BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012735
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 153/473 (32%), Positives = 245/473 (51%), Gaps = 37/473 (7%)
Query: 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFXXXXXXXX---------XXLTFH 58
+V+ P P+QGHI+P+ +LA +LH +GF IT ++T + F
Sbjct: 10 HVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFE 69
Query: 59 FIQENLSASEASTD---DLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLP 115
I + L+ E D D+ + L P+ + L +L P+ CL+SD +
Sbjct: 70 SIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMS 129
Query: 116 FTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKG------QEPVVELP 169
FT A+ +LP ++ + A S + F ERG P +D + V +P
Sbjct: 130 FTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIP 189
Query: 170 PLK---IKDL-PVINTRDP-ETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQF 224
LK +KD+ I T +P + + E + D + I+ NTF +LE + L
Sbjct: 190 GLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSS-- 247
Query: 225 SIP-IFPIGPFHICIPASP---------SSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAA 274
+IP I+PIGP + +P S+L +D C+ WL+ + P SV+YV+FGS
Sbjct: 248 TIPSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTV 307
Query: 275 VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQE 334
++ + LE AWGLANCK FLW++RP L G + S F + RG + W PQ +
Sbjct: 308 MTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRGLIASWCPQDK 365
Query: 335 VLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLK 394
VL HP++G F TH GWNST ESIC G+PM+C P F DQ + R++ + W++G++++ +K
Sbjct: 366 VLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVK 425
Query: 395 REEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447
REE+ K I V+ +G++++ + LK+KA + + G S+ ++N ++ +L
Sbjct: 426 REELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 110/363 (30%), Positives = 184/363 (50%), Gaps = 14/363 (3%)
Query: 89 FRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLL 148
F+ + + +A+ + I CL++DA F +A+ + + L T G S + L+
Sbjct: 103 FKHVIDEAVAETGKN-ITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLI 161
Query: 149 KER-GYFPIQDSKGQEPVVELPPLKIKDLPVINTRDPETLYE-IVNGMVDGAKVSSGIIW 206
+E+ G + D K + + P LK DLP +D + + +++ M ++ +
Sbjct: 162 REKTGSKEVHDVKSIDVLPGFPELKASDLPEGVIKDIDVPFATMLHKMGLELPRANAVAI 221
Query: 207 NTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIY 266
N+F + L +F + + +GPF++ +P ++ + C+ WLD+ SV+Y
Sbjct: 222 NSFATIHPLIENELNSKFKL-LLNVGPFNLT---TPQRKVSDEHGCLEWLDQHENSSVVY 277
Query: 267 VSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHL 326
+SFGS+ E +A L C PF+W R D E LP GF+E +G +
Sbjct: 278 ISFGSVVTPPPHELTALAESLEECGFPFIWSFR------GDPKEKLPKGFLERTKTKGKI 331
Query: 327 VKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVG 386
V WAPQ E+L H +VG F TH+GWNS LE I G+PMI P F DQ +N V ++G
Sbjct: 332 VAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIG 391
Query: 387 LQLENG-LKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTH 445
+ ++NG L +E I+K + M ++G +R +I +LKE A + +Q +S +L+
Sbjct: 392 VGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQI 451
Query: 446 ILS 448
+ S
Sbjct: 452 VTS 454
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/361 (28%), Positives = 190/361 (52%), Gaps = 17/361 (4%)
Query: 89 FRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLL 148
FR + +A+ P++CL++DA + F +A + + + T G +S +
Sbjct: 98 FRQGMVMAVAETGR-PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEI 156
Query: 149 KER-GYFPIQDSKGQ--EPVVELPPLKIKDLP--VINTRDPETLYEIVNGMVDGAKVSSG 203
+E+ G IQ + + + + ++ +DL ++ +++ M ++
Sbjct: 157 REKIGVSGIQGREDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATA 216
Query: 204 IIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKS 263
+ N+FE+L++S L+ + IGPF++ +P ++ C+ WL ++ P S
Sbjct: 217 VFINSFEELDDSLTNDLKSKLKT-YLNIGPFNLI---TPPPVVPNTTGCLQWLKERKPTS 272
Query: 264 VIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGR 323
V+Y+SFG++ AE + ++ L ++PF+W +R LP GF+E G
Sbjct: 273 VVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLR------DKARVHLPEGFLEKTRGY 326
Query: 324 GHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVW 383
G +V WAPQ EVLAH AVGAF TH GWNS ES+ G+P+IC P F DQ++N R V DV
Sbjct: 327 GMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVL 386
Query: 384 KVGLQLENGL-KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSL 442
++G+++E G+ + + +++ +++G+++R + L+E A+ + SS E+ +L
Sbjct: 387 EIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITL 446
Query: 443 V 443
V
Sbjct: 447 V 447
