Query 012735
Match_columns 457
No_of_seqs 130 out of 1283
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 05:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012735.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012735hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 1.9E-66 4E-71 500.7 46.6 445 1-448 1-450 (451)
2 PLN02555 limonoid glucosyltran 100.0 2.6E-63 5.6E-68 480.4 43.3 439 4-450 5-471 (480)
3 PLN02562 UDP-glycosyltransfera 100.0 6.3E-63 1.4E-67 477.8 43.2 430 1-446 1-447 (448)
4 PLN02448 UDP-glycosyltransfera 100.0 1.6E-62 3.4E-67 478.9 42.2 431 2-448 6-457 (459)
5 PLN02670 transferase, transfer 100.0 1.7E-62 3.7E-67 472.9 41.0 437 1-450 1-467 (472)
6 PLN02173 UDP-glucosyl transfer 100.0 3.2E-62 6.9E-67 468.9 42.5 422 4-447 3-447 (449)
7 PLN02207 UDP-glycosyltransfera 100.0 1.2E-61 2.6E-66 466.6 43.2 439 6-451 3-468 (468)
8 PLN02992 coniferyl-alcohol glu 100.0 9.1E-62 2E-66 468.2 42.0 430 5-448 4-469 (481)
9 PLN02210 UDP-glucosyl transfer 100.0 2.6E-61 5.7E-66 466.9 41.1 424 5-447 7-454 (456)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 6.2E-61 1.3E-65 465.6 41.9 438 4-450 7-473 (477)
11 PLN03007 UDP-glucosyltransfera 100.0 8.3E-61 1.8E-65 469.1 43.1 439 1-449 1-481 (482)
12 PLN02554 UDP-glycosyltransfera 100.0 1.1E-60 2.4E-65 467.5 42.4 431 6-449 2-479 (481)
13 PLN02764 glycosyltransferase f 100.0 1.8E-60 4E-65 455.1 41.3 422 4-454 3-451 (453)
14 PLN03004 UDP-glycosyltransfera 100.0 1.5E-60 3.3E-65 457.6 39.6 425 6-437 3-450 (451)
15 PLN00164 glucosyltransferase; 100.0 4.1E-60 8.9E-65 461.5 43.1 437 6-451 3-476 (480)
16 PLN02208 glycosyltransferase f 100.0 3.2E-60 7E-65 456.2 41.3 418 5-449 3-440 (442)
17 PLN03015 UDP-glucosyl transfer 100.0 9.2E-60 2E-64 451.5 41.7 431 6-446 3-466 (470)
18 PLN02152 indole-3-acetate beta 100.0 8.1E-60 1.8E-64 453.1 41.3 424 7-446 4-454 (455)
19 PLN02534 UDP-glycosyltransfera 100.0 9.6E-60 2.1E-64 456.1 41.5 440 4-451 6-489 (491)
20 PLN00414 glycosyltransferase f 100.0 9.4E-60 2E-64 453.5 40.8 419 5-450 3-442 (446)
21 PLN02167 UDP-glycosyltransfera 100.0 1.4E-58 3.1E-63 451.9 42.2 440 5-450 2-474 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 9.8E-53 2.1E-57 412.5 25.6 410 6-447 20-466 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 9.3E-55 2E-59 435.1 -10.4 384 8-428 2-426 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 1.1E-43 2.3E-48 344.4 28.4 378 12-447 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.1E-43 2.5E-48 345.9 22.9 374 7-443 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 9.7E-43 2.1E-47 333.0 16.0 391 6-450 1-403 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 2E-40 4.3E-45 332.0 22.4 393 6-427 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 4.7E-26 1E-30 215.4 27.2 337 7-448 2-351 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 5.7E-26 1.2E-30 214.4 21.4 305 7-405 1-317 (318)
30 TIGR00661 MJ1255 conserved hyp 99.9 2.1E-22 4.6E-27 189.4 21.3 304 8-408 1-314 (321)
