Query 012732
Match_columns 457
No_of_seqs 130 out of 1277
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:44:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012732.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012732hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 2.7E-57 5.8E-62 443.6 31.3 402 20-454 35-437 (437)
2 KOG1304 Amino acid transporter 100.0 2.8E-56 6E-61 428.4 29.7 390 20-451 44-449 (449)
3 PTZ00206 amino acid transporte 100.0 6.8E-55 1.5E-59 439.3 27.2 399 22-452 59-465 (467)
4 PF01490 Aa_trans: Transmembra 100.0 5.8E-53 1.3E-57 423.4 -2.9 403 21-448 1-408 (409)
5 PLN03074 auxin influx permease 100.0 4.5E-48 9.8E-53 387.8 29.9 387 22-456 45-456 (473)
6 KOG1305 Amino acid transporter 100.0 1.4E-44 3.1E-49 352.4 25.8 402 20-455 3-409 (411)
7 KOG4303 Vesicular inhibitory a 100.0 2E-42 4.4E-47 313.1 9.6 405 18-457 111-520 (524)
8 COG0814 SdaC Amino acid permea 100.0 5.5E-32 1.2E-36 267.9 30.4 394 20-446 6-410 (415)
9 PRK10483 tryptophan permease; 100.0 5.8E-26 1.3E-30 221.2 28.4 352 20-419 8-373 (414)
10 PRK09664 tryptophan permease T 99.9 1.3E-25 2.9E-30 218.4 26.9 354 20-419 6-374 (415)
11 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.1E-25 6.7E-30 218.4 29.7 352 21-421 1-367 (394)
12 PRK15132 tyrosine transporter 99.9 1.5E-24 3.2E-29 212.4 28.4 371 23-442 3-390 (403)
13 TIGR00837 araaP aromatic amino 99.9 2.9E-24 6.3E-29 213.2 22.5 346 29-420 3-360 (381)
14 PRK13629 threonine/serine tran 99.9 3E-21 6.6E-26 188.0 30.8 360 29-418 25-414 (443)
15 TIGR00814 stp serine transport 99.9 6.1E-20 1.3E-24 180.5 24.5 361 26-418 6-378 (397)
16 PRK10655 potE putrescine trans 99.7 2.3E-14 4.9E-19 145.0 30.4 237 20-283 5-244 (438)
17 PRK10249 phenylalanine transpo 99.7 2E-14 4.3E-19 145.9 28.6 240 20-282 20-263 (458)
18 TIGR01773 GABAperm gamma-amino 99.7 8.2E-14 1.8E-18 141.5 30.6 242 20-284 11-257 (452)
19 COG1113 AnsP Gamma-aminobutyra 99.7 4.7E-14 1E-18 135.9 24.5 363 17-419 8-389 (462)
20 PRK10644 arginine:agmatin anti 99.7 2.6E-13 5.6E-18 137.5 31.0 242 20-287 7-250 (445)
21 PRK11387 S-methylmethionine tr 99.6 1.4E-13 3.1E-18 140.3 28.9 246 20-287 13-265 (471)
22 PRK10435 cadB lysine/cadaverin 99.6 3.5E-13 7.6E-18 136.0 30.6 244 20-288 4-247 (435)
23 TIGR03810 arg_ornith_anti argi 99.6 2.8E-13 6.1E-18 138.0 29.0 283 21-323 1-294 (468)
24 PRK10746 putative transport pr 99.6 4.3E-13 9.4E-18 136.1 29.8 367 20-420 9-389 (461)
25 TIGR00905 2A0302 transporter, 99.6 4.2E-13 9.2E-18 136.9 29.8 251 20-287 6-257 (473)
26 PRK15049 L-asparagine permease 99.6 4.4E-13 9.5E-18 137.3 30.0 366 20-419 27-406 (499)
27 PRK11049 D-alanine/D-serine/gl 99.6 6.3E-13 1.4E-17 135.4 29.1 242 20-284 19-267 (469)
28 TIGR00913 2A0310 amino acid pe 99.6 1.2E-12 2.6E-17 134.0 31.0 242 20-282 1-251 (478)
29 PRK10238 aromatic amino acid t 99.6 1.2E-12 2.5E-17 132.9 29.1 236 20-279 11-251 (456)
30 PRK10580 proY putative proline 99.6 2.4E-12 5.3E-17 130.8 30.9 240 20-282 8-253 (457)
31 TIGR00909 2A0306 amino acid tr 99.6 5.8E-13 1.3E-17 134.5 25.9 284 20-324 2-295 (429)
32 PRK11021 putative transporter; 99.6 4.7E-12 1E-16 127.0 32.1 229 24-282 2-231 (410)
33 PRK10836 lysine transporter; P 99.6 3.1E-12 6.7E-17 131.1 30.1 244 20-286 14-263 (489)
34 KOG1287 Amino acid transporter 99.6 4.1E-13 8.8E-18 131.6 20.9 363 20-420 11-387 (479)
35 TIGR00906 2A0303 cationic amin 99.6 2.3E-12 4.9E-17 133.4 27.0 254 20-284 27-287 (557)
36 TIGR00908 2A0305 ethanolamine 99.5 8E-12 1.7E-16 126.6 28.4 235 20-281 6-244 (442)
37 TIGR00911 2A0308 L-type amino 99.5 6.3E-12 1.4E-16 129.3 26.8 246 20-284 41-291 (501)
38 TIGR00912 2A0309 spore germina 99.5 4.7E-12 1E-16 124.7 21.2 286 21-339 1-297 (359)
39 PRK11357 frlA putative fructos 99.5 2.3E-11 5.1E-16 123.3 26.6 240 20-282 7-249 (445)
40 PRK10197 gamma-aminobutyrate t 99.5 3E-11 6.5E-16 122.3 27.0 348 32-418 3-367 (446)
41 TIGR00930 2a30 K-Cl cotranspor 99.5 1.3E-10 2.9E-15 125.9 31.9 248 20-282 75-334 (953)
42 COG0833 LysP Amino acid transp 99.4 1.3E-10 2.8E-15 114.7 27.8 365 20-418 43-427 (541)
43 PF13520 AA_permease_2: Amino 99.4 1.4E-10 3E-15 117.1 25.6 360 23-422 1-378 (426)
44 COG0531 PotE Amino acid transp 99.3 1.1E-09 2.3E-14 111.9 28.1 247 20-289 11-262 (466)
45 TIGR03428 ureacarb_perm permea 99.3 9.5E-09 2.1E-13 105.1 32.9 249 20-281 12-266 (475)
46 TIGR03813 put_Glu_GABA_T putat 99.2 9.8E-09 2.1E-13 105.0 27.9 247 22-288 2-254 (474)
47 TIGR00907 2A0304 amino acid pe 99.2 1E-08 2.2E-13 105.2 27.8 242 20-277 11-266 (482)
48 PRK15238 inner membrane transp 99.2 3.4E-08 7.4E-13 101.5 30.1 248 20-281 6-264 (496)
49 TIGR00910 2A0307_GadC glutamat 99.1 2.2E-08 4.7E-13 103.0 26.1 239 20-281 3-247 (507)
50 KOG3832 Predicted amino acid t 99.1 2E-09 4.4E-14 92.1 11.4 222 24-254 13-302 (319)
51 PF03845 Spore_permease: Spore 99.0 1.2E-08 2.7E-13 98.7 18.3 283 22-339 1-293 (320)
52 PF00324 AA_permease: Amino ac 98.9 8.9E-09 1.9E-13 105.5 12.0 242 32-290 6-262 (478)
53 KOG1286 Amino acid transporter 98.9 1.8E-08 3.9E-13 102.8 13.3 303 20-336 29-349 (554)
54 PRK11375 allantoin permease; P 98.4 0.00037 8.1E-09 71.2 27.2 183 90-281 89-280 (484)
55 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.00022 4.8E-09 72.2 25.0 193 90-290 76-273 (442)
56 PRK12488 acetate permease; Pro 98.3 0.0021 4.6E-08 66.9 31.7 149 20-190 66-217 (549)
57 PF00474 SSF: Sodium:solute sy 98.3 9.9E-06 2.1E-10 81.2 13.8 149 20-189 5-156 (406)
58 COG3949 Uncharacterized membra 98.3 0.00038 8.2E-09 65.1 22.8 105 25-136 5-112 (349)
59 PRK09442 panF sodium/panthothe 98.3 0.0018 3.9E-08 66.4 29.9 150 20-189 40-194 (483)
60 TIGR00813 sss transporter, SSS 98.2 0.00042 9.1E-09 69.5 23.8 148 21-189 3-152 (407)
61 TIGR02119 panF sodium/pantothe 98.2 0.0029 6.2E-08 64.8 29.0 149 20-189 39-193 (471)
62 COG0591 PutP Na+/proline sympo 98.2 0.0028 6.1E-08 65.0 28.5 153 20-189 37-191 (493)
63 TIGR02711 symport_actP cation/ 98.2 0.0065 1.4E-07 63.3 31.3 148 20-189 66-216 (549)
64 TIGR02358 thia_cytX probable h 98.2 0.0027 5.9E-08 63.0 27.3 176 90-290 58-234 (386)
65 KOG1289 Amino acid transporter 98.1 0.00089 1.9E-08 67.0 22.6 63 224-289 251-313 (550)
66 TIGR00796 livcs branched-chain 98.0 0.0036 7.7E-08 61.5 23.3 260 30-323 2-285 (378)
67 PRK09395 actP acetate permease 98.0 0.031 6.7E-07 58.4 31.7 149 20-189 68-218 (551)
68 TIGR03648 Na_symport_lg probab 97.8 0.062 1.4E-06 56.1 32.4 148 20-188 31-180 (552)
69 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.028 6.1E-07 57.7 26.9 152 20-188 35-191 (487)
70 PRK15419 proline:sodium sympor 97.7 0.031 6.6E-07 57.7 26.2 153 20-189 39-196 (502)
71 PRK11017 codB cytosine permeas 97.7 0.029 6.2E-07 56.2 24.9 173 90-289 71-244 (404)
72 COG1914 MntH Mn2+ and Fe2+ tra 97.6 0.1 2.2E-06 51.9 27.6 105 21-136 15-123 (416)
73 COG1457 CodB Purine-cytosine p 97.4 0.095 2.1E-06 52.2 24.1 172 94-291 85-258 (442)
74 PRK00701 manganese transport p 97.2 0.29 6.4E-06 49.4 27.6 45 91-135 95-139 (439)
75 TIGR00835 agcS amino acid carr 97.2 0.088 1.9E-06 52.4 21.3 85 21-111 45-138 (425)
76 COG1953 FUI1 Cytosine/uracil/t 97.1 0.4 8.7E-06 48.1 26.9 199 90-300 103-318 (497)
77 PRK10484 putative transporter; 97.1 0.49 1.1E-05 49.1 30.8 155 20-189 37-197 (523)
78 COG4147 DhlC Predicted symport 96.9 0.52 1.1E-05 46.8 29.5 177 90-285 104-293 (529)
79 PF02133 Transp_cyt_pur: Perme 96.9 0.0067 1.4E-07 61.5 10.4 248 20-286 6-259 (440)
80 PF02554 CstA: Carbon starvati 96.7 0.091 2E-06 50.6 15.8 109 20-133 49-157 (376)
81 PF01566 Nramp: Natural resist 96.3 0.87 1.9E-05 44.8 20.4 81 91-185 43-125 (358)
82 PRK15015 carbon starvation pro 96.0 0.093 2E-06 54.1 12.2 107 20-131 80-186 (701)
83 COG0733 Na+-dependent transpor 95.9 2.2 4.7E-05 42.5 22.2 109 22-137 8-118 (439)
84 COG1966 CstA Carbon starvation 95.7 0.34 7.3E-06 49.0 14.5 106 20-130 49-154 (575)
85 PF05525 Branch_AA_trans: Bran 95.0 4.5 9.7E-05 40.5 24.4 48 24-71 4-54 (427)
86 PF01235 Na_Ala_symp: Sodium:a 94.9 4.3 9.3E-05 40.5 19.3 60 20-80 16-79 (416)
87 KOG2082 K+/Cl- cotransporter K 94.7 7 0.00015 41.3 20.7 106 24-133 116-222 (1075)
88 KOG2466 Uridine permease/thiam 94.4 4.5 9.8E-05 40.5 17.7 262 20-300 53-332 (572)
89 COG4145 PanF Na+/panthothenate 93.7 7.1 0.00015 37.9 21.1 151 20-188 38-191 (473)
90 PF05525 Branch_AA_trans: Bran 93.5 1.5 3.2E-05 43.9 13.0 139 32-191 205-346 (427)
91 TIGR00796 livcs branched-chain 93.5 1.1 2.5E-05 44.1 12.0 66 90-168 255-320 (378)
92 COG1114 BrnQ Branched-chain am 93.2 1.5 3.3E-05 43.0 11.9 132 32-184 207-343 (431)
93 PRK15433 branched-chain amino 92.9 11 0.00025 37.7 21.8 42 24-65 9-53 (439)
94 KOG2083 Na+/K+ symporter [Inor 92.2 0.29 6.3E-06 49.8 5.8 232 24-280 31-275 (643)
95 KOG1288 Amino acid transporter 90.8 0.3 6.5E-06 50.4 4.4 54 226-282 295-348 (945)
96 COG1115 AlsT Na+/alanine sympo 89.0 27 0.00058 35.0 22.6 62 20-82 60-125 (452)
97 PRK15433 branched-chain amino 88.9 5.3 0.00012 40.1 11.4 138 31-191 208-349 (439)
98 TIGR01197 nramp NRAMP (natural 87.2 33 0.00072 34.1 24.2 94 33-135 14-109 (390)
99 PF00209 SNF: Sodium:neurotran 84.7 53 0.0012 34.1 24.5 29 24-52 6-35 (523)
100 KOG2349 Na+:iodide/myo-inosito 84.1 13 0.00028 38.7 11.3 246 20-290 44-304 (585)
101 KOG1291 Mn2+ and Fe2+ transpor 83.2 46 0.001 33.5 14.2 46 91-136 90-135 (503)
102 COG0814 SdaC Amino acid permea 82.6 3.8 8.2E-05 41.2 7.0 153 259-419 221-376 (415)
103 PHA02764 hypothetical protein; 79.8 12 0.00026 35.5 8.5 99 15-120 6-107 (399)
104 COG1114 BrnQ Branched-chain am 59.5 1.9E+02 0.0042 28.8 21.4 74 24-108 6-82 (431)
105 TIGR00909 2A0306 amino acid tr 45.5 3.2E+02 0.007 27.2 12.1 47 91-137 265-311 (429)
106 KOG4812 Golgi-associated prote 43.9 75 0.0016 28.9 6.1 77 375-455 162-254 (262)
107 PRK12768 CysZ-like protein; Re 43.7 1.5E+02 0.0032 27.3 8.3 22 259-280 15-36 (240)
108 PF01235 Na_Ala_symp: Sodium:a 37.7 4.4E+02 0.0095 26.5 11.3 98 37-135 234-338 (416)
109 KOG1289 Amino acid transporter 35.1 3.5E+02 0.0076 28.1 10.0 46 91-136 326-371 (550)
110 COG1292 BetT Choline-glycine b 35.1 2.7E+02 0.0059 28.8 9.2 92 112-206 407-498 (537)
111 PF02028 BCCT: BCCT family tra 31.8 3.8E+02 0.0082 27.6 9.9 145 53-205 341-485 (485)
112 PRK09950 putative transporter; 30.8 3.9E+02 0.0084 27.7 9.8 71 115-185 407-479 (506)
113 TIGR00842 bcct choline/carniti 29.8 3.6E+02 0.0079 27.4 9.3 70 115-184 361-432 (453)
114 PLN00151 potassium transporter 28.6 8.3E+02 0.018 27.0 20.3 77 170-255 288-371 (852)
115 PF05884 ZYG-11_interact: Inte 26.4 2.6E+02 0.0057 26.4 6.9 45 376-422 117-162 (299)
116 PRK09928 choline transport pro 25.9 8.6E+02 0.019 26.2 13.0 89 115-204 414-503 (679)
117 PRK13183 psbN photosystem II r 25.7 94 0.002 20.2 2.7 29 262-290 5-33 (46)
118 PF00324 AA_permease: Amino ac 23.7 5E+02 0.011 26.4 9.4 47 91-137 275-321 (478)
119 PRK04949 putative sulfate tran 21.0 6.7E+02 0.014 23.2 10.0 30 259-288 24-53 (251)
120 CHL00020 psbN photosystem II p 20.8 1.1E+02 0.0023 19.7 2.3 27 264-290 4-30 (43)
121 PRK03356 L-carnitine/gamma-but 20.5 9.6E+02 0.021 24.8 12.6 69 116-184 411-480 (504)
122 PF05805 L6_membrane: L6 membr 20.4 2.7E+02 0.0058 24.7 5.5 30 390-419 44-73 (195)
123 CHL00182 tatC Sec-independent 20.2 6.9E+02 0.015 23.1 9.7 30 305-334 76-105 (249)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=443.63 Aligned_cols=402 Identities=38% Similarity=0.657 Sum_probs=357.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+|++|++++.+|.+|.++|.|+|++|+|+++.||..|+++++..++++.||..+|.+|.+.++.+.++|.++|+|+++++
T Consensus 35 ~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 35 SRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred CCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
||+++++++.+++.+.+++.|+.|++..+|.+..+.+..+.+.+ ....+.|+++++++.+|++++||++.++++
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l~~~ 188 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSLSYL 188 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchhHHH
Confidence 99988999999999999999999999999999999998776532 133568899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012732 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 259 (457)
Q Consensus 180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 259 (457)
|..+.+.++.+..+.+.++..+..+.+.+. .+.+...+.. ..+++++++.|+|++|..+|+|+++||+| +
T Consensus 189 S~~~avmS~~~a~~~~~~g~~~g~~~~~~~---~~~~~~~~~~---~~f~a~g~iaFaf~gH~v~peIq~tMk~p----~ 258 (437)
T KOG1303|consen 189 SLVGAVMSTLYAVILIVLGIADGVGFCAPS---GGYLDLGTIP---TVFTALGIIAFAYGGHAVLPEIQHTMKSP----P 258 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccCCcc---cCcccCCCCc---chhhhhhheeeeecCCeeeeehHhhcCCc----h
Confidence 999999999888877776665544332221 1121111111 11899999999999999999999999999 7
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHHHHHh
Q 012732 260 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFT 339 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 339 (457)
+|+|++.+++.+++++|+..++.||++|||+++|+++.|++ .|.|....+++++.+|++.+|+++..|+.+.+|+...
T Consensus 259 ~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~ 336 (437)
T KOG1303|consen 259 KFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIG 336 (437)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhc
Confidence 79999999999999999999999999999999999999996 5899999999999999999999999999999999987
Q ss_pred hhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHHHHhHhcc
Q 012732 340 RKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKI 419 (457)
Q Consensus 340 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~~~~~~~~ 419 (457)
.++++ +. .+....|...|+.+++.++++|+.+|.|+++++++||+...++.+++|+++|++.+|+
T Consensus 337 ~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~ 401 (437)
T KOG1303|consen 337 VKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKP 401 (437)
T ss_pred cCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 65332 00 0123689999999999999999999999999999999999999999999999999988
Q ss_pred CCcchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012732 420 GAWTRKWIVLRTF-SFICLLVTIIGLIGSIEGLISA 454 (457)
Q Consensus 420 ~~~~~~~~~~~~~-~~~g~~~~v~g~~~~i~~l~~~ 454 (457)
+++..+|+.++.+ .++++++++....++++.++.+
T Consensus 402 ~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 402 KRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 8888999999988 7999999999999999988764
No 2
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-56 Score=428.39 Aligned_cols=390 Identities=16% Similarity=0.263 Sum_probs=342.0
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH--
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR-- 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~-- 97 (457)
++..|..++..|++++++|+|+|++|+||+++||+.|.+..++++.++.||++.+++|.++...+.+....+|++.++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999999999999987765555555578888777
Q ss_pred --------HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhc
Q 012732 98 --------LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 169 (457)
Q Consensus 98 --------~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~ 169 (457)
+.+|+++|.+++..+.++++|.|++|+++.++.++++.+.. .....+.+.|+++..+..+++++
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHH
Confidence 44678899999999999999999999999999999998721 11136778889999999999999
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhc
Q 012732 170 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQD 249 (457)
Q Consensus 170 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 249 (457)
+||+|.++.+|.+++++++ +.++..+++..++.+. .++.....++.+....+|+.+|||.|+.++.|++|
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~----~g~~ii~~y~~~~~~~------~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn 265 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFIL----VGLAIIMYYLVQDLPP------TSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLEN 265 (449)
T ss_pred HHhhHHhhHHHHHHHHHHH----HHHHHHHHHHHhccCC------ccccccccchhhhHHHHHHHHHHhccceEEEehhh
Confidence 9999999999999999877 4555556666665442 22222333355777999999999999999999999
Q ss_pred cccCCCccchhhh---HHHHHHHHHHHHHHHhhhccccccccccccccccccccccCchhHHHHHHHHHHHHhhhccccc
Q 012732 250 TLKSPPPENKTMK---MASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIF 326 (457)
Q Consensus 250 ~m~~p~~~~~~~~---~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 326 (457)
+||+| |+++ ++++.++.+++++|+.+|++||++||+++++.++.|+| + +++...+++++.+.+..|||++
T Consensus 266 ~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~I~ls~pLQ 338 (449)
T KOG1304|consen 266 SMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIAIFLTYPLQ 338 (449)
T ss_pred cccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHHHHHcCchh
Confidence 99999 8999 99999999999999999999999999999999999999 5 8999999999999999999999
Q ss_pred ccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhh
Q 012732 327 SQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAI 406 (457)
Q Consensus 327 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ 406 (457)
++|..+.+|+.+.+|... .++++....+|..+++++..+|..+||++.+++++||++++.+.+
T Consensus 339 ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~l 401 (449)
T KOG1304|consen 339 FYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLAL 401 (449)
T ss_pred hhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHH
Confidence 999999999998876432 123478899999999999999999999999999999999999999
Q ss_pred hhhhHHHHhHhccC---CcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012732 407 YFPVEMYFVQKKIG---AWTRKWIVLRTFSFICLLVTIIGLIGSIEGL 451 (457)
Q Consensus 407 ilP~l~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~l 451 (457)
++|+++++..++++ +++++++.+..++++|++..+.|||+++.++
T Consensus 402 i~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 402 IFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999988764 3468888999999999999999999999864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=6.8e-55 Score=439.31 Aligned_cols=399 Identities=16% Similarity=0.191 Sum_probs=314.2
Q ss_pred cchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcC
Q 012732 22 TGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLG 101 (457)
Q Consensus 22 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 101 (457)
+++..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.++.++.+ ..+|+|++++++|
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~~G 132 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVLLG 132 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHHhC
Confidence 3556899999999999999999999999999999999999999999999999999876522 2499999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHH
Q 012732 102 KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 181 (457)
Q Consensus 102 k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~ 181 (457)
|++++++++.+.+.++|.|++|++..+|.++.+++....+ +..+.. ..++..+.++..++++|++++|++++++++|.
T Consensus 133 ~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~~~-~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~ 210 (467)
T PTZ00206 133 PWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLKQK-SGNRLLTSLMWLCFMLPLVIPRHIDSLRYVST 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhhhc-cCcEEeeeehhhhHhhhcccccchHHHHHHHH
Confidence 9999999999999999999999999999999988642110 000000 01222344556777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccc-cc-c-CC--CCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCc
Q 012732 182 IAAIMSFAYSFIGFGLGFAKVIENGRIKGS-IA-G-VP--TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 256 (457)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~-~-~~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 256 (457)
+++.++++..+.+++.++. ++.+...+ .+ + .+ +........+.++++++++|||.||.+++++++|||+|++
T Consensus 211 i~~~~i~~~vi~ivi~~~~---~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~ 287 (467)
T PTZ00206 211 IAVSFMVYLVIVIVVHSCM---NGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV 287 (467)
T ss_pred HHHHHHHHHHhhhhhhhhc---ccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch
Confidence 9998776443333222221 11111000 00 0 00 0001111236789999999999999999999999999865
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHHH
Q 012732 257 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVER 336 (457)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 336 (457)
+|+.+++..++.++.++|..+|++||+.||++++++++.|++. .++....+++++..+.++.+||++.+|+|+.+++
T Consensus 288 --~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~ 364 (467)
T PTZ00206 288 --GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYD 364 (467)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 8999999999999999999999999999999999999999931 3455677888989999999999999999999888
Q ss_pred HHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHHHHhH
Q 012732 337 WFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQ 416 (457)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~~~~~ 416 (457)
.+..+ . ++ .+.++|...+..++++++++|+++||++.+++++||++++.++|++|+++|++.
T Consensus 365 ~~~~~--~-----~~-----------~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~ 426 (467)
T PTZ00206 365 VIGWD--A-----RK-----------VAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYS 426 (467)
T ss_pred HhCCC--c-----cc-----------CchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 76321 1 10 011455566667777889999999999999999999999999999999999984
Q ss_pred h---ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012732 417 K---KIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLI 452 (457)
Q Consensus 417 ~---~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~l~ 452 (457)
. +++...+++..++.++++|++..++|||+++++.+
T Consensus 427 ~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 427 GGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred CCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 2 22223455677889999999999999999999875
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=5.8e-53 Score=423.41 Aligned_cols=403 Identities=26% Similarity=0.375 Sum_probs=327.8
Q ss_pred ccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHc
Q 012732 21 RTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNL 100 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 100 (457)
+|+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.|+.++.+ ++++..+|+|++++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987543 2333469999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHH
Q 012732 101 GKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLS 180 (457)
Q Consensus 101 Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s 180 (457)
||++++++++++.+.++|.|++|++..+|.+.++.+....+ ...++..+.++..++++|++++|+++++++.|
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999998764322 23566777788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccchh
Q 012732 181 VIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKT 260 (457)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~ 260 (457)
.++.++++..+.+.+. ........++.....++.....+.+++++++++++|||.+|+++|++++|||+|++. +|
T Consensus 152 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~-~~ 226 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVI----YIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKF-KK 226 (409)
T ss_pred hhhhhccceeeeeecc----eeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccc-cc
Confidence 9999887743111111 111111111111111111223456789999999999999999999999999998421 25
Q ss_pred hhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHHHHHhh
Q 012732 261 MKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERWFTR 340 (457)
Q Consensus 261 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 340 (457)
+++++..++.+++++|..+|+.||++||+++++|++.|++ ++++...++++++.++++.+||++.+|.++.+++.+.+
T Consensus 227 ~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~ 304 (409)
T PF01490_consen 227 MKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFK 304 (409)
T ss_pred cceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhheec
Confidence 5699999999999999999999999999999999999998 45578999999999999999999999999999998875
Q ss_pred hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHHHHhHhccC
Q 012732 341 KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIG 420 (457)
Q Consensus 341 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~~~~~~~~~ 420 (457)
+.+.++...++ ..+++++|..+|+.+++.++++|+.+||++++++++|++++..++|++|+++|++.++++
T Consensus 305 ~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~ 375 (409)
T PF01490_consen 305 RAASSRDSPKN---------TPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRK 375 (409)
T ss_pred ccccccccccc---------ccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccc
Confidence 30000000000 023347889999999999999999999999999999999999999999999999998877
Q ss_pred CcchhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 012732 421 AWTRKWI-----VLRTFSFICLLVTIIGLIGSI 448 (457)
Q Consensus 421 ~~~~~~~-----~~~~~~~~g~~~~v~g~~~~i 448 (457)
+++.++. ..+.++++|++..+.|++.++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 376 RNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 6443332 345677778888888888765
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.5e-48 Score=387.80 Aligned_cols=387 Identities=18% Similarity=0.208 Sum_probs=310.6
Q ss_pred cchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccC---CCCcCCcc----cccHHH
Q 012732 22 TGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRS---PDPINGKR----NRSYID 94 (457)
Q Consensus 22 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~---~~~~~~~~----~~~y~~ 94 (457)
+++..++.+++++..+|.|+|+||++|+++||++|++.++++++++.||++++.+++.+ .+++++.+ ..+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999986432 12222221 137899
Q ss_pred HHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcC
Q 012732 95 AVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFH 174 (457)
Q Consensus 95 l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~ 174 (457)
+++..+||+++.+..+...+++++.|+.|++..++.+.++.+ ..+.+.|++++.++.+|++++|+++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCHH
Confidence 999999999999999999999999999999987776665421 1456788889999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 175 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 175 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
+++++|.++..+++.....+++.+.. ++.. ++.+. +...+....+.+.++++|||++|..+|++++|||+|
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~----~~~~----~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P 262 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALS----HGQV----EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP 262 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh----hcCC----CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccCh
Confidence 99999999998766433333222221 1111 11111 112234567788899999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhccccccccccccc--cccccccccCchhHHHHHHHHHHHHhhhcccccccchHH
Q 012732 255 PPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG--NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFA 332 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 332 (457)
++++++...+...+..+|+.+|+.||+.|||++++ +.+.++| .+. ...++++++.++++.+||++..|+.+
T Consensus 263 ----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~ 335 (473)
T PLN03074 263 ----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACTPLYF 335 (473)
T ss_pred ----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 88999999999999999999999999999998764 4566676 333 46799999999999999999999999
Q ss_pred HHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHH
Q 012732 333 FVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEM 412 (457)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~ 412 (457)
..|+....+ + .|....|..+|+.++++++++|+.+|+|+.+++++||++++.+++++|+++
T Consensus 336 ~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~ 396 (473)
T PLN03074 336 VWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLA 396 (473)
T ss_pred HHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888875431 1 122367899999999999999999999999999999999999999999999
Q ss_pred HHhHhccC-------------Ccch--hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 012732 413 YFVQKKIG-------------AWTR--KWIVLRTFSFICLLV-TIIGLIGSIEGLISAKL 456 (457)
Q Consensus 413 ~~~~~~~~-------------~~~~--~~~~~~~~~~~g~~~-~v~g~~~~i~~l~~~~~ 456 (457)
|++.++++ ..++ +.+.+..+++++.++ .+.|+|+++++++++++
T Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 397 HMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred HHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 99865442 1122 236677777655555 58999999999999876
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-44 Score=352.42 Aligned_cols=402 Identities=19% Similarity=0.286 Sum_probs=326.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+++.|...+++|+.|+++|+|++++|++|++.|.+.|++++.+++.++.++.+++.++.++.+ ++ +|+++++..
