..+|||+|+
T Consensus 309 v~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn 388 (477)
T KOG0332|consen 309 VLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN 388 (477)
T ss_pred eeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec
Confidence 66777789999999988777778899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEecCCC------CHHHHHHHhcccCCCCCCceEEEEeccc-hHHHHHHHHHhcccC
Q 012728 317 AFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKNQSK 380 (457)
Q Consensus 317 ~~~~Gldip~v~~Vi~~~~p~------s~~~~~Qr~GRagR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~ 380 (457)
+++||+|++.|++||+||+|. +.++|+||+||+||.|+.|.++.+++.+ ..+.+..|.+.-...
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 999999999999999999995 6899999999999999999999888765 566666666655433
No 36
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-48 Score=361.96 Aligned_cols=355 Identities=21% Similarity=0.283 Sum_probs=267.3
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC---------------
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~--------------- 77 (457)
...|..++++.+++++|.+ +||..|+++|...+|.+..| .|++..|.||||||++|-+|++++
T Consensus 180 vsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred hHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 3468899999999999998 79999999999999999998 799999999999999999999872
Q ss_pred ----CCeEEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHH
Q 012728 78 ----PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149 (457)
Q Consensus 78 ----~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~ 149 (457)
.+..||++|||+||.|+...+... ++.+..+.++........+. +..+++ +++|||++..
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL----~~~p~I--------VVATPGRlwe 326 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLL----NQRPDI--------VVATPGRLWE 326 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHH----hcCCCE--------EEecchHHHH
Confidence 234999999999999999888874 44455555555444433332 223333 7888888777
Q ss_pred HHh-----hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH--HhCCCccEEEEeccCChhH---------------
Q 012728 150 LKK-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NYLPDVPILALTATAAPKV--------------- 207 (457)
Q Consensus 150 l~~-----~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~--~~~~~~~~v~lSAT~~~~~--------------- 207 (457)
+.. ..++..+.++|+||+|+|.+.|+ |...-..+..+. ...+..|.+.||||++-..
T Consensus 327 li~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~ 405 (731)
T KOG0347|consen 327 LIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKED 405 (731)
T ss_pred HHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhh
Confidence 632 33456689999999999999886 544433333332 1223679999999976422
Q ss_pred -----HHHHHHHcCCCC-CeEEecCCCCCc---eEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHH
Q 012728 208 -----QKDVMESLCLQN-PLVLKSSFNRPN---LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL 278 (457)
Q Consensus 208 -----~~~~~~~~~~~~-~~~~~~~~~~~~---i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L 278 (457)
.+.+...+++.. |.++........ +.......+ ..++--.|.-++.. -++++|||||+++.+.+|+..|
T Consensus 406 ~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~-~~eKD~ylyYfl~r-yPGrTlVF~NsId~vKRLt~~L 483 (731)
T KOG0347|consen 406 ELNAKIQHLMKKIGFRGKPKIIDLTPQSATASTLTESLIECP-PLEKDLYLYYFLTR-YPGRTLVFCNSIDCVKRLTVLL 483 (731)
T ss_pred hhhHHHHHHHHHhCccCCCeeEecCcchhHHHHHHHHhhcCC-ccccceeEEEEEee-cCCceEEEechHHHHHHHHHHH
Confidence 233444455443 344433221100 000000000 00000011111111 3577999999999999999999
Q ss_pred HhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceE
Q 012728 279 SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (457)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~ 358 (457)
+..+++...+|+.|.++.|.+.+++|++....||||||+++||+|||+|.|||||..|.+.+.|+||.||++|++..|..
T Consensus 484 ~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvs 563 (731)
T KOG0347|consen 484 NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVS 563 (731)
T ss_pred hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchHHHHHHHHHhcccCCCCc
Q 012728 359 LLYYGMDDRRRMEFILSKNQSKNSQS 384 (457)
Q Consensus 359 ~~~~~~~~~~~~~~i~~~~~~~~~~~ 384 (457)
++++.+.+...+..+.+.........
T Consensus 564 vml~~P~e~~~~~KL~ktL~k~~dlp 589 (731)
T KOG0347|consen 564 VMLCGPQEVGPLKKLCKTLKKKEDLP 589 (731)
T ss_pred EEEeChHHhHHHHHHHHHHhhccCCC
Confidence 99999999999999988776665544
No 37
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=6.6e-49 Score=352.33 Aligned_cols=335 Identities=20% Similarity=0.359 Sum_probs=263.3
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc--------------C
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------K 77 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~--------------~ 77 (457)
....+|.++..++.+++.|++. |+.+|+|+|.+.+|.++.|+|++..|-||||||++|.+|++. .
T Consensus 167 PPIksF~eMKFP~~~L~~lk~K-GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~E 245 (610)
T KOG0341|consen 167 PPIKSFKEMKFPKPLLRGLKKK-GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGE 245 (610)
T ss_pred CchhhhhhccCCHHHHHHHHhc-CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCC
Confidence 3567889999999999999995 999999999999999999999999999999999999988652 2
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHc-------CCc---eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH
Q 012728 78 PGIVLVVSPLIALMENQVIGLKEK-------GIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~ 147 (457)
++..+|+||+|+|+.|.++-+..+ |.. .....++......-. .+..+ +.+ +++||+++
T Consensus 246 GP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~---~v~~G---vHi------vVATPGRL 313 (610)
T KOG0341|consen 246 GPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD---VVRRG---VHI------VVATPGRL 313 (610)
T ss_pred CCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH---HHhcC---eeE------EEcCcchH
Confidence 788999999999999988765542 221 111122222222111 11111 333 77888998
Q ss_pred HHHHh--hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe
Q 012728 148 SKLKK--IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (457)
Q Consensus 148 ~~l~~--~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~ 224 (457)
.++.. ..++.-.+++.+||||++.++| |+. .+..+...+. .+|.++||||+|..... +..-.+..|+.+.
T Consensus 314 ~DmL~KK~~sLd~CRyL~lDEADRmiDmG--FEd---dir~iF~~FK~QRQTLLFSATMP~KIQ~--FAkSALVKPvtvN 386 (610)
T KOG0341|consen 314 MDMLAKKIMSLDACRYLTLDEADRMIDMG--FED---DIRTIFSFFKGQRQTLLFSATMPKKIQN--FAKSALVKPVTVN 386 (610)
T ss_pred HHHHHHhhccHHHHHHhhhhhHHHHhhcc--chh---hHHHHHHHHhhhhheeeeeccccHHHHH--HHHhhcccceEEe
Confidence 88843 3444556799999999999999 554 4455555544 78999999999999766 4444566777665
Q ss_pred cCC---CCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHH
Q 012728 225 SSF---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVL 301 (457)
Q Consensus 225 ~~~---~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~ 301 (457)
... ..-++...+.+.. .+.|+-.|++.|.... .+++|||..+.++..+.++|--.|..++.+||+-++++|...+
T Consensus 387 VGRAGAAsldViQevEyVk-qEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 387 VGRAGAASLDVIQEVEYVK-QEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred cccccccchhHHHHHHHHH-hhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHH
Confidence 432 1222222222222 2467777888877654 5699999999999999999999999999999999999999999
Q ss_pred HHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 012728 302 DDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (457)
Q Consensus 302 ~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~ 368 (457)
+.|+.|+.+||||||+++.|+|+|++.+|||||+|..++.|+||+||+||.|+.|.+.+|+++...+
T Consensus 465 ~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 465 EAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEE 531 (610)
T ss_pred HHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchH
Confidence 9999999999999999999999999999999999999999999999999999999999999876543
No 38
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-46 Score=342.58 Aligned_cols=353 Identities=19% Similarity=0.269 Sum_probs=291.1
Q ss_pred ccccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------
Q 012728 9 QSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------- 77 (457)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----------- 77 (457)
+-......|+.++.++.+..++.+ -.|.+|+|+|.+++|..+.|++++-+|.||||||.+|++|++.+
T Consensus 217 s~~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~ 295 (731)
T KOG0339|consen 217 SPPRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGE 295 (731)
T ss_pred CCCCCcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCC
Confidence 334566788999999999999998 59999999999999999999999999999999999999998743
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH--
Q 012728 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-- 151 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~-- 151 (457)
++..+|++||++|+.|+..+++++ |++...+.++....+.... +.. ...+ +++||+++.++.
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---Lk~---g~Ei------vVaTPgRlid~Vkm 363 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---LKE---GAEI------VVATPGRLIDMVKM 363 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---hhc---CCeE------EEechHHHHHHHHh
Confidence 788999999999999999988875 6666666666554433222 211 1233 677888887774
Q ss_pred hhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE-ecC--CC
Q 012728 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSS--FN 228 (457)
Q Consensus 152 ~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~-~~~--~~ 228 (457)
+..++.++.+||+||+++|.++| |++....|..- ..|+.|.++||||+...+.......+. +|+.+ ..+ ..
T Consensus 364 Katn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~h--irpdrQtllFsaTf~~kIe~lard~L~--dpVrvVqg~vgea 437 (731)
T KOG0339|consen 364 KATNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQH--IRPDRQTLLFSATFKKKIEKLARDILS--DPVRVVQGEVGEA 437 (731)
T ss_pred hcccceeeeEEEEechhhhhccc--cHHHHHHHHhh--cCCcceEEEeeccchHHHHHHHHHHhc--CCeeEEEeehhcc
Confidence 44567779999999999999999 66555544332 236999999999999998886666654 44432 222 33
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC
Q 012728 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g 307 (457)
-..|...+......+.|+..|.+.|... ..+++|||+.-+..++.++..|+..|++|..+||++.+.+|.+++.+|+.+
T Consensus 438 n~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk 517 (731)
T KOG0339|consen 438 NEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK 517 (731)
T ss_pred ccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc
Confidence 4456666777777788888887776654 557899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012728 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 308 ~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
...|||+||+.++|+|||.++.||+||+-.+++.|.||+||+||.|..|.++++++..|.+..-.+++.....
T Consensus 518 ~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~a 590 (731)
T KOG0339|consen 518 RKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGA 590 (731)
T ss_pred CCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999998877777765443
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-44 Score=375.96 Aligned_cols=328 Identities=21% Similarity=0.292 Sum_probs=240.2
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHH
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~ 91 (457)
.|+++++++.+.+.+++ .|+.+|+|+|.++++. +.+|+|++++||||+|||++|.++++. .+++++|++|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 47889999999999998 6999999999999998 678999999999999999999998775 478999999999999
Q ss_pred HHHHHHHHHc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEEec
Q 012728 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDE 166 (457)
Q Consensus 92 ~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lViDE 166 (457)
.|+++.++.+ |..+....+....... .+ ...++++ +||+++..+.+. ..+..++++|+||
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV------~Tpek~~~llr~~~~~l~~v~lvViDE 145 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIV------ATSEKVDSLLRNGAPWLDDITCVVVDE 145 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEE------ECHHHHHHHHhcChhhhhhcCEEEEEC
Confidence 9999999886 5555555544321110 00 1244554 455555555332 2345689999999
Q ss_pred cccccccCCCCHHHHHH-HHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCC------CeEEecCC-CCCceEEEE--
Q 012728 167 AHCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSSF-NRPNLFYEV-- 236 (457)
Q Consensus 167 ah~~~~~~~~~~~~~~~-l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~i~~~~-- 236 (457)
+|.+.+.+ +.+.+.. +.+++...++.|++++|||+++. .++..|++... |..+.... ....+.+..
T Consensus 146 ~H~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~ 221 (737)
T PRK02362 146 VHLIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQ 221 (737)
T ss_pred ccccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccccc
Confidence 99997644 4444544 34445555689999999999874 45677775421 11100000 000000000
Q ss_pred --EEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC--------------------------------
Q 012728 237 --RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-------------------------------- 282 (457)
Q Consensus 237 --~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g-------------------------------- 282 (457)
.........+..+.+.++ .++++||||+|+..++.++..|....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~ 299 (737)
T PRK02362 222 REVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLA 299 (737)
T ss_pred ccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHH
Confidence 000011223334444443 46789999999999999888876431
Q ss_pred ----CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE----ec-----CCCCHHHHHHHhccc
Q 012728 283 ----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRA 349 (457)
Q Consensus 283 ----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~----~~-----~p~s~~~~~Qr~GRa 349 (457)
.++.++|++|++.+|..+++.|++|.++|||||+++++|+|+|.+++||+ || .|.+..+|+||+|||
T Consensus 300 ~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRA 379 (737)
T PRK02362 300 DCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRA 379 (737)
T ss_pred HHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcC
Confidence 36889999999999999999999999999999999999999999999997 66 588999999999999
Q ss_pred CCCCCC--ceEEEEeccc
Q 012728 350 GRDQLP--SKSLLYYGMD 365 (457)
Q Consensus 350 gR~g~~--g~~~~~~~~~ 365 (457)
||.|.. |.++++....
T Consensus 380 GR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 380 GRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCCCCceEEEEecCc
Confidence 999865 8888888765
No 40
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-45 Score=330.59 Aligned_cols=346 Identities=21% Similarity=0.316 Sum_probs=279.0
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEc
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~ 85 (457)
+..++|++++|.+++++.+.. |||+.|+.+|+.|+..+.+|.|+..++++|+|||.+|.+++++. ...+++++
T Consensus 23 evvdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalila 101 (397)
T KOG0327|consen 23 EVVDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILA 101 (397)
T ss_pred HHhhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhc
Confidence 455789999999999999997 79999999999999999999999999999999999999999876 55799999
Q ss_pred chHHHHHHHHHHHHHcCCce----eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhh--hcCCc
Q 012728 86 PLIALMENQVIGLKEKGIAG----EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLL 159 (457)
Q Consensus 86 P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~--~~~~l 159 (457)
|+++|+.|..+....+|... ....++........ .+.. .+.+.++.||++...+.+.. ..+.+
T Consensus 102 PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~---~i~~--------~~~hivvGTpgrV~dml~~~~l~~~~i 170 (397)
T KOG0327|consen 102 PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQ---ALLK--------DKPHIVVGTPGRVFDMLNRGSLSTDGI 170 (397)
T ss_pred chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhh---hhhc--------cCceeecCCchhHHHhhccccccccce
Confidence 99999999998888765432 22222221111111 0111 11233788898888775443 34558
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---CCceEEE
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYE 235 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~ 235 (457)
+++|+||++.+++.| |+ .++..+.+..| +.|++++|||.++++...-.+ .+.+|+.+....+ ...+...
T Consensus 171 KmfvlDEaDEmLs~g--fk---dqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~--f~~~pv~i~vkk~~ltl~gikq~ 243 (397)
T KOG0327|consen 171 KMFVLDEADEMLSRG--FK---DQIYDIFQELPSDVQVVLLSATMPSDVLEVTKK--FMREPVRILVKKDELTLEGIKQF 243 (397)
T ss_pred eEEeecchHhhhccc--hH---HHHHHHHHHcCcchhheeecccCcHHHHHHHHH--hccCceEEEecchhhhhhheeee
Confidence 999999999999988 44 56666677776 799999999999998774444 3456665544322 2223333
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012728 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+..... ++|+..|+++.+ .-...+||||++..+..+...|...++.+..+|+++.+.+|..++..|++|+.+|||+|
T Consensus 244 ~i~v~k-~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlItt 320 (397)
T KOG0327|consen 244 YINVEK-EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITT 320 (397)
T ss_pred eeeccc-cccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeec
Confidence 332222 348888888888 45568999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
+.+++|+|+..++.||+|++|...++|+||+||+||.|.+|.++.+++..+...++.+.+....
T Consensus 321 dl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~ 384 (397)
T KOG0327|consen 321 DLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNT 384 (397)
T ss_pred cccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999999888866543
No 41
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=334.03 Aligned_cols=354 Identities=21% Similarity=0.263 Sum_probs=256.0
Q ss_pred ccccCCCCChHHHHHH----------HHHHhcCCCCCCHHHHHHHHHHHc---------CCCEEEEcCCCchhhHHHHHh
Q 012728 13 QTQKNKPLHEKEALVK----------LLRWHFGHAQFRDKQLDAIQAVLS---------GRDCFCLMPTGGGKSMCYQIP 73 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~----------~l~~~~g~~~~~~~Q~~~i~~~~~---------~~~~lv~a~TGsGKT~~~~l~ 73 (457)
+...|+.++.+..... .+.+ ++++...|+|..++|+++. ++|+.|.||||||||++|.+|
T Consensus 125 slq~~s~l~~se~k~~~d~lea~~~q~l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iP 203 (620)
T KOG0350|consen 125 SLQIFSVLGKSEMKNLEDTLEATIDQLLVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIP 203 (620)
T ss_pred ceeeeeccchhHHHHHHHHHHHHHHHHHHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhH
Confidence 3445666666655443 4777 6999999999999999962 579999999999999999999
Q ss_pred hhcC-------CCeEEEEcchHHHHHHHHHHHHHcCC----ceeEecCCCcHHHHHHHHHHhhcCCC--cccEEEECCCc
Q 012728 74 ALAK-------PGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKP--SLRLLYVTPEL 140 (457)
Q Consensus 74 ~l~~-------~~~~lvl~P~~~L~~q~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~t~~~ 140 (457)
+++. .-+++||+|+++|+.|.++.|..+.. .+..+.+...... ....+....+ .++| +
T Consensus 204 IVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~---E~~qL~~~~~~~~~DI------l 274 (620)
T KOG0350|consen 204 IVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLED---EARQLASDPPECRIDI------L 274 (620)
T ss_pred HHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHH---HHHHHhcCCCccccce------E
Confidence 9763 35799999999999999999998633 3222332222222 2223333332 1233 6
Q ss_pred ccCchhHHHHHh---hhhcCCccEEEEeccccccccCCCCHHHHHHH----------------------------HHHHH
Q 012728 141 TATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL----------------------------SSLRN 189 (457)
Q Consensus 141 i~t~~~~~~l~~---~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l----------------------------~~~~~ 189 (457)
++|||++-+..+ .+.+.+++++||||||++++.. |..-...+ ..+..
T Consensus 275 VaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qs--fQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t 352 (620)
T KOG0350|consen 275 VATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQS--FQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLT 352 (620)
T ss_pred EcCchHHHHhccCCCCcchhhceEEEechHHHHHHHH--HHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHh
Confidence 778888766643 4567779999999999997622 11111111 11111
Q ss_pred h----CCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC------CCCCceEEEEEEeCchhhHHHHHHHHHHhcCCc
Q 012728 190 Y----LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259 (457)
Q Consensus 190 ~----~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ 259 (457)
. .+....+.+|||++....+ ...+.+..|...... +..|..............+-..+..+++..+..
T Consensus 353 ~~~~~~~~l~kL~~satLsqdP~K--l~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~ 430 (620)
T KOG0350|consen 353 KLGKLYPPLWKLVFSATLSQDPSK--LKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLN 430 (620)
T ss_pred hcCCcCchhHhhhcchhhhcChHH--HhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcc
Confidence 1 1122367788888776655 444555555332211 111111111111111123445677788888889
Q ss_pred cEEEEeCCcccHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC
Q 012728 260 CAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (457)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~----~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~ 335 (457)
++|+|+++.+.+.+++..|+ .-..++..+.|+++.+.|...++.|+.|++++|||+|+++||+|+.+++.||+||+
T Consensus 431 r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~ 510 (620)
T KOG0350|consen 431 RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDP 510 (620)
T ss_pred eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCC
Confidence 99999999999999999987 23566778999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012728 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 336 p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
|.+..+|+||+||++|+|+.|.|+++....+...+..+++....-
T Consensus 511 P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~ 555 (620)
T KOG0350|consen 511 PASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLW 555 (620)
T ss_pred CchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999887653
No 42
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-44 Score=361.92 Aligned_cols=350 Identities=21% Similarity=0.340 Sum_probs=279.2
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------CCe
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGI 80 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----------~~~ 80 (457)
.....|...+++..+...+++ +||..++|+|.+|||+++.|+|+|.+|.||||||++|++|++.+ ++.
T Consensus 362 kpv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi 440 (997)
T KOG0334|consen 362 KPVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPI 440 (997)
T ss_pred cccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCce
Confidence 345678888999999999976 89999999999999999999999999999999999999998843 789
Q ss_pred EEEEcchHHHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH--Hhhh
Q 012728 81 VLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIH 154 (457)
Q Consensus 81 ~lvl~P~~~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l--~~~~ 154 (457)
++|++||++|+.|+.+.++.+ ++......++..... ....+..+ ..| +|+|||+..++ .+..
T Consensus 441 ~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~---qiaelkRg---~eI------vV~tpGRmiD~l~~n~g 508 (997)
T KOG0334|consen 441 ALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQ---QIAELKRG---AEI------VVCTPGRMIDILCANSG 508 (997)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHH---HHHHHhcC---Cce------EEeccchhhhhHhhcCC
Confidence 999999999999999988774 444444444443332 22333332 344 55566655444 2223
Q ss_pred h---cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE-ec--CCC
Q 012728 155 S---RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KS--SFN 228 (457)
Q Consensus 155 ~---~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~-~~--~~~ 228 (457)
. +..+.++|+||||++.++| |.|....| +.+..|..|++++|||.+..+.......+. .|+.+ .. +.-
T Consensus 509 rvtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~svV 582 (997)
T KOG0334|consen 509 RVTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSVV 582 (997)
T ss_pred ccccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccceeE
Confidence 3 3335599999999999888 66666553 333356899999999999986554444444 44432 22 122
Q ss_pred CCceEEEEEEeCchhhHHHHHHHHHHh-cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC
Q 012728 229 RPNLFYEVRYKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (457)
Q Consensus 229 ~~~i~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g 307 (457)
-..+...+.......+|+..|.++|.. ....++||||.+...|..+.+.|.+.|+.|..+||+.++.+|..+++.|++|
T Consensus 583 ~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~ 662 (997)
T KOG0334|consen 583 CKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG 662 (997)
T ss_pred eccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc
Confidence 345556666666567899999999876 3577899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccC
Q 012728 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 308 ~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
.+.+||||+++++|+|++++.+|||||+|...+.|+||+||+||.|+.|.|++|+++.+.+..-.|.+.....
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~ 735 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELS 735 (997)
T ss_pred CceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999997777776666666333
No 43
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.6e-45 Score=347.14 Aligned_cols=343 Identities=19% Similarity=0.256 Sum_probs=281.4
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEE
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl 84 (457)
......|+.+-|..+++..|+.+ ||..|+++|..|||.++.+-|+||++..|+|||++|.+.++.. ....+|+
T Consensus 21 ~~~~~~fe~l~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv 99 (980)
T KOG4284|consen 21 SNCTPGFEQLALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIV 99 (980)
T ss_pred cCCCCCHHHHHHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEE
Confidence 34567889999999999999984 9999999999999999999999999999999999998777653 6789999
Q ss_pred cchHHHHHHHHHHHHHcCC-----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH--HhhhhcC
Q 012728 85 SPLIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRG 157 (457)
Q Consensus 85 ~P~~~L~~q~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l--~~~~~~~ 157 (457)
+|||+++.|+.+.+..++. .+..+.++........... . .+| +++|||++..+ ....+.+
T Consensus 100 ~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk-----~--~rI------vIGtPGRi~qL~el~~~n~s 166 (980)
T KOG4284|consen 100 TPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLK-----Q--TRI------VIGTPGRIAQLVELGAMNMS 166 (980)
T ss_pred ecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhh-----h--ceE------EecCchHHHHHHHhcCCCcc
Confidence 9999999999999888654 4555555543332211111 1 333 67778888777 4566778
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceE---
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--- 233 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--- 233 (457)
+++++|+||||.+.+.+. |+ ..+..+...+| ..|++++|||.+......+.+. +++|..++.+.+.+.+.
T Consensus 167 ~vrlfVLDEADkL~~t~s-fq---~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~Gik 240 (980)
T KOG4284|consen 167 HVRLFVLDEADKLMDTES-FQ---DDINIIINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIK 240 (980)
T ss_pred ceeEEEeccHHhhhchhh-HH---HHHHHHHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechh
Confidence 899999999999988553 44 56677788888 6899999999999988866664 47888887765554431
Q ss_pred EEEEEeCc-------hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc
Q 012728 234 YEVRYKDL-------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (457)
Q Consensus 234 ~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~ 306 (457)
..+..... ...+++.|.++++.-+-.++||||+....|+.++..|+..|++|.++.|.|++++|..+++.++.
T Consensus 241 Qyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 241 QYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred heeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 11111111 13477888888888888899999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchH-HHHHHH
Q 012728 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFI 373 (457)
Q Consensus 307 g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~-~~~~~i 373 (457)
-.++|||+||..+||||-+++++||+.|+|.+.++|.||+|||||.|..|.+++|+..... +.++.+
T Consensus 321 f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 321 FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999887644 555544
No 44
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.2e-42 Score=362.98 Aligned_cols=332 Identities=21% Similarity=0.233 Sum_probs=252.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHH
Q 012728 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIA 89 (457)
Q Consensus 19 ~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~ 89 (457)
.++.+..+...+.+.|||+ |||.|.++++.+.++ .|.+++||||+|||.+|+++++. .+.+++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3455667778888889996 999999999999874 68999999999999999887764 4889999999999
Q ss_pred HHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEe
Q 012728 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (457)
Q Consensus 90 L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViD 165 (457)
||.|+++.++.+ ++....+++.............+..+. ++++++||.++ .+...+++++++|||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll---------~~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLL---------QKDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHh---------hCCCCcccCCEEEee
Confidence 999999988873 455666666666666666666666554 66777776432 233456679999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-CCCCceEEEEEEeCchhh
Q 012728 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDD 244 (457)
Q Consensus 166 Eah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 244 (457)
|+|++ |. .....+....++.++++||||+.+.... ....+..++.++... ..+..+...+..... ..
T Consensus 581 Eahrf---gv------~~~~~L~~~~~~~~vL~~SATpiprtl~--~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~ 648 (926)
T TIGR00580 581 EEQRF---GV------KQKEKLKELRTSVDVLTLSATPIPRTLH--MSMSGIRDLSIIATPPEDRLPVRTFVMEYDP-EL 648 (926)
T ss_pred ccccc---ch------hHHHHHHhcCCCCCEEEEecCCCHHHHH--HHHhcCCCcEEEecCCCCccceEEEEEecCH-HH
Confidence 99995 32 2223333444578999999999887765 344556666665543 334444433332221 11
Q ss_pred HHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 012728 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (457)
Q Consensus 245 ~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 322 (457)
....+...+. .+++++||||++++++.+++.|++. ++++..+||+|++++|..++++|++|+.+|||||+++++|+
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 1223333333 4578999999999999999999985 78899999999999999999999999999999999999999
Q ss_pred CCCCccEEEEecCCC-CHHHHHHHhcccCCCCCCceEEEEecc------chHHHHHHHHHh
Q 012728 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGM------DDRRRMEFILSK 376 (457)
Q Consensus 323 dip~v~~Vi~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~~~~~------~~~~~~~~i~~~ 376 (457)
|+|++++||+++.|. +..+|+||+||+||.|+.|.|++++.. ...+.++.+.+.
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~~~~~~RL~~~~~~ 787 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALTEDAQKRLEAIQEF 787 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCCHHHHHHHHHHHHh
Confidence 999999999999875 688999999999999999999999854 334555544443
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-42 Score=366.99 Aligned_cols=320 Identities=22% Similarity=0.290 Sum_probs=226.6
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------------CCeEEEEcchHH
Q 012728 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPLIA 89 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------------~~~~lvl~P~~~ 89 (457)
+++.+.+.+++ +|..|+|+|.++++.+++|+|++++||||||||++|++|++.. +..+||++|+++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 55667777765 7889999999999999999999999999999999999998732 346999999999
Q ss_pred HHHHHHHHHHH-----------c-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh-
Q 012728 90 LMENQVIGLKE-----------K-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK- 152 (457)
Q Consensus 90 L~~q~~~~~~~-----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~- 152 (457)
|++|+.+.+.. . ++.....++............ . ..+|+++||+.+ ..+..
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~----~--~p~IlVtTPE~L------~~ll~~ 163 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK----K--PPHILITTPESL------AILLNS 163 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh----C--CCCEEEecHHHH------HHHhcC
Confidence 99999876542 1 334455555555444332221 1 256777777643 22211
Q ss_pred ---hhhcCCccEEEEecccccccc--CCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCC------CCC
Q 012728 153 ---IHSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNP 220 (457)
Q Consensus 153 ---~~~~~~l~~lViDEah~~~~~--~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~------~~~ 220 (457)
...+.++++||+||+|.+.+. |..+... +.++.... ++.+++++|||+++. ..+..++.. ..+
T Consensus 164 ~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~---L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~ 238 (876)
T PRK13767 164 PKFREKLRTVKWVIVDEIHSLAENKRGVHLSLS---LERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRD 238 (876)
T ss_pred hhHHHHHhcCCEEEEechhhhccCccHHHHHHH---HHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCc
Confidence 113456899999999999753 2222222 33444444 478899999999874 344555543 222
Q ss_pred e-EEecCCCCCceEEEEEE----------eCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC------CC
Q 012728 221 L-VLKSSFNRPNLFYEVRY----------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GI 283 (457)
Q Consensus 221 ~-~~~~~~~~~~i~~~~~~----------~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------g~ 283 (457)
. ++.....+ .....+.. ..........+.+.++. ++++||||||+..|+.++..|++. +.
T Consensus 239 ~~iv~~~~~k-~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~ 315 (876)
T PRK13767 239 CEIVDARFVK-PFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDED 315 (876)
T ss_pred eEEEccCCCc-cceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhcccc
Confidence 2 22222211 11111110 00111233344444443 567999999999999999999873 46
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC-CCCceEEEEe
Q 012728 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYY 362 (457)
Q Consensus 284 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~-g~~g~~~~~~ 362 (457)
.+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+++.|.++.+|+||+||+||. |..+.+.++.
T Consensus 316 ~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 316 NIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred ceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 799999999999999999999999999999999999999999999999999999999999999999987 4445555554
Q ss_pred c
Q 012728 363 G 363 (457)
Q Consensus 363 ~ 363 (457)
.
T Consensus 396 ~ 396 (876)
T PRK13767 396 V 396 (876)
T ss_pred c
Confidence 3
No 46
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-43 Score=335.44 Aligned_cols=344 Identities=20% Similarity=0.256 Sum_probs=266.5
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------CCeEEEEcchH
Q 012728 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLI 88 (457)
Q Consensus 20 ~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----------~~~~lvl~P~~ 88 (457)
+...+.+...+.. .||..|+|.|.+++|.++.+++++.+||||+|||++|.+|++.+ +-+++|+.|++
T Consensus 141 ~~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptr 219 (593)
T KOG0344|consen 141 YSMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTR 219 (593)
T ss_pred hhhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchH
Confidence 4556778888887 59999999999999999999999999999999999999998754 46899999999
Q ss_pred HHHHHHHHHHHHcCCcee------EecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh----hhcCC
Q 012728 89 ALMENQVIGLKEKGIAGE------FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGL 158 (457)
Q Consensus 89 ~L~~q~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~----~~~~~ 158 (457)
+|+.|.+.++..+..+.. ..........+.. ...... .++ ++.||.++..+... ..+..
T Consensus 220 eLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a---~~~~~k--~di------li~TP~ri~~~~~~~~~~idl~~ 288 (593)
T KOG0344|consen 220 ELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPA---FLSDEK--YDI------LISTPMRIVGLLGLGKLNIDLSK 288 (593)
T ss_pred HHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccc---hhHHHH--HHH------HhcCHHHHHHHhcCCCccchhhe
Confidence 999999999998763311 0111100000000 000001 222 66777776666544 35667
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---CCceEEE
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYE 235 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~ 235 (457)
+..+|+||+|++.+. ..|......+-..+.. |+..+-+||||.+..+.+ +..+...++..+..+.. ...+...
T Consensus 289 V~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~Qe 364 (593)
T KOG0344|consen 289 VEWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQE 364 (593)
T ss_pred eeeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhh
Confidence 899999999999875 1144333333333332 678888999999998866 33334444443332221 2234444
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHH-HhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEE
Q 012728 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L-~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 314 (457)
.........|+..+.+++...-..+++||+.+.+.|.+|...| .-.++++.++||+.++.+|..++++|+.|++.||||
T Consensus 365 lvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLic 444 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLIC 444 (593)
T ss_pred heeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEe
Confidence 4455555678889999999988889999999999999999999 566899999999999999999999999999999999
Q ss_pred eccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 315 T~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
|+++++|+|+.+++.||+||+|.+..+|+||+||+||+|+.|.+++||+..+...++.+.+-...
T Consensus 445 Tdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 445 TDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred hhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998887765544
No 47
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.9e-44 Score=325.03 Aligned_cols=347 Identities=19% Similarity=0.214 Sum_probs=279.6
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-------CCeEEEEcc
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-------~~~~lvl~P 86 (457)
.-.|+.++|+..+.+++.+. ||..|+|+|++.+|.+++++++...+-||+|||.+|++|++++ +.++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 46799999999999999986 9999999999999999999999999999999999999999865 468999999
Q ss_pred hHHHHHHHHHHHHHcCCceeEecCCC-cHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH--HhhhhcCCccEEE
Q 012728 87 LIALMENQVIGLKEKGIAGEFLSSTQ-TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLVA 163 (457)
Q Consensus 87 ~~~L~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l--~~~~~~~~l~~lV 163 (457)
|++|+.|..+..+.+|-....-.+.. ..+.....+..+. .. .++++ +||+++..+ .-...+..+.+||
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~-~n--pDii~------ATpgr~~h~~vem~l~l~sveyVV 169 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN-EN--PDIII------ATPGRLLHLGVEMTLTLSSVEYVV 169 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc-cC--CCEEE------ecCceeeeeehheeccccceeeee
Confidence 99999999999998765433322211 1111222232222 12 34444 455554433 1224456689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCC---CceEEEEEEe
Q 012728 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNLFYEVRYK 239 (457)
Q Consensus 164 iDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~ 239 (457)
+||++.+.++|+. .++..+....| +.|.++||||+|..... ....++.+|..+....+. +.....+...
T Consensus 170 fdEadrlfemgfq-----eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~~~ 242 (529)
T KOG0337|consen 170 FDEADRLFEMGFQ-----EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFFRV 242 (529)
T ss_pred ehhhhHHHhhhhH-----HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhheeee
Confidence 9999999999854 67777888887 68999999999999777 666788888887743221 2222222222
Q ss_pred CchhhHHHHHHHHHHhcC-CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 012728 240 DLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (457)
Q Consensus 240 ~~~~~~~~~l~~~l~~~~-~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 318 (457)
..+++...|+.++.... .++++||+.|..+++.+...|+..|+.+..++|.+++..|..-..+|..++..+||.||++
T Consensus 243 -~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdva 321 (529)
T KOG0337|consen 243 -RKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVA 321 (529)
T ss_pred -ccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhh
Confidence 23578888888887653 4579999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcc
Q 012728 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 378 (457)
++|+|+|-.+.||+||.|.+...|+||+||+.|+|+.|.++.++.+.+..++-.+.....
T Consensus 322 aRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflg 381 (529)
T KOG0337|consen 322 ARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLG 381 (529)
T ss_pred hccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcC
Confidence 999999999999999999999999999999999999999999999988877776665544
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.7e-41 Score=350.09 Aligned_cols=316 Identities=21% Similarity=0.253 Sum_probs=241.1
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHH
Q 012728 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (457)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q 93 (457)
...+.+.+.+.++|. ||++|.++++.+.++ .+++++||||||||++|+++++. .+.+++|++||++|+.|
T Consensus 247 ~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q 325 (681)
T PRK10917 247 DGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQ 325 (681)
T ss_pred ChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHH
Confidence 356667777778996 999999999999876 37999999999999999988764 47799999999999999
Q ss_pred HHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccc
Q 012728 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (457)
Q Consensus 94 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~ 169 (457)
+++.++++ ++....+.++.....+......+..+. .+++++||..+. ....+.+++++|+||+|+
T Consensus 326 ~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~---------~~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 326 HYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQ---------DDVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhc---------ccchhcccceEEEechhh
Confidence 99998874 577888888888777777777776665 667666665432 122355689999999999
Q ss_pred ccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEec-CCCCCceEEEEEEeCchhhHHHH
Q 012728 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYAD 248 (457)
Q Consensus 170 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~ 248 (457)
+.. .....+.....+.++++||||+.+.... ....+..+...+.. +..+..+...+.........+..
T Consensus 395 fg~---------~qr~~l~~~~~~~~iL~~SATp~prtl~--~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~ 463 (681)
T PRK10917 395 FGV---------EQRLALREKGENPHVLVMTATPIPRTLA--MTAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYER 463 (681)
T ss_pred hhH---------HHHHHHHhcCCCCCEEEEeCCCCHHHHH--HHHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHHH
Confidence 632 2222333434468899999999887654 33334334434332 23344454444433322333344
Q ss_pred HHHHHHhcCCccEEEEeCCcc--------cHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 012728 249 LCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (457)
Q Consensus 249 l~~~l~~~~~~~~iIf~~s~~--------~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 318 (457)
+.+.+ ..+.+++|||+..+ .++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||||+++
T Consensus 464 i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 464 IREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 44444 34678999999654 356677888765 5789999999999999999999999999999999999
Q ss_pred cccCCCCCccEEEEecCCC-CHHHHHHHhcccCCCCCCceEEEEec
Q 012728 319 GMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
++|+|+|++++||+++.|. +..++.||+||+||.|..|.|++++.
T Consensus 542 e~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 542 EVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 9999999999999999987 58899999999999999999999995
No 49
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.9e-41 Score=342.38 Aligned_cols=324 Identities=24% Similarity=0.297 Sum_probs=255.9
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----------CCeEEEEcchHH
Q 012728 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIA 89 (457)
Q Consensus 21 ~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----------~~~~lvl~P~~~ 89 (457)
-+++.+.+.++.. |.+|||.|.++++.+.+|+|+++.||||||||+++.+|++.. +-.+|+|+|.+|
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4678888999884 899999999999999999999999999999999999998743 236999999999
Q ss_pred HHHHHHHHHHH----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcc---cCchhHHHHHhhhhcCCccEE
Q 012728 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT---ATPGFMSKLKKIHSRGLLNLV 162 (457)
Q Consensus 90 L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i---~t~~~~~~l~~~~~~~~l~~l 162 (457)
|.+++.+++.. +|+.....++.+....+..... ..++|+++|||.+ .+..... ..+.+++++
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~------~PPdILiTTPEsL~lll~~~~~r-----~~l~~vr~V 153 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK------NPPHILITTPESLAILLNSPKFR-----ELLRDVRYV 153 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC------CCCcEEEeChhHHHHHhcCHHHH-----HHhcCCcEE
Confidence 99999988765 7888888888877766554322 2378999999832 2322211 124458999
Q ss_pred EEeccccccc--cCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCC-CeEEecCCCCCceEEEEEEe
Q 012728 163 AIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRYK 239 (457)
Q Consensus 163 ViDEah~~~~--~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 239 (457)
||||+|.+.+ .|... .-.+.++....++.|.+++|||..+. .++.+++.... +..+.......+..+.+...
T Consensus 154 IVDEiHel~~sKRG~~L---sl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p 228 (814)
T COG1201 154 IVDEIHALAESKRGVQL---ALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVISP 228 (814)
T ss_pred Eeehhhhhhccccchhh---hhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEec
Confidence 9999999954 55432 24566666666689999999999976 45688887665 44333332222333322221
Q ss_pred --C------chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC-CceEeecCCCCHHHHHHHHHHHhcCCce
Q 012728 240 --D------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (457)
Q Consensus 240 --~------~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g-~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (457)
. .....+..+.++++++. .+|||+||+..++.++..|++.+ ..+..+||.++.+.|..+.++|++|+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lr 306 (814)
T COG1201 229 VEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELK 306 (814)
T ss_pred CCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCce
Confidence 1 12345667777777755 79999999999999999999986 8899999999999999999999999999
Q ss_pred EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCC-CCCCceEEEEecc
Q 012728 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSKSLLYYGM 364 (457)
Q Consensus 311 vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR-~g~~g~~~~~~~~ 364 (457)
++|||+.++-|||+.+++.||+++.|.++..++||+||+|+ -|..++++++...
T Consensus 307 avV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 307 AVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 99999999999999999999999999999999999999995 4666888887766
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-41 Score=354.80 Aligned_cols=330 Identities=23% Similarity=0.301 Sum_probs=235.8
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHH
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L 90 (457)
.|+++++++.+.+.+++ .|+.+|+|+|.++++. +.+|+|+++++|||+|||++|.+|++. .++++|+++|+++|
T Consensus 2 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aL 80 (720)
T PRK00254 2 KVDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKAL 80 (720)
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 46788999999999998 6999999999999986 788999999999999999999988764 37899999999999
Q ss_pred HHHHHHHHHH---cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEEe
Q 012728 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAID 165 (457)
Q Consensus 91 ~~q~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lViD 165 (457)
+.|+++.++. +|..+..+.+....... . . ...+++++||+ .+..+.+. ....++++||+|
T Consensus 81 a~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe------~~~~ll~~~~~~l~~l~lvViD 145 (720)
T PRK00254 81 AEEKYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAE------KFDSLLRHGSSWIKDVKLVVAD 145 (720)
T ss_pred HHHHHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHH------HHHHHHhCCchhhhcCCEEEEc
Confidence 9999988875 45666555554432211 0 0 12456555554 44444321 234568999999
Q ss_pred ccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCC-----ceEEE-EE-
Q 012728 166 EAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-----NLFYE-VR- 237 (457)
Q Consensus 166 Eah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~-~~- 237 (457)
|+|.+.+++. .+ .+..+.... .+.|++++|||+++. .++..|++... +. ...++ .+... ..
T Consensus 146 E~H~l~~~~r--g~---~le~il~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~-~~~rpv~l~~~~~~~~~~~ 214 (720)
T PRK00254 146 EIHLIGSYDR--GA---TLEMILTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VV-SDWRPVKLRKGVFYQGFLF 214 (720)
T ss_pred CcCccCCccc--hH---HHHHHHHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---cc-CCCCCCcceeeEecCCeee
Confidence 9999987553 33 333344433 378999999999864 56677776431 11 11111 11110 00
Q ss_pred EeCc-----hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC-------------------------------
Q 012728 238 YKDL-----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------- 281 (457)
Q Consensus 238 ~~~~-----~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------------------------------- 281 (457)
.... .......+.+.++ .++++||||+|+..++.++..|...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 292 (720)
T PRK00254 215 WEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKK 292 (720)
T ss_pred ccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHH
Confidence 0000 1112233444444 3568999999999998877666321
Q ss_pred --CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEE-------ecCCC-CHHHHHHHhcccCC
Q 012728 282 --GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGR 351 (457)
Q Consensus 282 --g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~-------~~~p~-s~~~~~Qr~GRagR 351 (457)
..++.++|++|++++|..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +..+|.||+|||||
T Consensus 293 ~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR 372 (720)
T PRK00254 293 ALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGR 372 (720)
T ss_pred HHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCC
Confidence 235899999999999999999999999999999999999999999999994 44433 57899999999999
Q ss_pred CC--CCceEEEEeccch-HHHHHHHH
Q 012728 352 DQ--LPSKSLLYYGMDD-RRRMEFIL 374 (457)
Q Consensus 352 ~g--~~g~~~~~~~~~~-~~~~~~i~ 374 (457)
.| ..|.++++....+ .+.++..+
T Consensus 373 ~~~d~~G~~ii~~~~~~~~~~~~~~~ 398 (720)
T PRK00254 373 PKYDEVGEAIIVATTEEPSKLMERYI 398 (720)
T ss_pred CCcCCCceEEEEecCcchHHHHHHHH
Confidence 75 5689998887655 33344443
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.1e-40 Score=341.92 Aligned_cols=314 Identities=19% Similarity=0.246 Sum_probs=231.6
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHH
Q 012728 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~ 94 (457)
..+...+.+.++| +||+.|.++++.++++ .+.+++||||||||++|+++++. .+.+++|++||++|+.|+
T Consensus 222 ~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~ 300 (630)
T TIGR00643 222 EELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQH 300 (630)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHH
Confidence 3444444445899 5999999999999865 26899999999999999888754 478999999999999999
Q ss_pred HHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccc
Q 012728 95 VIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (457)
Q Consensus 95 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (457)
++.++++ ++....+.++.....+......+..+. .+++++||..+. +...+.+++++||||+|++
T Consensus 301 ~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~---------~~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQ---------EKVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHh---------ccccccccceEEEechhhc
Confidence 9988873 577888888887777666666666655 667776665432 2334567999999999995
Q ss_pred cccCCCCHHHHHHHHHHHHhCC---CccEEEEeccCChhHHHHHHHHcCCCCCeEEe-cCCCCCceEEEEEEeCchhhHH
Q 012728 171 SSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPNLFYEVRYKDLLDDAY 246 (457)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~---~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~ 246 (457)
.. .+...+..... +.++++||||+.+.... ....+..+...+. .+..+..+...+.........+
T Consensus 370 g~---------~qr~~l~~~~~~~~~~~~l~~SATp~prtl~--l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~ 438 (630)
T TIGR00643 370 GV---------EQRKKLREKGQGGFTPHVLVMSATPIPRTLA--LTVYGDLDTSIIDELPPGRKPITTVLIKHDEKDIVY 438 (630)
T ss_pred cH---------HHHHHHHHhcccCCCCCEEEEeCCCCcHHHH--HHhcCCcceeeeccCCCCCCceEEEEeCcchHHHHH
Confidence 32 22223333333 67899999999876544 2222222222222 2222333443333322212222
Q ss_pred HHHHHHHHhcCCccEEEEeCCcc--------cHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec
Q 012728 247 ADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (457)
Q Consensus 247 ~~l~~~l~~~~~~~~iIf~~s~~--------~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~ 316 (457)
..+.+.+ ..+.+++|||+..+ .++.+++.|.+. ++.+..+||+|++++|..+++.|++|+.+|||||+
T Consensus 439 ~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~ 516 (630)
T TIGR00643 439 EFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT 516 (630)
T ss_pred HHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc
Confidence 2222222 24567999998764 456777777764 77899999999999999999999999999999999
Q ss_pred cccccCCCCCccEEEEecCCC-CHHHHHHHhcccCCCCCCceEEEEe
Q 012728 317 AFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (457)
Q Consensus 317 ~~~~Gldip~v~~Vi~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~~~ 362 (457)
++++|+|+|++++||+++.|. +..+|.||+||+||.|+.|.|++++
T Consensus 517 vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 517 VIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999999986 6889999999999999999999998
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.4e-40 Score=354.77 Aligned_cols=319 Identities=21% Similarity=0.212 Sum_probs=239.6
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchHHH
Q 012728 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIAL 90 (457)
Q Consensus 20 ~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~~L 90 (457)
+..+..+.+.+.+.|+| ++|+.|.++++.++++ .|+++++|||+|||.+|+.+++ ..+.+++|++||++|
T Consensus 583 ~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eL 661 (1147)
T PRK10689 583 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661 (1147)
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 44456677777777999 4999999999999986 7999999999999998876653 458899999999999
Q ss_pred HHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEec
Q 012728 91 MENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (457)
Q Consensus 91 ~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDE 166 (457)
+.|+++.++.. ++....+.+.............+..+. ++++++||.++. ......+++++||||
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~---------~~v~~~~L~lLVIDE 730 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQ---------SDVKWKDLGLLIVDE 730 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHh---------CCCCHhhCCEEEEec
Confidence 99999988862 345556666666666655555555444 678888775331 223345689999999
Q ss_pred cccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC-CCceEEEEEEeCchhhH
Q 012728 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDDA 245 (457)
Q Consensus 167 ah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~ 245 (457)
+|++ |. .....+....++.+++++|||+.+..... ...++.++..+..... +..+...+...... ..
T Consensus 731 ahrf---G~------~~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~~I~~~p~~r~~v~~~~~~~~~~-~~ 798 (1147)
T PRK10689 731 EHRF---GV------RHKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLSIIATPPARRLAVKTFVREYDSL-VV 798 (1147)
T ss_pred hhhc---ch------hHHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcEEEecCCCCCCCceEEEEecCcH-HH
Confidence 9996 42 12233333445899999999999887653 3345567766654332 33333222222211 11
Q ss_pred HHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCC
Q 012728 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (457)
Q Consensus 246 ~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 323 (457)
...+...+. .+++++||||+++.++.+++.|++. +..+..+||+|++++|..++.+|++|+.+|||||+++++|+|
T Consensus 799 k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGID 876 (1147)
T PRK10689 799 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 (1147)
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccc
Confidence 222222222 3568999999999999999999987 788999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecCC-CCHHHHHHHhcccCCCCCCceEEEEecc
Q 012728 324 RKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 324 ip~v~~Vi~~~~p-~s~~~~~Qr~GRagR~g~~g~~~~~~~~ 364 (457)
+|++++||..+.. .+..+|+||+||+||.|+.|.|++++..
T Consensus 877 IP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred cccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 9999999965543 3577899999999999999999998754
No 53
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-41 Score=349.71 Aligned_cols=335 Identities=21% Similarity=0.221 Sum_probs=232.4
Q ss_pred cCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHH
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~ 92 (457)
.|+++++++.+.+.+.+ .||. ++|+|.++++.+.+|++++++||||+|||+++.++++. .++++++++|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 46788999999999987 5887 99999999999999999999999999999999888765 3788999999999999
Q ss_pred HHHHHHHHc---CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh--hhhcCCccEEEEecc
Q 012728 93 NQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNLVAIDEA 167 (457)
Q Consensus 93 q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~--~~~~~~l~~lViDEa 167 (457)
|+++.++++ |.......+....... . . ...+++++| |+.+..+.+ ...+.++++||+||+
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~----~~~dIiv~T------pek~~~l~~~~~~~l~~v~lvViDEa 144 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD--F---I----KRYDVVILT------SEKADSLIHHDPYIINDVGLIVADEI 144 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh--h---h----ccCCEEEEC------HHHHHHHHhCChhHHhhcCEEEEecc
Confidence 999988763 5554444433221110 0 0 124555554 444444422 123556899999999
Q ss_pred ccccccCCCCHHHHHHHHH-HHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEE-----eCc
Q 012728 168 HCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KDL 241 (457)
Q Consensus 168 h~~~~~~~~~~~~~~~l~~-~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~ 241 (457)
|.+.+.+ +.+.+..+.. +....++.+++++|||+++. .++..|++... +........+...+.. .+.
T Consensus 145 H~l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~ 217 (674)
T PRK01172 145 HIIGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDG 217 (674)
T ss_pred hhccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecc
Confidence 9997644 3334444333 33334578999999999764 45677775331 1111111111111100 000
Q ss_pred hhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhC-------------------------CCceEeecCCCCH
Q 012728 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-------------------------GISCAAYHAGLND 294 (457)
Q Consensus 242 ~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~-------------------------g~~~~~~~~~~~~ 294 (457)
.......+..+++. ..++++||||++++.++.++..|.+. ..++.++||++++
T Consensus 218 ~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~ 297 (674)
T PRK01172 218 YERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSN 297 (674)
T ss_pred cccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCH
Confidence 00001112222322 24678999999999999999888653 1247889999999
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEec---------CCCCHHHHHHHhcccCCCCC--CceEEEEec
Q 012728 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN---------IPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (457)
Q Consensus 295 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~---------~p~s~~~~~Qr~GRagR~g~--~g~~~~~~~ 363 (457)
++|..+++.|++|.++|||||+++++|+|+|+..+|| .+ .|.+..+|.||+|||||.|. .|.++++..
T Consensus 298 ~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 298 EQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred HHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 9999999999999999999999999999999865555 33 25689999999999999985 566777765
Q ss_pred cch-HHHHHHHHH
Q 012728 364 MDD-RRRMEFILS 375 (457)
Q Consensus 364 ~~~-~~~~~~i~~ 375 (457)
..+ .+.++..+.
T Consensus 377 ~~~~~~~~~~~l~ 389 (674)
T PRK01172 377 SPASYDAAKKYLS 389 (674)
T ss_pred CcccHHHHHHHHc
Confidence 443 555666553
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.5e-38 Score=296.84 Aligned_cols=316 Identities=23% Similarity=0.311 Sum_probs=232.2
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC----CCeEEEEcchHHHHHHHHHHHHH-cCCc---eeE
Q 012728 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQVIGLKE-KGIA---GEF 107 (457)
Q Consensus 36 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~----~~~~lvl~P~~~L~~q~~~~~~~-~~~~---~~~ 107 (457)
.-++|.||.......+.+ |.+++.|||-|||+++.+-+... ++++|+++||+.|+.|+.+.+.+ .|++ ...
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ 91 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA 91 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhheee
Confidence 347899999999888776 89999999999999888766532 55899999999999999999998 5664 335
Q ss_pred ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHH-
Q 012728 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS- 186 (457)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~- 186 (457)
+.+......+...|.. .+++++||.++.+.- .....+...+.++|+||||+-.. + + +|..+..
T Consensus 92 ltGev~p~~R~~~w~~-------~kVfvaTPQvveNDl----~~Grid~~dv~~lifDEAHRAvG-n--y--AYv~Va~~ 155 (542)
T COG1111 92 LTGEVRPEEREELWAK-------KKVFVATPQVVENDL----KAGRIDLDDVSLLIFDEAHRAVG-N--Y--AYVFVAKE 155 (542)
T ss_pred ecCCCChHHHHHHHhh-------CCEEEeccHHHHhHH----hcCccChHHceEEEechhhhccC-c--c--hHHHHHHH
Confidence 6666666666666654 689999998885532 23345566689999999999743 1 1 1344433
Q ss_pred HHHhCCCccEEEEeccCChhH--HHHHHHHcCCCCCeEEecC-CC-CC---ceEEEEEEeCch-----------------
Q 012728 187 LRNYLPDVPILALTATAAPKV--QKDVMESLCLQNPLVLKSS-FN-RP---NLFYEVRYKDLL----------------- 242 (457)
Q Consensus 187 ~~~~~~~~~~v~lSAT~~~~~--~~~~~~~~~~~~~~~~~~~-~~-~~---~i~~~~~~~~~~----------------- 242 (457)
......+..+++|||||.... ...+.+.++..+-.+-... .+ ++ .+.......+..
T Consensus 156 y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~ 235 (542)
T COG1111 156 YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPR 235 (542)
T ss_pred HHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHH
Confidence 444445778999999998654 3456666665432222110 00 00 000000000000
Q ss_pred -----------------------------------h--------------------------------------------
Q 012728 243 -----------------------------------D-------------------------------------------- 243 (457)
Q Consensus 243 -----------------------------------~-------------------------------------------- 243 (457)
+
T Consensus 236 Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~ 315 (542)
T COG1111 236 LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATK 315 (542)
T ss_pred HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcc
Confidence 0
Q ss_pred --------------------------------hHHHHHHHHH----HhcCCccEEEEeCCcccHHHHHHHHHhCCCceE-
Q 012728 244 --------------------------------DAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGISCA- 286 (457)
Q Consensus 244 --------------------------------~~~~~l~~~l----~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~- 286 (457)
.|+..+.+++ +..++.++|||++.+++++.+.+.|.+.|..+.
T Consensus 316 ~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~ 395 (542)
T COG1111 316 GGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARV 395 (542)
T ss_pred cchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCccee
Confidence 2333333333 334667999999999999999999999988774
Q ss_pred ee--------cCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceE
Q 012728 287 AY--------HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (457)
Q Consensus 287 ~~--------~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~ 358 (457)
.+ ..||+++++.+++++|++|+++|||||++.++|+|+|++++||+|++..|+.-++||.||+||. +.|.+
T Consensus 396 rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv 474 (542)
T COG1111 396 RFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRV 474 (542)
T ss_pred EEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeE
Confidence 22 3579999999999999999999999999999999999999999999999999999999999998 78999
Q ss_pred EEEeccchHHH
Q 012728 359 LLYYGMDDRRR 369 (457)
Q Consensus 359 ~~~~~~~~~~~ 369 (457)
+++++.+..+.
T Consensus 475 ~vLvt~gtrde 485 (542)
T COG1111 475 VVLVTEGTRDE 485 (542)
T ss_pred EEEEecCchHH
Confidence 99998874433
No 55
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.1e-38 Score=344.03 Aligned_cols=333 Identities=16% Similarity=0.213 Sum_probs=245.6
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHH
Q 012728 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 23 ~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
-+++.+.+++.+|| +|+++|.++++.+++|+|++++||||+|||++++++++. .+.+++|++||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 34566677777899 599999999999999999999999999999976665543 36689999999999999999998
Q ss_pred HcC------CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccccccc
Q 012728 100 EKG------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (457)
Q Consensus 100 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (457)
.++ +.+..++++.........+..+..+. .+++++||+.+.. .+.... ...++++|+||||++++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~-----~~~~l~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLAR-----NFPEMK-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHH-----hHHHHh-hCCCCEEEEECceecccc
Confidence 843 34455667766666555555555544 6787777764422 111122 256899999999999988
Q ss_pred CC---------CCHHHHHH----H-------------------HHHHHhCCC-cc-EEEEeccCChhHHHHHHHHcCCCC
Q 012728 174 GH---------DFRPSYRK----L-------------------SSLRNYLPD-VP-ILALTATAAPKVQKDVMESLCLQN 219 (457)
Q Consensus 174 ~~---------~~~~~~~~----l-------------------~~~~~~~~~-~~-~v~lSAT~~~~~~~~~~~~~~~~~ 219 (457)
|+ +|++.+.. + ......+|+ .+ .+.+|||+++.. +....+ .+
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~--~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKG--DRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchh--HHHHHh--hc
Confidence 76 68777753 1 111122343 33 567899998742 112222 34
Q ss_pred CeEEecCCCCC---ceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCccc---HHHHHHHHHhCCCceEeecCCCC
Q 012728 220 PLVLKSSFNRP---NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (457)
Q Consensus 220 ~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~---~~~l~~~L~~~g~~~~~~~~~~~ 293 (457)
+..+..+..++ ++...+..... ..+ ..+.++++.. +..+||||++++. |+.+++.|.+.|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~-~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEK-IIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCH-HHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 44444444443 33333332221 223 4677777765 4679999999886 489999999999999999995
Q ss_pred HHHHHHHHHHHhcCCceEEEEe----ccccccCCCCC-ccEEEEecCCC---CHHHHHHHh-------------cccCCC
Q 012728 294 DKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (457)
Q Consensus 294 ~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldip~-v~~Vi~~~~p~---s~~~~~Qr~-------------GRagR~ 352 (457)
|...+++|++|+++||||| ++++||||+|+ |++|||||+|+ +++.|.|.. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 58999999999 99999999999 888777765 999999
Q ss_pred CCCceEEEEeccchHHHHHHHHHh
Q 012728 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (457)
Q Consensus 353 g~~g~~~~~~~~~~~~~~~~i~~~ 376 (457)
|.++.++..+...+...++.+++.
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999888877777777777777654
No 56
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=3.4e-38 Score=320.51 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=210.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchhhHHHHHhhhc---C---CCeEEEEcchHHHHHHHHHH
Q 012728 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALA---K---PGIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~~~l~~l~---~---~~~~lvl~P~~~L~~q~~~~ 97 (457)
+....+++..||+ |+|||.++++.+++|+ ++++.+|||||||.++.++.+. . ..+.++++|+|+|+.|.++.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 3445566667998 9999999999999998 5788899999999855433321 1 23556678999999999998
Q ss_pred HHHcCC---------------------------ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH---
Q 012728 98 LKEKGI---------------------------AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM--- 147 (457)
Q Consensus 98 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~--- 147 (457)
+.+++. .+..+.++..... .+..+ ...+.|+++|++++......
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~---q~~~l---~~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND---EWMLD---PHRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHH---HHHhc---CCCCcEEEECHHHHcCCcccccc
Confidence 887542 2233344433222 12222 22368889987666542211
Q ss_pred ---HHH--HhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC---CccEEEEeccCChhHHHHHHHHcCCCC
Q 012728 148 ---SKL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (457)
Q Consensus 148 ---~~l--~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~---~~~~v~lSAT~~~~~~~~~~~~~~~~~ 219 (457)
..+ .....++++.++|+|||| ++.| |......|.......+ +.|+++||||++.+..... ..+. .+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~-~~~~-~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRT-TLLS-AE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHH-HHHc-cC
Confidence 000 011125678999999999 4555 6655555444321112 2689999999988765432 2222 22
Q ss_pred CeEEecC---CCCCceEEEEEEeCchhhHHHH----HHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCC
Q 012728 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAYAD----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (457)
Q Consensus 220 ~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~----l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~ 292 (457)
+..+... .....+...+ ... ...++.. +..++. ..++++||||||++.++.+++.|++.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q~v-~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVKLV-PPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEEEE-ecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222111 1111222211 111 1223322 333333 3557899999999999999999998876 8999999
Q ss_pred CHHHHH-----HHHHHHhc----CC-------ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCc
Q 012728 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (457)
Q Consensus 293 ~~~~r~-----~~~~~f~~----g~-------~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g 356 (457)
++.+|. .++++|++ |+ ..|||||+++++|||++. ++||++..| .++|+||+||+||.|+.+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 78999987 54 689999999999999986 888887776 799999999999999854
Q ss_pred -eEEEEe
Q 012728 357 -KSLLYY 362 (457)
Q Consensus 357 -~~~~~~ 362 (457)
..+.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 335554
No 57
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=5.7e-38 Score=295.17 Aligned_cols=333 Identities=23% Similarity=0.322 Sum_probs=244.6
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHH-HHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHH
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~ 89 (457)
.....+++++++.+.|+. .|++.+.|.|.-++.+ +++|+|.+|+.+|+||||++..++-+. .+++.++++|..+
T Consensus 194 ~~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVA 272 (830)
T COG1202 194 VPVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVA 272 (830)
T ss_pred ccccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHH
Confidence 456678999999999998 5999999999999977 669999999999999999998776443 4899999999999
Q ss_pred HHHHHHHHHHH----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh-hhcCCccEEEE
Q 012728 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAI 164 (457)
Q Consensus 90 L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~-~~~~~l~~lVi 164 (457)
||+|.++.|+. +|....+--+..--...... -.....++.+|+++|.| -...+.+. ..++++..|||
T Consensus 273 LANQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYE------GiD~lLRtg~~lgdiGtVVI 344 (830)
T COG1202 273 LANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYE------GIDYLLRTGKDLGDIGTVVI 344 (830)
T ss_pred hhcchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeech------hHHHHHHcCCcccccceEEe
Confidence 99999999887 44443322111100000000 01223345777777666 33334333 56778999999
Q ss_pred eccccccc--cCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCch
Q 012728 165 DEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (457)
Q Consensus 165 DEah~~~~--~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 242 (457)
||+|.+.+ .|+..- --+.+++..+|++|++++|||..+.. .+...++..- +.+.. ..-.+..........
T Consensus 345 DEiHtL~deERG~RLd---GLI~RLr~l~~~AQ~i~LSATVgNp~--elA~~l~a~l-V~y~~--RPVplErHlvf~~~e 416 (830)
T COG1202 345 DEIHTLEDEERGPRLD---GLIGRLRYLFPGAQFIYLSATVGNPE--ELAKKLGAKL-VLYDE--RPVPLERHLVFARNE 416 (830)
T ss_pred eeeeeccchhcccchh---hHHHHHHHhCCCCeEEEEEeecCChH--HHHHHhCCee-EeecC--CCCChhHeeeeecCc
Confidence 99999965 454322 34677888889999999999998873 4566665431 11111 111222333333333
Q ss_pred hhHHHHHHHHHHhc--------CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEE
Q 012728 243 DDAYADLCSVLKAN--------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (457)
Q Consensus 243 ~~~~~~l~~~l~~~--------~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLva 314 (457)
.+|...+.++.+.. -.+++|||++|+..|..++..|..+|+++..||++++..+|..+...|.++++.++|+
T Consensus 417 ~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 417 SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEee
Confidence 56666666666542 3568999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccCCCCCccEEE---EecCC-CCHHHHHHHhcccCCCCC--CceEEEEecc
Q 012728 315 TVAFGMGIDRKDVRLVC---HFNIP-KSMEAFYQESGRAGRDQL--PSKSLLYYGM 364 (457)
Q Consensus 315 T~~~~~Gldip~v~~Vi---~~~~p-~s~~~~~Qr~GRagR~g~--~g~~~~~~~~ 364 (457)
|.+++.|+|+|.-.+|+ -++.- .|+.+|.|+.|||||.+- .|++++++.+
T Consensus 497 TAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvep 552 (830)
T COG1202 497 TAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEP 552 (830)
T ss_pred hhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecC
Confidence 99999999999654443 12332 389999999999999875 4677777654
No 58
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.3e-37 Score=331.59 Aligned_cols=287 Identities=23% Similarity=0.271 Sum_probs=202.0
Q ss_pred EEcCCCchhhHHHHHhhhcC----------------CCeEEEEcchHHHHHHHHHHHHH----------------cCCce
Q 012728 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (457)
Q Consensus 58 v~a~TGsGKT~~~~l~~l~~----------------~~~~lvl~P~~~L~~q~~~~~~~----------------~~~~~ 105 (457)
|+||||||||++|.+|++.+ +.++|||+|+++|+.|+.+.++. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999987632 35799999999999999998763 23455
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcCCccEEEEeccccccc--cCCCCHHH
Q 012728 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISS--WGHDFRPS 180 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~~l~~lViDEah~~~~--~~~~~~~~ 180 (457)
...++......+..... .. .+|+++||+ .+..+.. ...++++++|||||+|.+.+ +|..+...
T Consensus 81 ~vrtGDt~~~eR~rll~----~p--pdILVTTPE------sL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~ 148 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR----NP--PDILITTPE------SLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALS 148 (1490)
T ss_pred EEEECCCCHHHHHHHhc----CC--CCEEEecHH------HHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHH
Confidence 55666665554433221 12 466666555 4433321 22466799999999999975 46555555
Q ss_pred HHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCC--ceEEEEEEeCch---------------
Q 012728 181 YRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP--NLFYEVRYKDLL--------------- 242 (457)
Q Consensus 181 ~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~--------------- 242 (457)
+.++..+ .+ +.|+|++|||+++. +++.++++...+..+....... ++.+.+...+..
T Consensus 149 LeRL~~l---~~~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~ 223 (1490)
T PRK09751 149 LERLDAL---LHTSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHA 223 (1490)
T ss_pred HHHHHHh---CCCCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccch
Confidence 5555443 43 68999999999885 5677888766555443322222 222211111100
Q ss_pred ---h----hHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC---------------------------------
Q 012728 243 ---D----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG--------------------------------- 282 (457)
Q Consensus 243 ---~----~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g--------------------------------- 282 (457)
. .....+...+. .+.++||||||+..|+.++..|++..
T Consensus 224 ~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (1490)
T PRK09751 224 GREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDV 301 (1490)
T ss_pred hhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccc
Confidence 0 00111222222 35679999999999999999997641
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC-CCCceEEEE
Q 012728 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLY 361 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~-g~~g~~~~~ 361 (457)
..+..|||+++.++|..+++.|++|++++||||+.+++|||++++++||+++.|.++.+|+||+||+||. |..+.++++
T Consensus 302 ~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 302 FIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred eeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 1256899999999999999999999999999999999999999999999999999999999999999996 334555544
Q ss_pred ec
Q 012728 362 YG 363 (457)
Q Consensus 362 ~~ 363 (457)
..
T Consensus 382 p~ 383 (1490)
T PRK09751 382 PR 383 (1490)
T ss_pred eC
Confidence 33
No 59
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.8e-36 Score=324.00 Aligned_cols=307 Identities=20% Similarity=0.259 Sum_probs=213.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 25 ~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
++.+.+++.+|+ .|+++|..+++.+++|+|++++||||+|||..+++.++ ..+.+++|++||++|+.|+.+.++.+
T Consensus 68 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l 146 (1176)
T PRK09401 68 EFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKF 146 (1176)
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHH
Confidence 445566666788 69999999999999999999999999999964443332 23789999999999999999999986
Q ss_pred CCc----eeEecCCCc--HHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCC
Q 012728 102 GIA----GEFLSSTQT--MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (457)
Q Consensus 102 ~~~----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~ 175 (457)
+.. ......+.. ..........+..+. .+|+ ++||+++...........++++|+||||++++++.