31 COG0707 MurG UDP-N-acetylgluco 99.9 2.2E-21 4.8E-26 181.2 27.5 307 7-408 1-324 (357)
32 PRK00726 murG undecaprenyldiph 99.9 7.3E-20 1.6E-24 175.6 25.0 342 7-447 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 2.3E-18 5E-23 164.9 23.4 323 8-422 1-335 (350)
34 COG4671 Predicted glycosyl tra 99.8 2.8E-16 6.1E-21 139.7 22.2 326 5-407 8-364 (400)
35 TIGR01133 murG undecaprenyldip 99.8 1.9E-16 4.1E-21 151.5 23.2 316 7-420 1-330 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 8.7E-17 1.9E-21 154.6 20.8 347 7-444 6-384 (385)
37 PRK13609 diacylglycerol glucos 99.7 2.4E-15 5.2E-20 145.6 19.9 168 261-451 201-374 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.7 1.2E-14 2.6E-19 140.8 20.5 347 6-448 1-377 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 1.6E-14 3.4E-19 132.5 14.8 103 263-378 171-278 (279)
40 PRK13608 diacylglycerol glucos 99.6 3.9E-12 8.4E-17 123.2 26.8 165 260-448 200-371 (391)
41 PF04101 Glyco_tran_28_C: Glyc 99.5 5.5E-16 1.2E-20 131.5 -3.5 135 264-408 1-144 (167)
42 TIGR03492 conserved hypothetic 99.5 1.5E-11 3.1E-16 118.6 25.8 352 14-444 4-394 (396)
43 PLN02605 monogalactosyldiacylg 99.5 1.1E-11 2.3E-16 119.9 23.9 81 322-408 265-347 (382)
44 cd03814 GT1_like_2 This family 99.5 1.9E-10 4.1E-15 110.4 30.5 111 321-446 246-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 3E-10 6.5E-15 112.8 31.2 154 264-444 264-429 (465)
46 COG3980 spsG Spore coat polysa 99.3 1.1E-10 2.3E-15 101.4 18.0 146 263-425 159-307 (318)
47 PF03033 Glyco_transf_28: Glyc 99.3 6.3E-14 1.4E-18 115.1 -3.0 125 9-136 1-132 (139)
48 cd03818 GT1_ExpC_like This fam 99.3 5.7E-09 1.2E-13 101.7 31.1 79 322-408 281-366 (396)
49 cd03823 GT1_ExpE7_like This fa 99.3 1.8E-09 4E-14 103.2 25.9 130 261-408 189-329 (359)
50 cd03816 GT1_ALG1_like This fam 99.3 2.3E-09 5.1E-14 104.7 25.0 343 5-422 2-399 (415)
51 PRK10307 putative glycosyl tra 99.3 1.9E-08 4.1E-13 98.6 30.7 163 263-449 229-408 (412)
52 cd04962 GT1_like_5 This family 99.3 9E-09 2E-13 99.3 28.0 112 322-448 253-370 (371)
53 cd03794 GT1_wbuB_like This fam 99.2 3.9E-09 8.4E-14 102.0 25.0 79 322-408 275-365 (394)
54 cd03800 GT1_Sucrose_synthase T 99.2 1.2E-08 2.6E-13 99.4 27.6 79 322-408 283-368 (398)
55 cd03817 GT1_UGDG_like This fam 99.2 2.3E-08 5.1E-13 96.0 28.9 95 321-424 258-360 (374)
56 cd03801 GT1_YqgM_like This fam 99.2 1.9E-08 4.1E-13 96.2 28.0 111 321-446 255-373 (374)
57 cd03808 GT1_cap1E_like This fa 99.2 3.8E-08 8.2E-13 93.8 29.7 312 8-408 1-329 (359)
58 PRK05749 3-deoxy-D-manno-octul 99.1 8.5E-09 1.8E-13 101.4 21.6 104 333-448 314-423 (425)
59 TIGR03449 mycothiol_MshA UDP-N 99.1 1.5E-07 3.3E-12 92.0 30.2 355 17-448 20-401 (405)
60 cd03798 GT1_wlbH_like This fam 99.1 1.6E-07 3.4E-12 90.1 29.8 158 262-448 201-376 (377)
61 cd03825 GT1_wcfI_like This fam 99.1 7.4E-08 1.6E-12 92.6 26.3 113 321-448 243-364 (365)
62 cd03820 GT1_amsD_like This fam 99.1 1.9E-07 4E-12 88.6 28.6 96 322-425 235-337 (348)