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~----~~--ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG----ER--TYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC----CC--CHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999999999999976533 23 999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCcc-chHhHHHHHHHhhcCCCcCchhH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTK-HMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
+|+.++....+.......| |++|++..+|.++.+......+++.... ...+.. +++....++.|+++.|+++++++
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 9999977777777777777 7999999999999777654322221111 123333 57778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccc
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPEN 258 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~ 258 (457)
.|.++..+...+++++ +++............. .......+++.+.++|+++|||.||++..++++|||||++
T Consensus 154 tS~~s~~~~~~fv~~v----v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~-- 225 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLV----VYKYFQGPCALGRLSY--LVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSV-- 225 (411)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHhcccccCCccc--ccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchH--
Confidence 9999999988654433 3343332211111101 1111122368889999999999999999999999999976
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccCch----hHHHHHHHHHHHHhhhcccccccchHHHH
Q 012732 259 KTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPY----WLIDLANACIVLHLVGGYQIFSQPVFAFV 334 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~----~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 334 (457)
++++++...+...+.++|...|..||++||+++.+|++.+++...+. +....++..+.++++.++|+..+|+|..+
T Consensus 226 ~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l 305 (411)
T KOG1305|consen 226 KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNL 305 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 89999999999999999999999999999999999999999753222 24689999999999999999999999998
Q ss_pred HHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHHHH
Q 012732 335 ERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMYF 414 (457)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~~~ 414 (457)
++.+.++.|+.+ +....+|+.++..+++...+.|+++|+++++++++||+++..++|++|+++|+
T Consensus 306 ~~~~~~~~~~~~---------------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl 370 (411)
T KOG1305|consen 306 DELLFPYQPGLT---------------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYL 370 (411)
T ss_pred HHHhcccCCCCC---------------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhh
Confidence 887766544321 11125678889999999999999999999999999999999999999999999
Q ss_pred hHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012732 415 VQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAK 455 (457)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~l~~~~ 455 (457)
+.+|+ ..++....+...++++.+.+.|++.-+.++..+-
T Consensus 371 ~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 409 (411)
T KOG1305|consen 371 KASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLAKN 409 (411)
T ss_pred eeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 98876 4455666677888899999999999999888653
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=2e-42 Score=313.15 Aligned_cols=405 Identities=18% Similarity=0.208 Sum_probs=332.2
Q ss_pred CC-cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCc---ccccHH
Q 012732 18 GH-LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGK---RNRSYI 93 (457)
Q Consensus 18 ~~-~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~---~~~~y~ 93 (457)
|| +.+++.+++.+|+.|++-|.=+++||+|..+.||. ++..++.++.+++||+.+|++|..+.++ .|+ .+.+|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence 44 67899999999999999999999999999999987 8999999999999999999999987654 332 235999
Q ss_pred HHHHHHcCCc-chhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCC
Q 012732 94 DAVRLNLGKT-QTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPD 172 (457)
Q Consensus 94 ~l~~~~~Gk~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~ 172 (457)
++|..++++. |+..+.+.+.+.+..+|+.|++..+|.+..-++.. ..+.+-|+++..+.++|.+++++
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~ 257 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKD 257 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHH
Confidence 9999999875 56999999999999999999999999998876642 25667788899999999999988
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhcccc
Q 012732 173 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252 (457)
Q Consensus 173 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 252 (457)
++-.+.+|++..++-+..-.+++..++...-...-. .+. -.-+...+..++|+++|+|..|..+|.+...|+
T Consensus 258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~ws-----kv~---Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~ 329 (524)
T KOG4303|consen 258 LKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWS-----KVT---FSIDINTFPISVGMIVFSYTSQIFLPNLEGNMK 329 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccce-----eEE---EEEEcccCceEEEEEEEeeeceeeccccccccC
Confidence 877777777777666655545554444332111111 110 000111333789999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccCchhHHHHHHHHHHHHhhhcccccccchHH
Q 012732 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFA 332 (457)
Q Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 332 (457)
+| .++.-.+.++=+...++-..+|.+||++|++.++..+++|+| +.-...+++++.++.-+.|||+-++...+
T Consensus 330 ~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPfyAAve 402 (524)
T KOG4303|consen 330 NP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPFYAAVE 402 (524)
T ss_pred Ch----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchHHHHHH
Confidence 99 789999999999999999999999999999999999999998 33477899999999999999998888888
Q ss_pred HHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHH
Q 012732 333 FVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEM 412 (457)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~ 412 (457)
.+|+-+.+.+|+..+.. .|+ | ..+.+-+.+..|.++++.+.++|+++|.|..+++++|++.++.++|++|++|
T Consensus 403 lLe~nlF~g~p~t~Fps---cys-~---Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lF 475 (524)
T KOG4303|consen 403 LLENNLFLGYPQTPFPS---CYS-P---DGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALF 475 (524)
T ss_pred HHHHhhhcCCCCCCCce---eeC-C---CcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHH
Confidence 88888777655543210 011 1 0122345577899999999999999999999999999999999999999999
Q ss_pred HHhHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 012732 413 YFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIGSIEGLISAKLG 457 (457)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~~i~~l~~~~~~ 457 (457)
|++++++.....+...+..+++.|..+++.|.|.+...+++.+++
T Consensus 476 Hl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 476 HLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 999988776677788888999999999999999999999998874
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.5e-32 Score=267.94 Aligned_cols=394 Identities=17% Similarity=0.182 Sum_probs=290.1
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+.+.+..++++++.++++|+|+|++|++++..|+.++++++++++..++++++++.|+.++.+.. ..+|.+++++.
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~~~ 81 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVEDY 81 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHHHH
Confidence 45678889999999999999999999999999999999999999999999999999998764321 13999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
+||+++++.++.+.+.+++.+.+|.+..+|.+++.++...... ..++....+++..++.+++..++...++..
T Consensus 82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-------~~~r~~~~lif~~~~~~l~~~~~~~~lk~t 154 (415)
T COG0814 82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-------PLPRKLGSLIFALVLAFLSWLGTLAVLKIT 154 (415)
T ss_pred hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-------CcchHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 9999999999999999999999999999999999998632211 045566677888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012732 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 259 (457)
Q Consensus 180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 259 (457)
+.+....+.+..+ ++.+.....++. .....|..+ ...+.+...++|+++|||+||+++|++.+|||++++ +
T Consensus 155 s~l~~~~v~~~~~----l~~~~~~~~~~~--~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~--~ 225 (415)
T COG0814 155 SLLVFGKVIYLVL----LVVYLIPHWNPA--NLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSK--K 225 (415)
T ss_pred HHHHHHHHHHHHH----HHHHHhcccCHH--HHhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchh--H
Confidence 9888877664332 223332221111 111111111 233457789999999999999999999999998863 3
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccccccccccccccccC-----------chhHHHHHHHHHHHHhhhccccccc
Q 012732 260 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLLTGFGFYE-----------PYWLIDLANACIVLHLVGGYQIFSQ 328 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~-----------~~~~~~~~~~~~~i~~~~s~pl~~~ 328 (457)
+.+|+...+..+..++|...+..+|..+|++++++++++.+... .+......+++..+.+.+||--...
T Consensus 226 ~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~l 305 (415)
T COG0814 226 AVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYL 305 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchh
Confidence 49999999999999999999999999999999999999986310 1224455555566666666555555
Q ss_pred chHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhh
Q 012732 329 PVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYF 408 (457)
Q Consensus 329 p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~il 408 (457)
..++..++.+.+. +++ .+++ .+...............+...+...|..+.+.+.+|+.....+.+..
T Consensus 306 g~~~~~~~~~~~~--~~~-~~r~----------~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~ 372 (415)
T COG0814 306 GLFEGLADLFKKS--NSK-PGRK----------KTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK 372 (415)
T ss_pred hHHHhhhHHHHhc--cCc-ccch----------hhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 5566666655531 100 0010 01012223334455566778888888888899989998888999999
Q ss_pred hhHHHHhHhccCCcchhHHHHHHHHHHHHHHHHHHHHH
Q 012732 409 PVEMYFVQKKIGAWTRKWIVLRTFSFICLLVTIIGLIG 446 (457)
Q Consensus 409 P~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~ 446 (457)
|...+.+....++...++.....++++|++......+.
T Consensus 373 p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~ 410 (415)
T COG0814 373 PRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLA 410 (415)
T ss_pred HHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHH
Confidence 98888776554444332235556666666666555443
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=5.8e-26 Score=221.19 Aligned_cols=352 Identities=14% Similarity=0.130 Sum_probs=249.2
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+++++.+.+.+.+.+++||+|+|++|.+.++.|..++++++++++..+.||+.++.|...+.+. ..++.+++++.
T Consensus 8 ~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~~~ 82 (414)
T PRK10483 8 QTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITKDL 82 (414)
T ss_pred cCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999998765322 24999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcC--CCcCchh
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQI--PDFHNME 177 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~--~~l~~l~ 177 (457)
+||+++++..+...+..|+.+.+|+...|+.+.+.++....+ .+++.-.+++.++.-.+... |..+...
T Consensus 83 LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~---------i~~~~~~llF~~~~~~iv~~gt~~vd~~n 153 (414)
T PRK10483 83 LGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLN---------VPARAAGFGFALLVAFVVWLSTKAVSRMT 153 (414)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCC---------CcHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999999998752111 12222223333333333322 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCcc
Q 012732 178 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPE 257 (457)
Q Consensus 178 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~ 257 (457)
.+-..+.+.++ ++. +.....+-.. .+..+.+ .+....+...+.++|++++||+.|+++|++.+.+++..
T Consensus 154 ~~l~~~~i~~f----~~~---~~~l~~~i~~-~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~-- 222 (414)
T PRK10483 154 AIVLGAKVITF----FLT---FGSLLGHVQP-ATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDP-- 222 (414)
T ss_pred HHHHHHHHHHH----HHH---HHHHHhhcCH-HHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCH--
Confidence 33333332222 111 1111111110 0111111 11111233567999999999999999999999998653
Q ss_pred chhhhHHHHHHHHHHHHHHHh--hhcccccc---cccc--ccccc---ccccccc-CchhHHHHHHHHHHHHhhhccccc
Q 012732 258 NKTMKMASMISIFITTFFYLC--CGCFGYAA---FGND--TPGNL---LTGFGFY-EPYWLIDLANACIVLHLVGGYQIF 326 (457)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~Y~~--~g~~gy~~---fg~~--~~~~i---l~~~~~~-~~~~~~~~~~~~~~i~~~~s~pl~ 326 (457)
||.+|++..+..+..++|+. ..+.|-.. +.+. ..+|+ +..+.+. ++.+...+..++..+.+.+||--.
T Consensus 223 -~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 301 (414)
T PRK10483 223 -KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGV 301 (414)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999985 33333332 1100 11121 1222211 234666788899999999999988
Q ss_pred ccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhh
Q 012732 327 SQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLA 405 (457)
Q Consensus 327 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~~ 405 (457)
....+|.+.+.++.+ ++ . ..|.....+..++++++|.+.|+ |-..+++.|.. ...+.
T Consensus 302 ~LGL~d~l~D~~k~~--~~----~---------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~ 359 (414)
T PRK10483 302 TLGLFDYLADLFGFD--DS----A---------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWA 359 (414)
T ss_pred HHHHHHHHHHHhCCC--Cc----c---------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHH
Confidence 889999998887653 11 0 23444566788899999999998 99999999987 56888
Q ss_pred hhhhhHHHHhHhcc
Q 012732 406 IYFPVEMYFVQKKI 419 (457)
Q Consensus 406 ~ilP~l~~~~~~~~ 419 (457)
-++|+++.++.||+
T Consensus 360 ~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 360 AIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999876
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=1.3e-25 Score=218.40 Aligned_cols=354 Identities=14% Similarity=0.088 Sum_probs=245.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
++|.+...+++.+.+++||+|+|++|.+.++.|+.++++++++++..+.||+.++.|+..+.+. ..++.+++++.
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~ 80 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDL 80 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHH
Confidence 3455888899999999999999999999999999999999999999999999999998765422 24999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcC--CCcCchh
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQI--PDFHNME 177 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~--~~l~~l~ 177 (457)
+||+++++..+...+..|+.+.+|+...|+.+++.++..... ..+.+.-.+++.++.-.+... +..+...
T Consensus 81 LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~--------~i~~~~~~llF~~~~~~~v~~gt~~vd~~n 152 (415)
T PRK09664 81 IGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGY--------HANPRIVGICTAIFVASVLWISSLAASRIT 152 (415)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC--------CCcHHHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 999999999999999999999999999999999998641100 012222223333333333222 2233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCC-hhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCc
Q 012732 178 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 256 (457)
Q Consensus 178 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 256 (457)
.+-..+.+.++ ++. +.....+-.. ....+.+... ........+.++|++++||+.|+++|++.+.+++..
T Consensus 153 r~l~~~~ii~f----~~~---~~~l~~~i~~-~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~- 223 (415)
T PRK09664 153 SLFLGLKIISF----VIV---FGSFFFQVDY-SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK- 223 (415)
T ss_pred HHHHHHHHHHH----HHH---HHHHhhcccH-HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH-
Confidence 33222222222 111 1111111000 0111111001 001122466899999999999999999999988553
Q ss_pred cchhhhHHHHHHHHHHHHHHH--hhhcccccc---------ccccccccccccccccCchhHHHHHHHHHHHHhhhcccc
Q 012732 257 ENKTMKMASMISIFITTFFYL--CCGCFGYAA---------FGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLVGGYQI 325 (457)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~Y~--~~g~~gy~~---------fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl 325 (457)
|+.+|++..+..+..++|. ...+.|-.. .|++.++.+..........+...+..++..+.+.+||--
T Consensus 224 --~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlG 301 (415)
T PRK09664 224 --DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFG 301 (415)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999986 333333221 121222211111111134577888999999999999998
Q ss_pred cccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchh
Q 012732 326 FSQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPL 404 (457)
Q Consensus 326 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~ 404 (457)
.....+|.+.+.++.+ ++ + ..|.....+..+++++.|.+.|+ |-..+++.|.. ...+
T Consensus 302 v~LGL~D~l~D~~~~~--~~----~---------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il 359 (415)
T PRK09664 302 VTLGLFDYLADLFKID--NS----H---------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIW 359 (415)
T ss_pred HHHHHHHHHHHHhCCC--Cc----c---------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHH
Confidence 8889999998887653 11 0 22444566788899999999998 99999999997 5699
Q ss_pred hhhhhhHHHHhHhcc
Q 012732 405 AIYFPVEMYFVQKKI 419 (457)
Q Consensus 405 ~~ilP~l~~~~~~~~ 419 (457)
.-++|+++.++.||+
T Consensus 360 ~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 360 AVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999999876
No 11
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.95 E-value=3.1e-25 Score=218.39 Aligned_cols=352 Identities=18% Similarity=0.223 Sum_probs=250.3
Q ss_pred ccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHc
Q 012732 21 RTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNL 100 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 100 (457)
++.+.+++++.+.++++|+|+|+||.+.+..|..++++.+++++..++++++++.|...+.++ ..+|.+++++.+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~l 75 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYL 75 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHh
Confidence 356788999999999999999999999999999999999999999999999999998765332 249999999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHH
Q 012732 101 GKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLS 180 (457)
Q Consensus 101 Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s 180 (457)
||+++++..+...+..++.+.+|....++.++++++..... ..+++.-.+++.++...+.... -+...++.
T Consensus 76 G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~--------~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n 146 (394)
T PF03222_consen 76 GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT--------DLSPWLSSLLFTIIFGGIVYFG-TKAVDRIN 146 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 99999999999999999999999999999999998863211 1222322233333322222111 12222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCC-CChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012732 181 VIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPT-ANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 259 (457)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 259 (457)
..-+...+ .....++.+- ..+-+ .+...+ .+...++...+.++|++++||+.|+++|++.+.+++.+ |
T Consensus 147 ~~lv~~~i---~~~~~l~~~~-~p~~~----~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~---~ 215 (394)
T PF03222_consen 147 RVLVFGMI---ISFIILVVYL-IPHWN----PSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP---K 215 (394)
T ss_pred HHHHHHHH---HHHHHHHHHH-hhhcC----HHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH---H
Confidence 22222222 1111122221 21111 111111 11223345677999999999999999999999999664 8
Q ss_pred hhhHHHHHHHHHHHHHHHhh--hccccccc---------cccccc--cccccccccCchhHHHHHHHHHHHHhhhccccc
Q 012732 260 TMKMASMISIFITTFFYLCC--GCFGYAAF---------GNDTPG--NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIF 326 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~--g~~gy~~f---------g~~~~~--~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 326 (457)
|.+|++..+..+..++|+.. .++|-+.- +++..+ ..+.+.. .+++......++-.+.+.+||--.
T Consensus 216 k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 216 KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998854 33332211 111111 1122222 345678889999999999999888
Q ss_pred ccchHHHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhh
Q 012732 327 SQPVFAFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLA 405 (457)
Q Consensus 327 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~~ 405 (457)
....+|.+++.++.+ ++ +..|.....+..++++++|...|+ |...+++.| .....+.
T Consensus 294 ~lgl~d~l~d~~k~~--~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~ 351 (394)
T PF03222_consen 294 YLGLFDFLADLFKLK--NN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILL 351 (394)
T ss_pred HHHHHHHHHHHHcCC--cc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHH
Confidence 889999988877541 11 023455566677889999999997 899999999 8888999
Q ss_pred hhhhhHHHHhHhccCC
Q 012732 406 IYFPVEMYFVQKKIGA 421 (457)
Q Consensus 406 ~ilP~l~~~~~~~~~~ 421 (457)
.++|+++.++.|++++
T Consensus 352 ~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 352 GILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHcccC
Confidence 9999999999887654
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.94 E-value=1.5e-24 Score=212.42 Aligned_cols=371 Identities=15% Similarity=0.163 Sum_probs=253.8
Q ss_pred chHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCC
Q 012732 23 GTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGK 102 (457)
Q Consensus 23 ~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk 102 (457)
.+...+.+.+.+++||+|+|+||.+.+..|..++++++++++....|+++++.|+..+..+ ..++.+++++.+||
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~ 77 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGR 77 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhCh
Confidence 4778999999999999999999999999999999999999999999999999997654321 24899999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHH
Q 012732 103 TQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVI 182 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~ 182 (457)
+++++..+...+..|..+.+|....|+.+.+.++.+..++ .+.....+.+.++...... ...+...++.-+
T Consensus 78 ~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~--------i~~~~~~l~F~~~~~~iv~-~g~~~v~~~n~~ 148 (403)
T PRK15132 78 YGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS--------MSPTAGVLLFTLVAGGVVC-VGTSSVDLFNRF 148 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC--------CChHHHHHHHHHHHHHHHh-ccHHHHHHHHHH
Confidence 9999999999999999999999999999988886532211 1112222333333222222 122222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccchhhh
Q 012732 183 AAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMK 262 (457)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 262 (457)
-....+ +..+..+. ....+-+.. +....+ .+ . ...+.++|++++||+.|+++|++.+.+++.+ ||.+
T Consensus 149 L~~~~i---i~~~~~~~-~l~p~~~~~-~L~~~~-~~--~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~---~~~~ 215 (403)
T PRK15132 149 LFSAKI---IFLVVMLA-LMMPHIHKV-NLLTLP-LQ--Q--GLALSAIPVIFTSFGFHGSVPSIVSYMGGNI---RKLR 215 (403)
T ss_pred HHHHHH---HHHHHHHH-HHHHhcCHH-HHhcCC-cc--c--cHHHHHHHHHHHHhhCCcccHHHHHHhCcCH---HHHH
Confidence 221111 11111112 112211110 111111 01 0 1367999999999999999999999998654 8999
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccc-----cc-----cccccccc-cCchhHHHHHHHHHHHHhhhcccccccchH
Q 012732 263 MASMISIFITTFFYLCCGCFGYAAFGNDT-----PG-----NLLTGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVF 331 (457)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-----~~-----~il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 331 (457)
|++..+..+..++|+..=......-+.+. ++ ++++.+.+ .+.++...++.++..+.+.+||--.....+
T Consensus 216 k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~ 295 (403)
T PRK15132 216 WVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLF 295 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999843333333222221 11 22333221 134577888999999999999998888999
Q ss_pred HHHHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhh
Q 012732 332 AFVERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPV 410 (457)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~~~ilP~ 410 (457)
|.+.+.++++ + + ...|.....+..++++++|...|+ |....++.|.. ...+.+++|+
T Consensus 296 d~l~d~~~~~--~-----~--------------~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~ 353 (403)
T PRK15132 296 DYLADLFQRR--N-----T--------------VGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPS 353 (403)
T ss_pred HHHHHHHccC--c-----c--------------ccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9998887542 1 0 022455677888999999999998 89999999976 5799999999
Q ss_pred HHHHhHhccC-Ccch----hHHHHHHHHHHHHHHHHH
Q 012732 411 EMYFVQKKIG-AWTR----KWIVLRTFSFICLLVTII 442 (457)
Q Consensus 411 l~~~~~~~~~-~~~~----~~~~~~~~~~~g~~~~v~ 442 (457)
++.++.||++ +.++ .+...+...++|++..+.
T Consensus 354 ~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 354 LLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 9999988754 2222 233444555555554443
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=2.9e-24 Score=213.17 Aligned_cols=346 Identities=15% Similarity=0.110 Sum_probs=247.5
Q ss_pred HHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhh
Q 012732 29 VAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFC 108 (457)
Q Consensus 29 ~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~ 108 (457)
+..++++++|+|++++|..+++.|..++.+.+++.++.+.++..++.|...+.. + ..++.+++++.+||++++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-~----~~~~~~~~~~~~G~~~g~~~ 77 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-G----GASFNTIAKDLLGKTGNIIA 77 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C----CCCHHHHHHHHhCHHHHHHH
Confidence 455789999999999999999999999999999999999999999999875532 2 13899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHH
Q 012732 109 GLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSF 188 (457)
Q Consensus 109 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~ 188 (457)
.+...+..+..+.+|.+..++.+..+++..... . .+.....+++.+++.++. .+..+...+++.+.....+
T Consensus 78 ~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~----~----~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 78 GLSLLFVLYILTYAYISGGGSILSRLIGEYFGF----P----WSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKI 148 (381)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC----C----ccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999988742111 0 122223333333444443 4556777777777666555
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccchhhhHHHHHH
Q 012732 189 AYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMIS 268 (457)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~ 268 (457)
...++.++....+. +.. +..+.. .....+.+.+.+++...++|++|.+++++.+|+++++ ||.+|++..+
T Consensus 149 ~~l~~~ii~~~~~~---~~~--~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k~i~raii~g 218 (381)
T TIGR00837 149 IAFALVFSGLLPHV---KGD--LLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---KKVKKSILIG 218 (381)
T ss_pred HHHHHHHHHHHhhc---cHH--HHhcCc--cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---HHHHHHHHHH
Confidence 33222222222111 110 111110 0011234677899999999999999999999998663 9999999999
Q ss_pred HHHHHHHHHhhhccccccccccccc-------c---ccccccc-cCchhHHHHHHHHHHHHhhhcccccccchHHHHHHH
Q 012732 269 IFITTFFYLCCGCFGYAAFGNDTPG-------N---LLTGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERW 337 (457)
Q Consensus 269 ~~~~~~~Y~~~g~~gy~~fg~~~~~-------~---il~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 337 (457)
..++.++|+..........+.+.-. + ..+.... ..+.+...++..+..+.+.+|+.-.....+|.+.+.
T Consensus 219 ~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~ 298 (381)
T TIGR00837 219 SAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADL 298 (381)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997766655555433211 1 1111111 023457788899999999999998888888887777
Q ss_pred HhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhhHHHHhH
Q 012732 338 FTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQ 416 (457)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~~~ilP~l~~~~~ 416 (457)
++++ + ++ ..|..+..+..+++.++|.+.|+ +-..++..| +....+.+++|++++++.
T Consensus 299 ~~~~--~----~~---------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~ 356 (381)
T TIGR00837 299 FKFD--D----SK---------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKA 356 (381)
T ss_pred hCCC--c----cc---------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 6542 1 00 11345566777889999999998 449999999 778899999999999998
Q ss_pred hccC
Q 012732 417 KKIG 420 (457)
Q Consensus 417 ~~~~ 420 (457)
||++
T Consensus 357 r~~~ 360 (381)
T TIGR00837 357 RKKF 360 (381)
T ss_pred HhcC
Confidence 7753
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.90 E-value=3e-21 Score=188.00 Aligned_cols=360 Identities=11% Similarity=0.058 Sum_probs=242.8
Q ss_pred HHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhh
Q 012732 29 VAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFC 108 (457)
Q Consensus 29 ~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~ 108 (457)
...+.++.+|+|+|+||......|..+.++.+++++.+++++++.+.|...+.++ . ..++.+++++.+||+++.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~---~~~i~~v~~~~lG~~g~~i~ 100 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-P---SGNITETVEEHFGKTGGVVI 100 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-C---CCCHHHHHHHHcChhHHHHH
Confidence 4889999999999999999999999999999999999999999999997654322 1 24999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHH
Q 012732 109 GLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSF 188 (457)
Q Consensus 109 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~ 188 (457)
.++..+..+..+.+|.....+.+.+.+.+.... . ..++....+++.+++....... - +.+-.+..++..
T Consensus 101 ~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~----~---~~~r~l~slifv~~l~~iv~~G-~---~~v~kv~~~Lv~ 169 (443)
T PRK13629 101 TFLYFFAICPLLWIYGVTITNTFMTFWENQLGF----A---PLNRGFVALFLLLLMAFVIWFG-K---DLMVKVMSYLVW 169 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc----C---CccHHHHHHHHHHHHHHHHHhh-H---HHHHHHHHHHHH
Confidence 999999999999999999999988865532111 0 1223333333333333332222 1 223233333322
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccCC-----CCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC-------Cc
Q 012732 189 AYSFIGFGLGFAKVIENGRIKGSIAGVP-----TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP-------PP 256 (457)
Q Consensus 189 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-------~~ 256 (457)
..+...+.++++-...-+.. +....+ +..........+.++|++++||+.|+++|++...+|+. +.
T Consensus 170 ~~i~~l~~l~~~LiP~w~~~--~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~ 247 (443)
T PRK13629 170 PFIASLVLISLSLIPYWNSA--VIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDF 247 (443)
T ss_pred HHHHHHHHHHHHHHHHcCHH--HHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccch
Confidence 22222222333322221111 111111 00010112346789999999999999999999994332 21
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccccccccccc-----cccc--ccc----cccc-Cc-----hhHHHHHHHHHHHHh
Q 012732 257 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT-----PGNL--LTG----FGFY-EP-----YWLIDLANACIVLHL 319 (457)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-----~~~i--l~~----~~~~-~~-----~~~~~~~~~~~~i~~ 319 (457)
.+||.+|++..+..+..++|+..-+......+++. ++|. +.. ++.. .. .+...+..++..+.+
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI 327 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAI 327 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHH
Confidence 14899999999999999999866655555554432 1222 222 2210 01 346777778888899
Q ss_pred hhcccccccchHHHHHHHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhh
Q 012732 320 VGGYQIFSQPVFAFVERWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGA 398 (457)
Q Consensus 320 ~~s~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga 398 (457)
.+||--.....+|.++....+ ..+.. +++ .+.+..+......+.+.++.++..-|++-.+++-.|+
T Consensus 328 ~TSFlGv~LGl~E~l~gl~~~~~~~~~---~~~----------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~g 394 (443)
T PRK13629 328 FKSFFGHYLGTLEGLNGLILKFGYKGD---KTK----------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGA 394 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc---ccc----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhh
Confidence 999998888999999888743 11110 010 1223556677778888999999999999999997777
Q ss_pred hhcchhhhhhhhHHHHhHhc
Q 012732 399 LNFWPLAIYFPVEMYFVQKK 418 (457)
Q Consensus 399 ~~~~~~~~ilP~l~~~~~~~ 418 (457)
-....+.|++|....+|...