T Consensus 147 ~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~Il------V~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k 218 (1176)
T PRK09401 147 GEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDIL------VTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSK 218 (1176)
T ss_pred hhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEE------EECHHHHHHHHHhccccccCEEEEEChHHhhhccc
Confidence 543 222222221 222333333343333 4554 55556665554444555699999999999987542
Q ss_pred C---------CH-H-----------------HHHHHHHHHHhCC-----CccEEEEeccCChhHHH-HHHHHcCCCCCeE
Q 012728 176 D---------FR-P-----------------SYRKLSSLRNYLP-----DVPILALTATAAPKVQK-DVMESLCLQNPLV 222 (457)
Q Consensus 176 ~---------~~-~-----------------~~~~l~~~~~~~~-----~~~~v~lSAT~~~~~~~-~~~~~~~~~~~~~ 222 (457)
+ |. . .+..+..+..... +.|++++|||+++.... .+...+. ...+
T Consensus 219 ~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll--~~~v 296 (1176)
T PRK09401 219 NIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL--GFEV 296 (1176)
T ss_pred chhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc--eEEe
Confidence 2 32 1 1222333332221 57899999999875332 2222110 0011
Q ss_pred EecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCccc---HHHHHHHHHhCCCceEeecCCCCHHHHHH
Q 012728 223 LKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKARSS 299 (457)
Q Consensus 223 ~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~---~~~l~~~L~~~g~~~~~~~~~~~~~~r~~ 299 (457)
-.......++...+.... ++...+.++++..+ .++||||+++.. ++.+++.|+..|+++..+||++ + .
T Consensus 297 ~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~--~ 367 (1176)
T PRK09401 297 GSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E--R 367 (1176)
T ss_pred cCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H--H
Confidence 111223344544443332 45566777776654 469999999988 9999999999999999999999 2 2
Q ss_pred HHHHHhcCCceEEEE----eccccccCCCCC-ccEEEEecCCC------CHHHHHHHhcccCC
Q 012728 300 VLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAGR 351 (457)
Q Consensus 300 ~~~~f~~g~~~vLva----T~~~~~Gldip~-v~~Vi~~~~p~------s~~~~~Qr~GRagR 351 (457)
.+++|++|+++|||| |++++||||+|+ +++|||||+|. ....|.||+||+..
T Consensus 368 ~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 368 KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 359999999999999 699999999999 89999999998 67889999999863
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=4.7e-36 Score=303.49 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchhhHH---------HHHhh---hc------CCCeEEEEcchHHHHHHHHHHHHH-c
Q 012728 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPA---LA------KPGIVLVVSPLIALMENQVIGLKE-K 101 (457)
Q Consensus 41 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~---------~~l~~---l~------~~~~~lvl~P~~~L~~q~~~~~~~-~ 101 (457)
.+|+++++.+++|++++++|+||+|||.+ |+++. +. ..+.+++++|+++|+.|...++.. .
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999986 33322 22 245899999999999998888865 2
Q ss_pred CC------ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCC
Q 012728 102 GI------AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (457)
Q Consensus 102 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~ 175 (457)
|. ......++... ... ..... ..+++++|+.+. ...+..+++|||||||.+...+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~----~~~-~t~~k--~~~Ilv~T~~L~-----------l~~L~~v~~VVIDEaHEr~~~~D 308 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPD----ELI-NTNPK--PYGLVFSTHKLT-----------LNKLFDYGTVIIDEVHEHDQIGD 308 (675)
T ss_pred CccccCCceEEEEECCcch----HHh-hcccC--CCCEEEEeCccc-----------ccccccCCEEEccccccCccchh
Confidence 22 22333333321 000 01111 245666664321 12355689999999999977652
Q ss_pred CCHHHHHHHHHHHHhC-C-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC-CCCceEEEEEEeC--------c-hh
Q 012728 176 DFRPSYRKLSSLRNYL-P-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRPNLFYEVRYKD--------L-LD 243 (457)
Q Consensus 176 ~~~~~~~~l~~~~~~~-~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~--------~-~~ 243 (457)
.+..+.... + ..++++||||++.+... +..++. ++..+..+. ....+...+.... . ..
T Consensus 309 -------llL~llk~~~~~~rq~ILmSATl~~dv~~-l~~~~~--~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~ 378 (675)
T PHA02653 309 -------IIIAVARKHIDKIRSLFLMTATLEDDRDR-IKEFFP--NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEE 378 (675)
T ss_pred -------HHHHHHHHhhhhcCEEEEEccCCcHhHHH-HHHHhc--CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHH
Confidence 222222222 2 24899999999877543 445443 444443321 1122222221110 0 11
Q ss_pred hHHHHHHHHHHh---cCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHH-hcCCceEEEEecc
Q 012728 244 DAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVA 317 (457)
Q Consensus 244 ~~~~~l~~~l~~---~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f-~~g~~~vLvaT~~ 317 (457)
.+ ..+...+.. ..++++|||++++.+++.+++.|++. ++.+..+||++++. .+.+++| ++|+.+|||||++
T Consensus 379 ~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdI 455 (675)
T PHA02653 379 EK-KNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPY 455 (675)
T ss_pred HH-HHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccCh
Confidence 11 122233322 23567999999999999999999987 78999999999975 4666777 6899999999999
Q ss_pred ccccCCCCCccEEEEec---CCC---------CHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHH
Q 012728 318 FGMGIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (457)
Q Consensus 318 ~~~Gldip~v~~Vi~~~---~p~---------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i 373 (457)
+++|||+|+|++||++| .|. |.++|.||+|||||. ++|.|+.+++..+...+..+
T Consensus 456 AERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 456 LESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred hhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 99999999999999998 565 889999999999999 79999999998776544433
No 61
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2e-36 Score=293.36 Aligned_cols=299 Identities=18% Similarity=0.134 Sum_probs=188.2
Q ss_pred CEEEEcCCCchhhHHHHHhhhc-----CCCeEEEEcchHHHHHHHHHHHHHc-CCceeEecCCCcHHH---------HHH
Q 012728 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQV---------KTK 119 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~---------~~~ 119 (457)
++++.||||+|||.+|+++++. ...++++++|+++|+.|+.++++.+ +......++...... ...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 5799999999999999998873 3679999999999999999999985 544433333221100 000
Q ss_pred HHHHhhcCCCcccEEEECCCcccCchhHHHHH---------hhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 012728 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---------KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (457)
Q Consensus 120 ~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~---------~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~ 190 (457)
....... +...+...+.+++||+.+.... ..... ..+++|+||+|.+.+++. .. +..+.....
T Consensus 81 ~~~~~~~---~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~-~~~~iViDE~h~~~~~~~--~~-l~~~l~~l~- 152 (358)
T TIGR01587 81 LFPLYIH---SNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASI-ANSLLIFDEVHFYDEYTL--AL-ILAVLEVLK- 152 (358)
T ss_pred HHHHHhh---chhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHh-cCCEEEEeCCCCCCHHHH--HH-HHHHHHHHH-
Confidence 0000000 0111222333444444332221 11111 137899999999987542 22 222222222
Q ss_pred CCCccEEEEeccCChhHHHHHHHHcCCC-CCeEEecCCCCCceEEEEEE-eCchhhHHHHHHHHHHh-cCCccEEEEeCC
Q 012728 191 LPDVPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVRY-KDLLDDAYADLCSVLKA-NGDTCAIVYCLE 267 (457)
Q Consensus 191 ~~~~~~v~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~~l~~-~~~~~~iIf~~s 267 (457)
..+.|++++|||++..... +....... .+...............+.. ......+...+..+++. ..++++||||++
T Consensus 153 ~~~~~~i~~SATlp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t 231 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKE-YAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNT 231 (358)
T ss_pred HcCCCEEEEecCchHHHHH-HHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECC
Confidence 2378999999999865433 33222221 11111111000000111111 11111233344444443 346789999999
Q ss_pred cccHHHHHHHHHhCCC--ceEeecCCCCHHHHHH----HHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHH
Q 012728 268 RTTCDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341 (457)
Q Consensus 268 ~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~r~~----~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~ 341 (457)
+++++.+++.|++.+. .+..+||++++.+|.. +++.|++|+..|||||+++++|+|++ +++||++..| +.+
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~ 308 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDS 308 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHH
Confidence 9999999999998766 4999999999999976 48899999999999999999999996 8899988776 889
Q ss_pred HHHHhcccCCCCCCc----eEEEEeccc
Q 012728 342 FYQESGRAGRDQLPS----KSLLYYGMD 365 (457)
Q Consensus 342 ~~Qr~GRagR~g~~g----~~~~~~~~~ 365 (457)
|+||+||+||.|+.+ ..+++....
T Consensus 309 ~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 309 LIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999988542 556665443
No 62
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.8e-35 Score=283.51 Aligned_cols=299 Identities=18% Similarity=0.190 Sum_probs=192.8
Q ss_pred HHHHHHHHHHcCCC--EEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC--------CceeEecCC
Q 012728 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG--------IAGEFLSST 111 (457)
Q Consensus 42 ~Q~~~i~~~~~~~~--~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~--------~~~~~~~~~ 111 (457)
+|.++++.+.++++ +++.||||+|||.+|+++++....++++++|+++|++|+.++++.+. .....+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998864 78899999999999999999888889999999999999999988742 112222222
Q ss_pred CcHHHHHHHH---HHhhcCCCccc-----EEEECCC-cccCchhHHHHHhhh----------hcCCccEEEEeccccccc
Q 012728 112 QTMQVKTKIY---EDLDSGKPSLR-----LLYVTPE-LTATPGFMSKLKKIH----------SRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 112 ~~~~~~~~~~---~~~~~~~~~~~-----i~~~t~~-~i~t~~~~~~l~~~~----------~~~~l~~lViDEah~~~~ 172 (457)
.... ..... .....+..... +-..+|+ ++++|..+..+.+.. ....++++|+||+|.+..
T Consensus 81 ~~~d-~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 81 TLKD-IKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred chHH-HHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1111 00110 00000000000 0011233 333455544432211 235689999999999876
Q ss_pred cCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC------------C------C---C
Q 012728 173 WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N------R---P 230 (457)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~------------~------~---~ 230 (457)
++......+.....+.... ...+++++|||+++.....+........+....... . + +
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLP 239 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceecc
Confidence 5543333222222222222 257999999999988777666543233333222211 0 1 2
Q ss_pred ceEEEEEEeCc-hhhHHHHHHH----HHHhcCCccEEEEeCCcccHHHHHHHHHhCC--CceEeecCCCCHHHHHHHHHH
Q 012728 231 NLFYEVRYKDL-LDDAYADLCS----VLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDD 303 (457)
Q Consensus 231 ~i~~~~~~~~~-~~~~~~~l~~----~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~r~~~~~~ 303 (457)
.+...+..... ....+..+.+ .++..+++++||||+|+..++.+++.|++.+ +.+..+||.+++.+|.+.
T Consensus 240 ~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~--- 316 (357)
T TIGR03158 240 PVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA--- 316 (357)
T ss_pred ceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh---
Confidence 44444433221 1122222223 2233456789999999999999999999865 578899999999888653
Q ss_pred HhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccC
Q 012728 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (457)
Q Consensus 304 f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRag 350 (457)
++.+|||||+++++|||+|.+ +|| ++ |.+..+|+||+||+|
T Consensus 317 ---~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ---MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ---ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 478999999999999999986 555 55 899999999999997
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.2e-36 Score=300.75 Aligned_cols=296 Identities=16% Similarity=0.113 Sum_probs=200.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh---hcC-CCeEEEEcchHHHHHHHHHHHHHcCCcee----Ee
Q 012728 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIAGE----FL 108 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~---l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~~~~----~~ 108 (457)
..|+++|.++++.++++++.++++|||+|||+++...+ +.. ..++||++||++|+.|+.++++.++.... .+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999998765432 233 34999999999999999999998653211 11
Q ss_pred cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012728 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
.++.. ...+..++++|+..+. ...+ ..+..+++||+||||++.+ ..+..+.
T Consensus 193 ~~g~~-------------~~~~~~I~VaT~qsl~------~~~~-~~~~~~~~iIvDEaH~~~~---------~~~~~il 243 (501)
T PHA02558 193 YSGTA-------------KDTDAPIVVSTWQSAV------KQPK-EWFDQFGMVIVDECHLFTG---------KSLTSII 243 (501)
T ss_pred ecCcc-------------cCCCCCEEEeeHHHHh------hchh-hhccccCEEEEEchhcccc---------hhHHHHH
Confidence 11110 0112456665555432 2211 1245689999999999865 2234444
Q ss_pred HhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC-------CCCceEEEE-EE--e----------C-------
Q 012728 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------NRPNLFYEV-RY--K----------D------- 240 (457)
Q Consensus 189 ~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~~~-~~--~----------~------- 240 (457)
..++ ..++++||||+........ ...++..+....... ......+.. .. . .
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~-~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANIL-QYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HhhhccceEEEEeccCCCccccHH-HHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 5554 4579999999975432111 111111111111100 000000000 00 0 0
Q ss_pred --chhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe-
Q 012728 241 --LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (457)
Q Consensus 241 --~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT- 315 (457)
....+...+..+... ..+.+++||+++.++++.+++.|++.|.++..+||+++.++|..+++.|++|+..|||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 000111222222221 245678999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEe
Q 012728 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~ 362 (457)
+++++|+|+|++++||++.++.|...|+||+||++|.+..+...+++
T Consensus 403 ~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 403 GVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred ceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 89999999999999999999999999999999999987655444444
No 64
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1e-35 Score=293.83 Aligned_cols=321 Identities=24% Similarity=0.349 Sum_probs=210.9
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHHHHHHHHHHHHcCCceeE--
Q 012728 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIAGEF-- 107 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~-- 107 (457)
+.-.+|+||.+.+..++ |+|+++++|||+|||+++...++.. .+++|+++|++-|+.||...+..++.....
T Consensus 59 ~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~ 137 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTG 137 (746)
T ss_pred CcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCccccee
Confidence 34479999999999988 9999999999999999988877654 789999999999999999888887755222
Q ss_pred ecCC-CcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHH
Q 012728 108 LSST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (457)
Q Consensus 108 ~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~ 186 (457)
..++ .....+...+ ...+++++||.++...-.-.... .++.+.++||||||+-.. ++.|-.....+..
T Consensus 138 ~l~~~~~~~~r~~i~-------~s~~vff~TpQil~ndL~~~~~~---~ls~fs~iv~DE~Hra~k-n~~Y~~Vmr~~l~ 206 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIV-------ASKRVFFRTPQILENDLKSGLHD---ELSDFSLIVFDECHRTSK-NHPYNNIMREYLD 206 (746)
T ss_pred eccCccCCCchhhhh-------cccceEEeChHhhhhhccccccc---ccceEEEEEEcccccccc-cccHHHHHHHHHH
Confidence 1111 1111121121 13678888887765422111111 145688999999999754 2223322222222
Q ss_pred HHHhCCCccEEEEeccCChhHHHH--HHHHcCCC----CC---------------eE--E--------------------
Q 012728 187 LRNYLPDVPILALTATAAPKVQKD--VMESLCLQ----NP---------------LV--L-------------------- 223 (457)
Q Consensus 187 ~~~~~~~~~~v~lSAT~~~~~~~~--~~~~~~~~----~~---------------~~--~-------------------- 223 (457)
.... ..|+++||||+....... ....+... .. .. +
T Consensus 207 ~k~~--~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~ 284 (746)
T KOG0354|consen 207 LKNQ--GNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQ 284 (746)
T ss_pred hhhc--cccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHH
Confidence 2222 349999999998643221 11111100 00 00 0
Q ss_pred -------------ecCCCC----------Cce----E--------------------EE--------------EEEe---
Q 012728 224 -------------KSSFNR----------PNL----F--------------------YE--------------VRYK--- 239 (457)
Q Consensus 224 -------------~~~~~~----------~~i----~--------------------~~--------------~~~~--- 239 (457)
...+.. ++. . +. +...
T Consensus 285 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~ 364 (746)
T KOG0354|consen 285 QLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYL 364 (746)
T ss_pred HHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHH
Confidence 000000 000 0 00 0000
Q ss_pred --------------------------CchhhHHHHHHHHHH----hcCCccEEEEeCCcccHHHHHHHHHhC---CCceE
Q 012728 240 --------------------------DLLDDAYADLCSVLK----ANGDTCAIVYCLERTTCDELSAYLSAG---GISCA 286 (457)
Q Consensus 240 --------------------------~~~~~~~~~l~~~l~----~~~~~~~iIf~~s~~~~~~l~~~L~~~---g~~~~ 286 (457)
+....+++.+.+.+. ..+..++|||+.+++.|..+..+|.+. |+...
T Consensus 365 ~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~ 444 (746)
T KOG0354|consen 365 KLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAE 444 (746)
T ss_pred HHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccc
Confidence 000034444444433 246778999999999999999999832 33333
Q ss_pred ee--------cCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceE
Q 012728 287 AY--------HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKS 358 (457)
Q Consensus 287 ~~--------~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~ 358 (457)
.+ ..+|+++++.+++++|++|+++|||||+++++|+||+.|++||.||...|+...+||.|| ||. +.|++
T Consensus 445 ~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~ 522 (746)
T KOG0354|consen 445 IFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKC 522 (746)
T ss_pred eeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeE
Confidence 33 247999999999999999999999999999999999999999999999999999999999 997 57888
Q ss_pred EEEeccchHHHHH
Q 012728 359 LLYYGMDDRRRME 371 (457)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (457)
+++++..+...++
T Consensus 523 vll~t~~~~~~~E 535 (746)
T KOG0354|consen 523 VLLTTGSEVIEFE 535 (746)
T ss_pred EEEEcchhHHHHH
Confidence 8888855544443
No 65
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=6.5e-35 Score=299.04 Aligned_cols=320 Identities=21% Similarity=0.268 Sum_probs=229.0
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhhhcC----CCeEEEEcchHHHHHHH
Q 012728 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAK----PGIVLVVSPLIALMENQ 94 (457)
Q Consensus 20 ~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~----~~~~lvl~P~~~L~~q~ 94 (457)
..+.+.+...++. .|+.++.|.|+.++.... +++|+++++|||+|||+++++.++.. ++++++++|+++||.|.
T Consensus 14 ~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 14 VKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 3467778888876 699899999999887765 55999999999999999999888654 57999999999999999
Q ss_pred HHHHH---HcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhh--hcCCccEEEEecccc
Q 012728 95 VIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEAHC 169 (457)
Q Consensus 95 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~--~~~~l~~lViDEah~ 169 (457)
+++++ .+|+++....+........ + ...+|+++||| .+..+.+.. -...+++|||||+|.
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~~~-----l----~~~~ViVtT~E------K~Dsl~R~~~~~~~~V~lvViDEiH~ 157 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDDER-----L----ARYDVIVTTPE------KLDSLTRKRPSWIEEVDLVVIDEIHL 157 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccchhh-----h----ccCCEEEEchH------HhhHhhhcCcchhhcccEEEEeeeee
Confidence 99988 6899998888776533211 1 12566666655 444332221 234589999999999
Q ss_pred cccc--CCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCe-EEec-CCCCCce-EEEEEEeC----
Q 012728 170 ISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKS-SFNRPNL-FYEVRYKD---- 240 (457)
Q Consensus 170 ~~~~--~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~i-~~~~~~~~---- 240 (457)
+.+. |.-.+ ..+.+.+...+..+++++|||+++. .++..|++-.... .... +..++.. ...+....
T Consensus 158 l~d~~RG~~lE---~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k 232 (766)
T COG1204 158 LGDRTRGPVLE---SIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK 232 (766)
T ss_pred cCCcccCceeh---hHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc
Confidence 9763 43222 2234445555568999999999988 4678888766442 1111 1112111 11111111
Q ss_pred -----chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC---------------------C------------
Q 012728 241 -----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------G------------ 282 (457)
Q Consensus 241 -----~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~---------------------g------------ 282 (457)
.....+..+.+.+ ..+++++|||+|+..+...+..|... +
T Consensus 233 ~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~ 310 (766)
T COG1204 233 TWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELA 310 (766)
T ss_pred cccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHH
Confidence 0011122222222 35678999999999999999888730 0
Q ss_pred ----CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE----Eec-----CCCCHHHHHHHhccc
Q 012728 283 ----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRA 349 (457)
Q Consensus 283 ----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi----~~~-----~p~s~~~~~Qr~GRa 349 (457)
..+.++|++++.++|..+.+.|+.|.++||+||+.+++|+|+|.-++|| .|+ .+-++.++.|+.|||
T Consensus 311 e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRA 390 (766)
T COG1204 311 ELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRA 390 (766)
T ss_pred HHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcC
Confidence 1467899999999999999999999999999999999999999777776 466 456799999999999
Q ss_pred CCCCC--CceEEEEe
Q 012728 350 GRDQL--PSKSLLYY 362 (457)
Q Consensus 350 gR~g~--~g~~~~~~ 362 (457)
||.|- .|.++++.
T Consensus 391 GRPg~d~~G~~~i~~ 405 (766)
T COG1204 391 GRPGYDDYGEAIILA 405 (766)
T ss_pred CCCCcCCCCcEEEEe
Confidence 99874 46666666
No 66
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.6e-34 Score=300.23 Aligned_cols=335 Identities=23% Similarity=0.274 Sum_probs=245.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHHHHHHHH
Q 012728 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L~~q~~~ 96 (457)
....+..+|.+ .|...|+++|.+|+..+.+|+|++|..|||||||.+|++|++.+ ..++|+|.||+||+++|.+
T Consensus 55 ~~~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~ 133 (851)
T COG1205 55 RDESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAE 133 (851)
T ss_pred hhhHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHH
Confidence 44445777877 58888999999999999999999999999999999999999875 5578999999999999999
Q ss_pred HHHHc----C--CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccc
Q 012728 97 GLKEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (457)
Q Consensus 97 ~~~~~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (457)
+++++ + +....+++......+..++. ++ .+|++++|+++........-.......++++||+||+|..
T Consensus 134 rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~p--p~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtY 207 (851)
T COG1205 134 RLRELISDLPGKVTFGRYTGDTPPEERRAIIR----NP--PDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTY 207 (851)
T ss_pred HHHHHHHhCCCcceeeeecCCCChHHHHHHHh----CC--CCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceec
Confidence 99873 3 45555666666655543332 22 7777777775533111111122233444999999999998
Q ss_pred -cccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeE-EecCCCCCceEEEEEEeC-c-----
Q 012728 171 -SSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKD-L----- 241 (457)
Q Consensus 171 -~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~-~----- 241 (457)
.-.|.++...+.++..+.+..+ +.++|+.|||..+... ....+....... +..+.......+.+...+ .
T Consensus 208 rGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e--~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~ 285 (851)
T COG1205 208 RGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE--FAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAE 285 (851)
T ss_pred cccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH--HHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhh
Confidence 4456667777777777777666 6889999999987742 244333333333 433322222222222221 0
Q ss_pred --hhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHH----HHHHhCC----CceEeecCCCCHHHHHHHHHHHhcCCc
Q 012728 242 --LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRK 309 (457)
Q Consensus 242 --~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~----~~L~~~g----~~~~~~~~~~~~~~r~~~~~~f~~g~~ 309 (457)
.......+..+... .++-++|+|+.++..++.++ ..+...+ ..+..|++++..++|..+...|++|+.
T Consensus 286 ~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~ 365 (851)
T COG1205 286 SIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGEL 365 (851)
T ss_pred hcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCc
Confidence 01222233333222 25678999999999999997 4444445 568999999999999999999999999
Q ss_pred eEEEEeccccccCCCCCccEEEEecCCC-CHHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 310 ~vLvaT~~~~~Gldip~v~~Vi~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
.++++|++++-|+|+.+++.||.++.|. +..+++||.||+||.++.+..+..+..+
T Consensus 366 ~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 366 LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9999999999999999999999999999 9999999999999999777777666543
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.4e-33 Score=281.01 Aligned_cols=322 Identities=22% Similarity=0.209 Sum_probs=226.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH----
Q 012728 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE---- 100 (457)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~---- 100 (457)
++....+|.. |+|+|..+++.++.|+ ++.+.||+|||++|.+|++.. +..++|++||++||.|.++.+..
T Consensus 94 Ea~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 94 EASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred HHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 3344456766 8899999999999998 999999999999999999864 78999999999999998888776
Q ss_pred cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH----------------------hhhhcCC
Q 012728 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK----------------------KIHSRGL 158 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~----------------------~~~~~~~ 158 (457)
+|+.+..+.++.....+...+ .++|+++|..-+.-.-....+. .......
T Consensus 171 lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 171 LGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred cCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 578887777766543322211 2688998876332111111110 0112344
Q ss_pred ccEEEEecccccc-ccC------------CCCHHHHHHHHHHHHhC----------------------------------
Q 012728 159 LNLVAIDEAHCIS-SWG------------HDFRPSYRKLSSLRNYL---------------------------------- 191 (457)
Q Consensus 159 l~~lViDEah~~~-~~~------------~~~~~~~~~l~~~~~~~---------------------------------- 191 (457)
+.+.||||+|.++ +.. .+....|.....+...+
T Consensus 243 ~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~ 322 (656)
T PRK12898 243 LHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPP 322 (656)
T ss_pred cceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchh
Confidence 7899999999884 200 00011111111111000
Q ss_pred ----------------------------------------------CC--------------------------------
Q 012728 192 ----------------------------------------------PD-------------------------------- 193 (457)
Q Consensus 192 ----------------------------------------------~~-------------------------------- 193 (457)
++
T Consensus 323 ~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q 402 (656)
T PRK12898 323 AWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQ 402 (656)
T ss_pred hcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHH
Confidence 00
Q ss_pred ------ccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCce--EEEEEEeCchhhHHHHHHHHHHhc--CCccEEE
Q 012728 194 ------VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL--FYEVRYKDLLDDAYADLCSVLKAN--GDTCAIV 263 (457)
Q Consensus 194 ------~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~iI 263 (457)
.++.+||||.+.. ..++...+++. + +..+.+++.. ...........+|...|.+.++.. .+.++||
T Consensus 403 ~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~-v--v~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLI 478 (656)
T PRK12898 403 RFFRRYLRLAGMTGTAREV-AGELWSVYGLP-V--VRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLV 478 (656)
T ss_pred HHHHhhHHHhcccCcChHH-HHHHHHHHCCC-e--EEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 0256788888754 45666666654 2 2333444433 111112222356778888887663 3567999
Q ss_pred EeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC---Ccc-----EEEEecC
Q 012728 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNI 335 (457)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip---~v~-----~Vi~~~~ 335 (457)
||+|++.++.+++.|.+.|+++..+||+++..+ ..+..|+.+...|+|||++++||+||+ +|. +||+|+.
T Consensus 479 ft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~ 556 (656)
T PRK12898 479 GTRSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTER 556 (656)
T ss_pred EeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCC
Confidence 999999999999999999999999999866544 445556666667999999999999999 676 9999999
Q ss_pred CCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 336 p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
|.|...|.||+||+||.|.+|.+++|++.+|
T Consensus 557 P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 557 HDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred CCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999999999999765
No 68
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.7e-34 Score=297.50 Aligned_cols=303 Identities=17% Similarity=0.144 Sum_probs=208.5
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH-cCCceeEecCCCcHHHH
Q 012728 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVK 117 (457)
Q Consensus 42 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~ 117 (457)
+-.+.+..+.++++++++|+||||||..+.++++.. +++++|+.|+|++|.|..+++.. ++.......+......
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~- 84 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE- 84 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc-
Confidence 334566667778899999999999999999888754 57899999999999999998864 4332111000000000
Q ss_pred HHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHhC-CCc
Q 012728 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYL-PDV 194 (457)
Q Consensus 118 ~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lViDEah~-~~~~~~~~~~~~~~l~~~~~~~-~~~ 194 (457)
.......+|.++|+ |.+..+ .+...+..+++|||||+|. .++.+ +.. ..+..+...+ ++.
T Consensus 85 -------~~~s~~t~I~v~T~------G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~D--l~L--~ll~~i~~~lr~dl 147 (819)
T TIGR01970 85 -------NKVSRRTRLEVVTE------GILTRMIQDDPELDGVGALIFDEFHERSLDAD--LGL--ALALDVQSSLREDL 147 (819)
T ss_pred -------cccCCCCcEEEECC------cHHHHHHhhCcccccCCEEEEeccchhhhccc--hHH--HHHHHHHHhcCCCc
Confidence 00111245555554 444333 3445677899999999995 44422 211 1223333333 478
Q ss_pred cEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhh----HHHHHHHHHHhcCCccEEEEeCCccc
Q 012728 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDD----AYADLCSVLKANGDTCAIVYCLERTT 270 (457)
Q Consensus 195 ~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~iIf~~s~~~ 270 (457)
++++||||++.... ..+++ ..+.+....... .+...+........ ....+..+++. ..+.+|||+++..+
T Consensus 148 qlIlmSATl~~~~l---~~~l~-~~~vI~~~gr~~-pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~e 221 (819)
T TIGR01970 148 KILAMSATLDGERL---SSLLP-DAPVVESEGRSF-PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAE 221 (819)
T ss_pred eEEEEeCCCCHHHH---HHHcC-CCcEEEecCcce-eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHH
Confidence 99999999997653 33332 223332222111 12222221111111 12234444444 35679999999999
Q ss_pred HHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC----------
Q 012728 271 CDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------- 337 (457)
Q Consensus 271 ~~~l~~~L~~---~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~---------- 337 (457)
++.+++.|++ .++.+..+||++++++|..+++.|.+|+.+|||||+++++|||||+|++||+++.|+
T Consensus 222 I~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~ 301 (819)
T TIGR01970 222 IRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGI 301 (819)
T ss_pred HHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCC
Confidence 9999999987 478899999999999999999999999999999999999999999999999999875
Q ss_pred --------CHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 012728 338 --------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (457)
Q Consensus 338 --------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~ 369 (457)
|..+|.||.|||||. ++|.|+.+++..+...
T Consensus 302 ~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 302 TRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred ceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 345699999999999 7999999999876544
No 69
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2e-34 Score=290.26 Aligned_cols=305 Identities=17% Similarity=0.165 Sum_probs=208.0
Q ss_pred CCCHHHHHHHHHHHc-C--CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC-Ccee---EecC
Q 012728 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IAGE---FLSS 110 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~-~~~~---~~~~ 110 (457)
++||||++++..+.. | +..++++|||+|||++.+..+.....++|||||+..|+.||.+++.++. +... .+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999998874 3 3789999999999999876666667889999999999999999999853 2211 1111
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH----HHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHH
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~----~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~ 186 (457)
... .. ......++++|+.++...... ...........+++||+||||++.. .....
T Consensus 335 ~~k----~~-------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---------~~fr~ 394 (732)
T TIGR00603 335 DAK----ER-------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---------AMFRR 394 (732)
T ss_pred Ccc----cc-------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---------HHHHH
Confidence 110 00 001256777777766432111 1112223334589999999999854 22333
Q ss_pred HHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC-------CCCceEE-EEEEe-------------------
Q 012728 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------NRPNLFY-EVRYK------------------- 239 (457)
Q Consensus 187 ~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~-~~~~~------------------- 239 (457)
+...+.....++|||||..+... ......+..|.++..+. ...+..+ .+...
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 44445556789999999754322 11111122344332221 0111111 11100
Q ss_pred --CchhhHHHHHHHHHHhc--CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CceEEEE
Q 012728 240 --DLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVA 314 (457)
Q Consensus 240 --~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLva 314 (457)
.....|+..+..+++.+ .+.++||||++...++.++..| .+..+||++++.+|..+++.|++| .+++||+
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 01123445555556543 6779999999999888888877 256789999999999999999865 8899999
Q ss_pred eccccccCCCCCccEEEEecCC-CCHHHHHHHhcccCCCCCCceE-------EEEeccchHH
Q 012728 315 TVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDRR 368 (457)
Q Consensus 315 T~~~~~Gldip~v~~Vi~~~~p-~s~~~~~Qr~GRagR~g~~g~~-------~~~~~~~~~~ 368 (457)
|+++++|+|+|++++||+++.| .|..+|+||+||++|.+..|.+ +.+++.+..+
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 9999999999999999999987 5999999999999998766554 6777776544
No 70
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.6e-34 Score=298.38 Aligned_cols=295 Identities=18% Similarity=0.234 Sum_probs=205.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH-cCCce----eEecCCCcHH
Q 012728 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAG----EFLSSTQTMQ 115 (457)
Q Consensus 44 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~-~~~~~----~~~~~~~~~~ 115 (457)
.+.+.++.++++++++||||||||.+|.+++++. .++++|+.|+|++|.|.++++.. ++... ........
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~-- 88 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES-- 88 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc--
Confidence 3455666678899999999999999999888865 46899999999999999998864 33322 11111100
Q ss_pred HHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEEEeccccc-cccCCCCHHHHHHHHHHHHhC-C
Q 012728 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-P 192 (457)
Q Consensus 116 ~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lViDEah~~-~~~~~~~~~~~~~l~~~~~~~-~ 192 (457)
......++.+ +|+|.+..+ .+...+..+++|||||+|.. .+.. +. +..+..+...+ +
T Consensus 89 ----------~~~~~t~I~v------~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~D--l~--L~ll~~i~~~lr~ 148 (812)
T PRK11664 89 ----------KVGPNTRLEV------VTEGILTRMIQRDPELSGVGLVILDEFHERSLQAD--LA--LALLLDVQQGLRD 148 (812)
T ss_pred ----------ccCCCCcEEE------EChhHHHHHHhhCCCcCcCcEEEEcCCCccccccc--hH--HHHHHHHHHhCCc
Confidence 0011234544 455554443 33456778999999999973 2211 11 12223344433 4
Q ss_pred CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHH-----HHHHHHHHhcCCccEEEEeCC
Q 012728 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLE 267 (457)
Q Consensus 193 ~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~iIf~~s 267 (457)
+.++++||||++.... ..++. ..+.+....... .+...+..... ..++ ..+...+.. ..+.+|||+++
T Consensus 149 ~lqlilmSATl~~~~l---~~~~~-~~~~I~~~gr~~-pV~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg 221 (812)
T PRK11664 149 DLKLLIMSATLDNDRL---QQLLP-DAPVIVSEGRSF-PVERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPG 221 (812)
T ss_pred cceEEEEecCCCHHHH---HHhcC-CCCEEEecCccc-cceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCC
Confidence 7899999999987643 33332 223332222111 12222221111 1222 234444443 35779999999
Q ss_pred cccHHHHHHHHHh---CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC-------
Q 012728 268 RTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------- 337 (457)
Q Consensus 268 ~~~~~~l~~~L~~---~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~------- 337 (457)
..+++.+++.|++ .++.+..+||+++.++|..+++.|.+|+.+|||||+++++|||||+|++||+++.++
T Consensus 222 ~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~ 301 (812)
T PRK11664 222 VGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPK 301 (812)
T ss_pred HHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCccccccccc
Confidence 9999999999987 578899999999999999999999999999999999999999999999999988765
Q ss_pred -----------CHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 012728 338 -----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (457)
Q Consensus 338 -----------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~ 368 (457)
|..+|.||.|||||. ++|.|+.+++..+..
T Consensus 302 ~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 302 TGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred CCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 346899999999999 699999999977654
No 71
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-33 Score=297.45 Aligned_cols=315 Identities=20% Similarity=0.267 Sum_probs=219.1
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHHc-CC---ceeE
Q 012728 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEF 107 (457)
Q Consensus 36 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~-~~---~~~~ 107 (457)
.-++|+||.+++..++++ |+++++|||+|||+++++++.. .++++||++|+++|+.|+.+.++.+ +. ....
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 446899999999988887 8999999999999988776653 3789999999999999999999874 43 4444
Q ss_pred ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 012728 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~ 187 (457)
+.+......+...+. +.+++++||+++... .+........+++||+||||++.... .+. ..+..+
T Consensus 92 ~~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~----l~~~~~~~~~~~liVvDEaH~~~~~~-~~~---~i~~~~ 156 (773)
T PRK13766 92 FTGEVSPEKRAELWE-------KAKVIVATPQVIEND----LIAGRISLEDVSLLIFDEAHRAVGNY-AYV---YIAERY 156 (773)
T ss_pred EeCCCCHHHHHHHHh-------CCCEEEECHHHHHHH----HHcCCCChhhCcEEEEECCccccccc-cHH---HHHHHH
Confidence 555554444333332 256777777655321 12233445568999999999986421 111 122233
Q ss_pred HHhCCCccEEEEeccCChhH--HHHHHHHcCCCCCeEEe-------cCCCCCceEEE-----------------------
Q 012728 188 RNYLPDVPILALTATAAPKV--QKDVMESLCLQNPLVLK-------SSFNRPNLFYE----------------------- 235 (457)
Q Consensus 188 ~~~~~~~~~v~lSAT~~~~~--~~~~~~~~~~~~~~~~~-------~~~~~~~i~~~----------------------- 235 (457)
....+...+++|||||.... ...+...+++....+.. .....+.+...
T Consensus 157 ~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l 236 (773)
T PRK13766 157 HEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRL 236 (773)
T ss_pred HhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHH
Confidence 34444567999999985332 22233333221100000 00000000000
Q ss_pred -------------------------------E------------------------------------------------
Q 012728 236 -------------------------------V------------------------------------------------ 236 (457)
Q Consensus 236 -------------------------------~------------------------------------------------ 236 (457)
.
T Consensus 237 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~ 316 (773)
T PRK13766 237 KKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARS 316 (773)
T ss_pred HHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccc
Confidence 0
Q ss_pred -----------------------EEeCchhhHHHHHHHHHHh----cCCccEEEEeCCcccHHHHHHHHHhCCCceEeec
Q 012728 237 -----------------------RYKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYH 289 (457)
Q Consensus 237 -----------------------~~~~~~~~~~~~l~~~l~~----~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~ 289 (457)
........|+..|.++++. .++.++||||+++.+++.+++.|...|+.+..+|
T Consensus 317 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~ 396 (773)
T PRK13766 317 SGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFV 396 (773)
T ss_pred cCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEE
Confidence 0000001244445555543 5678999999999999999999999999999998
Q ss_pred CC--------CCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE
Q 012728 290 AG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 290 ~~--------~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~ 361 (457)
|. +++.+|..++++|++|+.++||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. |.++++
T Consensus 397 g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l 475 (773)
T PRK13766 397 GQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVL 475 (773)
T ss_pred ccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEE
Confidence 86 899999999999999999999999999999999999999999999999999999999999864 778877
Q ss_pred eccchH
Q 012728 362 YGMDDR 367 (457)
Q Consensus 362 ~~~~~~ 367 (457)
+..+..
T Consensus 476 ~~~~t~ 481 (773)
T PRK13766 476 IAKGTR 481 (773)
T ss_pred EeCCCh
Confidence 776543
No 72
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.5e-34 Score=283.44 Aligned_cols=340 Identities=20% Similarity=0.232 Sum_probs=248.7
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC-------------CCeEEEEcchHHHHHHHHH
Q 012728 31 RWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-------------PGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 31 ~~~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~-------------~~~~lvl~P~~~L~~q~~~ 96 (457)
+..|+|..++.+|.+++|.+.+. .|+|++||||+|||-.|++.++.. ..++++|+|+++||.+.++
T Consensus 103 k~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~ 182 (1230)
T KOG0952|consen 103 KGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVD 182 (1230)
T ss_pred hhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHH
Confidence 35689999999999999999865 699999999999999999888742 5689999999999999998
Q ss_pred HHHH----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCc--ccCchhHHHHHhhhhcCCccEEEEeccccc
Q 012728 97 GLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL--TATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (457)
Q Consensus 97 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~--i~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (457)
.|.+ +|+.+..+.+........ +. +.+++++|||. +.|.....+ ......+++|||||+|.+
T Consensus 183 ~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 183 KFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSVGD---SALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeeccc---hhhhhheeeEEeeeehhh
Confidence 8776 578888888777654443 11 27888988884 334332211 122334899999999999
Q ss_pred cc-cCCCCHHHHHHHHHHHHh-CCCccEEEEeccCChhHHHHHHHHcCCCCC--eEEecCCCCCc-eEEEEEEeCc----
Q 012728 171 SS-WGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPN-LFYEVRYKDL---- 241 (457)
Q Consensus 171 ~~-~~~~~~~~~~~l~~~~~~-~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-i~~~~~~~~~---- 241 (457)
-+ +|.-.+....++.+.... ....++|++|||+|+- .++..++..+.+ ........||- +...+.-...
T Consensus 251 hd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~ 328 (1230)
T KOG0952|consen 251 HDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNR 328 (1230)
T ss_pred cCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEEeeecccch
Confidence 54 565455555555444433 3478999999999987 577899988632 23333333332 2111111110
Q ss_pred ------hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC-----------------------CceEeecCCC
Q 012728 242 ------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-----------------------ISCAAYHAGL 292 (457)
Q Consensus 242 ------~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g-----------------------~~~~~~~~~~ 292 (457)
.+-.++.+.++++ .+.+++|||.++..+.+.|+.|.+.+ ....++|+||
T Consensus 329 ~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm 406 (1230)
T KOG0952|consen 329 QQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGM 406 (1230)
T ss_pred hhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccccc
Confidence 1123334444444 36789999999999999998886531 2457899999
Q ss_pred CHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE----EecCCC------CHHHHHHHhcccCCCC--CCceEEE
Q 012728 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNIPK------SMEAFYQESGRAGRDQ--LPSKSLL 360 (457)
Q Consensus 293 ~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi----~~~~p~------s~~~~~Qr~GRagR~g--~~g~~~~ 360 (457)
...+|..+.+.|..|.++||+||..+++|+|+|+--++| .||.-. ++-+.+|..|||||.+ ..|.+++
T Consensus 407 ~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giI 486 (1230)
T KOG0952|consen 407 LRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGII 486 (1230)
T ss_pred chhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEE
Confidence 999999999999999999999999999999999766665 233322 5778899999999964 6789999
Q ss_pred EeccchHHHHHHHHHhcccCCCCccc
Q 012728 361 YYGMDDRRRMEFILSKNQSKNSQSFS 386 (457)
Q Consensus 361 ~~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (457)
+.+.+....+..++....+.+++..+
T Consensus 487 iTt~dkl~~Y~sLl~~~~piES~~~~ 512 (1230)
T KOG0952|consen 487 ITTRDKLDHYESLLTGQNPIESQLLP 512 (1230)
T ss_pred EecccHHHHHHHHHcCCChhHHHHHH
Confidence 99999999999998887766555433
No 73
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1e-32 Score=280.64 Aligned_cols=323 Identities=21% Similarity=0.207 Sum_probs=231.2
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH---
Q 012728 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (457)
Q Consensus 27 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~--- 100 (457)
.++....+|. .|+++|..+...+..|+ ++.+.||+|||+++.+|++. .+..+.|++||+.||.|.++.+..
T Consensus 68 rea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 68 REAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred HHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 3444445677 48999999988888776 99999999999999999874 488999999999999998888766
Q ss_pred -cCCceeEecCCCc-HHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccc-cC
Q 012728 101 -KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-WG 174 (457)
Q Consensus 101 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~-~~ 174 (457)
+|+.+..+.++.. ...+...+ .++|+++||.-++-.-....+ ........+.++|+||||.++= ..
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea 216 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEA 216 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccC
Confidence 5788887777665 33333221 267888887655321111111 1112345689999999999852 00
Q ss_pred --------C--CCHHHHHHHHHHHHhC-----------------------------------------------------
Q 012728 175 --------H--DFRPSYRKLSSLRNYL----------------------------------------------------- 191 (457)
Q Consensus 175 --------~--~~~~~~~~l~~~~~~~----------------------------------------------------- 191 (457)
. .-...|.....+...+
T Consensus 217 ~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~ 296 (790)
T PRK09200 217 QTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAH 296 (790)
T ss_pred CCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHH
Confidence 0 0000011110000000
Q ss_pred ---------------------------CCc--------------------------------------cEEEEeccCChh
Q 012728 192 ---------------------------PDV--------------------------------------PILALTATAAPK 206 (457)
Q Consensus 192 ---------------------------~~~--------------------------------------~~v~lSAT~~~~ 206 (457)
++. ++.+||+|....
T Consensus 297 ~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~ 376 (790)
T PRK09200 297 VLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTE 376 (790)
T ss_pred HHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHH
Confidence 000 256777886543
Q ss_pred HHHHHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCC
Q 012728 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (457)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g 282 (457)
. .++....++ .++..+.++|....... ......+|...+.+.+.. ..+.++||||+|++.++.++..|.+.|
T Consensus 377 ~-~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~g 452 (790)
T PRK09200 377 E-KEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAG 452 (790)
T ss_pred H-HHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 3 444444433 34455666666543221 122335788888888765 367789999999999999999999999
Q ss_pred CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCC---CCcc-----EEEEecCCCCHHHHHHHhcccCCCCC
Q 012728 283 ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQL 354 (457)
Q Consensus 283 ~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi---p~v~-----~Vi~~~~p~s~~~~~Qr~GRagR~g~ 354 (457)
+++..+||++.++++..+...++.| +|+|||++++||+|+ |+|. +||+|+.|.|...|.||+||+||.|.
T Consensus 453 i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 453 IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGD 530 (790)
T ss_pred CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCC
Confidence 9999999999998888887777766 699999999999999 6998 99999999999999999999999999
Q ss_pred CceEEEEeccch
Q 012728 355 PSKSLLYYGMDD 366 (457)
Q Consensus 355 ~g~~~~~~~~~~ 366 (457)
+|.+++|++.+|
T Consensus 531 ~G~s~~~is~eD 542 (790)
T PRK09200 531 PGSSQFFISLED 542 (790)
T ss_pred CeeEEEEEcchH
Confidence 999999998755
No 74
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.1e-32 Score=277.70 Aligned_cols=319 Identities=16% Similarity=0.141 Sum_probs=221.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH----cCCceeEecC
Q 012728 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSS 110 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~----~~~~~~~~~~ 110 (457)
.++|+|.+++..+.-++..++.++||+|||++|.+|++.. +..++|++|+++||.|+.+.+.. +|+.+.....
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~ 147 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVV 147 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEEC
Confidence 4677777777777666667999999999999999998643 67799999999999999998854 6777665443
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcCCccEEEEeccccccccC---------C--C
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCISSWG---------H--D 176 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~~l~~lViDEah~~~~~~---------~--~ 176 (457)
............... -..+|+++||..+.-.-....+.. ...+..+.++|+||||.++-.. . .
T Consensus 148 ~s~~~~~~~~~rr~~---y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~ 224 (762)
T TIGR03714 148 DDPDEEYDANEKRKI---YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRV 224 (762)
T ss_pred CCCccccCHHHHHHh---CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCcc
Confidence 311110000001111 127888888887644333222211 2234568999999999995311 0 0
Q ss_pred CHHHHHHHHHHHHhC-----------------------------------------------------------------
Q 012728 177 FRPSYRKLSSLRNYL----------------------------------------------------------------- 191 (457)
Q Consensus 177 ~~~~~~~l~~~~~~~----------------------------------------------------------------- 191 (457)
-...|.....+...+
T Consensus 225 ~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~ 304 (762)
T TIGR03714 225 QSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVT 304 (762)
T ss_pred chHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 000111110000000
Q ss_pred ---------------CC--------------------------------------ccEEEEeccCChhHHHHHHHHcCCC
Q 012728 192 ---------------PD--------------------------------------VPILALTATAAPKVQKDVMESLCLQ 218 (457)
Q Consensus 192 ---------------~~--------------------------------------~~~v~lSAT~~~~~~~~~~~~~~~~ 218 (457)
++ .++.+||+|.... ..++....+
T Consensus 305 ~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~-~~Ef~~iY~-- 381 (762)
T TIGR03714 305 NGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVA-EKEFIETYS-- 381 (762)
T ss_pred CCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhH-HHHHHHHhC--
Confidence 00 0256788886443 344544443
Q ss_pred CCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCH
Q 012728 219 NPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLND 294 (457)
Q Consensus 219 ~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~ 294 (457)
-.++..+.++|.+..... ......+|...+.+.++. ..+.++||||+|++.++.++..|.+.|+++..+||++.+
T Consensus 382 -l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~ 460 (762)
T TIGR03714 382 -LSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAA 460 (762)
T ss_pred -CCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChH
Confidence 335566677776654321 222335678888887765 467789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEEeccccccCCCC---------CccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 295 KARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 295 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip---------~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
+++..+.+.++.| .|+|||++++||+||| ++.+|+++++|....+ .||+||+||.|.+|.+++|++.+
T Consensus 461 ~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 461 KEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred HHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 9988887777666 6999999999999999 9999999999988766 99999999999999999999876
Q ss_pred h
Q 012728 366 D 366 (457)
Q Consensus 366 ~ 366 (457)
|
T Consensus 538 D 538 (762)
T TIGR03714 538 D 538 (762)
T ss_pred h
Confidence 5
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=3.6e-32 Score=264.88 Aligned_cols=325 Identities=20% Similarity=0.255 Sum_probs=261.9
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC------CCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcch
Q 012728 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPL 87 (457)
Q Consensus 17 ~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~ 87 (457)
..+++...++.+.+....+|. ||..|++++..+... -+-++++.-|||||++++++++ ..+..+...+||
T Consensus 242 ~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPT 320 (677)
T COG1200 242 GIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPT 320 (677)
T ss_pred CCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccH
Confidence 344566666777776778998 999999999999853 3679999999999999887665 458899999999
Q ss_pred HHHHHHHHHHHHH----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEE
Q 012728 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (457)
Q Consensus 88 ~~L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lV 163 (457)
--||.|.++.+.+ +|+.+..+.+......+......+.++. .+++++|+.++ .+...++++.++|
T Consensus 321 EILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALi---------Qd~V~F~~LgLVI 389 (677)
T COG1200 321 EILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALI---------QDKVEFHNLGLVI 389 (677)
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhh---------hcceeecceeEEE
Confidence 9999999988776 6888899999999999998888888887 77877777654 3445567799999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcC-CCCCeEEecCCCCCceEEEEEEeCc
Q 012728 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLC-LQNPLVLKSSFNRPNLFYEVRYKDL 241 (457)
Q Consensus 164 iDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 241 (457)
+||=|++.- .+-..++..-. ...++.|||||-|.... ...++ ++-..+-..+..|..|.-.......
T Consensus 390 iDEQHRFGV---------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~~~ 458 (677)
T COG1200 390 IDEQHRFGV---------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPHER 458 (677)
T ss_pred EeccccccH---------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecccc
Confidence 999999642 44455666666 57899999999998765 44444 3334444456777778777777665
Q ss_pred hhhHHHHHHHHHHhcCCccEEEEeCCccc--------HHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceE
Q 012728 242 LDDAYADLCSVLKANGDTCAIVYCLERTT--------CDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (457)
Q Consensus 242 ~~~~~~~l~~~l~~~~~~~~iIf~~s~~~--------~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~v 311 (457)
..+.++.+.+.+. .+.++.+.|+-.++ +..+++.|+.. ++.+..+||.|+..++.+++++|++|+++|
T Consensus 459 ~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~I 536 (677)
T COG1200 459 RPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDI 536 (677)
T ss_pred HHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcE
Confidence 5666666666655 56789999987765 45566777643 567999999999999999999999999999
Q ss_pred EEEeccccccCCCCCccEEEEecCC-CCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 312 VVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 312 LvaT~~~~~Gldip~v~~Vi~~~~p-~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
||||.+++.|||+|+.++.|..+.- ...++..|-.||+||.+..++|++++.+..
T Consensus 537 LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 537 LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999998853 368899999999999999999999998765
No 76
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=2.4e-32 Score=292.80 Aligned_cols=293 Identities=19% Similarity=0.255 Sum_probs=197.3
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh----cCCCeEEEEcchHHHHHHHHHHHH
Q 012728 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
.++.+.+++..|+ +|+++|..+++.++.|+|++++||||+|||. |.+++. ..+++++|++||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3344555554455 5999999999999999999999999999997 444432 247899999999999999999988
Q ss_pred HcC----Ccee---EecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 100 EKG----IAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 100 ~~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
.+. +... .++++............+..+. .++++ +||+++......... .++++|+||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV------~Tp~rL~~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILI------TTTMFLSKNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEE------ECHHHHHHHHHHhcC-CCCEEEEeChHhhhh
Confidence 753 2222 2445555554444444444443 45554 455555544333222 699999999999988
Q ss_pred cCC---------CCHHH-HHHH-------------------HHHHHhCC-Ccc--EEEEeccC-ChhHHHHHHHHcCCCC
Q 012728 173 WGH---------DFRPS-YRKL-------------------SSLRNYLP-DVP--ILALTATA-APKVQKDVMESLCLQN 219 (457)
Q Consensus 173 ~~~---------~~~~~-~~~l-------------------~~~~~~~~-~~~--~v~lSAT~-~~~~~~~~~~~~~~~~ 219 (457)
++. .|.+. +..+ ..+....| +.| ++++|||. +......+...+ ..
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~l--l~ 291 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFREL--LG 291 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccc--cc
Confidence 431 14432 2221 11222333 333 56789995 444332222111 11
Q ss_pred CeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCc---ccHHHHHHHHHhCCCceEeecCCCCHHH
Q 012728 220 PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLNDKA 296 (457)
Q Consensus 220 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~---~~~~~l~~~L~~~g~~~~~~~~~~~~~~ 296 (457)
..+-.......++...+.... .+...+.++++... .++||||+++ +.++.+++.|++.|+++..+||++++
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred eEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 111111222344444433322 12345666666543 5689999999 99999999999999999999999973
Q ss_pred HHHHHHHHhcCCceEEEE----eccccccCCCCC-ccEEEEecCCC
Q 012728 297 RSSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK 337 (457)
Q Consensus 297 r~~~~~~f~~g~~~vLva----T~~~~~Gldip~-v~~Vi~~~~p~ 337 (457)
.++++|++|+++|||| |++++||||+|+ +++||+||+|.
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 6799999999999999 499999999999 89999999996
No 77
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=4.3e-32 Score=282.67 Aligned_cols=315 Identities=17% Similarity=0.173 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhh---c--CCCeEEEEcchHHHHHHHHHHHH-HcCCceeEec
Q 012728 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---A--KPGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l---~--~~~~~lvl~P~~~L~~q~~~~~~-~~~~~~~~~~ 109 (457)
.|.|+|..++..++.. ..+++...+|.|||.-+.+.+. . ...++|||||. .|..||..++. +++.....+.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5899999998777654 4688999999999977654432 1 24689999997 89999999985 4777666655
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccC-chhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012728 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t-~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
........ ......-...++++++.+.+.. +.....+. ...+++||+||||++......-...|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~----~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQAL----AAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHh----hcCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44321110 0000111135677777666554 22222222 235999999999998631111123355565554
Q ss_pred HhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE---------------------------------------------
Q 012728 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL--------------------------------------------- 223 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 223 (457)
... ..++++||||......+++..+.+-+|..+
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 432 358999999864222222222221111110
Q ss_pred -------------------------------------ec------CC-CCCceEEEEEE---------------------
Q 012728 224 -------------------------------------KS------SF-NRPNLFYEVRY--------------------- 238 (457)
Q Consensus 224 -------------------------------------~~------~~-~~~~i~~~~~~--------------------- 238 (457)
+. .+ .+....+.+..
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 00 00 00000000000
Q ss_pred -------------eCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHH-hCCCceEeecCCCCHHHHHHHHHHH
Q 012728 239 -------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (457)
Q Consensus 239 -------------~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~r~~~~~~f 304 (457)
....+.|+..|.++++...+.++||||+++..+..+++.|+ ..|+.+..+||+|++.+|..+++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 00012355567777777778899999999999999999994 5699999999999999999999999
Q ss_pred hcC--CceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEec
Q 012728 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 305 ~~g--~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
+++ ..+|||||+++++|+|++.+++||+||+|+|+..|.||+||++|.|+.+.+.+++.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 974 69999999999999999999999999999999999999999999999987765543
No 78
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-34 Score=245.39 Aligned_cols=298 Identities=17% Similarity=0.252 Sum_probs=215.4
Q ss_pred cccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcch
Q 012728 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (457)
Q Consensus 14 ~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~ 87 (457)
+..|.++-|.+++.+++-+ .||++|+..|.++||...-|-|++++|..|.|||.+|.++.++. .-.++|+|.|
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 3468889999999999998 69999999999999999999999999999999999999998875 2358999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH--HhhhhcCCcc
Q 012728 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLN 160 (457)
Q Consensus 88 ~~L~~q~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l--~~~~~~~~l~ 160 (457)
|+||-|..++..++ +.+...+.++............ +.+.+++|||++..+ .+..++++++
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~------------~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN------------CPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC------------CCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 99999988877663 3444555554433222221111 223378899998888 4456677899
Q ss_pred EEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEe--cCC--CCCceEEE
Q 012728 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK--SSF--NRPNLFYE 235 (457)
Q Consensus 161 ~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~~~ 235 (457)
.+|+|||+.++++- +.| ..+.++.+..| ..|++.+|||++.+...--.+. +.+|..+. .+. ....+...
T Consensus 188 hFvlDEcdkmle~l-DMr---RDvQEifr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 188 HFVLDECDKMLEQL-DMR---RDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred eeehhhHHHHHHHH-HHH---HHHHHHhhcCcccceeeeeeeecchhhHHHHHhh--hcCchhhhccchhhhhhhhHHHH
Confidence 99999999998743 233 45566666666 6889999999999876533333 23443221 111 11111100
Q ss_pred EEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012728 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
+. +-...+|-..+.+++....-.+++||+.+... | + | +.+ +|||
T Consensus 262 Yv-kLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~vat 305 (387)
T KOG0329|consen 262 YV-KLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVAT 305 (387)
T ss_pred HH-hhhhhhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHHh
Confidence 00 11112344445555555445679999987653 1 0 2 123 8999
Q ss_pred ccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
+.+++|+|+..++.+++||+|.+..+|+||+|||||.|..|.+++|++..+
T Consensus 306 ~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 306 DLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 999999999999999999999999999999999999999999999988664
No 79
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.3e-31 Score=266.56 Aligned_cols=322 Identities=20% Similarity=0.199 Sum_probs=228.0
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----
Q 012728 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (457)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~---- 100 (457)
.+....+|.. |++.|..+...+.+|+ ++.++||+|||+++.+|++. .+..+.|++||+.||.|.++.+..
T Consensus 47 Ea~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 47 EASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred HHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 3444456765 7888888888777776 99999999999999999852 267899999999999999988776
Q ss_pred cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccc-----
Q 012728 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS----- 172 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~----- 172 (457)
+|+.+..+.++.....+...+ ..+++++||.-++-.-....+ .....++.+.++||||+|.++-
T Consensus 124 LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRt 195 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEART 195 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhh
Confidence 577777777766654333222 157777777644221111111 1223456689999999999853
Q ss_pred ----cCC--CCHHHHH--------------------------------HHHHHH---------------------Hh---
Q 012728 173 ----WGH--DFRPSYR--------------------------------KLSSLR---------------------NY--- 190 (457)
Q Consensus 173 ----~~~--~~~~~~~--------------------------------~l~~~~---------------------~~--- 190 (457)
-|. .-...|. .+..+. ..
T Consensus 196 pLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l 275 (745)
T TIGR00963 196 PLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKEL 275 (745)
T ss_pred HHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHH
Confidence 010 0000010 011100 00
Q ss_pred C------------------------CC--------------------------------------ccEEEEeccCChhHH
Q 012728 191 L------------------------PD--------------------------------------VPILALTATAAPKVQ 208 (457)
Q Consensus 191 ~------------------------~~--------------------------------------~~~v~lSAT~~~~~~ 208 (457)
+ ++ .++.+||+|...+ .
T Consensus 276 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te-~ 354 (745)
T TIGR00963 276 FEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE-E 354 (745)
T ss_pred HhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH-H
Confidence 0 00 0255777777543 2
Q ss_pred HHHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCc
Q 012728 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (457)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (457)
.++....++. ++..+.++|....... ......+|+..+.+.+.. ..+.++||||+|++.++.++..|.+.|++
T Consensus 355 ~E~~~iY~l~---vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~ 431 (745)
T TIGR00963 355 EEFEKIYNLE---VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIP 431 (745)
T ss_pred HHHHHHhCCC---EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCC
Confidence 3444444433 4555666665543321 122234677777666633 46788999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC-------ccEEEEecCCCCHHHHHHHhcccCCCCCCce
Q 012728 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (457)
Q Consensus 285 ~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~-------v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~ 357 (457)
...+|++ +.+|+..+..|+.+...|+|||++++||+||+. ..+||+++.|.|...|.|+.||+||.|.+|.
T Consensus 432 ~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~ 509 (745)
T TIGR00963 432 HNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGS 509 (745)
T ss_pred eEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcc
Confidence 9999998 778999999999999999999999999999998 4599999999999999999999999999999
Q ss_pred EEEEeccch
Q 012728 358 SLLYYGMDD 366 (457)
Q Consensus 358 ~~~~~~~~~ 366 (457)
+..|++.+|
T Consensus 510 s~~~ls~eD 518 (745)
T TIGR00963 510 SRFFLSLED 518 (745)
T ss_pred eEEEEeccH
Confidence 999988775
No 80
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=2.3e-31 Score=273.82 Aligned_cols=311 Identities=19% Similarity=0.211 Sum_probs=222.9
Q ss_pred CCCHHHHHHHHHHHcC---CCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cCCceeEecC
Q 012728 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~ 110 (457)
.+++.|+++++.+.++ +++++.++||+|||.+|+.++ +..++.++|++|+++|+.|+.+++++ ++.....+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999874 789999999999999997654 44588999999999999999999987 6788888888
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHH--HHHHHHH
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~--~~l~~~~ 188 (457)
......+...+..+..+. .+++++|+..+. ..+.++++||+||+|...-++.+ .+.| ..+...+
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~-----------~p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALF-----------LPFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhc-----------ccccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 888777777777766655 678777765332 23556899999999987543321 2222 3455556
Q ss_pred HhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC---CCCceEEEEEEe--------CchhhHHHHHHHHHHhcC
Q 012728 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYK--------DLLDDAYADLCSVLKANG 257 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~--------~~~~~~~~~l~~~l~~~~ 257 (457)
....+.+++++|||++.+....+.. +........... ..|.+....... ......++.+.+.++ .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 6667899999999998776654321 111111111111 122222211100 011122233333332 4
Q ss_pred CccEEEEeCCc------------------------------------------------------------ccHHHHHHH
Q 012728 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (457)
Q Consensus 258 ~~~~iIf~~s~------------------------------------------------------------~~~~~l~~~ 277 (457)
++++|||+|++ ..++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 55789988752 246788888
Q ss_pred HHhC--CCceEeecCCCC--HHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCC--C----------CHHH
Q 012728 278 LSAG--GISCAAYHAGLN--DKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--K----------SMEA 341 (457)
Q Consensus 278 L~~~--g~~~~~~~~~~~--~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p--~----------s~~~ 341 (457)
|++. +.++..+|+++. .+++..+++.|++|+.+|||+|+++++|+|+|++++|+.+|.. . ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 8886 788999999986 4678999999999999999999999999999999999766543 2 2367
Q ss_pred HHHHhcccCCCCCCceEEEEeccch
Q 012728 342 FYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 342 ~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
|.|++||+||.+..|.+++.....+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~ 550 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPE 550 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCC
Confidence 9999999999999999987655433
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=7.4e-32 Score=264.85 Aligned_cols=294 Identities=20% Similarity=0.259 Sum_probs=204.6
Q ss_pred CCCCHHHHHHHHHHHc----CCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCce---eEec
Q 012728 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG---EFLS 109 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~---~~~~ 109 (457)
..+|+||++++.++.+ ++..++++|||+|||.+++..+-.....++||+|+.+|+.||.+.+....... ..+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 3599999999999998 88999999999999999887777667779999999999999988777743322 1111
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 012728 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~ 189 (457)
+... ...+ ..+.++|...+.... .......+.+++||+||||++.... +.. +..
T Consensus 115 ~~~~------------~~~~-~~i~vat~qtl~~~~----~l~~~~~~~~~liI~DE~Hh~~a~~------~~~---~~~ 168 (442)
T COG1061 115 GGEK------------ELEP-AKVTVATVQTLARRQ----LLDEFLGNEFGLIIFDEVHHLPAPS------YRR---ILE 168 (442)
T ss_pred Ccee------------ccCC-CcEEEEEhHHHhhhh----hhhhhcccccCEEEEEccccCCcHH------HHH---HHH
Confidence 1110 0000 235555555444432 2222233358999999999987633 233 333
Q ss_pred hCCCcc-EEEEeccCChhHHHHHHHHcCCCCCeEEecC--------CCCCceEEEEEEeCch------------------
Q 012728 190 YLPDVP-ILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKDLL------------------ 242 (457)
Q Consensus 190 ~~~~~~-~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~------------------ 242 (457)
.+.... +++||||+................+.++... ...+..++.+......
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~ 248 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLR 248 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhh
Confidence 333444 9999999875442222222222234444322 1122222222211000
Q ss_pred ------------------hhHHHHHHHHHHhc-CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHH
Q 012728 243 ------------------DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (457)
Q Consensus 243 ------------------~~~~~~l~~~l~~~-~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~ 303 (457)
..+...+..++... .+.+++||+.+..++..++..+...|. +..+.+..+..+|..+++.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~ 327 (442)
T COG1061 249 ARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILER 327 (442)
T ss_pred hhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHH
Confidence 11222233333333 367899999999999999999998887 8899999999999999999
Q ss_pred HhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCC-CCCCce
Q 012728 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (457)
Q Consensus 304 f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR-~g~~g~ 357 (457)
|+.|.+++||++.++.+|+|+|+++++|......|...|+||+||.-| ...++.
T Consensus 328 fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 328 FRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 999999999999999999999999999999999999999999999999 333443
No 82
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=9.9e-31 Score=268.45 Aligned_cols=328 Identities=20% Similarity=0.199 Sum_probs=266.9
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc----C--CCEEEEcCCCchhhHHHHHhh---hcCCCeEE
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----G--RDCFCLMPTGGGKSMCYQIPA---LAKPGIVL 82 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~----~--~~~lv~a~TGsGKT~~~~l~~---l~~~~~~l 82 (457)
.+...-..++.+.+....+...|+|. -||-|..||..+.+ + -|-++|+.-|.|||-+++-++ ...++.|.
T Consensus 569 R~~~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVA 647 (1139)
T COG1197 569 RQAKKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVA 647 (1139)
T ss_pred HhhccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEE
Confidence 34445566778889999999999998 79999999999874 3 389999999999998887554 45689999
Q ss_pred EEcchHHHHHHHHHHHHH----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCC
Q 012728 83 VVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (457)
Q Consensus 83 vl~P~~~L~~q~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~ 158 (457)
|++||.-||+|.++.|+. ++++...+....+......+...+..+. ++|+++|+-++.+ ...+++
T Consensus 648 vLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~k---------dv~Fkd 716 (1139)
T COG1197 648 VLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSK---------DVKFKD 716 (1139)
T ss_pred EEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCC---------CcEEec
Confidence 999999999999988776 6788888888888888888999999887 8888888876644 344566
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEec-CCCCCceEEEEE
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVR 237 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 237 (457)
+.++||||-|++.= ..-+.++....++.++-|||||-|.... +...++++-.++.. +.+|-.+.-.+.
T Consensus 717 LGLlIIDEEqRFGV---------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~ 785 (1139)
T COG1197 717 LGLLIIDEEQRFGV---------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVS 785 (1139)
T ss_pred CCeEEEechhhcCc---------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEe
Confidence 99999999999642 2223344444589999999999999888 77778888766654 456666666666
Q ss_pred EeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEe
Q 012728 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (457)
Q Consensus 238 ~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT 315 (457)
..+.. -.-+.+.+.+. .++++....|.++..+.+++.|++. ...+.+.||.|+..+-+.++..|.+|+++|||||
T Consensus 786 ~~d~~-~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~T 862 (1139)
T COG1197 786 EYDDL-LIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCT 862 (1139)
T ss_pred cCChH-HHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEe
Confidence 55432 12223333332 4678888899999999999999987 5678999999999999999999999999999999
Q ss_pred ccccccCCCCCccEEEEecCCC-CHHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 316 ~~~~~Gldip~v~~Vi~~~~p~-s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
.+++.|||||+++.+|.-+... ..++..|..||+||.++.++|++++.+.