63 PF04007 DUF354: Protein of un 99.1 4.2E-08 9.2E-13 91.1 21.3 302 7-406 1-308 (335)
64 cd03805 GT1_ALG2_like This fam 99.1 2.9E-07 6.3E-12 89.5 28.3 91 321-420 279-377 (392)
65 cd03795 GT1_like_4 This family 99.0 3E-07 6.5E-12 88.1 27.4 143 263-421 191-346 (357)
66 cd05844 GT1_like_7 Glycosyltra 99.0 2.2E-07 4.8E-12 89.4 25.8 108 321-443 244-365 (367)
67 cd03822 GT1_ecORF704_like This 99.0 3.8E-07 8.3E-12 87.5 26.9 108 322-446 247-365 (366)
68 TIGR02472 sucr_P_syn_N sucrose 99.0 4.7E-07 1E-11 89.3 27.2 162 264-446 249-438 (439)
69 cd03796 GT1_PIG-A_like This fa 99.0 1.1E-06 2.3E-11 85.8 29.3 112 322-449 250-368 (398)
70 TIGR02468 sucrsPsyn_pln sucros 99.0 9E-07 1.9E-11 92.7 29.8 394 5-449 168-671 (1050)
71 cd03821 GT1_Bme6_like This fam 99.0 6.8E-07 1.5E-11 85.8 27.7 106 321-443 261-374 (375)
72 PRK14089 ipid-A-disaccharide s 99.0 9.7E-08 2.1E-12 89.5 20.5 158 263-444 168-346 (347)
73 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 1.7E-07 3.7E-12 90.2 20.6 130 261-408 197-337 (363)
74 cd03802 GT1_AviGT4_like This f 98.9 5.5E-07 1.2E-11 85.5 22.8 154 265-446 173-334 (335)
75 cd03819 GT1_WavL_like This fam 98.9 2.2E-06 4.8E-11 82.1 26.1 94 322-423 246-347 (355)
76 cd04951 GT1_WbdM_like This fam 98.9 2.2E-06 4.7E-11 82.2 25.6 158 262-447 187-359 (360)
77 PRK15427 colanic acid biosynth 98.8 4.6E-06 1E-10 81.3 27.7 161 263-448 222-405 (406)
78 cd04955 GT1_like_6 This family 98.8 1.6E-06 3.5E-11 83.3 24.4 156 266-446 196-362 (363)
79 PLN02275 transferase, transfer 98.8 4.2E-06 9E-11 80.7 27.1 320 6-406 4-371 (371)
80 cd03799 GT1_amsK_like This is 98.8 2.6E-06 5.7E-11 81.5 25.8 80 321-408 235-327 (355)
81 TIGR02149 glgA_Coryne glycogen 98.8 5.1E-06 1.1E-10 80.7 27.8 164 263-448 201-386 (388)
82 TIGR02470 sucr_synth sucrose s 98.8 1.5E-05 3.4E-10 81.8 30.8 90 350-451 657-750 (784)
83 cd03811 GT1_WabH_like This fam 98.8 1.7E-06 3.7E-11 82.1 22.8 130 261-408 187-332 (353)
84 TIGR00236 wecB UDP-N-acetylglu 98.8 2.1E-07 4.6E-12 89.6 16.4 158 262-449 197-364 (365)
85 cd03807 GT1_WbnK_like This fam 98.8 1.1E-05 2.4E-10 77.0 28.1 109 322-446 251-364 (365)
86 PLN02846 digalactosyldiacylgly 98.8 2.2E-06 4.8E-11 83.3 22.7 151 265-449 230-392 (462)
87 PLN00142 sucrose synthase 98.8 1.4E-06 3E-11 89.4 22.2 96 344-451 670-773 (815)
88 cd03809 GT1_mtfB_like This fam 98.7 1.8E-06 4E-11 82.7 20.8 106 321-443 252-364 (365)
89 PRK09922 UDP-D-galactose:(gluc 98.7 3.8E-06 8.1E-11 80.7 22.1 130 263-409 180-325 (359)
90 TIGR03087 stp1 sugar transfera 98.7 4.8E-06 1.1E-10 81.1 23.0 110 322-447 280-395 (397)
91 TIGR03088 stp2 sugar transfera 98.6 2.3E-05 4.9E-10 75.8 25.0 112 323-448 256-372 (374)
92 PRK15179 Vi polysaccharide bio 98.6 7.7E-05 1.7E-09 76.6 28.0 160 263-447 517-692 (694)
93 KOG3349 Predicted glycosyltran 98.5 3.5E-07 7.6E-12 71.8 7.5 113 263-385 4-128 (170)
94 cd03804 GT1_wbaZ_like This fam 98.5 6.9E-06 1.5E-10 78.6 18.0 124 265-408 197-326 (351)