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 135/470 (28%), Positives = 229/470 (48%), Gaps = 39/470 (8%)
Query: 1 MDQRKGRRLVLFPLPLQGHISPMLQLAN-ILHSQGFTITII-------HTSFXXXXXXXX 52
M++ K + + P P GH+ P+++ A ++H G T+T + +
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 53 XXLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDA 112
++ F+ +S+ + + +SL T+ R + + P A L+ D
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFV-EGGRLPTA-LVVDL 118
Query: 113 MLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPVVELP--- 169
VA +P + A+ F P L E ++ EP++ LP
Sbjct: 119 FGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSCEFREL--TEPLM-LPGCV 175
Query: 170 PLKIKDL--PVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQF--S 225
P+ KD P + +D + + N K + GI+ NTF +LE +A+ L++
Sbjct: 176 PVAGKDFLDPAQDRKDDAYKWLLHN--TKRYKEAEGILVNTFFELEPNAIKALQEPGLDK 233
Query: 226 IPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAW 285
P++P+GP + I + T++ C+ WLD Q SV+YVSFGS ++ + E+A
Sbjct: 234 PPVYPVGPL-VNI-GKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELAL 291
Query: 286 GLANCKLPFLWVVRP--GLTRGS--------DCLEPLPSGFMEMVDGRGHLVK-WAPQQE 334
GLA+ + FLWV+R G+ S D L LP GF+E RG ++ WAPQ +
Sbjct: 292 GLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQ 351
Query: 335 VLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENG-- 392
VLAHP+ G F TH GWNSTLES+ GIP+I P + +QK+NA +S+ + L+ G
Sbjct: 352 VLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDD 411
Query: 393 --LKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESIN 440
++REE+ + ++ +M ++G+ +R+++ LKE A K +S ++++
Sbjct: 412 GLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALS 461
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 142 bits (357), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 131/477 (27%), Positives = 214/477 (44%), Gaps = 52/477 (10%)
Query: 2 DQRKGRRLVLFPLPLQGHISPMLQLANIL--HSQGFTITIIHTSFXXXXXXXXXXLTFHF 59
D K L+ P P GH++ L+ A +L H + IT+ F +
Sbjct: 5 DINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA 64
Query: 60 IQE-----NLSASEASTDDLVA---FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISD 111
Q +L E +L+ F L + L+P K + + L+ D
Sbjct: 65 SQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL---SNKVVGLVLD 121
Query: 112 AMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPL-LKERGYFPI-QDSKGQEPVVELP 169
V + +P + T S V F + L LK R + DS ++ +P
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 170 PLKIKDLPVINTRDPETLYEIVNGMVDGAKV------SSGIIWNTFEDLEESALATLRQQ 223
+ + V + P+ + G + K+ + GII NTF DLE+S++ L
Sbjct: 178 GISNQ---VPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 224 FSI--PIFPIGPFHICIPASPSSLLTQDQS--CIAWLDKQAPKSVIYVSFGSIA-AVSEA 278
PI+ +GP + + P+ L Q Q + WLD+Q KSV+++ FGS+ + +
Sbjct: 235 DEKIPPIYAVGPL-LDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 279 EFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEM--VDGRGHLVKWAPQQEVL 336
+ EIA GL + + FLW S + P GF+E ++G+G + WAPQ EVL
Sbjct: 294 QIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVL 346
Query: 337 AHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR- 395
AH A+G F +H GWNS LES+ G+P++ P + +Q++NA + W VGL L ++
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 396 ------EEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446
EEIEK ++ +M + + ++ +KE + ++ G SS S+ L+ I
Sbjct: 407 SDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 131/477 (27%), Positives = 214/477 (44%), Gaps = 52/477 (10%)
Query: 2 DQRKGRRLVLFPLPLQGHISPMLQLANIL--HSQGFTITIIHTSFXXXXXXXXXXLTFHF 59
D K L+ P P GH++ L+ A +L H + IT+ F +
Sbjct: 5 DINKNSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLA 64
Query: 60 IQE-----NLSASEASTDDLVA---FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISD 111
Q +L E +L+ F L + L+P K + + L+ D
Sbjct: 65 SQPQIQLIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTIL---SNKVVGLVLD 121
Query: 112 AMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPL-LKERGYFPI-QDSKGQEPVVELP 169
V + +P + T S V F + L LK R + DS ++ +P
Sbjct: 122 FFCVSMIDVGNEFGIPSYLFLT----SNVGFLSLMLSLKNRQIEEVFDDSDRDHQLLNIP 177
Query: 170 PLKIKDLPVINTRDPETLYEIVNGMVDGAKV------SSGIIWNTFEDLEESALATLRQQ 223
+ + V + P+ + G + K+ + GII NTF DLE+S++ L
Sbjct: 178 GISNQ---VPSNVLPDACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDH 234
Query: 224 FSI--PIFPIGPFHICIPASPSSLLTQDQS--CIAWLDKQAPKSVIYVSFGSIA-AVSEA 278
PI+ +GP + + P+ L Q Q + WLD+Q KSV+++ FGS+ + +
Sbjct: 235 DEKIPPIYAVGPL-LDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPS 293
Query: 279 EFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEM--VDGRGHLVKWAPQQEVL 336