T Consensus 863 TIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 863 TIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred eeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999766543 6899999999999999999999998754
No 83
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=8e-31 Score=260.53 Aligned_cols=286 Identities=20% Similarity=0.237 Sum_probs=204.0
Q ss_pred EEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cCCceeEecCCCcHHHHHHHHHHhhcCCCccc
Q 012728 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (457)
Q Consensus 57 lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (457)
++.||||+|||.+|+..+ +..++.++|++|+++|+.|+++++++ ++.....+++......+...|..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 478999999999986443 45688999999999999999999987 6778888888888877777777776654 67
Q ss_pred EEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhCCCccEEEEeccCChhHHHH
Q 012728 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (457)
Q Consensus 133 i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~--~~l~~~~~~~~~~~~v~lSAT~~~~~~~~ 210 (457)
++++|+..+.. .+.++++|||||+|...-++.+. +.| ..+..++....+.+++++||||+.+....
T Consensus 79 IVVGTrsalf~-----------p~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFL-----------PFKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcC-----------cccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 77777654422 34568999999999987544322 222 34556667777999999999998776553
Q ss_pred HHHHcCCCCCeEEec-----CCCCCceEEEEEEeC-----chhhHHHHHHHHHHhcCCccEEEEeCCccc----------
Q 012728 211 VMESLCLQNPLVLKS-----SFNRPNLFYEVRYKD-----LLDDAYADLCSVLKANGDTCAIVYCLERTT---------- 270 (457)
Q Consensus 211 ~~~~~~~~~~~~~~~-----~~~~~~i~~~~~~~~-----~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~---------- 270 (457)
+.. + ....+.. ....+.+...-.... .....++.+.+.++ .++++|||+|++.-
T Consensus 147 ~~~--g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~--~g~qvLvflnrrGya~~~~C~~Cg 220 (505)
T TIGR00595 147 AKQ--K--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA--AGEQSILFLNRRGYSKNLLCRSCG 220 (505)
T ss_pred Hhc--C--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH--cCCcEEEEEeCCcCCCeeEhhhCc
Confidence 321 1 1111111 011222222111110 11122333333333 35679999876532
Q ss_pred --------------------------------------------------HHHHHHHHHhC--CCceEeecCCCCHHHH-
Q 012728 271 --------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR- 297 (457)
Q Consensus 271 --------------------------------------------------~~~l~~~L~~~--g~~~~~~~~~~~~~~r- 297 (457)
++++++.|++. +.++..+|++++...+
T Consensus 221 ~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~ 300 (505)
T TIGR00595 221 YILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGA 300 (505)
T ss_pred CccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccH
Confidence 58888999887 7889999999977655
Q ss_pred -HHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC------------CHHHHHHHhcccCCCCCCceEEEEe
Q 012728 298 -SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYY 362 (457)
Q Consensus 298 -~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~------------s~~~~~Qr~GRagR~g~~g~~~~~~ 362 (457)
..+++.|++|+.+|||+|+++++|+|+|++++|+..|... ....|.|++||+||.++.|.+++..
T Consensus 301 ~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 301 HEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred HHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 8899999999999999999999999999999986554321 2467899999999999999988654
No 84
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=1.3e-30 Score=263.96 Aligned_cols=335 Identities=21% Similarity=0.245 Sum_probs=236.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC--------------CCeEEEEcchHHHHHHHHHH
Q 012728 33 HFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~--------------~~~~lvl~P~~~L~~q~~~~ 97 (457)
++|..+++++|..+..+++.+ .+++++||||+|||-.+++.+++. ..++++++|.++|+++++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 468888999999999999877 589999999999999999988753 45899999999999999886
Q ss_pred HHH----cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh----hhcCCccEEEEecccc
Q 012728 98 LKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLLNLVAIDEAHC 169 (457)
Q Consensus 98 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~----~~~~~l~~lViDEah~ 169 (457)
+.+ +|+.+....+....+.... . ..+++++||| .+.-+.+. .....++++|+||.|.
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~qi-----e----eTqVIV~TPE------K~DiITRk~gdraY~qlvrLlIIDEIHL 448 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQI-----E----ETQVIVTTPE------KWDIITRKSGDRAYEQLVRLLIIDEIHL 448 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhhh-----h----cceeEEeccc------hhhhhhcccCchhHHHHHHHHhhhhhhh
Confidence 554 7888777776654332211 1 1455555555 44333222 1122378999999999
Q ss_pred cc-ccCCCCHHHHHHHHH-HHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE-ecCCCCC-ceEEEEEEeC--chh
Q 012728 170 IS-SWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRP-NLFYEVRYKD--LLD 243 (457)
Q Consensus 170 ~~-~~~~~~~~~~~~l~~-~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~i~~~~~~~~--~~~ 243 (457)
+. ++|.-.+....+... ......+.+++++|||+|+- .++..++..+.+-.+ ..+..|| .+.+.+.-.. ...
T Consensus 449 LhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 449 LHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred cccccchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 94 456433333222211 11222378899999999987 466777766654433 2233333 3333333221 111
Q ss_pred hHHHH-----HHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC-------------------------------------
Q 012728 244 DAYAD-----LCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------------- 281 (457)
Q Consensus 244 ~~~~~-----l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~------------------------------------- 281 (457)
..++. ..+.++..+.+++|||+.+++++.+.|+.++..
T Consensus 527 ~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLL 606 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLL 606 (1674)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHh
Confidence 22222 334455567789999999999988888777621
Q ss_pred CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE----EecC------CCCHHHHHHHhcccCC
Q 012728 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGRAGR 351 (457)
Q Consensus 282 g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi----~~~~------p~s~~~~~Qr~GRagR 351 (457)
.+.++++|+||+..+|..+.+.|++|.++|+|+|..+++|+|+|.-.++| .|++ +.++.+.+||.|||||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragr 686 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGR 686 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCC
Confidence 13678999999999999999999999999999999999999999877777 3553 3489999999999999
Q ss_pred CC--CCceEEEEeccchHHHHHHHHHhcccCCCCc
Q 012728 352 DQ--LPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384 (457)
Q Consensus 352 ~g--~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 384 (457)
.+ ..|.++++....+.+.+..+.+...+..++.
T Consensus 687 p~~D~~gegiiit~~se~qyyls~mn~qLpiesq~ 721 (1674)
T KOG0951|consen 687 PQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQF 721 (1674)
T ss_pred CccCcCCceeeccCchHhhhhHHhhhhcCCChHHH
Confidence 76 4577788888888888888777766555444
No 85
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.97 E-value=2.4e-30 Score=273.33 Aligned_cols=296 Identities=18% Similarity=0.205 Sum_probs=196.0
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh--cC----CCeEEEEcch----HHHHHHHHHHHHH-cCCceeEecC
Q 012728 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AK----PGIVLVVSPL----IALMENQVIGLKE-KGIAGEFLSS 110 (457)
Q Consensus 42 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l--~~----~~~~lvl~P~----~~L~~q~~~~~~~-~~~~~~~~~~ 110 (457)
.-.+.+..+.+++.++++|+||||||. ++|.+ .. .+.+++..|. ++||.++.+++.. +|..+.+...
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vr 155 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVR 155 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeec
Confidence 444566666677778889999999998 56632 21 2355556685 5777777777664 3332221100
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEEEecccc-ccccCCCCHHHHHHHHHHH
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lViDEah~-~~~~~~~~~~~~~~l~~~~ 188 (457)
..... ....+| +++|+|.+... .....+..+++|||||||. .++.+ |.. ..+..+.
T Consensus 156 ---------f~~~~---s~~t~I------~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~D--fLL--g~Lk~lL 213 (1294)
T PRK11131 156 ---------FNDQV---SDNTMV------KLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNID--FIL--GYLKELL 213 (1294)
T ss_pred ---------Ccccc---CCCCCE------EEEChHHHHHHHhcCCccccCcEEEecCccccccccc--hHH--HHHHHhh
Confidence 00000 112344 45556654443 3344577899999999994 56544 432 2345555
Q ss_pred HhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCc-----hhhHHHHHHHHH---HhcCCcc
Q 012728 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-----LDDAYADLCSVL---KANGDTC 260 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~l~~~l---~~~~~~~ 260 (457)
...|+.++|+||||++.+ .+.+.++ +.+.+.......+ +...+..... ..+.+..+...+ .....+.
T Consensus 214 ~~rpdlKvILmSATid~e---~fs~~F~-~apvI~V~Gr~~p-Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~Gd 288 (1294)
T PRK11131 214 PRRPDLKVIITSATIDPE---RFSRHFN-NAPIIEVSGRTYP-VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGD 288 (1294)
T ss_pred hcCCCceEEEeeCCCCHH---HHHHHcC-CCCEEEEcCcccc-ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCC
Confidence 555788999999999764 3444443 3444332221111 2222221111 122333333332 2345678
Q ss_pred EEEEeCCcccHHHHHHHHHhCCCc---eEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC--
Q 012728 261 AIVYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (457)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~-- 335 (457)
+|||+++..+++.+++.|++.+++ +..+||++++.+|..+++. .|..+|||||+++++|||+|+|++||++|.
T Consensus 289 ILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k 366 (1294)
T PRK11131 289 ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTAR 366 (1294)
T ss_pred EEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcc
Confidence 999999999999999999988764 6789999999999998876 578899999999999999999999999863
Q ss_pred -------------C---CCHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 012728 336 -------------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (457)
Q Consensus 336 -------------p---~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~ 369 (457)
| .|.++|.||.|||||. .+|.|+.+|+..+...
T Consensus 367 ~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 367 ISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred ccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 4668999999999999 6899999999876554
No 86
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.97 E-value=4.8e-31 Score=240.71 Aligned_cols=285 Identities=18% Similarity=0.187 Sum_probs=190.1
Q ss_pred CCeEEEEcchHHHHHHHHHHHHHcCCce--eEecCC-CcHHHH-HHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh
Q 012728 78 PGIVLVVSPLIALMENQVIGLKEKGIAG--EFLSST-QTMQVK-TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (457)
Q Consensus 78 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~-~~~~~~-~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~ 153 (457)
.+.++|+-|+++|++|..+.++.+.... ..+.+. ...... .... .++--+|++++.||+++.++.+.
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~---------~ql~~g~~ivvGtpgRl~~~is~ 356 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQC---------KQLKDGTHIVVGTPGRLLQPISK 356 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHH---------HHhhcCceeeecCchhhhhhhhc
Confidence 3468999999999999998766642211 000000 000011 1111 22233455578888888777543
Q ss_pred --hhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-------CccEEEEeccCChhHHHHHHHHc-CCCCCeEE
Q 012728 154 --HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVMESL-CLQNPLVL 223 (457)
Q Consensus 154 --~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~v~lSAT~~~~~~~~~~~~~-~~~~~~~~ 223 (457)
..+...+++|+||++.++..|.+ ..|.++..++| ..|.+.+|||+..-....+.+.+ ..+..+-+
T Consensus 357 g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdL 431 (725)
T KOG0349|consen 357 GLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDL 431 (725)
T ss_pred cceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEec
Confidence 34455789999999999887743 44555555554 35789999998653322222211 11111111
Q ss_pred ecCCCCC----------------------------------ceEEEEEEeCchhhHHH-----HHHHHHHhcCCccEEEE
Q 012728 224 KSSFNRP----------------------------------NLFYEVRYKDLLDDAYA-----DLCSVLKANGDTCAIVY 264 (457)
Q Consensus 224 ~~~~~~~----------------------------------~i~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~iIf 264 (457)
......| ++..-....+....... .-...++++...++|||
T Consensus 432 kgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiif 511 (725)
T KOG0349|consen 432 KGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIF 511 (725)
T ss_pred ccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEE
Confidence 1110000 00000000000011111 11223455667889999
Q ss_pred eCCcccHHHHHHHHHhCC---CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHH
Q 012728 265 CLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341 (457)
Q Consensus 265 ~~s~~~~~~l~~~L~~~g---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~ 341 (457)
|.|+.+|..+.+++.+.| ++|+.+||+..+.+|.+.++.|+.++.+.|||||++++|+||..+.++|+..+|.....
T Consensus 512 crtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~n 591 (725)
T KOG0349|consen 512 CRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTN 591 (725)
T ss_pred EeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccch
Confidence 999999999999999874 68999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCCceEEEEeccchHHHHHHHHHh
Q 012728 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (457)
Q Consensus 342 ~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~ 376 (457)
|+||+||+||+.+-|.++.++.....+.+..+-+.
T Consensus 592 yvhrigrvgraermglaislvat~~ekvwyh~c~s 626 (725)
T KOG0349|consen 592 YVHRIGRVGRAERMGLAISLVATVPEKVWYHWCKS 626 (725)
T ss_pred hhhhhhccchhhhcceeEEEeeccchheeehhhhc
Confidence 99999999999999999999887766666555444
No 87
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=2e-28 Score=253.89 Aligned_cols=311 Identities=14% Similarity=0.115 Sum_probs=191.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---C--CCeEEEEcchHHHHHHHHHHHHH-----cC-
Q 012728 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~--~~~~lvl~P~~~L~~q~~~~~~~-----~~- 102 (457)
|+..+|||+|..+......+..+++.||||+|||.+++..+.. . ..++++..||+++++++++++.. ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4445799999988654444567899999999999998776542 2 46899999999999999999874 22
Q ss_pred CceeEecCCCcHHHH-HH-------------------HHHH-hhcCCCcccEEEECCCcccCchhH--HHHHhhhhcCCc
Q 012728 103 IAGEFLSSTQTMQVK-TK-------------------IYED-LDSGKPSLRLLYVTPELTATPGFM--SKLKKIHSRGLL 159 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~-~~-------------------~~~~-~~~~~~~~~i~~~t~~~i~t~~~~--~~l~~~~~~~~l 159 (457)
......++....... .. .|.. .........++++|.+.+....+- ....+...+. -
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La-~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG-R 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc-c
Confidence 223333332221100 00 0000 000001135555555533211100 0111111111 2
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCC--------CCeEEe-------
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ--------NPLVLK------- 224 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~--------~~~~~~------- 224 (457)
++|||||+|.+..+ ....+..+.+.... ...++|+||||+|....+.+...++.. .|.+-.
T Consensus 441 svvIiDEVHAyD~y---m~~lL~~~L~~l~~-~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~ 516 (878)
T PRK09694 441 SVLIVDEVHAYDAY---MYGLLEAVLKAQAQ-AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQ 516 (878)
T ss_pred CeEEEechhhCCHH---HHHHHHHHHHHHHh-cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccce
Confidence 58999999997432 11222222222222 267899999999998887777654322 111100
Q ss_pred ---cCCC----CCceEEEEEEe--C---chhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCC---CceEeec
Q 012728 225 ---SSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAAYH 289 (457)
Q Consensus 225 ---~~~~----~~~i~~~~~~~--~---~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g---~~~~~~~ 289 (457)
.... .....+.+... . .....+..+.+.+ ..+++++|||||++.++.+++.|++.+ .++..+|
T Consensus 517 ~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llH 594 (878)
T PRK09694 517 RFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFH 594 (878)
T ss_pred eeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 0000 00111111111 1 0112222333222 356789999999999999999999764 6799999
Q ss_pred CCCCHHHH----HHHHHHH-hcCC---ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCC
Q 012728 290 AGLNDKAR----SSVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (457)
Q Consensus 290 ~~~~~~~r----~~~~~~f-~~g~---~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~ 354 (457)
|.++..+| .++++.| ++|+ ..|||||+++++|+|+ +++++|....| ...++||+||++|.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999999 4567788 5665 4799999999999999 58999998888 7899999999999875
No 88
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.96 E-value=3e-28 Score=258.37 Aligned_cols=298 Identities=18% Similarity=0.203 Sum_probs=193.6
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh--cC----CCeEEEEcchHHHHHHHHHHHHH-cCCceeEecC-CCcHH
Q 012728 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL--AK----PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS-TQTMQ 115 (457)
Q Consensus 44 ~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l--~~----~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~-~~~~~ 115 (457)
.+.+..+.+++.++++|+||||||. ++|.+ .. .+.+++..|.|--+...++++.. +|......-+ .....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~ 150 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFH 150 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCC
Confidence 3466666667778899999999997 34532 11 34677788988777777766655 4433211110 00000
Q ss_pred HHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEEEecccc-ccccCCCCHHHHHHHHHHHHhCCC
Q 012728 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPD 193 (457)
Q Consensus 116 ~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lViDEah~-~~~~~~~~~~~~~~l~~~~~~~~~ 193 (457)
.. ...+.++ .++|+|.+... .....+..+++|||||||. .++.+ |. ...+..+....++
T Consensus 151 ------~~---~s~~T~I------~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D--~L--L~lLk~il~~rpd 211 (1283)
T TIGR01967 151 ------DQ---VSSNTLV------KLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNID--FL--LGYLKQLLPRRPD 211 (1283)
T ss_pred ------cc---cCCCcee------eeccccHHHHHhhhCcccccCcEEEEcCcchhhccch--hH--HHHHHHHHhhCCC
Confidence 00 0112344 44555554333 3344567799999999994 55533 32 1234556666678
Q ss_pred ccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC-CCceEEEEEEeCc---hhhHHHHHHHHHH---hcCCccEEEEeC
Q 012728 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCL 266 (457)
Q Consensus 194 ~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~---~~~~~~~l~~~l~---~~~~~~~iIf~~ 266 (457)
.++|+||||++.. .+.+.++ ..|.+...... ...+.|....... ..++...+...+. ....+.+|||++
T Consensus 212 LKlIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLp 287 (1283)
T TIGR01967 212 LKIIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLP 287 (1283)
T ss_pred CeEEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCC
Confidence 9999999999754 3444443 33443332211 1122222111110 1123333333332 224578999999
Q ss_pred CcccHHHHHHHHHhCC---CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC------
Q 012728 267 ERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------ 337 (457)
Q Consensus 267 s~~~~~~l~~~L~~~g---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~------ 337 (457)
+..+++.+++.|.+.+ +.+..+||+++.++|..+++.+ +..+|||||+++++|||+|+|++||+++.++
T Consensus 288 g~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 288 GEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred CHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 9999999999999764 4588999999999999886543 3468999999999999999999999998543
Q ss_pred ------------CHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 012728 338 ------------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (457)
Q Consensus 338 ------------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~ 369 (457)
|.++|.||.|||||.| +|.|+.+++..+...
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6689999999999997 999999999776544
No 89
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.1e-26 Score=231.84 Aligned_cols=324 Identities=21% Similarity=0.212 Sum_probs=227.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH--
Q 012728 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (457)
Q Consensus 26 ~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~-- 100 (457)
+.++....+|.. |++.|.-+.-.+..|+ +..+.||.|||+++.+|++. .+..+-+++|+--||.+-++.+..
T Consensus 69 vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 69 AREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred HHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHH
Confidence 334444556755 7888888776666665 99999999999999888764 388899999999999998887665
Q ss_pred --cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccc-cC
Q 012728 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-WG 174 (457)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~-~~ 174 (457)
+|+.+..+.+......+...+. .+|.++|..-++-.-....+ .+......+.+.||||+|.++= ..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDea 217 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEA 217 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccC
Confidence 7888888877766665544432 67777776544322111111 1112234477888888888742 00
Q ss_pred ----------CCCHHHHHHHHHHHHhC-----------------------------------------------------
Q 012728 175 ----------HDFRPSYRKLSSLRNYL----------------------------------------------------- 191 (457)
Q Consensus 175 ----------~~~~~~~~~l~~~~~~~----------------------------------------------------- 191 (457)
......|..+..+...+
T Consensus 218 rtPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~ 297 (796)
T PRK12906 218 RTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTAL 297 (796)
T ss_pred CCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhH
Confidence 00011111111110000
Q ss_pred --------------------------------------CC--------------------------------------cc
Q 012728 192 --------------------------------------PD--------------------------------------VP 195 (457)
Q Consensus 192 --------------------------------------~~--------------------------------------~~ 195 (457)
++ .+
T Consensus 298 ~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~k 377 (796)
T PRK12906 298 AHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKK 377 (796)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcch
Confidence 00 02
Q ss_pred EEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHhc--CCccEEEEeCCcccH
Q 012728 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTC 271 (457)
Q Consensus 196 ~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~~--~~~~~iIf~~s~~~~ 271 (457)
+.+||+|...+ ..++....++. ++..+.++|.+..... .......|...+.+.+... .+.++||||+|+..+
T Consensus 378 l~GmTGTa~~e-~~Ef~~iY~l~---vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~s 453 (796)
T PRK12906 378 LSGMTGTAKTE-EEEFREIYNME---VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESS 453 (796)
T ss_pred hhccCCCCHHH-HHHHHHHhCCC---EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHH
Confidence 45677776543 23444444333 4555666666543332 1223356888888887543 778999999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC---Ccc-----EEEEecCCCCHHHHH
Q 012728 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAFY 343 (457)
Q Consensus 272 ~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip---~v~-----~Vi~~~~p~s~~~~~ 343 (457)
+.++..|.+.|++...+|+++..+++..+.+.++.|. |+|||++++||.||+ +|. +||+++.|.|...|.
T Consensus 454 e~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~ 531 (796)
T PRK12906 454 ERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDN 531 (796)
T ss_pred HHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHH
Confidence 9999999999999999999999888888887777777 999999999999994 899 999999999999999
Q ss_pred HHhcccCCCCCCceEEEEeccch
Q 012728 344 QESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 344 Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
|+.||+||.|.+|.+..|++.+|
T Consensus 532 Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 532 QLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred HHhhhhccCCCCcceEEEEeccc
Confidence 99999999999999999988764
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=7.4e-27 Score=231.55 Aligned_cols=318 Identities=19% Similarity=0.233 Sum_probs=217.5
Q ss_pred HhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchHHHHHHHHHHHHHcCCceeEe
Q 012728 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (457)
Q Consensus 32 ~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 108 (457)
..|+|+ +-++|++|+-.+..|.+++|.|+|.+|||+++..++. .+..++++-+|-++|-+|.++.|+...-....+
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLl 370 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLL 370 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcccccee
Confidence 347777 8999999999999999999999999999998765443 347899999999999999999999843333333
Q ss_pred cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012728 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
.+... .+++...+++|.|++.+-- ....--.+.+..||+||+|-+.+-... ...+++.
T Consensus 371 TGDvq-------------inPeAsCLIMTTEILRsML----YrgadliRDvE~VIFDEVHYiND~eRG-----vVWEEVi 428 (1248)
T KOG0947|consen 371 TGDVQ-------------INPEASCLIMTTEILRSML----YRGADLIRDVEFVIFDEVHYINDVERG-----VVWEEVI 428 (1248)
T ss_pred eccee-------------eCCCcceEeehHHHHHHHH----hcccchhhccceEEEeeeeeccccccc-----ccceeee
Confidence 33321 1234666666666543311 011112334889999999998652211 3344555
Q ss_pred HhCC-CccEEEEeccCChhHHHHHHHHcCCC-CCeEEecCC-CCCceEEEEEEeCc------------------------
Q 012728 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSF-NRPNLFYEVRYKDL------------------------ 241 (457)
Q Consensus 189 ~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~~------------------------ 241 (457)
-++| .+++|++|||.|+.. ++..|+|-. ...++..+. .||--...+.....
T Consensus 429 IMlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 429 IMLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred eeccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 5667 789999999999885 457777643 222222222 22210000000000
Q ss_pred -----------------------------------------hhh---HHHHHHHHHHhcCCccEEEEeCCcccHHHHHHH
Q 012728 242 -----------------------------------------LDD---AYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (457)
Q Consensus 242 -----------------------------------------~~~---~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~ 277 (457)
... .+-.+...++..+--+++|||-++..|++.++.
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 001 234455556666667899999999999999999
Q ss_pred HHhCCC---------------------------------------ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 012728 278 LSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (457)
Q Consensus 278 L~~~g~---------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 318 (457)
|....+ .++.+|||+=+--+.-+.-.|+.|-++||+||..+
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETF 666 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETF 666 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhh
Confidence 975432 46889999999899999999999999999999999
Q ss_pred cccCCCCCccEEEEecCC---------CCHHHHHHHhcccCCCCC--CceEEEEeccc--hHHHHHHHHH
Q 012728 319 GMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL--PSKSLLYYGMD--DRRRMEFILS 375 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p---------~s~~~~~Qr~GRagR~g~--~g~~~~~~~~~--~~~~~~~i~~ 375 (457)
++|||+|.-.+|+ -.+- -.+-+|.|++|||||.|- .|.++++.... +...++.++-
T Consensus 667 AMGVNMPARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~ 735 (1248)
T KOG0947|consen 667 AMGVNMPARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIM 735 (1248)
T ss_pred hhhcCCCceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhc
Confidence 9999999655555 3332 268899999999999985 46666655433 4455555543
No 91
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.2e-26 Score=201.65 Aligned_cols=297 Identities=19% Similarity=0.224 Sum_probs=199.9
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchhhH-HHH--HhhhcCCCeEEEEcchHHHHHHHHHHHHHcC--CceeEe
Q 012728 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM-CYQ--IPALAKPGIVLVVSPLIALMENQVIGLKEKG--IAGEFL 108 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~-~~~--l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~--~~~~~~ 108 (457)
+++|+|+.+-..+. +.++.+++|-||+|||- .|. -.++..++++.+.+|....+.+.+.++++.. .....+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L 176 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLL 176 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeE
Confidence 79999999876665 56899999999999994 332 3457779999999999999999999999832 344444
Q ss_pred cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012728 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
.+..... +-+|-+++|...+.++.+. +|++||||+|.+.-.. + ...+..+...+
T Consensus 177 yg~S~~~-------------------fr~plvVaTtHQLlrFk~a-----FD~liIDEVDAFP~~~-d-~~L~~Av~~ar 230 (441)
T COG4098 177 YGDSDSY-------------------FRAPLVVATTHQLLRFKQA-----FDLLIIDEVDAFPFSD-D-QSLQYAVKKAR 230 (441)
T ss_pred ecCCchh-------------------ccccEEEEehHHHHHHHhh-----ccEEEEeccccccccC-C-HHHHHHHHHhh
Confidence 4433221 1133355555544444433 7899999999873211 1 11122222222
Q ss_pred HhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceE-EEEEEeCchhhHHH------HHHHHHHhc--CCc
Q 012728 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF-YEVRYKDLLDDAYA------DLCSVLKAN--GDT 259 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~------~l~~~l~~~--~~~ 259 (457)
. .+...+.+|||++....+++.. +-.....+..-+++..+. -.+........++. .|..+++.. .+.
T Consensus 231 k--~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~ 306 (441)
T COG4098 231 K--KEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGR 306 (441)
T ss_pred c--ccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCC
Confidence 2 3677999999999887765543 211222222223322221 11222222222221 456666553 567
Q ss_pred cEEEEeCCcccHHHHHHHHHhC--CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC--
Q 012728 260 CAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (457)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~--g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~-- 335 (457)
+++||+++.+..++++..|++. ...+...|+. +..|.+..+.|++|+..+||+|.+++||+.+|++++.+.-.-
T Consensus 307 P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~ 384 (441)
T COG4098 307 PVLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHR 384 (441)
T ss_pred cEEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcc
Confidence 8999999999999999999654 3345778884 567889999999999999999999999999999998775443
Q ss_pred CCCHHHHHHHhcccCCCCC--CceEEEEeccch
Q 012728 336 PKSMEAFYQESGRAGRDQL--PSKSLLYYGMDD 366 (457)
Q Consensus 336 p~s~~~~~Qr~GRagR~g~--~g~~~~~~~~~~ 366 (457)
-.+.+..+|..||+||.-. .|..+.|.....
T Consensus 385 vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 385 VFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred cccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 3578999999999999743 466666655443
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.95 E-value=1.5e-26 Score=242.09 Aligned_cols=309 Identities=17% Similarity=0.159 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHH--Hhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012728 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ--IPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~--l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
+|+|||.+++.++. +|.+.|+...+|.|||+..+ +..+. ..+++|||||. ++..+|.+++.++......
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999999886 56789999999999998543 22222 14679999996 6678899999986543332
Q ss_pred ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 012728 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~ 187 (457)
+........+........ .....+++++|++.+.. -........+++||+||||++.... ..+...
T Consensus 248 ~~~~G~~~eR~~~~~~~~-~~~~~dVvITSYe~l~~------e~~~L~k~~W~~VIvDEAHrIKN~~-------Sklska 313 (1033)
T PLN03142 248 VKFHGNPEERAHQREELL-VAGKFDVCVTSFEMAIK------EKTALKRFSWRYIIIDEAHRIKNEN-------SLLSKT 313 (1033)
T ss_pred EEEeCCHHHHHHHHHHHh-cccCCCcceecHHHHHH------HHHHhccCCCCEEEEcCccccCCHH-------HHHHHH
Confidence 222222222222221111 11235666666655432 2222233358999999999986533 333444
Q ss_pred HHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC---------------------------------------CC
Q 012728 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---------------------------------------FN 228 (457)
Q Consensus 188 ~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~ 228 (457)
...+.....+++||||-.+...+++..+.+-.|..+... ..
T Consensus 314 lr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~ 393 (1033)
T PLN03142 314 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKG 393 (1033)
T ss_pred HHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhh
Confidence 444555667999999987777766666555443322110 00
Q ss_pred CCceEEEEEEeCch--------------------------------------------------------------hhHH
Q 012728 229 RPNLFYEVRYKDLL--------------------------------------------------------------DDAY 246 (457)
Q Consensus 229 ~~~i~~~~~~~~~~--------------------------------------------------------------~~~~ 246 (457)
.|............ ..|+
T Consensus 394 LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl 473 (1033)
T PLN03142 394 LPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKM 473 (1033)
T ss_pred CCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHH
Confidence 01111111100000 0122
Q ss_pred HHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC---CceEEEEecccccc
Q 012728 247 ADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFGMG 321 (457)
Q Consensus 247 ~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLvaT~~~~~G 321 (457)
..|..++.. ..+.++|||+........|.+.|...|+.+..++|+++..+|..+++.|++. ...+|++|.+.+.|
T Consensus 474 ~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlG 553 (1033)
T PLN03142 474 VLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLG 553 (1033)
T ss_pred HHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccC
Confidence 222333322 2467899999999999999999999999999999999999999999999753 34579999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE
Q 012728 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 322 ldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~ 361 (457)
||+..+++||+||++||+....|++||+.|.|+...+.+|
T Consensus 554 INLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~Vy 593 (1033)
T PLN03142 554 INLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVF 593 (1033)
T ss_pred CchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEE
Confidence 9999999999999999999999999999999988765443
No 93
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.95 E-value=2.3e-26 Score=245.30 Aligned_cols=304 Identities=20% Similarity=0.239 Sum_probs=188.7
Q ss_pred CCCHHHHHHHHHHH----cC-CCEEEEcCCCchhhHHHHHhh--h-c--CCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012728 38 QFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQIPA--L-A--KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~----~~-~~~lv~a~TGsGKT~~~~l~~--l-~--~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
.+|+||.+|+..+. +| +.+++++|||||||.+++..+ + . ..+++|+|+|+++|+.|..+.++.++.....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 58999999998775 23 579999999999998754222 2 1 2579999999999999999999987543221
Q ss_pred -ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEEEeccccccc------cC-CCC-
Q 012728 108 -LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCISS------WG-HDF- 177 (457)
Q Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lViDEah~~~~------~~-~~~- 177 (457)
........ ...... ...+.+++++|...+........- ........+++||+||||+... .+ ..|
T Consensus 493 ~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~ 567 (1123)
T PRK11448 493 TFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFR 567 (1123)
T ss_pred chhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccc
Confidence 11100000 000011 122367777766644321110000 0112345688999999999631 00 001
Q ss_pred --HHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCC-------------------CCeEEecCCCCCceEEEE
Q 012728 178 --RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ-------------------NPLVLKSSFNRPNLFYEV 236 (457)
Q Consensus 178 --~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~i~~~~ 236 (457)
...+.....++..+ +...++|||||...... .++.. .|..+........+.+..
T Consensus 568 ~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~----~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~ 642 (1123)
T PRK11448 568 DQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTE----IFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEK 642 (1123)
T ss_pred hhhhHHHHHHHHHhhc-CccEEEEecCCccchhH----HhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccc
Confidence 11234445555544 56789999999754322 22210 012221111111010000
Q ss_pred --------------EEeCchh--------------------hHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC-
Q 012728 237 --------------RYKDLLD--------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG- 281 (457)
Q Consensus 237 --------------~~~~~~~--------------------~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~- 281 (457)
......+ .....+.+.+....++++||||.++++|+.+++.|.+.
T Consensus 643 ~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f 722 (1123)
T PRK11448 643 GEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAF 722 (1123)
T ss_pred cchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 0000000 00112333333334578999999999999999887653
Q ss_pred -----CC---ceEeecCCCCHHHHHHHHHHHhcCCc-eEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC
Q 012728 282 -----GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (457)
Q Consensus 282 -----g~---~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~ 352 (457)
++ .+..+||+.+ ++..++++|+++.. .|+|+++++++|+|+|.++.||++.++.|...|+||+||+.|.
T Consensus 723 ~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~ 800 (1123)
T PRK11448 723 KKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRL 800 (1123)
T ss_pred HhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccC
Confidence 22 4567888875 46789999999887 6999999999999999999999999999999999999999996
Q ss_pred C
Q 012728 353 Q 353 (457)
Q Consensus 353 g 353 (457)
.
T Consensus 801 ~ 801 (1123)
T PRK11448 801 C 801 (1123)
T ss_pred C
Confidence 4
No 94
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.8e-25 Score=222.58 Aligned_cols=321 Identities=20% Similarity=0.185 Sum_probs=224.6
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh-c--CCCeEEEEcchHHHHHHHHHHHHH----c
Q 012728 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-A--KPGIVLVVSPLIALMENQVIGLKE----K 101 (457)
Q Consensus 29 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l-~--~~~~~lvl~P~~~L~~q~~~~~~~----~ 101 (457)
+.....|.. |++.|.-..-.+..|+ +..++||+|||+++.+|++ . .+..+-|++|+..||.|.++.+.. +
T Consensus 73 a~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 73 ASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred HHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 333445655 7788887766666664 9999999999999999985 2 266688999999999998888776 5
Q ss_pred CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccc-cC---
Q 012728 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-WG--- 174 (457)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~-~~--- 174 (457)
|+.+..+.++.....+...+. .+|+++||.-++-.-....+ ......+.+.++||||||.++= ..
T Consensus 150 Glsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtp 221 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTP 221 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCc
Confidence 788888887776665544421 67877777655321111111 1112345688999999999852 00
Q ss_pred -------CCCHHHHHHHHHHHHhCC---------Cc--------------------------------------------
Q 012728 175 -------HDFRPSYRKLSSLRNYLP---------DV-------------------------------------------- 194 (457)
Q Consensus 175 -------~~~~~~~~~l~~~~~~~~---------~~-------------------------------------------- 194 (457)
......|..+..+...+. +.
T Consensus 222 LiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~ 301 (830)
T PRK12904 222 LIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELF 301 (830)
T ss_pred eeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 001112222222222210 00
Q ss_pred -----------------------------------------------------------------cEEEEeccCChhHHH
Q 012728 195 -----------------------------------------------------------------PILALTATAAPKVQK 209 (457)
Q Consensus 195 -----------------------------------------------------------------~~v~lSAT~~~~~~~ 209 (457)
++.+||+|...+. .
T Consensus 302 ~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~-~ 380 (830)
T PRK12904 302 KRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEA-E 380 (830)
T ss_pred hcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHH-H
Confidence 1445555554332 2
Q ss_pred HHHHHcCCCCCeEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCce
Q 012728 210 DVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (457)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~ 285 (457)
++....++ .++..+.++|.+.... .......+|+..+.+.+.. ..+.++||||+|++.++.++..|.+.|+++
T Consensus 381 E~~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~ 457 (830)
T PRK12904 381 EFREIYNL---DVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPH 457 (830)
T ss_pred HHHHHhCC---CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCce
Confidence 33333322 2444455666554331 1122335788888888866 577899999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCc--------------------------------------
Q 012728 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV-------------------------------------- 327 (457)
Q Consensus 286 ~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v-------------------------------------- 327 (457)
..+|+. +.+|...+..|+.+...|+|||++++||+||+=-
T Consensus 458 ~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG 535 (830)
T PRK12904 458 NVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG 535 (830)
T ss_pred EeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC
Confidence 999995 7889999999999999999999999999999742
Q ss_pred cEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 328 ~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
=+||....|.|..--.|-.||+||.|.+|.+..|++-+|
T Consensus 536 LhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 536 LHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred CEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 278888899999999999999999999999998887654
No 95
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=7.8e-25 Score=222.76 Aligned_cols=312 Identities=21% Similarity=0.180 Sum_probs=208.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH----cCCcee
Q 012728 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE----KGIAGE 106 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~----~~~~~~ 106 (457)
.|.. +++.|.-.--.+..| -+..++||+|||++|.+|++.. +..+.|++|++.||.|.++.+.. +|+.+.
T Consensus 79 lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~ 155 (896)
T PRK13104 79 LGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVG 155 (896)
T ss_pred cCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHhcccCceEE
Confidence 4433 555665554445455 4999999999999999998743 66799999999999999988877 467777
Q ss_pred EecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh-------hhcCCccEEEEeccccccc-c-----
Q 012728 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-------HSRGLLNLVAIDEAHCISS-W----- 173 (457)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~-------~~~~~l~~lViDEah~~~~-~----- 173 (457)
.+.++.........+ .++|+++||..++- ..+.+. ...+.+.++||||||.++- .
T Consensus 156 ~i~gg~~~~~r~~~y--------~~dIvygT~grlgf----DyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 156 VIYPDMSHKEKQEAY--------KADIVYGTNNEYGF----DYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred EEeCCCCHHHHHHHh--------CCCEEEECChhhhH----HHHhcCCccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 777766555443322 15676666654411 112111 1124689999999999852 0
Q ss_pred ---C--CCCHHHHHHHHHHHHhCC---------------CccEEEEecc-------------------------------
Q 012728 174 ---G--HDFRPSYRKLSSLRNYLP---------------DVPILALTAT------------------------------- 202 (457)
Q Consensus 174 ---~--~~~~~~~~~l~~~~~~~~---------------~~~~v~lSAT------------------------------- 202 (457)
| ..-...|..+..+...+. +.+.+.+|..
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 1 111223333332222111 1223333332
Q ss_pred --------------------------------------------------------------------------------
Q 012728 203 -------------------------------------------------------------------------------- 202 (457)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (457)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred -----CChhHHHHHHHHcCCCCCeEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHH
Q 012728 203 -----AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDE 273 (457)
Q Consensus 203 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~ 273 (457)
...+. .++.... +-.++..+.++|.+.... .......+|+..+.+.++. ..+.++||||+|++.++.
T Consensus 384 GMTGTa~te~-~Ef~~iY---~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ 459 (896)
T PRK13104 384 GMTGTADTEA-YEFQQIY---NLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEF 459 (896)
T ss_pred cCCCCChhHH-HHHHHHh---CCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHH
Confidence 11110 0111111 111222333344332211 1122234677777766643 467899999999999999
Q ss_pred HHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC---------------------------
Q 012728 274 LSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--------------------------- 326 (457)
Q Consensus 274 l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~--------------------------- 326 (457)
++..|.+.|++...+|+++.++++..+.+.|+.|. |+|||++++||+||.=
T Consensus 460 ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~ 537 (896)
T PRK13104 460 LSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEW 537 (896)
T ss_pred HHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHh
Confidence 99999999999999999999999999999999995 9999999999999861
Q ss_pred -----------ccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 327 -----------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 327 -----------v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
==+||-...+.|-.--.|-.||+||.|.+|.+..|++-+|
T Consensus 538 ~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 538 QKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1278888889999999999999999999999998887654
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=227.99 Aligned_cols=340 Identities=18% Similarity=0.271 Sum_probs=229.2
Q ss_pred ChHHHHHHHHHHhcCCCCCCHHHHHHH--HHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHH
Q 012728 21 HEKEALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 21 ~l~~~~~~~l~~~~g~~~~~~~Q~~~i--~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~ 94 (457)
+++....-..+. .|...++.||.+++ +.++.++|.+..+||+.|||+++.+.++. ....++.+.|..+.+.+.
T Consensus 207 ~~~k~~~~~~~~-kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek 285 (1008)
T KOG0950|consen 207 LPTKVSHLYAKD-KGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEK 285 (1008)
T ss_pred CchHHHHHHHHh-hhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHH
Confidence 344444445554 69999999999998 77888999999999999999999877665 478899999999999888
Q ss_pred HHHHHHcCCc----eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccc
Q 012728 95 VIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (457)
Q Consensus 95 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~ 170 (457)
...+..+... +....+.... ........+.++|.|.-.+ ..+.+........+.+||+||.|.+
T Consensus 286 ~~~l~~~~~~~G~~ve~y~g~~~p----------~~~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi 353 (1008)
T KOG0950|consen 286 ISALSPFSIDLGFPVEEYAGRFPP----------EKRRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMI 353 (1008)
T ss_pred HhhhhhhccccCCcchhhcccCCC----------CCcccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeee
Confidence 8887775433 3222211111 0112235667777665443 3444444555666899999999999
Q ss_pred cccCCCCHHHHHHHHHHHHhCC--CccEEEEeccCChhHHHHHHHHcCCC------CCeEEecCCCCCceEEEEEEeCch
Q 012728 171 SSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQ------NPLVLKSSFNRPNLFYEVRYKDLL 242 (457)
Q Consensus 171 ~~~~~~~~~~~~~l~~~~~~~~--~~~~v~lSAT~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~ 242 (457)
.+-+.+.... .-+..++-... ..|+|+||||+++.. ++..|+.-. .|+.+.....-....+... .
T Consensus 354 ~d~~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~----r 426 (1008)
T KOG0950|consen 354 GDKGRGAILE-LLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS----R 426 (1008)
T ss_pred eccccchHHH-HHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecccCcccchhccCCCcccccch----h
Confidence 8755442111 12233333333 356999999998863 345554311 1221111111111111111 0
Q ss_pred hhHHHHHHH----------------HHHh--cCCccEEEEeCCcccHHHHHHHHHhC-----------C-----------
Q 012728 243 DDAYADLCS----------------VLKA--NGDTCAIVYCLERTTCDELSAYLSAG-----------G----------- 282 (457)
Q Consensus 243 ~~~~~~l~~----------------~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~-----------g----------- 282 (457)
...+..+.. +..+ ..+.++||||+++..|+.++..+... +
T Consensus 427 ~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~l 506 (1008)
T KOG0950|consen 427 NKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLL 506 (1008)
T ss_pred hHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHh
Confidence 111111111 1111 12446999999999999888655321 1
Q ss_pred ----------------CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC----CCCHHHH
Q 012728 283 ----------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEAF 342 (457)
Q Consensus 283 ----------------~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~----p~s~~~~ 342 (457)
+.+.++|+|++.++|..+...|+.|...|++||+.++.|+|+|..+++|-.-. ..+..+|
T Consensus 507 r~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Y 586 (1008)
T KOG0950|consen 507 RRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEY 586 (1008)
T ss_pred hcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhH
Confidence 25789999999999999999999999999999999999999999888886432 3477899
Q ss_pred HHHhcccCCCCC--CceEEEEeccchHHHHHHHHHhcccC
Q 012728 343 YQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQSK 380 (457)
Q Consensus 343 ~Qr~GRagR~g~--~g~~~~~~~~~~~~~~~~i~~~~~~~ 380 (457)
.||+|||||.|- .|.+++++...+.+.+..++....+.
T Consensus 587 kQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~~ 626 (1008)
T KOG0950|consen 587 KQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLKP 626 (1008)
T ss_pred HhhhhhhhhcccccCcceEEEeeccchhHHHHHHhccccc
Confidence 999999999974 58899999999998888888766543
No 97
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.9e-25 Score=229.70 Aligned_cols=307 Identities=23% Similarity=0.255 Sum_probs=206.0
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEec
Q 012728 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 109 (457)
.+||+ +-++|++++..+..|.+++|+||||+|||.++..++ +.++.++++.+|.+||.+|.++++.......
T Consensus 115 ~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv---- 189 (1041)
T COG4581 115 EYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV---- 189 (1041)
T ss_pred hCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh----
Confidence 47888 999999999999999999999999999998866544 4568889999999999999999988732221
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 012728 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~ 189 (457)
........+.....++..++++|.|++.+-.+ ........+..||+||+|.+.+.... ...+...-
T Consensus 190 -----~~~vGL~TGDv~IN~~A~clvMTTEILRnMly----rg~~~~~~i~~ViFDEvHyi~D~eRG-----~VWEE~Ii 255 (1041)
T COG4581 190 -----ADMVGLMTGDVSINPDAPCLVMTTEILRNMLY----RGSESLRDIEWVVFDEVHYIGDRERG-----VVWEEVII 255 (1041)
T ss_pred -----hhhccceecceeeCCCCceEEeeHHHHHHHhc----cCcccccccceEEEEeeeeccccccc-----hhHHHHHH
Confidence 00000111112223345555555544422111 11234556899999999999764322 34455556
Q ss_pred hCC-CccEEEEeccCChhHHHHHHHHcCC--CCCeEEecCCCCCceEEEEEE-----------eCc-hhhH---------
Q 012728 190 YLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPNLFYEVRY-----------KDL-LDDA--------- 245 (457)
Q Consensus 190 ~~~-~~~~v~lSAT~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~-----------~~~-~~~~--------- 245 (457)
.+| ..++++||||.++.. .+..|++. ..+..+.....||.-...+.. ... ....
T Consensus 256 ~lP~~v~~v~LSATv~N~~--EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNAE--EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred hcCCCCcEEEEeCCCCCHH--HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 677 579999999999884 45666653 344444444344321111110 000 0000
Q ss_pred ---------------------------------HHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC-----------
Q 012728 246 ---------------------------------YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----------- 281 (457)
Q Consensus 246 ---------------------------------~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~----------- 281 (457)
.-.+...+...+.-++|+|+-++..|+..+..+...
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~ 413 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERA 413 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHH
Confidence 011222333344567999999999998887766521
Q ss_pred -----------------CC-------------ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE
Q 012728 282 -----------------GI-------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (457)
Q Consensus 282 -----------------g~-------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi 331 (457)
++ .+..+|++|=+..|..+.+.|+.|-++|+++|.+++.|+|+|.=++|+
T Consensus 414 i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~ 493 (1041)
T COG4581 414 IREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF 493 (1041)
T ss_pred HHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee
Confidence 11 245899999999999999999999999999999999999999544444
Q ss_pred EecC---------CCCHHHHHHHhcccCCCCCC--ceEEEE
Q 012728 332 HFNI---------PKSMEAFYQESGRAGRDQLP--SKSLLY 361 (457)
Q Consensus 332 ~~~~---------p~s~~~~~Qr~GRagR~g~~--g~~~~~ 361 (457)
+.. .-++.+|.|+.|||||.|.. |.+++.
T Consensus 494 -~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 494 -TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred -eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 332 34799999999999999965 566655
No 98
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=7.5e-26 Score=219.32 Aligned_cols=314 Identities=20% Similarity=0.255 Sum_probs=206.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEec
Q 012728 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~ 109 (457)
.|.|. +-|+|..++.-+-++++++|.|.|.+|||.++..++ +....++|+-+|-++|-+|.++++..-...+....
T Consensus 125 ~YPF~-LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMT 203 (1041)
T KOG0948|consen 125 TYPFT-LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMT 203 (1041)
T ss_pred CCCcc-cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceee
Confidence 35666 889999999999999999999999999998765543 44588999999999999999999887333333333
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEEeccccccc--cCCCCHHHHHHHH
Q 012728 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLS 185 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lViDEah~~~~--~~~~~~~~~~~l~ 185 (457)
+... ..++..-+++|.|+ +..+... --.+.+..||+||+|-|-+ +|- ..+
T Consensus 204 GDVT-------------InP~ASCLVMTTEI------LRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGV-------VWE 257 (1041)
T KOG0948|consen 204 GDVT-------------INPDASCLVMTTEI------LRSMLYRGSEVMREVAWVIFDEIHYMRDKERGV-------VWE 257 (1041)
T ss_pred ccee-------------eCCCCceeeeHHHH------HHHHHhccchHhheeeeEEeeeehhccccccce-------eee
Confidence 2221 12334444444443 3333222 2244588999999999854 331 111
Q ss_pred HHHHhCC-CccEEEEeccCChhHHHHHHHHcCC---CCC-eEEecCCCCC-----------ceEEEEEEeC-chhhHHH-
Q 012728 186 SLRNYLP-DVPILALTATAAPKVQKDVMESLCL---QNP-LVLKSSFNRP-----------NLFYEVRYKD-LLDDAYA- 247 (457)
Q Consensus 186 ~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~-----------~i~~~~~~~~-~~~~~~~- 247 (457)
+-.-.+| +.+.+++|||+|+.. .+.+|+.. ... +++..-...| .++..+..+. ..++.+.
T Consensus 258 ETIIllP~~vr~VFLSATiPNA~--qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~ 335 (1041)
T KOG0948|consen 258 ETIILLPDNVRFVFLSATIPNAR--QFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQK 335 (1041)
T ss_pred eeEEeccccceEEEEeccCCCHH--HHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHH
Confidence 1112234 789999999999874 33555432 222 2222111111 1222222211 1112221
Q ss_pred -------------------------------------HHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCC-------
Q 012728 248 -------------------------------------DLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------- 283 (457)
Q Consensus 248 -------------------------------------~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~------- 283 (457)
.+...+-..+..++|||+-++++|+.+|-.+.++.+
T Consensus 336 am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~ 415 (1041)
T KOG0948|consen 336 AMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKE 415 (1041)
T ss_pred HHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHH
Confidence 122222334556899999999999999988865432
Q ss_pred --------------------------------ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEE
Q 012728 284 --------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331 (457)
Q Consensus 284 --------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi 331 (457)
.+.++|||+-+--++-+.-.|+.|-+++|+||..++.|+|+|.-++|+
T Consensus 416 ~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF 495 (1041)
T KOG0948|consen 416 LVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF 495 (1041)
T ss_pred HHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE
Confidence 468899999888888888899999999999999999999999655554
Q ss_pred EecCC---------CCHHHHHHHhcccCCCCCC--ceEEEEeccc-hHHHHHHHHHh
Q 012728 332 HFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLYYGMD-DRRRMEFILSK 376 (457)
Q Consensus 332 ~~~~p---------~s~~~~~Qr~GRagR~g~~--g~~~~~~~~~-~~~~~~~i~~~ 376 (457)
...- -|--+|+|+.|||||.|.. |.++++++.. +....+.+++.
T Consensus 496 -T~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG 551 (1041)
T KOG0948|consen 496 -TAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKG 551 (1041)
T ss_pred -eeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcC
Confidence 3321 1566899999999999864 6667666644 55555555543
No 99
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=3.4e-24 Score=223.01 Aligned_cols=312 Identities=21% Similarity=0.190 Sum_probs=197.0
Q ss_pred CCHHHHHHHHHHHcC---C-CEEEEcCCCchhhHHHHHhhhc-------CCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012728 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~---~-~~lv~a~TGsGKT~~~~l~~l~-------~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
.++.|..++..+.+. . .+++.||||.|||.+.+.+++. ...+++++.|+++++++++++++........
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 478999999888753 4 6889999999999988876643 2679999999999999999999873322222
Q ss_pred ecC----CCcHHHHHHHHHHhhcCCCcccEEEECC---------CcccCchhHHHH-Hhhhh---c--CCccEEEEeccc
Q 012728 108 LSS----TQTMQVKTKIYEDLDSGKPSLRLLYVTP---------ELTATPGFMSKL-KKIHS---R--GLLNLVAIDEAH 168 (457)
Q Consensus 108 ~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~t~---------~~i~t~~~~~~l-~~~~~---~--~~l~~lViDEah 168 (457)
... .......... .........+. ..+.++...... ..... + -...++|+||+|
T Consensus 276 ~~~~~h~~~~~~~~~~~-------~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 276 IGKSLHSSSKEPLLLEP-------DQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred ccccccccccchhhhcc-------ccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHH
Confidence 111 1111100000 00000111111 112222111110 00000 0 014689999999
Q ss_pred cccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC----CCCCceEEEEEEeCchhh
Q 012728 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDD 244 (457)
Q Consensus 169 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~ 244 (457)
.+.+.. .......+..+... -+.++|++|||+|+...+.+....+-......... .+.+.+..... ... .+
T Consensus 349 ~~~~~~--~~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~-~~ 423 (733)
T COG1203 349 LYADET--MLAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDV-ED 423 (733)
T ss_pred hhcccc--hHHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhh-hh
Confidence 987653 22222233222222 27899999999999998888777765444333222 11111111100 000 01
Q ss_pred HH-HHHHHHH--HhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh----cCCceEEEEecc
Q 012728 245 AY-ADLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVA 317 (457)
Q Consensus 245 ~~-~~l~~~l--~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~ 317 (457)
.. ..+.... ....+.+++|.|||+..|.++++.|+..+.++..+||.+...+|.+.++.+. .+...|+|||++
T Consensus 424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQV 503 (733)
T COG1203 424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQV 503 (733)
T ss_pred hhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeE
Confidence 10 0111111 2235678999999999999999999999888999999999999998888654 468889999999
Q ss_pred ccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCC--CCceEEEEeccc
Q 012728 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD 365 (457)
Q Consensus 318 ~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g--~~g~~~~~~~~~ 365 (457)
++.|+|+. .+++|-= +..+.+.+||+||++|.| ..|..+++....
T Consensus 504 IEagvDid-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~ 550 (733)
T COG1203 504 IEAGVDID-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEE 550 (733)
T ss_pred EEEEeccc-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeeccc
Confidence 99999984 6666543 445999999999999999 567777775543
No 100
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.1e-23 Score=209.19 Aligned_cols=322 Identities=20% Similarity=0.234 Sum_probs=233.3
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHH-cCCceeEec
Q 012728 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~ 109 (457)
.+++.|..++..+... +..++.+.||||||-+|+-. .+..++.+|+++|-.+|..|..++++. +|.+...++
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlH 277 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLH 277 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhc
Confidence 5788999999998765 57899999999999998743 466799999999999999999999997 899999999
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCC-CCHHHHHHHHHHH
Q 012728 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLR 188 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~-~~~~~~~~l~~~~ 188 (457)
+..+...+...|.....+. .+++++|---+.+| +.++.+|||||-|.-.-... ..+..-..+..++
T Consensus 278 S~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~P-----------f~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~R 344 (730)
T COG1198 278 SGLSPGERYRVWRRARRGE--ARVVIGTRSALFLP-----------FKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLR 344 (730)
T ss_pred ccCChHHHHHHHHHHhcCC--ceEEEEechhhcCc-----------hhhccEEEEeccccccccCCcCCCcCHHHHHHHH
Confidence 9999999999999998887 88988887766665 34589999999998632111 1222235566777
Q ss_pred HhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC---CCceEEEEEEeCchhh---HHHHHHHHHHh--cCCcc
Q 012728 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKDLLDD---AYADLCSVLKA--NGDTC 260 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~~---~~~~l~~~l~~--~~~~~ 260 (457)
....++++|+-||||+-+....+.. +......+..-.. .+++.+........+. --..|.+.+++ ..+++
T Consensus 345 a~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ 422 (730)
T COG1198 345 AKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQ 422 (730)
T ss_pred HHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCe
Confidence 7778999999999999887664421 1111112211111 2333332222111111 11233343432 24677
Q ss_pred EEEEeCCc------------------------------------------------------------ccHHHHHHHHHh
Q 012728 261 AIVYCLER------------------------------------------------------------TTCDELSAYLSA 280 (457)
Q Consensus 261 ~iIf~~s~------------------------------------------------------------~~~~~l~~~L~~ 280 (457)
+|+|.|.+ ..++++++.|++
T Consensus 423 ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~ 502 (730)
T COG1198 423 VLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKR 502 (730)
T ss_pred EEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHH
Confidence 89998877 345888888887
Q ss_pred C--CCceEeecCCCCHH--HHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCC------------CHHHHHH
Q 012728 281 G--GISCAAYHAGLNDK--ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQ 344 (457)
Q Consensus 281 ~--g~~~~~~~~~~~~~--~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~------------s~~~~~Q 344 (457)
. +..+..+.++.+.. .-...++.|.+|+.+|||.|++++.|.|+|+++.|...|... ....+.|
T Consensus 503 ~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~Q 582 (730)
T COG1198 503 LFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQ 582 (730)
T ss_pred HCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHH
Confidence 6 67788888887543 356789999999999999999999999999999988766432 3456799
Q ss_pred HhcccCCCCCCceEEEEeccchHHHHHHHH
Q 012728 345 ESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (457)
Q Consensus 345 r~GRagR~g~~g~~~~~~~~~~~~~~~~i~ 374 (457)
-.|||||.+.+|.+++-....+-..++.+.
T Consensus 583 vaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 583 VAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred HHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 999999999999888765544433334333
No 101
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.4e-22 Score=205.80 Aligned_cols=317 Identities=20% Similarity=0.137 Sum_probs=209.0
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH----cCCce
Q 012728 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE----KGIAG 105 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~----~~~~~ 105 (457)
.+|.. +++.|.-.--.+.+| -+..++||.|||+++.+|++.. +..+.|++|+..||.+-.+.+.. +|+.+
T Consensus 78 ~lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv 154 (908)
T PRK13107 78 VFEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLFEFLGLTV 154 (908)
T ss_pred HhCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 34544 666776555445454 4999999999999999998754 66799999999999998877665 68888
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccccC--------
Q 012728 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSWG-------- 174 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~~~-------- 174 (457)
..+.+......+...+ .++|+++|+.-++-.-....+ ........+.++||||||.++-..
T Consensus 155 ~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIIS 226 (908)
T PRK13107 155 GINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIIS 226 (908)
T ss_pred EEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeec
Confidence 7776665543322211 278888888755321111111 011123558899999999985311
Q ss_pred ---CCCHHHHHHHHHHHHhCC--------------------CccEEE---------------------------------
Q 012728 175 ---HDFRPSYRKLSSLRNYLP--------------------DVPILA--------------------------------- 198 (457)
Q Consensus 175 ---~~~~~~~~~l~~~~~~~~--------------------~~~~v~--------------------------------- 198 (457)
..-...|..+..+...+. +.+.+.
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~ 306 (908)
T PRK13107 227 GAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISL 306 (908)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHH
Confidence 001122222222111110 111222
Q ss_pred --------------------------------------------------------------------------------
Q 012728 199 -------------------------------------------------------------------------------- 198 (457)
Q Consensus 199 -------------------------------------------------------------------------------- 198 (457)
T Consensus 307 ~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (908)
T PRK13107 307 LHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEK 386 (908)
T ss_pred HHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhH
Confidence
Q ss_pred ---EeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccH
Q 012728 199 ---LTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (457)
Q Consensus 199 ---lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~ 271 (457)
||+|...+. .++....+ -.++..+.++|.+..... .......|+..+.+.++. ..+.++||||+|++.+
T Consensus 387 L~GMTGTa~te~-~Ef~~iY~---l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~s 462 (908)
T PRK13107 387 LAGMTGTADTEA-FEFQHIYG---LDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQS 462 (908)
T ss_pred hhcccCCChHHH-HHHHHHhC---CCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHH
Confidence 222222211 11111111 112233333333322111 111224666666666553 3677899999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC-------------------------
Q 012728 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------------- 326 (457)
Q Consensus 272 ~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~------------------------- 326 (457)
+.++..|.+.|++...+|+++++.++..+.+.|+.|. |+|||++++||.||.=
T Consensus 463 e~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~ 540 (908)
T PRK13107 463 ELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKAD 540 (908)
T ss_pred HHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999 9999999999999861
Q ss_pred ------------ccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 327 ------------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 327 ------------v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
==+||-...+.|-.--.|-.|||||.|.+|.+..|++-+|
T Consensus 541 ~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 541 WQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1378888899999999999999999999999998887665
No 102
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.2e-22 Score=202.60 Aligned_cols=121 Identities=18% Similarity=0.162 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ceEEEEecccc
Q 012728 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFG 319 (457)
Q Consensus 243 ~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~ 319 (457)
..+...+.+.+.. ..+.++||.+.|.+..+.++..|.+.|++...+++.-...+-..+- ..|+ ..|.|||++++
T Consensus 551 ~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia---~AG~~g~VTIATNmAG 627 (970)
T PRK12899 551 REKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA---GAGKLGAVTVATNMAG 627 (970)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHH---hcCCCCcEEEeecccc
Confidence 3566666655544 2567899999999999999999999999988888864444333332 2343 56999999999
Q ss_pred ccCCCCC--------ccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 320 MGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 320 ~Gldip~--------v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
||.||.- ==+||....|.|..--.|-.||+||.|.+|.+..|++-+|
T Consensus 628 RGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlED 682 (970)
T PRK12899 628 RGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFED 682 (970)
T ss_pred CCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999852 2378889999999999999999999999999998887665
No 103
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.7e-23 Score=205.99 Aligned_cols=292 Identities=20% Similarity=0.269 Sum_probs=201.7
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
++..+-+++..|+ .|+..|.-....+..|+++-+.||||.|||.--++.++ .+++++++++||..|+.|.++++.+
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 3455566666677 59999999999999999999999999999954433332 3478999999999999999999998
Q ss_pred cCCc-----eeE-ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccC
Q 012728 101 KGIA-----GEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (457)
Q Consensus 101 ~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~ 174 (457)
+... ... .++......+......+.+++ .++ +++|..|+..-.+.....+++++++|++|.++-.+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdI------litTs~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDI------LITTSQFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccE------EEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 6522 222 455556667777777787776 555 45555565555444444569999999999986522
Q ss_pred CC---------CHH-----HH---------------HHHHHHHH---------hCCCccEEEEeccCChhH-H-HHHHHH
Q 012728 175 HD---------FRP-----SY---------------RKLSSLRN---------YLPDVPILALTATAAPKV-Q-KDVMES 214 (457)
Q Consensus 175 ~~---------~~~-----~~---------------~~l~~~~~---------~~~~~~~v~lSAT~~~~~-~-~~~~~~ 214 (457)
.. |.. ++ ..+.+... .....+++..|||..+.- . ..+...
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 11 100 00 01111111 112356899999987654 2 223333
Q ss_pred cCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCC---cccHHHHHHHHHhCCCceEeecCC
Q 012728 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (457)
Q Consensus 215 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s---~~~~~~l~~~L~~~g~~~~~~~~~ 291 (457)
++..- -.......|+.-..... .....+.++++....+ .|||++. ++.++++++.|+..|+++..+|++
T Consensus 300 lgFev---G~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~G-gLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEV---GSGGEGLRNIVDIYVES----ESLEKVVELVKKLGDG-GLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCcc---CccchhhhheeeeeccC----ccHHHHHHHHHHhCCC-eEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 33321 11223334444333333 3445566666666554 7999999 889999999999999999999994
Q ss_pred CCHHHHHHHHHHHhcCCceEEEEe----ccccccCCCCC-ccEEEEecCCC
Q 012728 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIPK 337 (457)
Q Consensus 292 ~~~~~r~~~~~~f~~g~~~vLvaT----~~~~~Gldip~-v~~Vi~~~~p~ 337 (457)
- ...++.|..|++++||.. .++-||+|+|. ++++|+++.|+
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk 417 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPK 417 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCc
Confidence 2 567999999999999885 57999999996 79999999993
No 104
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.91 E-value=4.7e-23 Score=183.49 Aligned_cols=182 Identities=21% Similarity=0.261 Sum_probs=133.2
Q ss_pred CCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC--------CCeEEEEcchH
Q 012728 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLI 88 (457)
Q Consensus 17 ~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~--------~~~~lvl~P~~ 88 (457)
|+++++++.+.+.+.+ +|+..|+++|.++++.+.+|+++++.+|||+|||++|+++++.. +++++|++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 6889999999999998 79999999999999999999999999999999999998887632 45899999999
Q ss_pred HHHHHHHHHHHHc----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEE
Q 012728 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVA 163 (457)
Q Consensus 89 ~L~~q~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lV 163 (457)
+|+.|+.+.+..+ ++....+.+..........+. .+.+++++||+.+.. .+ ........++++|
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~-----~l~~~~~~~~~l~~lI 148 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLD-----LLERGKLDLSKVKYLV 148 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHH-----HHHcCCCChhhCCEEE
Confidence 9999999988875 344444555444332221111 236677776654322 11 1123445689999
Q ss_pred EeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChhHHHHHHHHc
Q 012728 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 164 iDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
+||+|.+.+.+ +... +..+...++ +.+++++|||+++.....+...+
T Consensus 149 vDE~h~~~~~~--~~~~---~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 149 LDEADRMLDMG--FEDQ---IREILKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred EeChHHhhccC--hHHH---HHHHHHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 99999987655 4433 333444444 78999999999988766444433
No 105
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=7.3e-22 Score=201.16 Aligned_cols=130 Identities=22% Similarity=0.327 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012728 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
..+..+.+.++. ..+.+++|||+|+..++.+++.|.+.|+++..+||++++.+|..+++.|+.|++.|||||+.+++|
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 344455555543 356789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEec-----CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHH
Q 012728 322 IDRKDVRLVCHFN-----IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (457)
Q Consensus 322 ldip~v~~Vi~~~-----~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~ 374 (457)
+|+|++++||++| .|.+..+|+||+||+||. ..|.+++|++..+....+.+.
T Consensus 506 fDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 506 LDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred eeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHH
Confidence 9999999999998 799999999999999998 689999998876554444333
No 106
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.91 E-value=9.7e-23 Score=198.64 Aligned_cols=314 Identities=18% Similarity=0.202 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHH--HHhhhc----CCCeEEEEcchHHHHHHHHHHHHHcCCcee
Q 012728 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~--~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~ 106 (457)
.++++||.+.+.++. +|-+.|+...+|-|||+-. ++.-+. ..+..+|++|...| ..|.++++++.....
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 379999999998876 5678999999999999632 222222 27889999998777 578999999866655
Q ss_pred EecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHH
Q 012728 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (457)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~ 186 (457)
.+........+......+.... ..+++++|.|++... .+....-.|+++||||||++.... ..+..
T Consensus 245 ~~~~~Gdk~eR~~~~r~~~~~~-~fdV~iTsYEi~i~d------k~~lk~~~W~ylvIDEaHRiKN~~-------s~L~~ 310 (971)
T KOG0385|consen 245 VVVYHGDKEERAALRRDIMLPG-RFDVCITSYEIAIKD------KSFLKKFNWRYLVIDEAHRIKNEK-------SKLSK 310 (971)
T ss_pred eEEEeCCHHHHHHHHHHhhccC-CCceEeehHHHHHhh------HHHHhcCCceEEEechhhhhcchh-------hHHHH
Confidence 5555555556655555544332 477777777766432 223333459999999999998754 45666
Q ss_pred HHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC------CC--------------------------------
Q 012728 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN-------------------------------- 228 (457)
Q Consensus 187 ~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~------~~-------------------------------- 228 (457)
+++.+.....+++|+||-.+-..+++..++.--|.++... ++
T Consensus 311 ~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 311 ILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 6777776778999999877666666665554333322110 00
Q ss_pred --------------------------------------------------------CCceEEEEEE-eCc--------hh
Q 012728 229 --------------------------------------------------------RPNLFYEVRY-KDL--------LD 243 (457)
Q Consensus 229 --------------------------------------------------------~~~i~~~~~~-~~~--------~~ 243 (457)
.|.++.-..+ .+. ..
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nS 470 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNS 470 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcC
Confidence 0000000000 000 00
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC---ceEEEEeccc
Q 012728 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAF 318 (457)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~ 318 (457)
.|+..|..+|.. ..+.++|||..-.....-+.+++.-+++....+.|.++.++|...++.|.... .-.|++|.+.