T Consensus 395 Piia~il~l~P~y~i~kvp~ 414 (443)
T PRK13629 395 PIIASLLCLLPMYAIRKAPS 414 (443)
T ss_pred HHHHHHHHHHHHHHHHccHH
Confidence 77789999999999888744
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.86 E-value=6.1e-20 Score=180.51 Aligned_cols=361 Identities=12% Similarity=0.040 Sum_probs=244.9
Q ss_pred HHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcch
Q 012732 26 RSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQT 105 (457)
Q Consensus 26 ~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~ 105 (457)
....+.+.++++|+|+|.+|...++.||.+.++..++...+++++.+++.|...... ..+ .++.|++++.+||+++
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~p~---~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-NPC---EDITEVVEEHFGKNWG 81 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCC---CCHHHHHHHHcCHHHH
Confidence 456788999999999999999999999999999999999999999999998743321 111 3999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHH
Q 012732 106 WFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAI 185 (457)
Q Consensus 106 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~ 185 (457)
.+..+...+..+..+.+|....++.+.+++...... + .+.++...+..+++.........+.+.+++.+-..
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~-------~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-A-------PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-------CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 999999999999999999999999999988653211 0 11122222222222122223344444554444443
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhh----ccccCCCccchhh
Q 012732 186 MSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQ----DTLKSPPPENKTM 261 (457)
Q Consensus 186 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~----~~m~~p~~~~~~~ 261 (457)
..+. ....+.++...+-+.. +....|. ....+.+...++++.++||.+|+++|+.. +|.++|+..+||.
T Consensus 154 ~~ii---~l~~l~~~lip~~~~~--~L~~~p~--~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~ 226 (397)
T TIGR00814 154 PLVL---ILVLLSLYLIPHWNGA--NLTTFPS--FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKC 226 (397)
T ss_pred HHHH---HHHHHHHHHHHHcCHH--HHhcCCc--ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHH
Confidence 3221 2222222222211111 1111111 11234578899999999999999999998 3344343335899
Q ss_pred hHHHHHHHHHHHHHHHhhhccccccccccc-----cccc--cccccc-cCchhHHHHHHHHHHHHhhhcccccccchHHH
Q 012732 262 KMASMISIFITTFFYLCCGCFGYAAFGNDT-----PGNL--LTGFGF-YEPYWLIDLANACIVLHLVGGYQIFSQPVFAF 333 (457)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-----~~~i--l~~~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~ 333 (457)
+|++..+..+..++|+..-.......+++. ++|+ +..+.+ .+.++...+...+..+.+.+||--+...++|.
T Consensus 227 ~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~ 306 (397)
T TIGR00814 227 LRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREG 306 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999876666666665442 1221 221111 12346667788888889999999999999999
Q ss_pred HHHHHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhhhhhhhHHH
Q 012732 334 VERWFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLAIYFPVEMY 413 (457)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~~ilP~l~~ 413 (457)
+++.+.+..+. .+++ .+++..+......+.+.++.++..-|++-.+++-.|+-....+.|++|+...
T Consensus 307 l~~l~~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~ 373 (397)
T TIGR00814 307 LNGIVLNSLKM---KGKK----------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAI 373 (397)
T ss_pred HHHHHHHHhcc---cccc----------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 99887432111 0010 1223455666777888899999999999888887777777799999999998
Q ss_pred HhHhc
Q 012732 414 FVQKK 418 (457)
Q Consensus 414 ~~~~~ 418 (457)
+|...
T Consensus 374 ~~v~~ 378 (397)
T TIGR00814 374 YKVPA 378 (397)
T ss_pred HccHH
Confidence 88644
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.70 E-value=2.3e-14 Score=145.01 Aligned_cols=237 Identities=12% Similarity=0.070 Sum_probs=150.4
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+|+.+.++.+...+++++|+|++.+|..+++.|. .+++..++.+++.......+.|...+ .+++| .....+++.
T Consensus 5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~G----G~y~y~~~~ 78 (438)
T PRK10655 5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMF-SRKSG----GMGGYAEYA 78 (438)
T ss_pred cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhh-CCCCC----chHHHHHHH
Confidence 5689999999999999999999999998888887 57888888999988888888886544 34444 334567899
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
+||+.+++..+...+.......++.....+++..+++. + .+ .....+..++++.+...-|....+..
T Consensus 79 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~---~---------~~-~~~~~~~~~~~l~~~~~ln~~g~~~~ 145 (438)
T PRK10655 79 FGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA---T---------LS-PVQICLATIGVLWLCTVANFGGARIT 145 (438)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c---------cc-hHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999887766655555544555555554431 0 00 11111111111111112233334444
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCc
Q 012732 180 SVIA---AIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 256 (457)
Q Consensus 180 s~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 256 (457)
+.+. ....+...+++++..... .+ +.+ ..++.. ........++..++....|+|.|.+....+.+|+|||+
T Consensus 146 ~~i~~i~~~~~l~~l~~~~i~~~~~-~~--~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~- 219 (438)
T PRK10655 146 GQISSVTVWGVIIPVVGLSIIGWFW-FS--PSL-YVAAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPE- 219 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hC--ccc-ccCCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc-
Confidence 3333 333222222222211211 11 111 001111 11111123566788899999999999999999999996
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhccc
Q 012732 257 ENKTMKMASMISIFITTFFYLCCGCFG 283 (457)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~Y~~~g~~g 283 (457)
|+.+|++..+..++.++|+......
T Consensus 220 --r~iPrAi~~~~~~~~~~Y~l~~~~~ 244 (438)
T PRK10655 220 --RNVPIAVLGGTLGAAVIYIVSTNVI 244 (438)
T ss_pred --ccccHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998765443
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.69 E-value=2e-14 Score=145.92 Aligned_cols=240 Identities=14% Similarity=0.076 Sum_probs=152.6
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHH-HHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWS-TAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++.++|+|++..|-. .+++|. ..++..++.+++....+..+.|...+ .|++| ...+.+++
T Consensus 20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~-~P~~G----g~~~y~~~ 93 (458)
T PRK10249 20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVE-EPVSG----SFAHFAYK 93 (458)
T ss_pred hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHH
Confidence 7889999999999999999999998765 456676 47888889999999999999997655 34444 55667899
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+|+..++++.+...+.......+.....+.+++.+.+. .....+..+...+...+. .+..|..+.
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~lN-~~gv~~~~~ 159 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------VPTWIWAAAFFIIINAVN-LVNVRLYGE 159 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------CcHHHHHHHHHHHHHHHH-Hhcchhhhh
Confidence 999999999999888777666666666556555543321 111111122222222222 233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccccc-CCCCC-hhHHHHHHHHHHHHHHhhccCcceehhhhccccCCC
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGR-IKGSIAG-VPTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 255 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 255 (457)
+.....+..+..+++.++..+.......+ ......+ .++.. ....+.+++.++....|+|.|.+.+....+|+|||+
T Consensus 160 i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~ 239 (458)
T PRK10249 160 TEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPE 239 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHh
Confidence 43333322222212222222222121111 1111111 11000 012344567899999999999999999999999996
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhcc
Q 012732 256 PENKTMKMASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (457)
|+.+|++..+.....++|......
T Consensus 240 ---k~iPrai~~~~~~~~~~y~~~~~~ 263 (458)
T PRK10249 240 ---KSIPKAVNQVVYRILLFYIGSLVV 263 (458)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999864443
No 18
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.67 E-value=8.2e-14 Score=141.50 Aligned_cols=242 Identities=14% Similarity=0.068 Sum_probs=156.7
Q ss_pred cccchHHHHHHHHHhhhhccccchhH-HHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLA-WSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..+++++|+|++..| .+.+++|. .+++..++.++.....+..+.|.... .|.+| ...+.+++
T Consensus 11 ~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~-~P~~G----g~~~~~~~ 84 (452)
T TIGR01773 11 PNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVA-NPDTG----SFSTYADD 84 (452)
T ss_pred hCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHH
Confidence 78899999999999999999999999 66778886 47888888999999999999987654 23333 55677899
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+||+.++++.+...+.....+.+.....+..+..+.+. .+...+.++...+...+ -.+..+..+.
T Consensus 85 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~~~~~~~~~~~~-n~~gv~~~~~ 150 (452)
T TIGR01773 85 AIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------IPLWLFSLILTIVLTLT-NLYSVKSYGE 150 (452)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHH-HHHhcchhhH
Confidence 999999999999998888777777777777766655321 11111111111111111 2233444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccccCCCCCh--hHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKG--SIAGVPTANL--ADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
+.....+..+...++.++..+.......+... ...+..+... ...+.+++.++....|+|.|.+......+|+|||
T Consensus 151 ~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P 230 (452)
T TIGR01773 151 FEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh
Confidence 44443333322221222222221111111100 0111110000 1223467789999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhcccc
Q 012732 255 PPENKTMKMASMISIFITTFFYLCCGCFGY 284 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 284 (457)
+ |+.+|++..+.....++|+.......
T Consensus 231 ~---r~iPrAi~~~~~~~~~~y~l~~~~~~ 257 (452)
T TIGR01773 231 I---KSITRATNSVIWRIIVFYLGSIFIVV 257 (452)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 6 89999998888888888887544333
No 19
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.65 E-value=4.7e-14 Score=135.89 Aligned_cols=363 Identities=15% Similarity=0.147 Sum_probs=233.0
Q ss_pred CCC-cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHH
Q 012732 17 DGH-LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYID 94 (457)
Q Consensus 17 ~~~-~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 94 (457)
+++ +|..+.++--+.-++..||+| .++--.+.+.+|.-. ++.-+++|++...-++.+.|...+ ++.. .|+.+
T Consensus 8 ~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~-~p~~----gSF~~ 81 (462)
T COG1113 8 EQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVA-NPVS----GSFSD 81 (462)
T ss_pred chhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHh-CCCC----CcHHH
Confidence 344 788999999999999999999 566888899999763 777888999999999999997655 3333 39999
Q ss_pred HHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHH--HHHhhcCCC
Q 012732 95 AVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAV--QVVMSQIPD 172 (457)
Q Consensus 95 l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v--~~~l~~~~~ 172 (457)
.+++.+|++.++++++..+.....++++-+...+.+++.++++. ..+.+.+....+ ..=+...|.
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------------P~Wv~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------------PQWVFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------cHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998752 111222222222 223335677
Q ss_pred cCchhHH-HHHHHHHHHHHHHHHHHHHHH-HHHHhcccccccccCCCCCh-----hHHHHHHHHHHHHHHhhccCcceeh
Q 012732 173 FHNMEWL-SVIAAIMSFAYSFIGFGLGFA-KVIENGRIKGSIAGVPTANL-----ADKLWLAFQALGDIAFAYPYSIILL 245 (457)
Q Consensus 173 l~~l~~~-s~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~faf~~~~~i~ 245 (457)
+.++.+. +.+-+..++.+ ++++..+. ..+.+++ ...++++.+. ...+.+++.++.+.+|||++.+.+-
T Consensus 149 FGE~EfWfAlIKV~aIi~~--Iv~G~~ll~~g~~~~~---~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvG 223 (462)
T COG1113 149 FGELEFWFALIKVAAIIAF--IVVGIVLLFGGFGGGG---GAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVG 223 (462)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccCCCC---CCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHH
Confidence 7777754 44444433322 22222211 1122221 1233333221 2345688899999999999999999
Q ss_pred hhhccccCCCccchhhhHHHHHHHHHHHHHHH-----hhhccccccccccccccccccccccCchhHHHHHHHHHHHHhh
Q 012732 246 EIQDTLKSPPPENKTMKMASMISIFITTFFYL-----CCGCFGYAAFGNDTPGNLLTGFGFYEPYWLIDLANACIVLHLV 320 (457)
Q Consensus 246 ~i~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~-----~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~ 320 (457)
-...|-|||+ |..+|+++-...-..++|+ ++.+.-+-.++++.+. ...-+....-++...+.|+.+.....
T Consensus 224 itA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP-FV~~f~~iGi~~Aa~i~N~VVLtAa~ 299 (462)
T COG1113 224 ITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP-FVTVFSLIGIPFAAGIMNFVVLTAAL 299 (462)
T ss_pred HHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc-HHHHHHHcCCcccccceeEEEeechh
Confidence 9999999997 8889998888777777776 4555555555554333 22222211123455566666655555
Q ss_pred hcccccccchHHHHHHHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC--hHHHHHHhh
Q 012732 321 GGYQIFSQPVFAFVERWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY--FNQVLGVLG 397 (457)
Q Consensus 321 ~s~pl~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~~~G 397 (457)
++.---.+..-.++..+-.+ +-|+. ..+....++| ..-+........+..++.+..|. |..+.+..+
T Consensus 300 S~~NSglystsRmL~~la~~g~APk~--~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~ 369 (462)
T COG1113 300 SALNSGLYSTSRMLYSLAKQGDAPKA--FAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSG 369 (462)
T ss_pred hcccccccccchHHHHHhhcCcccHh--HhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 55433233322333222111 11111 0010111234 45567777778888899999994 555665555
Q ss_pred hhhcchhhhhhhhHHHHhHhcc
Q 012732 398 ALNFWPLAIYFPVEMYFVQKKI 419 (457)
Q Consensus 398 a~~~~~~~~ilP~l~~~~~~~~ 419 (457)
... +....+=.+.|++.||.
T Consensus 370 ~~~--l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 370 LGL--LFVWLMILLSQLKLRKA 389 (462)
T ss_pred HHH--HHHHHHHHHHHHHHHhc
Confidence 443 44445556678887773
No 20
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.65 E-value=2.6e-13 Score=137.51 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=147.4
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+|+.+.++++...++.++|+|++.+|...++.|.. .+...++.++........+.|.... .|++| .....+++.
T Consensus 7 ~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~-~P~aG----G~y~~~~~~ 80 (445)
T PRK10644 7 AHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSL-DPSPG----GSYAYARRC 80 (445)
T ss_pred CCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----ChhHHHHHH
Confidence 57899999999999999999999999988877643 4566666777777777777886554 34444 223348899
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhh--cCCCcCchh
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS--QIPDFHNME 177 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~--~~~~l~~l~ 177 (457)
+||..++++.+...+.......+......++...+.+.. . +.....++..++++.+. -.+..|...
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-------K-----DPLVLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------C-----CcHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 999999999888777665555555545555555544321 0 00111111111111121 122334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCcc
Q 012732 178 WLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPE 257 (457)
Q Consensus 178 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~ 257 (457)
.+..+.....+..+++.....+.. ...+.. ..+.+ .........+..++....|+|.|.+......+|+|||+
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~-- 221 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFW-FRGETY---MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK-- 221 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCchhc---cCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcc--
Confidence 444443333222111111111111 111000 01111 11112233556788899999999999999999999996
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012732 258 NKTMKMASMISIFITTFFYLCCGCFGYAAF 287 (457)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~f 287 (457)
|+.+|++..+..++.++|......-....
T Consensus 222 -r~iPrai~~s~~i~~v~Y~l~~~~~~~~~ 250 (445)
T PRK10644 222 -RNVPIATIGGVLIAAVCYVLSSTAIMGMI 250 (445)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 89999999999999999997776543333
No 21
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.65 E-value=1.4e-13 Score=140.31 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=148.6
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHH-HHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWS-TAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++.++|+|++..|-. .+.+|-...++..++.+++.......+.|.... .|++| .+...+++
T Consensus 13 ~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~aG----G~y~y~~~ 87 (471)
T PRK11387 13 KRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPETG----AFHVYAAR 87 (471)
T ss_pred hhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHHHHHH
Confidence 7889999999999999999999988765 467776445777888888888888888886654 34444 45567889
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+|+..++.+.+..++.....+.+.....+..+..+.+. .....+.+++.++...+. .+..|....
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~~~~in-~~gvk~~~~ 153 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-------------VPVWPWCLLFCALIFGLN-VVSTRFFAE 153 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------CcHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 999999999999888776665554444444433322110 011111222222222222 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cccccccCCCCCh-hHHHHHHHHHHHHHHhhccCcceehhhhcccc
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGR-----IKGSIAGVPTANL-ADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 252 (457)
++.......+..++..++..+........ .....+...+... .....+++.++....|+|.|.+.+....+|+|
T Consensus 154 ~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~k 233 (471)
T PRK11387 154 GEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETE 233 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 33222222221111112222221111100 0000011110000 11234567788889999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012732 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAF 287 (457)
Q Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~f 287 (457)
||+ |+++|++..+...+.++|+..........
T Consensus 234 nP~---r~iPrAi~~~~~~~~~~y~~~~~~~~~~~ 265 (471)
T PRK11387 234 NPA---KVIPVAIRTTIARLVIFFVGTVLVLAALI 265 (471)
T ss_pred Chh---hHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 996 89999999999999999987765433333
No 22
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.64 E-value=3.5e-13 Score=136.03 Aligned_cols=244 Identities=15% Similarity=0.102 Sum_probs=150.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++........+.|...+ .|+.| ...+.+++
T Consensus 4 ~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~G----G~y~y~~~- 76 (435)
T PRK10435 4 AKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQG----GPIAYAGE- 76 (435)
T ss_pred CCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----ChhHHHHH-
Confidence 57899999999999999999999999999988864 6777788888888888888886554 34444 33344567
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
+||..++.+.+...........++.+...+++..+++... .+ .. .. ++..++++.+ ..-|+...+..
T Consensus 77 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~-------~~--~~--~~-~~~~~i~~~~-~~ln~~gvk~~ 143 (435)
T PRK10435 77 ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN-------DP--IP--AG-IACIAIVWVF-TFVNMLGGTWV 143 (435)
T ss_pred HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-------Ch--HH--HH-HHHHHHHHHH-HHHHHHhHHHH
Confidence 7999999999887765544455555666666666544210 00 00 11 1111111111 11233333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012732 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 259 (457)
Q Consensus 180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 259 (457)
+.+..+..+...+.+++..+......++... ..+..+. ......++..++....|+|.|.+.+....+|+|||+ |
T Consensus 144 ~~i~~i~~~~~li~~~~~~i~g~~~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r 218 (435)
T PRK10435 144 SRLTTIGLVLVLIPVVGTAIVGWHWFDAATY-AANWNTS-DTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---R 218 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHhh-cccccCC-CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---c
Confidence 4443332222111111111111111111100 0111111 112345778899999999999999999999999996 8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012732 260 TMKMASMISIFITTFFYLCCGCFGYAAFG 288 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (457)
+.+|++..+..++.++|+..........+
T Consensus 219 ~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 219 TVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999977765544443
No 23
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.63 E-value=2.8e-13 Score=138.03 Aligned_cols=283 Identities=11% Similarity=0.105 Sum_probs=165.8
Q ss_pred ccchHHHHHHHHHhhhhccccchhHHHHH-hhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 21 RTGTLRSCVAHIITAVIGSGVLSLAWSTA-QLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~GiL~lP~af~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
|+.+.++.+...+++++|+|++.+|.... .+|....++..++.++.....+..+.|...+ .|+.+- ...+.+++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gG---G~y~y~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDG---GVYSYAKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC---ChhhhHHhH
Confidence 57889999999999999999999998765 5564444566788888888888888886655 333211 233448999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccc-hHhHHHH--HHHhhcCCCcCch
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKH-MLLFGAV--QVVMSQIPDFHNM 176 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~v--~~~l~~~~~l~~l 176 (457)
+||+.+++..+..++.......++.....+.+..+++.... ....+ .+...++ .+-..-.+..|..
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~-----------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~ 145 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG-----------GNNPPSIIGASVLLWCVHFLVLRGVEGA 145 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-----------CCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 99999999999888776666666666666666555442110 00111 1111111 1111123445555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccCC-CCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 177 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGS-IAGVP-TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 177 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
+.++.+..+..+...++.++..+... ..+....+ ..+.+ .........++..++....|+|.|.+....+.+|.||+
T Consensus 146 ~~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~ 224 (468)
T TIGR03810 146 AFINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc
Confidence 55555544433322222222222211 11111000 00100 01111123345578899999999999999999999974
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhccccccccccc----ccc-ccccccccCchhHHHHHHHHHHHHhhhcc
Q 012732 255 PPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT----PGN-LLTGFGFYEPYWLIDLANACIVLHLVGGY 323 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~~-il~~~~~~~~~~~~~~~~~~~~i~~~~s~ 323 (457)
|+.+|++..+...+.++|....+..+...+++. ++. ...-......++...+..+...++.+.+.
T Consensus 225 ----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~ 294 (468)
T TIGR03810 225 ----SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAW 294 (468)
T ss_pred ----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988776555444321 111 11001000123455566666666666654
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=99.63 E-value=4.3e-13 Score=136.09 Aligned_cols=367 Identities=10% Similarity=0.065 Sum_probs=200.5
Q ss_pred cccchHHHHHHHHHhhhhccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++++||+|++..|. +.+.+|. ..++..++.+++.+..+..+.|.... .|++| ++.+.+++
T Consensus 9 ~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~sG----g~~~y~~~ 82 (461)
T PRK10746 9 QRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPVTG----SFAVYAHR 82 (461)
T ss_pred hccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHH
Confidence 788999999999999999999988765 5567787 46778888888888888888886544 34444 67778999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+|++.++.+.+...+.....+.+.....+.+++.+.+. .....+..+..+++..+. .+..|..+.
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~lN-~~gv~~~~~ 148 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAVALVALAN-LAAVRLYGE 148 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 999999999999988887777777777777766654321 111122222222222221 222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---cccCCCCC--hhHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGS---IAGVPTAN--LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
+........+..+++.++..+.......+..+. ..+..+.. ....+.++..++....|+|.|.+.+....+|+||
T Consensus 149 ~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~kn 228 (461)
T PRK10746 149 IEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKN 228 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 322222222111111111111111111111101 11111100 0122446678999999999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhccccccccccccc----cccccccccCchhHHHHHHHHHHHHhhhcccccccc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG----NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQP 329 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 329 (457)
|+ |+++|++..+...+.++|+..........+.+..+ .....+.+...+....+.+++..+..+.+.--....
T Consensus 229 P~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~ 305 (461)
T PRK10746 229 PQ---VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYS 305 (461)
T ss_pred hh---hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 99999999888888888886544433333332211 111111100112233455555555555544222221
Q ss_pred hHHHHHHHHh-hhCCCC-CcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhc--chhh
Q 012732 330 VFAFVERWFT-RKYPSS-GFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNF--WPLA 405 (457)
Q Consensus 330 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~--~~~~ 405 (457)
.-..+...=. +..|.. +..|+ .+.| ..-+.+.....++........|+-+.+++..-+++. ..+.
T Consensus 306 ~sR~l~~~a~~g~lP~~~~~~~~---~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~ 374 (461)
T PRK10746 306 CGRMLYALAKNRQLPAAMAKVSR---HGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVP 374 (461)
T ss_pred HHHHHHHHHhCCCcCHHHHHhCC---CCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 1111111100 011211 00111 1223 222333323333344444456655555554433322 3788
Q ss_pred hhhhhHHHHhHhccC
Q 012732 406 IYFPVEMYFVQKKIG 420 (457)
Q Consensus 406 ~ilP~l~~~~~~~~~ 420 (457)
++++++-+++.||+.
T Consensus 375 w~~i~~~~i~~r~~~ 389 (461)
T PRK10746 375 WFVILISQLRFRRAH 389 (461)
T ss_pred HHHHHHHHHHHHHhc
Confidence 889999999987653
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.63 E-value=4.2e-13 Score=136.93 Aligned_cols=251 Identities=13% Similarity=0.087 Sum_probs=155.8
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhC-cchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLG-WIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G-~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.+++.+..+++++|+|++.+|....+.| ....++..++.++........+.|...+...++| ...+.+++
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG----G~y~y~~~ 81 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG----GIYAYARE 81 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC----ChhhhHHh
Confidence 568999999999999999999999999887544 3234566778888888888888886654322134 33346799
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+||+.+++..+...+.......++.....+++..+++....+ .+ .....+.++..++...+ -.+..|...+
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~-----~~--~~~~~~~~~~~~~~~~l-n~~Gi~~~~~ 153 (473)
T TIGR00905 82 GFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG-----NP--VPSILGASVLLWVFTFL-VLRGVRQAAF 153 (473)
T ss_pred HcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-----Cc--HHHHHHHHHHHHHHHHH-HHhCHHHHHH
Confidence 9999999999998877666666667666667777666531100 00 00000111111111122 2344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccc
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPEN 258 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~ 258 (457)
++.+.....+...++.++..+.. .+.+....+..+...+.....+..+..++....|+|.|.+......+|+|| +
T Consensus 154 i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~--- 228 (473)
T TIGR00905 154 INTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K--- 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---
Confidence 55555544333322222222221 111110001101000111122345678899999999999999999999999 5
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhccccccc
Q 012732 259 KTMKMASMISIFITTFFYLCCGCFGYAAF 287 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~f 287 (457)
|+.+|++..+..++.++|+..........
T Consensus 229 r~iPrai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 229 SDVGKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999997766544333
No 26
>PRK15049 L-asparagine permease; Provisional
Probab=99.63 E-value=4.4e-13 Score=137.25 Aligned_cols=366 Identities=13% Similarity=0.104 Sum_probs=193.2
Q ss_pred cccchHHHHHHHHHhhhhccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++.+||+|++..|- +.+.+|- .+++..++.+++....+..+.|.... .|+.| .....+++
T Consensus 27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~-~P~aG----g~y~y~~~ 100 (499)
T PRK15049 27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLH-RPSSG----SFVSYARE 100 (499)
T ss_pred hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHH
Confidence 788999999999999999999988876 6667786 56888888999999999999987654 34444 55677899
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+|++.++++.+...+.......+.....+.++..+ +. .+ . .+...+.++..++...+. .+..|....
T Consensus 101 ~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~~-----~---~~~~~~~~~~~~l~~~iN-~~gvk~~~~ 168 (499)
T PRK15049 101 FLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--FG-----G---VPQWVFALAALTIVGTMN-MIGVKWFAE 168 (499)
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--CC-----C---CcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999887765544443333334333221 10 00 0 111111111122222221 222333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC---CCCC--hhHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGV---PTAN--LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
+.....+..+..++..++..+.......+.+....+. .+.. ....+...+.++...+|+|.|.+.+....+|+||
T Consensus 169 i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 169 MEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 3333332222111121112222111111111110011 0000 0112345566778899999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhcccccccccccc----ccccccccccCchhHHHHHHHHHHHHhhhcccccccc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP----GNLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQP 329 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 329 (457)
|+ |+.+|++..+...+.++|+..........+.+.. +....-+.....++...+.++...+..+.+.--....
T Consensus 249 P~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~ 325 (499)
T PRK15049 249 PQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYC 325 (499)
T ss_pred hh---hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 8899999999988888888655543333332211 1111111100112334455555555555544222222
Q ss_pred hHHHHHHHHhhh--CCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC--hHHHHHHhhhhhcchhh
Q 012732 330 VFAFVERWFTRK--YPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY--FNQVLGVLGALNFWPLA 405 (457)
Q Consensus 330 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~~~Ga~~~~~~~ 405 (457)
.-..+.. +.++ .|+ +-.+.+.++.| ..-+.+..++.++..++....|+ ++.++++.+. +..+.
T Consensus 326 ~sR~l~a-~Ardg~lP~--~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~--~~li~ 392 (499)
T PRK15049 326 TGRILRS-MAMGGSAPS--FMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASL--GIIAS 392 (499)
T ss_pred HHHHHHH-HHhcCCcCH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHHHH
Confidence 1111111 1111 121 00011111223 22233333333333333334443 5556666543 34889
Q ss_pred hhhhhHHHHhHhcc
Q 012732 406 IYFPVEMYFVQKKI 419 (457)
Q Consensus 406 ~ilP~l~~~~~~~~ 419 (457)
|++|++.+++.||+
T Consensus 393 y~~~~~~~l~~R~~ 406 (499)
T PRK15049 393 WAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988753
No 27
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.61 E-value=6.3e-13 Score=135.44 Aligned_cols=242 Identities=15% Similarity=0.083 Sum_probs=149.3
Q ss_pred cccchHHHHHHHHHhhhhccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++.....++++||+|++..|- +.+++|. ..+...++++++.......+.|.... .+.. .++.+.+++
T Consensus 19 ~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~~----~~~~~ya~~ 92 (469)
T PRK11049 19 RRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLEY----KSFSDFASD 92 (469)
T ss_pred hccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC----CcHHHHHHH
Confidence 889999999999999999999999755 7778887 46777778888888888888876432 1211 256678999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+||..++++.+...+.......+.....+.++..+.+. .....+..+...+...+. ....+....
T Consensus 93 ~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~~~~~~~~iN-~~g~~~~~~ 158 (469)
T PRK11049 93 LLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLAVVLLLLSLN-LATVKMFGE 158 (469)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 999999999999998877555555555666555544321 111111111111112221 223344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccc---ccccCCCCC--hhHHHHHHHHHHHHHHhhccCcceehhhhcccc
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIEN-GRIKG---SIAGVPTAN--LADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 252 (457)
++.+..+..+...++.++..+...... +...+ ...+..+.. ....+.+++.++....|+|.|.+.+....+|+|
T Consensus 159 i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~k 238 (469)
T PRK11049 159 MEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETK 238 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhc
Confidence 444433333322222222222211111 00110 011100000 012344677899999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHhhhcccc
Q 012732 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGY 284 (457)
Q Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 284 (457)
||+ |+++|++..+.....+.|......-.