95 COG1519 KdtA 3-deoxy-D-manno-o 98.5 4.3E-05 9.3E-10 71.5 21.9 328 14-448 56-417 (419)
96 cd03806 GT1_ALG11_like This fa 98.5 1.6E-05 3.5E-10 77.8 20.2 79 321-408 304-392 (419)
97 PRK01021 lpxB lipid-A-disaccha 98.5 5.7E-05 1.2E-09 74.8 23.1 345 7-446 227-603 (608)
98 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 4.2E-06 9E-11 80.1 14.8 130 262-407 201-338 (365)
99 PRK00654 glgA glycogen synthas 98.4 2.7E-05 5.9E-10 77.4 19.6 166 263-448 282-462 (466)
100 cd03812 GT1_CapH_like This fam 98.4 0.00012 2.7E-09 70.0 23.7 78 322-408 249-331 (358)
101 cd03792 GT1_Trehalose_phosphor 98.4 6E-05 1.3E-09 72.8 21.4 110 322-448 252-371 (372)
102 TIGR02095 glgA glycogen/starch 98.3 0.00017 3.6E-09 72.1 22.4 159 263-448 291-472 (473)
103 PLN02316 synthase/transferase 98.3 0.00042 9E-09 73.4 25.6 118 322-448 900-1033(1036)
104 PLN02949 transferase, transfer 98.3 0.00022 4.8E-09 70.3 22.6 112 321-448 334-456 (463)
105 COG0763 LpxB Lipid A disacchar 98.3 0.00027 5.9E-09 65.6 20.5 347 7-447 2-380 (381)
106 cd03791 GT1_Glycogen_synthase_ 98.2 0.0002 4.3E-09 71.7 21.5 165 263-447 296-475 (476)
107 PF02684 LpxB: Lipid-A-disacch 98.2 0.00028 6E-09 66.9 20.1 337 9-438 1-367 (373)
108 PF02350 Epimerase_2: UDP-N-ac 98.2 1.2E-05 2.5E-10 76.2 10.7 158 260-446 178-345 (346)
109 PRK10125 putative glycosyl tra 98.2 0.0016 3.5E-08 63.4 25.7 153 265-448 243-404 (405)
110 cd04950 GT1_like_1 Glycosyltra 98.2 0.0024 5.2E-08 61.6 26.7 109 322-449 254-372 (373)
111 PLN02501 digalactosyldiacylgly 98.2 0.00025 5.4E-09 71.2 19.3 148 263-446 548-707 (794)
112 PF13844 Glyco_transf_41: Glyc 98.1 7E-05 1.5E-09 72.4 13.9 172 260-449 282-467 (468)
113 COG0381 WecB UDP-N-acetylgluco 98.1 0.00014 3E-09 67.7 15.1 162 261-450 203-372 (383)
114 PRK15484 lipopolysaccharide 1, 98.0 0.00018 3.9E-09 69.6 15.6 115 320-448 255-377 (380)
115 TIGR02918 accessory Sec system 98.0 0.0011 2.4E-08 66.1 20.9 161 263-448 319-499 (500)
116 PRK10017 colanic acid biosynth 98.0 0.015 3.3E-07 56.5 27.5 178 254-447 226-423 (426)
117 cd03813 GT1_like_3 This family 98.0 0.0039 8.4E-08 62.3 24.0 110 322-445 354-473 (475)
118 cd04949 GT1_gtfA_like This fam 97.9 0.00094 2E-08 64.4 18.2 100 322-426 261-364 (372)
119 COG5017 Uncharacterized conser 97.9 7.6E-05 1.7E-09 57.7 8.0 124 265-407 2-141 (161)
120 cd04946 GT1_AmsK_like This fam 97.8 0.00047 1E-08 67.4 14.4 160 262-443 229-406 (407)
121 PRK15490 Vi polysaccharide bio 97.8 0.01 2.2E-07 58.9 23.1 114 322-449 455-576 (578)
122 COG1817 Uncharacterized protei 97.6 0.013 2.9E-07 52.7 18.5 104 17-136 10-115 (346)
123 PF00534 Glycos_transf_1: Glyc 97.5 0.0011 2.4E-08 56.1 10.5 132 261-408 13-158 (172)
124 cd01635 Glycosyltransferase_GT 97.4 0.012 2.5E-07 51.9 16.5 70 16-134 12-84 (229)
125 PRK09814 beta-1,6-galactofuran 97.4 0.00071 1.5E-08 64.2 8.7 110 322-445 207-332 (333)
126 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0005 1.1E-08 55.6 4.9 127 264-408 3-135 (135)