T Consensus 471 GKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAG 550 (971)
T KOG0385|consen 471 GKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAG 550 (971)
T ss_pred cceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccc
Confidence 222233333332 25678999999888888899999889999999999999999999999998543 3468999999
Q ss_pred cccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE--eccc
Q 012728 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY--YGMD 365 (457)
Q Consensus 319 ~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~--~~~~ 365 (457)
+-|||+-.+++||.||..|+|..-+|...||.|-|+...+.+| ++.+
T Consensus 551 GLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 551 GLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred ccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 9999999999999999999999999999999999998766554 5544
No 107
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=2e-22 Score=206.28 Aligned_cols=302 Identities=18% Similarity=0.167 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc----CCCeEEEEcchHHHHHHHHHHHHH-cCCc----eeEecCC
Q 012728 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA----GEFLSST 111 (457)
Q Consensus 41 ~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~~~lvl~P~~~L~~q~~~~~~~-~~~~----~~~~~~~ 111 (457)
....+.+.++.+++-+++.+|||+|||...=...++ .++.+.+.-|.|--|...++++.. ++.+ +.+..-.
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRf 132 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRF 132 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEe
Confidence 455567777777888999999999999632122222 256888889998666666666654 3332 1111000
Q ss_pred CcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHH-HHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 012728 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (457)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~-l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~ 190 (457)
. +.. ...-++ .+.|.|.+.. +.....+..+++|||||||.=+-.. --.+.-+..+...
T Consensus 133 e----------~~~--s~~Tri------k~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~t---DilLgllk~~~~~ 191 (845)
T COG1643 133 E----------SKV--SPRTRI------KVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNT---DILLGLLKDLLAR 191 (845)
T ss_pred e----------ccC--CCCcee------EEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHH---HHHHHHHHHHHhh
Confidence 0 000 011222 5566665444 3556678889999999999843210 0112234444555
Q ss_pred CC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecC-CCCCceEEEEEE-eCc-hhhHHHHHHHHHHhcCCccEEEEeC
Q 012728 191 LP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYCL 266 (457)
Q Consensus 191 ~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~-~~~-~~~~~~~l~~~l~~~~~~~~iIf~~ 266 (457)
.+ +.++|.||||+..+.. ...++. -|++.... ...-.++|.... .+. ..+.+....+.......+.+|||.+
T Consensus 192 rr~DLKiIimSATld~~rf---s~~f~~-apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLp 267 (845)
T COG1643 192 RRDDLKLIIMSATLDAERF---SAYFGN-APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLP 267 (845)
T ss_pred cCCCceEEEEecccCHHHH---HHHcCC-CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECC
Confidence 55 6899999999988743 344432 33333322 222233332211 111 2223333333333345778999999
Q ss_pred CcccHHHHHHHHHh----CCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCC------
Q 012728 267 ERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP------ 336 (457)
Q Consensus 267 s~~~~~~l~~~L~~----~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p------ 336 (457)
...+.+.+++.|.+ ....+..+||.++.+++..+++.-..|+.+|++||++++.+|-||++++||.-+.-
T Consensus 268 G~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~ 347 (845)
T COG1643 268 GQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYD 347 (845)
T ss_pred cHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccc
Confidence 99999999999997 24678999999999999998877777877899999999999999999999965532
Q ss_pred ------------CCHHHHHHHhcccCCCCCCceEEEEeccchHH
Q 012728 337 ------------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (457)
Q Consensus 337 ------------~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~ 368 (457)
-|-.+.-||.|||||.+ +|.|+-+|+.++..
T Consensus 348 ~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 348 PRTGLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred cccCceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 37789999999999985 89999999875544
No 108
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=1.8e-22 Score=195.51 Aligned_cols=302 Identities=20% Similarity=0.224 Sum_probs=199.9
Q ss_pred HHHHHHHHcCCCEEEEcCCCchhhHH---HHHhh-hcCCCeEEEEcchHHHHHHHHHHHHH-----cCCceeEecCCCcH
Q 012728 44 LDAIQAVLSGRDCFCLMPTGGGKSMC---YQIPA-LAKPGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLSSTQTM 114 (457)
Q Consensus 44 ~~~i~~~~~~~~~lv~a~TGsGKT~~---~~l~~-l~~~~~~lvl~P~~~L~~q~~~~~~~-----~~~~~~~~~~~~~~ 114 (457)
.+.+..+.+++-+++.++||+|||.- |+.-+ ....+.+.+.-|.|--|...+++... +|..+....-.
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRF--- 133 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRF--- 133 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEe---
Confidence 34666666778899999999999952 22222 23356688888998766666655543 23322211100
Q ss_pred HHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCc
Q 012728 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194 (457)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~ 194 (457)
. .....+-++.+.|..++ +.++.....+.++++||+||||.-.-. ---.+--++.+....++.
T Consensus 134 -------e--d~ts~~TrikymTDG~L-----LRE~l~Dp~LskYsvIIlDEAHERsl~---TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 134 -------E--DSTSKDTRIKYMTDGML-----LREILKDPLLSKYSVIILDEAHERSLH---TDILLGLLKKILKKRPDL 196 (674)
T ss_pred -------c--ccCCCceeEEEecchHH-----HHHHhcCCccccccEEEEechhhhhhH---HHHHHHHHHHHHhcCCCc
Confidence 0 00111245555554433 344555666778999999999974210 001123355666666788
Q ss_pred cEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCC-ceEEEEE-EeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHH
Q 012728 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVR-YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (457)
Q Consensus 195 ~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~ 272 (457)
++|.+|||+..+... .+++. -+++....-.-| .+.|... ..+..+..+..+.++-...+.+-+|||....++.+
T Consensus 197 klIimSATlda~kfS---~yF~~-a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 197 KLIIMSATLDAEKFS---EYFNN-APILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred eEEEEeeeecHHHHH---HHhcC-CceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 999999999876544 33322 333333332222 2222221 12222344444555555567778999999999999
Q ss_pred HHHHHHHhC----CC----ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC---------
Q 012728 273 ELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--------- 335 (457)
Q Consensus 273 ~l~~~L~~~----g~----~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~--------- 335 (457)
.+++.|.+. +- -+..+||.++.+++.++++.--.|..+|+++|++++..+-||++.+||.-+.
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~ 352 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPR 352 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccc
Confidence 999999865 11 2468999999999999888877899999999999999999999999995442
Q ss_pred ---------CCCHHHHHHHhcccCCCCCCceEEEEeccchHHHH
Q 012728 336 ---------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (457)
Q Consensus 336 ---------p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~ 370 (457)
|-|..+-.||.|||||.| +|+|+-+|+.++.+.+
T Consensus 353 ~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~ 395 (674)
T KOG0922|consen 353 TGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKM 395 (674)
T ss_pred cCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhc
Confidence 448889999999999986 8999999998776543
No 109
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.89 E-value=2.8e-20 Score=191.12 Aligned_cols=118 Identities=25% Similarity=0.372 Sum_probs=106.4
Q ss_pred HHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCC
Q 012728 246 YADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (457)
Q Consensus 246 ~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 323 (457)
+..+.+.++. ..+.++||||+++..++.+++.|...|+++..+||++++.+|..+++.|+.|+..|+|||+.+++|+|
T Consensus 432 ~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfd 511 (652)
T PRK05298 432 VDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLD 511 (652)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCcc
Confidence 3444444433 24678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEecC-----CCCHHHHHHHhcccCCCCCCceEEEEecc
Q 012728 324 RKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 324 ip~v~~Vi~~~~-----p~s~~~~~Qr~GRagR~g~~g~~~~~~~~ 364 (457)
+|++++||++|. |.+..+|+||+||+||. ..|.+++|++.
T Consensus 512 lp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~ 556 (652)
T PRK05298 512 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADK 556 (652)
T ss_pred ccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecC
Confidence 999999999885 78999999999999996 68999999984
No 110
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.4e-21 Score=194.68 Aligned_cols=323 Identities=20% Similarity=0.213 Sum_probs=199.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh---h--cCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCc
Q 012728 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---L--AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~---l--~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 113 (457)
|..||.+.+...-.+++++++|||.+|||++.-..+ + ...+.+|+++|+++|++|.........-......+...
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl 591 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSL 591 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhh
Confidence 678999999999999999999999999997643322 2 23789999999999999987766553211111111111
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECCCc----ccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHH
Q 012728 114 MQVKTKIYEDLDSGKPSLRLLYVTPEL----TATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (457)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~i~~~t~~~----i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~ 189 (457)
.+. ....-.-...+++++++.|+. +.+|..... .-.+++++|+||+|.++....+ .-.+.+..
T Consensus 592 ~g~---ltqEYsinp~nCQVLITvPecleslLlspp~~q~-----~cerIRyiIfDEVH~iG~~ed~-----l~~Eqll~ 658 (1330)
T KOG0949|consen 592 LGD---LTQEYSINPWNCQVLITVPECLESLLLSPPHHQK-----FCERIRYIIFDEVHLIGNEEDG-----LLWEQLLL 658 (1330)
T ss_pred Hhh---hhHHhcCCchhceEEEEchHHHHHHhcCchhhhh-----hhhcceEEEechhhhccccccc-----hHHHHHHH
Confidence 111 111112224568999999984 334321111 1234889999999999764322 11122222
Q ss_pred hCCCccEEEEeccCChhHHHHHHHHcC-----CC-CCeEE--------------ecC-----------------------
Q 012728 190 YLPDVPILALTATAAPKVQKDVMESLC-----LQ-NPLVL--------------KSS----------------------- 226 (457)
Q Consensus 190 ~~~~~~~v~lSAT~~~~~~~~~~~~~~-----~~-~~~~~--------------~~~----------------------- 226 (457)
.-.++++++|||..+... +..|+. .. +...+ ...
T Consensus 659 -li~CP~L~LSATigN~~l--~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~ 735 (1330)
T KOG0949|consen 659 -LIPCPFLVLSATIGNPNL--FQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSL 735 (1330)
T ss_pred -hcCCCeeEEecccCCHHH--HHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchh
Confidence 236889999999877532 223322 00 00000 000
Q ss_pred -----CCCCceEEEEEEeCc--------------hh--------------------------------------------
Q 012728 227 -----FNRPNLFYEVRYKDL--------------LD-------------------------------------------- 243 (457)
Q Consensus 227 -----~~~~~i~~~~~~~~~--------------~~-------------------------------------------- 243 (457)
...++....+..... .+
T Consensus 736 ~~~~~s~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~ 815 (1330)
T KOG0949|consen 736 RELSESEDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQ 815 (1330)
T ss_pred hccccCCCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhh
Confidence 000011111100000 00
Q ss_pred --------------------hHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC----------------------
Q 012728 244 --------------------DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------- 281 (457)
Q Consensus 244 --------------------~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~---------------------- 281 (457)
.++-.+...|++...-++|+|--.+..|+.++..+.+.
T Consensus 816 ~k~Vnkqle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~ 895 (1330)
T KOG0949|consen 816 TKEVNKQLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAK 895 (1330)
T ss_pred hhhhhhHhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11122333344445567888877777776665433210
Q ss_pred ---------------C---------------------------------------------------CceEeecCCCCHH
Q 012728 282 ---------------G---------------------------------------------------ISCAAYHAGLNDK 295 (457)
Q Consensus 282 ---------------g---------------------------------------------------~~~~~~~~~~~~~ 295 (457)
+ -.+.++|++|...
T Consensus 896 ~a~~r~Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~ 975 (1330)
T KOG0949|consen 896 RARDREKTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRK 975 (1330)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchH
Confidence 0 0457899999999
Q ss_pred HHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC-CCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHH
Q 012728 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (457)
Q Consensus 296 ~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~-p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~ 374 (457)
.|..+.-.|+.|...||+||..++-|||+|.-++|+-.|. -.++-.|.|++|||||.|-...+.+.+..-....+++++
T Consensus 976 yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDsLQL~plny~QmaGRAGRRGFD~lGnV~FmgiP~~kv~rLl 1055 (1330)
T KOG0949|consen 976 YRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDSLQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIPRQKVQRLL 1055 (1330)
T ss_pred HHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccccccCchhHHhhhccccccccccccceEEEeCcHHHHHHHH
Confidence 9999999999999999999999999999996666665553 458999999999999999766665555555556666666
Q ss_pred Hhc
Q 012728 375 SKN 377 (457)
Q Consensus 375 ~~~ 377 (457)
...
T Consensus 1056 ts~ 1058 (1330)
T KOG0949|consen 1056 TSL 1058 (1330)
T ss_pred HHh
Confidence 544
No 111
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=8.1e-21 Score=193.83 Aligned_cols=121 Identities=24% Similarity=0.279 Sum_probs=109.6
Q ss_pred hHHHHHHHHHHhc--CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012728 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
+|+..+.+.+... .+.++||||+|++.++.++..|.+.|++...+|+ .+.+|+..+..|+.+...|+|||++++||
T Consensus 582 eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRG 659 (1025)
T PRK12900 582 EKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRG 659 (1025)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCC
Confidence 5777788877553 6789999999999999999999999999999997 68899999999999999999999999999
Q ss_pred CCCC---Ccc-----EEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 322 IDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 322 ldip---~v~-----~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
+||+ .|. +||.++.|.|...|.|++||+||.|.+|.+.+|++.+|
T Consensus 660 tDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 660 TDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 9999 554 45899999999999999999999999999999998765
No 112
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=4.3e-21 Score=188.08 Aligned_cols=310 Identities=17% Similarity=0.113 Sum_probs=213.3
Q ss_pred CCCHHHHHHHHHHHc----CCCEEEEcCCCchhhH--HHHHhhhcC----CCeEEEEcchHHHHHHHHHHHHHcCCcee-
Q 012728 38 QFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~--~~~l~~l~~----~~~~lvl~P~~~L~~q~~~~~~~~~~~~~- 106 (457)
.+.|||++++.++.+ +...|+.-.+|-|||. +..++++.+ .+++|||||. .++.||.++|........
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~rv 283 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFRV 283 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceEE
Confidence 588999999999873 4567888899999994 333555544 4789999996 677899999999765543
Q ss_pred -EecCCCcHHHH-----HHHHHH--hhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCH
Q 012728 107 -FLSSTQTMQVK-----TKIYED--LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (457)
Q Consensus 107 -~~~~~~~~~~~-----~~~~~~--~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~ 178 (457)
++++....... ...+.. ......+..++++|.+.+ ...........|+++|+||.|.+-+.+
T Consensus 284 ~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~------r~~~d~l~~~~W~y~ILDEGH~IrNpn---- 353 (923)
T KOG0387|consen 284 FILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGF------RIQGDDLLGILWDYVILDEGHRIRNPN---- 353 (923)
T ss_pred EEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhh------cccCcccccccccEEEecCcccccCCc----
Confidence 34444332110 011111 011112233444444433 222333444559999999999997655
Q ss_pred HHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEec----------------CC---------------
Q 012728 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS----------------SF--------------- 227 (457)
Q Consensus 179 ~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~----------------~~--------------- 227 (457)
.++...+..++..+.+.+|+||-.+-..+++..+....|-.+.. ..
T Consensus 354 ---s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 ---SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred ---cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 55666677778889999999998776666665544332221100 00
Q ss_pred ---------------------CCCceEEEEEEe-----------------------------------------------
Q 012728 228 ---------------------NRPNLFYEVRYK----------------------------------------------- 239 (457)
Q Consensus 228 ---------------------~~~~i~~~~~~~----------------------------------------------- 239 (457)
..|.-...|...
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 000000000000
Q ss_pred ----------C-----chhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHH-hCCCceEeecCCCCHHHHHHHH
Q 012728 240 ----------D-----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVL 301 (457)
Q Consensus 240 ----------~-----~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~-~~g~~~~~~~~~~~~~~r~~~~ 301 (457)
+ ....|...+..+++. ..+.+++.|..++....-+...|. ..|+++..+.|..+...|..++
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 0 001355556666654 356689999999999999999999 5799999999999999999999
Q ss_pred HHHhcCC-ce-EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE
Q 012728 302 DDWISSR-KQ-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 302 ~~f~~g~-~~-vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~ 361 (457)
++|.++. .. .|++|.+.+-|+|+-.++-||.||+.|||++-.|..-||.|-|+...+++|
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 9999765 33 589999999999999999999999999999999999999999998766655
No 113
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=4.1e-20 Score=174.22 Aligned_cols=163 Identities=21% Similarity=0.319 Sum_probs=123.0
Q ss_pred ccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccH
Q 012728 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (457)
Q Consensus 194 ~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~ 271 (457)
.|+|++||||.+.....-.. ...+.++-....-.|.+ .+.+.. ..++.|...++. ..+.+++|-+-|++.|
T Consensus 387 ~q~i~VSATPg~~E~e~s~~--~vveQiIRPTGLlDP~i--evRp~~---~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQSGG--NVVEQIIRPTGLLDPEI--EVRPTK---GQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhccC--ceeEEeecCCCCCCCce--eeecCC---CcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 47999999998875431110 00111111112222222 233221 233444443332 3568999999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC-----CCCHHHHHHHh
Q 012728 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQES 346 (457)
Q Consensus 272 ~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~-----p~s~~~~~Qr~ 346 (457)
+.|.++|.+.|+++.++|++.+.-+|.+++..++.|.++|||.-+.+-+|+|+|.|.+|..+|. ..|..+.+|-+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999985 56899999999
Q ss_pred cccCCCCCCceEEEEecc
Q 012728 347 GRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 347 GRagR~g~~g~~~~~~~~ 364 (457)
|||+|. -.|++++|.+.
T Consensus 540 GRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 540 GRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHhhc-cCCeEEEEchh
Confidence 999997 46888888764
No 114
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.87 E-value=9.7e-20 Score=187.85 Aligned_cols=296 Identities=17% Similarity=0.139 Sum_probs=175.6
Q ss_pred CCHHHHHHHHHHH----c------CCCEEEEcCCCchhhHHHHHhhh-----cCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 39 FRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 39 ~~~~Q~~~i~~~~----~------~~~~lv~a~TGsGKT~~~~l~~l-----~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
++++|..++..+. + .+..++++|||||||++.+..+. ...+++|||+|+.+|..|+.+.+..++.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~ 318 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQK 318 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCC
Confidence 6789999998764 2 24799999999999987654432 2367899999999999999999999765
Q ss_pred ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCc-cEEEEeccccccccCCCCHHHHH
Q 012728 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL-NLVAIDEAHCISSWGHDFRPSYR 182 (457)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l-~~lViDEah~~~~~~~~~~~~~~ 182 (457)
.... ...+.. .....+.. .+..++++|...+... ............- .+||+||||+... | .
T Consensus 319 ~~~~--~~~s~~---~L~~~l~~--~~~~iivtTiQk~~~~--~~~~~~~~~~~~~~~lvIvDEaHrs~~-~-------~ 381 (667)
T TIGR00348 319 DCAE--RIESIA---ELKRLLEK--DDGGIIITTIQKFDKK--LKEEEEKFPVDRKEVVVIFDEAHRSQY-G-------E 381 (667)
T ss_pred CCCc--ccCCHH---HHHHHHhC--CCCCEEEEEhHHhhhh--HhhhhhccCCCCCCEEEEEEcCccccc-h-------H
Confidence 3111 111111 11122222 2356777766655431 1111111111111 2899999998643 1 1
Q ss_pred HHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCC-CCCeEEecCCC-------CCceEEEEEEe-C-c----hh-----
Q 012728 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFN-------RPNLFYEVRYK-D-L----LD----- 243 (457)
Q Consensus 183 ~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~i~~~~~~~-~-~----~~----- 243 (457)
-...+...+|+..+++|||||-..........++. ....+...+.. ...+.|..... . . .+
T Consensus 382 ~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 382 LAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 12335567899999999999964321111122221 11112111100 00111111100 0 0 00
Q ss_pred -----------------------------------hHHHHHHHHHHh---cCCccEEEEeCCcccHHHHHHHHHhC----
Q 012728 244 -----------------------------------DAYADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG---- 281 (457)
Q Consensus 244 -----------------------------------~~~~~l~~~l~~---~~~~~~iIf~~s~~~~~~l~~~L~~~---- 281 (457)
.....+.+.... ..+.+++|||.++.+|..+++.|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 000011111111 12478999999999999999988664
Q ss_pred -CCceEeecCCCCHH---------------------HHHHHHHHHhc-CCceEEEEeccccccCCCCCccEEEEecCCCC
Q 012728 282 -GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (457)
Q Consensus 282 -g~~~~~~~~~~~~~---------------------~r~~~~~~f~~-g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s 338 (457)
+.....++++.+.. ....++++|++ +..+|||+++++.+|+|.|.+..++..-+..+
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~ 621 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY 621 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc
Confidence 23445555543222 22467889976 68899999999999999999999988876565
Q ss_pred HHHHHHHhcccCCC
Q 012728 339 MEAFYQESGRAGRD 352 (457)
Q Consensus 339 ~~~~~Qr~GRagR~ 352 (457)
. .++|.+||+.|.
T Consensus 622 h-~LlQai~R~nR~ 634 (667)
T TIGR00348 622 H-GLLQAIARTNRI 634 (667)
T ss_pred c-HHHHHHHHhccc
Confidence 4 589999999993
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=3.4e-19 Score=189.46 Aligned_cols=180 Identities=14% Similarity=0.118 Sum_probs=113.8
Q ss_pred cEEEEeccCChh-HHHHHHHHcCCCCCeEE---ecCCC-CCceEEEEEE--e----CchhhHHHH----HHHHHHhcCCc
Q 012728 195 PILALTATAAPK-VQKDVMESLCLQNPLVL---KSSFN-RPNLFYEVRY--K----DLLDDAYAD----LCSVLKANGDT 259 (457)
Q Consensus 195 ~~v~lSAT~~~~-~~~~~~~~~~~~~~~~~---~~~~~-~~~i~~~~~~--~----~~~~~~~~~----l~~~l~~~~~~ 259 (457)
.+|++|||++.. ....+.+.+|+.+.... .++++ ..+....+.. . ...+..... +.+++.. .++
T Consensus 597 ~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~-~~g 675 (850)
T TIGR01407 597 SLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAI-TSP 675 (850)
T ss_pred eEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHh-cCC
Confidence 478999999743 34566778888654322 22333 1222222111 0 011222223 3333333 456
Q ss_pred cEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCcc--EEEEe
Q 012728 260 CAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCHF 333 (457)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~--~Vi~~ 333 (457)
+++||++|....+.+++.|... ++. .+..+.. ..|..++++|++|+..||++|+.+.+|||+|+.. .||..
T Consensus 676 ~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~ 752 (850)
T TIGR01407 676 KILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIP 752 (850)
T ss_pred CEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEe
Confidence 8999999999999999999752 333 3333333 5788899999999999999999999999999865 56777
Q ss_pred cCCC------------------------------CHHHHHHHhcccCCCCCCceEEEEeccc--hHHHHHHHHHhcc
Q 012728 334 NIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (457)
Q Consensus 334 ~~p~------------------------------s~~~~~Qr~GRagR~g~~g~~~~~~~~~--~~~~~~~i~~~~~ 378 (457)
.+|. ....+.|.+||.-|..+..-++++++.. ...+-+.+.+...
T Consensus 753 ~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 753 RLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 7663 1234589999999987554455555554 2333345555443
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.3e-18 Score=172.99 Aligned_cols=321 Identities=19% Similarity=0.174 Sum_probs=215.5
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----
Q 012728 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (457)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~---- 100 (457)
++....+|.. +++.|.-..-.++.|+ +..+.||.|||+++.+|+.. .+..+-|++|+..||.+-++.+..
T Consensus 69 Ea~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 69 EAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred HHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 3344456665 8889999888888875 78999999999999988764 378899999999999998887765
Q ss_pred cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH---hhhhcCCccEEEEecccccccc----
Q 012728 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW---- 173 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~---~~~~~~~l~~lViDEah~~~~~---- 173 (457)
+|+.+..+.+......+...+. ++|.++|..-++-.-....+. .......+.+.||||+|.++-.
T Consensus 146 LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArt 217 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALV 217 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccC
Confidence 6888888887777665555442 678888876544322222221 1223345789999999988520
Q ss_pred -----C-CCCHHHHHHHHHHHHhCC---------Cc--------------------------------------------
Q 012728 174 -----G-HDFRPSYRKLSSLRNYLP---------DV-------------------------------------------- 194 (457)
Q Consensus 174 -----~-~~~~~~~~~l~~~~~~~~---------~~-------------------------------------------- 194 (457)
| .+-...|..+..+...+. +.
T Consensus 218 PLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l 297 (764)
T PRK12326 218 PLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHAL 297 (764)
T ss_pred ceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHH
Confidence 0 000112222222222111 01
Q ss_pred ------------------------------------------------------------------cEEEEeccCChhHH
Q 012728 195 ------------------------------------------------------------------PILALTATAAPKVQ 208 (457)
Q Consensus 195 ------------------------------------------------------------------~~v~lSAT~~~~~~ 208 (457)
++.+||+|.....
T Consensus 298 ~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~- 376 (764)
T PRK12326 298 LQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAG- 376 (764)
T ss_pred HhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHH-
Confidence 1445555554332
Q ss_pred HHHHHHcCCCCCeEEecCCCCCceEEEE--EEeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCc
Q 012728 209 KDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (457)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (457)
.++.+..++. ++..+.++|.+.... .......+|+..+.+.+.. ..+.++||.+.|.+.++.++..|.+.|++
T Consensus 377 ~Ef~~iY~l~---Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~ 453 (764)
T PRK12326 377 EQLRQFYDLG---VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVP 453 (764)
T ss_pred HHHHHHhCCc---EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCc
Confidence 2333333332 334455555543321 1112234677776666544 36789999999999999999999999999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCC-ceEEEEeccccccCCCCC---------------ccEEEEecCCCCHHHHHHHhcc
Q 012728 285 CAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD---------------VRLVCHFNIPKSMEAFYQESGR 348 (457)
Q Consensus 285 ~~~~~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip~---------------v~~Vi~~~~p~s~~~~~Qr~GR 348 (457)
...+++.-..++-..+- +.|+ ..|-|||++++||.||.= ==+||-...+.|..--.|-.||
T Consensus 454 h~vLNAk~~~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGR 530 (764)
T PRK12326 454 AVVLNAKNDAEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGR 530 (764)
T ss_pred ceeeccCchHhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcc
Confidence 99999875544432222 2343 459999999999999862 2379999999999999999999
Q ss_pred cCCCCCCceEEEEeccch
Q 012728 349 AGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 349 agR~g~~g~~~~~~~~~~ 366 (457)
+||.|.+|.+..|++-+|
T Consensus 531 aGRQGDpGss~f~lSleD 548 (764)
T PRK12326 531 AGRQGDPGSSVFFVSLED 548 (764)
T ss_pred cccCCCCCceeEEEEcch
Confidence 999999999998887665
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.86 E-value=1.9e-21 Score=192.77 Aligned_cols=325 Identities=19% Similarity=0.202 Sum_probs=197.8
Q ss_pred ccccccccccccCCCCChHHHHH-HHHHHh--cCCCCCCHHHHHHHHHHH----cC-CCEEEEcCCCchhhHHHH--Hhh
Q 012728 5 PLAMQSTSQTQKNKPLHEKEALV-KLLRWH--FGHAQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IPA 74 (457)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~--~g~~~~~~~Q~~~i~~~~----~~-~~~lv~a~TGsGKT~~~~--l~~ 74 (457)
|.+++.+.+-..|+.+.-..... ..+... ++-..+|.||..||..+. +| +.+++++.||+|||.+++ +-.
T Consensus 129 pr~~e~f~~~~~le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~r 208 (875)
T COG4096 129 PRPVEGFYSQEELEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDR 208 (875)
T ss_pred CcchhhccCHHHHHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHH
Confidence 45555555555555554444333 112111 123468999999997655 45 359999999999996653 333
Q ss_pred hcC---CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHH-HH
Q 012728 75 LAK---PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KL 150 (457)
Q Consensus 75 l~~---~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~-~l 150 (457)
|.+ .+++|+|+-+++|+.|.+..+.++-......+..... .+..+.++.++|...+.....-. .-
T Consensus 209 L~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~~~~n~i~~~-----------~~~~s~~i~lsTyqt~~~~~~~~~~~ 277 (875)
T COG4096 209 LIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFGTKMNKIEDK-----------KGDTSSEIYLSTYQTMTGRIEQKEDE 277 (875)
T ss_pred HHhcchhheeeEEechHHHHHHHHHHHHHhCCCccceeeeecc-----------cCCcceeEEEeehHHHHhhhhccccc
Confidence 333 7899999999999999998888864443332222111 11124678877766554322111 11
Q ss_pred HhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHc-CCC-----------
Q 012728 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL-CLQ----------- 218 (457)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~-~~~----------- 218 (457)
......+.+++|||||||+-. |..-+.+..++... .+++||||.......-...+ +.+
T Consensus 278 ~~~f~~g~FDlIvIDEaHRgi---------~~~~~~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~ 347 (875)
T COG4096 278 YRRFGPGFFDLIVIDEAHRGI---------YSEWSSILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVE 347 (875)
T ss_pred cccCCCCceeEEEechhhhhH---------HhhhHHHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHhh
Confidence 223345568999999999742 23334555555333 44559998875544333433 111
Q ss_pred -------CCeEEecCCCCCceEEEEE---------------------E-------eCchhhHHHHHHHHHHh--cC--Cc
Q 012728 219 -------NPLVLKSSFNRPNLFYEVR---------------------Y-------KDLLDDAYADLCSVLKA--NG--DT 259 (457)
Q Consensus 219 -------~~~~~~~~~~~~~i~~~~~---------------------~-------~~~~~~~~~~l~~~l~~--~~--~~ 259 (457)
+.+.+.....+..+.+.-. . ....+.....+.+.++. .+ .+
T Consensus 348 DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~ 427 (875)
T COG4096 348 DGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIG 427 (875)
T ss_pred ccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccC
Confidence 0111111111111110000 0 00001223345555655 22 46
Q ss_pred cEEEEeCCcccHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhc--CCceEEEEeccccccCCCCCccEEEE
Q 012728 260 CAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCH 332 (457)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldip~v~~Vi~ 332 (457)
++||||.+..+|+.+.+.|... |--+..+.++-... ...+..|.. .-.+|.|+.+++..|||+|.|..++.
T Consensus 428 KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~--q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF 505 (875)
T COG4096 428 KTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQA--QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF 505 (875)
T ss_pred ceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhh--HHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee
Confidence 8999999999999999999875 23355666654332 344566654 34669999999999999999999999
Q ss_pred ecCCCCHHHHHHHhcccCCC
Q 012728 333 FNIPKSMEAFYQESGRAGRD 352 (457)
Q Consensus 333 ~~~p~s~~~~~Qr~GRagR~ 352 (457)
+..-.|...|.|++||+-|.
T Consensus 506 ~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 506 DRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhhhhHHHHHHHhcCcccc
Confidence 99999999999999999995
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.86 E-value=1.4e-20 Score=162.35 Aligned_cols=155 Identities=30% Similarity=0.419 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHHHHHHHHHHHHcCC----ceeEecC
Q 012728 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSS 110 (457)
Q Consensus 40 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L~~q~~~~~~~~~~----~~~~~~~ 110 (457)
||+|.++++.+.+|+++++.||||+|||++++++++.. ..++++++|+++|+.|+.+.+..++. ....+..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999888642 34999999999999999999988544 4455555
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEEeccccccccCCCCHHHHHHHHHHH
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~ 188 (457)
..........+ + .+ ..+++++||+. +..+.+. .....+++||+||+|.+..++ ++..+..+....
T Consensus 81 ~~~~~~~~~~~--~-~~--~~~ilv~T~~~------l~~~~~~~~~~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~ 147 (169)
T PF00270_consen 81 GQSISEDQREV--L-SN--QADILVTTPEQ------LLDLISNGKINISRLSLIVIDEAHHLSDET--FRAMLKSILRRL 147 (169)
T ss_dssp TSCHHHHHHHH--H-HT--TSSEEEEEHHH------HHHHHHTTSSTGTTESEEEEETHHHHHHTT--HHHHHHHHHHHS
T ss_pred ccccccccccc--c-cc--cccccccCcch------hhccccccccccccceeeccCccccccccc--HHHHHHHHHHHh
Confidence 54433111111 1 11 25666655554 4344322 234458999999999998864 666666665555
Q ss_pred HhCCCccEEEEeccCChhH
Q 012728 189 NYLPDVPILALTATAAPKV 207 (457)
Q Consensus 189 ~~~~~~~~v~lSAT~~~~~ 207 (457)
...++.+++++|||+++.+
T Consensus 148 ~~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 148 KRFKNIQIILLSATLPSNV 166 (169)
T ss_dssp HTTTTSEEEEEESSSTHHH
T ss_pred cCCCCCcEEEEeeCCChhH
Confidence 5556789999999999443
No 119
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=7e-20 Score=176.15 Aligned_cols=315 Identities=17% Similarity=0.165 Sum_probs=205.8
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh------cC-CCeEEEEcchHHHHHHHHHHHH
Q 012728 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AK-PGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 27 ~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l------~~-~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
...+++....-..+++-.+.+.++.+++-+++.+.||||||. ++|-. .. +.++-+-.|.|.-|...+.+..
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHH
Confidence 334444334445677888899999888889999999999996 34432 22 4447888899988877776655
Q ss_pred H-cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchh-HHHHHhhhhcCCccEEEEeccccccccCCCC
Q 012728 100 E-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDF 177 (457)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~-~~~l~~~~~~~~l~~lViDEah~~~~~~~~~ 177 (457)
. +|.+...-.+-. ..+.+..+. .-.+ ...|.|. +..+..-..+..++++||||||.-.- .-
T Consensus 332 ~EMgvkLG~eVGYs------IRFEdcTSe--kTvl------KYMTDGmLlREfL~epdLasYSViiiDEAHERTL---~T 394 (902)
T KOG0923|consen 332 EEMGVKLGHEVGYS------IRFEDCTSE--KTVL------KYMTDGMLLREFLSEPDLASYSVIIVDEAHERTL---HT 394 (902)
T ss_pred HHhCcccccccceE------EEeccccCc--ceee------eeecchhHHHHHhccccccceeEEEeehhhhhhh---hh
Confidence 4 433221000000 000000000 0122 3345553 34456666777899999999997421 01
Q ss_pred HHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeC---chhhHHHHHHHHHH
Q 012728 178 RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD---LLDDAYADLCSVLK 254 (457)
Q Consensus 178 ~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~l~~~l~ 254 (457)
--.+..+..+....|+.++++.|||+..+-.. .+++ .-|+ +..+-.|-.+...+...+ ..+..+..+.++.-
T Consensus 395 DILfgLvKDIar~RpdLKllIsSAT~DAekFS---~fFD-dapI-F~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~ 469 (902)
T KOG0923|consen 395 DILFGLVKDIARFRPDLKLLISSATMDAEKFS---AFFD-DAPI-FRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHL 469 (902)
T ss_pred hHHHHHHHHHHhhCCcceEEeeccccCHHHHH---Hhcc-CCcE-EeccCcccceeeecccCCchhHHHHHHhhheeeEe
Confidence 11234466677777899999999999877433 3332 2233 333323323322222222 22223333333333
Q ss_pred hcCCccEEEEeCCcccHHHHHHHHHhC----C-----CceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Q 012728 255 ANGDTCAIVYCLERTTCDELSAYLSAG----G-----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (457)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~----g-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip 325 (457)
..+.+-+|||....+..+...+.|+.. | +-+..+|++++.+.+..+++.--.|..+|++||++++..+.|+
T Consensus 470 tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTId 549 (902)
T KOG0923|consen 470 TQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTID 549 (902)
T ss_pred ccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeec
Confidence 456678999999988888777777642 3 4578999999999999999888899999999999999999999
Q ss_pred CccEEEEecC------------------CCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 326 DVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 326 ~v~~Vi~~~~------------------p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
++.+||.-+. |-|..+-.||.|||||.| +|+|+-+|+...
T Consensus 550 gI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~a 607 (902)
T KOG0923|consen 550 GIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAWA 607 (902)
T ss_pred CeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechhh
Confidence 9999996543 347788899999999997 899999998543
No 120
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.85 E-value=1.9e-19 Score=180.84 Aligned_cols=325 Identities=17% Similarity=0.083 Sum_probs=200.7
Q ss_pred CCCHHHHHHHHHHHcC---------C-CEEEEcCCCchhhHHH---HHhhhcC--C-----CeEEEEcchHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSG---------R-DCFCLMPTGGGKSMCY---QIPALAK--P-----GIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~---------~-~~lv~a~TGsGKT~~~---~l~~l~~--~-----~~~lvl~P~~~L~~q~~~~ 97 (457)
.++|+|++.+..+.++ - ..|+.-.+|+|||+-. +...+.. . .+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 5899999999988642 1 2455558999999643 2333333 3 679999995 888999999
Q ss_pred HHHcCCc----eeEecCCCcH-HHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 98 LKEKGIA----GEFLSSTQTM-QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 98 ~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
|.+.... ...+.+.... -.....+... .--.+.++..+.+..-.....+......+++||+||.|++-+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~------~~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFL------GYKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHh------hhhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccc
Confidence 9985442 1111222111 0000000001 011133344444544444444444566689999999999854
Q ss_pred cCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCC------------------------
Q 012728 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN------------------------ 228 (457)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 228 (457)
.. ..+...+....-.+.|++|+||-.+...++...+++.+|.++.....
T Consensus 391 ~~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~ 463 (776)
T KOG0390|consen 391 SD-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRER 463 (776)
T ss_pred hh-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhh
Confidence 22 33444444555677899999999888888888888776665421100
Q ss_pred --------------------------CCceEEEEE-EeCch--h------------------------------------
Q 012728 229 --------------------------RPNLFYEVR-YKDLL--D------------------------------------ 243 (457)
Q Consensus 229 --------------------------~~~i~~~~~-~~~~~--~------------------------------------ 243 (457)
.|..+..+. ..... .
T Consensus 464 ~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~ 543 (776)
T KOG0390|consen 464 EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLL 543 (776)
T ss_pred HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhh
Confidence 000000010 00000 0
Q ss_pred ----------------------------------hHHHHHHHHH---HhcCCccEEEEeCCcccHHHHHHHHHhCCCceE
Q 012728 244 ----------------------------------DAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (457)
Q Consensus 244 ----------------------------------~~~~~l~~~l---~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~ 286 (457)
.++..|..++ ++....++.+..|.+...+.+...++-+|+.+.
T Consensus 544 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~ 623 (776)
T KOG0390|consen 544 LLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVL 623 (776)
T ss_pred cccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEE
Confidence 1111111111 111112233333444445555555556699999
Q ss_pred eecCCCCHHHHHHHHHHHhcCC---ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE--
Q 012728 287 AYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY-- 361 (457)
Q Consensus 287 ~~~~~~~~~~r~~~~~~f~~g~---~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~-- 361 (457)
.+||.++.++|+.+++.|.+.. .-.|.+|.+.+.||++=+.+.||.||+.|||+.-.|.++||-|+||.-.|++|
T Consensus 624 rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 624 RLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred EEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999999999999643 33678899999999999999999999999999999999999999998877765
Q ss_pred eccc--hHHHHHHHHHh
Q 012728 362 YGMD--DRRRMEFILSK 376 (457)
Q Consensus 362 ~~~~--~~~~~~~i~~~ 376 (457)
+... |.+.+.+...+
T Consensus 704 latGtiEEk~~qrq~~K 720 (776)
T KOG0390|consen 704 LATGTIEEKIYQRQTHK 720 (776)
T ss_pred ecCCCchHHHHHHHHHh
Confidence 3332 44555444433
No 121
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.85 E-value=8e-20 Score=179.07 Aligned_cols=321 Identities=19% Similarity=0.180 Sum_probs=228.3
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHH--HHHhhhc---CCCeEEEEcchHHHHHHHHHHHHHcCCce
Q 012728 35 GHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~--~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~~~~~~ 105 (457)
|+. +.+||.-.+.++. ++-+.|+.-..|-|||.- +.++.|. ..+.-|||||...| +.|.+++.++....
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL 474 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce
Confidence 444 8899999998875 445778889999999942 2233333 27789999998666 67999999998887
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHH
Q 012728 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~ 185 (457)
.+.....+..++..+...+.....+++++++|..++++..--.. .....+++++|+||+|.+.+.+. .+..
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRs---flk~~~~n~viyDEgHmLKN~~S------eRy~ 545 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRS---FLKNQKFNYVIYDEGHMLKNRTS------ERYK 545 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHH---HHHhccccEEEecchhhhhccch------HHHH
Confidence 77777777788888888888888899999999998876432222 22334589999999999987664 3333
Q ss_pred HHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC--------------------------------------
Q 012728 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------------------------------------- 227 (457)
Q Consensus 186 ~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 227 (457)
.+.. .+.-..+++|+||-.+-..+++..+..--|.++..+.
T Consensus 546 ~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 546 HLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred Hhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 3333 2345678999998655444443332221111100000
Q ss_pred ----------CCCceEEEEEEeCc--h-----------------------------------------------------
Q 012728 228 ----------NRPNLFYEVRYKDL--L----------------------------------------------------- 242 (457)
Q Consensus 228 ----------~~~~i~~~~~~~~~--~----------------------------------------------------- 242 (457)
+.|.-...+..... .
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 00000000000000 0
Q ss_pred -------------------------------------------------------hhHHHHHHHHHHh--cCCccEEEEe
Q 012728 243 -------------------------------------------------------DDAYADLCSVLKA--NGDTCAIVYC 265 (457)
Q Consensus 243 -------------------------------------------------------~~~~~~l~~~l~~--~~~~~~iIf~ 265 (457)
..|+..|..+|.+ ..+.+++||.
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 0344555555544 2568999999
Q ss_pred CCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ce-EEEEeccccccCCCCCccEEEEecCCCCHHHHH
Q 012728 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (457)
Q Consensus 266 ~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~ 343 (457)
.......-|...|.-.++....+.|...-.+|+.++..|...+ +. .|++|.+.+-|||+-.+++||.+|...+|..-.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999999999999999999999999999999998653 43 589999999999999999999999999999999
Q ss_pred HHhcccCCCCCCce--EEEEeccchH
Q 012728 344 QESGRAGRDQLPSK--SLLYYGMDDR 367 (457)
Q Consensus 344 Qr~GRagR~g~~g~--~~~~~~~~~~ 367 (457)
|.-.||.|.|+... ++-+++....
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999998654 4555666543
No 122
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.84 E-value=1e-19 Score=185.88 Aligned_cols=315 Identities=20% Similarity=0.210 Sum_probs=216.7
Q ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCchhhH---HHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHH-cCCce
Q 012728 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQ---IPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAG 105 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~---~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~ 105 (457)
.++|+||.+.+.+++ +++++|+.-..|-|||. +|+ .-...-.+..||++|...+.. |.+.+.. ...++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~-W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITA-WEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHH-HHHHHHHHhhhce
Confidence 579999999998876 67899999999999994 333 223334788999999877655 4554444 35566
Q ss_pred eEecCCCcHHHHHHHHHHhhcC---CCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHH
Q 012728 106 EFLSSTQTMQVKTKIYEDLDSG---KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~ 182 (457)
..+.+..........+...... .-.++++++|.+++...- .....-.|.+++|||||++.+.. .
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk------~~L~~i~w~~~~vDeahrLkN~~-------~ 514 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK------AELSKIPWRYLLVDEAHRLKNDE-------S 514 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH------hhhccCCcceeeecHHhhcCchH-------H
Confidence 6666665544444433333222 224677777777664321 11112238899999999997533 2
Q ss_pred HHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC------------------------------------
Q 012728 183 KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------------------------------------ 226 (457)
Q Consensus 183 ~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------ 226 (457)
.+-..+..+.-...+++|+||-.+..++++..+....|..+...
T Consensus 515 ~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 515 KLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 23333445555668999999988888888877755444322110
Q ss_pred --CCCCceEEEEEEeCchh--------------------------------------------------hHH------HH
Q 012728 227 --FNRPNLFYEVRYKDLLD--------------------------------------------------DAY------AD 248 (457)
Q Consensus 227 --~~~~~i~~~~~~~~~~~--------------------------------------------------~~~------~~ 248 (457)
.....-.+.|....... ..+ ..
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 00001111111110000 011 12
Q ss_pred HHHHHHh---------------cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc---CCce
Q 012728 249 LCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQ 310 (457)
Q Consensus 249 l~~~l~~---------------~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~---g~~~ 310 (457)
|..++.. ..+.++|||..-+....-|+++|..++++.-.+.|.+..+-|++.++.|.. ...-
T Consensus 675 L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFv 754 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFV 754 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceE
Confidence 2222222 256789999999999999999999999999999999999999999999984 4566
Q ss_pred EEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEE--EEeccc
Q 012728 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL--LYYGMD 365 (457)
Q Consensus 311 vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~--~~~~~~ 365 (457)
.|+||.+.+-|||+-.++.||+||..|||..-+|...||.|-|+...+- -+++.+
T Consensus 755 FLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 755 FLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred EEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999987654 456654
No 123
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=1.1e-19 Score=175.26 Aligned_cols=304 Identities=14% Similarity=0.142 Sum_probs=190.3
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH---HH-hhhcCCCeEEEEcchHHHHHHHHHHHHH-cCCceeEecCCCc
Q 012728 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY---QI-PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~---~l-~~l~~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~ 113 (457)
....+.+.+..+.+++-+++++.||||||.-. ++ .-....+.+-+-.|.|.-|...+++... ++..... ...
T Consensus 357 vf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~---~VG 433 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGD---TVG 433 (1042)
T ss_pred hHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCcccc---ccc
Confidence 34567777777878888999999999999632 21 1223467777888999888877777665 3221110 000
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC
Q 012728 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (457)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~ 193 (457)
.. ..+.+. ..++..|-++|..++.. .......+.++..||+||||.-.- + ---.+-.++.+.....+
T Consensus 434 Ys---IRFEdv--T~~~T~IkymTDGiLLr-----EsL~d~~L~kYSviImDEAHERsl-N--tDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 434 YS---IRFEDV--TSEDTKIKYMTDGILLR-----ESLKDRDLDKYSVIIMDEAHERSL-N--TDILFGLLKKVLARRRD 500 (1042)
T ss_pred eE---EEeeec--CCCceeEEEeccchHHH-----HHhhhhhhhheeEEEechhhhccc-c--hHHHHHHHHHHHHhhcc
Confidence 00 000000 01223444444444322 223334455688999999998532 1 11112234445555568
Q ss_pred ccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHH-HHHHHH---hcCCccEEEEeCCcc
Q 012728 194 VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYAD-LCSVLK---ANGDTCAIVYCLERT 269 (457)
Q Consensus 194 ~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-l~~~l~---~~~~~~~iIf~~s~~ 269 (457)
.++|.+|||+... .+..+++ +-|......-.-| +...+...+. ++.++. +.+.+. ....+.++||....+
T Consensus 501 lKliVtSATm~a~---kf~nfFg-n~p~f~IpGRTyP-V~~~~~k~p~-eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQ---KFSNFFG-NCPQFTIPGRTYP-VEIMYTKTPV-EDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred ceEEEeeccccHH---HHHHHhC-CCceeeecCCccc-eEEEeccCch-HHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 8999999999766 3455555 3333322221111 1111111111 222222 222222 234567999999888
Q ss_pred cHHHHHHHHHh----C------CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecC----
Q 012728 270 TCDELSAYLSA----G------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (457)
Q Consensus 270 ~~~~l~~~L~~----~------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~---- 335 (457)
..+..+..++. . ++.+..+++.+++.-+.++++.-..|-.+++|||++++..+.+|++.+||..+.
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 77666555542 2 567899999999999988888777899999999999999999999999996543
Q ss_pred --------------CCCHHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 336 --------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 336 --------------p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
|-|-..-.||.|||||.| +|.|+-+|+..
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 447778899999999996 89999998864
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.5e-17 Score=169.64 Aligned_cols=316 Identities=21% Similarity=0.169 Sum_probs=204.5
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----cCCce
Q 012728 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----KGIAG 105 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~----~~~~~ 105 (457)
..|.. +++.|.-.--.+..| -+..+.||.|||+++.+|++. .+..+-|++|+..||.+.++.+.. +|+.+
T Consensus 78 ~lGm~-~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v 154 (913)
T PRK13103 78 VMGMR-HFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSV 154 (913)
T ss_pred HhCCC-cchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEE
Confidence 34533 566666554445444 489999999999999988864 488899999999999998888776 57888
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEecccccc-cc--------
Q 012728 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SW-------- 173 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~-~~-------- 173 (457)
..+.+......+...+. ++|+++|...++-.-....+ ........+.++||||+|.++ +.
T Consensus 155 ~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 155 GIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred EEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeec
Confidence 88877776666655543 78999988765322111111 111224568999999999985 20
Q ss_pred C--CCCHHHHHHHHHHHHhC--------------------CCcc------------------------------------
Q 012728 174 G--HDFRPSYRKLSSLRNYL--------------------PDVP------------------------------------ 195 (457)
Q Consensus 174 ~--~~~~~~~~~l~~~~~~~--------------------~~~~------------------------------------ 195 (457)
| ......|..+..+...+ .+.+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 0 01111222222211111 0011
Q ss_pred --------------------------------------------------------------------------------
Q 012728 196 -------------------------------------------------------------------------------- 195 (457)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (457)
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence
Q ss_pred EEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccH
Q 012728 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTC 271 (457)
Q Consensus 196 ~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~ 271 (457)
+.+||+|...+. .++....+ -.++..+.++|.+..... .......|+..+.+.++. ..+.++||-+.|.+.+
T Consensus 387 LsGMTGTa~te~-~Ef~~iY~---l~Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~S 462 (913)
T PRK13103 387 LSGMTGTADTEA-FEFRQIYG---LDVVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETS 462 (913)
T ss_pred hccCCCCCHHHH-HHHHHHhC---CCEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHH
Confidence 223333332221 12222221 123333444444322111 112224677777766654 3678999999999999
Q ss_pred HHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CceEEEEeccccccCCCC-------------------------
Q 012728 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK------------------------- 325 (457)
Q Consensus 272 ~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldip------------------------- 325 (457)
+.++..|++.|++...+++....++-..+- +.| ...|-|||++++||.||.
T Consensus 463 E~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~ 539 (913)
T PRK13103 463 EHMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKA 539 (913)
T ss_pred HHHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHH
Confidence 999999999999888888765544433332 344 355999999999999994
Q ss_pred ------------CccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 326 ------------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 326 ------------~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
+==+||-...+.|..--.|-.|||||.|.+|.+..|++-+|
T Consensus 540 ~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 540 DWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 12378889999999999999999999999999988887654
No 125
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.6e-19 Score=169.45 Aligned_cols=343 Identities=15% Similarity=0.136 Sum_probs=223.5
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh-----cCCCeEEEEcchHHHHHHHHH
Q 012728 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l-----~~~~~~lvl~P~~~L~~q~~~ 96 (457)
+.=++...+-+.+-.+....+|.+++..+.+|+++++.-.|.+||++++.+.+. ......+++.|+++++.++.+
T Consensus 270 ~~~E~~~~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~ 349 (1034)
T KOG4150|consen 270 DFWESIRSLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSK 349 (1034)
T ss_pred hHHHHHHHHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCC
Confidence 344444444444556678899999999999999999999999999999987654 346678999999999887554
Q ss_pred HHHHc-----CCceeEe--cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccc
Q 012728 97 GLKEK-----GIAGEFL--SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (457)
Q Consensus 97 ~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~ 169 (457)
.+.-. ..+...+ ......... ..+. +...+.++..|..+.|....+.+......-...++++||+|.
T Consensus 350 ~~~V~~~~I~~~K~A~V~~~D~~sE~~~-~A~~-----R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~ 423 (1034)
T KOG4150|consen 350 GQVVHVEVIKARKSAYVEMSDKLSETTK-SALK-----RIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCAL 423 (1034)
T ss_pred ceEEEEEehhhhhcceeecccCCCchhH-HHHH-----hcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceee
Confidence 33210 0011111 111111111 1111 123677888777666654433333222333356789999998
Q ss_pred ccc-cCCCCHHHHHHHHHHHHhC---CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecC--CCCCceEEEEEEeC---
Q 012728 170 ISS-WGHDFRPSYRKLSSLRNYL---PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRYKD--- 240 (457)
Q Consensus 170 ~~~-~~~~~~~~~~~l~~~~~~~---~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~--- 240 (457)
..- .|......+..+.++..-+ .+.+++-.+||+...+ +...+..++.+...+... ...........+..
T Consensus 424 Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~-~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~ 502 (1034)
T KOG4150|consen 424 YLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRT-RLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPT 502 (1034)
T ss_pred eecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHH-HHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCc
Confidence 742 2211222334444444433 2678888888887765 446677777776655443 22222222222111
Q ss_pred ---chhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHH----HhCCC----ceEeecCCCCHHHHHHHHHHHhcC
Q 012728 241 ---LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYL----SAGGI----SCAAYHAGLNDKARSSVLDDWISS 307 (457)
Q Consensus 241 ---~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L----~~~g~----~~~~~~~~~~~~~r~~~~~~f~~g 307 (457)
..+.++.....++.+ ..+-++|-||.++..|+.+-... .+.|. .+..|.||...++|.++....-.|
T Consensus 503 ~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G 582 (1034)
T KOG4150|consen 503 SKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGG 582 (1034)
T ss_pred chhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCC
Confidence 112333344444433 24678999999998887654333 22232 356789999999999999999999
Q ss_pred CceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEecc--chHHHHH
Q 012728 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM--DDRRRME 371 (457)
Q Consensus 308 ~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~--~~~~~~~ 371 (457)
+..-+|+|++++.||||...+.|++.++|.|+..+.|..|||||.++++.++.+... -|..++.
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~ 648 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMS 648 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhc
Confidence 999999999999999999999999999999999999999999999998877665443 3444443
No 126
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.82 E-value=1.5e-19 Score=168.72 Aligned_cols=307 Identities=17% Similarity=0.153 Sum_probs=196.6
Q ss_pred CCCCHHHHHHHHHHHc-C--CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcC-Cc---eeEec
Q 012728 37 AQFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IA---GEFLS 109 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~-~--~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~-~~---~~~~~ 109 (457)
.++||||+.++..+.. | ++.+++.|+|+|||++-+-++..-.+.+||+|.+..-+.||...++.+. +. ...+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 3789999999988873 3 5899999999999988765555558889999999988999988887742 11 11222
Q ss_pred CCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhH----HHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHH
Q 012728 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (457)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~----~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~ 185 (457)
+... ...+....+++.|..+++..+.. ..+.+......|.++++||+|.+...- || ++.
T Consensus 381 sd~K-----------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FR----RVl 443 (776)
T KOG1123|consen 381 SDAK-----------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FR----RVL 443 (776)
T ss_pred cccc-----------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HH----HHH
Confidence 1111 11223467888888887654432 223444555669999999999986532 33 222
Q ss_pred HHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC---------------------------------CCCce
Q 012728 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---------------------------------NRPNL 232 (457)
Q Consensus 186 ~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~i 232 (457)
.+.. ....+++|||+-.+..+ +...-.+-.|..+.... .+...
T Consensus 444 siv~---aHcKLGLTATLvREDdK-I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 444 SIVQ---AHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHH---HHhhccceeEEeecccc-ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 2222 23358899997655422 11110111122221110 00000
Q ss_pred EEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh-cCCceE
Q 012728 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SSRKQV 311 (457)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~-~g~~~v 311 (457)
.+.+. .+..-...+.|.++-+ ..+.++|||..+.-.....+-.|.+ .+++|..++.+|.++++.|+ +..++-
T Consensus 520 lLyvM-NP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNT 592 (776)
T KOG1123|consen 520 LLYVM-NPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNT 592 (776)
T ss_pred eeeec-CcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccce
Confidence 11111 1100122223333322 3677899999987776666655533 67899999999999999998 567899
Q ss_pred EEEeccccccCCCCCccEEEEecC-CCCHHHHHHHhcccCCCCC---C---ceEEEEeccchHHHHH
Q 012728 312 VVATVAFGMGIDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQL---P---SKSLLYYGMDDRRRME 371 (457)
Q Consensus 312 LvaT~~~~~Gldip~v~~Vi~~~~-p~s~~~~~Qr~GRagR~g~---~---g~~~~~~~~~~~~~~~ 371 (457)
++.+.+....+|+|..+++|+... -.|-.+-.||.||..|+.+ . ...+.+++.+..+.+.
T Consensus 593 IFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 593 IFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred EEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 999999999999999999998765 4478889999999988643 2 3345566666554443
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=2.2e-17 Score=173.37 Aligned_cols=181 Identities=13% Similarity=0.051 Sum_probs=109.5
Q ss_pred cEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEE---eC----chhhHHHHHHHHHHh--cCCccEEEEe
Q 012728 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY---KD----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (457)
Q Consensus 195 ~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~----~~~~~~~~l~~~l~~--~~~~~~iIf~ 265 (457)
.+|++|||++-.....+...+|+........++...+-...+.. .. ..+...+.+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 47899999962111236777887654433332222111111111 10 112222233332211 3567899999
Q ss_pred CCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCC--ccEEEEecCCC------
Q 012728 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFNIPK------ 337 (457)
Q Consensus 266 ~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~--v~~Vi~~~~p~------ 337 (457)
+|.+..+.+++.|......+ ...|... .+..++++|++++..||++|+.+.+|||+|. ...||...+|.
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997665444 4434222 2456899999998899999999999999973 45566666653
Q ss_pred ------------------------CHHHHHHHhcccCCCCCCceEEEEeccc--hHHHHHHHHHhcc
Q 012728 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (457)
Q Consensus 338 ------------------------s~~~~~Qr~GRagR~g~~g~~~~~~~~~--~~~~~~~i~~~~~ 378 (457)
-...+.|.+||.-|.....-+++++++. ...+-+.+++...
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCcccccHHHHHHHHhCC
Confidence 1235689999999986543345555554 2334455555543
No 128
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=7.6e-19 Score=172.18 Aligned_cols=302 Identities=16% Similarity=0.182 Sum_probs=188.5
Q ss_pred HHHHHHHcCCCEEEEcCCCchhhHH---HHHhh--hc----CCCeEEEEcchHHHHHHHHHHHHH-c---CCceeEecCC
Q 012728 45 DAIQAVLSGRDCFCLMPTGGGKSMC---YQIPA--LA----KPGIVLVVSPLIALMENQVIGLKE-K---GIAGEFLSST 111 (457)
Q Consensus 45 ~~i~~~~~~~~~lv~a~TGsGKT~~---~~l~~--l~----~~~~~lvl~P~~~L~~q~~~~~~~-~---~~~~~~~~~~ 111 (457)
+.+.++-.+--+++++.||+|||.- |+.-+ -. ..+.+=|--|.|.-|.-++++..- + +..+.+..-
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIR- 341 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIR- 341 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEE-
Confidence 4455555556688999999999952 22211 11 155677788998766665554332 2 222221110
Q ss_pred CcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC
Q 012728 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL 191 (457)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~ 191 (457)
......++.+|.++|..++ +..+...+-+.++..||+||||.-.-...-+-..+.++-.++..+
T Consensus 342 -----------fd~ti~e~T~IkFMTDGVL-----LrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~ 405 (1172)
T KOG0926|consen 342 -----------FDGTIGEDTSIKFMTDGVL-----LREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKY 405 (1172)
T ss_pred -----------eccccCCCceeEEecchHH-----HHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHH
Confidence 0001112344544444433 345566666777999999999985321111111223344444433
Q ss_pred C-------CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEe---CchhhHHHHHHHHHHhcCCccE
Q 012728 192 P-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK---DLLDDAYADLCSVLKANGDTCA 261 (457)
Q Consensus 192 ~-------~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~ 261 (457)
. ..+.|+||||+--.....-...+-+..| ++......-.+.+.+... +...+.+...+.+-+.-+.+.+
T Consensus 406 ~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~I 484 (1172)
T KOG0926|consen 406 YKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGI 484 (1172)
T ss_pred hhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcE
Confidence 2 3568999999865543322333344445 333333333333333332 2334555666666677788889
Q ss_pred EEEeCCcccHHHHHHHHHhC-----C-C----------------------------------------------------
Q 012728 262 IVYCLERTTCDELSAYLSAG-----G-I---------------------------------------------------- 283 (457)
Q Consensus 262 iIf~~s~~~~~~l~~~L~~~-----g-~---------------------------------------------------- 283 (457)
|||+....++.++++.|++. + .
T Consensus 485 LVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ 564 (1172)
T KOG0926|consen 485 LVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASL 564 (1172)
T ss_pred EEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhh
Confidence 99999999999999999754 0 0
Q ss_pred -----------------------------------------ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccC
Q 012728 284 -----------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (457)
Q Consensus 284 -----------------------------------------~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 322 (457)
-|..+++=++.+++..+++.--.|..-++|||++++..+
T Consensus 565 raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSL 644 (1172)
T KOG0926|consen 565 RAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSL 644 (1172)
T ss_pred hhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccc
Confidence 135566777788888888777788888999999999999
Q ss_pred CCCCccEEEEecCC--------C----------CHHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 323 DRKDVRLVCHFNIP--------K----------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 323 dip~v~~Vi~~~~p--------~----------s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
.||++++||..+.- . |-.+--||+|||||.| +|.|+-+|+..
T Consensus 645 TIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 645 TIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred ccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 99999999965532 2 4455589999999997 89999887753
No 129
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.80 E-value=1e-18 Score=143.95 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHhc--CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012728 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 244 ~~~~~l~~~l~~~--~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
.+...+..++... .++++||||++...++.+++.|.+.+.++..+||+++..+|..+++.|.+|...+|++|+++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5777777777765 47789999999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE
Q 012728 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 322 ldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~ 361 (457)
+|+|.+++||+++.|++...+.|++||++|.|+.|.++++
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998877653
No 130
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.80 E-value=2.9e-18 Score=175.30 Aligned_cols=311 Identities=16% Similarity=0.169 Sum_probs=200.3
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHH---HHHhhh-c--CCCeEEEEcchHHHHHHHHHHHHH-cCCceeEecC
Q 012728 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC---YQIPAL-A--KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~---~~l~~l-~--~~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~ 110 (457)
.....+.+.+.++.+++-+++.+.||+|||.- |++... . ...++++-.|.|--|...+++... .+.... .
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g---~ 249 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG---E 249 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC---C
Confidence 35578888999999999999999999999953 333221 1 245688888998766666666554 111111 0
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHh
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~ 190 (457)
..+... ... .......++.+||..++ +..+.....+..+..+|+||+|.-.... +|- ...++.++..
T Consensus 250 ~VGYqv--rl~---~~~s~~t~L~fcTtGvL-----Lr~L~~~~~l~~vthiivDEVHER~i~~-Dfl--Li~lk~lL~~ 316 (924)
T KOG0920|consen 250 EVGYQV--RLE---SKRSRETRLLFCTTGVL-----LRRLQSDPTLSGVTHIIVDEVHERSINT-DFL--LILLKDLLPR 316 (924)
T ss_pred eeeEEE--eee---cccCCceeEEEecHHHH-----HHHhccCcccccCceeeeeeEEEccCCc-ccH--HHHHHHHhhh
Confidence 000000 000 00011144544443332 3334455566778999999999865432 233 2345566777
Q ss_pred CCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCce-------------------EE-------------EEEE
Q 012728 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-------------------FY-------------EVRY 238 (457)
Q Consensus 191 ~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-------------------~~-------------~~~~ 238 (457)
.|+.++|+||||+..+. +..+++ ..|++......-|-. .+ .+..
T Consensus 317 ~p~LkvILMSAT~dae~---fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (924)
T KOG0920|consen 317 NPDLKVILMSATLDAEL---FSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWE 392 (924)
T ss_pred CCCceEEEeeeecchHH---HHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhcc
Confidence 78999999999998553 344444 222222111111100 00 0000
Q ss_pred eCchhhHHHHHHHHHHh-cCCccEEEEeCCcccHHHHHHHHHhC-------CCceEeecCCCCHHHHHHHHHHHhcCCce
Q 012728 239 KDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (457)
Q Consensus 239 ~~~~~~~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~-------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 310 (457)
....-+.+..+...+.. ...+.+|||.+...+...+.+.|... .+-+..+|+.|+..++..+...--.|..+
T Consensus 393 ~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RK 472 (924)
T KOG0920|consen 393 PEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRK 472 (924)
T ss_pred ccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcch
Confidence 11111233334444333 34678999999999999999999753 24578899999999999999988899999
Q ss_pred EEEEeccccccCCCCCccEEEEec--------CCC----------CHHHHHHHhcccCCCCCCceEEEEeccchHHH
Q 012728 311 VVVATVAFGMGIDRKDVRLVCHFN--------IPK----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (457)
Q Consensus 311 vLvaT~~~~~Gldip~v~~Vi~~~--------~p~----------s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~ 369 (457)
|+++|++++.+|-|++|-+||..+ +-. |...-.||.|||||. ++|.|+.+|+....+.
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 999999999999999999999644 322 456679999999998 6899999998765443
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.2e-16 Score=161.29 Aligned_cols=321 Identities=17% Similarity=0.149 Sum_probs=207.1
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHH----H
Q 012728 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK----E 100 (457)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~----~ 100 (457)
.+....+|.. +++.|.-..-.+..|+ +..+.||-|||+++.+|+.- .+..|-|++..--||..-.+.+. -
T Consensus 69 EA~~R~lG~r-~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy~f 145 (925)
T PRK12903 69 EATKRVLGKR-PYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNF 145 (925)
T ss_pred HHHHHHhCCC-cCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHHHH
Confidence 3444445654 7778877666666664 89999999999999998854 26677788888889875444443 3
Q ss_pred cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccc-cC--
Q 012728 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS-WG-- 174 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~-~~-- 174 (457)
+|+.+...........+...+. ++|.++|.--++-.-....+ ........+.+.||||+|.++= ..
T Consensus 146 LGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArT 217 (925)
T PRK12903 146 LGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKT 217 (925)
T ss_pred hCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCC
Confidence 7888888777666555544432 67777776544321111111 1112234577888888888742 00
Q ss_pred --------CCCHHHHHHHHHHHHhCC------------------------------------------------------
Q 012728 175 --------HDFRPSYRKLSSLRNYLP------------------------------------------------------ 192 (457)
Q Consensus 175 --------~~~~~~~~~l~~~~~~~~------------------------------------------------------ 192 (457)
..-...|..+..+...+.
T Consensus 218 PLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf 297 (925)
T PRK12903 218 PLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVM 297 (925)
T ss_pred cccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence 000012222111111100
Q ss_pred -------------------------C--------------------------------------ccEEEEeccCChhHHH
Q 012728 193 -------------------------D--------------------------------------VPILALTATAAPKVQK 209 (457)
Q Consensus 193 -------------------------~--------------------------------------~~~v~lSAT~~~~~~~ 209 (457)
+ .++.+||+|...+. .
T Consensus 298 ~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~-~ 376 (925)
T PRK12903 298 KEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE-Q 376 (925)
T ss_pred hcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH-H
Confidence 0 02456666654432 3
Q ss_pred HHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCce
Q 012728 210 DVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (457)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~ 285 (457)
++.... +-.++..+.++|.+..... .......|+..+.+.++. ..+.++||.|.|.+.++.++..|.+.|++.