T Consensus 239 nP~---r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 239 DPE---KSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred CHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 996 89999998777777888875555433
No 28
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.61 E-value=1.2e-12 Score=134.03 Aligned_cols=242 Identities=11% Similarity=0.066 Sum_probs=154.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhH-HHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLA-WSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP-~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++.++|+|++..| .+.+++|....+...++.+++.......+.|.........| .|.+.+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG----~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG----SFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHH
Confidence 46789999999999999999999865 56667775444667888888888888888887654322222 67788999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+||..++++.+...+.....+.+.....+..+..+.+. .+...+..+..++...+ -.+..|..+.
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~i-n~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK-------------VNPAVWIAIFYVFIVII-NLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------CCHHHHHHHHHHHHHHH-HHhcchHHHH
Confidence 999999999999998888777777777776666543210 11112222222222222 2344455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cc------ccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhcc
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGRIKG--SI------AGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 250 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 250 (457)
++.......+...+..++..+.....+.+... .. .+.++........++..++....|+|.|.+......+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 55444333222222222222222222111110 00 11111100112456778999999999999999999999
Q ss_pred ccCCCccchhhhHHHHHHHHHHHHHHHhhhcc
Q 012732 251 LKSPPPENKTMKMASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 251 m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (457)
+|||+ |+.+|++..+..++.++|+.....
T Consensus 223 ~knP~---r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 223 AANPR---KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99996 899999999999999999976543
No 29
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.60 E-value=1.2e-12 Score=132.93 Aligned_cols=236 Identities=11% Similarity=0.066 Sum_probs=150.6
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHH-HhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWST-AQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af-~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++++||+|++..|-.. +++|. ..++..++.++..+..+..+.|.... .|..| ++.+.+++
T Consensus 11 ~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~aG----g~y~~~~~ 84 (456)
T PRK10238 11 KRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-EPVAG----SFSHFAYK 84 (456)
T ss_pred hccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCC----CHHHHHHH
Confidence 78999999999999999999998887755 46675 56778888888888888888886544 33334 55666888
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+||..++++.+...+.....+.+.....++.++.+.+. .....+..++..+...+. ....|....
T Consensus 85 ~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~~lN-~~gv~~~~~ 150 (456)
T PRK10238 85 YWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVINAIN-LTNVKVFGE 150 (456)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 999999999999999988888888877777777654321 111111122122111221 122334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccccccC-C--CCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVIENGR-IKGSIAGV-P--TANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
+.....+..+...+++++..+.......+ ......+. + ... ...+..+..+++...|+|.|-+......+|+|||
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP 229 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFL-PHGFTGLVMMMAIIMFSFGGLELVGITAAEADNP 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCc-cccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCh
Confidence 44433333332222222222222122111 11111110 1 011 1123356678888999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhh
Q 012732 255 PPENKTMKMASMISIFITTFFYLCC 279 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~ 279 (457)
+ |+.+|++..+.....+.|...
T Consensus 230 ~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 230 E---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHH
Confidence 6 899999988888888777643
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.59 E-value=2.4e-12 Score=130.82 Aligned_cols=240 Identities=16% Similarity=0.105 Sum_probs=148.6
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHH-HHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWS-TAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..+++++|+|++.+|.. .+.+|. ..++..++.++.....+..+.|...+ .|..| ...+.+++
T Consensus 8 ~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~-~P~~G----g~y~y~~~ 81 (457)
T PRK10580 8 KRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVH-NPAAS----SFSRYAQE 81 (457)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHHHHHH
Confidence 7889999999999999999999999776 556776 46888888999999999999987654 34333 44457899
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
.+||..++++.+...+.....+.+.....+.++..+.+. .....+.+...++...+ -.+..|....
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l-n~~gv~~~~~ 147 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSVVLIICAV-NLMSVKVFGE 147 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHHHHHH-HHccchhHHH
Confidence 999999999999887766555555555555555443321 11112222222222222 2334454555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---Hhccccccccc-CCCCC-hhHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKVI---ENGRIKGSIAG-VPTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
+.....+..+...++.++..+.-.. .+........+ .++.. ....+.+.+.++....|+|.|.+......+|+||
T Consensus 148 ~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~kn 227 (457)
T PRK10580 148 LEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKD 227 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcC
Confidence 4444333332222121111111111 11100000000 11000 0122346778899999999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhcc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (457)
|+ |+.+|++..+...+.++|......
T Consensus 228 P~---k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 228 PE---KSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred hh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 889999998887778888755433
No 31
>TIGR00909 2A0306 amino acid transporter.
Probab=99.59 E-value=5.8e-13 Score=134.50 Aligned_cols=284 Identities=13% Similarity=0.028 Sum_probs=174.6
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHH-hhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTA-QLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++.+...+++++|+|++.+|.... ..|. ..++..++.++........+.|..++ .+++| ...+..++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~-~p~~G----g~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAM-LPVAG----SPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC----cceeeHHH
Confidence 478999999999999999999999987655 4454 35666777788888888888887654 33333 23345778
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCcccc---CCccc--hHhHHHHHHHhhcCCCc
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAY---GDTKH--MLLFGAVQVVMSQIPDF 173 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~--~~i~~~v~~~l~~~~~l 173 (457)
.+||+.+++..+...+.....+.++....++.+..+++....+.+ ..... +...+ ..+...++.-+...+..
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLP---AVLTAKPGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc---hhhhcCCcccccccHHHHHHHHHHHHHHHhCc
Confidence 899999999999998888888888888888988887763211100 00000 01111 11111222222223455
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 174 HNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 174 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
+...+++.+.....+...++.++....+. +. ++..+ ..+ ....+...++...+|+|.|.+......+|+||
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~--~~~~~---~~~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~ 223 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHF---AS--NNYTP---FMP-MGFGGVGAATALVFFAFIGFEAISTAAEEVKN 223 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cH--HhcCC---CCC-CcHHHHHHHHHHHHHHHhhHHHHHhhHHhccC
Confidence 66666666665554433222222222111 11 11111 111 12346678899999999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhccccccccccc--cc-cccc-cccccCchhHHHHHHHHHHHHhhhccc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT--PG-NLLT-GFGFYEPYWLIDLANACIVLHLVGGYQ 324 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~--~~-~il~-~~~~~~~~~~~~~~~~~~~i~~~~s~p 324 (457)
|+ |+.+|++..+..++.++|+..........+.+. ++ .... -......++...+..+...+....+..
T Consensus 224 p~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 295 (429)
T TIGR00909 224 PE---RDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVML 295 (429)
T ss_pred cc---ccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 96 889999999999999999987655443332221 11 1100 000012344555566666666666543
No 32
>PRK11021 putative transporter; Provisional
Probab=99.59 E-value=4.7e-12 Score=126.99 Aligned_cols=229 Identities=14% Similarity=0.136 Sum_probs=142.7
Q ss_pred hHHHHHHHHHhhhhccccchhHHHHH-hhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCC
Q 012732 24 TLRSCVAHIITAVIGSGVLSLAWSTA-QLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGK 102 (457)
Q Consensus 24 s~~~a~~~li~~~iG~GiL~lP~af~-~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk 102 (457)
+.++++...+++++|+|++.+|-... .+|- ..++..++.++........+.|...+ .|++| .....+++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~-~P~aG----G~y~y~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH-FPHAG----GPAHFVGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHhHHHHhCc
Confidence 67899999999999999999987655 5564 57888888999998888999987665 34444 444568889999
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHH
Q 012732 103 TQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVI 182 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~ 182 (457)
+.+++..+...........+........+..+++. + . .. .+...+...+++- .-|++..+..+.+
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~---~~-~~~~~~~~~~~~~---~ln~~Gv~~~~~~ 140 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S---S---WQ-LLLAELLTLALLW---LLNLRGASSSANL 140 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C---C---ch-HHHHHHHHHHHHH---HHHHhhHHHHHHH
Confidence 99999998877644433334434444444444321 0 0 00 1111111111111 2233344444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccchhhh
Q 012732 183 AAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMK 262 (457)
Q Consensus 183 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~ 262 (457)
..+..+... .++.... ...+....+. ..++.. ..++.++..++....|+|.|.+......+|+|||+ |+++
T Consensus 141 ~~~~~~~~~-~i~~~~~---~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iP 211 (410)
T PRK11021 141 QTVIALLIV-ALVVAIW---WAGDIKPADI-PFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFP 211 (410)
T ss_pred HHHHHHHHH-HHHHHHH---HHcCCchhcC-CCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---cccc
Confidence 443332111 1111111 1111111111 111111 12345677899999999999999999999999996 8999
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q 012732 263 MASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 263 ~~~~~~~~~~~~~Y~~~g~~ 282 (457)
|++..+..++.++|+.....
T Consensus 212 rAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 212 RALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987654
No 33
>PRK10836 lysine transporter; Provisional
Probab=99.57 E-value=3.1e-12 Score=131.06 Aligned_cols=244 Identities=12% Similarity=0.059 Sum_probs=141.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..++++||+|++..|- +.+++|....++..++++++....+..+.|.... .|+.| .....+++
T Consensus 14 ~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P~sG----g~y~y~~~ 88 (489)
T PRK10836 14 RRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MPVSG----SFATYGQN 88 (489)
T ss_pred cccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCC----CHHHHHHH
Confidence 789999999999999999999999986 5667886546888999999999999999997655 34444 45566788
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhh-HHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTS-MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
.+|+..++++.+...+.... +.+.-....+. +..+.+. .....+..+..+++..+. ....+..+
T Consensus 89 ~~g~~~gf~~Gw~~~~~~~~-~~a~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~lN-~~gv~~~~ 153 (489)
T PRK10836 89 YVEEGFGFALGWNYWYNWAV-TIAVDLVAAQLVMSWWFPD-------------TPGWIWSALFLGVIFLLN-YISVRGFG 153 (489)
T ss_pred HcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCC-------------CchHHHHHHHHHHHHHHH-HHcchhhh
Confidence 89998888888877654333 23222222222 2221110 011111111112112121 22233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccccccccCCCC-Ch-hHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 178 WLSVIAAIMSFAYSFIGFGLGFAKVI--ENGRIKGSIAGVPTA-NL-ADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 178 ~~s~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
.+..+..+..+...+..++..+.... ..+.......+.++. .+ ...+...+.+.....|+|.|.+.+....+|+||
T Consensus 154 ~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~kn 233 (489)
T PRK10836 154 EAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESED 233 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcC
Confidence 33222222222111111111121111 111110001111100 01 112334555666678999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGCFGYAA 286 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 286 (457)
|+ |+.+|++..+...+.++|+.....-...
T Consensus 234 P~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 234 PA---KNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 96 8999999999999999999765443333
No 34
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.56 E-value=4.1e-13 Score=131.55 Aligned_cols=363 Identities=14% Similarity=0.112 Sum_probs=221.9
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHh-hCc-chHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQ-LGW-IAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~-~G~-~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+|+.+.+.++..+++.++|+|++..|..... +|= ..+.+..+++++++...+...+|.-.. -+++|-+ +. ...
T Consensus 11 ~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~-ipksGgd-~a---yi~ 85 (479)
T KOG1287|consen 11 KKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS-IPKSGGD-YA---YIS 85 (479)
T ss_pred cceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcc-hh---hHH
Confidence 6889999999999999999999999998764 443 336777888999999999999995443 4555542 23 367
Q ss_pred HHcCCcchhhhHHHHHHHHHHHH-HHHHHHhhhh-HHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCc
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTA-VAYVITTSTS-MRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 175 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~ 175 (457)
++||+..++...+.-.+....+. ..+-+.++++ ++..++ .|. ..+..--.+..+++..+ ...|...
T Consensus 86 ~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c~----------~p~~~~~lla~~~l~~l-t~~n~~~ 153 (479)
T KOG1287|consen 86 EAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LCD----------VPRVASKLLAAALLVLL-TLINSFS 153 (479)
T ss_pred HHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CCC----------CchHHHHHHHHHHHHHH-HHHhhhh
Confidence 78999888777766555554444 7777788887 666554 222 11112122333333333 3566777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCC--CC-hhHHHHHHHHHHHHHHhhccCcceehhhhcccc
Q 012732 176 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPT--AN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252 (457)
Q Consensus 176 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 252 (457)
.++.+.+..+.+..-.+.+...++....... .++.++.++ .+ ...+..+.-.++-...|||.|...+-.+.+|+|
T Consensus 154 V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~--~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEik 231 (479)
T KOG1287|consen 154 VKWATRVQIVFTIAKLLALLLIIITGLYLLF--WGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIK 231 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhchheeE--ecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhc
Confidence 7777777777766554444433333322111 111111110 11 112233556788889999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHhhhcccccccccccc---cccccccccc-CchhHHHHHHHHHHHHhhhccccccc
Q 012732 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP---GNLLTGFGFY-EPYWLIDLANACIVLHLVGGYQIFSQ 328 (457)
Q Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~---~~il~~~~~~-~~~~~~~~~~~~~~i~~~~s~pl~~~ 328 (457)
||. |++|+++..++.+++++|+.+=+..+.+-..+.. +-+-..+.+. .+.+. ..+.+++.++.+.+.-..++
T Consensus 232 nP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~if 307 (479)
T KOG1287|consen 232 NPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIF 307 (479)
T ss_pred Ccc---ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHH
Confidence 996 9999999999999999999888776666543321 1121122210 12233 56666777777766544333
Q ss_pred chHHHHHHHHhh-hCCCC--CcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCChHHHHHHhhhhhcchhh
Q 012732 329 PVFAFVERWFTR-KYPSS--GFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPYFNQVLGVLGALNFWPLA 405 (457)
Q Consensus 329 p~~~~~~~~~~~-~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~v~~~~Ga~~~~~~~ 405 (457)
..-..+...-.+ +.|+. ....+++ -| ....+...+..++..+.+|+..+++..+=.......
T Consensus 308 s~SR~~~~~areG~LP~~~s~i~~~~~---TP------------~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~ 372 (479)
T KOG1287|consen 308 SSSRLFYAGAREGHLPAFFSMISVRRF---TP------------RPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRG 372 (479)
T ss_pred HHHHHHHHHHHccCccHHHHhhcCCCC---CC------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 322221111110 11210 0000000 02 123334444455556677999999999777666667
Q ss_pred hhhhhHHHHhHhccC
Q 012732 406 IYFPVEMYFVQKKIG 420 (457)
Q Consensus 406 ~ilP~l~~~~~~~~~ 420 (457)
+.+=+++|++.++++
T Consensus 373 l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 373 LSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHhhCCC
Confidence 777888888876654
No 35
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.55 E-value=2.3e-12 Score=133.37 Aligned_cols=254 Identities=14% Similarity=0.089 Sum_probs=160.4
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHH--HhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWST--AQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+|+.+.++.++..++.++|+|++.+|-.. ..+|.. .++..++.++.+...+..+.|.... -|+.|.. +.| .+
T Consensus 27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~sGg~-Y~y---~~ 100 (557)
T TIGR00906 27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPKAGSA-YLY---SY 100 (557)
T ss_pred hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCcc-eee---HH
Confidence 88999999999999999999999998643 347765 5777888888888888888887655 3455532 455 56
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccC----CCCCccccCCc-cchHhHHHHHHHhhcCCC
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHRE----GHNAPCAYGDT-KHMLLFGAVQVVMSQIPD 172 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~-~~~~i~~~v~~~l~~~~~ 172 (457)
+.+|+..++++.+...+.....+.+.....++++.+++......-. ....+ ..+.. ....+..++++-+...+.
T Consensus 101 ~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 101 VTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHHhc
Confidence 7799999999999988887777776667777777776643110000 00000 01111 111111111122223355
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhcccc
Q 012732 173 FHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252 (457)
Q Consensus 173 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 252 (457)
.|..++++.+.....+...+++++..+.+...++.......+.++..+ ..+.+++.+....+|+|.|...+....+|.|
T Consensus 180 ik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p-~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 180 VKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMP-YGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCC-cchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 666666666555544433222222222221100000000001001111 1245678899999999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHhhhcccc
Q 012732 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGY 284 (457)
Q Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 284 (457)
||+ |+++|++..+..+++++|..+...-.
T Consensus 259 nP~---r~iP~aii~sl~i~~vlY~lv~~~l~ 287 (557)
T TIGR00906 259 NPQ---RAIPIGIVTSLLVCFVAYFLMSAALT 287 (557)
T ss_pred Ccc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 996 88999999999999999997765533
No 36
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.53 E-value=8e-12 Score=126.61 Aligned_cols=235 Identities=13% Similarity=0.021 Sum_probs=148.6
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+|+.+.++.....++.++|....+.+.+.+..|+..-++..++.+++....+..+.|.... .|++| .....+++.
T Consensus 6 ~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~-~P~~G----g~y~~~~~~ 80 (442)
T TIGR00908 6 KKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM-IPTAG----GGYGFARRA 80 (442)
T ss_pred hccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCC----CHHHHHHHH
Confidence 7889999999999999999555667888899999755566666777777777778886554 33444 444567999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
+||..+++..+...+.......++....++++..+++.. ......++...+...+ -.+..|..+++
T Consensus 81 ~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------------~~~~~~~~~~~~~~~l-n~~g~~~~~~i 146 (442)
T TIGR00908 81 FGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------------PGWLAALVFYIVFIGI-NILGVGEAAKL 146 (442)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------chhHHHHHHHHHHHHH-HHHHHHHHHhH
Confidence 999999999999888888888888888888887765421 1111111111111221 12233333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc----ccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCC
Q 012732 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI----AGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 255 (457)
Q Consensus 180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 255 (457)
+....+..+. .+.+ .......+.+..... ++.+... ...+.+++.++...+|+|.|.+......+|+|||+
T Consensus 147 ~~~~~~~~~~---~l~i-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~ 221 (442)
T TIGR00908 147 EFVVTAVAII---ALGV-FIGAMVPHFDSANLFNGPQTGASSFL-PGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK 221 (442)
T ss_pred HHHHHHHHHH---HHHH-HHHHHhccCCHHHhccCCccCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 3333222221 1111 110011110000000 0000011 11234677888899999999999999999999996
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhc
Q 012732 256 PENKTMKMASMISIFITTFFYLCCGC 281 (457)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~Y~~~g~ 281 (457)
|+.+|++..+..++.++|...-.
T Consensus 222 ---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 222 ---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred ---cccCHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988888876543
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.52 E-value=6.3e-12 Score=129.32 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=144.1
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHH-HHhhCcch-HHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWS-TAQLGWIA-GPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~-g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+|+.+.++.+...+++++|+|++..|.. .+++|-.. ..+..++.++.....+..+.|.... .|++| ......+
T Consensus 41 ~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~-~P~sG----G~y~~~~ 115 (501)
T TIGR00911 41 KKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTT-IPKSG----GEYNYIL 115 (501)
T ss_pred CccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCC----chhhhHH
Confidence 7889999999999999999999999875 45567432 2345567777778888888886654 33444 3334567
Q ss_pred HHcCCcchhhhHHHHHHH-HHHHHHHHHHHhhhhHHH-HHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCc
Q 012732 98 LNLGKTQTWFCGLLQNLT-FYGTAVAYVITTSTSMRA-IQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHN 175 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~-~~g~~~~y~i~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~ 175 (457)
+.+||..+++..+..... ..+.+..+....++++.+ +.+.. ..+ .+......+....+...+ -.+..|.
T Consensus 116 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-------~~~-~~~~~~i~~~~i~~~~~l-n~~Gvk~ 186 (501)
T TIGR00911 116 EVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC-------EVP-EWAIRLVAVLCVLLLTLV-NCLSVKW 186 (501)
T ss_pred hHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------CCc-hHHHHHHHHHHHHHHHHH-HHhhhHH
Confidence 789999888887765432 233444444555555422 22110 000 000011111111111111 2233444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccc-CCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 176 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAG-VPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 176 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
..+++.+.....+...++.++..+.....++....+.+. .++. .....++..++...+|+|.|.+.+..+.+|+|||
T Consensus 187 ~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP 264 (501)
T TIGR00911 187 ATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT--ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP 264 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC--CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc
Confidence 455554444443332222222223222111111111111 1111 1224466788999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhcccc
Q 012732 255 PPENKTMKMASMISIFITTFFYLCCGCFGY 284 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy 284 (457)
+ |+.+|++..+..++.++|++....-.
T Consensus 265 ~---r~iPrAi~~s~~~v~~~Y~l~~~a~~ 291 (501)
T TIGR00911 265 Y---RTLPIAIIISMPIVTFIYVLTNIAYF 291 (501)
T ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 89999999999999999998755443
No 38
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.48 E-value=4.7e-12 Score=124.74 Aligned_cols=286 Identities=14% Similarity=0.113 Sum_probs=174.4
Q ss_pred ccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHc
Q 012732 21 RTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNL 100 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 100 (457)
++.|.+|..+.++++++|+|++.+|...++.+--.+.+..++.++........+.+..++.+. .+..|..++.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~------~~~~~~~~~~~ 74 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE------KNFSEILSKYL 74 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHh
Confidence 367889999999999999999999998876555567778888888888888888887655322 27889999999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHH
Q 012732 101 GKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLS 180 (457)
Q Consensus 101 Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s 180 (457)
||+.+++..+....+....+.......++.+..... + .+..+...+..+++......+.++...+++
T Consensus 75 Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~---------~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~ 141 (359)
T TIGR00912 75 GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----P---------RTPIIVIIILIIIVSIYIVRKGIEVLLRTA 141 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C---------CCCHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 999999999888877777766555556665554321 0 011122222222222222334555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHH-HHHHhhccCcceehhhhccccCCCccch
Q 012732 181 VIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQAL-GDIAFAYPYSIILLEIQDTLKSPPPENK 259 (457)
Q Consensus 181 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~~m~~p~~~~~ 259 (457)
.+.....+... ...... ....+. +.++..+.. ..+..+.+.+. +...++|.+...+.....++|+| |
T Consensus 142 ~i~~~~~i~~~--~~il~~-~~~~~~----~~~~l~P~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~----~ 209 (359)
T TIGR00912 142 EILLIIFLILF--ILVLIL-LAPKLG----NIKNLLPVL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK----K 209 (359)
T ss_pred HHHHHHHHHHH--HHHHHH-Hhcccc----cHHHccCcc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----h
Confidence 55544433210 011111 111111 111111111 11233445443 47889999999999999999987 8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccccccccc-------cccccccCch---hHHHHHHHHHHHHhhhcccccccc
Q 012732 260 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPGNL-------LTGFGFYEPY---WLIDLANACIVLHLVGGYQIFSQP 329 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i-------l~~~~~~~~~---~~~~~~~~~~~i~~~~s~pl~~~p 329 (457)
+.+|+...+..++.++|...-......+|.+..++. ..... .++ ....+...........+.-+..+.
T Consensus 210 ~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~--~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~ 287 (359)
T TIGR00912 210 KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLIN--IGDFIERFELIVMTFWVFIIFVKIAFYLYI 287 (359)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999877777777776533211 11111 111 122334444455555555455555
Q ss_pred hHHHHHHHHh
Q 012732 330 VFAFVERWFT 339 (457)
Q Consensus 330 ~~~~~~~~~~ 339 (457)
....+++.++
T Consensus 288 ~~~~~~~~~~ 297 (359)
T TIGR00912 288 AVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHhC
Confidence 5555555544
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.47 E-value=2.3e-11 Score=123.29 Aligned_cols=240 Identities=12% Similarity=0.119 Sum_probs=145.2
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHH-HhhCcc-hHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWST-AQLGWI-AGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af-~~~G~~-~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+|+.+.++.....++.++|+|++..|... +..|-. ..++..++.+++....+..+.|..... |++|.. +.| .+
T Consensus 7 ~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~-P~~GG~-y~y---~~ 81 (445)
T PRK11357 7 QRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY-PENGAD-YVY---LK 81 (445)
T ss_pred cccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCc-eee---HH
Confidence 78899999999999999999999998764 455643 345667778888888888888866553 344432 455 56
Q ss_pred HHcCCcchhhhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCch
Q 012732 98 LNLGKTQTWFCGLLQNL-TFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 176 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l 176 (457)
+.+||..+++..+.... ........+....++++....+. .+ .. .....+..+..+-..-.+..+..
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~---------~~--~~-~~~~~~~~~~~~~~ln~~gv~~~ 149 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI---------DP--LL-GKFIAAGLIIAFMLLHLRSVEGG 149 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------ch--HH-HHHHHHHHHHHHHHHHHhhhhHH
Confidence 88999999888886443 33334445555666665443210 00 00 01111111111111123444445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCc
Q 012732 177 EWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 256 (457)
Q Consensus 177 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 256 (457)
..++.+..+..+...+++++..+.. ...++.. .....+ ......+.+++.++....|+|.|.+......+|+|||+
T Consensus 150 ~~v~~~~~~~~~~~l~~~ii~g~~~-~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~- 225 (445)
T PRK11357 150 AAFQTLITIAKIIPFTIVIGLGIFW-FKAENFA-APTTTA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPG- 225 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCcccc-CCCccc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc-
Confidence 5555555444333222222222211 1111110 000000 01111234567889999999999999999999999996
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhcc
Q 012732 257 ENKTMKMASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (457)
|+.+|++..+..++.++|+.....
T Consensus 226 --r~iP~Ai~~~~~i~~~~Y~l~~~~ 249 (445)
T PRK11357 226 --KTMPRALIGSCLLVLVLYTLLALV 249 (445)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999876654
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.47 E-value=3e-11 Score=122.32 Aligned_cols=348 Identities=15% Similarity=0.114 Sum_probs=187.4
Q ss_pred HHhhhhccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhhHH
Q 012732 32 IITAVIGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGL 110 (457)
Q Consensus 32 li~~~iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~~~ 110 (457)
.++++||+|++..|- +.++.|. ..++..++.+++....+..+.|...+ .|++| ...+.+++.+||+.++.+.+
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~-~P~~G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVA-TPDTG----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC----CHHHHHHHHcChHHHHHHHH
Confidence 467899999999877 6778886 47888999999999999999987654 34444 56677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHHHH
Q 012732 111 LQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAY 190 (457)
Q Consensus 111 ~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~~~ 190 (457)
...+.....+.+.....+..++.+.+. .....+..+...+...+. ....|..+.+..+..+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVPG-------------IPIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc-------------CcHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHH
Confidence 988877666655554444444332110 111111111111122221 233334444444433333322
Q ss_pred HHHHHHHHHHHHHHhcccccccccC----CC-CChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccchhhhHHH
Q 012732 191 SFIGFGLGFAKVIENGRIKGSIAGV----PT-ANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMAS 265 (457)
Q Consensus 191 ~~i~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~ 265 (457)
.+..++..+... ..........+. ++ ....+.+.++..++....|+|.|.+.+....+|+|||+ |+.+|++
T Consensus 143 li~~ii~~~~~~-~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~---r~iPrai 218 (446)
T PRK10197 143 ILAFIFLGAVAI-SGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE---KHIVRAT 218 (446)
T ss_pred HHHHHHHHHHHh-cCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh---hhHHHHH
Confidence 222222222111 111110011111 00 00012345777999999999999999999999999996 8999999
Q ss_pred HHHHHHHHHHHHhhhccccccccccccc-----c---ccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHHHH
Q 012732 266 MISIFITTFFYLCCGCFGYAAFGNDTPG-----N---LLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVERW 337 (457)
Q Consensus 266 ~~~~~~~~~~Y~~~g~~gy~~fg~~~~~-----~---il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 337 (457)
..+...+.++|+.....-....+.+..+ . ..... ..++...+.++...+..+.+..-........+...