+ EIA GL + + FLW S + P GF+E ++G+G + WAPQ EVL
Sbjct: 294 QIREIALGLKHSGVRFLW-------SNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVL 346
Query: 337 AHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR- 395
AH A+G F +H GWNS LES+ G+P++ P + +Q++NA + W VGL L ++
Sbjct: 347 AHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKG 406
Query: 396 ------EEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446
EEIEK ++ +M + + ++ +KE + ++ G SS S+ L+ I
Sbjct: 407 SDVVAAEEIEKGLKDLM--DKDSIVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 326 LVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVN 375
L KW PQ ++L HP AF TH G N E+I GIP + +P F DQ N
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 328 KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGL 387
+W PQ ++L AF TH G ST+E++ +PM+ +P +Q +NA + V L
Sbjct: 311 QWVPQLDILTK--ASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERI-----VEL 363
Query: 388 QLENGLKREEI--EKTIRRVMVEKQGEEIRSRIFRLKEK 424
L + R+++ EK V+ + R+ ++++
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQE 402
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 11/80 (13%)
Query: 328 KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGL 387
+W P VLAH A TH + LE+ G+P++ +P F + A V ++GL
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATEA--APSAERVIELGL 342
Query: 388 -------QLENGLKREEIEK 400
QLE RE +E+
Sbjct: 343 GSVLRPDQLEPASIREAVER 362
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 15/158 (9%)
Query: 254 AWLD-KQAPKSVIYVSFGSIAAVSEAEFLEIAW-GLANCKLPFLWVVRPGLTRGSDCLEP 311
AWL + + ++Y++ G+ + E L A GLA L P L
Sbjct: 233 AWLSSRDTARPLVYLTLGTSSG-GTVEVLRAAIDGLAGLDADVLVASGPSLDV------- 284
Query: 312 LPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTD 371
SG E V L W PQ +L H V H G +TL ++ G+P + P D
Sbjct: 285 --SGLGE-VPANVRLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGD 339
Query: 372 QKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEK 409
NA+ V+ L + + + + +R++ E+
Sbjct: 340 SFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEE 377
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 9/96 (9%)
Query: 329 WAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQ 388
W PQ +L + F TH G + E + PMI +P DQ NA + GL
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-----GLG 342
Query: 389 LENGLKREEIEKTIRR--VMVEKQGEEIRSRIFRLK 422
+ L EE + R + E+ R+ R++
Sbjct: 343 VARKLATEEATADLLRETALALVDDPEVARRLRRIQ 378
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 306 SDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMIC 365
+ L+PLP G + G+ L P +V+ H H G +TL + EG+P +
Sbjct: 276 AQTLQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVS 325
Query: 366 MPCFTDQKVNARYV 379
+P + +AR +
Sbjct: 326 VPVIAEVWDSARLL 339
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 306 SDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMIC 365
+ L+PLP G + G+ L P +V+ H H G +TL + EG+P +
Sbjct: 275 AQTLQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVS 324
Query: 366 MPCFTDQKVNARYV 379
+P + +AR +
Sbjct: 325 VPVIAEVWDSARLL 338
>pdb|1MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|1MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|1MPR|C Chain C, Maltoporin From Salmonella Typhimurium
pdb|2MPR|A Chain A, Maltoporin From Salmonella Typhimurium
pdb|2MPR|B Chain B, Maltoporin From Salmonella Typhimurium
pdb|2MPR|C Chain C, Maltoporin From Salmonella Typhimurium
Length = 427
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 328 KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKV--NARYVSDVWKV 385
+W + + PA+ F T+ W+ I +G + T+ + N+R SD W
Sbjct: 360 QWQAGDSIWSRPAIRIFATYAKWDEKWGYIKDGDNISRYAAATNSGISTNSRGDSDEWTF 419
Query: 386 GLQLE 390
G Q+E
Sbjct: 420 GAQME 424
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 328 KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVS 380
+W P +VL V TH G + E++ G P++ +P D + AR V
Sbjct: 303 RWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVD 353
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 328 KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVS 380
+W P +VL V TH G + E++ G P++ +P D + AR V
Sbjct: 303 RWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQSFDVQPXARRVD 353
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,002,855
Number of Sequences: 62578
Number of extensions: 520746
Number of successful extensions: 1229
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1198
Number of HSP's gapped (non-prelim): 25
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)