T Consensus 377 Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h 453 (925)
T PRK12903 377 EFIDIY---NMRVNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPH 453 (925)
T ss_pred HHHHHh---CCCEEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCc
Confidence 333333 3335556667766544322 122234666666666554 367799999999999999999999999999
Q ss_pred EeecCCCCHHHHHHHHHHHhcC-CceEEEEeccccccCCCCCcc--------EEEEecCCCCHHHHHHHhcccCCCCCCc
Q 012728 286 AAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (457)
Q Consensus 286 ~~~~~~~~~~~r~~~~~~f~~g-~~~vLvaT~~~~~Gldip~v~--------~Vi~~~~p~s~~~~~Qr~GRagR~g~~g 356 (457)
..+++.-...+-..+ . +.| ...|.|||++++||.||.--. +||....|.|-.---|..||+||.|.+|
T Consensus 454 ~vLNAk~~e~EA~II--a-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 454 TVLNAKQNAREAEII--A-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred eeecccchhhHHHHH--H-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCC
Confidence 898886444333222 2 345 456999999999999996322 8999999999999999999999999999
Q ss_pred eEEEEeccch
Q 012728 357 KSLLYYGMDD 366 (457)
Q Consensus 357 ~~~~~~~~~~ 366 (457)
.+..|++-.|
T Consensus 531 ss~f~lSLeD 540 (925)
T PRK12903 531 ESRFFISLDD 540 (925)
T ss_pred cceEEEecch
Confidence 9988877654
No 132
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.79 E-value=3.6e-19 Score=132.20 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.5
Q ss_pred HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCC
Q 012728 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (457)
Q Consensus 276 ~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g 353 (457)
.+|+..|+.+..+||+++.++|..+++.|++|+..|||||+++++|+|+|++++||++++|+|+..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 133
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.79 E-value=9.8e-18 Score=158.75 Aligned_cols=355 Identities=19% Similarity=0.173 Sum_probs=214.3
Q ss_pred CCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCccc
Q 012728 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (457)
.+-++-++||.||||.-++- -+...+..++..|.|-||.+.++++...|+.+..+.+...... .......+
T Consensus 191 RkIi~H~GPTNSGKTy~ALq-rl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~~~--------~~~~~~a~ 261 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKTYRALQ-RLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERRFV--------LDNGNPAQ 261 (700)
T ss_pred heEEEEeCCCCCchhHHHHH-HHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceeeec--------CCCCCccc
Confidence 34466788999999987643 3334667899999999999999999999999887765542111 11122356
Q ss_pred EEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHH
Q 012728 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (457)
Q Consensus 133 i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~ 212 (457)
.+-+|-|++.+.. .+++.||||++.|.+....+ .=...++....+ =|-+.+- +.+...+.
T Consensus 262 hvScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGw----AWTrALLGl~Ad--EiHLCGe--psvldlV~ 321 (700)
T KOG0953|consen 262 HVSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGW----AWTRALLGLAAD--EIHLCGE--PSVLDLVR 321 (700)
T ss_pred ceEEEEEEeecCC------------ceEEEEehhHHhhcCcccch----HHHHHHHhhhhh--hhhccCC--chHHHHHH
Confidence 6777777765533 27899999999996532221 111112211111 0111121 22333333
Q ss_pred HHcCCCCCeEEecCCCCCceEEEEEEeCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCc-eEeecCC
Q 012728 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAG 291 (457)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~-~~~~~~~ 291 (457)
+.+.+....+....+.|- .. -...+.+..-++.-..+-+ |.|-|++..-.+...+.+.|.. +.+++|+
T Consensus 322 ~i~k~TGd~vev~~YeRl-------~p---L~v~~~~~~sl~nlk~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIYGs 390 (700)
T KOG0953|consen 322 KILKMTGDDVEVREYERL-------SP---LVVEETALGSLSNLKPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIYGS 390 (700)
T ss_pred HHHhhcCCeeEEEeeccc-------Cc---ceehhhhhhhhccCCCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEecC
Confidence 333332222211111110 00 0111133333444334433 3455677888888899888765 9999999
Q ss_pred CCHHHHHHHHHHHhc--CCceEEEEeccccccCCCCCccEEEEecCC---------CCHHHHHHHhcccCCCCC---Cce
Q 012728 292 LNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL---PSK 357 (457)
Q Consensus 292 ~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p---------~s~~~~~Qr~GRagR~g~---~g~ 357 (457)
++++.|.+....|.+ ++++||||||++++|+|+ +++-||+|+.- -+..+..|..|||||.|. .|.
T Consensus 391 LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~ 469 (700)
T KOG0953|consen 391 LPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGE 469 (700)
T ss_pred CCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCce
Confidence 999999999999997 899999999999999999 69999998864 368899999999999863 244
Q ss_pred EEEEeccchHHHHHHHHHhcccCCCC--ccchhhhhhHHH---------HHhHHHHHHHhhcC----cch---HHHHHhh
Q 012728 358 SLLYYGMDDRRRMEFILSKNQSKNSQ--SFSTRERSSKKS---------ISDFSQMVDYCEGS----GCR---RKKILES 419 (457)
Q Consensus 358 ~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~---------~~~~~~~~~~~~~~----~c~---r~~l~~~ 419 (457)
+ +-+..+|...++.+++........ ..+..+ ..+.- .+-++.+++.|+-. .|. -+.+.++
T Consensus 470 v-Ttl~~eDL~~L~~~l~~p~epi~~agl~pt~e-qie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~l 547 (700)
T KOG0953|consen 470 V-TTLHSEDLKLLKRILKRPVEPIKNAGLWPTDE-QIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAEL 547 (700)
T ss_pred E-EEeeHhhHHHHHHHHhCCchHHHhccCCccHH-HHHHHHHhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHH
Confidence 4 444556778888777754322111 111111 11110 11344566666653 344 2334444
Q ss_pred hCCCc-------ccccCC---CccccccccchHHHHHhccC
Q 012728 420 FGEQV-------LGCVAS---VTHRVVSFISPFILLISSSK 450 (457)
Q Consensus 420 f~~~~-------~~c~~~---~~~~~~~~~~~~~~~~~~~~ 450 (457)
++.-+ .-|++. -.+.+|.+...|.+.+|...
T Consensus 548 iehi~L~l~dr~~fc~aPvnk~~p~v~~~f~kfa~~~s~~~ 588 (700)
T KOG0953|consen 548 IEHIELPLKDRYKFCTAPVNKKMPRVCSAFLKFARQYSQNE 588 (700)
T ss_pred HHhCCcchhhhheeecCcccccCchHHHHHHHHHHHHhcCC
Confidence 44332 235543 36677777777777777554
No 134
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.77 E-value=7.3e-17 Score=150.50 Aligned_cols=321 Identities=15% Similarity=0.182 Sum_probs=204.2
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHH---HHH-hhhcCCCeEEEEcc
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC---YQI-PALAKPGIVLVVSP 86 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~---~~l-~~l~~~~~~lvl~P 86 (457)
....+.|...+.++...+.|++. .--....++.+-+..+.+++-+++++.||+|||.- |.+ ..+.....+..-.|
T Consensus 21 ~k~~Npf~~~p~s~rY~~ilk~R-~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQp 99 (699)
T KOG0925|consen 21 AKAINPFNGKPYSQRYYDILKKR-RELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQP 99 (699)
T ss_pred hhhcCCCCCCcCcHHHHHHHHHH-hcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCc
Confidence 33477888899999999999985 22234566667778888889999999999999942 111 12223466788889
Q ss_pred hHHHHHHHHHHHHH-c----CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC---cccCchhH-HHHHhhhhcC
Q 012728 87 LIALMENQVIGLKE-K----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE---LTATPGFM-SKLKKIHSRG 157 (457)
Q Consensus 87 ~~~L~~q~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~---~i~t~~~~-~~l~~~~~~~ 157 (457)
.|.-+.+...+... + |..+....... +. ++|. ..+|.+.+ ....+...++
T Consensus 100 rrvaamsva~RVadEMDv~lG~EVGysIrfE------------dC---------~~~~T~Lky~tDgmLlrEams~p~l~ 158 (699)
T KOG0925|consen 100 RRVAAMSVAQRVADEMDVTLGEEVGYSIRFE------------DC---------TSPNTLLKYCTDGMLLREAMSDPLLG 158 (699)
T ss_pred hHHHHHHHHHHHHHHhccccchhcccccccc------------cc---------CChhHHHHHhcchHHHHHHhhCcccc
Confidence 99888777766554 2 21111100000 00 0111 23344432 2334455577
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEE
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 237 (457)
.+..||+||||.-.-- ---..-.++.+....|+.++|.+|||+..... ..+++ +.|.+-....+.-.++|.-.
T Consensus 159 ~y~viiLDeahERtlA---TDiLmGllk~v~~~rpdLk~vvmSatl~a~Kf---q~yf~-n~Pll~vpg~~PvEi~Yt~e 231 (699)
T KOG0925|consen 159 RYGVIILDEAHERTLA---TDILMGLLKEVVRNRPDLKLVVMSATLDAEKF---QRYFG-NAPLLAVPGTHPVEIFYTPE 231 (699)
T ss_pred cccEEEechhhhhhHH---HHHHHHHHHHHHhhCCCceEEEeecccchHHH---HHHhC-CCCeeecCCCCceEEEecCC
Confidence 7999999999974210 00111335666677789999999999876643 33332 34444433333223333222
Q ss_pred E-eCchhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC---------CCceEeecCCCCHHHHHHHHHHHh--
Q 012728 238 Y-KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWI-- 305 (457)
Q Consensus 238 ~-~~~~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~---------g~~~~~~~~~~~~~~r~~~~~~f~-- 305 (457)
. .+..+..+..+.++-.....+.+++|....++.+..++.+... .++|..+| +.++..+++...
T Consensus 232 ~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~ 307 (699)
T KOG0925|consen 232 PERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEK 307 (699)
T ss_pred CChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcc
Confidence 2 2333444555555555555777999999999988888877743 24677788 333333333222
Q ss_pred -cC--CceEEEEeccccccCCCCCccEEEEecC------------------CCCHHHHHHHhcccCCCCCCceEEEEecc
Q 012728 306 -SS--RKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 306 -~g--~~~vLvaT~~~~~Gldip~v~~Vi~~~~------------------p~s~~~~~Qr~GRagR~g~~g~~~~~~~~ 364 (457)
+| ..+|+|+|++++..+-++.+.+||.-++ |-|..+-.||.|||||. .+|+|.-+|+.
T Consensus 308 ~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte 386 (699)
T KOG0925|consen 308 RNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTE 386 (699)
T ss_pred cCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecH
Confidence 12 3579999999999999999999996553 44788999999999997 69999999886
Q ss_pred c
Q 012728 365 D 365 (457)
Q Consensus 365 ~ 365 (457)
.
T Consensus 387 ~ 387 (699)
T KOG0925|consen 387 E 387 (699)
T ss_pred H
Confidence 4
No 135
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.76 E-value=4.1e-17 Score=166.62 Aligned_cols=310 Identities=14% Similarity=0.091 Sum_probs=202.0
Q ss_pred CCCHHHHHHHHHHH--c--CCCEEEEcCCCchhhHHHH-Hhhh---cC--------CCeEEEEcchHHHHHHHHHHHHHc
Q 012728 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQ-IPAL---AK--------PGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~--~--~~~~lv~a~TGsGKT~~~~-l~~l---~~--------~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
++|.||++.+.++. + +-+.|++..+|-|||+-.+ +.+. .+ ....||+||. .|+..|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 57889999998864 3 3478999999999997543 2221 12 3348999995 8999999999987
Q ss_pred CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHH
Q 012728 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (457)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~ 181 (457)
...............+.. +.....+.++++++++++.+ ++.... ...|.++|+||.|.+.+-.
T Consensus 1054 ~pfL~v~~yvg~p~~r~~----lR~q~~~~~iiVtSYDv~Rn-----D~d~l~-~~~wNYcVLDEGHVikN~k------- 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRE----LRDQYKNANIIVTSYDVVRN-----DVDYLI-KIDWNYCVLDEGHVIKNSK------- 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHH----HHhhccccceEEeeHHHHHH-----HHHHHH-hcccceEEecCcceecchH-------
Confidence 554322222222222222 22222336788888776643 222111 2238899999999985421
Q ss_pred HHHHHHHHhCCCccEEEEeccCChhHHHHHHHHcCCCCCeEE--------------------------------------
Q 012728 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-------------------------------------- 223 (457)
Q Consensus 182 ~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 223 (457)
..+....+++..-+.+.+|+||-.+...+++..+..--|..+
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 445555555555668889999865444444433221111100
Q ss_pred ------------------------------------------------------ecCCCCCc-----e------------
Q 012728 224 ------------------------------------------------------KSSFNRPN-----L------------ 232 (457)
Q Consensus 224 ------------------------------------------------------~~~~~~~~-----i------------ 232 (457)
..+..... +
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 00000000 0
Q ss_pred --EEEEEEe-C-------------------chhhHHHHHHHHHHhc----------------CCccEEEEeCCcccHHHH
Q 012728 233 --FYEVRYK-D-------------------LLDDAYADLCSVLKAN----------------GDTCAIVYCLERTTCDEL 274 (457)
Q Consensus 233 --~~~~~~~-~-------------------~~~~~~~~l~~~l~~~----------------~~~~~iIf~~s~~~~~~l 274 (457)
....... + ....|+..|.+++.+- .+.+++|||.-+....-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 0000000 0 0013555566666442 245899999999999999
Q ss_pred HHHHHhCC-CceE--eecCCCCHHHHHHHHHHHhcC-CceEE-EEeccccccCCCCCccEEEEecCCCCHHHHHHHhccc
Q 012728 275 SAYLSAGG-ISCA--AYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (457)
Q Consensus 275 ~~~L~~~g-~~~~--~~~~~~~~~~r~~~~~~f~~g-~~~vL-vaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRa 349 (457)
..-|-+.. .+|. .+.|..++.+|.++.++|.++ .++|| .+|-+.+-|+|+-+++.||+++-.|||..-+|.+.||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 88876653 2343 789999999999999999998 78875 6788999999999999999999999999999999999
Q ss_pred CCCCCCceEEEE--eccc
Q 012728 350 GRDQLPSKSLLY--YGMD 365 (457)
Q Consensus 350 gR~g~~g~~~~~--~~~~ 365 (457)
.|-|++..+-+| ++..
T Consensus 1437 HRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred HhhcCceeeeeeeehhcc
Confidence 999998766544 4444
No 136
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.76 E-value=1.9e-15 Score=153.68 Aligned_cols=280 Identities=16% Similarity=0.113 Sum_probs=173.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----
Q 012728 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (457)
Q Consensus 28 ~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~---- 100 (457)
.+.....|.. +++.|.-+.-.+. +.-++.+.||.|||+++.+|+.. .+..|-|++++..||.+-.+.+..
T Consensus 67 Ea~~R~lG~r-~ydvQlig~l~L~--~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~ 143 (870)
T CHL00122 67 EASFRTLGLR-HFDVQLIGGLVLN--DGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRF 143 (870)
T ss_pred HHHHHHhCCC-CCchHhhhhHhhc--CCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHH
Confidence 3444445665 6777776654444 44699999999999999988853 378899999999999987776554
Q ss_pred cCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEecccccc-cc---
Q 012728 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SW--- 173 (457)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~-~~--- 173 (457)
+|+.+..+........+...+. .+|.++|.--++-.-....+ ........+.+.||||+|.++ +.
T Consensus 144 LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArT 215 (870)
T CHL00122 144 LGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEART 215 (870)
T ss_pred cCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCC
Confidence 7888888777666655544442 67777776544322211111 111123457899999999884 20
Q ss_pred -----C----------------------CCCH------------HHHHHHHHHH---------------------Hh--C
Q 012728 174 -----G----------------------HDFR------------PSYRKLSSLR---------------------NY--L 191 (457)
Q Consensus 174 -----~----------------------~~~~------------~~~~~l~~~~---------------------~~--~ 191 (457)
| .+|. .-...+..+. .. +
T Consensus 216 PLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf 295 (870)
T CHL00122 216 PLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELF 295 (870)
T ss_pred ceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHH
Confidence 0 0000 0001111110 00 0
Q ss_pred ------------------------CC--------------------------------------ccEEEEeccCChhHHH
Q 012728 192 ------------------------PD--------------------------------------VPILALTATAAPKVQK 209 (457)
Q Consensus 192 ------------------------~~--------------------------------------~~~v~lSAT~~~~~~~ 209 (457)
++ .++.+||+|.... ..
T Consensus 296 ~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te-~~ 374 (870)
T CHL00122 296 FKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE-EL 374 (870)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-HH
Confidence 00 0256788887553 33
Q ss_pred HHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCce
Q 012728 210 DVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (457)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~ 285 (457)
++....++ .++..+.++|....... ......+|...+.+.+.. ..+.++||.+.|.+..+.++..|.+.|++.
T Consensus 375 Ef~~iY~l---~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h 451 (870)
T CHL00122 375 EFEKIYNL---EVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPH 451 (870)
T ss_pred HHHHHhCC---CEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCcc
Confidence 44444433 35556666666544331 122334566666655443 367789999999999999999999999999
Q ss_pred EeecCCC--CHHHHHHHHHHHhcCC-ceEEEEeccccccCCCC
Q 012728 286 AAYHAGL--NDKARSSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (457)
Q Consensus 286 ~~~~~~~--~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip 325 (457)
..+++.- ..++-..+-+ .|+ ..|-|||++++||.||.
T Consensus 452 ~vLNAk~~~~~~EA~IIA~---AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 452 QLLNAKPENVRRESEIVAQ---AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ceeeCCCccchhHHHHHHh---cCCCCcEEEeccccCCCcCee
Confidence 9999863 2333333322 343 45999999999999973
No 137
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.75 E-value=5.8e-17 Score=165.87 Aligned_cols=381 Identities=18% Similarity=0.237 Sum_probs=241.2
Q ss_pred CCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC--CCeEEEEcchHHHHHHHHHHHHH-----cCCceeEecC
Q 012728 39 FRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFLSS 110 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~--~~~~lvl~P~~~L~~q~~~~~~~-----~~~~~~~~~~ 110 (457)
.+|+|.++++.+.+. +++++.+|+|||||.++.++++.. .++++++.|..+.+..+++.|.+ .|.....+.+
T Consensus 1144 ~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~g 1223 (1674)
T KOG0951|consen 1144 FNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTG 1223 (1674)
T ss_pred cCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCC
Confidence 489999999998865 579999999999999999988875 67899999999999988887766 2333434444
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHH---HHHH
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK---LSSL 187 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~---l~~~ 187 (457)
....+.+... . -++ ++.||..+..+. ....+++.|.||.|.+... +-+.|.. +..+
T Consensus 1224 e~s~~lkl~~-------~--~~v------ii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~---~g~v~evi~S~r~i 1282 (1674)
T KOG0951|consen 1224 ETSLDLKLLQ-------K--GQV------IISTPEQWDLLQ---SIQQVDLFIVDELHLIGGV---YGAVYEVICSMRYI 1282 (1674)
T ss_pred ccccchHHhh-------h--cce------EEechhHHHHHh---hhhhcceEeeehhhhhccc---CCceEEEEeeHHHH
Confidence 4333322111 1 234 555666666553 4455899999999999642 2222222 2333
Q ss_pred HHhCC-CccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEE--EEEEeCc---hhh-------HHHHHHHHHH
Q 012728 188 RNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDL---LDD-------AYADLCSVLK 254 (457)
Q Consensus 188 ~~~~~-~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~---~~~-------~~~~l~~~l~ 254 (457)
..++. +.+++++|..+.+. +++ ++.....++..+.......+ .+..... ... .+..+....
T Consensus 1283 a~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a- 1356 (1674)
T KOG0951|consen 1283 ASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA- 1356 (1674)
T ss_pred HHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh-
Confidence 33332 68899999988765 222 66666666655544332222 2221111 111 112222221
Q ss_pred hcCCccEEEEeCCcccHHHHHHHHHhC----------------------CCceEeecCCCCHHHHHHHHHHHhcCCceEE
Q 012728 255 ANGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (457)
Q Consensus 255 ~~~~~~~iIf~~s~~~~~~l~~~L~~~----------------------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vL 312 (457)
..+++++||++++++|..++.-|-.. ..+..+-|-+++..+...+...|..|.++|+
T Consensus 1357 -~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~ 1435 (1674)
T KOG0951|consen 1357 -GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVC 1435 (1674)
T ss_pred -cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEE
Confidence 25678999999999998877544210 1122223889999999999999999999999
Q ss_pred EEeccccccCCCCCccEEEE-----ec------CCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhcccCC
Q 012728 313 VATVAFGMGIDRKDVRLVCH-----FN------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (457)
Q Consensus 313 vaT~~~~~Gldip~v~~Vi~-----~~------~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 381 (457)
|...- ..|+-... +.||. || .+.+.....|++|+|.| .|+|+++......+.++..+.+..+..
T Consensus 1436 v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~lPve 1510 (1674)
T KOG0951|consen 1436 VMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPLPVE 1510 (1674)
T ss_pred EEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcCchH
Confidence 98877 88887653 34442 22 35679999999999988 579999999999999998887766544
Q ss_pred CCc-----cchhhhhhHHHHHhHHHHHHHhhcCcchHHHHHhhhCCCcccccCCCccccccccchHHHH-HhccCCCcee
Q 012728 382 SQS-----FSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQVLGCVASVTHRVVSFISPFILL-ISSSKTDTCI 455 (457)
Q Consensus 382 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~c~r~~l~~~f~~~~~~c~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 455 (457)
+.. .....++..+-.++-+.-++|.-.+.--|+. .++....+-.+..-..+.++.+++... ..-.-++-||
T Consensus 1511 s~lq~~lhd~~n~ei~~~tienkqd~vd~lt~s~~yrr~---~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i 1587 (1674)
T KOG0951|consen 1511 SHLQHCLHDNFNAEIVTKTIENKQDAVDYLTWSFMYRRL---PQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCI 1587 (1674)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHHHhhhcc---ccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceE
Confidence 322 1123344444555556666666543211111 112222222335555677778888776 4445555665
No 138
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.73 E-value=3e-15 Score=160.20 Aligned_cols=184 Identities=14% Similarity=0.147 Sum_probs=114.1
Q ss_pred cEEEEeccCChhH-HHHHHHHcCCCCC----eEEecCCCCC-ceEEEEEE-eC-----chhhHHHHHHHHHH---hcCCc
Q 012728 195 PILALTATAAPKV-QKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KD-----LLDDAYADLCSVLK---ANGDT 259 (457)
Q Consensus 195 ~~v~lSAT~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~-~i~~~~~~-~~-----~~~~~~~~l~~~l~---~~~~~ 259 (457)
.+|++|||+.... ...+...+|+.+. ..+.++++.. +....+.. .+ ..+.....+.+.+. ...++
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~~~g 753 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKATKG 753 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHhCCC
Confidence 3789999987532 3445677887642 2333344432 22221111 11 11222233333332 23456
Q ss_pred cEEEEeCCcccHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCc--cEEEEecC
Q 012728 260 CAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV--RLVCHFNI 335 (457)
Q Consensus 260 ~~iIf~~s~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v--~~Vi~~~~ 335 (457)
+++|+++|....+.+++.|..... ....+.-+++...|..++++|++++-.||++|..+.+|||+|+- +.||...+
T Consensus 754 ~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL 833 (928)
T PRK08074 754 RMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL 833 (928)
T ss_pred CEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC
Confidence 799999999999999999976422 12223324444567889999999988999999999999999974 78888776
Q ss_pred CC------------------------------CHHHHHHHhcccCCCCCCceEEEEeccc--hHHHHHHHHHhcc
Q 012728 336 PK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD--DRRRMEFILSKNQ 378 (457)
Q Consensus 336 p~------------------------------s~~~~~Qr~GRagR~g~~g~~~~~~~~~--~~~~~~~i~~~~~ 378 (457)
|. ....+.|.+||.-|..+.--++++++.. ...+-+.+++...
T Consensus 834 PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 834 PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccchHHHHHHHhCC
Confidence 64 1234589999999987544455555554 3334455555543
No 139
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.73 E-value=1.2e-16 Score=149.29 Aligned_cols=306 Identities=14% Similarity=0.114 Sum_probs=191.4
Q ss_pred CCCCHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHH-Hhhh-cCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCc
Q 012728 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ-IPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~-l~~l-~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 113 (457)
+.+-|+|.+.+...+ +|..+++...+|-|||+-++ ++.. ......+|+||. ++-..|.+.+.++......++-...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~~ 275 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVDK 275 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEec
Confidence 357899999887766 56778888899999998665 3333 347789999996 5556788888885332222111100
Q ss_pred HHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-
Q 012728 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP- 192 (457)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~- 192 (457)
... ....-.....+ .+.+...+..+.+...-.++.+||+||.|.+.+... .+.+.+..-..
T Consensus 276 ~~D------~~~~~~t~~~v------~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~skt------kr~Ka~~dllk~ 337 (689)
T KOG1000|consen 276 SSD------PLPDVCTSNTV------AIVSYEQLSLLHDILKKEKYRVVIFDESHMLKDSKT------KRTKAATDLLKV 337 (689)
T ss_pred ccC------CccccccCCeE------EEEEHHHHHHHHHHHhcccceEEEEechhhhhccch------hhhhhhhhHHHH
Confidence 000 00000011222 234455555565555556689999999999865221 22222222111
Q ss_pred CccEEEEeccCChhHHHHHHHHcCCCCCe------------------EE-------------------------------
Q 012728 193 DVPILALTATAAPKVQKDVMESLCLQNPL------------------VL------------------------------- 223 (457)
Q Consensus 193 ~~~~v~lSAT~~~~~~~~~~~~~~~~~~~------------------~~------------------------------- 223 (457)
-.+++++|+|+.-.--.++...+..-++. ..
T Consensus 338 akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL 417 (689)
T KOG1000|consen 338 AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL 417 (689)
T ss_pred hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999997421101001000000000 00
Q ss_pred -ecCCCCCceEEEEEEeCc---------------------------------hhhHHHHHHHHHHh------cCCccEEE
Q 012728 224 -KSSFNRPNLFYEVRYKDL---------------------------------LDDAYADLCSVLKA------NGDTCAIV 263 (457)
Q Consensus 224 -~~~~~~~~i~~~~~~~~~---------------------------------~~~~~~~l~~~l~~------~~~~~~iI 263 (457)
..+..+..+.+....... ...|...+.+++.. .++.+.+|
T Consensus 418 ~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflV 497 (689)
T KOG1000|consen 418 KQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLV 497 (689)
T ss_pred hhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEE
Confidence 000001111111000000 00222334444433 35678999
Q ss_pred EeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc-CCceE-EEEeccccccCCCCCccEEEEecCCCCHHH
Q 012728 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341 (457)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~-g~~~v-LvaT~~~~~Gldip~v~~Vi~~~~p~s~~~ 341 (457)
||.-....+.+...+.++++....+.|..+..+|....+.|+. .+..| +++-.+.+.|+++...+.|++..+++++.-
T Consensus 498 FaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgv 577 (689)
T KOG1000|consen 498 FAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGV 577 (689)
T ss_pred EehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCce
Confidence 9999999999999999999999999999999999999999994 55665 667788999999999999999999999999
Q ss_pred HHHHhcccCCCCCCceEEEE
Q 012728 342 FYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 342 ~~Qr~GRagR~g~~g~~~~~ 361 (457)
.+|.-.|+.|.|+.+.+.++
T Consensus 578 LlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 578 LLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred EEechhhhhhccccceeeEE
Confidence 99999999999998765433
No 140
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=3.2e-14 Score=144.67 Aligned_cols=275 Identities=19% Similarity=0.162 Sum_probs=167.7
Q ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHHHH----cCCce
Q 012728 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE----KGIAG 105 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~~~----~~~~~ 105 (457)
..|.. +++.|.-.--.+..| -+..+.||-|||+++.+|+... +..|-|+++...||..-.+.+.. +|+.+
T Consensus 81 ~lG~r-~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtv 157 (939)
T PRK12902 81 VLGMR-HFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSV 157 (939)
T ss_pred HhCCC-cchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeE
Confidence 34544 666666655555455 5999999999999999988753 77899999999999876665544 78888
Q ss_pred eEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcCCccEEEEecccccc-cc--------
Q 012728 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS-SW-------- 173 (457)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~~l~~lViDEah~~~-~~-------- 173 (457)
..+........+...+. ++|+++|+.-++-.-....+.. ......+.+.||||+|.++ +.
T Consensus 158 g~i~~~~~~~err~aY~--------~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIIS 229 (939)
T PRK12902 158 GLIQQDMSPEERKKNYA--------CDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIIS 229 (939)
T ss_pred EEECCCCChHHHHHhcC--------CCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCccccc
Confidence 88877666555544432 7889988875543332333321 1234558899999999884 21
Q ss_pred C--CCCHHHHHHHHHHHHhCC---------------Ccc-----------------------------------------
Q 012728 174 G--HDFRPSYRKLSSLRNYLP---------------DVP----------------------------------------- 195 (457)
Q Consensus 174 ~--~~~~~~~~~l~~~~~~~~---------------~~~----------------------------------------- 195 (457)
| ..-...|.....+...+. +.+
T Consensus 230 g~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~l 309 (939)
T PRK12902 230 GQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKEL 309 (939)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHH
Confidence 1 011112222222211110 111
Q ss_pred -------------------------------------------------------------------EEEEeccCChhHH
Q 012728 196 -------------------------------------------------------------------ILALTATAAPKVQ 208 (457)
Q Consensus 196 -------------------------------------------------------------------~v~lSAT~~~~~~ 208 (457)
+.+||+|...+.
T Consensus 310 f~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~- 388 (939)
T PRK12902 310 FIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEE- 388 (939)
T ss_pred HhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHH-
Confidence 233444433221
Q ss_pred HHHHHHcCCCCCeEEecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCc
Q 012728 209 KDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (457)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~ 284 (457)
.++....+ -.++..+.++|.+..... .......|+..+.+.++. ..+.|+||-+.|.+..+.++..|.+.|++
T Consensus 389 ~Ef~~iY~---l~Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 389 VEFEKTYK---LEVTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHHHhC---CcEEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 12222221 223344445554433221 122224666666665554 36789999999999999999999999999
Q ss_pred eEeecCCC-C-HHHHHHHHHHHhcCC-ceEEEEeccccccCCCC
Q 012728 285 CAAYHAGL-N-DKARSSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (457)
Q Consensus 285 ~~~~~~~~-~-~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip 325 (457)
...+++.- . .++-..+-+ .|+ ..|-|||++++||-||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ---AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh---cCCCCcEEEeccCCCCCcCEe
Confidence 88898862 2 333232222 343 45999999999999974
No 141
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.69 E-value=3.2e-14 Score=143.23 Aligned_cols=168 Identities=14% Similarity=0.050 Sum_probs=109.3
Q ss_pred cEEEEeccCChhH------HHHHHHHcCCCCCe-EEecCCC----CCc--eEEEE-E-----EeCc--------------
Q 012728 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEV-R-----YKDL-------------- 241 (457)
Q Consensus 195 ~~v~lSAT~~~~~------~~~~~~~~~~~~~~-~~~~~~~----~~~--i~~~~-~-----~~~~-------------- 241 (457)
.+|+.|||+.-.. ...+.+.+|+.... .+.++++ +.. +.|.. . +.+.
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 3799999998644 67888889986442 3345566 334 22211 0 0111
Q ss_pred --hhhHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhc----CCceEEEEe
Q 012728 242 --LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (457)
Q Consensus 242 --~~~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vLvaT 315 (457)
.+.....+.++++.. +++++|.+.|....+.+++.|...---...+.|+.+ .+..++++|+. |.-.||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~-~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKA-QGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHc-CCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 011334455555554 457999999999999999999764222345555443 34567888886 478999999
Q ss_pred ccccccCCC--------C--CccEEEEecCCC-------------------------CHHHHHHHhcccCCCCCC--ceE
Q 012728 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (457)
Q Consensus 316 ~~~~~Gldi--------p--~v~~Vi~~~~p~-------------------------s~~~~~Qr~GRagR~g~~--g~~ 358 (457)
+.+.+|||+ | .++.||+..+|. ....+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 2 378898877773 123458888999997654 334
Q ss_pred EEEeccc
Q 012728 359 LLYYGMD 365 (457)
Q Consensus 359 ~~~~~~~ 365 (457)
++++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 4555544
No 142
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.69 E-value=2.4e-14 Score=146.06 Aligned_cols=285 Identities=15% Similarity=0.046 Sum_probs=184.9
Q ss_pred EEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHH-cC-CceeEecCCCcHHHHHHHHHHhhcCCCccc
Q 012728 58 CLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (457)
Q Consensus 58 v~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (457)
..+.+|||||.+|+-.+ +..++.+||++|..+|..|..++++. ++ .....+++..+...+...|..+..+. .+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~ 242 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--AR 242 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--Cc
Confidence 33446999999987544 56788999999999999999999997 55 66888999999999988888888776 78
Q ss_pred EEEECCCcccCchhHHHHHhhhhcCCccEEEEecccccccc-CCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHH
Q 012728 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW-GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (457)
Q Consensus 133 i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~-~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~ 211 (457)
|+++|---+..| +.++.+|||||-|.-.-. ....+..-..+...+....+.++|+.|||++-+.....
T Consensus 243 IViGtRSAvFaP-----------~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 243 VVVGTRSAVFAP-----------VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred EEEEcceeEEec-----------cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 888888776655 345899999999975321 11112223556667777779999999999998876533
Q ss_pred HHHcCCCCCeEE---ecCCCCCceEEEEEEe------------CchhhHHHHHHHHHHhcCCccEEEEeCCc--------
Q 012728 212 MESLCLQNPLVL---KSSFNRPNLFYEVRYK------------DLLDDAYADLCSVLKANGDTCAIVYCLER-------- 268 (457)
Q Consensus 212 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~------------~~~~~~~~~l~~~l~~~~~~~~iIf~~s~-------- 268 (457)
.. +....... ......|.+...-... ......++.+.+.++ .+ ++|||.|.+
T Consensus 312 ~~--g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~--~g-qvll~lnRrGyap~l~C 386 (665)
T PRK14873 312 ES--GWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALE--HG-PVLVQVPRRGYVPSLAC 386 (665)
T ss_pred hc--CcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHh--cC-cEEEEecCCCCCCeeEh
Confidence 22 11110000 0011223332222110 011233344444444 34 899999877
Q ss_pred ---------------------------------------------------ccHHHHHHHHHhC--CCceEeecCCCCHH
Q 012728 269 ---------------------------------------------------TTCDELSAYLSAG--GISCAAYHAGLNDK 295 (457)
Q Consensus 269 ---------------------------------------------------~~~~~l~~~L~~~--g~~~~~~~~~~~~~ 295 (457)
-.++++++.|++. +.++..+.+
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~----- 461 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGG----- 461 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEECh-----
Confidence 2235555555543 233333222
Q ss_pred HHHHHHHHHhcCCceEEEEec----cccccCCCCCccEEEEecCCC------------CHHHHHHHhcccCCCCCCceEE
Q 012728 296 ARSSVLDDWISSRKQVVVATV----AFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSL 359 (457)
Q Consensus 296 ~r~~~~~~f~~g~~~vLvaT~----~~~~Gldip~v~~Vi~~~~p~------------s~~~~~Qr~GRagR~g~~g~~~ 359 (457)
..+++.|. ++.+|||+|. +++ +++..|+..|... ....+.|-.||+||.+.+|.++
T Consensus 462 --d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~ 533 (665)
T PRK14873 462 --DQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVV 533 (665)
T ss_pred --HHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEE
Confidence 24678886 5899999999 555 3677777666421 3455689999999999999998
Q ss_pred EEeccchHHHHHHHH
Q 012728 360 LYYGMDDRRRMEFIL 374 (457)
Q Consensus 360 ~~~~~~~~~~~~~i~ 374 (457)
+...+++ ..++.+.
T Consensus 534 iq~~p~~-~~~~~l~ 547 (665)
T PRK14873 534 VVAESSL-PTVQALI 547 (665)
T ss_pred EEeCCCC-HHHHHHH
Confidence 8765443 3344343
No 143
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.68 E-value=1.9e-16 Score=159.25 Aligned_cols=310 Identities=18% Similarity=0.169 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHH---cC-CCEEEEcCCCchhhHH------HHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012728 38 QFRDKQLDAIQAVL---SG-RDCFCLMPTGGGKSMC------YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~---~~-~~~lv~a~TGsGKT~~------~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
++++||...+.++. ++ -+.|+...+|-|||.. |++-.....+.-+|++|+-.|.+ |..++.........
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPSVQK 472 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-chhhccccccceee
Confidence 79999999999976 33 4788889999999953 33334445788999999988875 66667766666666
Q ss_pred ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 012728 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~ 187 (457)
+........+..+...+..++ ++++++|.+.+.-+.- +.. .-.|.++||||.|+|..-. ..+...
T Consensus 473 i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~---lLs---KI~W~yMIIDEGHRmKNa~-------~KLt~~ 537 (1157)
T KOG0386|consen 473 IQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKA---LLS---KISWKYMIIDEGHRMKNAI-------CKLTDT 537 (1157)
T ss_pred eeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHH---HHh---ccCCcceeecccccccchh-------hHHHHH
Confidence 666666777777777777765 7888888775544221 111 2238899999999986522 334433
Q ss_pred HH-hCCCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCC------CC-------------------------------
Q 012728 188 RN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------NR------------------------------- 229 (457)
Q Consensus 188 ~~-~~~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~------~~------------------------------- 229 (457)
+. .+.....+++|+|+-.+...+++..++.--|.++.+.. +.
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 33 33455678899998766655555554443332221100 00
Q ss_pred ------------C-----------------------------------------------------ceEE-------EEE
Q 012728 230 ------------P-----------------------------------------------------NLFY-------EVR 237 (457)
Q Consensus 230 ------------~-----------------------------------------------------~i~~-------~~~ 237 (457)
| |..+ .+.
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~ 697 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYT 697 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccc
Confidence 0 0000 000
Q ss_pred EeCch------hhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-
Q 012728 238 YKDLL------DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR- 308 (457)
Q Consensus 238 ~~~~~------~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~- 308 (457)
..-.. ..|+..|.+++.+ ..+++++.|+.-..-...+..+|.-.++....+.|....++|-..++.|..-.
T Consensus 698 ~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 698 LHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred cccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 00000 0222333333322 25678999999888888899999988999999999999999999999998643
Q ss_pred --ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEec
Q 012728 309 --KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 309 --~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
.-.|.+|.+.+.|+|+..++.||.||.-|++..+.|+-.||.|.|+...+-++..
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 3468999999999999999999999999999999999999999999877766644
No 144
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.68 E-value=1.2e-15 Score=134.90 Aligned_cols=165 Identities=33% Similarity=0.432 Sum_probs=111.0
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHHHHHHHHHHHHcCCc---
Q 012728 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEKGIA--- 104 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L~~q~~~~~~~~~~~--- 104 (457)
+++.+++++|.++++.+... +.+++.+|||+|||.++..+++.. ..+++|++|+.+++.|+...+......
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 999999999999999877666543 367999999999999999998885522
Q ss_pred --eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhh--hhcCCccEEEEeccccccccCCCCHHH
Q 012728 105 --GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRGLLNLVAIDEAHCISSWGHDFRPS 180 (457)
Q Consensus 105 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~--~~~~~l~~lViDEah~~~~~~~~~~~~ 180 (457)
.......... ..+....... ..++++|++ .+...... .....++++|+||+|.+.... +.
T Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~~--~~v~~~t~~------~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~--~~-- 147 (201)
T smart00487 84 KVVGLYGGDSKR----EQLRKLESGK--TDILVTTPG------RLLDLLENDLLELSNVDLVILDEAHRLLDGG--FG-- 147 (201)
T ss_pred EEEEEeCCcchH----HHHHHHhcCC--CCEEEeChH------HHHHHHHcCCcCHhHCCEEEEECHHHHhcCC--cH--
Confidence 2222222211 1122222221 255555544 33333222 234458899999999987532 33
Q ss_pred HHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHc
Q 012728 181 YRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 181 ~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
..+..+.... ++.+++++|||+++..........
T Consensus 148 -~~~~~~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 148 -DQLEKLLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred -HHHHHHHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3444444444 478899999999877655444433
No 145
>COG4889 Predicted helicase [General function prediction only]
Probab=99.67 E-value=6.1e-16 Score=153.35 Aligned_cols=309 Identities=19% Similarity=0.238 Sum_probs=173.6
Q ss_pred CCCCHHHHHHHHHHHcC----CCEEEEcCCCchhhHHHHHhh-hcCCCeEEEEcchHHHHHHHHHHHHH---cCCceeEe
Q 012728 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA-LAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~l~~-l~~~~~~lvl~P~~~L~~q~~~~~~~---~~~~~~~~ 108 (457)
.+|||+|++|+.+..+| ...=+.+.+|+|||++.+-.+ -....++|+++|+.+|..|..+.+.. +.+....+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 46999999999998865 245677899999999876322 11248999999999999999999876 33444444
Q ss_pred cCCCcHHHH-----------------HHHHHHh--hcCCCcccEEEECCCcccCchhHHHHHhhh--hcCCccEEEEecc
Q 012728 109 SSTQTMQVK-----------------TKIYEDL--DSGKPSLRLLYVTPELTATPGFMSKLKKIH--SRGLLNLVAIDEA 167 (457)
Q Consensus 109 ~~~~~~~~~-----------------~~~~~~~--~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~--~~~~l~~lViDEa 167 (457)
++....+.. ..+.... .......-++++ |+..+..+.... -+..+++||.|||
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs------TYQSl~~i~eAQe~G~~~fDliicDEA 313 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS------TYQSLPRIKEAQEAGLDEFDLIICDEA 313 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE------cccchHHHHHHHHcCCCCccEEEecch
Confidence 433211110 0000000 011122334344 444443343222 2445899999999
Q ss_pred ccccc---cCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhH---HHHHH----HHcCCCCCeEEecCCCCCc------
Q 012728 168 HCISS---WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV---QKDVM----ESLCLQNPLVLKSSFNRPN------ 231 (457)
Q Consensus 168 h~~~~---~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~------ 231 (457)
|+... -|.+ ...+.++.. -......+.+.|||||---. ..... ....+.+...+...+.+-+
T Consensus 314 HRTtGa~~a~dd-~saFt~vHs-~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~ 391 (1518)
T COG4889 314 HRTTGATLAGDD-KSAFTRVHS-DQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVE 391 (1518)
T ss_pred hccccceecccC-cccceeecC-cchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHH
Confidence 99742 1100 000000000 00001244678899964211 00000 0011112112211222111
Q ss_pred ------eEEEEEEeC---------------chhhHHHHH------HHHH-Hhc--------------CCccEEEEeCCcc
Q 012728 232 ------LFYEVRYKD---------------LLDDAYADL------CSVL-KAN--------------GDTCAIVYCLERT 269 (457)
Q Consensus 232 ------i~~~~~~~~---------------~~~~~~~~l------~~~l-~~~--------------~~~~~iIf~~s~~ 269 (457)
....+.-.+ ...-.++.. ..-| +.. +..++|-||.+.+
T Consensus 392 rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~ 471 (1518)
T COG4889 392 RDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIK 471 (1518)
T ss_pred hhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhH
Confidence 011111111 000011111 1111 111 2246889999999
Q ss_pred cHHHHHHHHHh-------------CCC--ceEeecCCCCHHHHHHHHHH---HhcCCceEEEEeccccccCCCCCccEEE
Q 012728 270 TCDELSAYLSA-------------GGI--SCAAYHAGLNDKARSSVLDD---WISSRKQVVVATVAFGMGIDRKDVRLVC 331 (457)
Q Consensus 270 ~~~~l~~~L~~-------------~g~--~~~~~~~~~~~~~r~~~~~~---f~~g~~~vLvaT~~~~~Gldip~v~~Vi 331 (457)
+.+.+++.+.. .++ ++....|.|...+|...++. |...+++||--..++++|||+|..+.||
T Consensus 472 tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsVi 551 (1518)
T COG4889 472 TSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVI 551 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEE
Confidence 88888776642 233 44556678998888665543 3457899999999999999999999999
Q ss_pred EecCCCCHHHHHHHhcccCCCC
Q 012728 332 HFNIPKSMEAFYQESGRAGRDQ 353 (457)
Q Consensus 332 ~~~~p~s~~~~~Qr~GRagR~g 353 (457)
++++-.++-+.+|.+||+.|-.
T Consensus 552 Ff~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 552 FFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred EecCchhHHHHHHHHHHHHHhC
Confidence 9999999999999999999953
No 146
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.67 E-value=3.7e-16 Score=117.15 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.6
Q ss_pred HHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC
Q 012728 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (457)
Q Consensus 273 ~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~ 352 (457)
.+++.|+..++.+..+||+++.++|..+++.|++|...||++|+++++|+|+|++++||.+++|++...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46788888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 012728 353 Q 353 (457)
Q Consensus 353 g 353 (457)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 147
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.63 E-value=3.7e-13 Score=139.86 Aligned_cols=164 Identities=18% Similarity=0.145 Sum_probs=103.0
Q ss_pred EEEEeccCChh-HHHHHHHHcCCCC---Ce--EEecCCCCCceEEEEEE----eC-chhhHH----HHHHHHHHhcCCcc
Q 012728 196 ILALTATAAPK-VQKDVMESLCLQN---PL--VLKSSFNRPNLFYEVRY----KD-LLDDAY----ADLCSVLKANGDTC 260 (457)
Q Consensus 196 ~v~lSAT~~~~-~~~~~~~~~~~~~---~~--~~~~~~~~~~i~~~~~~----~~-~~~~~~----~~l~~~l~~~~~~~ 260 (457)
+|++|||+++. ....+...+|+.+ .. .+.++++..+....+.. .. ...+.. ..+.+++. . ++.
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~-~gg 536 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-K-HKG 536 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-c-CCC
Confidence 68899998763 3455667788763 22 22334433222111111 11 112223 33444444 3 445
Q ss_pred EEEEeCCcccHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHh----cCCceEEEEeccccccCCCCC--ccEEEEe
Q 012728 261 AIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGIDRKD--VRLVCHF 333 (457)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~r~~~~~~f~----~g~~~vLvaT~~~~~Gldip~--v~~Vi~~ 333 (457)
++|+++|....+.+++.|... +.. ...++. ..|..+++.|+ .|+..||++|..+.+|||+|+ ++.||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999998753 333 344553 24667787776 467889999999999999987 6889988
Q ss_pred cCCC----C--------------------------HHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 334 NIPK----S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 334 ~~p~----s--------------------------~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
.+|. + ...+.|.+||.-|....--+++++++.
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 8764 1 123578999999986443345555544
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.62 E-value=1.6e-15 Score=132.67 Aligned_cols=158 Identities=23% Similarity=0.238 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHc-------CCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecC
Q 012728 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~-------~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 110 (457)
+|+++|.+++..+.+ .+++++.+|||+|||.+++..+.....++++++|+..|+.|+.+.+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999884 5789999999999999887544443339999999999999999999664433222110
Q ss_pred CCc-----H----HHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-------HhhhhcCCccEEEEeccccccccC
Q 012728 111 TQT-----M----QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-------KKIHSRGLLNLVAIDEAHCISSWG 174 (457)
Q Consensus 111 ~~~-----~----~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-------~~~~~~~~l~~lViDEah~~~~~~ 174 (457)
... . ...............+..+++.+...+......... .........++||+||||+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCCHH
Confidence 000 0 000000000111122345554444333221111000 001122347899999999975411
Q ss_pred CCCHHHHHHHHHHHHhCCCccEEEEeccCC
Q 012728 175 HDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (457)
Q Consensus 175 ~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~ 204 (457)
....+.. .+...+++|||||.
T Consensus 163 --------~~~~i~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 163 --------SYREIIE-FKAAFILGLTATPF 183 (184)
T ss_dssp --------HHHHHHH-SSCCEEEEEESS-S
T ss_pred --------HHHHHHc-CCCCeEEEEEeCcc
Confidence 1233333 66788999999985
No 149
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.62 E-value=1.3e-14 Score=140.97 Aligned_cols=104 Identities=20% Similarity=0.226 Sum_probs=94.3
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCc-eEEEEeccccccCCCCCccEEEEecC
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNI 335 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldip~v~~Vi~~~~ 335 (457)
.+.++++|+.-.+....+.++|..+|+....+.|.....+|..+...|+..++ -.|++|.+.+-|||+...+.||+||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 46789999998889999999999999999999999999999999999997554 46899999999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCCceEEE
Q 012728 336 PKSMEAFYQESGRAGRDQLPSKSLL 360 (457)
Q Consensus 336 p~s~~~~~Qr~GRagR~g~~g~~~~ 360 (457)
.|++..-.|...||.|-|+...+.+
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtv 1147 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTV 1147 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceee
Confidence 9999999999999999998765443
No 150
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.62 E-value=1.4e-13 Score=143.87 Aligned_cols=165 Identities=21% Similarity=0.204 Sum_probs=103.9
Q ss_pred EEEEeccCChhHH-HHHHHHcCCCCCe-EE--ecCCCCCceEEEE---EEeC-----chhhHHHHHHHHHHhcCCccEEE
Q 012728 196 ILALTATAAPKVQ-KDVMESLCLQNPL-VL--KSSFNRPNLFYEV---RYKD-----LLDDAYADLCSVLKANGDTCAIV 263 (457)
Q Consensus 196 ~v~lSAT~~~~~~-~~~~~~~~~~~~~-~~--~~~~~~~~i~~~~---~~~~-----~~~~~~~~l~~~l~~~~~~~~iI 263 (457)
+|++|||+.+... ..+....+..... .. ..+++........ .... ...+....+.++++..++ +++|
T Consensus 406 ~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~lv 484 (654)
T COG1199 406 VVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVLV 484 (654)
T ss_pred EEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEEE
Confidence 8899999887543 3344444444433 11 2222222211111 1111 112233344455555554 7999
Q ss_pred EeCCcccHHHHHHHHHhCCCc-eEeecCCCCHHHHHHHHHHHhcCCc-eEEEEeccccccCCCCCc--cEEEEecCCC--
Q 012728 264 YCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDV--RLVCHFNIPK-- 337 (457)
Q Consensus 264 f~~s~~~~~~l~~~L~~~g~~-~~~~~~~~~~~~r~~~~~~f~~g~~-~vLvaT~~~~~Gldip~v--~~Vi~~~~p~-- 337 (457)
|++|....+.+++.+...... ....+|..+ +...++.|..+.- .++|+|..+++|||+|+- +.||..++|.
T Consensus 485 lF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 485 LFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred EeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 999999999999999876553 344555443 3477888876544 899999999999999974 7788888775
Q ss_pred ----------------------------CHHHHHHHhcccCCCCCCceEEEEecc
Q 012728 338 ----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 338 ----------------------------s~~~~~Qr~GRagR~g~~g~~~~~~~~ 364 (457)
.+..+.|.+||+-|.....-.+++++.
T Consensus 562 p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 562 PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 345679999999996544444444444
No 151
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.60 E-value=4.6e-14 Score=143.55 Aligned_cols=135 Identities=16% Similarity=0.204 Sum_probs=108.5
Q ss_pred HHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC--ceEEEEeccccc
Q 012728 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGM 320 (457)
Q Consensus 245 ~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLvaT~~~~~ 320 (457)
|+..|.-+|+. ..+.++|||+.-......|..+|+-+|+-...+.|....++|+.++++|..+. .-.+++|...+.
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggv 1340 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGV 1340 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCcc
Confidence 44444444433 25678999999999999999999999999999999999999999999998764 335889999999
Q ss_pred cCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccchHHHHHHHHHhccc
Q 012728 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (457)
Q Consensus 321 Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 379 (457)
|||+-..+.||+||..||+..-.|.-.||.|.|+.-.+.+|-.-.+...-..|+++...
T Consensus 1341 GiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkkanq 1399 (1958)
T KOG0391|consen 1341 GINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKANQ 1399 (1958)
T ss_pred ccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhhhH
Confidence 99999999999999999999999999999998887766655444444444556655543
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=8.7e-13 Score=138.13 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=58.8
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhhhc----CC--CeEEEEcchHHHHHHHHHHHHHc
Q 012728 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~----~~--~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
.|+|..++|.|.+.+..+. +++++++.+|||+|||++.+.+++. .+ .++++.+.|.+-..|..+++++.
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 4789988999999887665 5789999999999999998877764 23 68999999999989999999883
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.59 E-value=1.2e-13 Score=129.55 Aligned_cols=108 Identities=17% Similarity=0.166 Sum_probs=93.7
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC-CceE-EEEeccccccCCCCCccEEEEecC
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQV-VVATVAFGMGIDRKDVRLVCHFNI 335 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-LvaT~~~~~Gldip~v~~Vi~~~~ 335 (457)
.-+.|||.........+.-.|.+.|++|+.+-|+|++..|...++.|.+. .+.| |++-.+.+..+|+-..++|+.+|+
T Consensus 638 t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP 717 (791)
T KOG1002|consen 638 TAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP 717 (791)
T ss_pred chhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc
Confidence 34678998888888888889999999999999999999999999999865 5654 788899999999999999999999
Q ss_pred CCCHHHHHHHhcccCCCCCC--ceEEEEeccc
Q 012728 336 PKSMEAFYQESGRAGRDQLP--SKSLLYYGMD 365 (457)
Q Consensus 336 p~s~~~~~Qr~GRagR~g~~--g~~~~~~~~~ 365 (457)
-|++..-+|...|..|-|+. -+++.|+-.+
T Consensus 718 WWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 718 WWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 99999999999999999974 4556665444
No 154
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=6e-13 Score=136.91 Aligned_cols=121 Identities=23% Similarity=0.222 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccccc
Q 012728 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (457)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 321 (457)
.|+..+.+.+.. ..+.|+||-+.|.+..+.++..|.+.|++...+++....++-..+-+.=+ ...|-|||++++||
T Consensus 612 eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAGRG 689 (1112)
T PRK12901 612 EKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAGRG 689 (1112)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcCCC
Confidence 555666555544 36789999999999999999999999999888888765555444433322 34589999999999
Q ss_pred CCCC--------CccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 322 IDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 322 ldip--------~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
-||. +==+||-...+.|..--.|-.||+||.|.+|.+..|++-+|
T Consensus 690 TDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 690 TDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9996 23578889999999999999999999999999988877654
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.49 E-value=4.7e-12 Score=131.02 Aligned_cols=107 Identities=22% Similarity=0.194 Sum_probs=76.7
Q ss_pred EEEEeCCcccHHHHHHHHHhC----C--CceEeecCCCCHHHHHHHHHHH----------------------hc----CC
Q 012728 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 308 (457)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~----g--~~~~~~~~~~~~~~r~~~~~~f----------------------~~----g~ 308 (457)
.+|-+++++.+-.++..|-.. + +.+..||+..+...|..+++.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 477788888888888877654 2 3477899999877777666543 11 35
Q ss_pred ceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCC--ceEEEEeccchHHHH
Q 012728 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP--SKSLLYYGMDDRRRM 370 (457)
Q Consensus 309 ~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~--g~~~~~~~~~~~~~~ 370 (457)
..|+|+|++++.|+|+ +.+.+|- -|.++.+.+|++||+.|.|.. +..-+++...+.+.+
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~~--~~~~~~sliQ~aGR~~R~~~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAIA--DPSSMRSIIQLAGRVNRHRLEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeeee--ccCcHHHHHHHhhcccccccCCCCCCcEEEeHhHHHHh
Confidence 6799999999999998 4555554 366799999999999998753 233344444555444
No 156
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.44 E-value=1.2e-12 Score=108.70 Aligned_cols=135 Identities=29% Similarity=0.326 Sum_probs=84.3
Q ss_pred CCEEEEcCCCchhhHHHHHhhhc-----CCCeEEEEcchHHHHHHHHHHHHHcC---CceeEecCCCcHHHHHHHHHHhh
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~-----~~~~~lvl~P~~~L~~q~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 125 (457)
+++++.+|||+|||..++..+.. ..++++|++|++.++.|+.+.+.... ................ .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~ 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE------K 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH------H
Confidence 46899999999999887755543 35899999999999999998888754 4444444443322221 1
Q ss_pred cCCCcccEEEECCCcccCchhHHHHHh-hhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012728 126 SGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 126 ~~~~~~~i~~~t~~~i~t~~~~~~l~~-~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
.......++++|++.+.. .+.. ......++++|+||+|.+..... .... ........+..+++++||||
T Consensus 75 ~~~~~~~i~i~t~~~~~~-----~~~~~~~~~~~~~~iiiDE~h~~~~~~~--~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 75 LLSGKTDIVVGTPGRLLD-----ELERLKLSLKKLDLLILDEAHRLLNQGF--GLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HhcCCCCEEEECcHHHHH-----HHHcCCcchhcCCEEEEeCHHHHhhcch--HHHH--HHHHhhCCccceEEEEeccC
Confidence 111235666666653321 1111 11234588999999999865331 1110 11233344578899999996
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.39 E-value=1.7e-11 Score=119.82 Aligned_cols=103 Identities=12% Similarity=0.129 Sum_probs=84.4
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh--cCCceE-EEEeccccccCCCCCccEEEEec
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI--SSRKQV-VVATVAFGMGIDRKDVRLVCHFN 334 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~--~g~~~v-LvaT~~~~~Gldip~v~~Vi~~~ 334 (457)
..+++|...-......+...+++.|.....+||....++|+.+++.|. +|..+| |++-.+.+.|+|+-..+|+|..|
T Consensus 746 keK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvD 825 (901)
T KOG4439|consen 746 KEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVD 825 (901)
T ss_pred cceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEe
Confidence 344455444444455666778888999999999999999999999997 354555 67778899999999999999999
Q ss_pred CCCCHHHHHHHhcccCCCCCCceEEE
Q 012728 335 IPKSMEAFYQESGRAGRDQLPSKSLL 360 (457)
Q Consensus 335 ~p~s~~~~~Qr~GRagR~g~~g~~~~ 360 (457)
+=|++.-=.|...|.-|.|+...+++
T Consensus 826 lHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 826 LHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred cccCHHHHHHHHHHHHHhcccCceEE
Confidence 99999999999999999998776554
No 158
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.32 E-value=1.2e-10 Score=126.58 Aligned_cols=117 Identities=20% Similarity=0.208 Sum_probs=100.2
Q ss_pred HHHHHHHHH-Hh--cCCc--cEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcC--CceEEEEecc
Q 012728 245 AYADLCSVL-KA--NGDT--CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVA 317 (457)
Q Consensus 245 ~~~~l~~~l-~~--~~~~--~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g--~~~vLvaT~~ 317 (457)
+...+.+++ .. ..+. +++||++.......+...|...++....++|.++.+.|...++.|.++ ..-+++++.+
T Consensus 693 k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ka 772 (866)
T COG0553 693 KLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKA 772 (866)
T ss_pred HHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecc
Confidence 444555555 11 2344 899999999999999999999998899999999999999999999986 4556888899
Q ss_pred ccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE
Q 012728 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 318 ~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~ 361 (457)
.+.|+|+-..++||++|+.+++....|...|+.|.|+...+.++
T Consensus 773 gg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~ 816 (866)
T COG0553 773 GGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVY 816 (866)
T ss_pred cccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEE
Confidence 99999999999999999999999999999999999987765444
No 159
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.31 E-value=4.9e-11 Score=119.86 Aligned_cols=113 Identities=15% Similarity=0.135 Sum_probs=94.6
Q ss_pred HHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhC----------------------CCceEeecCCCCHHHHHHHHHHH
Q 012728 249 LCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDW 304 (457)
Q Consensus 249 l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~----------------------g~~~~~~~~~~~~~~r~~~~~~f 304 (457)
|+++|+. .-+.+.|||..+......+..+|... |...+.+.|..+...|....+.|
T Consensus 1131 LleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~F 1210 (1567)
T KOG1015|consen 1131 LLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEF 1210 (1567)
T ss_pred HHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHh
Confidence 4455443 24678999999999999998888631 34567889999999999999999
Q ss_pred hcCC---c-eEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEE
Q 012728 305 ISSR---K-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (457)
Q Consensus 305 ~~g~---~-~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~ 361 (457)
.+-. . -.||+|.+.+.|||+-.++-||+||..|++.--.|.+=|+-|.|+..-+++|
T Consensus 1211 Ndp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1211 NDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred cCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 8632 2 2699999999999999999999999999999999999999999987776665
No 160
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.24 E-value=1.5e-08 Score=97.61 Aligned_cols=237 Identities=14% Similarity=0.145 Sum_probs=158.8
Q ss_pred CCCcccCchhHHHHH--------hhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC----------------
Q 012728 137 TPELTATPGFMSKLK--------KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---------------- 192 (457)
Q Consensus 137 t~~~i~t~~~~~~l~--------~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~---------------- 192 (457)
+..++++|--+..+. ....++.+.++|+|.||.+.-.+ +..+..+-..++..|
T Consensus 132 SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN---W~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 132 SDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN---WEHVLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred CCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh---HHHHHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 455677776554432 23345668999999999985311 111222222222222
Q ss_pred ------CccEEEEeccCChhHHHHHHHHcC-CCCCeEEecC-----------CCCCceEEEEEEeCc---hhhHHH----
Q 012728 193 ------DVPILALTATAAPKVQKDVMESLC-LQNPLVLKSS-----------FNRPNLFYEVRYKDL---LDDAYA---- 247 (457)
Q Consensus 193 ------~~~~v~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~i~~~~~~~~~---~~~~~~---- 247 (457)
-+|.+++|+...++....+..... ....+.+... ...++++..+..... .+..++
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 247999999999998665554221 1111122111 122233333332211 112222
Q ss_pred HHHHHHH-hcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc--ccccCCC
Q 012728 248 DLCSVLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDR 324 (457)
Q Consensus 248 ~l~~~l~-~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~--~~~Gldi 324 (457)
.++.-+. ....+.+|||++|.-+--++.+.|++.+++...+|-..+..+-......|.+|+.++|+.|.= .=+-..+
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 2333344 556678999999999999999999999999999999999999999999999999999999973 3445678
Q ss_pred CCccEEEEecCCCCHHHHHHHhcccCCCCC------CceEEEEeccchHHHHHHHHHh
Q 012728 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQL------PSKSLLYYGMDDRRRMEFILSK 376 (457)
Q Consensus 325 p~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~------~g~~~~~~~~~~~~~~~~i~~~ 376 (457)
.+++.||.|++|..+.-|-..++-.+.... ...+.++|+.-|.-.+++|+-.
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 889999999999999988777765554432 5789999999998888877633
No 161
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.21 E-value=1.5e-09 Score=109.99 Aligned_cols=281 Identities=16% Similarity=0.174 Sum_probs=162.3
Q ss_pred CEEEEcCCCchhhHHHHHhhh----cCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCCCc
Q 012728 55 DCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPS 130 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~l----~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (457)
-.++.+|+|||||.+..-+.. ....++++++-.++|+.+..++++..+...-......... .....+.
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~--------~i~~~~~ 122 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDY--------IIDGRPY 122 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccc--------ccccccc
Confidence 367899999999966543332 2478999999999999999999998655321111111000 0000001
Q ss_pred ccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHH-------HHHHHHHHhCCCccEEEEeccC
Q 012728 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-------RKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 131 ~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
-+++++ -..+.++. ....+++++|||||+-..+.. -|.+.. ..+..+.+. ...+|++-|++
T Consensus 123 ~rLivq-------IdSL~R~~-~~~l~~yDvVIIDEv~svL~q--L~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~l 190 (824)
T PF02399_consen 123 DRLIVQ-------IDSLHRLD-GSLLDRYDVVIIDEVMSVLNQ--LFSPTMRQREEVDNLLKELIRN--AKTVIVMDADL 190 (824)
T ss_pred CeEEEE-------ehhhhhcc-cccccccCEEEEehHHHHHHH--HhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCC
Confidence 122221 11222221 112345899999999776541 122222 223333332 45689999999
Q ss_pred ChhHHHHHHHHcCCCCCe-EEecCCCCCce---EEEEEE------------------------------------eCchh
Q 012728 204 APKVQKDVMESLCLQNPL-VLKSSFNRPNL---FYEVRY------------------------------------KDLLD 243 (457)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i---~~~~~~------------------------------------~~~~~ 243 (457)
.....+.+.. +...+.+ ++...+..+.. ...+.. .....
T Consensus 191 n~~tvdFl~~-~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (824)
T PF02399_consen 191 NDQTVDFLAS-CRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDET 269 (824)
T ss_pred CHHHHHHHHH-hCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchh
Confidence 9988765554 4333333 22222111110 000000 00001
Q ss_pred hHHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCC
Q 012728 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (457)
Q Consensus 244 ~~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gld 323 (457)
.-+..|..-|. .++++-||++|...++.+++.....+.++..++|.-+..+. +.| ++++|++=|+++..|++
T Consensus 270 tF~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W--~~~~VviYT~~itvG~S 341 (824)
T PF02399_consen 270 TFFSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW--KKYDVVIYTPVITVGLS 341 (824)
T ss_pred hHHHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc--cceeEEEEeceEEEEec
Confidence 12222333232 46678899999999999999999888899999887665522 223 57889999999999999
Q ss_pred CCCc--cEEEEecCC----CCHHHHHHHhcccCCCCCCceEEEEeccc
Q 012728 324 RKDV--RLVCHFNIP----KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (457)
Q Consensus 324 ip~v--~~Vi~~~~p----~s~~~~~Qr~GRagR~g~~g~~~~~~~~~ 365 (457)
+... +-++-|=-| .++.+..|++||+-.-. ....+++++..
T Consensus 342 f~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 342 FEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred cchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 8654 334444222 35667899999996554 45566666543
No 162
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.21 E-value=1.7e-11 Score=98.30 Aligned_cols=133 Identities=17% Similarity=0.092 Sum_probs=72.4
Q ss_pred cCCCEEEEcCCCchhhHHHHH----hhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcC
Q 012728 52 SGRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l----~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (457)
+|+-.++-..+|+|||.-.+- -.+.++.++|||.|||.++.++.+.++...+... ........ .+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~--t~~~~~~~---------~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFH--TNARMRTH---------FG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEE--STTSS-------------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccC--ceeeeccc---------cC
Confidence 455567888999999965433 2455799999999999999999999987543322 11111100 01
Q ss_pred CCcccEEEECCCcccCchh-HHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012728 128 KPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 128 ~~~~~i~~~t~~~i~t~~~-~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
. ++..+.+.+. ...+.+.....+++++|+||||....+.-.++ ..+... .......+|++|||||-.
T Consensus 72 ~--------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~r---g~l~~~-~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 S--------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAAR---GYLREL-AESGEAKVIFMTATPPGS 139 (148)
T ss_dssp S--------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHH---HHHHHH-HHTTS-EEEEEESS-TT-
T ss_pred C--------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhh---eeHHHh-hhccCeeEEEEeCCCCCC
Confidence 1 1113344443 33345555667899999999998643221011 112222 233457899999999865
Q ss_pred H
Q 012728 207 V 207 (457)
Q Consensus 207 ~ 207 (457)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.17 E-value=2e-08 Score=102.70 Aligned_cols=318 Identities=19% Similarity=0.183 Sum_probs=186.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHHHHHHH----HHcCCceeEecC
Q 012728 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGL----KEKGIAGEFLSS 110 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q~~~~~----~~~~~~~~~~~~ 110 (457)
.++|+=.+.+..+.-+..-+.-+.||-|||+++.+|+.-. +..+-++...--|+.--.+++ ..+|..+.....
T Consensus 78 g~~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~ 157 (822)
T COG0653 78 GMRHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILA 157 (822)
T ss_pred CCChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccC
Confidence 3556666667666666667999999999999999987543 667777887788877544443 347888888888
Q ss_pred CCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH---HhhhhcCCccEEEEeccccccc----------cCCCC
Q 012728 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISS----------WGHDF 177 (457)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l---~~~~~~~~l~~lViDEah~~~~----------~~~~~ 177 (457)
......+...+. .++.++|.--+.-.-....+ ..-..+..+.+-|+||+|.++= ++...
T Consensus 158 ~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~ 229 (822)
T COG0653 158 GMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAED 229 (822)
T ss_pred CCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccccc
Confidence 887777666554 66777765543321111112 1112233477889999988741 21111
Q ss_pred -HHHHHHHHHHHHhCC---------CccEEEEeccCChh-----------------------------------------
Q 012728 178 -RPSYRKLSSLRNYLP---------DVPILALTATAAPK----------------------------------------- 206 (457)
Q Consensus 178 -~~~~~~l~~~~~~~~---------~~~~v~lSAT~~~~----------------------------------------- 206 (457)
-..|..+..+...+. ..+.+.+|-.--..