T Consensus 219 ~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ 295 (446)
T PRK10197 219 NSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSL 295 (446)
T ss_pred HHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987554422222222111 1 11111 12334455556555555555433222222221111
Q ss_pred Hhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcC--ChHHHHHHhhhhhcchhhhhhhhHHHH
Q 012732 338 FTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFP--YFNQVLGVLGALNFWPLAIYFPVEMYF 414 (457)
Q Consensus 338 ~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~v~~~~Ga~~~~~~~~ilP~l~~~ 414 (457)
=.+ ..|+. + .+.+..+.| ..-..+...+.++..+.....| .++.++++.+... .+.+.++++-++
T Consensus 296 ardg~lP~~-~-~~~~~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i 363 (446)
T PRK10197 296 SRRGDAPAV-M-GKINRSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQL 363 (446)
T ss_pred HcCCCcCHH-H-HhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 000 01210 0 000111223 2222233233333333333333 3677777776554 588889988888
Q ss_pred hHhc
Q 012732 415 VQKK 418 (457)
Q Consensus 415 ~~~~ 418 (457)
+.||
T Consensus 364 ~lr~ 367 (446)
T PRK10197 364 RMRK 367 (446)
T ss_pred HHHH
Confidence 8766
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.45 E-value=1.3e-10 Score=125.93 Aligned_cols=248 Identities=16% Similarity=0.105 Sum_probs=159.4
Q ss_pred cccchHHHHHHHH-Hhhhhccccch-hHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHI-ITAVIGSGVLS-LAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~l-i~~~iG~GiL~-lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
.++.++++.++.- +..++|+|++. +++...++|...+++.++++++++..++.-+.+......++.|- .| .+.+
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG---~Y-~yis 150 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG---AY-YLIS 150 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH---HH-HHHH
Confidence 5677888888888 99999999766 67788899987788999999999999999999876543444442 23 4578
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
+.+|+..+..+.+...+.....+..|.+.+++++..+++..+... . ..+ ....+.+.++..+++.. -++...+
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-~-~~~-~~~~~iia~i~l~ll~~----In~~Gvk 223 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI-M-VDP-INDIRIYGTVTVVVLLG----ISFAGME 223 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-c-cCc-cccchHHHHHHHHHHHH----HHHhhHH
Confidence 899999999999999888888899999999999988875321100 0 000 01112111122222222 2334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-c-ccccccc-----CC-CCCh-hHHH-HHHHHHHHHHHhhccCcceehhh
Q 012732 178 WLSVIAAIMSFAYSFIGFGLGFAKVIENG-R-IKGSIAG-----VP-TANL-ADKL-WLAFQALGDIAFAYPYSIILLEI 247 (457)
Q Consensus 178 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~-~~~~~~~-----~~-~~~~-~~~~-~~~~~~~~~~~faf~~~~~i~~i 247 (457)
+.+.+..++++...+.++.. +...+... . ......+ +. +..+ .... ..++..++++++||.|......+
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~-iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~ 302 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNI-FVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANI 302 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555554443221111111 11111100 0 0000000 00 0000 0011 12567888888899999999999
Q ss_pred hccccCCCccchhhhHHHHHHHHHHHHHHHhhhcc
Q 012732 248 QDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 248 ~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (457)
.+|+|||+ |++++++..++.+++++|+++.+.
T Consensus 303 sgElKnP~---r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 303 SGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997 899999999999999999988753
No 42
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.44 E-value=1.3e-10 Score=114.66 Aligned_cols=365 Identities=13% Similarity=0.065 Sum_probs=230.6
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+....+..+.-++..||+| .++.-.+.+++|....++..++++.+.+..+.-|.|..-.. |..| +|...+.+
T Consensus 43 kR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~-P~sG----sF~~ya~r 117 (541)
T COG0833 43 KRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFY-PVSG----SFSTYATR 117 (541)
T ss_pred hhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC----chhhhhhh
Confidence 789999999999999999999 56789999999999999999999999999999999966543 3433 68999999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhh--cCCCcCch
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS--QIPDFHNM 176 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~--~~~~l~~l 176 (457)
..++..++.+.+..++....++..-++..+..++.+.+.. .+...|..++.++++.+- -.|.+.+.
T Consensus 118 fvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~------------v~~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 118 FVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT------------VPPWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred hcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC------------CChHHHHHHHHHHHHHHHHhccccccee
Confidence 9999999999999999999999999999999999987531 233566666666555443 46667777
Q ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCC-hhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 177 EWL-SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 177 ~~~-s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
.++ |.+-++.++.++++.++. ...+..+++.-+. +-..++. -...+.++...+-...|||.|-+.+--...|-+||
T Consensus 186 Efw~s~iKV~~ii~Fii~gii~-~~Gg~~~~~~ig~-~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 186 EFWFSSIKVLTIIGFIILGIII-ICGGGPTHGYIGF-NYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hcCCCCCCCCcce-eeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 744 555554444332222111 1111111111010 0011111 11235577788899999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhc-ccccccccc-----------ccccccccccccCchhHHHHHHHHHHHHhhhc
Q 012732 255 PPENKTMKMASMISIFITTFFYLCCGC-FGYAAFGND-----------TPGNLLTGFGFYEPYWLIDLANACIVLHLVGG 322 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~-~gy~~fg~~-----------~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~s 322 (457)
+ |.+||++.-..--+.++|+..-+ +|.+.-.++ ..++....+.+..-..+..+.|..++++++++
T Consensus 264 ~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa 340 (541)
T COG0833 264 R---KSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSA 340 (541)
T ss_pred h---hhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHH
Confidence 6 89999999998888888873322 233322222 11222222222122346678888888887766
Q ss_pred ccccccchHHHHHHHHhhh-CCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC--hHHHHHHhhhh
Q 012732 323 YQIFSQPVFAFVERWFTRK-YPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY--FNQVLGVLGAL 399 (457)
Q Consensus 323 ~pl~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~v~~~~Ga~ 399 (457)
----++..-..+..+=.++ -|+ ..++.+....| ..-+.++.+..+++++.+..-.+ ++-++++.|..
T Consensus 341 ~NS~lYasSR~L~sLA~~g~APk--~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s 410 (541)
T COG0833 341 ANSGLYASSRMLYSLAKQGKAPK--IFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLS 410 (541)
T ss_pred hhccchHHHHHHHHHHhcCCCch--HHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHH
Confidence 4332233223332221111 111 00000001113 44455666666666666655222 56677777654
Q ss_pred hcchhhhhhhhHHHHhHhc
Q 012732 400 NFWPLAIYFPVEMYFVQKK 418 (457)
Q Consensus 400 ~~~~~~~ilP~l~~~~~~~ 418 (457)
. .+..+-=++-|++-||
T Consensus 411 ~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 411 G--FIAWGSICLSHIRFRR 427 (541)
T ss_pred H--HHHHHHHHHHHHHHHH
Confidence 4 4445555666666543
No 43
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.39 E-value=1.4e-10 Score=117.12 Aligned_cols=360 Identities=14% Similarity=0.145 Sum_probs=196.1
Q ss_pred chHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHH-HHHHHHHHhcccCCCCcCCcccccHHHHHHHHcC
Q 012732 23 GTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVT-YVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLG 101 (457)
Q Consensus 23 ~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 101 (457)
.++++++...++.++|+|++..| ..++.|.. .++..++.+.+. ......+.|..+. .+++| .....+++.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G----G~y~~~~~~~g 73 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG----GIYVWVSRAFG 73 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST----THHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC----eeeehhhhccc
Confidence 36889999999999999999999 77677765 555555655555 5777777776543 34444 55577899999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHH
Q 012732 102 KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 181 (457)
Q Consensus 102 k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~ 181 (457)
|+.+++..+...+.......++.....+.+...+... . .+.+ + ....+.+..++.......+..|..++++.
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~--~-~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 74 PFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPD-L----NPSP--W-PQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGG-G----TCSH--H-HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred ccchhcccceeEEEeeccccccccchhhhhhhccccc-c----cccc--c-hheeeeecccccceEeeechhhhhhhhhh
Confidence 9999999999988888888777777777765544210 0 0000 0 01111111111122222344555555555
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhccccc---ccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCcc
Q 012732 182 IAAIMSF-AYSFIGFGLGFAKVIENGRIKG---SIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPE 257 (457)
Q Consensus 182 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~ 257 (457)
......+ ...+++++..+.....+..... ..+..+ +..+ ..+.+++..+|+|.|.+......+|+||
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~G~e~~~~~~~E~k~---- 216 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP--SGWP---GFLAGFSVAFFAFSGFEAIASLAEENKN---- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC--SSSS---HHHHHHHHHGGGGTTTTHHHHGGGGSSS----
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCC--cccc---chhhHHHHHHhhcccccccccccccccc----
Confidence 5554444 2222222222222111110000 001111 1111 3568889999999999999999999663
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhcccccccccccc---cccc---ccc-cccCchhHHHHHHHHHHHHhhhcccccccch
Q 012732 258 NKTMKMASMISIFITTFFYLCCGCFGYAAFGNDTP---GNLL---TGF-GFYEPYWLIDLANACIVLHLVGGYQIFSQPV 330 (457)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~---~~il---~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 330 (457)
|+.+|++..+..++.++|......-....+++.. ++.. ..+ .....++...+..+...+..+.+........
T Consensus 217 -k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 295 (426)
T PF13520_consen 217 -KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGA 295 (426)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcch
Confidence 7899999999999999999887665555554321 1211 111 0001235555666666666666554444333
Q ss_pred HHHHHHHHhhh-CCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHH---HHcC--ChHHHHHHhhhhhcchh
Q 012732 331 FAFVERWFTRK-YPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVA---IIFP--YFNQVLGVLGALNFWPL 404 (457)
Q Consensus 331 ~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia---~~ip--~~~~v~~~~Ga~~~~~~ 404 (457)
.+.+...-.++ .|+ .+ .+.+.++.| . +... ...+++.++. .+.| +++.+.+.. ++ ...+
T Consensus 296 sR~l~~~a~d~~lP~-~~-~~~~k~~~P--------~-~a~~--~~~~i~~i~~~~~~~~~~~~~~~l~~~~-~~-~~~~ 360 (426)
T PF13520_consen 296 SRLLYAMARDGVLPK-WF-AKVNKFGTP--------Y-NAII--LVAVISSILLLLFLFIPQSSFDILVSLS-SV-GYLI 360 (426)
T ss_dssp HHHHHHHHHTTSSSG-GG-GTTSSSSSC--------H-HHHH--HHHHHHHHHHHHTTTSSSSHHHHHHHHH-HH-HTHH
T ss_pred hhcccccccccchhh-hh-hhccccCCc--------e-eeeh--hhhHHHHHHHHHHHhhhHHHHHHHHHHH-HH-HHHH
Confidence 33333332222 231 11 111112223 1 1111 1222221222 1234 345555543 33 3477
Q ss_pred hhhhhhHHHHhHhccCCc
Q 012732 405 AIYFPVEMYFVQKKIGAW 422 (457)
Q Consensus 405 ~~ilP~l~~~~~~~~~~~ 422 (457)
.++++.+.+++.+++++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~ 378 (426)
T PF13520_consen 361 SYILVILAVLFLRRKRPD 378 (426)
T ss_dssp HHHHHHHHHHHTHHHSCS
T ss_pred HHHHHHHHHHHHhhhcCC
Confidence 888888887777665443
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.33 E-value=1.1e-09 Score=111.91 Aligned_cols=247 Identities=17% Similarity=0.184 Sum_probs=156.6
Q ss_pred cccchHHH-HHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRS-CVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~-a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++ .....++.++|.|++.+|......+ ....+..++.++.....+..+.|..+. .++.| .+.+.+++
T Consensus 11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G----G~y~~~~~ 84 (466)
T COG0531 11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG----GAYAYAKR 84 (466)
T ss_pred CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC----Ceeeehhh
Confidence 56677777 8888899999999999999888765 222333455666666666777776553 44444 44556899
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhh---cCCCcCc
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS---QIPDFHN 175 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~---~~~~l~~ 175 (457)
.+||+.++++.+...+.......+.....+..+..+.+... ....+. +...+...+...+. -.+..+.
T Consensus 85 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~ln~~G~~~ 155 (466)
T COG0531 85 ALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--------LLSIGP-LLIILIALALIALLTLLNLRGIKA 155 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------hhcCCc-hHHHHHHHHHHHHHHHHHHhhHHH
Confidence 99999999999999998888888888888887777665310 000000 22222222222222 2233444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCC-hhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 176 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTAN-LADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 176 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
...+..+..+..+...++.. +......+....+. ..+.. ..........++....++|.|-+...+..+|+|||
T Consensus 156 ~~~~~~~~~~~~i~~~i~~~---i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp 230 (466)
T COG0531 156 SAKINSIITILKIIILLIFI---ILGLFAFGFSNGNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNP 230 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhCcccccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCc
Confidence 44444444444443322222 22222222111111 11111 11122357789999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012732 255 PPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 289 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 289 (457)
+ |+.+|++..+..++.++|+.....-....++
T Consensus 231 ~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 231 K---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 6 7899999999999999999888776666664
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.30 E-value=9.5e-09 Score=105.09 Aligned_cols=249 Identities=14% Similarity=-0.004 Sum_probs=140.8
Q ss_pred cccchHHHHHHHHHhhh-hccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAV-IGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~-iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+|+.+.++.+..-++.+ +|+|+.+.|- +.++.|- ..+...++.++.....+..+.|.... .|+.| .....++
T Consensus 12 ~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aG----G~Y~~~~ 85 (475)
T TIGR03428 12 HRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISG----AIYQWSR 85 (475)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCC----CHHHHHH
Confidence 78899999988888874 8999888765 4556666 46777788888888888888886654 34444 3345578
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcc--cccCCCCCccccCCccchHhHHH-HHHHhhcCCCcC
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNC--YHREGHNAPCAYGDTKHMLLFGA-VQVVMSQIPDFH 174 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~-v~~~l~~~~~l~ 174 (457)
+.+||..++++.+...+.......+........+..+.+... .++++...+ ......+.+...+ ++.-+.-.+..|
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~in~~g~k 164 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSP-SGAANAVLLGSVLLVLTTVINCIGVE 164 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCC-CchHHHHHHHHHHHHHHHHHHHhhhh
Confidence 899999999999988877665555444444444444322110 000000000 0000111111111 111111223344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 175 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI-AGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 175 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
..+++..+..+..+...+++++...... +.+..... +..++..+ .....+..+.....|+|.|.+....+.+|+||
T Consensus 165 ~~~~i~~~~~~~~i~~l~~iii~~~~~~--~~~~~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~kn 241 (475)
T TIGR03428 165 WMSRVNTIGVTCEIVGVLAVIGVLFTHA--QRGPGVVFDTSVTGASP-GYYGAFLVSGLMAAYVMVGFGSAGELSEETKN 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceeeecCCCCCCc-cHHHHHHHHHHHHHHHhcCcchHHHHHHHhcC
Confidence 5555554444433322222221112111 11110000 01110111 11234456677788999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGC 281 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~ 281 (457)
|+ |+.||++..+..+..++|...-+
T Consensus 242 P~---r~iPrai~~s~~i~~~~~~~~~~ 266 (475)
T TIGR03428 242 PR---RVAPRTILTALSVSALGGGLMIL 266 (475)
T ss_pred cc---hhhhHHHHHHHHHHHHHHHHHHH
Confidence 97 89999999999888765554333
No 46
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.22 E-value=9.8e-09 Score=104.98 Aligned_cols=247 Identities=14% Similarity=0.044 Sum_probs=120.8
Q ss_pred cchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHH-HHHHHHHhcccCCCCcCCcccccHHHHHHHHc
Q 012732 22 TGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTY-VSSFLLADCYRSPDPINGKRNRSYIDAVRLNL 100 (457)
Q Consensus 22 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 100 (457)
|.+.+.-++..+.++++.. .+|.+ ++.|.. .++..++.+++.. -.+....|.... .+++| ...+.+++.+
T Consensus 2 ~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~-~P~~G----G~y~~~~~a~ 72 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVSLR--GLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATA-WPEKG----GVFRWVGEAF 72 (474)
T ss_pred cccHHHHHHHHHHHHHHhh--cchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCC----CceeeHhhhc
Confidence 4566666666666555554 44655 678864 4455555555443 355566675544 33333 3345589999
Q ss_pred CCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHH-Hh--hcCCCcCchh
Q 012732 101 GKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQV-VM--SQIPDFHNME 177 (457)
Q Consensus 101 Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~-~l--~~~~~l~~l~ 177 (457)
|++.++...+...+.......+-+......+....+..... .. .....+......++++ .+ .-.+..|..+
T Consensus 73 G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~ 146 (474)
T TIGR03813 73 GARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD-----ES-LAGNKLYVLVSVLFVYWLATFIALRGVAAFT 146 (474)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC-----cc-cccccHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 99999998887776653322211112222222111110000 00 0111222222222211 11 2233444444
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccccCCCCChh-HHHHHHHHHHHHHHhhccCcceehhhhccccCCC
Q 012732 178 WLSVIAAIM-SFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLA-DKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPP 255 (457)
Q Consensus 178 ~~s~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~ 255 (457)
.++.+.... .+...++++++.+.....+++..... ..++..+. ........+ ..+.|+|.|.+......+|+|||+
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~-~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~ 224 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPL-RWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPD 224 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcc
Confidence 444332211 11111122222222222211111000 00000010 111122222 345789999999999999999996
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012732 256 PENKTMKMASMISIFITTFFYLCCGCFGYAAFG 288 (457)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (457)
|+.+|++..+..++.++|....+.-....+
T Consensus 225 ---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 225 ---KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred ---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999876554433333
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.22 E-value=1e-08 Score=105.19 Aligned_cols=242 Identities=9% Similarity=-0.017 Sum_probs=132.4
Q ss_pred cccchHHHHHHHHHhhhhc--cccch-hHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIG--SGVLS-LAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAV 96 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG--~GiL~-lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 96 (457)
+|+.+.++.+...+. .+| +|+.. .+.+.++.|....+...++.+++....+..+.|.... .|++| .....+
T Consensus 11 ~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~G----g~y~~~ 84 (482)
T TIGR00907 11 KREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSG----GQYFWS 84 (482)
T ss_pred ecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCc----cHHHHH
Confidence 678888888777777 444 56544 4567777888666778888999999999999987654 34444 344556
Q ss_pred HHHcC----CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHH--HHHhhcC
Q 012732 97 RLNLG----KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAV--QVVMSQI 170 (457)
Q Consensus 97 ~~~~G----k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v--~~~l~~~ 170 (457)
++.+| +..++++.+...+.....+.+.....++.+....... ++++. ...+......+..++ +.-+.-.
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~i~~~~~~~~~~in~ 159 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT--TPGRE---YIPTRWHIFGIMIGIHLIHALINS 159 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCC---ccccCchhhhhHHHHHHHHHHHHH
Confidence 66766 4556777777777777776666666677666554321 11100 000111111111111 1111112
Q ss_pred CCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc--ccccCCCCC-h-hHHHHHHHHHHHHHHhhccCcceeh
Q 012732 171 PDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGR-IKG--SIAGVPTAN-L-ADKLWLAFQALGDIAFAYPYSIILL 245 (457)
Q Consensus 171 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~--~~~~~~~~~-~-~~~~~~~~~~~~~~~faf~~~~~i~ 245 (457)
...|..+.+..+..+..+...+++.+..+. ..++. ... ...+..+.. . ...-+....++....|+|.|.+...
T Consensus 160 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~--~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~ 237 (482)
T TIGR00907 160 LPTKWLPRITSSAAYWSLLGFLTICITLLA--CKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTA 237 (482)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHhhhhhc--cCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhh
Confidence 223334444433332222111111111111 11110 000 011111000 0 0111245566677889999999999
Q ss_pred hhhccccCCCccchhhhHHHHHHHHHHHHHHH
Q 012732 246 EIQDTLKSPPPENKTMKMASMISIFITTFFYL 277 (457)
Q Consensus 246 ~i~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~ 277 (457)
...+|+|||+ |+.+|++..+..+..++|.
T Consensus 238 ~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~ 266 (482)
T TIGR00907 238 HMAEEIENPE---VVGPRAIIGAVAIGIVTGF 266 (482)
T ss_pred HHHHhcCChh---hhcCHHHHHHHHHHHHHHH
Confidence 9999999996 8999999998877665433
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.19 E-value=3.4e-08 Score=101.53 Aligned_cols=248 Identities=10% Similarity=0.087 Sum_probs=130.2
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHH-HHHHHHHhcccCCCCc-CCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTY-VSSFLLADCYRSPDPI-NGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~-~~~~~~~y~~l~~ 97 (457)
+|+.+.++.++..+++++|.+ .+|.++++.|.. +++..++.+++.. .....+.|.... .|+ +| .-....+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~-~P~~aG----G~Y~w~~ 77 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSA-FKDEKG----GIYSWMN 77 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCC----cHHHHHH
Confidence 467999999999999999976 568888888875 5666666665543 455567776544 332 33 3345688
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHH-HHhcccccCCCCCccccCCccchHhHHHH---HHHhhcCCCc
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAI-QKSNCYHREGHNAPCAYGDTKHMLLFGAV---QVVMSQIPDF 173 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~v---~~~l~~~~~l 173 (457)
+++||+.+++..+...........+............ +.. +..+..+.. ..+......+..++ +.-+.-.+.+
T Consensus 78 ~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 78 KSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQTWHFL-GLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhhhhhhh-cccchHHHHHHHHHHHHHHHHHHccch
Confidence 9999998887665543333222211111000001111 110 000000000 01111111111111 1112224555
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccc--cccccC-CCCCh-hHHHHHHHHHHHHHHhhccCcceehhhh
Q 012732 174 HNMEWLSVIAAIMSFAYSFIGFGL-GFAKVIENGRIK--GSIAGV-PTANL-ADKLWLAFQALGDIAFAYPYSIILLEIQ 248 (457)
Q Consensus 174 ~~l~~~s~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~--~~~~~~-~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~ 248 (457)
+..+.++.++.+..+...++.++. .......+++.. ....+. +..++ .......+.++....|+|.|.+......
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 555555554443332211111111 111111111110 000011 00011 0111356677888999999999999999
Q ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHhhhc
Q 012732 249 DTLKSPPPENKTMKMASMISIFITTFFYLCCGC 281 (457)
Q Consensus 249 ~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~ 281 (457)
+|+|||+ |+.+|++..+...+.++|.....
T Consensus 235 ~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~ 264 (496)
T PRK15238 235 DKTENPE---KNFPKGIIIAAIVISIGYSLAIF 264 (496)
T ss_pred HhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence 9999996 89999999999999999986543
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.14 E-value=2.2e-08 Score=102.97 Aligned_cols=239 Identities=13% Similarity=0.019 Sum_probs=121.5
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHH--HHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVT--YVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~--~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+++.+.++.++..+..+. ++-.+| .+++.|+- .+...+++.+. .-.+....|......+++| .....++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~--~i~~~i~~~l~~~lp~al~~AELas~~p~~~G----G~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGFH--LVFFLLLGGILWFIPVALCAAEMATVDGWEEG----GIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC----Ceeeehh
Confidence 467888888887777665 446888 57788853 34444444333 3466667776543221223 3334589
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
+++|++.+++..+..++.......+........+...... ++ . ....++..+..++++.+....|++..+
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~----~~-----~-~~~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF----PA-----L-NEDPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ch-----h-ccCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9999999888766666654422222221111122222211 00 0 011122222222222222234444555
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccC
Q 012732 178 WLSVIAAIMS----FAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKS 253 (457)
Q Consensus 178 ~~s~~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~ 253 (457)
..+.+..++. +...++++++.... ...+.......+.++..+..........+...+|+|.|.+......+|+||
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~-~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~kn 222 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAY-FHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELEN 222 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccC
Confidence 4444433221 11111222222222 122211100000000111101112334555568999999999999999999
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGC 281 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~ 281 (457)
|+ |+++|++..+..++.++|....+
T Consensus 223 P~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 223 PG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred Cc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 96 89999999999988888876443
No 50
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.05 E-value=2e-09 Score=92.13 Aligned_cols=222 Identities=13% Similarity=0.232 Sum_probs=138.6
Q ss_pred hHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhccc-------------CCC--------
Q 012732 24 TLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYR-------------SPD-------- 82 (457)
Q Consensus 24 s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~-------------~~~-------- 82 (457)
|..-.....+|-++|+|.|++|.+|+.+||..++.++.+.+++++-+..+.+|++. +.+
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 44445677889999999999999999999999999999999999999999888540 000
Q ss_pred ------------------C-----cCC-------cccccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 012732 83 ------------------P-----ING-------KRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMR 132 (457)
Q Consensus 83 ------------------~-----~~~-------~~~~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 132 (457)
+ +.| ++..+.+|++...|.|.+-.+.-++++++++|-...|....-.+..
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 0 001 1234677888999999999999999999999999988887766666
Q ss_pred HHHHh-----ccc-ccCC---CCCccc---c----CCccchHhHHHHH-HHhhcCCCcCchhHHHHHHHHHHHHHHHHHH
Q 012732 133 AIQKS-----NCY-HREG---HNAPCA---Y----GDTKHMLLFGAVQ-VVMSQIPDFHNMEWLSVIAAIMSFAYSFIGF 195 (457)
Q Consensus 133 ~~~~~-----~~~-~~~~---~~~~~~---~----~~~~~~~i~~~v~-~~l~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 195 (457)
++.-. -|. +.+. +...|. . -.+++++++.+++ +|+.+ -.+.+-++++++...+.+.-.....
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccchh
Confidence 55321 111 1110 011121 0 1233444444433 35543 4567777888777766663211111
Q ss_pred HHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012732 196 GLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
.+.-.+.-+ ++. +...+...+-++-..++..+|+|.+|.+.|.....++..
T Consensus 252 ~l~tmqaee----daa----~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 252 SLATMQAEE----DAA----AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhhhhcc----ccc----ccCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 111101111 111 111111112233367888999999999999988887743
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.05 E-value=1.2e-08 Score=98.70 Aligned_cols=283 Identities=14% Similarity=0.089 Sum_probs=173.3
Q ss_pred cchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcC
Q 012732 22 TGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLG 101 (457)
Q Consensus 22 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 101 (457)
|.|..|....++.+.+|+|++.+|...++.+- .|.+..++.++......++..+..++.+. .+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~------~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG------KTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhC
Confidence 46889999999999999999999999875431 34444445555555555555554433222 399999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHH
Q 012732 102 KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 181 (457)
Q Consensus 102 k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~ 181 (457)
|+.+.+..+...++.+......+...++.+....-. .+..+.+.....++......+.++.+.+.+.
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp-------------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~ 140 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP-------------ETPIWVIILLFLLVAAYAARKGIEVIARVAE 140 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999888888888888877765421 1222333333333333334566777776544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccchhh
Q 012732 182 IAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTM 261 (457)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~ 261 (457)
+.....+...+++ .....++ .+.++..+.. ..+..+.+.+.....+.|.+...+.-+....|+| |+.
T Consensus 141 ~~~~~~~i~~~~i----~~~~~~~----~~~~~l~P~~-~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~~~ 207 (320)
T PF03845_consen 141 ILFPIFLILLLLI----LLLSIPN----IDWDNLLPVL-ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----KKL 207 (320)
T ss_pred HHHHHHHHHHHHH----HHHhccc----CCHHHeeCcc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----hHH
Confidence 4444333211111 1111111 1112221111 1224466777777788888888888888899987 788
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccccccccccccc-------ccccccCc---hhHHHHHHHHHHHHhhhcccccccchH
Q 012732 262 KMASMISIFITTFFYLCCGCFGYAAFGNDTPGNLL-------TGFGFYEP---YWLIDLANACIVLHLVGGYQIFSQPVF 331 (457)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il-------~~~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~p~~ 331 (457)
+|....+..+..++|...-......||.+..++.. ...+ -+ +....+...........+.-+..+-..