127 PF06722 DUF1205: Protein of u 97.2 0.00077 1.7E-08 50.4 5.3 64 250-316 28-96 (97)
128 TIGR02193 heptsyl_trn_I lipopo 97.0 0.022 4.8E-07 53.6 14.9 131 261-406 178-319 (319)
129 COG3914 Spy Predicted O-linked 96.9 0.027 5.9E-07 55.0 14.2 104 260-373 427-542 (620)
130 KOG4626 O-linked N-acetylgluco 96.9 0.021 4.7E-07 56.0 12.8 137 260-408 756-904 (966)
131 PHA01633 putative glycosyl tra 96.8 0.0045 9.8E-08 58.0 7.7 101 322-426 201-325 (335)
132 PF13477 Glyco_trans_4_2: Glyc 96.8 0.017 3.7E-07 46.8 10.2 104 8-134 1-108 (139)
133 PF06258 Mito_fiss_Elm1: Mitoc 96.6 0.084 1.8E-06 49.1 14.8 58 331-391 221-282 (311)
134 PHA01630 putative group 1 glyc 96.4 0.12 2.7E-06 48.7 14.7 113 328-449 196-331 (331)
135 PRK10422 lipopolysaccharide co 96.1 0.5 1.1E-05 45.2 17.1 110 1-130 1-113 (352)
136 PRK14098 glycogen synthase; Pr 95.9 0.055 1.2E-06 54.1 9.9 164 264-449 308-486 (489)
137 TIGR02201 heptsyl_trn_III lipo 95.6 2.2 4.8E-05 40.6 19.9 105 8-130 1-108 (344)
138 PF13579 Glyco_trans_4_4: Glyc 95.5 0.025 5.3E-07 46.7 5.2 96 22-133 6-104 (160)
139 PF13524 Glyco_trans_1_2: Glyc 95.5 0.12 2.7E-06 38.3 8.3 81 347-443 9-91 (92)
140 cd03789 GT1_LPS_heptosyltransf 95.5 0.82 1.8E-05 42.0 15.5 102 8-130 1-105 (279)
141 COG0859 RfaF ADP-heptose:LPS h 95.3 0.31 6.8E-06 46.1 12.5 105 6-130 1-107 (334)
142 TIGR02195 heptsyl_trn_II lipop 95.1 0.95 2.1E-05 42.9 15.2 102 8-130 1-105 (334)
143 PF08660 Alg14: Oligosaccharid 94.9 0.085 1.9E-06 44.3 6.5 110 13-134 4-130 (170)
144 PRK10964 ADP-heptose:LPS hepto 94.8 0.73 1.6E-05 43.4 13.3 131 263-407 179-321 (322)
145 COG3660 Predicted nucleoside-d 94.7 1.6 3.5E-05 38.7 13.5 72 283-366 189-271 (329)
146 PF13439 Glyco_transf_4: Glyco 94.0 0.97 2.1E-05 37.7 11.3 29 16-44 11-39 (177)
147 PF12000 Glyco_trans_4_3: Gkyc 93.8 0.79 1.7E-05 38.4 9.8 94 32-132 1-95 (171)
148 PF01975 SurE: Survival protei 93.5 0.58 1.3E-05 40.3 8.7 113 7-134 1-134 (196)
149 PLN02939 transferase, transfer 93.4 2 4.3E-05 45.9 13.9 115 322-449 837-967 (977)
150 COG4370 Uncharacterized protei 92.9 7.1 0.00015 35.6 20.8 107 328-450 301-411 (412)
151 PRK13932 stationary phase surv 90.7 6.7 0.00015 35.3 12.3 113 4-133 3-133 (257)
152 PRK14099 glycogen synthase; Pr 90.1 2.8 6.1E-05 42.0 10.6 100 337-449 368-479 (485)
153 TIGR02400 trehalose_OtsA alpha 89.3 2 4.3E-05 42.6 8.8 104 328-448 342-456 (456)
154 cd03788 GT1_TPS Trehalose-6-Ph 89.1 2.6 5.7E-05 41.9 9.5 103 327-446 346-459 (460)
155 COG0438 RfaG Glycosyltransfera 88.9 19 0.00041 33.2 15.1 112 322-448 257-376 (381)
156 PLN03063 alpha,alpha-trehalose 87.9 4.9 0.00011 42.9 11.0 99 334-449 371-478 (797)
157 PF12146 Hydrolase_4: Putative 87.6 1.5 3.4E-05 31.4 5.0 41 3-43 11-52 (79)
158 PRK10916 ADP-heptose:LPS hepto 86.8 4.2 9.2E-05 38.7 9.1 103 7-130 1-106 (348)
159 PRK13933 stationary phase surv 86.0 20 0.00044 32.2 12.2 24 23-47 16-39 (253)
160 TIGR02919 accessory Sec system 85.4 15 0.00033 36.1 12.2 133 260-421 281-422 (438)