T Consensus 230 ~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVr 309 (822)
T COG0653 230 SSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVR 309 (822)
T ss_pred CchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEe
Confidence 123444444443221 11222222210000
Q ss_pred -----------------------HHHHHHHHcC-----------------------------------------CCCCeE
Q 012728 207 -----------------------VQKDVMESLC-----------------------------------------LQNPLV 222 (457)
Q Consensus 207 -----------------------~~~~~~~~~~-----------------------------------------~~~~~~ 222 (457)
..+.+...-+ +..-.+
T Consensus 310 d~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l~v 389 (822)
T COG0653 310 DGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGLDV 389 (822)
T ss_pred cCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCCce
Confidence 0000000000 000111
Q ss_pred EecCCCCCceEEEEE--EeCchhhHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHH
Q 012728 223 LKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (457)
Q Consensus 223 ~~~~~~~~~i~~~~~--~~~~~~~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~ 298 (457)
+..+.++|.+..... .......|+..+.+.++. ..+.++||-+.+.+..+.+.+.|.+.|++-..++..-...+-.
T Consensus 390 v~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~ 469 (822)
T COG0653 390 VVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAE 469 (822)
T ss_pred eeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHHH
Confidence 112222222211110 011124666666666654 3678999999999999999999999999987887766644433
Q ss_pred HHHHHHhcCC-ceEEEEeccccccCCCCCcc-----------EEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccch
Q 012728 299 SVLDDWISSR-KQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (457)
Q Consensus 299 ~~~~~f~~g~-~~vLvaT~~~~~Gldip~v~-----------~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~~ 366 (457)
.+.+ .|+ ..|=|||+++++|-||.--. +||-..--.|-.---|-.||+||.|.+|.+..|++-.|
T Consensus 470 Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 470 IIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred HHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 3332 333 34789999999999985222 34444444455556799999999999998887766443
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.12 E-value=2.6e-08 Score=106.83 Aligned_cols=282 Identities=18% Similarity=0.176 Sum_probs=152.0
Q ss_pred CCEEEEcCCCchhhHHHHHhh-----hcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCC
Q 012728 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~-----l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (457)
+..+++=-||||||++....+ ....+.+++|+-.++|-.|..+.+.+++..........+... ....+...
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~---Lk~~l~~~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSE---LKELLEDG- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHH---HHHHHhcC-
Confidence 468999999999998755433 234789999999999999999999987554333222222222 22333333
Q ss_pred CcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHH
Q 012728 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (457)
Q Consensus 129 ~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~ 208 (457)
.-.++++|...+.....-. ......++--+||+||||+- +.| ..-..+...++++..++||+||-....
T Consensus 350 -~~~ii~TTIQKf~~~~~~~--~~~~~~~~~ivvI~DEaHRS-Q~G-------~~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKED--ELELLKRKNVVVIIDEAHRS-QYG-------ELAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcc--cccccCCCcEEEEEechhhc-ccc-------HHHHHHHHHhccceEEEeeCCcccccc
Confidence 3567777766543321110 00011112236888999984 334 233445677788999999999865433
Q ss_pred HHH-HHHcCCC-CCeEEecCCCCC---ceEEEEE-EeCch-----h----------------------------------
Q 012728 209 KDV-MESLCLQ-NPLVLKSSFNRP---NLFYEVR-YKDLL-----D---------------------------------- 243 (457)
Q Consensus 209 ~~~-~~~~~~~-~~~~~~~~~~~~---~i~~~~~-~~~~~-----~---------------------------------- 243 (457)
..- ...++-. +...+....... .+.|... ..... .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 320 1111100 001111110000 1111111 00000 0
Q ss_pred ----hHHHHHHHHHH--hcCCccEEEEeCCcccHHHHHHHHHhCCC---------c-e-------------EeecCCCCH
Q 012728 244 ----DAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGGI---------S-C-------------AAYHAGLND 294 (457)
Q Consensus 244 ----~~~~~l~~~l~--~~~~~~~iIf~~s~~~~~~l~~~L~~~g~---------~-~-------------~~~~~~~~~ 294 (457)
.....+.+.++ ...+.++++.+.++..+..+++....... . + ...|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 00011111111 22445677777777755555544332210 0 0 0001222 1
Q ss_pred HHHHHHHHHH--hcCCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC
Q 012728 295 KARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (457)
Q Consensus 295 ~~r~~~~~~f--~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~ 352 (457)
..+.....+| .....++||.++++-.|.|-|.+.. +..|-|.---..+|.+-|+.|.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccC
Confidence 2223334443 3567999999999999999996554 5566777777889999999995
No 165
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.08 E-value=8.5e-10 Score=104.32 Aligned_cols=156 Identities=18% Similarity=0.088 Sum_probs=90.0
Q ss_pred HHHHHHHHHHc-------------CCCEEEEcCCCchhhHHHHHhhh---cC-----CCeEEEEcchHHHHHHHHHHHHH
Q 012728 42 KQLDAIQAVLS-------------GRDCFCLMPTGGGKSMCYQIPAL---AK-----PGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 42 ~Q~~~i~~~~~-------------~~~~lv~a~TGsGKT~~~~l~~l---~~-----~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
+|.+++.+++. .+.+++...+|+|||...+..+. .. ...+||++|. .+..+|..++..
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 68888877642 25688888999999987664432 11 1259999999 788899999998
Q ss_pred cCC----ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCccc---CchhHHHHHhhhhcCCccEEEEecccccccc
Q 012728 101 KGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (457)
Q Consensus 101 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~---t~~~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (457)
... ......+.. ..............++++|.+.+. .+.....+.. ..+++||+||+|.+.+.
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 642 233333222 111122233345777777777665 1122222222 33899999999999654
Q ss_pred CCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHc
Q 012728 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 174 ~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
. .........+....++++||||..+...++...+
T Consensus 150 ~-------s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l 184 (299)
T PF00176_consen 150 D-------SKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLL 184 (299)
T ss_dssp T-------SHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHH
T ss_pred c-------ccccccccccccceEEeeccccccccccccccch
Confidence 4 2222233335567789999999877656555544
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.64 E-value=1.2e-06 Score=84.02 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=95.9
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc--ccccCCCCCccEEEEecC
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNI 335 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~--~~~Gldip~v~~Vi~~~~ 335 (457)
...+|||.++.-+--++.+++++.+++...+|-..+...-....+.|..|..+||+-|.= .-+--++.+|+.||.|.+
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecC
Confidence 445899999999999999999999988888887777777777888899999999999974 445788999999999999
Q ss_pred CCCHHHH---HHHhcccCCCC----CCceEEEEeccchHHHHHHHH
Q 012728 336 PKSMEAF---YQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFIL 374 (457)
Q Consensus 336 p~s~~~~---~Qr~GRagR~g----~~g~~~~~~~~~~~~~~~~i~ 374 (457)
|.+|.-| +-+.||+.-.| ....|.++|++-|.-.+..++
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~iv 677 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIV 677 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhh
Confidence 9998655 66777765444 235788899988887777665
No 167
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.63 E-value=2.7e-07 Score=83.77 Aligned_cols=132 Identities=21% Similarity=0.228 Sum_probs=86.3
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc---CCCeEEEEcchHHHHHHHHHHHHH----c
Q 012728 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----K 101 (457)
Q Consensus 29 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~---~~~~~lvl~P~~~L~~q~~~~~~~----~ 101 (457)
+.....|+. |++.|.-+.-.+.+|+ ++.+.||-|||++..+++.. .+..|=|++....||..-.+.+.. +
T Consensus 69 a~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 69 AARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp HHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 333445655 8888988887776765 99999999999988877653 377888889999999876666544 7
Q ss_pred CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHh---hhhcCCccEEEEecccccc
Q 012728 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~---~~~~~~l~~lViDEah~~~ 171 (457)
|+.+...........+...+. .+|+++|..-+.-.-....+.. ......++++||||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999998888877655554443 5687777654432211111211 1123568899999999884
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.58 E-value=2.4e-05 Score=78.34 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=95.5
Q ss_pred CccEEEEeCCcccHHHHHHHHHhCCC------------------ceEeecCCCCHHHHHHHHHHHhcC---CceEEEEec
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAGGI------------------SCAAYHAGLNDKARSSVLDDWISS---RKQVVVATV 316 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~g~------------------~~~~~~~~~~~~~r~~~~~~f~~g---~~~vLvaT~ 316 (457)
+.++|||..+......+.+.|.+..+ +...+.|..+..+|++++++|.+. .+-++++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45789999988888888888876532 223567778889999999999863 346889999
Q ss_pred cccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCCCCceEEEEeccc----hHHHHHHHHHhcc
Q 012728 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD----DRRRMEFILSKNQ 378 (457)
Q Consensus 317 ~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g~~~~~~~~~----~~~~~~~i~~~~~ 378 (457)
+..-|||+=..+-+|.||..|++.--.|.+-|.-|-|+...|++|---- +.+.+.+.+++.+
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqG 864 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQG 864 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhcc
Confidence 9999999988889999999999999999999999999988887764332 4445555554443
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.57 E-value=2.1e-07 Score=94.04 Aligned_cols=301 Identities=19% Similarity=0.149 Sum_probs=170.7
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCchhhHHHH---HhhhcC-----CCeEEEEcchHHHHHHHHHHHHHc-CCceeEecCCC
Q 012728 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK-----PGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQ 112 (457)
Q Consensus 42 ~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~---l~~l~~-----~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~ 112 (457)
+-.+.+..+..+.-+++.+.||.|||.-+. +-.+.. ...+.+-.|++..+.-..+++..- +.... ...
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g---~tv 458 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVG---ETC 458 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhc---ccc
Confidence 444556666677778899999999996543 333222 234677778887776666665441 10000 000
Q ss_pred cHHHHHHHHHHhhcCCCcccEEEECCC-----cccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHH
Q 012728 113 TMQVKTKIYEDLDSGKPSLRLLYVTPE-----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (457)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~i~~~t~~-----~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~ 187 (457)
.. +++..-++|. +.+|.+-+....... +..+.++++||.|...-.+. | ....+..+
T Consensus 459 gy---------------~vRf~Sa~prpyg~i~fctvgvllr~~e~g-lrg~sh~i~deiherdv~~d-f--ll~~lr~m 519 (1282)
T KOG0921|consen 459 GY---------------NVRFDSATPRPYGSIMFCTVGVLLRMMENG-LRGISHVIIDEIHERDVDTD-F--VLIVLREM 519 (1282)
T ss_pred cc---------------cccccccccccccceeeeccchhhhhhhhc-ccccccccchhhhhhccchH-H--HHHHHHhh
Confidence 00 0111111111 344544444443322 23378999999998644331 1 12334555
Q ss_pred HHhCCCccEEEEeccCChhHHHHHHHHc--------------------CCCCCeEEecCCCCCceE------EEEE----
Q 012728 188 RNYLPDVPILALTATAAPKVQKDVMESL--------------------CLQNPLVLKSSFNRPNLF------YEVR---- 237 (457)
Q Consensus 188 ~~~~~~~~~v~lSAT~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~i~------~~~~---- 237 (457)
+...+...++++|||+..+....++... ...-..+......+...+ ....
T Consensus 520 ~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~ 599 (1282)
T KOG0921|consen 520 ISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGR 599 (1282)
T ss_pred hccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhccc
Confidence 6666778888888887655432221110 000000000000000000 0000
Q ss_pred ----------------------EeCchhhHHHHHHHHHHh-cCCccEEEEeCCcccHHHHHHHHHhC-------CCceEe
Q 012728 238 ----------------------YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------GISCAA 287 (457)
Q Consensus 238 ----------------------~~~~~~~~~~~l~~~l~~-~~~~~~iIf~~s~~~~~~l~~~L~~~-------g~~~~~ 287 (457)
.....-...+.+...++. .-.+-+++|.+--...-.|..+|... .+....
T Consensus 600 n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp 679 (1282)
T KOG0921|consen 600 NMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILP 679 (1282)
T ss_pred ccccccChhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhccccc
Confidence 000000122222222222 23456888888877777777776543 356788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEecCC------------------CCHHHHHHHhccc
Q 012728 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP------------------KSMEAFYQESGRA 349 (457)
Q Consensus 288 ~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p------------------~s~~~~~Qr~GRa 349 (457)
.|+.....+..++.+....|..+++++|.+....+-+.++.+||..+.. .|.....||.||+
T Consensus 680 ~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~ 759 (1282)
T KOG0921|consen 680 LHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRA 759 (1282)
T ss_pred chhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccC
Confidence 9999988888888888889999999999999999999888888754432 2567789999999
Q ss_pred CCCCCCceEEEEeccc
Q 012728 350 GRDQLPSKSLLYYGMD 365 (457)
Q Consensus 350 gR~g~~g~~~~~~~~~ 365 (457)
||. ++|.|..+....
T Consensus 760 grv-R~G~~f~lcs~a 774 (1282)
T KOG0921|consen 760 GRV-RPGFCFHLCSRA 774 (1282)
T ss_pred cee-cccccccccHHH
Confidence 997 578887776543
No 170
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.53 E-value=6.9e-07 Score=83.30 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCchhhHHHHHhhhc----CCC-----eEEEEcchHHHHHHHHHHHHH
Q 012728 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~-----~~lvl~P~~~L~~q~~~~~~~ 100 (457)
|+|. ++|.|.+.+.. +.+|+++++.||||+|||++++.|++. .+. +++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6787 59999995544 456889999999999999999998863 233 799999999999888888887
Q ss_pred cC
Q 012728 101 KG 102 (457)
Q Consensus 101 ~~ 102 (457)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.53 E-value=6.9e-07 Score=83.30 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=56.2
Q ss_pred cCCCCCCHHHHHHHHH----HHcCCCEEEEcCCCchhhHHHHHhhhc----CCC-----eEEEEcchHHHHHHHHHHHHH
Q 012728 34 FGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~----~~~~~~~lv~a~TGsGKT~~~~l~~l~----~~~-----~~lvl~P~~~L~~q~~~~~~~ 100 (457)
|+|. ++|.|.+.+.. +.+|+++++.||||+|||++++.|++. .+. +++|.++|..+..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 6787 59999995544 456889999999999999999998863 233 799999999999888888887
Q ss_pred cC
Q 012728 101 KG 102 (457)
Q Consensus 101 ~~ 102 (457)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 53
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.53 E-value=5.2e-06 Score=87.03 Aligned_cols=79 Identities=15% Similarity=0.050 Sum_probs=48.7
Q ss_pred ccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHH-HhCCCccEEEEeccCChh---
Q 012728 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPK--- 206 (457)
Q Consensus 131 ~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~-~~~~~~~~v~lSAT~~~~--- 206 (457)
..+++.||.++.+. .+........+..|||||||++.+.. . +.-+.++. ...+..-+.+|||.|...
T Consensus 8 ggi~~~T~rIl~~D----lL~~ri~~~~itgiiv~~Ahr~~~~~-~----eaFI~rlyr~~n~~gfIkafSdsP~~~~~g 78 (814)
T TIGR00596 8 GGIFSITSRILVVD----LLTGIIPPELITGILVLRADRIIESS-Q----EAFILRLYRQKNKTGFIKAFSDNPEAFTMG 78 (814)
T ss_pred CCEEEEechhhHhH----HhcCCCCHHHccEEEEeecccccccc-c----HHHHHHHHHHhCCCcceEEecCCCcccccc
Confidence 46777777766442 23455566678999999999996421 1 23333333 334455688999998763
Q ss_pred --HHHHHHHHcCCC
Q 012728 207 --VQKDVMESLCLQ 218 (457)
Q Consensus 207 --~~~~~~~~~~~~ 218 (457)
....+.+.+++.
T Consensus 79 ~~~l~~vmk~L~i~ 92 (814)
T TIGR00596 79 FSPLETKMRNLFLR 92 (814)
T ss_pred hHHHHHHHHHhCcC
Confidence 344555555543
No 173
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.53 E-value=3.1e-07 Score=78.43 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=74.8
Q ss_pred HHHHHhcCCccEEEEeCCcccHHHHHHHHHhCCC--ceEeecCCCCHHHHHHHHHHHhcCCceEEEEec--cccccCCCC
Q 012728 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (457)
Q Consensus 250 ~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~--~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~--~~~~Gldip 325 (457)
.++++..+ +.++||++|....+.+.+.++..+. ....+.. +..++..+++.|++++..||+++. .+++|+|+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34445444 7799999999999999999987532 1222222 355678889999999999999999 999999999
Q ss_pred C--ccEEEEecCCCC------------------------------HHHHHHHhcccCCCCCCceEEEEecc
Q 012728 326 D--VRLVCHFNIPKS------------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 364 (457)
Q Consensus 326 ~--v~~Vi~~~~p~s------------------------------~~~~~Qr~GRagR~g~~g~~~~~~~~ 364 (457)
+ ++.||..++|.. .....|.+||+-|..+.--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 6 788999998841 12337889999998654344444443
No 174
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.39 E-value=3.4e-06 Score=76.89 Aligned_cols=164 Identities=17% Similarity=0.106 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHc----------CCCEEEEcCCCchhhHHHHHhh----hcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 38 QFRDKQLDAIQAVLS----------GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~l~~----l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
.++..|.+++-.+.. +.-+++--.||.||-....-.+ +.-..+.|+++.+..|..+..+.|++.|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 478899998866541 2346666699999985332222 22245799999999999999999999876
Q ss_pred ceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCc--------hhHHHHHhhhhcCCccEEEEeccccccccCC
Q 012728 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (457)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~--------~~~~~l~~~~~~~~l~~lViDEah~~~~~~~ 175 (457)
....+......... .......-++++|.-.+.+. .++..+.+..-...=.+||+||||.......
T Consensus 117 ~~i~v~~l~~~~~~-------~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-------DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-------cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 64433322221100 01111234566665543322 2333333332222234899999999965321
Q ss_pred C---CHHHHHHHHHHHHhCCCccEEEEeccCChhHH
Q 012728 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (457)
Q Consensus 176 ~---~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~ 208 (457)
. -...=.....+.+.+|+.+++.+|||...+..
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEPR 225 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCCc
Confidence 0 11112345667888999999999999776643
No 175
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.34 E-value=7.6e-06 Score=86.07 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=54.5
Q ss_pred CceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCCC--CC-------ceEE-EEeccchHHHHHHHHHhc
Q 012728 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LP-------SKSL-LYYGMDDRRRMEFILSKN 377 (457)
Q Consensus 308 ~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~g--~~-------g~~~-~~~~~~~~~~~~~i~~~~ 377 (457)
..+.+++-+++.+|.|-|++-.++-+....|...-.|.+||..|-. +. .... ++.+....+..+.+.++.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 5789999999999999999999999998999999999999999842 11 1222 334455566666666655
Q ss_pred cc
Q 012728 378 QS 379 (457)
Q Consensus 378 ~~ 379 (457)
..
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 33
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.06 E-value=1.5e-05 Score=69.97 Aligned_cols=60 Identities=22% Similarity=0.255 Sum_probs=41.2
Q ss_pred CCCHHHHHHHHHHHcCC--CEEEEcCCCchhhHHHH--Hhhh-cCCCeEEEEcchHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~--l~~l-~~~~~~lvl~P~~~L~~q~~~~ 97 (457)
+|++.|.+++..++... -.++.+|.|+|||.+.. ...+ ..+.++++++||...+.+..+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh
Confidence 47899999999997543 36678999999996532 1122 3478999999998887764443
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.00 E-value=2.3e-06 Score=88.35 Aligned_cols=250 Identities=15% Similarity=0.171 Sum_probs=127.3
Q ss_pred CCCHHHHHHHHHHHc-CCCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHHHHHHHHHHHHc----CCceeE
Q 012728 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGLKEK----GIAGEF 107 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L~~q~~~~~~~~----~~~~~~ 107 (457)
.+.|.|.+.+..+.. ..++++.+|||+|||.+|.+++... +.++++++|..+|+..-.+.+... |.+...
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 355666665544433 3578999999999999998776532 678999999999999877776652 333443
Q ss_pred ecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHH----hhhhcCCccEEEEecccccccc-CCCCHHHHH
Q 012728 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK----KIHSRGLLNLVAIDEAHCISSW-GHDFRPSYR 182 (457)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~----~~~~~~~l~~lViDEah~~~~~-~~~~~~~~~ 182 (457)
..+....+... ..+..++++||+ .+..+. .......+.++|+||.|++.+. |.-++-...
T Consensus 1007 ~tgd~~pd~~~---------v~~~~~~ittpe------k~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivs 1071 (1230)
T KOG0952|consen 1007 LTGDVTPDVKA---------VREADIVITTPE------KWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVS 1071 (1230)
T ss_pred ccCccCCChhh---------eecCceEEcccc------cccCccccccchhhhccccceeecccccccCCCcceEEEEee
Confidence 33333222110 112455555555 333332 2223345788999999998763 211100000
Q ss_pred HHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcCCCCCeEEecCCCCCceEEEEEEeCch--------hhHHHHHHHHH
Q 012728 183 KLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL--------DDAYADLCSVL 253 (457)
Q Consensus 183 ~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~l~~~l 253 (457)
....+-... +..+.+++|--+.+. .++.+|++..+..-+ .+..+| ....+...... ..+-+-....+
T Consensus 1072 r~n~~s~~t~~~vr~~glsta~~na--~dla~wl~~~~~~nf-~~svrp-vp~~~~i~gfp~~~~cprm~smnkpa~qai 1147 (1230)
T KOG0952|consen 1072 RMNYISSQTEEPVRYLGLSTALANA--NDLADWLNIKDMYNF-RPSVRP-VPLEVHIDGFPGQHYCPRMMSMNKPAFQAI 1147 (1230)
T ss_pred ccccCccccCcchhhhhHhhhhhcc--HHHHHHhCCCCcCCC-Cccccc-CCceEeecCCCchhcchhhhhcccHHHHHH
Confidence 000000111 134455555444333 577888887655111 111111 11111111110 01111223334
Q ss_pred Hh-cCCccEEEEeCCcccHHHHHHHHH----hCCCceEeecCCCCHHHHHHHHHHHhcCC
Q 012728 254 KA-NGDTCAIVYCLERTTCDELSAYLS----AGGISCAAYHAGLNDKARSSVLDDWISSR 308 (457)
Q Consensus 254 ~~-~~~~~~iIf~~s~~~~~~l~~~L~----~~g~~~~~~~~~~~~~~r~~~~~~f~~g~ 308 (457)
+. .+..+++||+.++.....-+.-|- ...-+..+++.+ ..+-+.++...++..
T Consensus 1148 k~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1148 KTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTN 1205 (1230)
T ss_pred hcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccc
Confidence 44 467789999998876544443332 222223344443 444445555444443
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.93 E-value=1.6e-05 Score=69.38 Aligned_cols=55 Identities=20% Similarity=0.220 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC-----CCeEEEEcchHHH
Q 012728 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIAL 90 (457)
Q Consensus 36 ~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~-----~~~~lvl~P~~~L 90 (457)
+...++.|..++.++.+.+-+++.+|.|||||+.++..++.. -.++++.-|..+.
T Consensus 2 I~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 2 IKPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ----SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred ccCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 345789999999999987889999999999998877665532 4578888888754
No 179
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.88 E-value=0.00051 Score=70.26 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccCCC--CCCce-----------EEEEeccchHHHHHHH
Q 012728 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD--QLPSK-----------SLLYYGMDDRRRMEFI 373 (457)
Q Consensus 307 g~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRagR~--g~~g~-----------~~~~~~~~~~~~~~~i 373 (457)
...+.+++-.++-+|.|=|+|=.++-.....|..+=+|.+||..|- ++.|. -.+++...+....+.+
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 4578999999999999999999999999999999999999999994 22222 2345667777777777
Q ss_pred HHhcccC
Q 012728 374 LSKNQSK 380 (457)
Q Consensus 374 ~~~~~~~ 380 (457)
..+....
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7765543
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.88 E-value=0.00012 Score=72.58 Aligned_cols=80 Identities=19% Similarity=0.197 Sum_probs=64.8
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh----hcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 29 ~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~----l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.+.. +|+.+++.-|..|+.+++...=.++++|+|+|||.+..-.+ -...+.+||++|+.--+.|..+.+.+-|++
T Consensus 402 ~~s~-~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLK 480 (935)
T KOG1802|consen 402 RFSV-PNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLK 480 (935)
T ss_pred hhcC-CCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCce
Confidence 4443 68889999999999999999889999999999996533111 224889999999999999999999888877
Q ss_pred eeEec
Q 012728 105 GEFLS 109 (457)
Q Consensus 105 ~~~~~ 109 (457)
+..+.
T Consensus 481 VvRl~ 485 (935)
T KOG1802|consen 481 VVRLC 485 (935)
T ss_pred Eeeee
Confidence 66543
No 181
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.86 E-value=4.4e-05 Score=78.47 Aligned_cols=102 Identities=13% Similarity=0.025 Sum_probs=89.3
Q ss_pred ccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHhcCC-ce-EEEEeccccccCCCCCccEEEEecCC
Q 012728 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQ-VVVATVAFGMGIDRKDVRLVCHFNIP 336 (457)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~~~Gldip~v~~Vi~~~~p 336 (457)
.+++||+.-...+..+...|...++....+.|.|+...|.+.+..|..+. .. .+++..+.+.|+|+-.+.+|+..|+-
T Consensus 540 ~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~ 619 (674)
T KOG1001|consen 540 PKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPW 619 (674)
T ss_pred CceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchh
Confidence 37899998888888888888888888999999999999999999998543 22 47889999999999999999999999
Q ss_pred CCHHHHHHHhcccCCCCCCceEEE
Q 012728 337 KSMEAFYQESGRAGRDQLPSKSLL 360 (457)
Q Consensus 337 ~s~~~~~Qr~GRagR~g~~g~~~~ 360 (457)
+|+..--|.+-|+.|-|+.-.+.+
T Consensus 620 wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 620 WNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred cChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999998765544
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.84 E-value=9.2e-05 Score=72.84 Aligned_cols=62 Identities=23% Similarity=0.275 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
.+.+-|.+|+....+.++ .++.+|+|+|||.+... -++.++.++||.+||..-+....+++.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 577899999999988755 67899999999976443 234568999999999999888888754
No 183
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.84 E-value=4e-05 Score=69.41 Aligned_cols=63 Identities=33% Similarity=0.426 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCC-EEEEcCCCchhhHH--HHHhhh---------cCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMC--YQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~--~~l~~l---------~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
++++.|.+|+..+++... .+++||+|||||.+ .++..+ ..+.++++++|+..-+.+..+.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 378999999999999888 99999999999943 333333 4478999999999999998888877
No 184
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.82 E-value=0.00047 Score=60.77 Aligned_cols=81 Identities=23% Similarity=0.364 Sum_probs=62.4
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHc---CCCEEEEcCCCchhhHHHHHhh----hcC-CCeEEEEcc
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPA----LAK-PGIVLVVSP 86 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~---~~~~lv~a~TGsGKT~~~~l~~----l~~-~~~~lvl~P 86 (457)
.+|.+..-++.++=.+.. ++- +|+.|.+....+.+ |+|.+.++-+|.|||.+- +|+ +.. ...+.+++|
T Consensus 3 ~~w~p~~~P~wLl~E~e~--~il-iR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp 78 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES--NIL-IRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP 78 (229)
T ss_pred CCCCchhChHHHHHHHHc--Cce-eeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC
Confidence 578888888888776664 554 99999999988885 578999999999999663 333 333 456778888
Q ss_pred hHHHHHHHHHHHHH
Q 012728 87 LIALMENQVIGLKE 100 (457)
Q Consensus 87 ~~~L~~q~~~~~~~ 100 (457)
++|..|....+..
T Consensus 79 -k~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 79 -KALLEQMRQMLRS 91 (229)
T ss_pred -HHHHHHHHHHHHH
Confidence 5898998887776
No 185
>PF13245 AAA_19: Part of AAA domain
Probab=97.73 E-value=9.4e-05 Score=53.71 Aligned_cols=53 Identities=30% Similarity=0.360 Sum_probs=36.5
Q ss_pred HHHHHHcCCC-EEEEcCCCchhhHHHH--Hh-hhcC----CCeEEEEcchHHHHHHHHHHH
Q 012728 46 AIQAVLSGRD-CFCLMPTGGGKSMCYQ--IP-ALAK----PGIVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 46 ~i~~~~~~~~-~lv~a~TGsGKT~~~~--l~-~l~~----~~~~lvl~P~~~L~~q~~~~~ 98 (457)
++...+.+.. +++.+|+|||||...+ +. .+.. +.++++++|++..+.+..+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 3443333444 5559999999994433 11 2222 678999999999999888877
No 186
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.73 E-value=0.00037 Score=73.36 Aligned_cols=63 Identities=13% Similarity=0.089 Sum_probs=47.2
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhhhcC-C--CeEEEEcchHHHHHH
Q 012728 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALMEN 93 (457)
Q Consensus 30 l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~--~l~~l~~-~--~~~lvl~P~~~L~~q 93 (457)
..+..++ .+++.|.+++..+..++-+++.+++|+|||.+. ++.++.. + ..+++++||-.-+..
T Consensus 316 ~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 316 VEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred HHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 3443565 499999999999988888999999999999643 2333333 3 578889999776653
No 187
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.70 E-value=0.00042 Score=71.73 Aligned_cols=141 Identities=24% Similarity=0.190 Sum_probs=90.4
Q ss_pred CCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchhhHH--HHHhhh-cCCCeEEEEcchHHHHHHH
Q 012728 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC--YQIPAL-AKPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 19 ~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~--~~l~~l-~~~~~~lvl~P~~~L~~q~ 94 (457)
+..+.+.+.+.. +..++.-|++|+..++..+ ..++.+-+|+|||.+ .++-+| ..++++|..+=|..-+...
T Consensus 655 ~~~~~p~~~~~~-----~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNI 729 (1100)
T KOG1805|consen 655 SKVLIPKIKKII-----LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNI 729 (1100)
T ss_pred ccccCchhhHHH-----HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHH
Confidence 344455555431 2358899999998888765 578899999999954 334444 4588899999998888888
Q ss_pred HHHHHHcCCceeEecCCCcHHHHH-----------HHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEE
Q 012728 95 VIGLKEKGIAGEFLSSTQTMQVKT-----------KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (457)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lV 163 (457)
.-.++..++....+.......... ..+..+...-.+..++.+|.--+..|-| ..+.+|+.|
T Consensus 730 LiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf--------~~R~FD~cI 801 (1100)
T KOG1805|consen 730 LIKLKGFGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF--------VNRQFDYCI 801 (1100)
T ss_pred HHHHhccCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--------hccccCEEE
Confidence 888998877755544433211111 1112222223346666666555544433 233489999
Q ss_pred Eeccccccc
Q 012728 164 IDEAHCISS 172 (457)
Q Consensus 164 iDEah~~~~ 172 (457)
||||-.+..
T Consensus 802 iDEASQI~l 810 (1100)
T KOG1805|consen 802 IDEASQILL 810 (1100)
T ss_pred Ecccccccc
Confidence 999988754
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.69 E-value=0.00074 Score=69.30 Aligned_cols=76 Identities=21% Similarity=0.109 Sum_probs=55.1
Q ss_pred HHHHHHHHHhcCCCC-CCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhhhcC-----CCeEEEEcchHHHHHHHH
Q 012728 24 EALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQV 95 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~-~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~--~l~~l~~-----~~~~lvl~P~~~L~~q~~ 95 (457)
..+...|...|+... ..++|+.|+...+.++-.++.+++|+|||.+. ++..+.+ ..++.+.+||..-+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 456666666665542 35899999999999888999999999999653 3333321 347888999988777766
Q ss_pred HHHH
Q 012728 96 IGLK 99 (457)
Q Consensus 96 ~~~~ 99 (457)
+.+.
T Consensus 217 e~~~ 220 (615)
T PRK10875 217 ESLG 220 (615)
T ss_pred HHHH
Confidence 6554
No 189
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.69 E-value=0.00044 Score=56.92 Aligned_cols=77 Identities=21% Similarity=0.284 Sum_probs=53.4
Q ss_pred eecCCCCHHHHHHHHHHHhcCC-ceEEEEeccccccCCCCC--ccEEEEecCCCC-------------------------
Q 012728 287 AYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPKS------------------------- 338 (457)
Q Consensus 287 ~~~~~~~~~~r~~~~~~f~~g~-~~vLvaT~~~~~Gldip~--v~~Vi~~~~p~s------------------------- 338 (457)
.+.-+.+..+...+++.|++.. ..||+++..+++|+|+|+ ++.||..++|..
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~ 105 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDF 105 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhH
Confidence 3333444556788889998654 379999988999999997 578888887741
Q ss_pred ------HHHHHHHhcccCCCCCCceEEEEec
Q 012728 339 ------MEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 339 ------~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
.....|.+||+-|..+.--++++++
T Consensus 106 ~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 106 VSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 2334788899999765333344443
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.67 E-value=0.00072 Score=60.84 Aligned_cols=56 Identities=20% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhh----cC-CCeEEEEcchHHH
Q 012728 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AK-PGIVLVVSPLIAL 90 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l----~~-~~~~lvl~P~~~L 90 (457)
++...+..|...+.++.++..+++.+|+|+|||+.+...++ .. -.++++.-|+.+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 55667789999999998888889999999999987654333 22 2456666676543
No 191
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.62 E-value=0.00043 Score=57.08 Aligned_cols=68 Identities=25% Similarity=0.313 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCc---eEEEEecc--ccccCCCCC--ccEEEEecCCCC------------------------------
Q 012728 296 ARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPKS------------------------------ 338 (457)
Q Consensus 296 ~r~~~~~~f~~g~~---~vLvaT~~--~~~Gldip~--v~~Vi~~~~p~s------------------------------ 338 (457)
+...+++.|++..- .||+++.- +++|||+|+ ++.||..++|..
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 44677888886433 69998887 999999997 578998887741
Q ss_pred -HHHHHHHhcccCCCCCCceEEEEec
Q 012728 339 -MEAFYQESGRAGRDQLPSKSLLYYG 363 (457)
Q Consensus 339 -~~~~~Qr~GRagR~g~~g~~~~~~~ 363 (457)
.....|.+||+-|..+.--++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 1234789999999864433444443
No 192
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.61 E-value=0.00024 Score=68.61 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=35.3
Q ss_pred CEEEEcCCCchhhHHHHHhh--h---cCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQIPA--L---AKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~--l---~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
-++|.+.+|||||+.++-.+ + ..+..++++++..+|.....+.+..
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 36889999999998765222 2 3478899999999998877776665
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.57 E-value=0.00083 Score=68.75 Aligned_cols=61 Identities=18% Similarity=0.121 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHcCCCEEEEcCCCchhhHHH--HHhhhcC------CCeEEEEcchHHHHHHHHHHHHH
Q 012728 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 40 ~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~--~l~~l~~------~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.++|+.++..++.++-.++.+++|+|||.+. ++..+.. ..++++.+||-.-+....+....
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 4899999999999988999999999999643 2333321 15799999998777665555443
No 194
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.53 E-value=2.7e-05 Score=79.07 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=54.2
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCCCceEeecCCCCHHHHHHHHHHHh-cC--CceEEEEecccccc
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SS--RKQVVVATVAFGMG 321 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~-~g--~~~vLvaT~~~~~G 321 (457)
.+.+++||..-.+....+..++...+ ....+.|..+--+|+..+.+|. .| ..-.|.+|.+.+.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 56789999999999999999998888 7889999999999999999998 33 34478899887765
No 195
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.0015 Score=60.10 Aligned_cols=55 Identities=24% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCHHHHHHHH----HHHcCCCEEEEcCCCchhhHHHH-Hh--hhcCCCeEEEEcchHHHHHHH
Q 012728 39 FRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 39 ~~~~Q~~~i~----~~~~~~~~lv~a~TGsGKT~~~~-l~--~l~~~~~~lvl~P~~~L~~q~ 94 (457)
+.+.|..++. ++-+++++++.||+|+|||..+. +. +...+..+ +..+..+|+.+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v-~f~~~~~L~~~l 149 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRV-LFTRTTDLVQKL 149 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCce-eeeeHHHHHHHH
Confidence 3456666663 33467899999999999995433 22 23344445 444556666553
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.30 E-value=0.00076 Score=54.91 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=12.8
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
++.+++.||+|+|||....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999997643
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.27 E-value=0.0012 Score=68.57 Aligned_cols=71 Identities=21% Similarity=0.154 Sum_probs=55.9
Q ss_pred CCCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHH--H-hhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeE
Q 012728 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~--l-~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~ 107 (457)
..+++.|.+++..++.. ..+++.||+|+|||.+.. + .++..+.++++++||..-+.+..+++...+.....
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvR 230 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVR 230 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEE
Confidence 35789999999999876 568899999999995433 2 23445789999999999999999998875544433
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.26 E-value=0.00068 Score=63.06 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=48.0
Q ss_pred HHhcCCCCCCHHHHHHHHHHHcCC--CEEEEcCCCchhhHHHHHhhhcC------CCeEEEEcchHHHH
Q 012728 31 RWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALM 91 (457)
Q Consensus 31 ~~~~g~~~~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~~~l~~l~~------~~~~lvl~P~~~L~ 91 (457)
++.+|+...+-.|.-|+..++... =+.+.++.|||||+.++-+.++. -.++||.-|+..+.
T Consensus 221 ~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 221 QEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 356899988889999999998764 36778899999998887776653 45688888887765
No 199
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.26 E-value=0.0014 Score=61.82 Aligned_cols=36 Identities=17% Similarity=0.177 Sum_probs=24.1
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHH
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~ 89 (457)
.++|+++|+|+|||..+-+.+-..+....-+..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~ 84 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS 84 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc
Confidence 489999999999998775544444444444444433
No 200
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0085 Score=58.01 Aligned_cols=56 Identities=18% Similarity=0.122 Sum_probs=36.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-C-ccEEEEeccCChhHHHHHHHHcC
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
...++|+||++.+... -...+..+..+..... . ..++.+|||.......++...+.
T Consensus 253 ~~~DlVLIDTaGr~~~----~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~ 310 (388)
T PRK12723 253 KDFDLVLVDTIGKSPK----DFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCCEEEEcCCCCCcc----CHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhc
Confidence 4589999999998642 1112345555555432 3 46789999999887776666553
No 201
>PRK06526 transposase; Provisional
Probab=97.23 E-value=0.0012 Score=60.18 Aligned_cols=45 Identities=20% Similarity=0.122 Sum_probs=27.0
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHHHHH
Q 012728 48 QAVLSGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 48 ~~~~~~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L~~q 93 (457)
.++..+.++++.||+|+|||..+.- .+...+..+++. ...+++.+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~~ 140 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVAR 140 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHHH
Confidence 3344567999999999999965432 223345555443 33344443
No 202
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.19 E-value=0.0011 Score=68.26 Aligned_cols=68 Identities=26% Similarity=0.277 Sum_probs=49.9
Q ss_pred cCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchhhHHHHHhhh---c--------------C---------------
Q 012728 34 FGHAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPAL---A--------------K--------------- 77 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l---~--------------~--------------- 77 (457)
|.|. |++.|...+..++. ..+.++-.|||+|||++.+=..+ + +
T Consensus 18 fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 5665 89999998887764 47899999999999987552221 0 0
Q ss_pred -------------CCeEEEEcchHHHHHHHHHHHHHcC
Q 012728 78 -------------PGIVLVVSPLIALMENQVIGLKEKG 102 (457)
Q Consensus 78 -------------~~~~lvl~P~~~L~~q~~~~~~~~~ 102 (457)
.+++.+-+-|..-..|.++++++.+
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 2356777777777789999998843
No 203
>PRK04296 thymidine kinase; Provisional
Probab=97.14 E-value=0.001 Score=58.16 Aligned_cols=32 Identities=28% Similarity=0.144 Sum_probs=22.2
Q ss_pred CEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcc
Q 012728 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSP 86 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P 86 (457)
-.++.+|+|+|||..++-.+ ..++.+++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 36788999999996554222 234777888866
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.10 E-value=0.0054 Score=50.54 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
++.+++.||+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999996543
No 205
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.08 E-value=0.00077 Score=63.99 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh---hhc----CCCeEEEEcchHHHHHHHHHHHHH
Q 012728 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~---~l~----~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
+++-|.+++.. ..++++|.|+.|||||.+.+-- ++. ...+++++++|++.+.+..+++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 57889999988 5678999999999999765522 222 256799999999999998888877
No 206
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.08 E-value=0.002 Score=58.85 Aligned_cols=58 Identities=22% Similarity=0.279 Sum_probs=50.8
Q ss_pred HHHHHHhcCCceEEEEeccccccCCCCC--------ccEEEEecCCCCHHHHHHHhcccCCCCCCc
Q 012728 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (457)
Q Consensus 299 ~~~~~f~~g~~~vLvaT~~~~~Gldip~--------v~~Vi~~~~p~s~~~~~Qr~GRagR~g~~g 356 (457)
...+.|.+|+..|+|.+++.+.|+-+.. -++-|...+|||....+|..||+.|.|+..
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~ 117 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVS 117 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhcccccccccc
Confidence 4467899999999999999999998864 356778889999999999999999999854
No 207
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.04 E-value=0.0018 Score=62.81 Aligned_cols=55 Identities=27% Similarity=0.337 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHH------HcCCCEEEEcCCCchhhHHHH--Hhhhc-CCCeEEEEcchHHHHH
Q 012728 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (457)
Q Consensus 38 ~~~~~Q~~~i~~~------~~~~~~lv~a~TGsGKT~~~~--l~~l~-~~~~~lvl~P~~~L~~ 92 (457)
+|++-|++++..+ .++.++++.++-|+|||..+- ...+. .+..+++++||-.-|.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~ 64 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAF 64 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHH
Confidence 4788999998888 567889999999999997642 22222 3567899999865543
No 208
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.014 Score=53.01 Aligned_cols=41 Identities=20% Similarity=0.193 Sum_probs=25.0
Q ss_pred CCEEEEcCCCchhhHHHH-Hh-hhcCCCeEEEEcchHHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~-l~-~l~~~~~~lvl~P~~~L~~q~ 94 (457)
.++++.||+|+|||..+. +. .+...+..++..+..+|..+.
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l 144 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRL 144 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHH
Confidence 579999999999995432 21 222333444555556666553
No 209
>PRK06921 hypothetical protein; Provisional
Probab=96.89 E-value=0.017 Score=53.20 Aligned_cols=40 Identities=20% Similarity=0.173 Sum_probs=24.0
Q ss_pred CCCEEEEcCCCchhhHHHH-H-h-hhcC-CCeEEEEcchHHHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ-I-P-ALAK-PGIVLVVSPLIALMEN 93 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l-~-~l~~-~~~~lvl~P~~~L~~q 93 (457)
+.++++.|++|+|||..+. + - +..+ +..+++ ++..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y-~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLY-FPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEE-EEHHHHHHH
Confidence 5679999999999995432 2 1 2233 444444 444555443
No 210
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0039 Score=56.78 Aligned_cols=34 Identities=21% Similarity=0.125 Sum_probs=24.3
Q ss_pred HHHHHHHHHHc------CCCEEEEcCCCchhhHHHHHhhh
Q 012728 42 KQLDAIQAVLS------GRDCFCLMPTGGGKSMCYQIPAL 75 (457)
Q Consensus 42 ~Q~~~i~~~~~------~~~~lv~a~TGsGKT~~~~l~~l 75 (457)
+|..++..+.+ .-+.++.+|+|+|||.++++.+-
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar 79 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFAR 79 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHH
Confidence 56666655542 23789999999999988765443
No 211
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.87 E-value=0.0059 Score=64.70 Aligned_cols=56 Identities=18% Similarity=0.127 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHH--Hhhhc-CCCeEEEEcchHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMEN 93 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~--l~~l~-~~~~~lvl~P~~~L~~q 93 (457)
.+++.|.+++..++.+ +-+++.+++|+|||...- ..++. .+..+++++||-.-+..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHH
Confidence 4899999999999875 557899999999995432 22222 37789999999765543
No 212
>PRK08727 hypothetical protein; Validated
Probab=96.86 E-value=0.0079 Score=54.40 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=19.6
Q ss_pred CCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEc
Q 012728 54 RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVS 85 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~ 85 (457)
+.+++.||+|+|||-.... .+...+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3489999999999953321 1223344555543
No 213
>PRK05973 replicative DNA helicase; Provisional
Probab=96.84 E-value=0.023 Score=51.12 Aligned_cols=86 Identities=13% Similarity=0.095 Sum_probs=55.4
Q ss_pred cCCCCChHHHHHHHHHHhcCCCC----------CCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH---HhhhcCCCeEE
Q 012728 16 KNKPLHEKEALVKLLRWHFGHAQ----------FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVL 82 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~~g~~~----------~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~l 82 (457)
.....++++.+.+...+. ||.. ++| ..+....+..|.-+++.|++|+|||...+ ..+...+.+++
T Consensus 19 ~~~~~~~~~~~~~~a~~~-g~~~w~~~~~~~~~~~p-~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vl 96 (237)
T PRK05973 19 RAQNIPLHEALDRIAAEE-GFSSWSLLAAKAAATTP-AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGV 96 (237)
T ss_pred HhcCCcHHHHHHHHHHHh-ccchHHHHHHhccCCCC-HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 345678888888877774 8773 344 22233334456678899999999996544 23334577788
Q ss_pred EEcchHHHHHHHHHHHHHcCCc
Q 012728 83 VVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 83 vl~P~~~L~~q~~~~~~~~~~~ 104 (457)
+++--- -..|..+++..+|..
T Consensus 97 yfSlEe-s~~~i~~R~~s~g~d 117 (237)
T PRK05973 97 FFTLEY-TEQDVRDRLRALGAD 117 (237)
T ss_pred EEEEeC-CHHHHHHHHHHcCCC
Confidence 886433 346777778777643
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.82 E-value=0.0091 Score=51.91 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=33.7
Q ss_pred EEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
+++.+|+|+|||...+ ...+..+..+++++.. +-..+..+++..+|..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6889999999996543 3344567788888753 4556777777776553
No 215
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.016 Score=57.34 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.0
Q ss_pred CEEEEcCCCchhhHHHHHhh
Q 012728 55 DCFCLMPTGGGKSMCYQIPA 74 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~ 74 (457)
.+++.||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47999999999997765443
No 216
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.76 E-value=0.0099 Score=54.76 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=26.7
Q ss_pred CCEEEEcCCCchhhHHHHHhh-----hc-----CCCeEEEEcchHHHHHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQIPA-----LA-----KPGIVLVVSPLIALMENQVIG 97 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~-----l~-----~~~~~lvl~P~~~L~~q~~~~ 97 (457)
.+++++|+||.|||.+.---. -. ..+.+.+-+|...-....+..
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 489999999999997543111 11 124556666766544444443
No 217
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.71 E-value=0.0038 Score=51.05 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.6
Q ss_pred CCCEEEEcCCCchhhHHHHHhhhcC-CC--eEEEEcchHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l~~-~~--~~lvl~P~~~L 90 (457)
+..+++.+|+|+|||......+... .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999997664333322 22 47777776544
No 218
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.026 Score=53.54 Aligned_cols=40 Identities=23% Similarity=0.238 Sum_probs=25.2
Q ss_pred CCCEEEEcCCCchhhHHHH-H--hhhcCCCeEEEEcchHHHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l--~~l~~~~~~lvl~P~~~L~~q 93 (457)
++++++.||||+|||..+. + .++.++..| +..+..+|..+
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V-~y~t~~~l~~~ 225 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSV-IYRTADELIEI 225 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeE-EEEEHHHHHHH
Confidence 5789999999999995432 2 123334444 44555666554
No 219
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.68 E-value=0.04 Score=48.24 Aligned_cols=125 Identities=22% Similarity=0.164 Sum_probs=65.2
Q ss_pred EEEEcCCCchhhHHHH-Hhhh--cCCCeEEEEc--chHHHHHHHHHHHHH-cCCceeEecCCCcHHHHHHHHHHhhcCCC
Q 012728 56 CFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~-l~~l--~~~~~~lvl~--P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (457)
+++++|||+|||.+.. +++. .++.++.+++ ..|.=+.+|.+.+.+ +++.........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~----------------- 66 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES----------------- 66 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS-----------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcch-----------------
Confidence 6789999999996543 2221 1244444444 345455555555444 444332211111
Q ss_pred cccEEEECCCcccCch-hHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhH
Q 012728 130 SLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKV 207 (457)
Q Consensus 130 ~~~i~~~t~~~i~t~~-~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~ 207 (457)
.|. ......+.....+.++|+||-+.+... -......+..+.... |....+.+|||...+.
T Consensus 67 -------------~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 67 -------------DPAEIAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp -------------CHHHHHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred -------------hhHHHHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 111 111122222334588999999976422 223345555555554 4556788999998876
Q ss_pred HHHHHHH
Q 012728 208 QKDVMES 214 (457)
Q Consensus 208 ~~~~~~~ 214 (457)
...+...
T Consensus 130 ~~~~~~~ 136 (196)
T PF00448_consen 130 LEQALAF 136 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6544443
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=96.64 E-value=0.011 Score=53.41 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=26.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCccEEEEeccCChhHH
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQ 208 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~lSAT~~~~~~ 208 (457)
..++|++||+|.+..... .. ..+..+.+.. .+.+++++|++.++...
T Consensus 91 ~~dlLilDDi~~~~~~~~-~~---~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEE-WE---LAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred cCCEEEEeChhhhcCChH-HH---HHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 368999999998753211 11 1222222222 13456778888766543
No 221
>PLN03025 replication factor C subunit; Provisional
Probab=96.63 E-value=0.019 Score=54.62 Aligned_cols=43 Identities=21% Similarity=0.270 Sum_probs=26.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
..+++|+||+|.+.... ...+.+.....++...++++++..+.
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccc
Confidence 36799999999985422 24455555555554445556654443
No 222
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.62 E-value=0.0025 Score=54.86 Aligned_cols=41 Identities=22% Similarity=0.265 Sum_probs=24.7
Q ss_pred cCCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L~~q 93 (457)
+++++++.+|+|+|||..+.. .++.++..+ ..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v-~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSV-LFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--E-EEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcce-eEeecCceecc
Confidence 467899999999999965432 233334444 44566677654
No 223
>PRK08116 hypothetical protein; Validated
Probab=96.58 E-value=0.04 Score=50.85 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=22.9
Q ss_pred CEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q 93 (457)
.+++.|++|+|||..+... +..++..+ +..+..++..+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v-~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPV-IFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeE-EEEEHHHHHHH
Confidence 4999999999999654321 12234444 44455565554
No 224
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.57 E-value=0.017 Score=53.68 Aligned_cols=39 Identities=18% Similarity=0.128 Sum_probs=26.0
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHH-Hh--hhcC-CCeEEEEcc
Q 012728 48 QAVLSGRDCFCLMPTGGGKSMCYQ-IP--ALAK-PGIVLVVSP 86 (457)
Q Consensus 48 ~~~~~~~~~lv~a~TGsGKT~~~~-l~--~l~~-~~~~lvl~P 86 (457)
..+..|.-+++.|++|+|||.... +. +... +..+++++-
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 344567788999999999995433 22 2223 667888764
No 225
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.56 E-value=0.018 Score=62.32 Aligned_cols=58 Identities=28% Similarity=0.169 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHHcCCC-EEEEcCCCchhhHHHH--Hhhhc-CCCeEEEEcchHHHHHH
Q 012728 35 GHAQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMEN 93 (457)
Q Consensus 35 g~~~~~~~Q~~~i~~~~~~~~-~lv~a~TGsGKT~~~~--l~~l~-~~~~~lvl~P~~~L~~q 93 (457)
|+ .+++-|.+++..++.+++ +++.++.|+|||...- ..+.. .+..++.++||-.-+..
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAEN 405 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHH
Confidence 54 499999999999998654 6789999999996522 12222 37789999999765543
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.078 Score=51.04 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=33.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCccEEEEeccCChhHHHHHHHHcC
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
..++|+||-+-+... -...+..+..+... .|...++.+|||........+...+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 479999999976432 12233445454432 34445667899887766555555543
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.051 Score=49.24 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=23.1
Q ss_pred CCEEEEcCCCchhhHHHH-Hh-hh-cCCCeEEEEcchHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ-IP-AL-AKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~-l~-~l-~~~~~~lvl~P~~~L~~q 93 (457)
..+++.+++|+|||..+. +. .+ ..+..++++ +..+|...
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-TVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-EHHHHHHH
Confidence 468999999999995433 21 22 234445444 55555443
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.49 E-value=0.17 Score=49.93 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=34.6
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh--CCCccEEEEeccCChhHHHHHHHHcC
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~--~~~~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
..++|+||.+-.... -......+..+... .+....+.++||........+...+.
T Consensus 299 ~~DlVlIDt~G~~~~----d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR----DKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC----CHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 479999999966321 12223445555542 23344788999998887777766554
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=96.48 E-value=0.1 Score=49.56 Aligned_cols=50 Identities=20% Similarity=0.195 Sum_probs=31.9
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCccEEEEeccCChhHHHHH
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDV 211 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~lSAT~~~~~~~~~ 211 (457)
..++|+||.+.++.. -...+..+..+... .|+..++.++||...+.....
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 478999999998742 12333455555443 356668888998876654433
No 230
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.025 Score=52.90 Aligned_cols=76 Identities=11% Similarity=0.023 Sum_probs=39.4
Q ss_pred ccccCCCCChHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHH
Q 012728 13 QTQKNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIAL 90 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~--~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L 90 (457)
....+++.+=.++..+.+++. ....+|--++.-.| ---+.+++.+|+|+|||+.+-.-+-+ ..-+.+=+.-.+|
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI---~PPKGVLLYGPPGTGKTLLAkAVA~~-T~AtFIrvvgSEl 221 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGI---DPPKGVLLYGPPGTGKTLLAKAVANQ-TDATFIRVVGSEL 221 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCC---CCCCceEeeCCCCCcHHHHHHHHHhc-cCceEEEeccHHH
Confidence 344566666555555555553 12222222222211 12368999999999999876333332 2333333444466
Q ss_pred HH
Q 012728 91 ME 92 (457)
Q Consensus 91 ~~ 92 (457)
++
T Consensus 222 Vq 223 (406)
T COG1222 222 VQ 223 (406)
T ss_pred HH
Confidence 54
No 231
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.46 E-value=0.017 Score=57.16 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3789999999999976643
No 232
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.45 E-value=0.056 Score=54.63 Aligned_cols=116 Identities=22% Similarity=0.256 Sum_probs=74.5
Q ss_pred hHHHHHHHHH----HhcCCccEEEEeCCcccHHHHHHHHHhCCC-------ceEeecCCCCHHHHHHHHHHHh----cCC
Q 012728 244 DAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGI-------SCAAYHAGLNDKARSSVLDDWI----SSR 308 (457)
Q Consensus 244 ~~~~~l~~~l----~~~~~~~~iIf~~s~~~~~~l~~~L~~~g~-------~~~~~~~~~~~~~r~~~~~~f~----~g~ 308 (457)
..+..|...+ ..-+ +.+++|++|.+-...+.....+.|+ +-+++-..-+ -.++++.|. .|.
T Consensus 612 ~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred HHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 3444444443 3345 5599999999988888888887654 2233333333 345566665 355
Q ss_pred ceEEEE--eccccccCCCCC--ccEEEEecCCCC--------------------------------HHHHHHHhcccCCC
Q 012728 309 KQVVVA--TVAFGMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRD 352 (457)
Q Consensus 309 ~~vLva--T~~~~~Gldip~--v~~Vi~~~~p~s--------------------------------~~~~~Qr~GRagR~ 352 (457)
..+|+| -.-+++|||+.+ .+.|+..++|.. +...-|-+|||-|+
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 556655 467899999987 688998888762 12346899999998
Q ss_pred CCCceEEEEec
Q 012728 353 QLPSKSLLYYG 363 (457)
Q Consensus 353 g~~g~~~~~~~ 363 (457)
-+.=.++++++
T Consensus 768 ~~DYA~i~LlD 778 (821)
T KOG1133|consen 768 RKDYASIYLLD 778 (821)
T ss_pred hccceeEEEeh
Confidence 54333344443
No 233
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.43 E-value=0.0069 Score=53.26 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=17.1
Q ss_pred CEEEEcCCCchhhHHHHHhhhc
Q 012728 55 DCFCLMPTGGGKSMCYQIPALA 76 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~l~ 76 (457)
++++.+|+|.|||..+.+-+-+
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e 73 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANE 73 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHhc
Confidence 6999999999999766544433
No 234
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.37 E-value=0.024 Score=51.28 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=14.5
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.||+|+|||...
T Consensus 46 ~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 46 GYIYLWSREGAGRSHLL 62 (235)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57899999999999543
No 235
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.013 Score=53.46 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=41.0
Q ss_pred cCCCCCCHHHHHHHHHHH-------cCCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHHHHHHHHHHH
Q 012728 34 FGHAQFRDKQLDAIQAVL-------SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~-------~~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
|.|.-....+..++..+. .++++++.||+|+|||..+.. .++ +.+.-+.++++.+++.+....+.
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHHHHHHHHHHHHh
Confidence 344444445555444432 567999999999999964432 223 45666777788888876554433
No 236
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.36 E-value=0.048 Score=45.87 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=22.4
Q ss_pred EEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHH
Q 012728 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~ 89 (457)
+++.+|+|+|||...... ....++.++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 578999999999654322 1224677777766443
No 237
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.35 E-value=0.033 Score=53.01 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHcC----CCEEEEcCCCchhhHHHH
Q 012728 38 QFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~----~~~lv~a~TGsGKT~~~~ 71 (457)
.++|||...+..+... +..++.+|.|.|||..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 3579999999888754 358899999999996543
No 238
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.34 E-value=0.066 Score=53.91 Aligned_cols=54 Identities=20% Similarity=0.262 Sum_probs=33.4
Q ss_pred CccccccccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCchhhHHHHHh
Q 012728 4 SPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIP 73 (457)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l~ 73 (457)
++.++........|.++--++.+.+.|+.. +.++ +.+++.||.|+|||.++.+.
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~a----------------i~~~ri~~a~Lf~Gp~G~GKTT~Aril 63 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYT----------------ILNDRLAGGYLLTGIRGVGKTTSARII 63 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCceEEEECCCCCCHHHHHHHH
Confidence 344444555555566665555555555442 2233 46899999999999776543
No 239
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.30 E-value=0.25 Score=58.05 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHH--Hhhhc-CCCeEEEEcchHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALMENQV 95 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~--l~~l~-~~~~~lvl~P~~~L~~q~~ 95 (457)
.+++.|.+++..++.. +-.++.++.|+|||.+.. ..+.. .+..+++++||-.-+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~ 491 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELR 491 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 4889999999998875 457789999999996432 22333 3778999999987554433
No 240
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.28 E-value=0.022 Score=53.29 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=24.7
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC---CCeEEEEcchHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMEN 93 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~---~~~~lvl~P~~~L~~q 93 (457)
.++++++|+|+|||..+-+.+... .-+.+=++-|.+-.++
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~d 205 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTND 205 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHH
Confidence 379999999999997665444333 2234444444444433
No 241
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.27 E-value=0.081 Score=55.76 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHH----cC---CCE-EEEcCCCchhhHHH
Q 012728 40 RDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (457)
Q Consensus 40 ~~~Q~~~i~~~~----~~---~~~-lv~a~TGsGKT~~~ 70 (457)
|.-|.+.+..++ .+ .++ ++.|+||+|||++.
T Consensus 760 REeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 760 REKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred hHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 445555554433 22 244 59999999999875
No 242
>PF13173 AAA_14: AAA domain
Probab=96.25 E-value=0.023 Score=46.03 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=25.4
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEec
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSA 201 (457)
-.+|+|||+|.+.+|. ..+..+....++.++++.+.
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~ii~tgS 97 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKIILTGS 97 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceEEEEcc
Confidence 5689999999998765 56666776655666554433
No 243
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.25 E-value=0.033 Score=58.57 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=24.3
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCCh
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~ 205 (457)
..++||||+|.+.. .....++....+.+++++++|..+
T Consensus 110 ~~IL~IDEIh~Ln~---------~qQdaLL~~lE~g~IiLI~aTTen 147 (725)
T PRK13341 110 RTILFIDEVHRFNK---------AQQDALLPWVENGTITLIGATTEN 147 (725)
T ss_pred ceEEEEeChhhCCH---------HHHHHHHHHhcCceEEEEEecCCC
Confidence 56899999999743 112233444456677888877544
No 244
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.24 E-value=0.17 Score=48.59 Aligned_cols=127 Identities=19% Similarity=0.200 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCchhhHHHH-Hhh----hcCC-CeEEEEcch-HHHHHHHHHHHHH-cCCceeEecCCCcHHHHHHHHHHh
Q 012728 53 GRDCFCLMPTGGGKSMCYQ-IPA----LAKP-GIVLVVSPL-IALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDL 124 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~~----l~~~-~~~lvl~P~-~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 124 (457)
++.+.++||||.|||.+.. +++ +... ...||-.-| |-=|.+|.+.+.+ ++++..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~------------------ 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE------------------ 264 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE------------------
Confidence 5678899999999995432 222 2233 344554444 3333344444333 344332
Q ss_pred hcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC-ccEEEEeccC
Q 012728 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATA 203 (457)
Q Consensus 125 ~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~lSAT~ 203 (457)
++.+|.-+..- ...+.+.++|.||=+-+-.- -.....++..+.....+ .-.+.+|||.
T Consensus 265 ---------------vv~~~~el~~a--i~~l~~~d~ILVDTaGrs~~----D~~~i~el~~~~~~~~~i~~~Lvlsat~ 323 (407)
T COG1419 265 ---------------VVYSPKELAEA--IEALRDCDVILVDTAGRSQY----DKEKIEELKELIDVSHSIEVYLVLSATT 323 (407)
T ss_pred ---------------EecCHHHHHHH--HHHhhcCCEEEEeCCCCCcc----CHHHHHHHHHHHhccccceEEEEEecCc
Confidence 22232211111 11233468999998865311 12222445554444332 3467899999
Q ss_pred ChhHHHHHHHHcCCC
Q 012728 204 APKVQKDVMESLCLQ 218 (457)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (457)
...+.+++...+...
T Consensus 324 K~~dlkei~~~f~~~ 338 (407)
T COG1419 324 KYEDLKEIIKQFSLF 338 (407)
T ss_pred chHHHHHHHHHhccC
Confidence 999888888877543
No 245
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=96.23 E-value=0.11 Score=50.06 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.|+++.|+||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 47999999999999765
No 246
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.29 Score=47.16 Aligned_cols=54 Identities=20% Similarity=0.186 Sum_probs=30.3
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHH
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 214 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~ 214 (457)
.+.++|+||++-...- -......+..+.... +...++.+|||........+...
T Consensus 214 ~~~DlVLIDTaG~~~~----d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~ 268 (374)
T PRK14722 214 RNKHMVLIDTIGMSQR----DRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQA 268 (374)
T ss_pred cCCCEEEEcCCCCCcc----cHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHH
Confidence 3468999999965321 011123333332222 23447889999988776655443
No 247
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.16 E-value=0.066 Score=50.54 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=27.3
Q ss_pred CCCCHHHHHHHHHHH----cCC---CEEEEcCCCchhhHHH
Q 012728 37 AQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~----~~~---~~lv~a~TGsGKT~~~ 70 (457)
+.++|||..++..+. .|+ ..++.+|.|+||+..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA 43 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVA 43 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHH
Confidence 568999999998776 333 5889999999999654
No 248
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.072 Score=48.53 Aligned_cols=48 Identities=17% Similarity=0.180 Sum_probs=32.5
Q ss_pred HHHHcCC-----CEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHHHHH
Q 012728 48 QAVLSGR-----DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 48 ~~~~~~~-----~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q~~~ 96 (457)
|.+..|+ .+++.+|+|+||+..+-..+-+.+ -+.+-+.+..|+..|.-
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmG 208 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMG 208 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhc
Confidence 4445553 599999999999976544444434 56777777788776553
No 249
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.041 Score=58.26 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=25.3
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
++.+++||||+|.|.. ...+.+.+.+...|..-++++..|-+..
T Consensus 118 gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQK 161 (944)
T ss_pred CCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchh
Confidence 4578999999999853 2234555555554433333444444333
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.14 E-value=0.022 Score=46.14 Aligned_cols=31 Identities=16% Similarity=0.031 Sum_probs=19.0
Q ss_pred EEEEcCCCchhhHHHHHhhhcCCCeEEEEcc
Q 012728 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P 86 (457)
+++.||+|+|||...-..+-.-+..++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~ 31 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDG 31 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEET
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccc
Confidence 5889999999997654333333333333333
No 251
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.13 E-value=0.033 Score=60.69 Aligned_cols=56 Identities=23% Similarity=0.119 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHcC-CCEEEEcCCCchhhHHHH--Hhhh-cCCCeEEEEcchHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPAL-AKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~-~~~lv~a~TGsGKT~~~~--l~~l-~~~~~~lvl~P~~~L~~q 93 (457)
.|++-|.+++..+..+ +-+++.++.|+|||...- .-+. ..+..++.++||-.-+..
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~ 440 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEG 440 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHH
Confidence 5999999999988653 457889999999996532 2222 247789999999765544
No 252
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.12 E-value=0.034 Score=56.87 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=25.9
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhH
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~ 207 (457)
.++.+++||||+|.|.... .+.+.+.++.-+..-++++..|-+...
T Consensus 122 ~gr~KViIIDEah~Ls~~A------aNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA------FNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCceEEEEEChHhcCHHH------HHHHHHhhccCCCCceEEEEeCChHhh
Confidence 4457899999999986422 244444444444333444444443333
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.02 E-value=0.055 Score=49.89 Aligned_cols=18 Identities=17% Similarity=0.124 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.++++.+|+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 478999999999997663
No 254
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.02 E-value=0.44 Score=47.89 Aligned_cols=53 Identities=26% Similarity=0.137 Sum_probs=29.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHH
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~ 213 (457)
...++|+||.+-..... ......+..+........++.++++........+.+
T Consensus 427 ~~~DLVLIDTaG~s~~D----~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 427 RDYKLVLIDTAGMGQRD----RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred ccCCEEEecCCCcchhh----HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 34789999999764211 111223333433334456788888876555444443
No 255
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.054 Score=54.79 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=23.5
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC-ccEEEEe
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~lS 200 (457)
++.+++||||+|.+.... .+.+.+.+...|. +.+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a------~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHS------FNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHH------HHHHHHHHhccCCCeEEEEEE
Confidence 457899999999986422 3455555555553 4444433
No 256
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.98 E-value=0.029 Score=58.26 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=25.3
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
.+.+++||||+|.|.... .+.+.+.++..+..-+++|++|-
T Consensus 118 gr~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaTtd 158 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILATTD 158 (830)
T ss_pred CCceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEECC
Confidence 457899999999986522 24455555555544344455553
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=95.97 E-value=0.084 Score=48.49 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=27.0
Q ss_pred HHcCCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHH
Q 012728 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q 93 (457)
+..+.++++.||+|+|||..+... +...+..++++ +..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHH
Confidence 446789999999999999544322 22345556555 33455443
No 258
>PRK05642 DNA replication initiation factor; Validated
Probab=95.94 E-value=0.047 Score=49.35 Aligned_cols=44 Identities=27% Similarity=0.366 Sum_probs=24.3
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCChh
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPK 206 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~~ 206 (457)
.++||||++|.+..... .. ..+..+.+... +...+++|++.++.
T Consensus 98 ~d~LiiDDi~~~~~~~~-~~---~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 98 YELVCLDDLDVIAGKAD-WE---EALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred CCEEEEechhhhcCChH-HH---HHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 57999999998743111 11 22444443332 33456777776554
No 259
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.062 Score=53.73 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=26.7
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhH
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~ 207 (457)
....+++||||+|.+.... .+.+......-|..-++.+.+|-....
T Consensus 114 ~~~~KVvIIDEah~Ls~~A------~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSA------FNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred cCCceEEEEeChHhCCHHH------HHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 3457899999999986422 344555555544433444444544443
No 260
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.27 Score=47.92 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=34.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC----CCccEEEEeccCChhHHHHHHHHcC
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~----~~~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
...++|+||=+-.... -......+..+.... +...++.+|||........+...+.