T Consensus 208 ~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~--i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~ 285 (320)
T PF03845_consen 208 KKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIE--IGDFIERLDSIFILIWIIGIFIKISLYLYAAS 285 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888777777788865322211 1110 01 123334444445555555555555555
Q ss_pred HHHHHHHh
Q 012732 332 AFVERWFT 339 (457)
Q Consensus 332 ~~~~~~~~ 339 (457)
+.+.+.++
T Consensus 286 ~~~~~~f~ 293 (320)
T PF03845_consen 286 EGLSQLFK 293 (320)
T ss_pred HHHHHHhC
Confidence 55666554
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.91 E-value=8.9e-09 Score=105.49 Aligned_cols=242 Identities=17% Similarity=0.186 Sum_probs=148.8
Q ss_pred HHhhhhccccch-hHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhhHH
Q 012732 32 IITAVIGSGVLS-LAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGL 110 (457)
Q Consensus 32 li~~~iG~GiL~-lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~~~ 110 (457)
.+..++|+|++. .+.+..+.|.....+..++.++.....+.-+.|..++.. +.| .+...+++.+|+..+..+.+
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeH
Confidence 366789999554 688899999977788899999999999999998766533 434 66677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH--HHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHH
Q 012732 111 LQNLTFYGTAVAYVITTSTSMRAI--QKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSF 188 (457)
Q Consensus 111 ~~~~~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~ 188 (457)
...+.............+..++.+ .+.. .....+.. .+..++.+++..+. ....|....+........+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGL-------PSTWVWGI-LIAIIFILLITLLN-LFGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccc-------cccccccc-hhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhh
Confidence 988887777777776666655554 2110 00000000 11222222222222 2233333333322222222
Q ss_pred HHHHHHHHHH-HHHHHHhccccc-----ccc---cCCCC---ChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCc
Q 012732 189 AYSFIGFGLG-FAKVIENGRIKG-----SIA---GVPTA---NLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPP 256 (457)
Q Consensus 189 ~~~~i~~~~~-~~~~~~~~~~~~-----~~~---~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~ 256 (457)
...+..++.. +......++.+. +.. ..++. .....+.+++.++...+++|.|.+......+|.|||+
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~- 230 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR- 230 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch-
Confidence 1111111111 111111111111 000 11100 0112355788999999999999999999999999996
Q ss_pred cchhhhHHHHHHHHHHHHHHHhhhcccccccccc
Q 012732 257 ENKTMKMASMISIFITTFFYLCCGCFGYAAFGND 290 (457)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (457)
|+++|++..+.....++|+......-...+.+
T Consensus 231 --k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 231 --KTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred --hhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 89999999999999999997777655555544
No 53
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.89 E-value=1.8e-08 Score=102.82 Aligned_cols=303 Identities=13% Similarity=0.031 Sum_probs=190.6
Q ss_pred cccchHHHHHHHHHhhhhccccch-hHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcC-CcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLS-LAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPIN-GKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~-lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~-~~~~~~y~~l~~ 97 (457)
+|+.+.++-.+.-+++++|+|++- ...+.++.|-..-++..++.++..+.++..+.|..-+ -|+. | ++...++
T Consensus 29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~~aG----s~~~ya~ 103 (554)
T KOG1286|consen 29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPVSAG----SFYTYAY 103 (554)
T ss_pred hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-cccccc----cceeeee
Confidence 889999999999999999999765 5888999998888888999999999999999996544 2332 3 3444577
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccch--HhHHHHHHHhhcCCCcCc
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHM--LLFGAVQVVMSQIPDFHN 175 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~i~~~v~~~l~~~~~l~~ 175 (457)
+..|+..++.+.+-..+.....+.+.....+.+++.+. . ..+.... ....+...|. ....++++.+...+-..+
T Consensus 104 ~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~-~-~~~~~~~--~~~~~~~~~~~~fla~~v~in~~gv~~~ge 179 (554)
T KOG1286|consen 104 RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWT-G-ASLIGIL--VDTVNPGGWIPDFLAFILIINLFGVLAYGE 179 (554)
T ss_pred eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-c-ccccccc--ccCCCCCccHHHHHHHHHHHHHHHHhhccc
Confidence 88999999999999999999999999999999999987 1 0000000 0001112222 222333334444555566
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC---CC--ChhHHHHHHHHHHHHHHhhccCcceehhhhcc
Q 012732 176 MEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVP---TA--NLADKLWLAFQALGDIAFAYPYSIILLEIQDT 250 (457)
Q Consensus 176 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 250 (457)
.+....+..+.+..-.++..++....+..+++. +..+.+ ++ -....+.++++++....|+|.|-..+-...+|
T Consensus 180 ~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~--~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 180 VEFSLAFNKILTAVGFIILAIVIIAGGGPADVK--NWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred eeehHHHHHHHHHHHHHHhheeeecCCCcCCcC--CCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 665555555444321111111111111111110 111111 00 11112557789999999999999999999999
Q ss_pred ccCCCccchhhhHHHHHHHHHHHHHHHhhhccccccccccc---ccccccccccc---Cc---hhHHHHHHHHHHHHhhh
Q 012732 251 LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT---PGNLLTGFGFY---EP---YWLIDLANACIVLHLVG 321 (457)
Q Consensus 251 m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~---~~~il~~~~~~---~~---~~~~~~~~~~~~i~~~~ 321 (457)
-|||+ |..|+++..+...+.++|....+.--+.-..+. .++....-|.. +. ..+..+++++.++.+.+
T Consensus 258 ~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 258 AKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred ccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 99996 999999999999999999977765333322221 11111111100 11 12334778888777777
Q ss_pred cccccccchHHHHHH
Q 012732 322 GYQIFSQPVFAFVER 336 (457)
Q Consensus 322 s~pl~~~p~~~~~~~ 336 (457)
+----+++.-..+..
T Consensus 335 ~~n~~~y~~sR~l~a 349 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYA 349 (554)
T ss_pred HHHHHhHHhHHHHHH
Confidence 755545554444333
No 54
>PRK11375 allantoin permease; Provisional
Probab=98.38 E-value=0.00037 Score=71.15 Aligned_cols=183 Identities=9% Similarity=0.045 Sum_probs=95.1
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHH-HHHHHHHHHHHHHhhhhHHHHHHhcccccCC--CCCc-cccCCccc--hHhHHHH
Q 012732 90 RSYIDAVRLNLGKTQTWFCGLLQN-LTFYGTAVAYVITTSTSMRAIQKSNCYHREG--HNAP-CAYGDTKH--MLLFGAV 163 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~--~~~~-~~~~~~~~--~~i~~~v 163 (457)
.++.-+.|..||++|..+..+... +..++--.......++.+..++.......++ ++.+ ...+...+ .+++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 489999999999999888888874 4666766666777888888766543211110 0000 01111112 2234444
Q ss_pred HHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCC--CCChhHHHHHHHHHHHHHHhhcc-C
Q 012732 164 QVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVP--TANLADKLWLAFQALGDIAFAYP-Y 240 (457)
Q Consensus 164 ~~~l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~faf~-~ 240 (457)
..++. ....+.++++..++............ ++...+.+ .......-+ ........+.+..++...+=++. .
T Consensus 169 ~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~---~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~ 243 (484)
T PRK11375 169 NVGIG-FGGGKVLNKFTAILNPCIYIVFGGMA---IWAISLVG-IGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAP 243 (484)
T ss_pred HHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHcC-CchhhccCcccccCCcchHHHHHHHHHHHHHHHHHH
Confidence 45555 35567777777777665543222221 22111211 110100000 00111123445555544444454 4
Q ss_pred cceehhhhccccCCCccchhhhHHHHHHHHHHHHHHHhhhc
Q 012732 241 SIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGC 281 (457)
Q Consensus 241 ~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~ 281 (457)
-.+.|...+..|++ |+-.+....+..+...+...+|+
T Consensus 244 ~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~ 280 (484)
T PRK11375 244 AVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASV 280 (484)
T ss_pred HccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHH
Confidence 55899999999987 55555555565555554433343
No 55
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.36 E-value=0.00022 Score=72.24 Aligned_cols=193 Identities=13% Similarity=0.042 Sum_probs=107.1
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhc
Q 012732 90 RSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 169 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~ 169 (457)
.++.-+.|..||++|..+..++..+...|-........++.+.++++....+..+.............+++.++.+++..
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 37778899999999999999999999999999999999999988877542210000000000011122344444445444
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHH-hhccCcceehhhh
Q 012732 170 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIA-FAYPYSIILLEIQ 248 (457)
Q Consensus 170 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~i~~i~ 248 (457)
....+-.+.....+..... ++++...+...+.++.....+..+...+....+.++.+++..+ +.-..-.+.++..
T Consensus 156 ~~g~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~Dys 231 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPF----AAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFT 231 (442)
T ss_pred cCHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhh
Confidence 4444444455555554333 1112222222222211100001110112233445555555533 2234556899999
Q ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHhhhcccccc----cccc
Q 012732 249 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAA----FGND 290 (457)
Q Consensus 249 ~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~----fg~~ 290 (457)
+.+|++ |+-.+....++.........+|+++-.. +|+.
T Consensus 232 Ry~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 232 RFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred hhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999987 4555556677777777777777766654 6654
No 56
>PRK12488 acetate permease; Provisional
Probab=98.32 E-value=0.0021 Score=66.86 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=99.1
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHH-HHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYV-SSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~-s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
.|+.+++...+.+..+.++++ .++.|-.....|+-. ....+. ..+.+. ...++.+-.++.. .+|.+|.-+
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~~~~g-~~~g~~~~~~~~a~~lr~~g------~~T~~d~l~ 137 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LLYALG-VLAGWPIILFLIAERLRNLG------KYTFADVVS 137 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HHHHHH-HHHHHHHHHHHHHHHHHHCC------CcchHHHHH
Confidence 688999999999999988887 678998877788742 222111 122221 2233444333222 259999988
Q ss_pred HHcC-CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCch
Q 012732 98 LNLG-KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 176 (457)
Q Consensus 98 ~~~G-k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l 176 (457)
+=|| |+.+.+..+...+..+....+.+...+..++.+++ .+...-+++.++++.......-++..
T Consensus 138 ~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 138 YRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred HHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhHH
Confidence 8887 56888888887777777777788888887777653 12223345555666666677888888
Q ss_pred hHHHHHHHHHHHHH
Q 012732 177 EWLSVIAAIMSFAY 190 (457)
Q Consensus 177 ~~~s~~~~~~~~~~ 190 (457)
.+...+..+.++..
T Consensus 204 ~~td~iQ~~im~~~ 217 (549)
T PRK12488 204 TWVQIIKAVLLLSG 217 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888877665543
No 57
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.31 E-value=9.9e-06 Score=81.25 Aligned_cols=149 Identities=9% Similarity=0.138 Sum_probs=90.8
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+++...+.++.+.+|++ +++.|....+.|+.. ....+...+.......++.+-.++. + ..|.+|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~----~--~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRS----G--AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHT----T----SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhccc----c--hhhhhhhhhh
Confidence 367888899999999888876 778899888889864 3333444444444555555554422 2 3599999999
Q ss_pred HcCCcc--hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCch
Q 012732 99 NLGKTQ--TWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 176 (457)
Q Consensus 99 ~~Gk~~--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l 176 (457)
-||++. +.+..+...+.........+...+..++.+++ .+....+++..+++.......-++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999988 66656656666667777777777777776653 22233445556666667777778888
Q ss_pred hHHHHHHHHHHHH
Q 012732 177 EWLSVIAAIMSFA 189 (457)
Q Consensus 177 ~~~s~~~~~~~~~ 189 (457)
.+...+..++.+.
T Consensus 144 ~~td~iQ~~i~~~ 156 (406)
T PF00474_consen 144 AWTDFIQGVIMII 156 (406)
T ss_dssp -SHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 8777777665543
No 58
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.31 E-value=0.00038 Score=65.15 Aligned_cols=105 Identities=12% Similarity=0.147 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhhhccccchhHHH---HHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcC
Q 012732 25 LRSCVAHIITAVIGSGVLSLAWS---TAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLG 101 (457)
Q Consensus 25 ~~~a~~~li~~~iG~GiL~lP~a---f~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 101 (457)
...-.+-.+.+++|+|.=+==.. |.+-|+. |..-.++++++-..++....+..++-+. .+|+|.-++.+|
T Consensus 5 ~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a------~~y~~~~~~v~~ 77 (349)
T COG3949 5 FMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA------TSYREILKYVSG 77 (349)
T ss_pred HHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHhh
Confidence 44556777889999998774333 4466776 6667777777777788777776544332 499999999999
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012732 102 KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQK 136 (457)
Q Consensus 102 k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 136 (457)
|+...+.|..+.+..+++++.-+...|..+.+-++
T Consensus 78 ~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~ 112 (349)
T COG3949 78 PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG 112 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC
Confidence 99999999999999999999888888877777653
No 59
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.28 E-value=0.0018 Score=66.44 Aligned_cols=150 Identities=12% Similarity=0.097 Sum_probs=90.8
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHH--HHHHH-HHHHHHHHHHhcccCCCCcCCcccccHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASL--LCFAI-VTYVSSFLLADCYRSPDPINGKRNRSYIDA 95 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l--~~~~~-~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 95 (457)
.|+.+++...+.+..+.+|++ .++.|-...+.|+....... ..... ...+-+..+.+-.++.+ ..|.+|+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e~ 113 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN------AVTLNDM 113 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHHHH
Confidence 678888999999988888775 77788777677764211111 01111 11112222222222221 3599999
Q ss_pred HHHHcCCc-chhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcC
Q 012732 96 VRLNLGKT-QTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFH 174 (457)
Q Consensus 96 ~~~~~Gk~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~ 174 (457)
-++-||++ .+.+..+...+..+....+.+...+..++.+++. +...-+++..+++........++
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GGl~ 179 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI--------------SYETGLLIFGITVALYTAFGGFR 179 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHHhccHH
Confidence 99999965 4556666666666666676777777777776541 22233345555556667777788
Q ss_pred chhHHHHHHHHHHHH
Q 012732 175 NMEWLSVIAAIMSFA 189 (457)
Q Consensus 175 ~l~~~s~~~~~~~~~ 189 (457)
...+.-.+..+..+.
T Consensus 180 av~~TD~iQ~~i~~~ 194 (483)
T PRK09442 180 AVVLTDALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHHHHHHH
Confidence 887777777665543
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.24 E-value=0.00042 Score=69.50 Aligned_cols=148 Identities=14% Similarity=0.165 Sum_probs=98.3
Q ss_pred ccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 21 RTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
|+.+++...+.+..+.+|++ .++.|....+.|+. +....+...........+..+..++. + ..|.+|.-++-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN----G--AYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc----C--CCchhHHHHHH
Confidence 67788888888888888876 77788887777864 23222223333334444555543321 1 35999999999
Q ss_pred cCC-cchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 100 LGK-TQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 100 ~Gk-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
||+ ..+.+..+...+..+....+.+...+..++.+.+. +...-+++..+++........++...+
T Consensus 76 yg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi--------------~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 76 FGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGL--------------DLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------hHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 998 46677777777888888888888888888887642 112333445555555666777888888
Q ss_pred HHHHHHHHHHH
Q 012732 179 LSVIAAIMSFA 189 (457)
Q Consensus 179 ~s~~~~~~~~~ 189 (457)
.-.+..++++.
T Consensus 142 Td~iQ~~i~~~ 152 (407)
T TIGR00813 142 TDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHH
Confidence 87777666543
No 61
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.19 E-value=0.0029 Score=64.79 Aligned_cols=149 Identities=11% Similarity=0.114 Sum_probs=94.9
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHH----HHhcccCCCCcCCcccccHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFL----LADCYRSPDPINGKRNRSYID 94 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~----l~~~~~~~~~~~~~~~~~y~~ 94 (457)
.|+.+++...+.+..+.+|++ .++.|-...+.|+........ .....+.+... +.+..++. | ..|.+|
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~--~~T~~e 111 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMI-QVPTGYFVLGVLGKKFAIISRKY----N--AITIND 111 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHc----C--CccHHH
Confidence 788999999999999999987 667888777778642111110 00111111112 22222221 2 359999
Q ss_pred HHHHHcCCc-chhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCc
Q 012732 95 AVRLNLGKT-QTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 173 (457)
Q Consensus 95 l~~~~~Gk~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l 173 (457)
.-++-||++ .+++..+...+..++...+.+...+..++++++. +...-+++..+++........+
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi--------------~~~~~iii~~~iv~iYt~~GG~ 177 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL--------------SYLTALFIFSSSVLIYTTFGGF 177 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhH
Confidence 999999965 4677788777777777777788888888877642 2123334445555666667777
Q ss_pred CchhHHHHHHHHHHHH
Q 012732 174 HNMEWLSVIAAIMSFA 189 (457)
Q Consensus 174 ~~l~~~s~~~~~~~~~ 189 (457)
+...+...+..+..+.
T Consensus 178 ~av~~td~iQ~~v~~~ 193 (471)
T TIGR02119 178 RAVALTDAIQGIVMFT 193 (471)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777655543
No 62
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.18 E-value=0.0028 Score=64.99 Aligned_cols=153 Identities=11% Similarity=0.070 Sum_probs=99.8
Q ss_pred cccchHHHHHHHHHhhhhc-cccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIG-SGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG-~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+.+-..+....+..+ .-.++.|-...+.|+....+..... +.......++.+-.++...+.| ..|.+|.-++
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~-~~~~~~~~~~~~rl~~~~~~~~--~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLL-IGAFLLWLLFAPRLRRLAKARG--ATTIPDFLEA 113 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccC--CccHHHHHHH
Confidence 5666666777777777777 7789999999999986533333321 2333333333322211121222 3599999999
Q ss_pred HcC-CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012732 99 NLG-KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~G-k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
-|| |+.+.+..+...+..+.-+.+.+...+..++..++ . +...-.++...++......-.+++..
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i-------------~~~~~~~~~~~~v~~Yt~~gG~~av~ 179 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I-------------SYVTGILIGALIVALYTFLGGLRAVV 179 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C-------------CHHHHHHHHHHHHHHHHHHcChhHHH
Confidence 999 88899999999999999999999999998855543 1 11122233445555556667777777
Q ss_pred HHHHHHHHHHHH
Q 012732 178 WLSVIAAIMSFA 189 (457)
Q Consensus 178 ~~s~~~~~~~~~ 189 (457)
+...+....+..
T Consensus 180 ~Td~iqg~im~i 191 (493)
T COG0591 180 WTDFIQGLIMLI 191 (493)
T ss_pred HHHHHHHHHHHH
Confidence 777766655543
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.16 E-value=0.0065 Score=63.30 Aligned_cols=148 Identities=14% Similarity=0.145 Sum_probs=92.5
Q ss_pred cccchHHHHHHHHHhhhhcc-ccchhHHHHHhhCcchHHHHHHHHHHHHH-HHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGS-GVLSLAWSTAQLGWIAGPASLLCFAIVTY-VSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~-GiL~lP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
.|+.+++...+.+..+.+++ ..++.|-...+.|+- +....+. ..+.+ ....++.+-.++. + .+|.+|.-+
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~g-~~~~~~i~~~~~a~~lrr~----g--~~T~~d~l~ 137 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSLG-FLVGWPIILFLIAERLRNL----G--RYTFADVAS 137 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHH-HHHHHHHHHHHHHHHHHHc----C--CccHHHHHH
Confidence 67788888888888887775 478899877777874 2222211 11122 2234444433332 2 269999988
Q ss_pred HHcC-CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCch
Q 012732 98 LNLG-KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 176 (457)
Q Consensus 98 ~~~G-k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l 176 (457)
+=|| |..+.+..+...+..+......+...+..++.+++. +...-+++..+++.......-++..
T Consensus 138 ~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi--------------~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T TIGR02711 138 YRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL--------------NYHVAVVLVGILMVMYVLFGGMLAT 203 (549)
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 8887 556777777666666666667777777777776541 1122245555556666667778887
Q ss_pred hHHHHHHHHHHHH
Q 012732 177 EWLSVIAAIMSFA 189 (457)
Q Consensus 177 ~~~s~~~~~~~~~ 189 (457)
.+...+..+.++.
T Consensus 204 ~~td~iQ~~im~~ 216 (549)
T TIGR02711 204 TWVQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHHHH
Confidence 8888777766543
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.16 E-value=0.0027 Score=63.05 Aligned_cols=176 Identities=12% Similarity=0.161 Sum_probs=103.3
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhc
Q 012732 90 RSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 169 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~ 169 (457)
.++.-+.|..||++|..+..+...+...|--.......++.+..+.+..... .+...+..+..++..+.+.
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---------~~~~~~~~i~~~l~~~~~~ 128 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---------ESPMLWILIVGILVTLWLL 128 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHH
Confidence 4888999999999999999999999999988888889999999988642111 0112233444444444443
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHH-hhccCcceehhhh
Q 012732 170 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIA-FAYPYSIILLEIQ 248 (457)
Q Consensus 170 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~i~~i~ 248 (457)
...+.++++..++..+.....+... . ....+.+.. .....+ .+ ..+. .+++... +.-......++..
T Consensus 129 -~G~~~i~~~~~~~~~~~~i~~~~~~---~-~~~~~~~~~-~~~~~~--~~-~s~~---~~~~~~~~~~~swa~~~~Dys 196 (386)
T TIGR02358 129 -SGPLAFVWLNNWSVWLLLIATLWLL---V-VVFSKADLS-ELWNRA--GD-MSFA---VAVELVIAMPLSWLPLIADYT 196 (386)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHhccchh-hhcCCC--CC-ccHH---HHHHHHHHHHHHHHHHccchh
Confidence 4467777777777665543221111 1 111111111 111111 11 1111 2222211 1012233478999
Q ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHhhhcccccccccc
Q 012732 249 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND 290 (457)
Q Consensus 249 ~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (457)
+..|+| |+.......+..+...+-..+|.....+.++.
T Consensus 197 Ry~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 197 RFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred hhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 998876 77777777788888888888887666655543
No 65
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.13 E-value=0.00089 Score=66.95 Aligned_cols=63 Identities=11% Similarity=-0.057 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhccCcceehhhhccccCCCccchhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012732 224 LWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 289 (457)
Q Consensus 224 ~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 289 (457)
-|.+.-++-.-.+.+.|-..-..+.+|-||++ |+-+|.+..+..+..++=..+-+.-..+-++
T Consensus 251 G~afil~f~~~~wt~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 251 GWAFILGFFNPAWTMSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred hHHHHHhhccceeEEeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35666677888899999999999999999997 8899998888887776654444444445554
No 66
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.97 E-value=0.0036 Score=61.51 Aligned_cols=260 Identities=13% Similarity=0.137 Sum_probs=118.2
Q ss_pred HHHHhhhhccccchhHHHHH-hh--CcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchh
Q 012732 30 AHIITAVIGSGVLSLAWSTA-QL--GWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTW 106 (457)
Q Consensus 30 ~~li~~~iG~GiL~lP~af~-~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~ 106 (457)
+.+....+|+|.|-.|-... ++ .|..+.+.+++.++..-..+.. +. ++.| -+|.++.++. ||+.+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av----~~~g---G~~~~l~~~~-g~~f~~ 70 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---AL----ALVG---GGYDSLSARI-GKVFGI 70 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---ee----eecC---CCHHHHHHHh-ChHHHH
Confidence 34667789999999987764 34 3455666666666655554444 11 1111 1777777665 677666
Q ss_pred hhHHHHHHHHH-------HHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012732 107 FCGLLQNLTFY-------GTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 107 ~~~~~~~~~~~-------g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
+..+.+.+..- ...++|-.. +..+++. + .. ......+.+++..+.+.+++ +.-+..
T Consensus 71 lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~----~---~~--~~~l~i~siiff~i~~~l~~----~~~k~~ 133 (378)
T TIGR00796 71 LFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHS----P---TS--LLALFIFSLIFFAVVLLLSL----NPSKLI 133 (378)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCc----c---cc--hHHHHHHHHHHHHHHHHHHc----CcccHH
Confidence 65555443221 223333332 2222211 0 00 01112233344444444443 344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccCCCCCh-hHHHH---HHHHHHHHHHhhccCcceehhhhc-cccC
Q 012732 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI-AGVPTANL-ADKLW---LAFQALGDIAFAYPYSIILLEIQD-TLKS 253 (457)
Q Consensus 180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~---~~~~~~~~~~faf~~~~~i~~i~~-~m~~ 253 (457)
..++.+++-...+.+..+.+.......+..... ....+-++ ..... +.+.+++-+.|+ ...+-.+.+ |+||
T Consensus 134 ~~iGk~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg---~iiv~~i~~~g~~~ 210 (378)
T TIGR00796 134 DRVGKFLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFG---IIVVNAIRSRGVTK 210 (378)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhCCCC
Confidence 666665554333333333333222211111101 11100011 11122 233344444444 444555555 8988
Q ss_pred CCccchhhhHHHHHHH---HHHHHHHHhhhcccccccc---cc-cccccccccccc-CchhHHHHHHHHHHHHhhhcc
Q 012732 254 PPPENKTMKMASMISI---FITTFFYLCCGCFGYAAFG---ND-TPGNLLTGFGFY-EPYWLIDLANACIVLHLVGGY 323 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~---~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~~-~~~~~~~~~~~~~~i~~~~s~ 323 (457)
|+ |..++.+..+. .....+|.-.+.+|...-+ +. ..+.++.+..+. -.++...+..+.+.++++++-
T Consensus 211 ~~---~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~ 285 (378)
T TIGR00796 211 PK---KITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTA 285 (378)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 85 55555555444 4445567777766655432 11 122333322110 123345555666666666653
No 67
>PRK09395 actP acetate permease; Provisional
Probab=97.96 E-value=0.031 Score=58.36 Aligned_cols=149 Identities=13% Similarity=0.118 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+++...+.+..+.++++ .++.|-...+.|+.. ....+...+-......++.+-.++. + .+|++|.-++
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~----g--~~T~~d~l~~ 140 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNL----G--KYTFADVASY 140 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhC----C--CccHHHHHHH
Confidence 678888888888888888876 778888777788743 2222211111122233344433332 2 2699999999
Q ss_pred HcCC-cchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012732 99 NLGK-TQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~Gk-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
=||+ +.+.+..+...+..+....+.+...+..++.+++ .+...-+++..+++.......-++...
T Consensus 141 Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av~ 206 (551)
T PRK09395 141 RLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLATT 206 (551)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence 8984 5777777776666666666677777777776653 222233455555666666677777777
Q ss_pred HHHHHHHHHHHH
Q 012732 178 WLSVIAAIMSFA 189 (457)
Q Consensus 178 ~~s~~~~~~~~~ 189 (457)
+...+..+.++.
T Consensus 207 ~TD~iQ~iim~~ 218 (551)
T PRK09395 207 WVQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHHH
Confidence 777777655443
No 68
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.82 E-value=0.062 Score=56.13 Aligned_cols=148 Identities=11% Similarity=0.039 Sum_probs=93.8
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+++...+.+..+.++++ .++.|-...+.|+.. ..............+.++.+-.++.+ ..|.+|.-++
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr~~------~~T~~e~l~~ 103 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRKFG------KYTVPDFIGD 103 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHCC------CccHHHHHHH
Confidence 688999999999999988765 778887777777642 11111111111223345555444322 3588898888
Q ss_pred HcCCc-chhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012732 99 NLGKT-QTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~Gk~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
=||++ .+++..+...+..+......+...+..++.+.+. +...-+++..+++.......-++...
T Consensus 104 Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi--------------~~~~~iii~~~i~~iYt~~GG~~aV~ 169 (552)
T TIGR03648 104 RYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV--------------DFETGVFIGMAIVFFYAVLGGMKGVT 169 (552)
T ss_pred HhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------CHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88855 5777777776667776777777777777776541 22233445555566666667777777
Q ss_pred HHHHHHHHHHH
Q 012732 178 WLSVIAAIMSF 188 (457)
Q Consensus 178 ~~s~~~~~~~~ 188 (457)
+.-.+..+.++
T Consensus 170 ~TD~iQ~iim~ 180 (552)
T TIGR03648 170 WTQVAQYIVLI 180 (552)
T ss_pred HHHHHHHHHHH
Confidence 77777755444
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.75 E-value=0.028 Score=57.73 Aligned_cols=152 Identities=10% Similarity=0.067 Sum_probs=86.7
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCC-cCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDP-INGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~-~~~~~~~~y~~l~~ 97 (457)
.|+.+++...+.+..+.+++. .++.|-...+.|+.. ........+.......++.+-.++..+ +. +..|.+|.-+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~--~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAH--NSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhc--CCccHHHHHH
Confidence 678888888888888877765 667887777778743 222222222223333444443221111 11 2358999999
Q ss_pred HHcCCcchhh---hHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcC
Q 012732 98 LNLGKTQTWF---CGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFH 174 (457)
Q Consensus 98 ~~~Gk~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~ 174 (457)
+=||++.+.+ ..+...+.........+...+..++.+.+. +...-+++..+++........++
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi--------------~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL--------------DYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--------------cHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999764433 344444444444455555666666666431 11222344555555666667777
Q ss_pred chhHHHHHHHHHHH
Q 012732 175 NMEWLSVIAAIMSF 188 (457)
Q Consensus 175 ~l~~~s~~~~~~~~ 188 (457)
...+.-.+..+.++
T Consensus 178 av~~TD~iQ~~i~~ 191 (487)
T TIGR02121 178 AVSWTDFVQGLLMF 191 (487)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777665554
No 70
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.70 E-value=0.031 Score=57.70 Aligned_cols=153 Identities=10% Similarity=0.022 Sum_probs=88.2
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHH-HHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVT-YVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
.|+.+++...+.+..+.+++. .++.|-...+.|+.. . ...+...+. .....++.+-.+.... ...+..|.+|.-+
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~T~~e~l~ 115 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHTE-YNNNALTLPDYFT 115 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCceeHHHHHH
Confidence 688899999999988888887 667888887888753 1 111111111 1222222211110000 0111359999999
Q ss_pred HHcCCcchh---hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcC
Q 012732 98 LNLGKTQTW---FCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFH 174 (457)
Q Consensus 98 ~~~Gk~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~ 174 (457)
+=||++.+. +..+...+.....+.+.+...+..+..+++ .+...-+++..+++.......-++
T Consensus 116 ~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl~ 181 (502)
T PRK15419 116 GRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGGFL 181 (502)
T ss_pred HHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhhHH
Confidence 999976443 344444444445555555566666666543 222233455566666667777788
Q ss_pred chhHHHHHHHHHHHH
Q 012732 175 NMEWLSVIAAIMSFA 189 (457)
Q Consensus 175 ~l~~~s~~~~~~~~~ 189 (457)
...+.-.+..+.++.
T Consensus 182 aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 182 AVSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888887777765543
No 71
>PRK11017 codB cytosine permease; Provisional
Probab=97.67 E-value=0.029 Score=56.15 Aligned_cols=173 Identities=16% Similarity=0.113 Sum_probs=88.9
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhc
Q 012732 90 RSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ 169 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~ 169 (457)
.++.-+.|..||.+|..+..+...+...+-........++.+.+..+. +.....+++.++..+.+.
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~--------------~~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGL--------------DINLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC--------------CHHHHHHHHHHHHHHHHH
Confidence 489999999999999999988888877776666666666666554321 111234444555455443
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhh-ccCcceehhhh
Q 012732 170 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFA-YPYSIILLEIQ 248 (457)
Q Consensus 170 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~~~~i~~i~ 248 (457)
.. .+.++++...+........+. ..+....+.+..+.....++.. . ..+..++...+-. -..-.+.++..