161 COG1618 Predicted nucleotide k 85.1 2.1 4.4E-05 35.2 5.0 58 4-62 3-60 (179)
162 KOG1387 Glycosyltransferase [C 84.7 35 0.00076 32.0 14.0 271 104-426 150-444 (465)
163 PF04127 DFP: DNA / pantothena 84.0 1.7 3.6E-05 37.1 4.3 53 6-61 3-67 (185)
164 PRK02797 4-alpha-L-fucosyltran 84.0 5.5 0.00012 36.6 7.7 80 322-406 206-292 (322)
165 TIGR00087 surE 5'/3'-nucleotid 83.7 12 0.00026 33.5 9.7 96 22-134 15-129 (244)
166 PRK05986 cob(I)alamin adenolsy 83.5 6.7 0.00014 33.5 7.7 99 6-115 22-126 (191)
167 PRK02261 methylaspartate mutas 83.1 2.6 5.7E-05 33.9 4.9 39 5-43 2-40 (137)
168 PF02951 GSH-S_N: Prokaryotic 82.9 2.4 5.2E-05 33.1 4.4 37 7-43 1-40 (119)
169 PF00731 AIRC: AIR carboxylase 82.0 22 0.00048 29.0 9.8 135 264-426 2-147 (150)
170 PF02441 Flavoprotein: Flavopr 81.9 2.4 5.1E-05 33.8 4.3 36 7-43 1-36 (129)
171 PRK13935 stationary phase surv 81.6 31 0.00067 31.0 11.5 39 7-47 1-39 (253)
172 cd00561 CobA_CobO_BtuR ATP:cor 81.3 15 0.00032 30.4 8.8 98 7-115 3-106 (159)
173 TIGR00715 precor6x_red precorr 80.7 11 0.00023 34.2 8.4 32 7-43 1-32 (256)
174 COG0496 SurE Predicted acid ph 80.4 10 0.00023 33.8 8.0 98 19-134 12-126 (252)
175 COG1703 ArgK Putative periplas 80.4 10 0.00023 34.7 8.0 39 5-43 50-88 (323)
176 PRK00346 surE 5'(3')-nucleotid 79.9 44 0.00095 30.1 11.9 95 21-134 14-125 (250)
177 PRK08305 spoVFB dipicolinate s 79.8 2.7 5.8E-05 36.1 4.1 39 5-43 4-42 (196)
178 PRK13934 stationary phase surv 79.4 42 0.0009 30.4 11.6 39 7-47 1-39 (266)
179 cd02067 B12-binding B12 bindin 79.2 3.1 6.7E-05 32.5 4.0 36 8-43 1-36 (119)
180 COG2910 Putative NADH-flavin r 79.2 3.8 8.3E-05 34.4 4.6 33 7-43 1-33 (211)
181 COG0003 ArsA Predicted ATPase 77.5 21 0.00046 33.4 9.5 38 7-44 2-40 (322)
182 PF05159 Capsule_synth: Capsul 77.0 11 0.00024 34.4 7.6 41 325-368 186-226 (269)
183 TIGR00708 cobA cob(I)alamin ad 76.9 14 0.00031 31.0 7.4 97 6-114 5-107 (173)
184 cd03793 GT1_Glycogen_synthase_ 75.8 13 0.00027 37.8 7.9 91 332-425 468-571 (590)
185 cd00550 ArsA_ATPase Oxyanion-t 75.8 14 0.0003 33.4 7.8 36 9-44 3-38 (254)
186 PF04464 Glyphos_transf: CDP-G 75.0 2.3 4.9E-05 40.9 2.7 110 322-443 252-368 (369)
187 KOG0853 Glycosyltransferase [C 74.8 3.5 7.5E-05 40.6 3.7 88 352-450 381-469 (495)
188 PRK09620 hypothetical protein; 74.8 11 0.00023 33.5 6.6 38 6-43 3-52 (229)
189 PRK13982 bifunctional SbtC-lik 74.5 8.2 0.00018 38.2 6.3 53 5-60 255-319 (475)
190 TIGR03713 acc_sec_asp1 accesso 73.6 5.8 0.00013 40.0 5.2 92 322-426 409-507 (519)
191 COG2894 MinD Septum formation 73.4 20 0.00043 31.3 7.4 37 8-44 3-41 (272)
192 COG4394 Uncharacterized protei 72.9 58 0.0013 29.6 10.4 109 325-449 241-368 (370)
193 PF10649 DUF2478: Protein of u 72.3 55 0.0012 27.1 9.9 114 11-137 3-135 (159)
194 TIGR02852 spore_dpaB dipicolin 71.9 5.3 0.00011 34.1 3.8 37 7-43 1-37 (187)
195 TIGR02015 BchY chlorophyllide 71.6 33 0.00071 33.7 9.7 95 7-132 286-380 (422)
196 COG2861 Uncharacterized protei 71.3 26 0.00056 30.9 7.7 48 78-131 129-179 (250)