T Consensus 298 ~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~ 357 (432)
T PRK12724 298 DGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYE 357 (432)
T ss_pred CCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhc
Confidence 4478999997755321 123334555555443 2346788999999877776666553
No 261
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.91 E-value=0.081 Score=52.59 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=23.3
Q ss_pred CCEEEEcCCCchhhHHHHH-h--hhcCCCeEEEEcchHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI-P--ALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l-~--~l~~~~~~lvl~P~~~L~~q 93 (457)
+.+++.||+|+|||..... . +...+.+++++.. ..+..+
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~ 183 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEH 183 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHH
Confidence 3589999999999954321 1 1233566666653 344443
No 262
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.91 E-value=0.071 Score=55.08 Aligned_cols=41 Identities=27% Similarity=0.372 Sum_probs=24.8
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEecc
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT 202 (457)
.+..+++||||+|.|.... .+.+.+.+..-|..-++++..|
T Consensus 117 ~g~~KV~IIDEah~Ls~~a------~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHS------FNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred cCCCEEEEEechHhCCHHH------HHHHHHHHHcCCCCeEEEEecC
Confidence 3557899999999986422 3555555555443333444444
No 263
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.90 E-value=0.074 Score=50.57 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=22.8
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
.++|||||+|.+.. ......+..+....+....+.++++.
T Consensus 101 ~~vliiDe~d~l~~-----~~~~~~L~~~le~~~~~~~~Ilt~n~ 140 (316)
T PHA02544 101 GKVIIIDEFDRLGL-----ADAQRHLRSFMEAYSKNCSFIITANN 140 (316)
T ss_pred CeEEEEECcccccC-----HHHHHHHHHHHHhcCCCceEEEEcCC
Confidence 57999999998722 11224455555555543344455543
No 264
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.90 E-value=0.12 Score=46.57 Aligned_cols=51 Identities=20% Similarity=0.046 Sum_probs=34.0
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
.|.-+++.+++|+|||...+ ...+..+.++++++.. +-..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e-~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ-LTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHhCC
Confidence 46778999999999996632 2233557788888854 333555666666554
No 265
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.90 E-value=0.047 Score=55.94 Aligned_cols=41 Identities=22% Similarity=0.329 Sum_probs=24.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
++.+++||||+|.+.... .+.+...+...|+.-.+++++|-
T Consensus 117 gk~KV~IIDEVh~LS~~A------~NALLKtLEEPP~~v~FILaTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS------FNALLKTLEEPPEHVKFLFATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHH------HHHHHHHHhcCCCCcEEEEEECC
Confidence 457899999999986422 24455555554543344444453
No 266
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.86 E-value=0.072 Score=53.36 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.||+|+|||...
T Consensus 149 ~~l~l~G~~G~GKThL~ 165 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL 165 (450)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999643
No 267
>PHA02533 17 large terminase protein; Provisional
Probab=95.83 E-value=0.041 Score=55.86 Aligned_cols=63 Identities=21% Similarity=0.187 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh-----hcCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~-----l~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.|+|+|.+.+..+..++-.++..+=..|||.+....+ ...+..+++++|+..-+....+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 4789999999887666666788899999996654222 23466899999999988888777764
No 268
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.74 E-value=0.053 Score=61.22 Aligned_cols=57 Identities=18% Similarity=0.173 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHH--HHhhhc-----CCCeEEEEcchHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPALA-----KPGIVLVVSPLIALMENQ 94 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~--~l~~l~-----~~~~~lvl~P~~~L~~q~ 94 (457)
.+++.|.+++..++.. +-+++.+..|+|||... ++.++. .+..++.++||-.-+...
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 5899999999999865 56889999999999763 222221 256788899997766543
No 269
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.73 E-value=0.1 Score=53.45 Aligned_cols=20 Identities=20% Similarity=0.105 Sum_probs=16.1
Q ss_pred CCEEEEcCCCchhhHHHHHh
Q 012728 54 RDCFCLMPTGGGKSMCYQIP 73 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~ 73 (457)
..+|+.+|.|+|||.++.+.
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35889999999999876543
No 270
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.73 E-value=0.047 Score=57.66 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCccEEEEeCCcccHHHHHHHHHhC----C-CceEe-ecCCCCHHHHHHHHHHHhcCCceEEEEeccc
Q 012728 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (457)
Q Consensus 245 ~~~~l~~~l~~~~~~~~iIf~~s~~~~~~l~~~L~~~----g-~~~~~-~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~ 318 (457)
.+-.+..+.-...++++++.++|..-+.++++.|++. | ..+.. |||.++.++++..+++|.+|+.+|||+|+.+
T Consensus 112 Tfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 112 TFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred HHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 3444455554556688999999999999999988764 2 44333 9999999999999999999999999999864
Q ss_pred -cccCC-CC--CccEEEEec
Q 012728 319 -GMGID-RK--DVRLVCHFN 334 (457)
Q Consensus 319 -~~Gld-ip--~v~~Vi~~~ 334 (457)
..-.| +. ..++|+.-|
T Consensus 192 L~k~~e~L~~~kFdfifVDD 211 (1187)
T COG1110 192 LSKRFEELSKLKFDFIFVDD 211 (1187)
T ss_pred HHhhHHHhcccCCCEEEEcc
Confidence 33332 22 356666554
No 271
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.73 E-value=0.067 Score=53.97 Aligned_cols=61 Identities=15% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHHHHHHH-----cC----CCEEEEcCCCchhhHHHHHhh----h---cCCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 41 DKQLDAIQAVL-----SG----RDCFCLMPTGGGKSMCYQIPA----L---AKPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 41 ~~Q~~~i~~~~-----~~----~~~lv~a~TGsGKT~~~~l~~----l---~~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
|||...+..++ .| +.+++..|=|.|||......+ + ..+..+++.++++.-+...++.++.+
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 67888777766 22 358888899999995433221 1 13578999999999999988887774
No 272
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.71 E-value=0.099 Score=46.77 Aligned_cols=39 Identities=21% Similarity=0.354 Sum_probs=24.7
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q 93 (457)
+|+++.+|+|+|||..+-..+ .....-++.+-..+|..+
T Consensus 152 knVLFyGppGTGKTm~Akala-ne~kvp~l~vkat~liGe 190 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALA-NEAKVPLLLVKATELIGE 190 (368)
T ss_pred ceeEEECCCCccHHHHHHHHh-cccCCceEEechHHHHHH
Confidence 799999999999997652211 223334555555555544
No 273
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.089 Score=52.65 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=14.8
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
.+++.||+|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999976643
No 274
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.67 E-value=0.03 Score=59.01 Aligned_cols=76 Identities=20% Similarity=0.225 Sum_probs=65.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCCCCCccEEE
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldip~v~~Vi 331 (457)
.+.+++|.++|+.-|.+.++.+++. |+++..+||+++..+|...++.+.+|+.+|+|+|.. +...+.++++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 4668999999999999888877653 688999999999999999999999999999999975 44467788888887
Q ss_pred E
Q 012728 332 H 332 (457)
Q Consensus 332 ~ 332 (457)
.
T Consensus 389 I 389 (681)
T PRK10917 389 I 389 (681)
T ss_pred E
Confidence 4
No 275
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.67 E-value=0.11 Score=50.40 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 276
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.67 E-value=0.051 Score=63.59 Aligned_cols=57 Identities=19% Similarity=0.191 Sum_probs=42.0
Q ss_pred CCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHH------HHhhhc-CCCeEEEEcchHHHHHH
Q 012728 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY------QIPALA-KPGIVLVVSPLIALMEN 93 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~------~l~~l~-~~~~~lvl~P~~~L~~q 93 (457)
..+++.|.+++..++.+ +-+++.++.|+|||... +..+.. .+..++.++||-.-+.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHH
Confidence 35899999999998865 34677899999999654 112222 36678899999766544
No 277
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.08 Score=54.54 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=25.6
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
.+.++++||||+|.+.... ++.+......-|..-.+++.+|-+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEECCchh
Confidence 3457899999999986422 34444444444443344444454333
No 278
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.63 E-value=0.51 Score=43.48 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=33.9
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcC
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
...++++||.+-+... -......+..+.... |...++.+|||........+.+.+.
T Consensus 153 ~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred CCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 3589999999976422 122334444444433 3444677999987766665655543
No 279
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.62 E-value=0.069 Score=46.04 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=69.7
Q ss_pred cCCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHH-HHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcC
Q 012728 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIAL-MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L-~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (457)
....+.+..++|.|||.+++- .++..+.+|+++-=.+-- -..-...++.++ .......+.... +.. ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~-~v~~~~~g~~~~-----~~~--~~ 92 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGG-GVEFHVMGTGFT-----WET--QD 92 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCC-CcEEEECCCCCc-----ccC--CC
Confidence 456899999999999987763 344457777777544421 111122223221 111111111000 000 00
Q ss_pred CCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhH
Q 012728 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (457)
Q Consensus 128 ~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~ 207 (457)
. .- +.-.-..-+...........+++||+||+=...++| +-+. ..+..++...|...-|.+|+--.+..
T Consensus 93 ~-~e-------~~~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~g--li~~-eevi~~L~~rp~~~evVlTGR~~p~~ 161 (191)
T PRK05986 93 R-ER-------DIAAAREGWEEAKRMLADESYDLVVLDELTYALKYG--YLDV-EEVLEALNARPGMQHVVITGRGAPRE 161 (191)
T ss_pred c-HH-------HHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCC--CccH-HHHHHHHHcCCCCCEEEEECCCCCHH
Confidence 0 00 000001123333444445679999999998888877 3333 45556666677655666676655543
No 280
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=95.61 E-value=0.14 Score=50.86 Aligned_cols=34 Identities=24% Similarity=0.030 Sum_probs=23.2
Q ss_pred cCCCEEEEcCCCchhhHHHHHhh----hcCCCeEEEEc
Q 012728 52 SGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS 85 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~~----l~~~~~~lvl~ 85 (457)
.|.=+++.|+||+|||...+-.+ ...+..+++++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45567888999999996544222 23466788887
No 281
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.61 E-value=0.07 Score=47.67 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=25.0
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC--CCccEEEEeccCChh
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPK 206 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~lSAT~~~~ 206 (457)
..++|+||++|.+.... .....+-.+.+.+ .+.++|+.|..+|..
T Consensus 97 ~~DlL~iDDi~~l~~~~----~~q~~lf~l~n~~~~~~k~li~ts~~~P~~ 143 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQ----RTQEELFHLFNRLIESGKQLILTSDRPPSE 143 (219)
T ss_dssp TSSEEEEETGGGGTTHH----HHHHHHHHHHHHHHHTTSEEEEEESS-TTT
T ss_pred cCCEEEEecchhhcCch----HHHHHHHHHHHHHHhhCCeEEEEeCCCCcc
Confidence 48999999999985421 1112333333322 255666666666554
No 282
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.61 E-value=0.056 Score=56.33 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=31.9
Q ss_pred CCCCccccccccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC---CCEEEEcCCCchhhHHHHH
Q 012728 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~---~~~lv~a~TGsGKT~~~~l 72 (457)
|..++.++....+...|+++--++.+.+.|+.. +..+ +..|+.||.|+|||.++.+
T Consensus 1 m~m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~a----------------I~~~rl~HAYLF~GP~GtGKTt~Ari 59 (725)
T PRK07133 1 MRMKYKALYRKYRPKTFDDIVGQDHIVQTLKNI----------------IKSNKISHAYLFSGPRGTGKTSVAKI 59 (725)
T ss_pred CCcchhhHHHHhCCCCHHHhcCcHHHHHHHHHH----------------HHcCCCCeEEEEECCCCCcHHHHHHH
Confidence 444444444444555555554444444444432 2222 3468999999999977644
No 283
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.59 E-value=0.16 Score=52.59 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchhhHHHHHh
Q 012728 54 RDCFCLMPTGGGKSMCYQIP 73 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~ 73 (457)
+.+|+.||.|+|||.++.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 35799999999999776543
No 284
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.59 E-value=0.099 Score=47.04 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012728 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+..+++.||+|+|||..+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999543
No 285
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.59 E-value=0.1 Score=47.37 Aligned_cols=35 Identities=20% Similarity=0.013 Sum_probs=24.4
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhhhcC-CCeEEEEcc
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ---IPALAK-PGIVLVVSP 86 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~---l~~l~~-~~~~lvl~P 86 (457)
.|.-+++.|++|+|||...+ .-.... +..+++++.
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 56678899999999996433 122223 778888883
No 286
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.57 E-value=0.038 Score=48.51 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
-++++.+|+|+|||.+.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 379999999999997653
No 287
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.13 Score=48.70 Aligned_cols=33 Identities=12% Similarity=0.088 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHH----cC---CCEEEEcCCCchhhHHHH
Q 012728 39 FRDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 39 ~~~~Q~~~i~~~~----~~---~~~lv~a~TGsGKT~~~~ 71 (457)
++|||+..+..+. +| +..++.||.|.||+..+.
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~ 42 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIR 42 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHH
Confidence 4688888887765 33 357799999999996553
No 288
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.52 E-value=0.11 Score=55.50 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=26.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCCh
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~ 205 (457)
...+++||||+|.|...+ .+.|.++++..+..-+++|..|-..
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChh
Confidence 457899999999996533 3556666666554434444445333
No 289
>PRK04195 replication factor C large subunit; Provisional
Probab=95.49 E-value=0.14 Score=51.73 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
.+.+++.||+|+|||..+..
T Consensus 39 ~~~lLL~GppG~GKTtla~a 58 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHA 58 (482)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35799999999999976543
No 290
>PRK05580 primosome assembly protein PriA; Validated
Probab=95.46 E-value=0.093 Score=55.28 Aligned_cols=76 Identities=21% Similarity=0.181 Sum_probs=64.8
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEec
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~ 334 (457)
+.++||.+++++.+.++.+.|++. |..+..+||+++..+|.+...+..+|+.+|+|+|...- -+.+.++.+||.-+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHh-cccccCCCEEEEEC
Confidence 568999999999999999999874 78899999999999999999999999999999997432 25567888887554
No 291
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.45 E-value=0.092 Score=50.95 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=14.6
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999976643
No 292
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.44 E-value=0.06 Score=61.59 Aligned_cols=56 Identities=18% Similarity=0.176 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHH--HHhhhc-----CCCeEEEEcchHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPALA-----KPGIVLVVSPLIALMEN 93 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~--~l~~l~-----~~~~~lvl~P~~~L~~q 93 (457)
.+++.|.+++..++.+ +-+++.+..|+|||... ++.++. .+..++.++||-.-+..
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 5899999999999975 45788999999999653 223322 24578889999776654
No 293
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.43 E-value=0.12 Score=50.81 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=24.8
Q ss_pred CEEEEcCCCchhhHHHH-HhhhcCCCeEEEEcchH
Q 012728 55 DCFCLMPTGGGKSMCYQ-IPALAKPGIVLVVSPLI 88 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~~l~~~~~~lvl~P~~ 88 (457)
.+++.+|.|+|||..+. ++.....+-+=+++|-.
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~ 574 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPED 574 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHH
Confidence 68999999999995444 44445567777777753
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.43 E-value=0.11 Score=51.27 Aligned_cols=16 Identities=25% Similarity=0.195 Sum_probs=13.6
Q ss_pred CEEEEcCCCchhhHHH
Q 012728 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
.+++.||+|+|||...
T Consensus 138 ~l~l~G~~G~GKThL~ 153 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLL 153 (405)
T ss_pred eEEEECCCCCcHHHHH
Confidence 5789999999999654
No 295
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.41 E-value=0.093 Score=53.15 Aligned_cols=77 Identities=17% Similarity=0.157 Sum_probs=64.7
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccccCCCCCccEEEEec
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~v~~Vi~~~ 334 (457)
.++++||.+++..-+.++++.|++. |..+..+||+++..+|.....+..+|+.+|+|+|...-. ..++++.+||.-+
T Consensus 24 ~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 24 LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 3567999999999999999999865 778999999999999999999999999999999975332 4567788888544
No 296
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.41 E-value=0.11 Score=52.68 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=30.1
Q ss_pred ccccCCCCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH
Q 012728 13 QTQKNKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g-~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
....|+++.-.++....+.+... +..+..++... ....+.+++.+|+|+|||..+-
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHHHH
Confidence 45566666666665555554211 11111111110 1112579999999999997653
No 297
>PRK06904 replicative DNA helicase; Validated
Probab=95.38 E-value=0.42 Score=47.98 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=65.8
Q ss_pred cCCCEEEEcCCCchhhHHHH-H---hhhcCCCeEEEEcchHHHHHHHHHHHHHc--CCceeEec-C-CCcHHHHHHHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS-S-TQTMQVKTKIYED 123 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l---~~l~~~~~~lvl~P~~~L~~q~~~~~~~~--~~~~~~~~-~-~~~~~~~~~~~~~ 123 (457)
.|.=+++.|.||.|||..++ + .+...+..+++++.- .-..|...++-.. ++....+. + .............
T Consensus 220 ~G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a 298 (472)
T PRK06904 220 PSDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISST 298 (472)
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHH
Confidence 34456778899999996543 1 122336677777643 2234555554432 22222222 2 2333333332222
Q ss_pred hhcCCCcccEEEE-CCCcccCchhHHHHHhhhh-cCCccEEEEeccccccccCC-CCH-HHHHHH----HHHHHhCCCcc
Q 012728 124 LDSGKPSLRLLYV-TPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISSWGH-DFR-PSYRKL----SSLRNYLPDVP 195 (457)
Q Consensus 124 ~~~~~~~~~i~~~-t~~~i~t~~~~~~l~~~~~-~~~l~~lViDEah~~~~~~~-~~~-~~~~~l----~~~~~~~~~~~ 195 (457)
.........+.+. ++. +..........+... .+.+++||||=.+.+...+. +-+ ..+..+ +.+...+ +++
T Consensus 299 ~~~l~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ip 376 (472)
T PRK06904 299 VGMFKQKPNLYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKEL-KVP 376 (472)
T ss_pred HHHHhcCCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHHh-CCe
Confidence 1111111223332 222 111222222323222 23589999999998854331 111 122222 2222222 677
Q ss_pred EEEEec
Q 012728 196 ILALTA 201 (457)
Q Consensus 196 ~v~lSA 201 (457)
++++|.
T Consensus 377 Vi~lsQ 382 (472)
T PRK06904 377 VVALSQ 382 (472)
T ss_pred EEEEEe
Confidence 888773
No 298
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=95.36 E-value=0.019 Score=58.62 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=90.7
Q ss_pred CCCCHHHHHHHHHHHc--------CC--CEEEEcCCCchhhHHHHHhh----hcCCCeEEEEcchHHHHHHHHHHHHHcC
Q 012728 37 AQFRDKQLDAIQAVLS--------GR--DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKG 102 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~--------~~--~~lv~a~TGsGKT~~~~l~~----l~~~~~~lvl~P~~~L~~q~~~~~~~~~ 102 (457)
..++..|.+++-.+.. |+ .+++-...|.||-.+..-.+ |.-.+++|+++-+..|--+--+.+++.|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~Dig 342 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIG 342 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcC
Confidence 3577889998876652 32 34555466666653322112 2336789999999999877777888765
Q ss_pred CceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCc-cc----C-ch---hHHHHHhhhhcCCccEEEEecccccccc
Q 012728 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TA----T-PG---FMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~-i~----t-~~---~~~~l~~~~~~~~l~~lViDEah~~~~~ 173 (457)
.....++...... .. -.....++...--++++|.-- |+ + -. ++..+...+-...=.+||+||||...+.
T Consensus 343 A~~I~V~alnK~K-Ya-kIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL 420 (1300)
T KOG1513|consen 343 ATGIAVHALNKFK-YA-KISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNL 420 (1300)
T ss_pred CCCccceehhhcc-cc-cccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhccc
Confidence 4433222111100 00 001111222234566666542 22 1 11 2333333332333468999999997540
Q ss_pred ---C-CCCHHHHHHHHHHHHhCCCccEEEEeccCC
Q 012728 174 ---G-HDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (457)
Q Consensus 174 ---~-~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~ 204 (457)
+ ..--+.=..+..+.+.+|++++|.-|||-.
T Consensus 421 ~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 421 VPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGA 455 (1300)
T ss_pred ccccCCCcCcccHhHHHHHHhCCCceEEEeeccCC
Confidence 0 000011145777888999999999999943
No 299
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=95.36 E-value=0.016 Score=56.75 Aligned_cols=57 Identities=26% Similarity=0.330 Sum_probs=45.9
Q ss_pred CEEEEcCCCchhhHHHHHhhhc-CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCC
Q 012728 55 DCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~l~-~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 111 (457)
++++.||||+|||.++++|.+. ..+.++|+=|.-++........+..|..+..+...
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~nP~ 58 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFDPT 58 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEcCC
Confidence 4789999999999998888655 47789999999999988777777777766665543
No 300
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.33 E-value=0.028 Score=59.13 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=47.6
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-hhc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l--~-~l~----~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
.+++-|.+++.. .+..++|.|++|||||.+..- . ++. ...++++++.|+..|.++.+++...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 378999999865 346799999999999966432 1 122 1457999999999999998888763
No 301
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.32 E-value=0.26 Score=48.50 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.9
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.++++.||+|+|||...
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999764
No 302
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.28 E-value=0.15 Score=53.13 Aligned_cols=90 Identities=26% Similarity=0.225 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhC-C-CceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccc
Q 012728 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (457)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~-g-~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~ 319 (457)
.|.+.+.++++. ..++.+||.++....+.++.+.|++. | ..+..+|+++++.+|.+...+..+|+.+|+|.|..+
T Consensus 172 GKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSA- 250 (665)
T PRK14873 172 DWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSA- 250 (665)
T ss_pred cHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEccee-
Confidence 455555555543 24667999999999999999999876 4 679999999999999999999999999999999763
Q ss_pred ccCCCCCccEEEEec
Q 012728 320 MGIDRKDVRLVCHFN 334 (457)
Q Consensus 320 ~Gldip~v~~Vi~~~ 334 (457)
.=.-+++...||..+
T Consensus 251 vFaP~~~LgLIIvdE 265 (665)
T PRK14873 251 VFAPVEDLGLVAIWD 265 (665)
T ss_pred EEeccCCCCEEEEEc
Confidence 234455666777544
No 303
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.25 E-value=0.26 Score=50.64 Aligned_cols=44 Identities=18% Similarity=0.337 Sum_probs=26.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCCh
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~ 205 (457)
....+++||||+|.+... ..+.+...+...|..-++++..|-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 345789999999998652 23555555555554333333335443
No 304
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.20 E-value=0.056 Score=54.57 Aligned_cols=102 Identities=17% Similarity=0.098 Sum_probs=63.2
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHHHHHHHhhcCC
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (457)
.|.-+++.+|+|+|||...+ ...+.++.++++++- -+-..|..+++.++|..... ....+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~lg~~~~~---------------~~~~g~ 325 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSWGIDFEE---------------MEQQGL 325 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHcCCChHH---------------HhhCCc
Confidence 34578999999999996443 333456778888874 56667888888888753211 011111
Q ss_pred CcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccccc
Q 012728 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 129 ~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (457)
..++-..|....-..++..+.+.....+.++||||=...+.
T Consensus 326 --l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~ 366 (484)
T TIGR02655 326 --LKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSALA 366 (484)
T ss_pred --EEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 33333334433334455666665555567899999988663
No 305
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.15 Score=50.23 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=34.6
Q ss_pred HHHHHhhhhcCCccEEEEeccccccccCCCCHHHH--HHHHHHHHhC----CCccEEEEeccCChhHHH
Q 012728 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYL----PDVPILALTATAAPKVQK 209 (457)
Q Consensus 147 ~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~--~~l~~~~~~~----~~~~~v~lSAT~~~~~~~ 209 (457)
..++......+.-..|.|||.|.+..--..-...| +.+..++..+ ++..+|.+.||=-++...
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 33444333334466889999999964111111112 2233333332 477899999996665544
No 306
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.15 E-value=0.15 Score=52.32 Aligned_cols=19 Identities=26% Similarity=0.387 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
+..|+.||.|+|||.++-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~ 57 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKI 57 (559)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999977644
No 307
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.2 Score=47.79 Aligned_cols=33 Identities=18% Similarity=0.030 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEcCCCchhhHHHH
Q 012728 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~--~---~~~lv~a~TGsGKT~~~~ 71 (457)
++|||...+..+.. + +..++.+|.|.||+..+.
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~ 39 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQ 39 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHH
Confidence 46888888887763 3 368899999999996554
No 308
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.12 E-value=0.042 Score=49.43 Aligned_cols=51 Identities=25% Similarity=0.197 Sum_probs=34.1
Q ss_pred cCCCEEEEcCCCchhhHHH---HHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 52 SGRDCFCLMPTGGGKSMCY---QIPALAK-PGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~---~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
.|..+++.+|+|+|||... +...+.+ +.++++++- .+-..+..+.++++|.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~-ee~~~~l~~~~~s~g~ 72 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSF-EEPPEELIENMKSFGW 72 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEES-SS-HHHHHHHHHTTTS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEe-cCCHHHHHHHHHHcCC
Confidence 4567899999999999543 3345566 788888884 3444667777777765
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.10 E-value=0.84 Score=41.23 Aligned_cols=52 Identities=19% Similarity=0.072 Sum_probs=34.6
Q ss_pred cCCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 52 SGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.|.-+++.+++|+|||....- ..+.++.+++++.--.. ..+..+.+..+|..
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~g~~ 78 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESVKID 78 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHCCCC
Confidence 345688899999999954332 23445777877776433 35677777777643
No 310
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.04 E-value=0.22 Score=52.78 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
..++++.+|+|+|||..+.
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999997653
No 311
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.14 Score=48.55 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=38.9
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCC-------------H-HHHHHH-----HHHHcC-----CCEEEEcCCCchh
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFR-------------D-KQLDAI-----QAVLSG-----RDCFCLMPTGGGK 66 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~-------------~-~Q~~~i-----~~~~~~-----~~~lv~a~TGsGK 66 (457)
.+..+.|+..+...++.+.|+...=-..|. . .++.++ |.+.+| +.++..+|+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 456778888999989998888642111111 1 122211 223344 6899999999999
Q ss_pred hHHH
Q 012728 67 SMCY 70 (457)
Q Consensus 67 T~~~ 70 (457)
|+.+
T Consensus 259 TlLA 262 (491)
T KOG0738|consen 259 TLLA 262 (491)
T ss_pred HHHH
Confidence 9876
No 312
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.00 E-value=0.22 Score=48.74 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
.+.+++.+|+|+|||+.+-.
T Consensus 179 pkgvLL~GppGTGKT~LAka 198 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKA 198 (398)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 46899999999999986543
No 313
>CHL00176 ftsH cell division protein; Validated
Probab=95.00 E-value=0.39 Score=49.96 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.+|+|+|||..+-
T Consensus 217 ~gVLL~GPpGTGKT~LAr 234 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAK 234 (638)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 479999999999997653
No 314
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.97 E-value=0.22 Score=46.99 Aligned_cols=34 Identities=12% Similarity=-0.073 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHH----cC---CCEEEEcCCCchhhHHHH
Q 012728 38 QFRDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~----~~---~~~lv~a~TGsGKT~~~~ 71 (457)
.++|||...+..+. .+ +..++.+|.|.||+..+.
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~ 43 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVE 43 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 36788888887765 33 368899999999996543
No 315
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.97 E-value=0.2 Score=53.39 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.++++.+|+|+|||...
T Consensus 204 ~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CceEEECCCCCCHHHHH
Confidence 58999999999999765
No 316
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.96 E-value=0.14 Score=51.99 Aligned_cols=39 Identities=26% Similarity=0.368 Sum_probs=23.7
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC-ccEEEEe
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~lS 200 (457)
.+..+++||||+|.+.... .+.+.......|+ ..+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a------~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS------FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH------HHHHHHHHhcCCCCceEEEEE
Confidence 4457899999999986422 2455555555553 3344433
No 317
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.96 E-value=0.34 Score=48.27 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=14.2
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.||+|+|||...
T Consensus 131 n~l~lyG~~G~GKTHLl 147 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_pred CeEEEEcCCCCcHHHHH
Confidence 36899999999999644
No 318
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.96 E-value=0.13 Score=43.72 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=34.3
Q ss_pred HhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012728 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
.+......+++||+||+-...++|. -+. ..+..++...|...-+.+|+.-.++
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gl--i~~-~~v~~lL~~rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGY--LDV-EEVVEALQERPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCC--cCH-HHHHHHHHhCCCCCEEEEECCCCCH
Confidence 3444456699999999988877773 222 4455666667755556666655444
No 319
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.95 E-value=0.13 Score=46.14 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012728 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
+..+++.||+|+|||..+
T Consensus 38 ~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 38 DRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999655
No 320
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.93 E-value=0.037 Score=58.90 Aligned_cols=63 Identities=19% Similarity=0.217 Sum_probs=48.5
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-hhc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l--~-~l~----~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
..|+|-|.+++.. ....++|.|..|||||.+..- . ++. ....+++++.|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999864 346899999999999965432 1 122 2457999999999999998888774
No 321
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.89 E-value=0.21 Score=51.80 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
..+|+.||.|+|||..+..
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~ 57 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARI 57 (620)
T ss_pred ceEEEECCCCCChHHHHHH
Confidence 4679999999999976643
No 322
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.89 E-value=0.065 Score=56.08 Aligned_cols=76 Identities=21% Similarity=0.191 Sum_probs=64.8
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecccc-ccCCCCCccEEE
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-MGIDRKDVRLVC 331 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~-~Gldip~v~~Vi 331 (457)
.+.+++|.++|+.-+.+.++.+++. |+++..+||+++..+|...++...+|+.+|+|+|..+- ..+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 4568999999999999888877653 78999999999999999999999999999999998643 457777888877
Q ss_pred E
Q 012728 332 H 332 (457)
Q Consensus 332 ~ 332 (457)
.
T Consensus 363 I 363 (630)
T TIGR00643 363 I 363 (630)
T ss_pred E
Confidence 4
No 323
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.87 E-value=0.16 Score=47.87 Aligned_cols=18 Identities=22% Similarity=0.165 Sum_probs=14.9
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012728 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
++.+++.||+|+|||..+
T Consensus 156 ~~gl~L~G~~G~GKThLa 173 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLL 173 (306)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999543
No 324
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=1.4 Score=39.77 Aligned_cols=78 Identities=10% Similarity=0.153 Sum_probs=47.5
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHH
Q 012728 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~ 91 (457)
.....++.+-+++-...+.+.-...-+.|- .-+..-. --+.+++.+|+|+|||+++- +...+..-+.+-+--.+|+
T Consensus 172 pdvty~dvggckeqieklrevve~pll~pe--rfv~lgidppkgvllygppgtgktl~ar-avanrtdacfirvigselv 248 (435)
T KOG0729|consen 172 PDVTYSDVGGCKEQIEKLREVVELPLLHPE--RFVNLGIDPPKGVLLYGPPGTGKTLCAR-AVANRTDACFIRVIGSELV 248 (435)
T ss_pred CCcccccccchHHHHHHHHHHHhccccCHH--HHhhcCCCCCCceEEeCCCCCchhHHHH-HHhcccCceEEeehhHHHH
Confidence 345677888888888888775333333332 2221111 23789999999999999863 3334444455555555776
Q ss_pred HH
Q 012728 92 EN 93 (457)
Q Consensus 92 ~q 93 (457)
+.
T Consensus 249 qk 250 (435)
T KOG0729|consen 249 QK 250 (435)
T ss_pred HH
Confidence 53
No 325
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.86 E-value=0.15 Score=54.55 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.4
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
.++.+++.+|+|+|||..+-
T Consensus 211 ~~~giLL~GppGtGKT~lar 230 (733)
T TIGR01243 211 PPKGVLLYGPPGTGKTLLAK 230 (733)
T ss_pred CCceEEEECCCCCChHHHHH
Confidence 35789999999999997643
No 326
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.85 E-value=0.19 Score=45.61 Aligned_cols=52 Identities=15% Similarity=-0.014 Sum_probs=36.9
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.|..+++.+|+|+|||..++ ...+.++.++++++- .+-..+..+++..+|..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCC
Confidence 45678999999999996443 333456778888884 45556777777776653
No 327
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.84 E-value=0.32 Score=48.97 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=14.6
Q ss_pred EEEEcCCCchhhHHHHHh
Q 012728 56 CFCLMPTGGGKSMCYQIP 73 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~ 73 (457)
.++.||.|+|||.++.+-
T Consensus 41 yLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 41 YIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999776543
No 328
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.83 E-value=0.32 Score=50.15 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=16.2
Q ss_pred CCEEEEcCCCchhhHHHHHh
Q 012728 54 RDCFCLMPTGGGKSMCYQIP 73 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~ 73 (457)
+.+|+.+|.|+|||..+.+.
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~l 66 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARIL 66 (598)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 36899999999999776543
No 329
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.83 E-value=0.28 Score=47.52 Aligned_cols=50 Identities=28% Similarity=0.128 Sum_probs=31.2
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
|.-+++.+++|+|||...+-.+ ...+.+++++.-.. -..|...+..+++.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rlg~ 134 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRLGI 134 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHcCC
Confidence 4567889999999996544222 22356888887543 33455555555543
No 330
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.81 E-value=0.42 Score=47.73 Aligned_cols=44 Identities=18% Similarity=0.050 Sum_probs=25.4
Q ss_pred CCEEEEcCCCchhhHHHH-Hhh-h---cCCCeEEEEcchHHHHHHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ-IPA-L---AKPGIVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~-l~~-l---~~~~~~lvl~P~~~L~~q~~~~~ 98 (457)
+.+++.|++|+|||.... +.- + ..+.+++++.+ .++..+....+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 358899999999994322 111 1 12455665554 55655544443
No 331
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.80 E-value=0.71 Score=47.58 Aligned_cols=55 Identities=11% Similarity=-0.008 Sum_probs=39.3
Q ss_pred HHHHHHcCCCEEEEcCCCchhhHHHHHh---hhc-CCCeEEEEcchHHHHHHHHHHHHH
Q 012728 46 AIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA-KPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 46 ~i~~~~~~~~~lv~a~TGsGKT~~~~l~---~l~-~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.+-...+.+-.++.+|=|-|||.+..+. ++. .+.+++|.+|...-+.+..++++.
T Consensus 180 ~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 180 RIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred HHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 3333445677888899999999654322 122 477899999999888888877665
No 332
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.80 E-value=0.037 Score=55.87 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=30.5
Q ss_pred cCCC-CCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHH
Q 012728 34 FGHA-QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 34 ~g~~-~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~ 71 (457)
|+|. +|+++|.+.+..+. +|+-.|+-.|||+|||+..+
T Consensus 10 F~fPy~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLi 52 (821)
T KOG1133|consen 10 FPFPYTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLI 52 (821)
T ss_pred cCCCCCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHH
Confidence 4443 58899999887765 68888999999999998654
No 333
>PRK08840 replicative DNA helicase; Provisional
Probab=94.80 E-value=0.51 Score=47.22 Aligned_cols=121 Identities=11% Similarity=0.106 Sum_probs=55.1
Q ss_pred HHcCCCEEEEcCCCchhhHHHH-H---hhhcCCCeEEEEcchHHHHHHHHHHHHHc--CCceeEe-cCCCcHHHHHHHHH
Q 012728 50 VLSGRDCFCLMPTGGGKSMCYQ-I---PALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFL-SSTQTMQVKTKIYE 122 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~~-l---~~l~~~~~~lvl~P~~~L~~q~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~ 122 (457)
+..|+=+++.|.||.|||..++ + .+...+..+++++.-.. ..|...++-.. ++....+ .+............
T Consensus 214 ~~~g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~ 292 (464)
T PRK08840 214 LQGSDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISS 292 (464)
T ss_pred CCCCceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHH
Confidence 3344557778899999996543 1 12334667777764322 34455444331 2222111 22233333333222
Q ss_pred HhhcCCCcccEEEE-CCCcccCchhHHHHHhhhhc-CCccEEEEeccccccc
Q 012728 123 DLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISS 172 (457)
Q Consensus 123 ~~~~~~~~~~i~~~-t~~~i~t~~~~~~l~~~~~~-~~l~~lViDEah~~~~ 172 (457)
....-.....+.+- ++. +..........+.... ..+++||||=.|.+..
T Consensus 293 a~~~l~~~~~l~I~d~~~-~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~ 343 (464)
T PRK08840 293 TMGILMEKKNMYIDDSSG-LTPTEVRSRARRIAREHGGLSMIMVDYLQLMRV 343 (464)
T ss_pred HHHHHHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCC
Confidence 11110001223332 222 1111222223233222 3489999999998853
No 334
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.79 E-value=0.044 Score=58.30 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=48.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hhh-hc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~~-l~----~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
..++|-|.+++... ...++|.|..|||||.+.. +.- +. ....+++++-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999998643 4689999999999996543 221 22 2467999999999999999988774
No 335
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.75 E-value=0.081 Score=49.48 Aligned_cols=58 Identities=12% Similarity=0.149 Sum_probs=43.7
Q ss_pred cCCCCCCHHHHHHHHHHHcCC-CEEEEcCCCchhhHH-HHHhh-hcCCCeEEEEcchHHHH
Q 012728 34 FGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPA-LAKPGIVLVVSPLIALM 91 (457)
Q Consensus 34 ~g~~~~~~~Q~~~i~~~~~~~-~~lv~a~TGsGKT~~-~~l~~-l~~~~~~lvl~P~~~L~ 91 (457)
..|..+++-|...+..+...+ |+++++.||||||.. ..+.. .....++|.+=-|.+|-
T Consensus 153 i~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 153 IIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred HHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 356789999999998888765 999999999999943 22222 23355888888888874
No 336
>CHL00181 cbbX CbbX; Provisional
Probab=94.75 E-value=0.42 Score=44.59 Aligned_cols=19 Identities=21% Similarity=0.149 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCchhhHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~ 71 (457)
+.++++.+|+|+|||..+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3468999999999997764
No 337
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=94.74 E-value=0.22 Score=48.76 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.||+|+|||..+-
T Consensus 166 ~gvLL~GppGtGKT~lAk 183 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAK 183 (389)
T ss_pred CceEEECCCCCChHHHHH
Confidence 579999999999997654
No 338
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.35 Score=49.52 Aligned_cols=43 Identities=21% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCCh
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~ 205 (457)
...+++||||+|.+... ....+.......|...++.+.+|-+.
T Consensus 118 ~~~KVIIIDEad~Lt~~------A~NaLLKtLEEPp~~tvfIL~Tt~~~ 160 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTS------AWNALLKTLEEPPKHVVFIFATTEFQ 160 (605)
T ss_pred CCcEEEEEechHhCCHH------HHHHHHHHHHhCCCcEEEEEECCChH
Confidence 34678999999998532 23455555555554444545445433
No 339
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.69 E-value=0.26 Score=50.47 Aligned_cols=41 Identities=17% Similarity=0.061 Sum_probs=23.4
Q ss_pred CEEEEcCCCchhhHHHH-Hhh-hc---CCCeEEEEcchHHHHHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQ-IPA-LA---KPGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~~-l~---~~~~~lvl~P~~~L~~q~~~ 96 (457)
.+++.+++|+|||.... +.. +. .+.+++++ +..+++++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yi-taeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYV-SSEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEe-eHHHHHHHHHH
Confidence 48899999999995422 211 11 23445444 44566655443
No 340
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.69 E-value=0.28 Score=52.47 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=34.0
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEE
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl 84 (457)
..|++++..+.+.+.|++...+. ..++. .+..+ ...+.+++.+|+|+|||+.+-..+-..+...+.+
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~--~~~~~-~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWP--LKHPE-IFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhh--hhCHH-HHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 35666666666666665532111 01111 11111 1235689999999999987644333333333333
No 341
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.69 E-value=0.33 Score=41.06 Aligned_cols=47 Identities=19% Similarity=0.238 Sum_probs=28.5
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHH
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~ 209 (457)
+..+++||||||.|... ..+.+.+.++.-|..-+++|+++-......
T Consensus 101 ~~~KviiI~~ad~l~~~------a~NaLLK~LEepp~~~~fiL~t~~~~~il~ 147 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE------AQNALLKTLEEPPENTYFILITNNPSKILP 147 (162)
T ss_dssp SSSEEEEEETGGGS-HH------HHHHHHHHHHSTTTTEEEEEEES-GGGS-H
T ss_pred CCceEEEeehHhhhhHH------HHHHHHHHhcCCCCCEEEEEEECChHHChH
Confidence 34789999999998542 236666777776654455555554444433
No 342
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.66 E-value=0.2 Score=46.06 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCchhhHHHHHh---hhcC-CCeEEEEcch---HHHHHHHHHHHHHcCCceeEecCC-CcHHHHHHHH---
Q 012728 53 GRDCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVSPL---IALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIY--- 121 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~---~l~~-~~~~lvl~P~---~~L~~q~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--- 121 (457)
|.=+++.|+||.|||..++-. +... +..+++++.- .+++......... +....+... ..........
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~--v~~~~i~~g~l~~~e~~~~~~~~ 96 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSG--VPYNKIRSGDLSDEEFERLQAAA 96 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHT--STHHHHHCCGCHHHHHHHHHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhc--chhhhhhccccCHHHHHHHHHHH
Confidence 345777889999999655422 2233 5788888853 3444443333332 322222222 2222222221
Q ss_pred HHhhcCCCcccEEEECCCcccCchhHHHHHhhhhc-CCccEEEEeccccccccC--CCCHHHHH----HHHHHHHhCCCc
Q 012728 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWG--HDFRPSYR----KLSSLRNYLPDV 194 (457)
Q Consensus 122 ~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~-~~l~~lViDEah~~~~~~--~~~~~~~~----~l~~~~~~~~~~ 194 (457)
..+.. ..+++....-+........+...... ..+++||||=.|.+.... .+-+..+. .++.+...+ ++
T Consensus 97 ~~l~~----~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~-~i 171 (259)
T PF03796_consen 97 EKLSD----LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL-NI 171 (259)
T ss_dssp HHHHT----SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-TS
T ss_pred HHHhh----CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-CC
Confidence 12222 23443322222222233333333333 678999999999986531 11222222 233333322 77
Q ss_pred cEEEEeccC
Q 012728 195 PILALTATA 203 (457)
Q Consensus 195 ~~v~lSAT~ 203 (457)
+++++|..-
T Consensus 172 ~vi~~sQln 180 (259)
T PF03796_consen 172 PVIALSQLN 180 (259)
T ss_dssp EEEEEEEBS
T ss_pred eEEEccccC
Confidence 888887753
No 343
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.66 E-value=0.17 Score=42.39 Aligned_cols=54 Identities=24% Similarity=0.297 Sum_probs=33.4
Q ss_pred HhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEecc-CChhH
Q 012728 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT-AAPKV 207 (457)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT-~~~~~ 207 (457)
.........++||+||+=....+|. -+. ..+..+.+..|...-+.+|+- +|++.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gl--i~~-~~v~~ll~~rp~~~evIlTGr~~p~~l 142 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGL--LDV-EEVVDLLKAKPEDLELVLTGRNAPKEL 142 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCC--CCH-HHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 3444456689999999988877663 222 455666666675544555554 44443
No 344
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.64 E-value=0.29 Score=49.47 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
.+++.+|+|+|||.++.
T Consensus 38 a~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35999999999997654
No 345
>PRK05748 replicative DNA helicase; Provisional
Probab=94.64 E-value=0.22 Score=49.82 Aligned_cols=118 Identities=14% Similarity=0.026 Sum_probs=53.9
Q ss_pred cCCCEEEEcCCCchhhHHHHHh----hhcCCCeEEEEcchHHHHHHHHHHHHH-c-CCceeEe-cCCCcHHHHHHHHHHh
Q 012728 52 SGRDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE-K-GIAGEFL-SSTQTMQVKTKIYEDL 124 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~----~l~~~~~~lvl~P~~~L~~q~~~~~~~-~-~~~~~~~-~~~~~~~~~~~~~~~~ 124 (457)
.|.-+++.|+||.|||...+-- +...+..+++++.- .-..|...++.. . ++....+ ................
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 3455778889999999654421 12336667777632 223444555432 1 2221111 1122222222221111
Q ss_pred hcCCCcccEEEECCCcccCchhHHHHHhhhhcC-CccEEEEecccccc
Q 012728 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCIS 171 (457)
Q Consensus 125 ~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~-~l~~lViDEah~~~ 171 (457)
.... +..+.+.-..-+........+.+..... .+++||||=.+.+.
T Consensus 281 ~~l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 281 GSLS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 1111 1234433211121122333333333333 68999999999885
No 346
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.61 E-value=0.22 Score=46.06 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=21.1
Q ss_pred CHHHHHHHHHHH----cCC-CEEEEcCCCchhhHHHH
Q 012728 40 RDKQLDAIQAVL----SGR-DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 40 ~~~Q~~~i~~~~----~~~-~~lv~a~TGsGKT~~~~ 71 (457)
++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 344555554442 233 58899999999997654
No 347
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.61 E-value=0.03 Score=56.53 Aligned_cols=58 Identities=29% Similarity=0.441 Sum_probs=46.5
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCC
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 111 (457)
.++++.||||||||..+++|.+.. .+-+||.=|.-+|.......+++.|.++..+...
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vldp~ 103 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLDPF 103 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEeecc
Confidence 369999999999999998887654 5678888899999988888888877665555433
No 348
>PRK08760 replicative DNA helicase; Provisional
Probab=94.60 E-value=0.34 Score=48.74 Aligned_cols=117 Identities=15% Similarity=0.064 Sum_probs=55.8
Q ss_pred CCCEEEEcCCCchhhHHHHH-h---hhcCCCeEEEEcchHHHHHHHHHHHHHcC--CceeEec-CCCcHHHHHHHHHHhh
Q 012728 53 GRDCFCLMPTGGGKSMCYQI-P---ALAKPGIVLVVSPLIALMENQVIGLKEKG--IAGEFLS-STQTMQVKTKIYEDLD 125 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l-~---~l~~~~~~lvl~P~~~L~~q~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 125 (457)
|.=+++.|.||.|||...+- + +...+..+++++.-- -..|+..++.... +....+. +...............
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM-s~~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~ 307 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM-SASQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIK 307 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC-CHHHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHH
Confidence 34567788999999965542 2 123356677776532 2345555655432 2221121 1222222222211111
Q ss_pred cCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEecccccc
Q 012728 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 126 ~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~ 171 (457)
.-. ...+++....-+........+.+......+++||||=.+.+.
T Consensus 308 ~l~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 308 MLK-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHh-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcC
Confidence 111 133443322222222233333444344558999999999885
No 349
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=94.60 E-value=0.026 Score=62.97 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=77.6
Q ss_pred ccEEEEeCCcccHHHHHHHHHhCC-CceEeecCCCC-----------HHHHHHHHHHHhcCCceEEEEeccccccCCCCC
Q 012728 259 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (457)
Q Consensus 259 ~~~iIf~~s~~~~~~l~~~L~~~g-~~~~~~~~~~~-----------~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldip~ 326 (457)
-..++|++.+..+..+.+.+...+ ..+..+.|.+. +..+.+++..|....+++|++|+++.+|+|++.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 346999999999998888887652 23333444321 234678889999999999999999999999999
Q ss_pred ccEEEEecCCCCHHHHHHHhcccCCCC
Q 012728 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (457)
Q Consensus 327 v~~Vi~~~~p~s~~~~~Qr~GRagR~g 353 (457)
++.++.++.|.....|+|+.||+.+.+
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997753
No 350
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=94.59 E-value=0.12 Score=53.88 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHh--cCCccEEEEeCCcccHHHHHHHHHhC-CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEeccccc
Q 012728 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (457)
Q Consensus 244 ~~~~~l~~~l~~--~~~~~~iIf~~s~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 320 (457)
.|.+.+.++++. ..++.+||.++.+....++.+.|+.. |.++..+||++++.+|.+...+..+|+.+|+|.|..+ .
T Consensus 229 GKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSA-l 307 (730)
T COG1198 229 GKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSA-L 307 (730)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechh-h
Confidence 344455554443 24678999999999999999999876 8899999999999999999999999999999999642 2
Q ss_pred cCCCCCccEEE
Q 012728 321 GIDRKDVRLVC 331 (457)
Q Consensus 321 Gldip~v~~Vi 331 (457)
=.-+++...||
T Consensus 308 F~Pf~~LGLII 318 (730)
T COG1198 308 FLPFKNLGLII 318 (730)
T ss_pred cCchhhccEEE
Confidence 23344555555
No 351
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.58 E-value=0.27 Score=46.89 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHH----cC---CCEEEEcCCCchhhHHHH
Q 012728 39 FRDKQLDAIQAVL----SG---RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 39 ~~~~Q~~~i~~~~----~~---~~~lv~a~TGsGKT~~~~ 71 (457)
++|||...+..+. +| +..++.||.|.||+..+.
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~ 42 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHH
Confidence 6789988887765 33 367899999999996543
No 352
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.58 E-value=0.11 Score=54.65 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh---hc----CCCeEEEEcchHHHHHHHHHHHHH
Q 012728 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA----KPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~---l~----~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
..+++-|.+++-. ...+++|.|..|||||.+..--+ +. .+..+++++.++..+.++.+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999999853 33578999999999997654221 11 256899999999999998888875
No 353
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.58 E-value=0.37 Score=46.15 Aligned_cols=17 Identities=24% Similarity=0.432 Sum_probs=14.7
Q ss_pred CEEEEcCCCchhhHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
.+++.||+|+|||..+.
T Consensus 38 ~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVR 54 (337)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997653
No 354
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.57 E-value=0.16 Score=52.16 Aligned_cols=63 Identities=16% Similarity=0.092 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhhh----cCCCeEEEEcchHHHHHHHHH-HHHH
Q 012728 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVI-GLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~l----~~~~~~lvl~P~~~L~~q~~~-~~~~ 100 (457)
..+|||.+.+..+... +.+.+..++-+|||.+.+..+. .....++++.||..++.+..+ ++..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 4789999999998765 5788999999999986543332 237789999999999998764 3443
No 355
>PHA02244 ATPase-like protein
Probab=94.56 E-value=0.38 Score=46.07 Aligned_cols=24 Identities=21% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHcCCCEEEEcCCCchhhHHHH
Q 012728 48 QAVLSGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 48 ~~~~~~~~~lv~a~TGsGKT~~~~ 71 (457)
.++..+.++++.+|||+|||..+.
T Consensus 114 r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 114 KIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHhcCCCEEEECCCCCCHHHHHH
Confidence 344467899999999999996553
No 356
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.56 Score=47.68 Aligned_cols=39 Identities=21% Similarity=0.304 Sum_probs=25.5
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q 93 (457)
+.+++.+|+|+|||+.+--.+...+...+-+... ++...
T Consensus 277 ~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk 315 (494)
T COG0464 277 KGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSK 315 (494)
T ss_pred CeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhcc
Confidence 4699999999999988765555444444433333 55443
No 357
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.39 Score=48.37 Aligned_cols=56 Identities=11% Similarity=-0.070 Sum_probs=35.8
Q ss_pred cccccCCCCChHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFG-HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g-~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
.++..|++++=-+.....|.+... +..|..++.-.+ .--+.+++.+|+|+|||..+
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv---~PprGvLlHGPPGCGKT~lA 240 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGV---RPPRGVLLHGPPGCGKTSLA 240 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCC---CCCCceeeeCCCCccHHHHH
Confidence 345678888766666666655422 334445544332 12368999999999999765
No 358
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.17 Score=46.05 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=66.6
Q ss_pred cCCCCChHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHH
Q 012728 16 KNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 16 ~~~~~~l~~~~~~~l~~~--~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q 93 (457)
.+.+.+-.+.-...+++. +..++|--|+.-.+. .-+.+++.+++|+|||+.+ ++.|+|
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGik---pPKGVIlyG~PGTGKTLLA-----------------KAVANq 242 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIK---PPKGVILYGEPGTGKTLLA-----------------KAVANQ 242 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCC---CCCeeEEeCCCCCchhHHH-----------------HHHhcc
Confidence 344555444444444443 234444444444331 2368999999999999876 556666
Q ss_pred HHHHHHHc-CCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 94 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
....|.+. |. .-+...+.+ .|.....+.+......-+.+.|||+|.+..
T Consensus 243 TSATFlRvvGs--------------eLiQkylGd----------------GpklvRqlF~vA~e~apSIvFiDEIdAiGt 292 (440)
T KOG0726|consen 243 TSATFLRVVGS--------------ELIQKYLGD----------------GPKLVRELFRVAEEHAPSIVFIDEIDAIGT 292 (440)
T ss_pred cchhhhhhhhH--------------HHHHHHhcc----------------chHHHHHHHHHHHhcCCceEEeehhhhhcc
Confidence 55444431 10 001111111 223344444444455577999999999853
Q ss_pred c----C-CCCHHHHHHHHHHHHhCC
Q 012728 173 W----G-HDFRPSYRKLSSLRNYLP 192 (457)
Q Consensus 173 ~----~-~~~~~~~~~l~~~~~~~~ 192 (457)
. + ..-|.....+.++++++.
T Consensus 293 KRyds~SggerEiQrtmLELLNQld 317 (440)
T KOG0726|consen 293 KRYDSNSGGEREIQRTMLELLNQLD 317 (440)
T ss_pred ccccCCCccHHHHHHHHHHHHHhcc
Confidence 1 1 112444445666776653
No 359
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=94.44 E-value=0.04 Score=56.60 Aligned_cols=58 Identities=21% Similarity=0.208 Sum_probs=48.6
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCC
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST 111 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~ 111 (457)
.++++.||||||||..+++|.+.. ++-+||+=|.-++........++.|..+..+...
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP~ 217 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEPA 217 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 479999999999999999997655 6788999999999998888888888777666543
No 360
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.44 E-value=1.4 Score=42.47 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=28.0
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHH
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVME 213 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~ 213 (457)
...++|+||=+-+... -......+..+.... |..-.+.+||+........+..
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~ 337 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILP 337 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHH
Confidence 3478999998876421 122334444444432 2333456677666554444433
No 361
>PRK05636 replicative DNA helicase; Provisional
Probab=94.41 E-value=0.44 Score=48.17 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCEEEEcCCCchhhHHHH-Hh---hhcCCCeEEEEc---chHHHHHHHHHHHHHcCCceeEe-cCCCcHHHHHHHHHHhh
Q 012728 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~-l~---~l~~~~~~lvl~---P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 125 (457)
.=+++.|.||.|||..++ +. +...+..+++++ |..+|+..+..... ++....+ .+...............
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~s--~v~~~~i~~g~l~~~e~~~~~~a~~ 343 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAEA--EVRLSDMRGGKMDEDAWEKLVQRLG 343 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 346778899999996444 21 223456677774 33344433322211 1221111 12223333333222221
Q ss_pred cCCCcccEEEE-CCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 126 ~~~~~~~i~~~-t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
... +..+++. ++. +.-........+......+++||||=.|.+..
T Consensus 344 ~l~-~~~l~I~d~~~-~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 344 KIA-QAPIFIDDSAN-LTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred HHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 111 1233332 221 11112222233333344589999999999853
No 362
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=94.40 E-value=0.34 Score=42.18 Aligned_cols=112 Identities=17% Similarity=0.096 Sum_probs=48.3
Q ss_pred cCCCEEEEcCCCchhhHHHH-H--hhhc----------CCCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCCcHHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ-I--PALA----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l--~~l~----------~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (457)
.|.-+++.||+|+|||...+ + .+.. ...+++++..-.. ..+..+++....... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 45568899999999996433 1 1122 3567888876544 446666666532111 111111
Q ss_pred HHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhc-CCccEEEEecccccccc
Q 012728 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSW 173 (457)
Q Consensus 119 ~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~-~~l~~lViDEah~~~~~ 173 (457)
.... .... ...+++.....--..+..+..+.+.... ...++||||=+..+...
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 1111 1110 0111111110011123344555555444 56899999999888653
No 363
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.39 E-value=0.18 Score=46.34 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=31.8
Q ss_pred cCCCEEEEcCCCchhhHHHH-H--hhhcCCCeEEEEcc---hHHHHHHHHHHHHHcCC
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSP---LIALMENQVIGLKEKGI 103 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l--~~l~~~~~~lvl~P---~~~L~~q~~~~~~~~~~ 103 (457)
.|.-+++.+++|+|||...+ + .....+.++++++- ...+..+.......+|.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 45678899999999995433 2 22345778888873 23333344444455543
No 364
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.37 E-value=0.62 Score=40.42 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.+|+|+|||..+
T Consensus 15 ~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLA 31 (188)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 365
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.28 Score=50.02 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.8
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
..++.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~ 57 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARI 57 (527)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368999999999976644
No 366
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.35 E-value=0.041 Score=59.24 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=0.0
Q ss_pred CCCEEEEcCCCchhhHHHHHhhhcC---------------------CCeEEEEcchHHHHHHHHHHHHH---cCCceeEe
Q 012728 53 GRDCFCLMPTGGGKSMCYQIPALAK---------------------PGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~l~~---------------------~~~~lvl~P~~~L~~q~~~~~~~---~~~~~~~~ 108 (457)
|+++++.-..|.|||..-+...+.. .+.+|||+|. ++..||.+++.. .+++.-..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Q ss_pred cCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCC----------------ccEEEEeccccccc
Q 012728 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL----------------LNLVAIDEAHCISS 172 (457)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~----------------l~~lViDEah~~~~ 172 (457)
.+-........ ..-.+++|+++|..++.+.-...........-+ |-.|++|||+.+-.
T Consensus 453 ~Girk~~~~~~------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves 526 (1394)
T KOG0298|consen 453 FGIRKTFWLSP------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES 526 (1394)
T ss_pred echhhhcccCc------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc
Q ss_pred cCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHHHHHHHc
Q 012728 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 173 ~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
-. ....++...++....=++|+||-.. ..++.-.+
T Consensus 527 ss-------S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 527 SS-------SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred hH-------HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
No 367
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.28 E-value=0.54 Score=46.86 Aligned_cols=50 Identities=26% Similarity=0.184 Sum_probs=32.5
Q ss_pred CCCEEEEcCCCchhhHHHH-Hhh--hcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 53 GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~~--l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
|.-+++.+++|+|||...+ +.. ...+.++++++-. +-..|...++.+++.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~E-es~~qi~~ra~rlg~ 132 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGE-ESASQIKLRAERLGL 132 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-ccHHHHHHHHHHcCC
Confidence 4567889999999996433 221 2346788888753 444566666666654
No 368
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.27 E-value=0.13 Score=48.71 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCchhhHH--HHHhhh---cCCCeEEEEcchHHH
Q 012728 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMC--YQIPAL---AKPGIVLVVSPLIAL 90 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~--~~l~~l---~~~~~~lvl~P~~~L 90 (457)
.+++.|.+.+..+. .+.+++++++||||||.. +++..+ ....+++.+=.+.+|
T Consensus 128 ~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 128 IMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 36788888876665 457899999999999943 222222 124566666666665
No 369
>PRK05595 replicative DNA helicase; Provisional
Probab=94.25 E-value=0.27 Score=49.09 Aligned_cols=147 Identities=15% Similarity=0.112 Sum_probs=66.9
Q ss_pred CCCEEEEcCCCchhhHHHH-Hh---hhcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEecC-CCcHHHHHHHHHHhh
Q 012728 53 GRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQTMQVKTKIYEDLD 125 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~ 125 (457)
|.=+++.|.||.|||..++ ++ +...+.++++++.-- -..|...++.. .++....+.. ...............
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm-s~~~l~~R~~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~ 279 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM-SKEQLAYKLLCSEANVDMLRLRTGNLEDKDWENIARASG 279 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 3446678899999996544 22 223467787776532 22344444333 2333222221 122222222222211
Q ss_pred cCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCC-CCH-HHHHH----HHHHHHhCCCccEEEE
Q 012728 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFR-PSYRK----LSSLRNYLPDVPILAL 199 (457)
Q Consensus 126 ~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~-~~~-~~~~~----l~~~~~~~~~~~~v~l 199 (457)
.-. ...+.+--+.-+.-......+.+......+++||||=.|.+...+. .-+ ..+.. ++.+...+ +++++++
T Consensus 280 ~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~~~r~~~v~~is~~LK~lAke~-~i~vi~l 357 (444)
T PRK05595 280 PLA-AAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGSESRQQEVSEISRSIKALAKEM-ECPVIAL 357 (444)
T ss_pred HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCCccHHHHHHHHHHHHHHHHHHh-CCeEEEe
Confidence 110 1233332211121122333333333334589999999999863221 112 11222 22222221 6778887
Q ss_pred ecc
Q 012728 200 TAT 202 (457)
Q Consensus 200 SAT 202 (457)
|..
T Consensus 358 sQL 360 (444)
T PRK05595 358 SQL 360 (444)
T ss_pred ecc
Confidence 654
No 370
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.23 E-value=0.081 Score=55.94 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHh---hhc----CCCeEEEEcchHHHHHHHHHHHHH
Q 012728 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIP---ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~---~l~----~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
++|-|.+++.. .+.+++|.|+.|||||.+..-- .+. ....+++++.|+..+.+..+++.+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 78999998864 3568999999999999654421 222 245789999999999998888875
No 371
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.21 E-value=0.34 Score=47.61 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.0
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
.+++.||.|+|||.++.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~ 57 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARV 57 (397)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 488999999999977644
No 372
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.18 E-value=0.34 Score=45.24 Aligned_cols=17 Identities=18% Similarity=0.043 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
.++++.+|+|+|||.++
T Consensus 59 ~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVA 75 (284)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 47999999999999766
No 373
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.18 E-value=2.6 Score=38.97 Aligned_cols=51 Identities=22% Similarity=0.284 Sum_probs=29.4
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHh-------CCCccEEEEeccCChhHHHHH
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LPDVPILALTATAAPKVQKDV 211 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~v~lSAT~~~~~~~~~ 211 (457)
...++|+||=+-+... -......+..+... .+...++.++||...+.....
T Consensus 153 ~~~D~ViIDT~G~~~~----d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~ 210 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN----KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQA 210 (272)
T ss_pred CCCCEEEEeCCCCCcc----hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHH
Confidence 4478999999877532 11222334443332 245567888998766554433
No 374
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.15 E-value=0.33 Score=50.14 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=25.7
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCCh
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~ 205 (457)
....+++||||+|.+.... .+.+...+...|..-++++.+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a------~naLLk~LEepp~~~~fIl~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA------FNALLKTLEEPPPHVKFIFATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHHHHcCCCCeEEEEEeCChh
Confidence 3457899999999986422 3455555555443333334445333
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.12 E-value=1.6 Score=41.30 Aligned_cols=53 Identities=17% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHH-------hCCCccEEEEeccCChhHHHHHHH
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-------YLPDVPILALTATAAPKVQKDVME 213 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~v~lSAT~~~~~~~~~~~ 213 (457)
...++||||=+-++... ......+..+.. ..|...++.++||...+.......
T Consensus 195 ~~~D~ViIDTaGr~~~~----~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~ 254 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNK----TNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKA 254 (318)
T ss_pred CCCCEEEEeCCCCCcCC----HHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHH
Confidence 45899999999875321 111233333332 224455788999977665554433
No 376
>PRK08006 replicative DNA helicase; Provisional
Probab=94.11 E-value=1 Score=45.19 Aligned_cols=148 Identities=16% Similarity=0.113 Sum_probs=65.1
Q ss_pred cCCCEEEEcCCCchhhHHHHH-h---hhcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEec-CCCcHHHHHHHHHHh
Q 012728 52 SGRDCFCLMPTGGGKSMCYQI-P---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDL 124 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l-~---~l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 124 (457)
.|.=+++.|.+|.|||..++= + +...+..+++++.-. -..|...++-. -++....+. +.........+....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM-~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~ 301 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEM-PGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTM 301 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccC-CHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 344567788999999965442 1 223456777776432 22344444443 122222121 223333333322211
Q ss_pred hcCCCcccEEEECCCcccCchhHHHHHhhhhc-CCccEEEEeccccccccCC-CCH-HHHHH----HHHHHHhCCCccEE
Q 012728 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFR-PSYRK----LSSLRNYLPDVPIL 197 (457)
Q Consensus 125 ~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~-~~l~~lViDEah~~~~~~~-~~~-~~~~~----l~~~~~~~~~~~~v 197 (457)
........+.+-...-+..........+.... +.+++||||=.|.+...+. +-+ ..+.. ++.+...+ +++++
T Consensus 302 ~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel-~ipVi 380 (471)
T PRK08006 302 GILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL-QVPVV 380 (471)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh-CCeEE
Confidence 11101123333211111111222223332222 3589999999998853221 112 11222 22222222 67888
Q ss_pred EEec
Q 012728 198 ALTA 201 (457)
Q Consensus 198 ~lSA 201 (457)
++|-
T Consensus 381 ~LsQ 384 (471)
T PRK08006 381 ALSQ 384 (471)
T ss_pred EEEe
Confidence 8874
No 377
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.11 Score=47.13 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 4799999999999976544
No 378
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.29 Score=46.17 Aligned_cols=66 Identities=14% Similarity=0.029 Sum_probs=42.1
Q ss_pred ccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhc
Q 012728 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76 (457)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~ 76 (457)
.+....|.+++=.+.+.++|++.-=+.--+|-...--..+...+.+++.+|+|+|||+.+-.-+-+
T Consensus 85 ~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386)
T KOG0737|consen 85 SEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKE 150 (386)
T ss_pred hhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHH
Confidence 455677888888888888888742222222333322222234578999999999999887444433
No 379
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=0.35 Score=45.99 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHc--C---CCEEEEcCCCchhhHHHH
Q 012728 39 FRDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~--~---~~~lv~a~TGsGKT~~~~ 71 (457)
++|||...+..+.. + +..++.+|.|.|||..+.
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~ 39 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFAR 39 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHH
Confidence 46899998888773 2 358899999999996554
No 380
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.00 E-value=0.52 Score=49.22 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=45.6
Q ss_pred CChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcC--CCEEEEcCCCchhhHHHHHhh---hcCC--CeEEEEcchHHHHH
Q 012728 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPA---LAKP--GIVLVVSPLIALME 92 (457)
Q Consensus 20 ~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~--~~~lv~a~TGsGKT~~~~l~~---l~~~--~~~lvl~P~~~L~~ 92 (457)
.+.++.....+.. ...++...-|.+.+..++++ +-+++.|.=|=|||.+.-+.+ .... ..++|.+|+.+=+.
T Consensus 197 ~~~~~~~~~~l~~-l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~ 275 (758)
T COG1444 197 PPLDPVFPRELYE-LCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQ 275 (758)
T ss_pred CCCCCCCCHHHhh-hhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHH
Confidence 3333333444444 23333444444455556654 357788999999997655332 2233 48999999988666
Q ss_pred HHHHH
Q 012728 93 NQVIG 97 (457)
Q Consensus 93 q~~~~ 97 (457)
...+.
T Consensus 276 ~Lf~f 280 (758)
T COG1444 276 TLFEF 280 (758)
T ss_pred HHHHH
Confidence 55544
No 381
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.87 E-value=0.16 Score=55.18 Aligned_cols=76 Identities=11% Similarity=0.111 Sum_probs=64.6
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCCCCCccEEE
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldip~v~~Vi 331 (457)
.+.+++|.++|..-|.+.++.+++. ++++..++|..+.+++..+++.+.+|+.+|+|+|.. +...+.+.++.++|
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 3568999999999999999888764 567888999999999999999999999999999984 44567888888877
Q ss_pred E
Q 012728 332 H 332 (457)
Q Consensus 332 ~ 332 (457)
.
T Consensus 579 I 579 (926)
T TIGR00580 579 I 579 (926)
T ss_pred e
Confidence 4
No 382
>PRK06620 hypothetical protein; Validated
Probab=93.86 E-value=0.28 Score=43.67 Aligned_cols=18 Identities=17% Similarity=0.181 Sum_probs=14.8
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++.||+|+|||....
T Consensus 45 ~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458999999999996543
No 383
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.85 E-value=1.4 Score=43.61 Aligned_cols=48 Identities=15% Similarity=0.250 Sum_probs=28.8
Q ss_pred ccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCccEEEEeccCChhHHHH
Q 012728 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKD 210 (457)
Q Consensus 159 l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~lSAT~~~~~~~~ 210 (457)
.++||||.+-+... -......+..+... .|+..++.++|+...+....