T Consensus 137 ~G-~~~i~~~~~~~~p~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~-~---~~~~~a~~~~~g~~~~~~~~~~Dys 207 (404)
T PRK11017 137 FG-ISALTILSRIAVPAIALLGGY----SVWLAVNDVGGLDGLKAIVPAE-P---LDFSAALTLVVGSFISGGTLTADFV 207 (404)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCchhhhhcCCCCC-c---ccHHHHHHHHHHHHHHhHhcCCChH
Confidence 32 455555555554433321111 1112222111011111111111 1 1233333332222 23456789999
Q ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHhhhccccccccc
Q 012732 249 DTLKSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGN 289 (457)
Q Consensus 249 ~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 289 (457)
+..|++ |+-......+..+...+-..+|...-...|+
T Consensus 208 Ry~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 208 RFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred hhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 998876 4444455555555555555556554444543
No 72
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.57 E-value=0.1 Score=51.86 Aligned_cols=105 Identities=17% Similarity=0.083 Sum_probs=67.2
Q ss_pred ccchHHHHHHHHHhhhhccccchhHHHH-HhhCcchHHHHH---HHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHH
Q 012732 21 RTGTLRSCVAHIITAVIGSGVLSLAWST-AQLGWIAGPASL---LCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAV 96 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~GiL~lP~af-~~~G~~~g~i~l---~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 96 (457)
+..+.....+....+-+|.|-++--... ++-|+-...+.+ +....+...+.++-..+ | .+..|..
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivT--------G---~~laq~i 83 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVT--------G---KGLAEAI 83 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------C---CcHHHHH
Confidence 3455555666666666776655543333 355553322111 11223333344433332 1 2788899
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012732 97 RLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQK 136 (457)
Q Consensus 97 ~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 136 (457)
++-++|+..++..+...+....++++-.+..+-.++-++.
T Consensus 84 r~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 84 RERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988888887753
No 73
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.43 E-value=0.095 Score=52.19 Aligned_cols=172 Identities=18% Similarity=0.200 Sum_probs=95.4
Q ss_pred HHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCc
Q 012732 94 DAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDF 173 (457)
Q Consensus 94 ~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l 173 (457)
.++|..||+++.++..+++.+.+.|-...-.+..++...+. + ..+..+++++.++++...++.. .
T Consensus 85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~-------------~~~~~~~ili~g~l~~l~~ifG-~ 149 (442)
T COG1457 85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-T-------------GLPVWAGILIIGVLMTLVTIFG-Y 149 (442)
T ss_pred eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-C-------------CCcHHHHHHHHHHHHHHHHHHh-H
Confidence 46778899999999999999999999998888888872111 0 1233455555555555544332 4
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccCCCCChhHHHHHHHHHHHHHHhhc-cCcceehhhhccc
Q 012732 174 HNMEWLSVIAAIMSFAYSFIGFGLGFAKVIE-NGRIKGSIAGVPTANLADKLWLAFQALGDIAFAY-PYSIILLEIQDTL 251 (457)
Q Consensus 174 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m 251 (457)
|.+..++..+....+. +.....+.... .+..+. ...+.+. +..++..+++..+-.+ ..-....+..+.+
T Consensus 150 r~l~~l~~~a~~~~~~----lf~~l~~~~~~~~~~~~~--~~~~~~~---~~~~fl~a~slv~g~~~sw~~~~aDysRy~ 220 (442)
T COG1457 150 RALHKLERIAVPLLLL----LFLYLLALLFRSKGGLDA--LWVKGPT---SPLSFLSALSLVIGSFASWGPYAADYSRYA 220 (442)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHhcccccce--eeccCCC---cchhHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 4455555555544331 12222222233 111111 1111111 1223444444333223 3556688888999
Q ss_pred cCCCccchhhhHHHHHHHHHHHHHHHhhhccccccccccc
Q 012732 252 KSPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGNDT 291 (457)
Q Consensus 252 ~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 291 (457)
|+|+. +|.-.....+.......-+.+|.....+-|+..
T Consensus 221 ~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 221 PSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred CCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 98842 245555555555566666677776666666555
No 74
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.22 E-value=0.29 Score=49.38 Aligned_cols=45 Identities=20% Similarity=0.327 Sum_probs=34.3
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012732 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQ 135 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 135 (457)
+..|+.++-+||+..++..+...+...+...+-++..+..++.++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999988877777767777777777776666665543
No 75
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.21 E-value=0.088 Score=52.43 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=56.9
Q ss_pred ccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHH---HhcccCCCCcCCcccccH----
Q 012732 21 RTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLL---ADCYRSPDPINGKRNRSY---- 92 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l---~~~~~~~~~~~~~~~~~y---- 92 (457)
++.|.+++.+..+.+.+|+| ++++|-+.+..| ..++.++-+.+++..-+.+.. ...+++ ++++. +|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~---~~~~g--~~~GGP 118 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRE---RDADG--VFRGGP 118 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeee---eCCCC--CEecCh
Confidence 45899999999999999998 999999977666 556666666555555444333 332332 11111 35
Q ss_pred -HHHHHHHcCCcchhhhHHH
Q 012732 93 -IDAVRLNLGKTQTWFCGLL 111 (457)
Q Consensus 93 -~~l~~~~~Gk~~~~~~~~~ 111 (457)
..+-+...|||.+.+..++
T Consensus 119 ~yyi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 119 MYYIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHHHhCccHHHHHHHHH
Confidence 6677777788866666665
No 76
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.07 E-value=0.4 Score=48.12 Aligned_cols=199 Identities=12% Similarity=0.181 Sum_probs=101.8
Q ss_pred ccHHHHHHHHcCCcchhhh---HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCC---ccccCCccch--HhHH
Q 012732 90 RSYIDAVRLNLGKTQTWFC---GLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNA---PCAYGDTKHM--LLFG 161 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~---~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~ 161 (457)
.+|+.+.|..||-++..+- .....+.-||.-. -..+..+..++.....+...++. ....+...++ +++-
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW 179 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFW 179 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHH
Confidence 5999999999998876443 3444444555543 45555555555544322111111 1111222221 1222
Q ss_pred HHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccccccCCCCChhHHHHHHHHHHHHHHhhcc
Q 012732 162 AVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRI--KGSIAGVPTANLADKLWLAFQALGDIAFAYP 239 (457)
Q Consensus 162 ~v~~~l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~ 239 (457)
++- .++..+..++++++-..+..++... +..+.++-..+.+.. .++..+ ...+.....|.++.++...+-.|.
T Consensus 180 ~l~-~l~~~~g~~~Ir~~~~~a~p~~~~~---~~gl~Iw~~~~a~g~~~~~~~p~-~~~~~~~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 180 VLQ-LLVLFKGMESIRKFETWAGPLVYIA---MLGLAIWALVKAGGSSILGELPA-GTVSGSNSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHH-HHHHhcCHHHHHHHHHHhchHHHHH---HHHHHHHHHHhcCCcCccccCCC-CCCCcchhHHHHHHHHHHHHHHHH
Confidence 222 2234566788888877777665532 223334433333321 111110 012223334555544444333333
Q ss_pred -CcceehhhhccccCCCccchhhhHHHHHHHHHHHHHHHhh----hcccccccccc--cccccccccc
Q 012732 240 -YSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCC----GCFGYAAFGND--TPGNLLTGFG 300 (457)
Q Consensus 240 -~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~----g~~gy~~fg~~--~~~~il~~~~ 300 (457)
..-|+|...+.-|+| |.-..--.++..+...+.-++ +...+..||+. .+.++..++.
T Consensus 255 tl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 255 TLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 567899999999987 333333444444444444444 44467789988 5567788775
No 77
>PRK10484 putative transporter; Provisional
Probab=97.07 E-value=0.49 Score=49.12 Aligned_cols=155 Identities=10% Similarity=0.078 Sum_probs=82.3
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+++-..+.+..+.++++ .++.|-...+.|+.. ........+.......++.+-.++. +..|.+|.-++
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~r~------~~~T~~e~l~~ 109 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYLKS------GITTIPDFLEE 109 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHHhc------CCccHHHHHHH
Confidence 788999999999988888777 677888777778643 1111111111122333334333221 23599999999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHH-HHHHHhhhhHHHHHHhcccccCCCCCccccCCccch----HhHHHHHHHhhcCCCc
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAV-AYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHM----LLFGAVQVVMSQIPDF 173 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~-~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~i~~~v~~~l~~~~~l 173 (457)
-||++.+.+......+....... ..+...+..+.+++... .....+...-. ++.+++........-+
T Consensus 110 Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--------~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl 181 (523)
T PRK10484 110 RYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--------ELLGISYGAAIWLLVWLIGIIGAIYAVFGGL 181 (523)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------hhcCCcHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 99998777666554444333322 22223333444432110 00001111111 1223344555566667
Q ss_pred CchhHHHHHHHHHHHH
Q 012732 174 HNMEWLSVIAAIMSFA 189 (457)
Q Consensus 174 ~~l~~~s~~~~~~~~~ 189 (457)
+...+.-.+..+.++.
T Consensus 182 ~aV~~TD~iQ~vim~i 197 (523)
T PRK10484 182 KAVAVSDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777655543
No 78
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.91 E-value=0.52 Score=46.84 Aligned_cols=177 Identities=10% Similarity=0.058 Sum_probs=103.1
Q ss_pred ccHHHHHHHHcC-CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhh
Q 012732 90 RSYIDAVRLNLG-KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS 168 (457)
Q Consensus 90 ~~y~~l~~~~~G-k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~ 168 (457)
+|++|...+=++ ++.|++..+.-.+..+.-.++.+...|..+.-+++. +...-+++..+++....
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------------~~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------------PYHVGVVIGGILMMVYV 169 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------------CceeehhhHhHHHHHHH
Confidence 699997766555 567777777777777777777888888877777652 12233455566666666
Q ss_pred cCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c---cccccC----CCCChh---HHHHHHHHHHHHHHhh
Q 012732 169 QIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRI-K---GSIAGV----PTANLA---DKLWLAFQALGDIAFA 237 (457)
Q Consensus 169 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~---~~~~~~----~~~~~~---~~~~~~~~~~~~~~fa 237 (457)
....++...|.+.+--+....-.++..+....+.-.+... . ...+.. ...++. .+..+++...-..++.
T Consensus 170 v~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~G 249 (529)
T COG4147 170 VLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVG 249 (529)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHc
Confidence 7788999999998887666544444444444442211110 0 000111 011111 1223444433334444
Q ss_pred ccCcceehhhhcc-ccCCCccchhhhHHHHHHHHHHHHHHHhhhccccc
Q 012732 238 YPYSIILLEIQDT-LKSPPPENKTMKMASMISIFITTFFYLCCGCFGYA 285 (457)
Q Consensus 238 f~~~~~i~~i~~~-m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 285 (457)
.. -+|.+.-. -.-| +.|+-|+.+.++...+..+|+..-..|+.
T Consensus 250 TA---gLPHil~RFfTvp--~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 250 TA---GLPHILMRFFTVP--DAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred cC---CCCeEEEEEEecC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33433222 2222 34888999999999999999977766655
No 79
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.87 E-value=0.0067 Score=61.54 Aligned_cols=248 Identities=15% Similarity=0.060 Sum_probs=114.5
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHh--hCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQ--LGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~--~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
+|+.++++.+..-.+..+....+.+-..... .++..+++..++-.++...-..+....-. +.| .++..++|
T Consensus 6 ~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~----r~G---l~~~v~sR 78 (440)
T PF02133_consen 6 ERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP----RTG---LPTMVLSR 78 (440)
T ss_dssp G--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH----CC------HHHHTT
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc----ccC---CCchhcch
Confidence 5666666666666665555555544443322 23344445544444444433334433221 222 37888999
Q ss_pred HHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCC-CccccCCccch--HhHHHHHHHhhcCCCcC
Q 012732 98 LNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHN-APCAYGDTKHM--LLFGAVQVVMSQIPDFH 174 (457)
Q Consensus 98 ~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~--~i~~~v~~~l~~~~~l~ 174 (457)
..||++|..+..++..+...|-...-....++.+..+.+....+.+... .........++ +++.++..+.. ...++
T Consensus 79 ~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~ 157 (440)
T PF02133_consen 79 ASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMK 157 (440)
T ss_dssp TTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHH
T ss_pred hccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHH
Confidence 9999999999999999999999998899999999999875321100000 00001111111 12222222222 34455
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhc-cCcceehhhhccccC
Q 012732 175 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAY-PYSIILLEIQDTLKS 253 (457)
Q Consensus 175 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~~~~i~~i~~~m~~ 253 (457)
.++.+.......... +.+....+...+.+. +....-+ .++.. ...+..++...+-.+ ..-.+.+...+.+|+
T Consensus 158 ~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~-~~~~~-~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~ 230 (440)
T PF02133_consen 158 ALRRLAVIAAPILLV---VFIGMLIWALSKAGG--GPLLSAP-ASPSP-SGSFLAAIALVIGSWISWAPNASDYSRYAKS 230 (440)
T ss_dssp HHHHHHHCCHHHHHH---HHHHHHHHHHHHCT---HHHCCS---S-----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--
T ss_pred HHHhHHhhhhHHHHh---hhhheeEEEeecCCc--chhhhCc-ccchh-HHHHHHHHHHHHhhhhhhhhccccHHhhCCC
Confidence 555555544443321 111122222222111 1111100 01110 001223333322222 233456788999997
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHhhhcccccc
Q 012732 254 PPPENKTMKMASMISIFITTFFYLCCGCFGYAA 286 (457)
Q Consensus 254 p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~ 286 (457)
+ ++-.+....+..........+|++|...
T Consensus 231 ~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 231 D----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 6 5556666677766666666666665543
No 80
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.71 E-value=0.091 Score=50.61 Aligned_cols=109 Identities=12% Similarity=0.083 Sum_probs=86.0
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
.-+.+.+..+.+=..++-|+|-+-=|..-++-||+++.+++++-+++.---..+..-.....+ +| +|.+|++++.
T Consensus 49 YvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~--~G---~Si~~i~~~~ 123 (376)
T PF02554_consen 49 YVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRH--KG---KSIGEIAGKY 123 (376)
T ss_pred CCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcC--CC---ccHHHHHHHH
Confidence 445667788888899999999999899889999999999988877776666666554332211 12 3999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRA 133 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 133 (457)
.||+++.+..+...+.+.....++.....+.+..
T Consensus 124 lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 124 LGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999888888777776666544
No 81
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.25 E-value=0.87 Score=44.75 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=53.4
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhc-
Q 012732 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQ- 169 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~- 169 (457)
+..|..++-+||+..++..+...+.......+-+...+..++.+++ .+...+..+..+..+.+..
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHHH
Confidence 7888888899999888888888888888888777777777766542 2223444444444444433
Q ss_pred -CCCcCchhHHHHHHHH
Q 012732 170 -IPDFHNMEWLSVIAAI 185 (457)
Q Consensus 170 -~~~l~~l~~~s~~~~~ 185 (457)
.++.|.+..+...-..
T Consensus 109 ~~~~y~~~E~~~~~lv~ 125 (358)
T PF01566_consen 109 SSGGYRRLERILKVLVA 125 (358)
T ss_pred HhccchHHHHHHHHHHH
Confidence 5666666665544443
No 82
>PRK15015 carbon starvation protein A; Provisional
Probab=96.01 E-value=0.093 Score=54.08 Aligned_cols=107 Identities=16% Similarity=0.157 Sum_probs=80.8
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
.-+.+-+-.+-|=+.++-|+|-+-=|..-++.||.++.+++++-+++.---..+..-..... ++| +|.+|++++.
T Consensus 80 YvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R--~~G---rSig~ia~~~ 154 (701)
T PRK15015 80 YVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR--RDG---RSLGELVKEE 154 (701)
T ss_pred cCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec--CCC---ccHHHHHHHH
Confidence 33445556677888999999999999999999999999998887776655555554432221 112 3999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhH
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSM 131 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 131 (457)
.||+++.+..+...+.+......+.....+.+
T Consensus 155 iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 155 MGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888777777776666666655
No 83
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=95.87 E-value=2.2 Score=42.48 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHh-cccCCCCcCCcccccHHHHHHHH
Q 012732 22 TGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLAD-CYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 22 ~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~-~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
-.|-..-++..+++.+|-| +--.||...+-|--.-.+..++..++--+.. ++.| +..+..+++. ..+|+.++.
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPl-li~Ef~iGr~~~~~~--~~a~~~l~~-- 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPL-LLAEFAIGRRGRKNA--VGAFRKLAP-- 82 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHH-HHHHHHhhhhcCCCh--hHHHHHhcc--
Confidence 3455666778899999999 7889998887665433333333333333333 2333 2222222211 236666655
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKS 137 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 137 (457)
+|+ ...+.+......+..+.-|.+..|=.+..+...
T Consensus 83 -~~~-~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s 118 (439)
T COG0733 83 -KKK-WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKS 118 (439)
T ss_pred -Ccc-chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 333444445555555666666666555555443
No 84
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.73 E-value=0.34 Score=48.98 Aligned_cols=106 Identities=15% Similarity=0.133 Sum_probs=80.3
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
.-+.+.+..+-|=+.++-|+|-+-=|..-++.||.+|.+++++-+++.---..+++-..... ++| .|.+|++++.
T Consensus 49 YVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR--~~G---~Si~~ia~~~ 123 (575)
T COG1966 49 YVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVR--HGG---KSIGEIAGKY 123 (575)
T ss_pred cccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeec--cCC---ccHHHHHHHH
Confidence 44566778888888999999999999999999999999999887777766666665433221 122 3999999999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 012732 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTS 130 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~ 130 (457)
+|+..+.+..+...+........+.......
T Consensus 124 lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 124 LGRTAKVFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988877777666665444444433
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.96 E-value=4.5 Score=40.51 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhhhhccccchhHHHHHh---hCcchHHHHHHHHHHHHHHHH
Q 012732 24 TLRSCVAHIITAVIGSGVLSLAWSTAQ---LGWIAGPASLLCFAIVTYVSS 71 (457)
Q Consensus 24 s~~~a~~~li~~~iG~GiL~lP~af~~---~G~~~g~i~l~~~~~~~~~s~ 71 (457)
.....-+.+.....|+|=|-.|-...+ .-|.++.+-+++.++.--.-+
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg 54 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG 54 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 345667788889999999999987642 446667777776666444333
No 86
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.90 E-value=4.3 Score=40.46 Aligned_cols=60 Identities=17% Similarity=0.173 Sum_probs=43.8
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHH---HHHhcccC
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSF---LLADCYRS 80 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~---~l~~~~~~ 80 (457)
+++.|.+++.+..+.+.+|+| +-+...|..-.|. .++.++-+.+++.+-+-+ .|...+|+
T Consensus 16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmatk~~E~~La~~yR~ 79 (416)
T PF01235_consen 16 EGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMATKYAEVTLAQKYRE 79 (416)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHHHHHHHHHHHHheE
Confidence 557899999999999999999 6778888875554 467777777766554443 44444443
No 87
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=94.67 E-value=7 Score=41.33 Aligned_cols=106 Identities=17% Similarity=0.186 Sum_probs=62.7
Q ss_pred hHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCC
Q 012732 24 TLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGK 102 (457)
Q Consensus 24 s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk 102 (457)
+......=-+..+.|.= .+=+-+....+|...+..+..+|++.++.|+.-+...+..--...|- +|-- -.+.+|+
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG---sYfm-ISRsLGP 191 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG---SYFM-ISRSLGP 191 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC---eeEE-EecccCc
Confidence 33333333344444443 23367777788888888887777777777766665543221111111 4432 2345677
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012732 103 TQTWFCGLLQNLTFYGTAVAYVITTSTSMRA 133 (457)
Q Consensus 103 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 133 (457)
-.+-.+.++..+-.-.....|++..-+.+-.
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 7777777777777777777788777666544
No 88
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.42 E-value=4.5 Score=40.51 Aligned_cols=262 Identities=13% Similarity=0.128 Sum_probs=129.5
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcc-cccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKR-NRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~-~~~y~~l~~~ 98 (457)
+|+=++++-+..=....++.+.--+..+--+.|+-+ .=..+.+.+-..++...++-.. +.|.+ ..+++-..|.
T Consensus 53 ~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLsw-wq~~~tv~vG~~~~~~f~~lns-----~~G~~yhIsFpv~sR~ 126 (572)
T KOG2466|consen 53 RRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSW-WQTWITVWVGYLFTAIFLVLNS-----RPGSDYHISFPVLSRS 126 (572)
T ss_pred cccccHHHHHHHHHhccccccceeehhhHHhccCCH-HHHHHHHHHHHHHHHHHHHHcc-----CCCcccccceeeeeee
Confidence 777888888888788888888887777777777654 1111122222333333333321 22221 1466666777
Q ss_pred HcCCcch---hhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccc----cCCCCCccccCCccch--HhHHHHHHHhhc
Q 012732 99 NLGKTQT---WFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYH----REGHNAPCAYGDTKHM--LLFGAVQVVMSQ 169 (457)
Q Consensus 99 ~~Gk~~~---~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~--~i~~~v~~~l~~ 169 (457)
.||-++. .+..+.+.+..+|+.. -..++..+-+++....+ ++.-..+ ..+...++ +++-++-.|.-+
T Consensus 127 sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~-~~tt~e~i~FfIFwv~s~~~~~ 202 (572)
T KOG2466|consen 127 SFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKP-GTTTYEFIGFFIFWVASLPFYW 202 (572)
T ss_pred ehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCC-CCchHHHHHHHHHHHHhhheee
Confidence 7776653 4455566666666544 34455544444433222 1111111 12223332 344444445544
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccCCCCChhHHHHHHHHHHHHHHhhcc-Ccceehhh
Q 012732 170 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSI-AGVPTANLADKLWLAFQALGDIAFAYP-YSIILLEI 247 (457)
Q Consensus 170 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~i~~i 247 (457)
.| ..+++.+-....+.+... +.+..++...+.++. +.. ..-.........|.++.++.-.+=.|. ...|.|..
T Consensus 203 ~~-p~~ir~lf~~ka~~t~fA---~~g~LIw~l~kAhG~-G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDF 277 (572)
T KOG2466|consen 203 FP-PYKIRHLFTWKAVLTPFA---AFGFLIWLLKKAHGL-GHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDF 277 (572)
T ss_pred cc-HHHhhhHHHHHHhhhHHH---HHHHHHHHHHhcCCc-cccccCCCcccccchhHHHHHHHHHHHhccchhhccCchh
Confidence 44 456665555555444322 222223333333321 111 111112233345666655555554444 56788888
Q ss_pred hccccCCCccchhhhHHHHHHHHHHHHHHHh----hhccccccccccc--ccccccccc
Q 012732 248 QDTLKSPPPENKTMKMASMISIFITTFFYLC----CGCFGYAAFGNDT--PGNLLTGFG 300 (457)
Q Consensus 248 ~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~----~g~~gy~~fg~~~--~~~il~~~~ 300 (457)
.+--|+|. +....-..+..+...+-.+ .+..++-.||.+- |-++++++.
T Consensus 278 sRF~ksp~----a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 278 SRFAKSPN----AIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred HhhcCCCC----ccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 88888883 3333333333334444444 4445677888773 445555553
No 89
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=93.75 E-value=7.1 Score=37.87 Aligned_cols=151 Identities=11% Similarity=0.098 Sum_probs=88.4
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHH-HHHHHHHHHhcccCCCCcCCcccccHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIV-TYVSSFLLADCYRSPDPINGKRNRSYIDAVR 97 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~-~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 97 (457)
.|+.+.+-..+....+=+++. .++=|-+-.+.|.-+ +++..+-+- .+.+.-.+.+-......+-| ..+..|+-+
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~n--AltI~D~l~ 113 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYN--ALTINDLLF 113 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhC--CeeHHHHHH
Confidence 455555555555555555543 444466666666533 333333332 23333334432221111112 247778777
Q ss_pred HHc-CCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCch
Q 012732 98 LNL-GKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 176 (457)
Q Consensus 98 ~~~-Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l 176 (457)
+=+ ++...|...+.+.+...+...+..+..++.++.... .+...-..+++..+........+|..
T Consensus 114 ~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~g--------------idY~tgL~ifa~~V~iYt~fGGFRAv 179 (473)
T COG4145 114 ARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALG--------------IDYTTGLLIFAVSVAIYTAFGGFRAV 179 (473)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--------------CCchhhHHHHHHHHHHHHhhcceeee
Confidence 664 566678888889999999999999999998887654 23334456677777766677777776
Q ss_pred hHHHHHHHHHHH
Q 012732 177 EWLSVIAAIMSF 188 (457)
Q Consensus 177 ~~~s~~~~~~~~ 188 (457)
...-.+.-+.++
T Consensus 180 vltD~IQG~vml 191 (473)
T COG4145 180 VLTDTIQGLVML 191 (473)
T ss_pred ehHHHHHHHHHH
Confidence 666555554444
No 90
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.54 E-value=1.5 Score=43.85 Aligned_cols=139 Identities=18% Similarity=0.281 Sum_probs=85.8
Q ss_pred HHhhhhccccc---hhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhh
Q 012732 32 IITAVIGSGVL---SLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFC 108 (457)
Q Consensus 32 li~~~iG~GiL---~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~ 108 (457)
++++.-.-|.- ..-....++|.+.++.+.++-+.+.+.....-... .+..++. .-..+++++.+|+.|..+.
T Consensus 205 Ii~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~~g~--~lL~~i~~~~~G~~G~~ll 279 (427)
T PF05525_consen 205 IINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDINGA--ELLSQIANHLFGSAGQILL 279 (427)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCCCHH--HHHHHHHHHHcChhHHHHH
Confidence 34444445554 23444456676665555443333333222211110 1122222 3677889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHH
Q 012732 109 GLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSF 188 (457)
Q Consensus 109 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~ 188 (457)
.++..+.|+-++++....++|++++..+. .+++.|.++..++-..++ |+.--+.++...-++.+
T Consensus 280 ~iiv~lACLTTaIGL~~a~a~yf~~~~~k-------------isY~~~v~i~~i~S~~ia---n~Gl~~Ii~~s~PiL~~ 343 (427)
T PF05525_consen 280 GIIVFLACLTTAIGLISACAEYFSELFPK-------------ISYKVWVIIFTIFSFIIA---NLGLDQIIKISVPILMF 343 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cChHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999998763 455677777766666554 33333444555555554
Q ss_pred HHH
Q 012732 189 AYS 191 (457)
Q Consensus 189 ~~~ 191 (457)
.|-
T Consensus 344 iYP 346 (427)
T PF05525_consen 344 IYP 346 (427)
T ss_pred HhH
Confidence 444
No 91
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=93.47 E-value=1.1 Score=44.10 Aligned_cols=66 Identities=14% Similarity=0.218 Sum_probs=52.6
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhh
Q 012732 90 RSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMS 168 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~ 168 (457)
.-..+++++.+|+.|+.+..+...+.++.++++.+...+|.+.++.+. .+.+.|.++..+....++
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-------------~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-------------LSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CCHHHHHHHHHHHHHHHH
Confidence 377889999999999999999999999999999999999998887542 344556555555555444
No 92
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.16 E-value=1.5 Score=43.03 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=86.3
Q ss_pred HHhhhhccccchhH---HHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccC--CCCcCCcccccHHHHHHHHcCCcchh
Q 012732 32 IITAVIGSGVLSLA---WSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRS--PDPINGKRNRSYIDAVRLNLGKTQTW 106 (457)
Q Consensus 32 li~~~iG~GiL~lP---~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~--~~~~~~~~~~~y~~l~~~~~Gk~~~~ 106 (457)
++|+.=.-|+-.=. ...-.+|++.++.+-.+-..+.+.. ...++ .+.++|. .=..+..++.||+.|.+
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~--~IL~~~s~~~fG~~G~~ 279 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGG--QILSAYSQHLFGSYGSI 279 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchH--HHHHHHHHHHhchhhHH
Confidence 34555555555544 3344678877666655544444444 11111 1112232 36777889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHH
Q 012732 107 FCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 184 (457)
Q Consensus 107 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~ 184 (457)
+...+..+.|.-++++.+..++|+.++..+. .|+..|..++.+.-+.++.. .++.+-..|.--.
T Consensus 280 lL~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflvan~-GL~~Ii~isvPvL 343 (431)
T COG1114 280 LLGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVANL-GLEQIIKISVPVL 343 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 9999999999999999999999999998764 55567777777776666532 2444444444433
No 93
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=92.88 E-value=11 Score=37.75 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=29.8
Q ss_pred hHHHHHHHHHhhhhccccchhHHHHH-hhC--cchHHHHHHHHHH
Q 012732 24 TLRSCVAHIITAVIGSGVLSLAWSTA-QLG--WIAGPASLLCFAI 65 (457)
Q Consensus 24 s~~~a~~~li~~~iG~GiL~lP~af~-~~G--~~~g~i~l~~~~~ 65 (457)
.....-+.+..-..|+|=|-.|-... ++| |..+.+-+++.++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~V 53 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAV 53 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHH
Confidence 45667788899999999999988765 343 5555555555444
No 94
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=92.17 E-value=0.29 Score=49.78 Aligned_cols=232 Identities=14% Similarity=0.153 Sum_probs=129.0
Q ss_pred hHHHHHHHHHhh-hhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcC
Q 012732 24 TLRSCVAHIITA-VIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLG 101 (457)
Q Consensus 24 s~~~a~~~li~~-~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 101 (457)
+||+.++.-+.- +-|.= .|=+++...|+|+..+++++..+..++..|..=-.....+...+.|- .|. +..+.+|
T Consensus 31 g~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg---~yf-lis~slg 106 (643)
T KOG2083|consen 31 GWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG---VYF-LISRSLG 106 (643)
T ss_pred eeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc---EEE-EEEeccc
Confidence 455555433221 22221 34579999999999999988888877777665443322222222221 221 2334567
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHH
Q 012732 102 KTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSV 181 (457)
Q Consensus 102 k~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~ 181 (457)
+..+--+.++..+.+.-.|..|.+.+++++..++.... ...... .-.+...++.- -+.-..++.+.