197 PF07429 Glyco_transf_56: 4-al 71.2 54 0.0012 30.9 10.3 81 322-407 245-332 (360)
198 PRK13931 stationary phase surv 71.0 41 0.00088 30.5 9.4 95 22-133 15-129 (261)
199 PRK05920 aromatic acid decarbo 70.9 6.3 0.00014 34.1 4.1 38 5-43 2-39 (204)
200 PRK05632 phosphate acetyltrans 70.6 69 0.0015 33.8 12.4 102 8-135 4-116 (684)
201 cd01980 Chlide_reductase_Y Chl 68.4 46 0.00099 32.6 10.0 27 104-133 350-376 (416)
202 PF09314 DUF1972: Domain of un 67.9 24 0.00051 30.1 6.8 55 7-61 2-62 (185)
203 cd01965 Nitrogenase_MoFe_beta_ 67.8 17 0.00037 35.8 6.9 27 104-133 371-397 (428)
204 TIGR02370 pyl_corrinoid methyl 67.6 12 0.00026 32.3 5.2 40 4-43 82-121 (197)
205 PF02310 B12-binding: B12 bind 66.8 12 0.00027 29.0 4.8 36 8-43 2-37 (121)
206 cd02070 corrinoid_protein_B12- 66.3 13 0.00029 32.2 5.2 39 5-43 81-119 (201)
207 PF06792 UPF0261: Uncharacteri 64.9 1.4E+02 0.003 28.9 12.2 96 260-371 183-281 (403)
208 PRK14501 putative bifunctional 64.3 16 0.00035 38.8 6.4 111 326-449 346-463 (726)
209 cd01974 Nitrogenase_MoFe_beta 64.3 79 0.0017 31.2 10.8 27 104-133 377-403 (435)
210 PF02606 LpxK: Tetraacyldisacc 63.9 47 0.001 31.3 8.7 102 12-125 43-148 (326)
211 PRK14099 glycogen synthase; Pr 63.5 13 0.00028 37.3 5.3 41 5-45 2-48 (485)
212 COG2185 Sbm Methylmalonyl-CoA 63.5 12 0.00026 30.1 4.0 38 5-42 11-48 (143)
213 PRK12342 hypothetical protein; 63.3 13 0.00029 33.4 4.7 31 104-134 109-145 (254)
214 COG1797 CobB Cobyrinic acid a, 63.1 12 0.00025 36.2 4.5 33 8-40 2-35 (451)
215 COG1663 LpxK Tetraacyldisaccha 62.8 30 0.00064 32.4 6.9 33 12-44 55-87 (336)
216 KOG3339 Predicted glycosyltran 62.6 34 0.00074 28.8 6.5 24 10-33 41-64 (211)
217 PRK01077 cobyrinic acid a,c-di 62.4 38 0.00083 33.6 8.3 35 8-42 5-40 (451)
218 PRK06249 2-dehydropantoate 2-r 62.4 11 0.00024 35.3 4.3 37 1-43 1-37 (313)
219 PRK13789 phosphoribosylamine-- 62.4 28 0.0006 34.2 7.2 36 5-45 3-38 (426)
220 COG1484 DnaC DNA replication p 62.3 15 0.00033 33.1 5.0 38 6-43 105-142 (254)
221 PRK06732 phosphopantothenate-- 62.3 11 0.00023 33.5 4.0 21 23-43 29-49 (229)
222 PF01210 NAD_Gly3P_dh_N: NAD-d 61.7 6.3 0.00014 32.6 2.3 31 8-43 1-31 (157)
223 smart00851 MGS MGS-like domain 61.2 25 0.00053 25.8 5.2 19 23-42 2-20 (90)
224 PRK07313 phosphopantothenoylcy 61.2 12 0.00026 31.9 3.9 37 7-44 2-38 (182)
225 PF00551 Formyl_trans_N: Formy 60.9 30 0.00064 29.4 6.3 33 7-42 1-35 (181)
226 PRK14098 glycogen synthase; Pr 60.8 18 0.00039 36.3 5.7 42 4-45 3-50 (489)
227 PF06564 YhjQ: YhjQ protein; 60.0 1E+02 0.0023 27.5 9.7 36 8-43 3-39 (243)
228 PRK00784 cobyric acid synthase 59.2 74 0.0016 32.0 9.7 35 8-42 4-39 (488)
229 PF02572 CobA_CobO_BtuR: ATP:c 59.1 8.5 0.00018 32.3 2.6 97 5-114 2-106 (172)
230 COG2109 BtuR ATP:corrinoid ade 59.0 63 0.0014 27.5 7.5 97 6-115 28-133 (198)
231 PLN02939 transferase, transfer 58.4 20 0.00043 38.7 5.7 42 4-45 479-526 (977)
232 TIGR02113 coaC_strep phosphopa 58.0 16 0.00036 30.8 4.2 36 7-43 1-36 (177)