T Consensus 176 ~DvVIIDTAGr~~~----d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 176 ADVIIVDTAGRHAL----EEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred CCEEEEECCCcccc----hHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 38999999965422 12223444444443 25666788888887655443
No 384
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.97 Score=46.89 Aligned_cols=54 Identities=11% Similarity=0.041 Sum_probs=35.6
Q ss_pred ccccCCCCChHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHc-CCCEEEEcCCCchhhHHH
Q 012728 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQL-DAIQAVLS-GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~-~~i~~~~~-~~~~lv~a~TGsGKT~~~ 70 (457)
.+.+|++.|=-+++...+.+..+. |.|. +.+..-++ ...+++-+|+|+|||+.+
T Consensus 667 PnV~WdDVGGLeevK~eIldTIql----PL~hpeLfssglrkRSGILLYGPPGTGKTLlA 722 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQL----PLKHPELFSSGLRKRSGILLYGPPGTGKTLLA 722 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcC----cccChhhhhccccccceeEEECCCCCchHHHH
Confidence 467899998888877777764221 1111 33333333 446899999999999876
No 385
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=1.1 Score=45.40 Aligned_cols=58 Identities=14% Similarity=0.050 Sum_probs=38.5
Q ss_pred cccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 012728 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
=...+|.+.+-.+++...|+..-=...=+|-+.+++-.- .-..+++++|+|.|||+.+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~-~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID-APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC-CCCceEEeCCCCccHHHHH
Confidence 346789999988888888876422222234444443221 2356999999999999876
No 386
>PRK04328 hypothetical protein; Provisional
Probab=93.79 E-value=0.051 Score=49.66 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=34.0
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
.|..+++.+++|+|||...+ ...+.++..+++++ +.+-..+..+.+..+|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 45678899999999985432 33345677777777 33444556666776665
No 387
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.72 E-value=0.3 Score=48.33 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=16.6
Q ss_pred CCCEEEEcCCCchhhHHHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l 72 (457)
.+.+++.+|+|+|||+.+-.
T Consensus 217 p~gVLL~GPPGTGKT~LAra 236 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKA 236 (438)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 388
>PRK09165 replicative DNA helicase; Provisional
Probab=93.70 E-value=0.43 Score=48.31 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=55.6
Q ss_pred CCCEEEEcCCCchhhHHHHHh---h-hc--------------CCCeEEEEcchHHHHHHHHHHHHHc--CCceeEec-CC
Q 012728 53 GRDCFCLMPTGGGKSMCYQIP---A-LA--------------KPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS-ST 111 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~---~-l~--------------~~~~~lvl~P~~~L~~q~~~~~~~~--~~~~~~~~-~~ 111 (457)
|.=+++.|+||.|||..++-- + .. .+..+++++.- .-..|...++... ++....+. +.
T Consensus 217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~i~~~~ 295 (497)
T PRK09165 217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSKIRRGK 295 (497)
T ss_pred CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCC
Confidence 344778889999999654311 1 11 14567777643 3335555555442 33322222 12
Q ss_pred CcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 112 QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
................. ...+.+....-+.-......+.+......+++||||=.|.+..
T Consensus 296 l~~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 296 ISEEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred CCHHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 22233222222211111 1234433221121122233333333345589999999998853
No 389
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.70 E-value=0.5 Score=47.17 Aligned_cols=48 Identities=15% Similarity=0.012 Sum_probs=27.3
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hh---hhcCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.|.-+++.|+||+|||...+ +. +...+..+++++.- .-..+..+++..
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlE-m~~~~i~~R~~~ 245 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLE-MSAEQLAMRMLS 245 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCc-CCHHHHHHHHHH
Confidence 34457788999999996544 21 12235667777643 222344444443
No 390
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=93.66 E-value=1.8 Score=41.71 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=23.7
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCC-ccEEEEe
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALT 200 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~-~~~v~lS 200 (457)
.+..+++||||||.+... ..+.+......-|. ..++++|
T Consensus 139 ~g~~rVviIDeAd~l~~~------aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRN------AANAILKTLEEPPARALFILIS 178 (351)
T ss_pred cCCceEEEEEchhhcCHH------HHHHHHHHHhcCCCCceEEEEE
Confidence 456889999999998542 22445555555443 4444554
No 391
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.61 E-value=0.044 Score=50.05 Aligned_cols=23 Identities=35% Similarity=0.359 Sum_probs=16.3
Q ss_pred CEEEEcCCCchhhH--HHHHhhhcC
Q 012728 55 DCFCLMPTGGGKSM--CYQIPALAK 77 (457)
Q Consensus 55 ~~lv~a~TGsGKT~--~~~l~~l~~ 77 (457)
=++|.+|||||||. ++++--+.+
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~ 151 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINK 151 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhc
Confidence 47889999999984 444544443
No 392
>PHA02542 41 41 helicase; Provisional
Probab=93.61 E-value=0.89 Score=45.61 Aligned_cols=31 Identities=26% Similarity=0.048 Sum_probs=20.7
Q ss_pred CEEEEcCCCchhhHHHHHh---hhcCCCeEEEEc
Q 012728 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVS 85 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~ 85 (457)
=+++.|++|.|||..++-- +...+..+++++
T Consensus 192 LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 192 LNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred EEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 4667889999999655421 223466777776
No 393
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=93.60 E-value=0.079 Score=55.16 Aligned_cols=57 Identities=25% Similarity=0.245 Sum_probs=46.4
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCCceeEecC
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~ 110 (457)
+++++.||||||||..+++|.+.. .+.+||+=|.-++........++.|..+..++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~FnP 197 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFAP 197 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEecC
Confidence 489999999999999999997654 678899999999988877777777766655544
No 394
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.58 E-value=0.55 Score=50.91 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.++++.+|+|+|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999997653
No 395
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.58 E-value=0.48 Score=49.13 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=14.8
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
..|+.||.|+|||..+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~ 57 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARI 57 (585)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999976643
No 396
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.55 E-value=1.2 Score=43.65 Aligned_cols=48 Identities=19% Similarity=0.215 Sum_probs=28.5
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHH
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~ 209 (457)
.+..+++||||+|.+.... .+.+......-|...++++++|-+.....
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llp 162 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLP 162 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChH
Confidence 3457899999999985422 23444455554545556666665444433
No 397
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.55 E-value=2.9 Score=41.16 Aligned_cols=48 Identities=8% Similarity=0.230 Sum_probs=29.4
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHH
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQK 209 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~ 209 (457)
..++|+||=+-+... -......+..+.... |...++.++||.......
T Consensus 182 ~~DvViIDTaGr~~~----d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~ 230 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQ----EDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA 230 (429)
T ss_pred CCCEEEEECCCCCcc----hHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH
Confidence 478999999976432 123344555554433 455677888887755543
No 398
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=93.54 E-value=0.31 Score=46.08 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.++++.+|+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999996553
No 399
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=93.54 E-value=0.34 Score=43.75 Aligned_cols=90 Identities=14% Similarity=0.200 Sum_probs=66.5
Q ss_pred CCceEeecCCCCHHHHHHHHHHHhcC----CceEEEEeccccccCCCCCccEEEEecCCCCHHHHHHHhcccC-CCCCCc
Q 012728 282 GISCAAYHAGLNDKARSSVLDDWISS----RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (457)
Q Consensus 282 g~~~~~~~~~~~~~~r~~~~~~f~~g----~~~vLvaT~~~~~Gldip~v~~Vi~~~~p~s~~~~~Qr~GRag-R~g~~g 356 (457)
++.+..++|+.+... -.|.++ ...|+|.-+.++||+-+++..+-.....+....+++||.=..| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455566665443322 223333 2779999999999999999999988888888889999876677 777788
Q ss_pred eEEEEeccchHHHHHHHHHh
Q 012728 357 KSLLYYGMDDRRRMEFILSK 376 (457)
Q Consensus 357 ~~~~~~~~~~~~~~~~i~~~ 376 (457)
.|-++.++.-.+.+..+...
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~ 204 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEA 204 (239)
T ss_pred ceEEecCHHHHHHHHHHHHH
Confidence 89899887777776666544
No 400
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.53 E-value=1.2 Score=45.90 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHH--Hhhh---cCCCeEEEEcchHHHHHHHHH
Q 012728 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~--l~~l---~~~~~~lvl~P~~~L~~q~~~ 96 (457)
..+.+.+.|+..|+...+..- +-...+.+..++..|==.|||.... +..+ ..+-++++.+|.+..++..++
T Consensus 227 ~a~r~~~~lk~~Fdi~~~s~~----~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~ 302 (738)
T PHA03368 227 HAERVERFLRTVFNTPLFSDA----AVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFE 302 (738)
T ss_pred HHHHHHHHHHHHcCCccccHH----HHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHH
Confidence 445677778887877765542 2223366788888999999996433 2222 248899999999999999888
Q ss_pred HHHHc
Q 012728 97 GLKEK 101 (457)
Q Consensus 97 ~~~~~ 101 (457)
++...
T Consensus 303 eI~~~ 307 (738)
T PHA03368 303 EIGAR 307 (738)
T ss_pred HHHHH
Confidence 87763
No 401
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.53 E-value=0.12 Score=55.31 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=47.7
Q ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHH--h-hhc----CCCeEEEEcchHHHHHHHHHHHHHc
Q 012728 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI--P-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l--~-~l~----~~~~~lvl~P~~~L~~q~~~~~~~~ 101 (457)
..|+|-|.+++.. ...+++|.|..|||||.+..- . ++. ....+++++-|+.-+.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4589999999975 346899999999999965432 2 122 1357999999999888888888764
No 402
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.49 E-value=0.14 Score=57.86 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=46.9
Q ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhh---hcC---CCeEEEEcchHHHHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK---PGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~---l~~---~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
++|+-|.+++. ..+++++|.|..|||||.+..--+ +.. ...+++++=|++-+.++.+++..
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 36899999997 367899999999999997754222 222 34599999999999887777655
No 403
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.46 E-value=0.33 Score=47.12 Aligned_cols=15 Identities=27% Similarity=0.248 Sum_probs=13.2
Q ss_pred CCEEEEcCCCchhhH
Q 012728 54 RDCFCLMPTGGGKSM 68 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~ 68 (457)
+-+++.||+|+|||-
T Consensus 114 nplfi~G~~GlGKTH 128 (408)
T COG0593 114 NPLFIYGGVGLGKTH 128 (408)
T ss_pred CcEEEECCCCCCHHH
Confidence 468999999999995
No 404
>PRK07004 replicative DNA helicase; Provisional
Probab=93.31 E-value=0.61 Score=46.71 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=53.8
Q ss_pred cCCCEEEEcCCCchhhHHHH-Hh---hhcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEe-cCCCcHHHHHHHHHHh
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDL 124 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~ 124 (457)
.|.=+++.|.||+|||..++ +. ++..+..+++++.- .-..|...++-. -++....+ .+.........+....
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~ 290 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAV 290 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 34557788899999996544 21 23346667777532 222344444322 11222211 1222333332222221
Q ss_pred hcCCCcccEEEECCCcccCchhHHHHHhhhh-cCCccEEEEeccccccc
Q 012728 125 DSGKPSLRLLYVTPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISS 172 (457)
Q Consensus 125 ~~~~~~~~i~~~t~~~i~t~~~~~~l~~~~~-~~~l~~lViDEah~~~~ 172 (457)
..- .+..+.+...--+..........+... .+.+++||||=.+.+..
T Consensus 291 ~~l-~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~ 338 (460)
T PRK07004 291 QKM-SEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSG 338 (460)
T ss_pred HHH-hcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccC
Confidence 111 113344322111211222222233322 23589999999999864
No 405
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.29 E-value=0.39 Score=48.27 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.||+|+|||+.+
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 57999999999999876
No 406
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.27 E-value=0.48 Score=44.15 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+.+++++|||+|||.+..
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457789999999996543
No 407
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.25 E-value=0.15 Score=48.69 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=28.2
Q ss_pred HHcCCCEEEEcCCCchhhHHH--HHhhhcCCCeEEEEcchHHHH
Q 012728 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIALM 91 (457)
Q Consensus 50 ~~~~~~~lv~a~TGsGKT~~~--~l~~l~~~~~~lvl~P~~~L~ 91 (457)
+..++++++.+|||||||... ++..+....+++.+=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 335689999999999999532 222233355677777776663
No 408
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.19 E-value=0.41 Score=48.94 Aligned_cols=78 Identities=22% Similarity=0.239 Sum_probs=65.8
Q ss_pred cCCccEEEEeCCcccHHHHH----HHHHhCCCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCCCCCccEE
Q 012728 256 NGDTCAIVYCLERTTCDELS----AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLV 330 (457)
Q Consensus 256 ~~~~~~iIf~~s~~~~~~l~----~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldip~v~~V 330 (457)
..+.++...++|---|++.+ ++|...|+.+.++.|.+..+.|.++++...+|+++++|.|-+ +...+++.+.-+|
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLV 388 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLV 388 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEE
Confidence 45678999999976665555 455556899999999999999999999999999999999987 5668999999888
Q ss_pred EEe
Q 012728 331 CHF 333 (457)
Q Consensus 331 i~~ 333 (457)
|.-
T Consensus 389 IiD 391 (677)
T COG1200 389 IID 391 (677)
T ss_pred EEe
Confidence 853
No 409
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.17 E-value=0.31 Score=45.78 Aligned_cols=53 Identities=19% Similarity=0.305 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCchhhHHH--HHhhhcC---CCeEEEEcchHHH
Q 012728 38 QFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~--~l~~l~~---~~~~lvl~P~~~L 90 (457)
.+++.|.+.+..+. .+++++++++||||||... ++..+.. ..+++++=...++
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 35667777776655 4578999999999999542 2222221 4677777777776
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.11 E-value=2.1 Score=42.93 Aligned_cols=56 Identities=20% Similarity=0.153 Sum_probs=29.7
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHc
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
+...++++||.+-+... -......+..+.... |...++.++||........+...+
T Consensus 332 L~d~d~VLIDTaGr~~~----d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f 388 (484)
T PRK06995 332 LRNKHIVLIDTIGMSQR----DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAY 388 (484)
T ss_pred ccCCCeEEeCCCCcChh----hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHh
Confidence 34467899999754311 111112222222211 333578889998887666555544
No 411
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.10 E-value=0.25 Score=55.01 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=63.5
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-ccccCCCCCccEEE
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-~~~Gldip~v~~Vi 331 (457)
.+.+++|.++|+.-+.++++.+++. ++.+..+++..+..++.++++...+|..+|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999888753 467788999999999999999999999999999974 44456777888877
Q ss_pred E
Q 012728 332 H 332 (457)
Q Consensus 332 ~ 332 (457)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 412
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.08 E-value=0.55 Score=44.96 Aligned_cols=17 Identities=35% Similarity=0.575 Sum_probs=15.7
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+|+++.+|+|+|||+.+
T Consensus 385 RNilfyGPPGTGKTm~A 401 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFA 401 (630)
T ss_pred hheeeeCCCCCCchHHH
Confidence 58999999999999876
No 413
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.99 E-value=2.4 Score=41.73 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=33.3
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhC-CCccEEEEeccCChhHHHHHHHHcC
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~lSAT~~~~~~~~~~~~~~ 216 (457)
+...++++||.+-+. ..-......+..+.... +...++.++||........+...+.
T Consensus 267 l~~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 267 LRGKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred hcCCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 334678999986332 11122234454443322 2345788999998887777666553
No 414
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.98 E-value=0.061 Score=49.49 Aligned_cols=18 Identities=33% Similarity=0.573 Sum_probs=16.0
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.|+++.+|||||||+.+.
T Consensus 98 SNILLiGPTGsGKTlLAq 115 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred ccEEEECCCCCcHHHHHH
Confidence 489999999999998765
No 415
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.94 E-value=0.24 Score=46.89 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHH-cCCCEEEEcCCCchhhHHHH--Hhh---hcCCCeEEEEcchHHH
Q 012728 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ--IPA---LAKPGIVLVVSPLIAL 90 (457)
Q Consensus 39 ~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~--l~~---l~~~~~~lvl~P~~~L 90 (457)
+++.|.+.+..+. .++++++.++||+|||...- +.. .....+++++-.+.++
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 5688888887654 56799999999999994321 111 1224566666666665
No 416
>PRK10867 signal recognition particle protein; Provisional
Probab=92.93 E-value=2.9 Score=41.37 Aligned_cols=42 Identities=21% Similarity=0.183 Sum_probs=24.4
Q ss_pred EEEEcCCCchhhHHHH-Hhh-h-cC-CCeEEEEc--chHHHHHHHHHH
Q 012728 56 CFCLMPTGGGKSMCYQ-IPA-L-AK-PGIVLVVS--PLIALMENQVIG 97 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~-l~~-l-~~-~~~~lvl~--P~~~L~~q~~~~ 97 (457)
+++++++|+|||.+.. ++. + .. +.+++++. +.|.-+.++...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~ 150 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKT 150 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHH
Confidence 6788999999996544 222 2 23 45555544 455554444433
No 417
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.93 E-value=0.21 Score=47.77 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
.++++.+|+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 479999999999997664
No 418
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=92.91 E-value=0.2 Score=48.74 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
+.+++.||+|+|||..+-.
T Consensus 157 ~gvLL~GppGtGKT~laka 175 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKA 175 (364)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999976543
No 419
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=92.90 E-value=0.52 Score=44.74 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHcCC------CEEEEcCCCchhhHHHHHhhhcCCCeEEEEcch
Q 012728 39 FRDKQLDAIQAVLSGR------DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~~------~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~ 87 (457)
.|..|...+..++..+ .+.+.|.+|||||..-.-..-..+...+++.+.
T Consensus 10 ~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ 64 (438)
T KOG2543|consen 10 CRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCV 64 (438)
T ss_pred chHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehH
Confidence 6789999998888654 248899999999975432221224456666653
No 420
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.89 E-value=0.046 Score=54.34 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHHHHHh--cCCceEEEEeccccccCCCCCccEEEEecC-----------CCC----HHHHHHHhcccCCC
Q 012728 295 KARSSVLDDWI--SSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----------PKS----MEAFYQESGRAGRD 352 (457)
Q Consensus 295 ~~r~~~~~~f~--~g~~~vLvaT~~~~~Gldip~v~~Vi~~~~-----------p~s----~~~~~Qr~GRagR~ 352 (457)
++-...+.... +.-++++++.|.+.+|.|+-+. +|+ ... ...=.|-+||..|-
T Consensus 315 ~e~~lllnsled~dnpir~if~vd~lnegwdvlnl-----fdmr~i~rrk~~an~kk~~~~TikekQLIGRGaRY 384 (812)
T COG3421 315 EESMLLLNSLEDRDNPIRVIFSVDKLNEGWDVLNL-----FDMRGIKRRKKMANDKKLAAATIKEKQLIGRGARY 384 (812)
T ss_pred HHHHHHHhhhhhcCCCeEEEEEeecccccchhhhh-----hhHHHHHHHHhhhcccchhhhhhhHHHHHhcccee
Confidence 34445555554 4568899999999999986432 221 111 33447889998884
No 421
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=92.86 E-value=0.14 Score=53.22 Aligned_cols=59 Identities=19% Similarity=0.232 Sum_probs=47.7
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCCceeEecCCC
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQ 112 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~ 112 (457)
.++++.||||+|||..+++|.+.. ++-++|+=|..++........++.|.++..+....
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP~~ 284 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDPTN 284 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 479999999999999999998755 67788888999998877777777777766665543
No 422
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.83 E-value=4.6 Score=39.92 Aligned_cols=50 Identities=20% Similarity=0.203 Sum_probs=28.0
Q ss_pred CEEEEcCCCchhhHHHH-Hhh-h--cCCCeEEEEc--chHHHHHHHHHHH-HHcCCc
Q 012728 55 DCFCLMPTGGGKSMCYQ-IPA-L--AKPGIVLVVS--PLIALMENQVIGL-KEKGIA 104 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~-l~~-l--~~~~~~lvl~--P~~~L~~q~~~~~-~~~~~~ 104 (457)
-+++++++|+|||.+.. ++. + ..+.+++++. +.|.-+.++.+.+ ...++.
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 37789999999997644 222 2 2355555554 3444444544443 334433
No 423
>PRK06321 replicative DNA helicase; Provisional
Probab=92.83 E-value=0.91 Score=45.54 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=53.3
Q ss_pred CCEEEEcCCCchhhHHHHHh----hhcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEec-CCCcHHHHHHHHHHhhc
Q 012728 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDS 126 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~----~l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 126 (457)
.=+++.|.+|.|||...+-- +...+..+++++.- .-..|...++.. .++....+. .................
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 305 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLE-MTVDQLIHRIICSRSEVESKKISVGDLSGRDFQRIVSVVNE 305 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEecc-CCHHHHHHHHHHhhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 34677889999999654321 12335667777532 222344444432 223222221 22223333322222211
Q ss_pred CCCcccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 127 ~~~~~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
-. +..+++.-..-+..........+......+++||||=.+.+..
T Consensus 306 l~-~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 350 (472)
T PRK06321 306 MQ-EHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSG 350 (472)
T ss_pred HH-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCC
Confidence 11 1233332111111122333333333345589999999998853
No 424
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.63 Score=47.32 Aligned_cols=55 Identities=15% Similarity=0.080 Sum_probs=35.8
Q ss_pred ccccCCCCChHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 012728 13 QTQKNKPLHEKEALVKLLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 13 ~~~~~~~~~l~~~~~~~l~~~--~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
.+..|++.+=-+++.+.|++. ++..++-.+..-.+ ..-+.+++.+|+|+|||+++
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi---~ppkGVLlyGPPGC~KT~lA 485 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGI---SPPKGVLLYGPPGCGKTLLA 485 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcC---CCCceEEEECCCCcchHHHH
Confidence 456799999888888888753 22222222222111 12378999999999999887
No 425
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=92.80 E-value=0.61 Score=45.03 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=16.7
Q ss_pred cCCCEEEEcCCCchhhHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~ 70 (457)
+|+..++.||.|+|||...
T Consensus 168 kGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred cCceEEEeCCCCCChhHHH
Confidence 6899999999999999543
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.76 E-value=2.3 Score=44.91 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=33.1
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHh-CCCccEEEEeccCChhHHHHHHHHc
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESL 215 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~-~~~~~~v~lSAT~~~~~~~~~~~~~ 215 (457)
..++|+||=+-+... -......+..+... .|...++.++||...+...++.+.+
T Consensus 263 ~~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f 317 (767)
T PRK14723 263 DKHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAY 317 (767)
T ss_pred CCCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHH
Confidence 458899998876432 22233444444432 2455678889998877766666555
No 427
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=92.75 E-value=0.17 Score=52.37 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=46.4
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcC-CceeEecCC
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLSST 111 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~ 111 (457)
.++++.||||+|||..+.+|.+.. ++-++|+=|.-++.......-++.| .++..+...
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfdP~ 271 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLDPT 271 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 589999999999999999998655 7789999999999887776666666 555555443
No 428
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.67 E-value=0.54 Score=44.72 Aligned_cols=41 Identities=22% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
+...+++|||||.+.. .....+.......+....+++++.-
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCC
Confidence 4578999999999854 2234555555555554455555543
No 429
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=92.65 E-value=0.58 Score=47.13 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCchhhHHH
Q 012728 53 GRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~ 70 (457)
.+.+++.+|+|+|||..+
T Consensus 216 p~GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIA 233 (512)
T ss_pred CcceEEECCCCCcHHHHH
Confidence 367999999999999765
No 430
>PRK08506 replicative DNA helicase; Provisional
Probab=92.65 E-value=0.73 Score=46.37 Aligned_cols=118 Identities=16% Similarity=0.090 Sum_probs=53.7
Q ss_pred CCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEec-CCCcHHHHHHHHHHhhc
Q 012728 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDS 126 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~ 126 (457)
|.-+++.|.||.|||..++-. +...+..+++++.- .=..|...++.. .++....+. .................
T Consensus 192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 270 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLE-MPAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDE 270 (472)
T ss_pred CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 445777889999999654421 23346677777643 333455555433 223222111 22222222222111111
Q ss_pred CCCcccEEEECCCcccCchhHHHHHhhhh-cCCccEEEEeccccccc
Q 012728 127 GKPSLRLLYVTPELTATPGFMSKLKKIHS-RGLLNLVAIDEAHCISS 172 (457)
Q Consensus 127 ~~~~~~i~~~t~~~i~t~~~~~~l~~~~~-~~~l~~lViDEah~~~~ 172 (457)
.. +..+++-...-+........+.+... ...+++||||=.+.+..
T Consensus 271 l~-~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~ 316 (472)
T PRK08506 271 LS-KKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSG 316 (472)
T ss_pred HH-cCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccC
Confidence 11 12333322111111122222233222 23589999999998853
No 431
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.56 E-value=1.1 Score=38.19 Aligned_cols=56 Identities=23% Similarity=0.347 Sum_probs=36.9
Q ss_pred HhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChhHHH
Q 012728 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (457)
Q Consensus 151 ~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~~~~ 209 (457)
........+++||+||.--.+.+| +-+. ..+..++...|..+-|.+|+.-.+...-
T Consensus 115 ~~~l~~~~ydlviLDEl~~al~~g--~l~~-eeV~~~l~~kP~~~~vIiTGr~ap~~li 170 (198)
T COG2109 115 KEALADGKYDLVILDELNYALRYG--LLPL-EEVVALLKARPEHTHVIITGRGAPPELI 170 (198)
T ss_pred HHHHhCCCCCEEEEehhhHHHHcC--CCCH-HHHHHHHhcCCCCcEEEEECCCCCHHHH
Confidence 334444569999999998887776 3322 5566667777766667777765554433
No 432
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.56 E-value=0.55 Score=47.21 Aligned_cols=82 Identities=24% Similarity=0.224 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCCCCCH----HHHHHHHHHHc--CCCEEEEcCCCchhhHHHHH--hh-hc------CCCeEEEEcchH
Q 012728 24 EALVKLLRWHFGHAQFRD----KQLDAIQAVLS--GRDCFCLMPTGGGKSMCYQI--PA-LA------KPGIVLVVSPLI 88 (457)
Q Consensus 24 ~~~~~~l~~~~g~~~~~~----~Q~~~i~~~~~--~~~~lv~a~TGsGKT~~~~l--~~-l~------~~~~~lvl~P~~ 88 (457)
+-+...|+++ --.++++ +|.+==..+.. ++-++|++..|||||.+++- +- +. ..+.++|+.|.+
T Consensus 192 EvL~~~Lek~-ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~ 270 (747)
T COG3973 192 EVLQRVLEKN-SSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNR 270 (747)
T ss_pred HHHHHHHHhc-cchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcH
Confidence 4477788775 3344554 44444344443 45688999999999977652 11 11 145599999999
Q ss_pred HHHHHHHHHHHHcCCcee
Q 012728 89 ALMENQVIGLKEKGIAGE 106 (457)
Q Consensus 89 ~L~~q~~~~~~~~~~~~~ 106 (457)
-...-..+.+-.+|....
T Consensus 271 vFleYis~VLPeLGe~~V 288 (747)
T COG3973 271 VFLEYISRVLPELGEEGV 288 (747)
T ss_pred HHHHHHHHhchhhccCce
Confidence 998877777777776543
No 433
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.49 E-value=1 Score=48.93 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.5
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
++.++.||+|+|||...-
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997653
No 434
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=92.37 E-value=0.93 Score=40.59 Aligned_cols=52 Identities=19% Similarity=0.091 Sum_probs=35.4
Q ss_pred cCCCEEEEcCCCchhhHHHH-H--hhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~-l--~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.|.-+++.+++|+|||...+ + ..+.++..+++++-.. -..+..+++..++..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSKGWD 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHcCCC
Confidence 35678899999999985432 3 2345577888877643 456777777777643
No 435
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.31 E-value=0.24 Score=45.69 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=26.1
Q ss_pred HHHHHHcCCCEEEEcCCCchhhHHHHHhhhcCCCeEEEE
Q 012728 46 AIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (457)
Q Consensus 46 ~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl 84 (457)
++..+..|.++++.+|+|+|||..+...+-..+..++.+
T Consensus 14 ~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 14 ALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 444555788999999999999976653332334444444
No 436
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.22 E-value=0.36 Score=41.90 Aligned_cols=33 Identities=18% Similarity=0.210 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHH-cCCCEEEEcCCCchhhHH
Q 012728 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMC 69 (457)
Q Consensus 37 ~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~ 69 (457)
..+.+.|.+.+.... .+..+++.+|||+|||..
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 456788888887766 467899999999999964
No 437
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=92.21 E-value=0.21 Score=42.61 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=22.9
Q ss_pred EEEcCCCchhhHHHHHhhhc--C--CCeEEEEcchHHHHHHHHHHH
Q 012728 57 FCLMPTGGGKSMCYQIPALA--K--PGIVLVVSPLIALMENQVIGL 98 (457)
Q Consensus 57 lv~a~TGsGKT~~~~l~~l~--~--~~~~lvl~P~~~L~~q~~~~~ 98 (457)
++.|+-|-|||.+.-+.+-. . ..+++|.+|+.+=++...+.+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~ 46 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFA 46 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHH
Confidence 46789999999765554332 2 247999999988666555443
No 438
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.20 E-value=1.3 Score=41.84 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=35.4
Q ss_pred CCCCHHHHHHHHH-HHcCCCEEEEcCCCchhhHH--HHHhhhcCCCeEEEEcchHHH
Q 012728 37 AQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (457)
Q Consensus 37 ~~~~~~Q~~~i~~-~~~~~~~lv~a~TGsGKT~~--~~l~~l~~~~~~lvl~P~~~L 90 (457)
..+.+.|..-+.. +.++++++++++||+|||.. +++..+-...+++.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 3467777775544 44678999999999999943 233334445566666555554
No 439
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=92.20 E-value=1.2 Score=44.62 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=67.9
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccccc-CCCCC
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-ldip~ 326 (457)
.+..+||.++|++-|.++...+.+. ++.+..++|+.+...+..-++ .-.+|+|+|+ .+..| +|+.+
T Consensus 164 ~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 164 DGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred CCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCChHHHHHHHcCCccccc
Confidence 3556999999999999999888765 455788999988765544332 2468999994 67776 68889
Q ss_pred ccEEEE--------ecCCCCHHHHHHHhcccCC
Q 012728 327 VRLVCH--------FNIPKSMEAFYQESGRAGR 351 (457)
Q Consensus 327 v~~Vi~--------~~~p~s~~~~~Qr~GRagR 351 (457)
+++++. .++-..+...++.++|.-|
T Consensus 240 v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred eeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 999884 3333456778888888776
No 440
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.10 E-value=2.7 Score=39.77 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=14.1
Q ss_pred CEEEEcCCCchhhHHH
Q 012728 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 40 HLLFAGPPGTGKTTAA 55 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5899999999999765
No 441
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.08 E-value=1.4 Score=39.58 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=24.9
Q ss_pred HHHHcCC-CEEEEcCCCchhhHHHH--HhhhcCCCeEEEEcchH
Q 012728 48 QAVLSGR-DCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLI 88 (457)
Q Consensus 48 ~~~~~~~-~~lv~a~TGsGKT~~~~--l~~l~~~~~~lvl~P~~ 88 (457)
+.+..|+ -+.+.++-|||||...- ...+.....++++.|-.
T Consensus 45 ~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~ 88 (269)
T COG3267 45 AAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKP 88 (269)
T ss_pred HHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCc
Confidence 3444566 56789999999997654 23333444555444433
No 442
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=92.05 E-value=1.7 Score=41.95 Aligned_cols=16 Identities=25% Similarity=0.299 Sum_probs=13.8
Q ss_pred CEEEEcCCCchhhHHH
Q 012728 55 DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~ 70 (457)
..++.||+|+|||..+
T Consensus 38 ~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIA 53 (355)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999655
No 443
>PRK06749 replicative DNA helicase; Provisional
Probab=92.04 E-value=1.6 Score=43.28 Aligned_cols=48 Identities=13% Similarity=-0.063 Sum_probs=26.8
Q ss_pred cCCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.|.=+++.|.||.|||..++-- +...+..+++++.-. -..|...++-.
T Consensus 185 ~G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEM-s~~ql~~R~ls 235 (428)
T PRK06749 185 EGDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEM-SSKQLLKRMAS 235 (428)
T ss_pred CCcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeC-CHHHHHHHHHH
Confidence 3445777889999999654411 123355677776432 22344444443
No 444
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.93 E-value=5.2 Score=42.31 Aligned_cols=140 Identities=15% Similarity=0.198 Sum_probs=76.4
Q ss_pred cEEEEeccCChhHHHHHHHHcCCCCCeEEecCC--CCCceEEEEEEeC-------------chhhHHHHHHHHHHh---c
Q 012728 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSF--NRPNLFYEVRYKD-------------LLDDAYADLCSVLKA---N 256 (457)
Q Consensus 195 ~~v~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~-------------~~~~~~~~l~~~l~~---~ 256 (457)
-+++.|+|+.|.. .+...+++.-+..+.... +..++...+.... ...+....|.+.+.. .
T Consensus 482 sIiLtSGTLsP~~--s~~~El~~~f~~~lEn~hii~~~qv~~~vv~~Gp~~~ql~sty~nr~~~ey~~~lg~~i~~v~rv 559 (945)
T KOG1132|consen 482 SIILTSGTLSPMD--SFASELGLEFKIQLENPHIINKSQVWVGVVPKGPDGAQLDSTYGNRFTPEYLSELGEAILNVARV 559 (945)
T ss_pred eEEEecccccCch--hHHHHhCCccceeeecchhccccceEEEeeccCCCccccccccccccCHHHHHHHHHHHHHHHhh
Confidence 4889999998874 446667776555554432 2222222222211 011233333333322 2
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhCC-------CceEeecCCCCHHHHHHHHHHHhc--------CCceEEEEecccccc
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAGG-------ISCAAYHAGLNDKARSSVLDDWIS--------SRKQVVVATVAFGMG 321 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~g-------~~~~~~~~~~~~~~r~~~~~~f~~--------g~~~vLvaT~~~~~G 321 (457)
-...+|||.++....+.+..+.+..+ .+-..+--. +..+-.+++..|.+ |-.-..||--..++|
T Consensus 560 Vp~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~l~vEPr-~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEG 638 (945)
T KOG1132|consen 560 VPYGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKKLVVEPR-SKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEG 638 (945)
T ss_pred cccceEEeccchHHHHHHHHHHHcchHHHHhhcccCceeccC-CccchHHHHHHHHHHhhCccccceEEEEEecccccCC
Confidence 23349999999987777755554321 111111111 22222333444432 334467888899999
Q ss_pred CCCCC--ccEEEEecCCC
Q 012728 322 IDRKD--VRLVCHFNIPK 337 (457)
Q Consensus 322 ldip~--v~~Vi~~~~p~ 337 (457)
+|+.+ .+.||..++|.
T Consensus 639 lDFsD~~~RaVI~tGlPy 656 (945)
T KOG1132|consen 639 LDFSDDNGRAVIITGLPY 656 (945)
T ss_pred CCccccCCceeEEecCCC
Confidence 99975 57899999885
No 445
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.93 E-value=0.2 Score=49.45 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHcCC--CEEEEcCCCchhhHH
Q 012728 39 FRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMC 69 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~~~--~~lv~a~TGsGKT~~ 69 (457)
+.+.|.+.+..+++.. =+++.+|||||||.+
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 4688888888888654 367889999999965
No 446
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.93 E-value=0.22 Score=41.21 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=25.4
Q ss_pred EEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHHH
Q 012728 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~q 93 (457)
.++.+|.|+|||..|......-.+ .++++.+.+++.|
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 467789999999877543333233 5667777787766
No 447
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.92 E-value=1 Score=43.81 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=14.3
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.||+|+|||..+
T Consensus 40 ~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 40 QALLFCGPRGVGKTTCA 56 (367)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36889999999999654
No 448
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.91 E-value=1 Score=46.70 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=15.1
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
..|+.||.|+|||.++.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~ 57 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARV 57 (620)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 588999999999977643
No 449
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=91.81 E-value=1.8 Score=43.22 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.3
Q ss_pred CCEEEEcCCCchhhHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l 72 (457)
+..++.||.|+|||..+..
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~ 58 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARI 58 (451)
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 3578999999999976643
No 450
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.71 E-value=1.6 Score=44.94 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=15.0
Q ss_pred CEEEEcCCCchhhHHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQI 72 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l 72 (457)
..++.||.|+|||.++..
T Consensus 40 ayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999977643
No 451
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=91.71 E-value=0.89 Score=42.96 Aligned_cols=48 Identities=21% Similarity=0.129 Sum_probs=29.8
Q ss_pred CCCEEEEcCCCchhhHHHHH---hhhcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 53 GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l---~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
|.-+.+.+|+|+|||..++- .....++.++++..-..+-.+ .++.+|+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGv 105 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGV 105 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCC
Confidence 34677899999999965442 223447788888665444332 3444444
No 452
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.70 E-value=0.48 Score=48.32 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=35.3
Q ss_pred cCCCEEEEcCCCchhhHHHH---HhhhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~---l~~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.|..+++.+++|+|||.... ...+..+.++++++-. +-..+..+.+..+|..
T Consensus 272 ~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e-~~~~~i~~~~~~~g~~ 326 (509)
T PRK09302 272 RGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE-ESRAQLIRNARSWGID 326 (509)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec-CCHHHHHHHHHHcCCC
Confidence 35668889999999996433 2334557788888654 3456677777777653
No 453
>PRK09354 recA recombinase A; Provisional
Probab=91.69 E-value=0.87 Score=43.45 Aligned_cols=48 Identities=21% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHHcCCc
Q 012728 54 RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 104 (457)
.-+.+.+|+|+|||...+-. +...++.++++..-.++-. +.++.+|+.
T Consensus 61 ~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvd 111 (349)
T PRK09354 61 RIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVD 111 (349)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCC
Confidence 45778999999999655432 2345778888887666543 345555543
No 454
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=91.68 E-value=1.7 Score=39.15 Aligned_cols=17 Identities=24% Similarity=0.483 Sum_probs=15.4
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.++..+|+|+|||+.+
T Consensus 206 KGvLmYGPPGTGKTlmA 222 (424)
T KOG0652|consen 206 KGVLMYGPPGTGKTLMA 222 (424)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 67999999999999876
No 455
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.65 E-value=0.28 Score=50.61 Aligned_cols=76 Identities=22% Similarity=0.305 Sum_probs=56.5
Q ss_pred HHHHhcCCceEEEEeccccccCCCCCcc--------EEEEecCCCCHHHHHHHhcccCCCCCC---ceEEEEeccchHHH
Q 012728 301 LDDWISSRKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQLP---SKSLLYYGMDDRRR 369 (457)
Q Consensus 301 ~~~f~~g~~~vLvaT~~~~~Gldip~v~--------~Vi~~~~p~s~~~~~Qr~GRagR~g~~---g~~~~~~~~~~~~~ 369 (457)
-++|.+|+..|-|-+.+++-||-+..-+ +=|-..+|||...-+|..||+.|.++. .+++++.+-.-.+.
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 3679999999999999999999887544 445678999999999999999998763 34444444444444
Q ss_pred HHHHHHh
Q 012728 370 MEFILSK 376 (457)
Q Consensus 370 ~~~i~~~ 376 (457)
+..++.+
T Consensus 930 FAS~VAK 936 (1300)
T KOG1513|consen 930 FASIVAK 936 (1300)
T ss_pred HHHHHHH
Confidence 4444433
No 456
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.59 E-value=1.2 Score=43.37 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcCCCeEEEEcchHHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl~P~~~L~~ 92 (457)
+.+++.+|.|+|||+..-.-+.+.+....-++|. +|+.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~~atff~iSas-sLts 224 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATESGATFFNISAS-SLTS 224 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhhcceEeeccHH-Hhhh
Confidence 5789999999999987655555555555556664 4443
No 457
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.65 Score=50.11 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=40.3
Q ss_pred cccccccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHH
Q 012728 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~ 70 (457)
+.++...|++.+....+...|++.-=+.-++|-+.+-+ .+..-+.++..+|.|+|||+.+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~a 316 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMA 316 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHH
Confidence 56778899999998998888988422222223222211 1223467999999999999865
No 458
>PHA00350 putative assembly protein
Probab=91.49 E-value=0.92 Score=44.08 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.3
Q ss_pred EEEEcCCCchhhHHHH----HhhhcCCC
Q 012728 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~----l~~l~~~~ 79 (457)
.++.+..|||||+.++ ++++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4678999999997654 45555554
No 459
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.47 E-value=1.3 Score=39.15 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=24.3
Q ss_pred cCCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcch
Q 012728 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~ 87 (457)
.|.-+.+.+|+|+|||...+-.+ ...+..++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34568899999999996544322 2346677777654
No 460
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.45 E-value=0.29 Score=46.62 Aligned_cols=39 Identities=13% Similarity=0.108 Sum_probs=26.0
Q ss_pred cCCCEEEEcCCCchhhHH--HHHhhhcCCCeEEEEcchHHH
Q 012728 52 SGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~--~~l~~l~~~~~~lvl~P~~~L 90 (457)
.+.+++++++||||||.. +++..+....+++.+=-+.+|
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 568999999999999943 333334445666665444454
No 461
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.44 E-value=0.5 Score=45.74 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCchhhHHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~~ 71 (457)
+|+.+++.+|+|+|||....
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~ 186 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQ 186 (415)
T ss_pred CCCEEEEECCCCCChhHHHH
Confidence 68899999999999996543
No 462
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.44 E-value=1.5 Score=47.53 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.1
Q ss_pred HHHHHHHHHHc-------C-----C---CEEEEcCCCchhhHHH
Q 012728 42 KQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCY 70 (457)
Q Consensus 42 ~Q~~~i~~~~~-------~-----~---~~lv~a~TGsGKT~~~ 70 (457)
+|.+++..+.+ | + .+++.+|||+|||..+
T Consensus 570 GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 570 GQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETA 613 (852)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHH
Confidence 67777766531 1 1 3789999999999765
No 463
>CHL00095 clpC Clp protease ATP binding subunit
Probab=91.40 E-value=1 Score=48.74 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.8
Q ss_pred CCEEEEcCCCchhhHHHH
Q 012728 54 RDCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~ 71 (457)
+++++.+|+|+|||.++.
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 589999999999997653
No 464
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.34 E-value=0.35 Score=41.57 Aligned_cols=35 Identities=29% Similarity=0.123 Sum_probs=24.0
Q ss_pred CEEEEcCCCchhhHHHHHhhh---cCCCeEEEEcchHH
Q 012728 55 DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~l~~l---~~~~~~lvl~P~~~ 89 (457)
=.++.+|++||||.-.+-.+. ..+.++++..|-..
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 357899999999975443322 24778888888544
No 465
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=91.33 E-value=0.87 Score=44.89 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=44.3
Q ss_pred hcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCchhhHHHHHhh--hc-----CCCeEEEEcchHHHHHHHHHHHH
Q 012728 33 HFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPA--LA-----KPGIVLVVSPLIALMENQVIGLK 99 (457)
Q Consensus 33 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~--l~-----~~~~~lvl~P~~~L~~q~~~~~~ 99 (457)
.|++...+|-|.+-+-.+- .+.+.++-+|+|+|||.+.+-.+ .+ ...+.++.+-|..=++....+++
T Consensus 11 ~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 11 YFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred ecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 4788899999988664432 35689999999999996644222 21 24567777766654444444443
No 466
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=91.29 E-value=1.3 Score=44.47 Aligned_cols=63 Identities=17% Similarity=0.288 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHc------C----CCEEEEcCCCchhhHHHH-Hh------hhcCCCeEEEEcchHHHHHHHHHHHHH
Q 012728 38 QFRDKQLDAIQAVLS------G----RDCFCLMPTGGGKSMCYQ-IP------ALAKPGIVLVVSPLIALMENQVIGLKE 100 (457)
Q Consensus 38 ~~~~~Q~~~i~~~~~------~----~~~lv~a~TGsGKT~~~~-l~------~l~~~~~~lvl~P~~~L~~q~~~~~~~ 100 (457)
.+-|||.-.+..+.- | +.+++..|-+-|||..+. +. .-..+..+.|++|+.+-+.+....++.
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar~ 140 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPARD 140 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHHH
Confidence 377999999988871 2 357889999999995332 21 113477899999999988887777665
No 467
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.22 E-value=1.8 Score=42.61 Aligned_cols=71 Identities=15% Similarity=0.130 Sum_probs=53.1
Q ss_pred CccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec-----cc-cccCCCCCc
Q 012728 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AF-GMGIDRKDV 327 (457)
Q Consensus 258 ~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldip~v 327 (457)
+.-.+|.|+|++.|.++....++. |+.+..+||+.+..++..-++ -...++|||+ ++ -.++|+.++
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceee
Confidence 334677889999988887666554 788999999999888766554 4567999996 22 236888888
Q ss_pred cEEEE
Q 012728 328 RLVCH 332 (457)
Q Consensus 328 ~~Vi~ 332 (457)
++++.
T Consensus 372 S~LV~ 376 (731)
T KOG0339|consen 372 SYLVL 376 (731)
T ss_pred eEEEE
Confidence 88774
No 468
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=91.20 E-value=1.2 Score=42.89 Aligned_cols=38 Identities=26% Similarity=0.349 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCchhhHHHH--HhhhcC--CCeEEEEcchHHH
Q 012728 53 GRDCFCLMPTGGGKSMCYQ--IPALAK--PGIVLVVSPLIAL 90 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~--l~~l~~--~~~~lvl~P~~~L 90 (457)
+..+++.+|||+|||...- +..+.. .++++.+--..++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh
Confidence 4678999999999995432 222222 3455555443443
No 469
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.10 E-value=0.99 Score=47.38 Aligned_cols=41 Identities=17% Similarity=0.217 Sum_probs=29.9
Q ss_pred cEEEEeccccccccCCCCHHHHHHHHHHHHhCC-CccEEEEeccCCh
Q 012728 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAP 205 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~-~~~~v~lSAT~~~ 205 (457)
=++|+|+.|.+.+.- ....+..+.+..| +...++.|-+-|+
T Consensus 131 l~LVlDDyHli~~~~-----l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDPA-----LHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCccc-----HHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 489999999997632 1256777788777 6778888877554
No 470
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=91.06 E-value=2.7 Score=40.18 Aligned_cols=41 Identities=10% Similarity=-0.001 Sum_probs=25.2
Q ss_pred cCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEecc
Q 012728 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (457)
Q Consensus 156 ~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT 202 (457)
.+..+++||||+|.+.... .+.+......-|+.-+++++++
T Consensus 108 ~~~~kvviI~~a~~~~~~a------~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA------ANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCHHH------HHHHHHHhcCCCCCceEEEEeC
Confidence 4557899999999985422 2455555555454444445554
No 471
>PRK07773 replicative DNA helicase; Validated
Probab=91.01 E-value=1.2 Score=48.67 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=53.4
Q ss_pred CCEEEEcCCCchhhHHHHHhh----hcCCCeEEEEcchHHHHHHHHHHHHH--cCCceeEecC-CCcHHHHHHHHHHhhc
Q 012728 54 RDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQTMQVKTKIYEDLDS 126 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~----l~~~~~~lvl~P~~~L~~q~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~ 126 (457)
.=+++.|++|+|||..++--+ ...+..+++++- -.-..|...++.. .++....+.. ................
T Consensus 218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSl-Ems~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~ 296 (886)
T PRK07773 218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSL-EMSKEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGE 296 (886)
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEec-CCCHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 447788899999996544222 223556766663 2223455555544 2222221211 1222222222111111
Q ss_pred CCCcccEEEE-CCCcccCchhHHHHHhhhhcCCccEEEEeccccccc
Q 012728 127 GKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (457)
Q Consensus 127 ~~~~~~i~~~-t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~ 172 (457)
. ....+.+. ++. +.-......+.+......+++||||=.+.+..
T Consensus 297 l-~~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~ 341 (886)
T PRK07773 297 I-SEAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTS 341 (886)
T ss_pred H-hcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCC
Confidence 0 11233332 221 11122333333333345689999999998853
No 472
>PRK14701 reverse gyrase; Provisional
Probab=90.97 E-value=0.79 Score=52.86 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=53.7
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC------CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~------g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~ 317 (457)
++.+++|.++|++-+.++++.|+.. ++.+..+||+++..++...++.+.+|+.+|||+|+.
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 4568999999999999999988863 456788999999999999999999999999999975
No 473
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.94 E-value=3.1 Score=42.32 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=23.7
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEecc
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT 202 (457)
+..+++||||||.+... ..+.+.......|..-.+++.+|
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~tt 155 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILATT 155 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEEC
Confidence 45789999999998542 23445555555453333334444
No 474
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=90.78 E-value=0.2 Score=52.12 Aligned_cols=54 Identities=20% Similarity=0.243 Sum_probs=43.1
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHHcCCceeEe
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~ 108 (457)
.++++.||||||||..+++|.+.. .+-+||.=|.-++........++.| ++..+
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~F 199 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLLF 199 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEEE
Confidence 589999999999999999998655 6788888899999887776666665 34433
No 475
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.78 E-value=0.27 Score=44.30 Aligned_cols=22 Identities=32% Similarity=0.199 Sum_probs=14.8
Q ss_pred EEEeccccccCCCCCccEEEEe
Q 012728 312 VVATVAFGMGIDRKDVRLVCHF 333 (457)
Q Consensus 312 LvaT~~~~~Gldip~v~~Vi~~ 333 (457)
-+.|-.-+.|..++.+.++..-
T Consensus 184 ~~~T~~e~qG~tf~~V~l~~~~ 205 (234)
T PF01443_consen 184 RVFTVHESQGLTFDNVTLVLLS 205 (234)
T ss_pred ceechHHcceEEeCCEEEEECC
Confidence 3666677788888776555543
No 476
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=90.75 E-value=3.2 Score=35.34 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=56.6
Q ss_pred EEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHH-HHHHHHHHHHHcCCceeEecCCCcHHHH-HHHHHHhhcCCCc
Q 012728 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQTMQVK-TKIYEDLDSGKPS 130 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 130 (457)
+.+.-..|=|||.+++--+ +-++.+|+++-=.+. --.--...++.++. ............. ......
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~-~~~~~~g~~f~~~~~~~~~~------- 77 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPN-VEIERFGKGFVWRMNEEEED------- 77 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT---EEEE--TT----GGGHHHH-------
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCe-EEEEEcCCcccccCCCcHHH-------
Confidence 4566678899998876433 445788888876655 22222233333321 1111111100000 000000
Q ss_pred ccEEEECCCcccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccCChh
Q 012728 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (457)
Q Consensus 131 ~~i~~~t~~~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~~~~ 206 (457)
.-....-+....+......+++||+||+-...++|. -+. ..+..++...|...-+.+|+--.+.
T Consensus 78 ---------~~~~~~~~~~a~~~i~~~~~dlvILDEi~~a~~~gl--l~~-~~v~~~l~~rp~~~evVlTGR~~~~ 141 (172)
T PF02572_consen 78 ---------RAAAREGLEEAKEAISSGEYDLVILDEINYAVDYGL--LSE-EEVLDLLENRPESLEVVLTGRNAPE 141 (172)
T ss_dssp ---------HHHHHHHHHHHHHHTT-TT-SEEEEETHHHHHHTTS--S-H-HHHHHHHHTS-TT-EEEEE-SS--H
T ss_pred ---------HHHHHHHHHHHHHHHhCCCCCEEEEcchHHHhHCCC--ccH-HHHHHHHHcCCCCeEEEEECCCCCH
Confidence 000011223334444456799999999988877773 222 4566666666655555566654444
No 477
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.72 E-value=1.6 Score=45.42 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=27.4
Q ss_pred hcCCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEeccC
Q 012728 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (457)
Q Consensus 155 ~~~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT~ 203 (457)
..+..+++||||+|.+... ..+.+...+...|..-++++.+|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~ 160 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTE 160 (614)
T ss_pred ccCCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCC
Confidence 3445789999999998542 235556666665554455565553
No 478
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=90.68 E-value=0.85 Score=43.14 Aligned_cols=48 Identities=23% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCCEEEEcCCCchhhHHHHHhh---hcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~~---l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
|.-+.+.+|+|+|||..++-.+ ...++.++++.+-..+-. +.++.+|.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~---~~a~~lGv 105 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDP---VYAKKLGV 105 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHH---HHHHHcCC
Confidence 3457789999999996554322 234778888887655543 23444543
No 479
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=90.64 E-value=3.2 Score=43.63 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=20.1
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcCCCeEEEE
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~~~~~lvl 84 (457)
+.+++.+|+|+|||...-..+-..+...+.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 4699999999999986543333333333333
No 480
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.61 E-value=0.55 Score=46.46 Aligned_cols=70 Identities=17% Similarity=0.272 Sum_probs=37.7
Q ss_pred cccCCCCC---hHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-cC-CCEEEEcCCCchhhHHHH-H-hhhcCCCeEEEEcc
Q 012728 14 TQKNKPLH---EKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SG-RDCFCLMPTGGGKSMCYQ-I-PALAKPGIVLVVSP 86 (457)
Q Consensus 14 ~~~~~~~~---l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~-~~-~~~lv~a~TGsGKT~~~~-l-~~l~~~~~~lvl~P 86 (457)
.=+|++++ |+.+..+.+...|-..-+-| +.+..+- ++ +.+++.+|+|+|||+.+- + .+|.....-||=-|
T Consensus 215 df~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp---~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGP 291 (744)
T KOG0741|consen 215 DFNFESMGIGGLDKEFSDIFRRAFASRVFPP---EVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGP 291 (744)
T ss_pred CCChhhcccccchHHHHHHHHHHHHhhcCCH---HHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcH
Confidence 34566665 55666666665543332222 1222211 11 679999999999998763 2 33443333344444
No 481
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=90.34 E-value=2.3 Score=39.25 Aligned_cols=50 Identities=16% Similarity=0.282 Sum_probs=33.9
Q ss_pred CccEEEEeccccccccCCCCHHHHHHHHHHHHhCC--------CccEEEEeccCChhHHHHHHH
Q 012728 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--------DVPILALTATAAPKVQKDVME 213 (457)
Q Consensus 158 ~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~v~lSAT~~~~~~~~~~~ 213 (457)
.-.++|+||+|.|- ...+..|.-++.+.| ++-.|++|.+-..+..+-..+
T Consensus 178 ~rslFIFDE~DKmp------~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~ 235 (344)
T KOG2170|consen 178 QRSLFIFDEVDKLP------PGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALE 235 (344)
T ss_pred CCceEEechhhhcC------HhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHH
Confidence 35699999999984 334566777776554 344788998877665543333
No 482
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=90.24 E-value=3.2 Score=37.24 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.0
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
+.+++.+|+|+|||..+
T Consensus 190 rgvllygppg~gktml~ 206 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLA 206 (408)
T ss_pred cceEEeCCCCCcHHHHH
Confidence 67999999999999754
No 483
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=90.19 E-value=0.3 Score=42.65 Aligned_cols=28 Identities=25% Similarity=0.218 Sum_probs=17.0
Q ss_pred EEEEcCCCchhhHHHHHhhhcCCCeEEE
Q 012728 56 CFCLMPTGGGKSMCYQIPALAKPGIVLV 83 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~l~~~~~~lv 83 (457)
.++.+|||+|||..++..+-..+..+|+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 5788999999997765544444444433
No 484
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=90.15 E-value=2.5 Score=41.60 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=29.6
Q ss_pred EEEEcCCCchhhHHHHHhh----hc--CCCeEEEEcchHH-HHHHHHHHHH
Q 012728 56 CFCLMPTGGGKSMCYQIPA----LA--KPGIVLVVSPLIA-LMENQVIGLK 99 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~----l~--~~~~~lvl~P~~~-L~~q~~~~~~ 99 (457)
.++.++.|||||.+....+ +. .+.+++++-|+.. |..-....+.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~ 54 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIE 54 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHH
Confidence 5788999999997655332 33 5778898989876 4433444443
No 485
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.13 E-value=1 Score=45.93 Aligned_cols=68 Identities=21% Similarity=0.255 Sum_probs=55.0
Q ss_pred EEEEeCCcccHHHHHHHHHhC-----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEec-----ccccc-CCCCCccE
Q 012728 261 AIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRL 329 (457)
Q Consensus 261 ~iIf~~s~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G-ldip~v~~ 329 (457)
+||.++|++-|.++++.+... ++.+..++|+.+...+...+ +.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999999888753 46688999999887766444 446 99999996 56666 88888888
Q ss_pred EEE
Q 012728 330 VCH 332 (457)
Q Consensus 330 Vi~ 332 (457)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 884
No 486
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.08 E-value=4.2 Score=42.76 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=38.2
Q ss_pred ccCCCCChHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHhhhcC
Q 012728 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK 77 (457)
Q Consensus 15 ~~~~~~~l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~ 77 (457)
..|.+.--.++....|.+.-.|- =+|.|.+-+-+-. -+-+|+++|+|+|||+.+-.-+-+.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fL-KNP~~Y~~lGAKi-PkGvLL~GPPGTGKTLLAKAiAGEA 368 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFL-KNPEQYQELGAKI-PKGVLLVGPPGTGKTLLAKAIAGEA 368 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHh-cCHHHHHHcCCcC-cCceEEECCCCCcHHHHHHHHhccc
Confidence 67888887778777777743333 1344433332211 2569999999999998774433333
No 487
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=90.00 E-value=4.3 Score=37.89 Aligned_cols=145 Identities=17% Similarity=0.136 Sum_probs=70.2
Q ss_pred HHHHHHHHHH-cCCCEEEEcCCCchhhHHHHHhhh-------------cCCCeEEEEcch--HHHHHHHHH-HHHHcCCc
Q 012728 42 KQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPAL-------------AKPGIVLVVSPL--IALMENQVI-GLKEKGIA 104 (457)
Q Consensus 42 ~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l-------------~~~~~~lvl~P~--~~L~~q~~~-~~~~~~~~ 104 (457)
.|-+.|+.+. +|-.+++.++.|.|||+..+...+ ...+.+++++-- ++-+..-.+ .+.++++.
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLs 156 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLS 156 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCC
Confidence 3555665544 455677889999999976552211 125667777632 221112122 22234443
Q ss_pred eeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCC-cccCchhHHHHHhhhhcCCccEEEEeccccccccCCCCH----H
Q 012728 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR----P 179 (457)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~-~i~t~~~~~~l~~~~~~~~l~~lViDEah~~~~~~~~~~----~ 179 (457)
..-+. .+... +++- .+++ -+..|.+...+.......+.+++|||=.=.+..-....+ .
T Consensus 157 Padvr---------n~dlt------d~~G--aa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~ 219 (402)
T COG3598 157 PADVR---------NMDLT------DVSG--AADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKE 219 (402)
T ss_pred hHhhh---------heecc------cccc--CCCccccccHHHHHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHH
Confidence 21110 00000 0000 1221 233455666666666666789999998766654221111 1
Q ss_pred HHHHHHHHHHhCCCccEEEEeccCC
Q 012728 180 SYRKLSSLRNYLPDVPILALTATAA 204 (457)
Q Consensus 180 ~~~~l~~~~~~~~~~~~v~lSAT~~ 204 (457)
.+....++.... .+.+++++-|--
T Consensus 220 fi~~~rkla~~l-~caIiy~hHtsk 243 (402)
T COG3598 220 FIKKTRKLARNL-ECAIIYIHHTSK 243 (402)
T ss_pred HHHHHHHHHHhc-CCeEEEEecccc
Confidence 112233333322 566888877743
No 488
>PRK09087 hypothetical protein; Validated
Probab=90.00 E-value=1.5 Score=39.31 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=14.1
Q ss_pred CCEEEEcCCCchhhHHH
Q 012728 54 RDCFCLMPTGGGKSMCY 70 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~ 70 (457)
..+++.+|+|+|||-..
T Consensus 45 ~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34899999999999654
No 489
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.98 E-value=0.27 Score=51.28 Aligned_cols=56 Identities=13% Similarity=0.030 Sum_probs=42.0
Q ss_pred CCEEEEcCCCchhhHHHHHhhhcC-CCeEEEEcchHHHHHHHHHHHHH-cCCceeEec
Q 012728 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (457)
Q Consensus 54 ~~~lv~a~TGsGKT~~~~l~~l~~-~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~ 109 (457)
.++++.||||||||..+++|.+.. ++.+||+=|.-++........++ .|..+..+.
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~fd 233 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRFE 233 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 579999999999999999887654 77889999999997665554433 454554433
No 490
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.94 E-value=3.7 Score=39.80 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=23.8
Q ss_pred CCccEEEEeccccccccCCCCHHHHHHHHHHHHhCCCccEEEEecc
Q 012728 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202 (457)
Q Consensus 157 ~~l~~lViDEah~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~lSAT 202 (457)
+...++||||+|.+.. ...+.+......-|...++++.+.
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEEC
Confidence 4478999999999743 223455555555554444444433
No 491
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=89.88 E-value=7.8 Score=39.62 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=84.7
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchhhHH--HHHhhhc---CCCeEEEEcchHHHHHHHHH
Q 012728 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALA---KPGIVLVVSPLIALMENQVI 96 (457)
Q Consensus 22 l~~~~~~~l~~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~--~~l~~l~---~~~~~lvl~P~~~L~~q~~~ 96 (457)
..+.+.+.|+..||...+..-=.+ . .+.+..+..-|-=-|||.. .++.++. .+-.+.+++.-+..++-..+
T Consensus 175 ~a~r~~~~lk~~Fdi~~~s~~~l~---~-FKQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~ 250 (668)
T PHA03372 175 LANRVLEYLLHVFDIEFLSESSLN---I-FKQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLK 250 (668)
T ss_pred HHHHHHHHHHHHcCCcccCHHHHH---H-hhccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHH
Confidence 456677888888888876653322 2 3566677778999999953 3333332 37788999998877665555
Q ss_pred HHH----HcCCceeEecCCCcHHHHHHHHHHhhcCCCcccEEEECCCcccCchhHHHH-HhhhhcCCccEEEEecccccc
Q 012728 97 GLK----EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRGLLNLVAIDEAHCIS 171 (457)
Q Consensus 97 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~i~t~~~~~~l-~~~~~~~~l~~lViDEah~~~ 171 (457)
+.. ++........ ..+-.|.+.-|..-.|..+..-. .+..+-...+++++||||-+.
T Consensus 251 EI~~~lrrwF~~~~vi~------------------~k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~ 312 (668)
T PHA03372 251 EVEFRCRRMFPRKHTIE------------------NKDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK 312 (668)
T ss_pred HHHHHHhhhcCccceee------------------ecCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC
Confidence 443 3211100000 01112333222211121121111 112223347899999999874
Q ss_pred ccCCCCHHHHHHHHHHHHhCC--CccEEEEeccCChhH
Q 012728 172 SWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKV 207 (457)
Q Consensus 172 ~~~~~~~~~~~~l~~~~~~~~--~~~~v~lSAT~~~~~ 207 (457)
. ..+..++..+. ++++|+.|.|-+...
T Consensus 313 ~---------~a~~tilgfm~q~~~KiIfISS~Nsg~~ 341 (668)
T PHA03372 313 K---------DAFNTILGFLAQNTTKIIFISSTNTTND 341 (668)
T ss_pred H---------HHHHHhhhhhcccCceEEEEeCCCCCCc
Confidence 3 33344444333 788999998855443
No 492
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=89.71 E-value=0.36 Score=44.67 Aligned_cols=39 Identities=15% Similarity=0.234 Sum_probs=26.3
Q ss_pred cCCCEEEEcCCCchhhHHH--HHhhhcCC-CeEEEEcchHHH
Q 012728 52 SGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (457)
Q Consensus 52 ~~~~~lv~a~TGsGKT~~~--~l~~l~~~-~~~lvl~P~~~L 90 (457)
.+.++++.|+||||||... ++..+... .+++++-...++
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 4678999999999999543 23333334 677777766665
No 493
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.64 E-value=3.9 Score=40.94 Aligned_cols=50 Identities=20% Similarity=0.039 Sum_probs=32.5
Q ss_pred CCCEEEEcCCCchhhHHHHHh---hhcCCCeEEEEcchHHHHHHHHHHHHHcCC
Q 012728 53 GRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (457)
Q Consensus 53 ~~~~lv~a~TGsGKT~~~~l~---~l~~~~~~lvl~P~~~L~~q~~~~~~~~~~ 103 (457)
|.-+++.+++|+|||...+-. ....+.+++++..- +-..|...++.+++.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~ 146 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGL 146 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCC
Confidence 456888999999999654422 22345678888764 334566666666553
No 494
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=89.62 E-value=5.1 Score=36.25 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=21.1
Q ss_pred EEEEcCCCchhhHHHHHhhh---------------cCCCeEEEEc
Q 012728 56 CFCLMPTGGGKSMCYQIPAL---------------AKPGIVLVVS 85 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~l~~l---------------~~~~~~lvl~ 85 (457)
.++.||.|+|||...+-.++ ..+++|+++.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 57899999999965542222 1356788888
No 495
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=89.59 E-value=1.9 Score=37.72 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=50.9
Q ss_pred CCccEEEEeCCcccHHHHHHHHHhC----CCceEeecCCCCHHHHHHHHHHHhcCCceEEEEecc-----cccc-CCCCC
Q 012728 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (457)
Q Consensus 257 ~~~~~iIf~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~~G-ldip~ 326 (457)
++.+++|.++++..+.+.+..+... ++.+..++|+.+..++.... .+..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 5668999999999888877766543 67788899988876554333 267789999952 2222 55666
Q ss_pred ccEEEEe
Q 012728 327 VRLVCHF 333 (457)
Q Consensus 327 v~~Vi~~ 333 (457)
++++|.-
T Consensus 144 l~~lIvD 150 (203)
T cd00268 144 VKYLVLD 150 (203)
T ss_pred CCEEEEe
Confidence 7776643
No 496
>PF05729 NACHT: NACHT domain
Probab=89.59 E-value=2 Score=35.91 Aligned_cols=43 Identities=16% Similarity=0.151 Sum_probs=23.9
Q ss_pred cEEEEeccccccccCCC--CHHHHHHHHHHHHh--CCCccEEEEecc
Q 012728 160 NLVAIDEAHCISSWGHD--FRPSYRKLSSLRNY--LPDVPILALTAT 202 (457)
Q Consensus 160 ~~lViDEah~~~~~~~~--~~~~~~~l~~~~~~--~~~~~~v~lSAT 202 (457)
-++|+|-+|.+...... -......+..+... .++.++++.|.+
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 36899999998763221 11222345555554 456666655544
No 497
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.42 E-value=0.58 Score=49.99 Aligned_cols=17 Identities=29% Similarity=0.327 Sum_probs=14.2
Q ss_pred CEEEEcCCCchhhHHHH
Q 012728 55 DCFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 55 ~~lv~a~TGsGKT~~~~ 71 (457)
.+++.+|||+|||..+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~ 502 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAK 502 (731)
T ss_pred eEEEECCCCccHHHHHH
Confidence 47899999999997653
No 498
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.29 E-value=0.9 Score=41.85 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHc-C-CCEEEEcCCCchhhHH
Q 012728 39 FRDKQLDAIQAVLS-G-RDCFCLMPTGGGKSMC 69 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~-~-~~~lv~a~TGsGKT~~ 69 (457)
+.+.|.+.+..++. . ..+++.+|||+|||..
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~ 96 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTT 96 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHH
Confidence 45778888876664 3 3588999999999954
No 499
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.29 E-value=0.84 Score=43.71 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHc-CCCEEEEcCCCchhhHHH--HHhhhcCCCeEEEEcchHHH
Q 012728 39 FRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIAL 90 (457)
Q Consensus 39 ~~~~Q~~~i~~~~~-~~~~lv~a~TGsGKT~~~--~l~~l~~~~~~lvl~P~~~L 90 (457)
+.+.+.+.+..+.+ +.++++.++||+|||... ++..+....+++++-.+.+|
T Consensus 163 ~~~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 163 FPPGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred CCHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 56778887776665 569999999999999532 22233345566666666665
No 500
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.11 E-value=13 Score=31.53 Aligned_cols=16 Identities=19% Similarity=0.137 Sum_probs=13.1
Q ss_pred EEEEcCCCchhhHHHH
Q 012728 56 CFCLMPTGGGKSMCYQ 71 (457)
Q Consensus 56 ~lv~a~TGsGKT~~~~ 71 (457)
+++.+++|+|||....
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 5788999999997644
Done!