T Consensus 107 ~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s--------~~~i~g--i~~vt~~ill~----i~~ag~~w~~k 172 (643)
T KOG2083|consen 107 PEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETES--------KEMIDG--IGSVTVLILLA----INVAGVEWEAK 172 (643)
T ss_pred ccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--------HHHhcc--hhHHHHHHHHH----hhhccchhHHH
Confidence 77777788888888888888999999999999987531 001111 11111222222 23445566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc--ccc----c---c-cc-CCCCChhHHHHHHHHHHHHHHhhccCcceehhhhcc
Q 012732 182 IAAIMSFAYSFIGFGLGFAKVIENGR--IKG----S---I-AG-VPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDT 250 (457)
Q Consensus 182 ~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~----~---~-~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~ 250 (457)
...++.+. +.+.+...+...+.... ..+ + . ++ .|+..+. ..+|+-+++++=+..|.-.=..+.+.
T Consensus 173 ~q~~ll~i-l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~---~tfF~vf~vfFpaatgilaG~nisGd 248 (643)
T KOG2083|consen 173 LQIVLLLI-LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG---YTFFSVFAVFFPAATGILAGANISGD 248 (643)
T ss_pred HHHHHHHH-HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC---CceEeeeeeecchhhhhhccccccCC
Confidence 65544331 11222222222211111 000 0 0 00 1111211 23445556666666566666678889
Q ss_pred ccCCCccchhhhHHHHHHHHHHHHHHHhhh
Q 012732 251 LKSPPPENKTMKMASMISIFITTFFYLCCG 280 (457)
Q Consensus 251 m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g 280 (457)
+|+|+ +..++....+......+|..+.
T Consensus 249 L~~Pq---~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 249 LKDPQ---KAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred CCCch---hhcccchhhhhhhhhhhhhhhh
Confidence 99997 8899999999999999996443
No 95
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=90.84 E-value=0.3 Score=50.44 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhhccCcceehhhhccccCCCccchhhhHHHHHHHHHHHHHHHhhhcc
Q 012732 226 LAFQALGDIAFAYPYSIILLEIQDTLKSPPPENKTMKMASMISIFITTFFYLCCGCF 282 (457)
Q Consensus 226 ~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~ 282 (457)
++-+.+++++-+-.|...=-....|+|+|+ |.+++-...+....+++|++..++
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~fl 348 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFL 348 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCcc---ccCCccchHHHHHHHHHHHHHHHH
Confidence 344566666655555555566788999998 899999999999999999977654
No 96
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=88.96 E-value=27 Score=34.98 Aligned_cols=62 Identities=19% Similarity=0.150 Sum_probs=43.5
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHH---HHHHHHHhcccCCC
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTY---VSSFLLADCYRSPD 82 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~---~s~~~l~~~~~~~~ 82 (457)
++..|.+++.+.-+.+.+|+| +-+..-|.+-.|. .++.++=+.+++.. |.=..|...+|..+
T Consensus 60 ~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd 125 (452)
T COG1115 60 KGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKD 125 (452)
T ss_pred CCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeC
Confidence 456889999999999999999 6668888875554 46666666655544 44445555555433
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.89 E-value=5.3 Score=40.06 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=81.4
Q ss_pred HHHhhhhccccch---hHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCC-CcCCcccccHHHHHHHHcCCcchh
Q 012732 31 HIITAVIGSGVLS---LAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPD-PINGKRNRSYIDAVRLNLGKTQTW 106 (457)
Q Consensus 31 ~li~~~iG~GiL~---lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~-~~~~~~~~~y~~l~~~~~Gk~~~~ 106 (457)
.+++++-.-|.-. +-....++|.+.++.+.++-+.+.+.... .....+ .++|. .=.....++.+|++++.
T Consensus 208 iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~----s~~~~~~~~~g~--~il~~~~~~~~G~~G~~ 281 (439)
T PRK15433 208 VIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSD----SASLVDQSANGA--AILHAYVQHTFGGGGSF 281 (439)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CcccccCCCcHh--HHHHHHHHHHhCHHHHH
Confidence 3445555555432 22333456666655554444444433321 111011 11222 24556788899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHH
Q 012732 107 FCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIM 186 (457)
Q Consensus 107 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~ 186 (457)
+..+...+.++-++++-...+++.+++..+ .+++.+.++..++.++++.. ..-+.++...-++
T Consensus 282 ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~---G~~~II~~s~PiL 344 (439)
T PRK15433 282 LLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL---GLSQLIQISVPVL 344 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 999999999999999999999999888643 34456667777777776643 3333444444444
Q ss_pred HHHHH
Q 012732 187 SFAYS 191 (457)
Q Consensus 187 ~~~~~ 191 (457)
.+.|-
T Consensus 345 ~~iYP 349 (439)
T PRK15433 345 TAIYP 349 (439)
T ss_pred HHHhH
Confidence 44433
No 98
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=87.23 E-value=33 Score=34.08 Aligned_cols=94 Identities=19% Similarity=0.147 Sum_probs=49.7
Q ss_pred HhhhhccccchhHHHH--HhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhhHH
Q 012732 33 ITAVIGSGVLSLAWST--AQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGL 110 (457)
Q Consensus 33 i~~~iG~GiL~lP~af--~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~~~ 110 (457)
..+-+|.|-+. -+.- ++.|+ ..++.++.+.+..+..+.+.-... -..| .+..|.+++-++|+.++..-+
T Consensus 14 a~a~idPG~i~-t~~~aGa~fGy--~LLW~llls~~~~~~~Q~~aaRlg---~vTg---~~l~~~~r~~~~~~~~~~~~~ 84 (390)
T TIGR01197 14 SIAYIDPGNYS-TDLQAGAAAGY--KLLWVLLLSNIMALLLQRLCARLG---VVTG---LDLAEVCREHYPKVPRITLWI 84 (390)
T ss_pred HHHhcCchHHH-HHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHhe---eecC---CCHHHHHHHHCCCchHHHHHH
Confidence 34445666555 1111 13333 344555555555555554432221 1222 389999999999987766555
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHH
Q 012732 111 LQNLTFYGTAVAYVITTSTSMRAIQ 135 (457)
Q Consensus 111 ~~~~~~~g~~~~y~i~~~~~l~~~~ 135 (457)
...+...++..+-++..+..++.++
T Consensus 85 ~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 85 LAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444445555555555555555543
No 99
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=84.71 E-value=53 Score=34.10 Aligned_cols=29 Identities=14% Similarity=0.240 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhhccc-cchhHHHHHhhC
Q 012732 24 TLRSCVAHIITAVIGSG-VLSLAWSTAQLG 52 (457)
Q Consensus 24 s~~~a~~~li~~~iG~G-iL~lP~af~~~G 52 (457)
+..+-.+..++..+|.| +.-.|+-..+-|
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~g 35 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENG 35 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccc
Confidence 45567788899999998 788999877554
No 100
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=84.06 E-value=13 Score=38.69 Aligned_cols=246 Identities=13% Similarity=0.106 Sum_probs=121.7
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012732 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+..++...+.++.+.+|++ ++++|--....|.-..... .. ......++.-.. ....-.....+-.|.-++
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~--~~---~l~~~~~~~~~f--~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFE--WN---ALLSVLLLGWIF--IPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHH--HH---HHHHHHhhheEE--EEEEEecCeeehhHHHHH
Confidence 678889999999999999988 8889988887776432111 11 111111111110 000001113466677788
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhH
Q 012732 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEW 178 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~ 178 (457)
-||+..+....+...++.+--...++-.-+-.+.+..+. +...-..+..++.........++..-+
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------------~~~l~~~~~~~ic~~YT~~GGlkaVi~ 182 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------------NLYLIVVILGLICVFYTALGGLKAVIW 182 (585)
T ss_pred HhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------------CceeehHHHHHHHHHHHHhcCeeEEEE
Confidence 888886666555555544443333333333334443321 111112223333333344556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H----Hhccccccccc----CCCCChhHHHHHHH-HHHHHHHhhccCcceehhh
Q 012732 179 LSVIAAIMSFAYSFIGFGLGFAKV--I----ENGRIKGSIAG----VPTANLADKLWLAF-QALGDIAFAYPYSIILLEI 247 (457)
Q Consensus 179 ~s~~~~~~~~~~~~i~~~~~~~~~--~----~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~faf~~~~~i~~i 247 (457)
.=.+....++.-...+.+....+. . +.....+..+. ..++...+.+|..+ .....-.--|+.+++..+=
T Consensus 183 TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR 262 (585)
T KOG2349|consen 183 TDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQR 262 (585)
T ss_pred hhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhH
Confidence 666666555532222222111110 0 00001111111 12233344456654 4455555666777776655
Q ss_pred hccccCCCccchhhhHHHHHHHHHH---HHHHHhhhcccccccccc
Q 012732 248 QDTLKSPPPENKTMKMASMISIFIT---TFFYLCCGCFGYAAFGND 290 (457)
Q Consensus 248 ~~~m~~p~~~~~~~~~~~~~~~~~~---~~~Y~~~g~~gy~~fg~~ 290 (457)
+-.+|+- |+-++.+....... ..++...|.+-|..|.+.
T Consensus 263 ~lsl~sl----k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~C 304 (585)
T KOG2349|consen 263 YLSLPSL----KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDC 304 (585)
T ss_pred HhccccH----HHhhhhhhhhhhHHHHHHHhhcccceeEeeecccC
Confidence 5555543 77777666554443 444557777777777543
No 101
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=83.22 E-value=46 Score=33.48 Aligned_cols=46 Identities=11% Similarity=0.172 Sum_probs=36.4
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012732 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQK 136 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 136 (457)
+..|.+++-+.||.++...+..=+..+++-+.-.+..+-.+.-+..
T Consensus 90 hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~ 135 (503)
T KOG1291|consen 90 HLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN 135 (503)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 8899999999999998888777777777777777776666666553
No 102
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=82.63 E-value=3.8 Score=41.15 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=81.8
Q ss_pred hhhhHHHHHHHHHHHHH-HHhhhccccccccccccccccccc-cccCchhHHHHHHHHHHHHhhhcccccccchHHHHHH
Q 012732 259 KTMKMASMISIFITTFF-YLCCGCFGYAAFGNDTPGNLLTGF-GFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVER 336 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~-Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 336 (457)
++-++....+..+.... .++....++..|+. ..++...+. ....+.................++|...+++.....+
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tS 299 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATS 299 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 34444333333333333 44555556666642 233333333 2222233333333334444447777777777766544
Q ss_pred HHhhhCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhhHHHHh
Q 012732 337 WFTRKYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFV 415 (457)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~~~ilP~l~~~~ 415 (457)
.+.......+..++...+ .+.+..|..........+.+.+...|. +....+..|++...+.+-+.|.+++++
T Consensus 300 Flgv~lg~~~~~~~~~~~-------~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~ 372 (415)
T COG0814 300 FLGVYLGLFEGLADLFKK-------SNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK 372 (415)
T ss_pred HhCchhhHHHhhhHHHHh-------ccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 333210000000010000 011234555666667777888888885 889999999888899999999999999
Q ss_pred Hhcc
Q 012732 416 QKKI 419 (457)
Q Consensus 416 ~~~~ 419 (457)
-++.
T Consensus 373 p~~~ 376 (415)
T COG0814 373 PRKL 376 (415)
T ss_pred HHHh
Confidence 7554
No 103
>PHA02764 hypothetical protein; Provisional
Probab=79.77 E-value=12 Score=35.53 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=58.9
Q ss_pred CCCCCcccchHHHHHH-HHHhhhhccccchhHHHHHhh--CcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCccccc
Q 012732 15 DDDGHLRTGTLRSCVA-HIITAVIGSGVLSLAWSTAQL--GWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRS 91 (457)
Q Consensus 15 ~~~~~~~~~s~~~a~~-~li~~~iG~GiL~lP~af~~~--G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 91 (457)
+..|--|+.+.+++++ |+-+...|.++ +.|+-++.. |.. .....++.++.+........+.... -|+.|.+ +.
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSA-mPrAGGd-YV 81 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTK-FPLNGGD-YA 81 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCce-EE
Confidence 3344456677788887 66665555544 556543332 333 3445555666666666666654443 3455543 45
Q ss_pred HHHHHHHHcCCcchhhhHHHHHHHHHHHH
Q 012732 92 YIDAVRLNLGKTQTWFCGLLQNLTFYGTA 120 (457)
Q Consensus 92 y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~ 120 (457)
| .++++|++.+.+..+..+.......
T Consensus 82 Y---ISRAFGP~~GFLvG~a~WLtl~~G~ 107 (399)
T PHA02764 82 Y---IRTAFSSKFYTIFGISLWLTYVLSQ 107 (399)
T ss_pred E---hHHhhCccHHHHHHHHHHHHHHhhc
Confidence 5 7889999999888887766654443
No 104
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=59.54 E-value=1.9e+02 Score=28.82 Aligned_cols=74 Identities=8% Similarity=-0.050 Sum_probs=40.7
Q ss_pred hHHHHHHHHHhhhhccccchhHHHHH-hhC--cchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHc
Q 012732 24 TLRSCVAHIITAVIGSGVLSLAWSTA-QLG--WIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNL 100 (457)
Q Consensus 24 s~~~a~~~li~~~iG~GiL~lP~af~-~~G--~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 100 (457)
..+..-+.+..-..|+|=+-.|-... ++| +..+..-+++.++.-=.-..+-..- .. .++++++++.
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~----~g------~~~~~l~~~i- 74 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVAL----YG------GGVESLATRI- 74 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhc----cC------CCHHHHhhhc-
Confidence 44566678888899999999987764 344 3344444444443322222111111 11 1677777776
Q ss_pred CCcchhhh
Q 012732 101 GKTQTWFC 108 (457)
Q Consensus 101 Gk~~~~~~ 108 (457)
||+.+.+.
T Consensus 75 ~~~fg~~f 82 (431)
T COG1114 75 GPWFGVLF 82 (431)
T ss_pred cchHHHHH
Confidence 55554433
No 105
>TIGR00909 2A0306 amino acid transporter.
Probab=45.51 E-value=3.2e+02 Score=27.22 Aligned_cols=47 Identities=9% Similarity=-0.153 Sum_probs=40.1
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 012732 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKS 137 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 137 (457)
...+..++..|+++..+..+...+..++...+.+...++.+.....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677778888888999999999999999999999999999887654
No 106
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=43.94 E-value=75 Score=28.85 Aligned_cols=77 Identities=14% Similarity=0.267 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCChHHHHHH---------hhhhhcchhhhhhhhHHHHhHhccC-C----cchhHHHHHHHHHHHHHHH
Q 012732 375 YVVSTTAVAIIFPYFNQVLGV---------LGALNFWPLAIYFPVEMYFVQKKIG-A----WTRKWIVLRTFSFICLLVT 440 (457)
Q Consensus 375 ~~~~~~~ia~~ip~~~~v~~~---------~Ga~~~~~~~~ilP~l~~~~~~~~~-~----~~~~~~~~~~~~~~g~~~~ 440 (457)
.+..++++|..++.++-++.+ -||.++.-++++= |+.+-|.. + ..-.+|+-|+++++|+++.
T Consensus 162 ~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~ 237 (262)
T KOG4812|consen 162 IFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLF 237 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHH
Confidence 344455666666655544443 4788887777765 44443321 1 1224666678888888888
Q ss_pred HHHH--HHHHHHHHHhh
Q 012732 441 IIGL--IGSIEGLISAK 455 (457)
Q Consensus 441 v~g~--~~~i~~l~~~~ 455 (457)
+-++ |..|+.+-+.+
T Consensus 238 lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 238 LRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHhHHHHhhHHHHH
Confidence 7777 45666665543
No 107
>PRK12768 CysZ-like protein; Reviewed
Probab=43.65 E-value=1.5e+02 Score=27.32 Aligned_cols=22 Identities=9% Similarity=0.005 Sum_probs=16.6
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh
Q 012732 259 KTMKMASMISIFITTFFYLCCG 280 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~Y~~~g 280 (457)
.++++++..+......++...+
T Consensus 15 ~~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 15 PPMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888877777653
No 108
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=37.74 E-value=4.4e+02 Score=26.51 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=57.7
Q ss_pred hccccchhHHHHHh------hCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHH-HHHHHcCCcchhhhH
Q 012732 37 IGSGVLSLAWSTAQ------LGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYID-AVRLNLGKTQTWFCG 109 (457)
Q Consensus 37 iG~GiL~lP~af~~------~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~-l~~~~~Gk~~~~~~~ 109 (457)
.|.|.-.+..+-++ =|.+..+-.++=.-++|..|+..+.-+-...... +.+-.++.+ --+..+|.++.+++.
T Consensus 234 AG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~-~~~g~~l~~~Af~~~~g~~g~~~v~ 312 (416)
T PF01235_consen 234 AGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGS-GLEGAALTQAAFSTVLGSWGPYFVA 312 (416)
T ss_pred CCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCC-cchHHHHHHHHHHHhhhhhHHHHHH
Confidence 44554444444332 3555434444434445556666655432111111 111112222 223347888999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHH
Q 012732 110 LLQNLTFYGTAVAYVITTSTSMRAIQ 135 (457)
Q Consensus 110 ~~~~~~~~g~~~~y~i~~~~~l~~~~ 135 (457)
+++.+..+.+.+++....-+.+..++
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999988887
No 109
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=35.12 E-value=3.5e+02 Score=28.08 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=39.5
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 012732 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQK 136 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 136 (457)
...++-...+||++......+..+..+..+++-++..++....+-.
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 6667778889999999899999999999999999999988877654
No 110
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=35.06 E-value=2.7e+02 Score=28.81 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHH
Q 012732 112 QNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYS 191 (457)
Q Consensus 112 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~~~~ 191 (457)
........+..+.+...|+....++...... .+.+...-+..|.++.+++...+.+...++.++..+.+...= +..+
T Consensus 407 ~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~--~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~alP-F~~v 483 (537)
T COG1292 407 TSLLALLVIAIFFVTSADSGSYVLAMISSRG--GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITALP-FSLV 483 (537)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcc-HHHH
Confidence 3444556667788888999888887654433 222333445566666666655555566677777666555421 2223
Q ss_pred HHHHHHHHHHHHHhc
Q 012732 192 FIGFGLGFAKVIENG 206 (457)
Q Consensus 192 ~i~~~~~~~~~~~~~ 206 (457)
.+++..++++....+
T Consensus 484 ll~~~~sl~k~l~~d 498 (537)
T COG1292 484 LLVMMFSLIKDLKQD 498 (537)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344455666665544
No 111
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=31.76 E-value=3.8e+02 Score=27.62 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHH
Q 012732 53 WIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMR 132 (457)
Q Consensus 53 ~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 132 (457)
.++....++-.+++.-++.++-.. +..+-.+. .=++.....+.-.-..=..-.........+..++++..|+..
T Consensus 341 ~~psl~~~~wf~ifGg~al~~~~~-----g~~~~~~~-~~~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~ 414 (485)
T PF02028_consen 341 LVPSLFCFLWFSIFGGYALYLQLS-----GAGDLAAA-NEQGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSAT 414 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----TSS-HHHH-HHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHCchHHhhHhh-----hhhhHHHH-hhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHH
Q ss_pred HHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012732 133 AIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIEN 205 (457)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~ 205 (457)
..+...+.+. ++++....+..|.++.+++...+.....++.++.++.++.+=.....++++...+....+|
T Consensus 415 ~~la~~s~~~--~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l~~d 485 (485)
T PF02028_consen 415 YVLAMLSSKG--DEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKALKED 485 (485)
T ss_dssp HHHHHHHCTT--TSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHcCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 112
>PRK09950 putative transporter; Provisional
Probab=30.81 E-value=3.9e+02 Score=27.67 Aligned_cols=71 Identities=7% Similarity=0.093 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcccccC-CCCCccccCCccchHhHHHHHHHhhcCCC-cCchhHHHHHHHH
Q 012732 115 TFYGTAVAYVITTSTSMRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPD-FHNMEWLSVIAAI 185 (457)
Q Consensus 115 ~~~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~v~~~l~~~~~-l~~l~~~s~~~~~ 185 (457)
.....+..+.++..|+-...+...+.+.+ ++++|....+..|.+..+.+...+..... ++.++.++.++.+
T Consensus 407 l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~al 479 (506)
T PRK09950 407 AYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTAL 479 (506)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 44455666788888888888776655432 12334445566776666666555554444 5555555555443
No 113
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=29.78 E-value=3.6e+02 Score=27.43 Aligned_cols=70 Identities=13% Similarity=0.121 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcccc-cCCCCCccccCCccchHhHHHHHHHhhcCCC-cCchhHHHHHHH
Q 012732 115 TFYGTAVAYVITTSTSMRAIQKSNCYH-REGHNAPCAYGDTKHMLLFGAVQVVMSQIPD-FHNMEWLSVIAA 184 (457)
Q Consensus 115 ~~~g~~~~y~i~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~-l~~l~~~s~~~~ 184 (457)
.....+..+.++..|+-...+...+.+ .++++++....+..|.++.+.+...+..... ++.++.++.++.
T Consensus 361 l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~a 432 (453)
T TIGR00842 361 LALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAA 432 (453)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334455567778888887777755432 2222234445666776666666555555544 655555555554
No 114
>PLN00151 potassium transporter; Provisional
Probab=28.65 E-value=8.3e+02 Score=26.99 Aligned_cols=77 Identities=14% Similarity=0.168 Sum_probs=39.6
Q ss_pred CCCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHH--H-----HHHHHHHHHHhhccCcc
Q 012732 170 IPDFHNMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKL--W-----LAFQALGDIAFAYPYSI 242 (457)
Q Consensus 170 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~faf~~~~ 242 (457)
+.....-+.-..++-+..+++..+. .+.+|+...+++.- ... .+|.... + +.+..+|-++.+..|..
T Consensus 288 ~Q~~GT~kVg~~FgPImllWFl~i~-~iGiynI~~~~p~V--l~A---lnP~Y~~~Ff~~~~~~gw~~LGgVvLciTGaE 361 (852)
T PLN00151 288 VQRFGTSKVGFAFGPALALWFCSLG-GIGIYNLVKYDSSV--FRA---FNPVYIYYFFKRNSTKAWSALGGCVLCATGSE 361 (852)
T ss_pred HHhccchhhhhhhccHHHHHHHHHH-HHHHHHHHhcCHHH--Hhh---hCHHHHHHHHHhCCCceEEEecceeeeeccch
Confidence 4445655666677777777665443 45677766653321 111 2221111 1 23345666666666665
Q ss_pred eehhhhccccCCC
Q 012732 243 ILLEIQDTLKSPP 255 (457)
Q Consensus 243 ~i~~i~~~m~~p~ 255 (457)
.+ +.+|.+=.
T Consensus 362 AL---fADLGHFg 371 (852)
T PLN00151 362 AM---FADLGYFS 371 (852)
T ss_pred hh---hcccCCCC
Confidence 43 45665543
No 115
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=26.43 E-value=2.6e+02 Score=26.44 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCC-hHHHHHHhhhhhcchhhhhhhhHHHHhHhccCCc
Q 012732 376 VVSTTAVAIIFPY-FNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAW 422 (457)
Q Consensus 376 ~~~~~~ia~~ip~-~~~v~~~~Ga~~~~~~~~ilP~l~~~~~~~~~~~ 422 (457)
-+..++.+...+. ++.+++-.|+.. +-.+++|++.|+.+.++.+.
T Consensus 117 Siss~iG~YiLapl~~~i~~~~gAai--la~iviP~~~~y~ln~~~~s 162 (299)
T PF05884_consen 117 SISSFIGGYILAPLFGIIFGPFGAAI--LAYIVIPLIAYYYLNKEDGS 162 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHH--HHHHHHHHHHHhhcccccCc
Confidence 3445666666554 677777777765 56778999999987665443
No 116
>PRK09928 choline transport protein BetT; Provisional
Probab=25.90 E-value=8.6e+02 Score=26.25 Aligned_cols=89 Identities=10% Similarity=0.046 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHhcccccCC-CCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHHHHHHHHHHH
Q 012732 115 TFYGTAVAYVITTSTSMRAIQKSNCYHREG-HNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAAIMSFAYSFI 193 (457)
Q Consensus 115 ~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~~~~~~~~~i 193 (457)
.....+..+.++..|+-...+...+.+..+ .+++..+.+..|.++.+++.+.+.....++.++..+.++.+=.. ++.+
T Consensus 414 l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf~-~I~l 492 (679)
T PRK09928 414 VATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFS-FVIF 492 (679)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-HHHH
Confidence 344455668888889888888877655331 22344466677777777776666666666666666655553322 2223
Q ss_pred HHHHHHHHHHH
Q 012732 194 GFGLGFAKVIE 204 (457)
Q Consensus 194 ~~~~~~~~~~~ 204 (457)
++..++++...
T Consensus 493 l~~~sl~k~l~ 503 (679)
T PRK09928 493 FVMAGLYKSLK 503 (679)
T ss_pred HHHHHHHHHHH
Confidence 33344555443
No 117
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=25.66 E-value=94 Score=20.24 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHhhhcccccccccc
Q 012732 262 KMASMISIFITTFFYLCCGCFGYAAFGND 290 (457)
Q Consensus 262 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (457)
-.+..+++.+..++.-+.|..-|.+||+.
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34566667777777777788888889865
No 118
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=23.73 E-value=5e+02 Score=26.41 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=40.4
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 012732 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKS 137 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 137 (457)
.+.+..++..+++...++.+......+++..+.+...++.+..+-.+
T Consensus 275 p~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~d 321 (478)
T PF00324_consen 275 PFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARD 321 (478)
T ss_pred chhhhhhhcccccccceecccchhhhhhhhhhhhcccceeehhhhhh
Confidence 56777888888999999999999999999999999999988777643
No 119
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=21.04 E-value=6.7e+02 Score=23.20 Aligned_cols=30 Identities=0% Similarity=0.181 Sum_probs=19.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012732 259 KTMKMASMISIFITTFFYLCCGCFGYAAFG 288 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (457)
+++++.+.+-..+..++|...-..+.-.++
T Consensus 24 P~lr~~~liPl~inllLf~~~l~~~~~~~~ 53 (251)
T PRK04949 24 PGLRRFVILPLLVNILLFGGAFWWLFTQLD 53 (251)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888877766333333333
No 120
>CHL00020 psbN photosystem II protein N
Probab=20.85 E-value=1.1e+02 Score=19.73 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhcccccccccc
Q 012732 264 ASMISIFITTFFYLCCGCFGYAAFGND 290 (457)
Q Consensus 264 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (457)
+...++.+..++.-+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 445566666666777777778888865
No 121
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=20.47 E-value=9.6e+02 Score=24.84 Aligned_cols=69 Identities=9% Similarity=0.103 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHhcccccC-CCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHH
Q 012732 116 FYGTAVAYVITTSTSMRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 184 (457)
Q Consensus 116 ~~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~ 184 (457)
....+..+.++..|+-...+...+.+.. +++++....+..|.++.+.+.+.+.+...++.++.++.++.
T Consensus 411 ~~il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~a 480 (504)
T PRK03356 411 FFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGG 480 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3444555778888887777776655432 12234445666777766666665555555555555555544
No 122
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=20.41 E-value=2.7e+02 Score=24.67 Aligned_cols=30 Identities=13% Similarity=0.150 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhcchhhhhhhhHHHHhHhcc
Q 012732 390 NQVLGVLGALNFWPLAIYFPVEMYFVQKKI 419 (457)
Q Consensus 390 ~~v~~~~Ga~~~~~~~~ilP~l~~~~~~~~ 419 (457)
+.-.-+.|++.+.-+..++|+...+..+|+
T Consensus 44 s~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~ 73 (195)
T PF05805_consen 44 SCEVWYFGGIIGGGLMVLLPAIVFLAAGKR 73 (195)
T ss_pred chhheecCccccchHHHHHHHHHHHHhCCC
Confidence 345556788888899999999999998776
No 123
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=20.25 E-value=6.9e+02 Score=23.06 Aligned_cols=30 Identities=7% Similarity=0.115 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHhhhcccccccchHHHH
Q 012732 305 YWLIDLANACIVLHLVGGYQIFSQPVFAFV 334 (457)
Q Consensus 305 ~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~ 334 (457)
+....-.++...+.+..+.|.....+-..+
T Consensus 76 E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi 105 (249)
T CHL00182 76 EYFFSSIKISFYTGLLISSPFIIYQIILFI 105 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778899999999999998665444333
Done!