BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012732
         (457 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B46|A Chain A, Crystal Structure Of Bna3p, A Putative Kynurenine
           Aminotransferase From Saccharomyces Cerevisiae
 pdb|3B46|B Chain B, Crystal Structure Of Bna3p, A Putative Kynurenine
           Aminotransferase From Saccharomyces Cerevisiae
          Length = 447

 Score = 28.9 bits (63), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 17  DGHLRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLAD 76
           D   R  TL   +  + T  +GS   S A +  ++GW+      L   +++Y +      
Sbjct: 250 DSFTRIATLSPEIGQL-TLTVGSAGXSFAATGWRIGWVLS----LNAELLSYAAKAHTRI 304

Query: 77  CYRSPDPINGKRNRSYIDAVRL 98
           C+ SP P+      S  DA+++
Sbjct: 305 CFASPSPLQEACANSINDALKI 326


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.141    0.455 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,168,884
Number of Sequences: 62578
Number of extensions: 525258
Number of successful extensions: 1068
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 1
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)