233 PRK12475 thiamine/molybdopteri 57.2 10 0.00023 35.8 3.2 33 6-43 24-57 (338)
234 TIGR01285 nifN nitrogenase mol 57.1 64 0.0014 31.8 8.7 88 6-132 311-398 (432)
235 COG0801 FolK 7,8-dihydro-6-hyd 57.0 25 0.00053 29.1 4.8 35 264-298 3-37 (160)
236 PRK08760 replicative DNA helic 56.0 30 0.00066 34.5 6.3 37 8-44 231-268 (476)
237 cd02071 MM_CoA_mut_B12_BD meth 55.9 21 0.00045 28.0 4.2 36 8-43 1-36 (122)
238 PRK06321 replicative DNA helic 55.9 31 0.00067 34.4 6.3 36 9-44 229-265 (472)
239 PF07905 PucR: Purine cataboli 55.8 71 0.0015 25.0 7.3 55 252-316 36-91 (123)
240 PRK06904 replicative DNA helic 55.5 26 0.00056 35.0 5.7 37 9-45 224-261 (472)
241 PRK13768 GTPase; Provisional 55.4 69 0.0015 28.9 8.1 37 7-43 3-39 (253)
242 PRK03359 putative electron tra 55.3 22 0.00047 32.1 4.7 31 104-134 112-148 (256)
243 PF06506 PrpR_N: Propionate ca 55.1 8.4 0.00018 32.5 2.0 71 337-408 31-124 (176)
244 cd02069 methionine_synthase_B1 55.1 26 0.00056 30.7 5.1 39 5-43 87-125 (213)
245 cd07039 TPP_PYR_POX Pyrimidine 55.1 1.1E+02 0.0023 25.4 8.6 29 338-368 63-97 (164)
246 PRK06029 3-octaprenyl-4-hydrox 55.1 18 0.0004 30.8 4.0 36 7-43 2-38 (185)
247 PF01075 Glyco_transf_9: Glyco 54.5 23 0.0005 31.6 4.9 94 261-366 104-208 (247)
248 PRK05595 replicative DNA helic 53.8 47 0.001 32.9 7.2 36 9-44 204-240 (444)
249 cd02037 MRP-like MRP (Multiple 53.8 63 0.0014 26.8 7.1 31 13-43 7-37 (169)
250 TIGR01162 purE phosphoribosyla 53.6 1.3E+02 0.0027 24.9 10.7 132 267-427 3-146 (156)
251 PF01695 IstB_IS21: IstB-like 53.3 28 0.00061 29.4 4.9 39 5-43 46-84 (178)
252 PRK10916 ADP-heptose:LPS hepto 53.1 40 0.00087 32.0 6.5 96 261-366 179-286 (348)
253 PRK06849 hypothetical protein; 52.5 28 0.0006 33.8 5.4 35 5-43 3-37 (389)
254 PRK06719 precorrin-2 dehydroge 52.2 22 0.00047 29.4 3.9 34 5-43 12-45 (157)
255 PRK11519 tyrosine kinase; Prov 51.8 3.3E+02 0.0071 29.1 13.8 39 5-43 524-564 (719)
256 TIGR00379 cobB cobyrinic acid 51.2 1.8E+02 0.0039 28.9 10.9 34 9-42 2-36 (449)
257 COG0052 RpsB Ribosomal protein 51.1 13 0.00028 32.9 2.4 32 104-135 156-189 (252)
258 TIGR00421 ubiX_pad polyprenyl 51.0 17 0.00037 30.8 3.2 35 8-43 1-35 (181)
259 cd03466 Nitrogenase_NifN_2 Nit 51.0 1.8E+02 0.0039 28.6 10.8 26 104-132 372-397 (429)
260 PRK04940 hypothetical protein; 50.7 43 0.00092 28.4 5.4 34 104-137 60-94 (180)
261 PF02374 ArsA_ATPase: Anion-tr 49.7 26 0.00055 32.7 4.4 39 8-46 2-41 (305)
262 PF08323 Glyco_transf_5: Starc 49.7 14 0.00031 33.1 2.7 24 21-44 20-43 (245)
263 PLN02695 GDP-D-mannose-3',5'-e 49.5 34 0.00074 32.9 5.5 35 4-42 19-53 (370)
264 PRK14619 NAD(P)H-dependent gly 48.6 19 0.00041 33.6 3.4 34 5-43 3-36 (308)
265 PRK01175 phosphoribosylformylg 48.6 2.1E+02 0.0046 26.0 11.6 57 6-65 3-59 (261)
266 CHL00072 chlL photochlorophyll 47.9 35 0.00076 31.5 5.0 37 7-43 1-37 (290)
267 COG0503 Apt Adenine/guanine ph 47.5 40 0.00086 28.6 4.9 28 104-131 53-82 (179)
268 PRK13236 nitrogenase reductase 47.2 40 0.00088 31.2 5.4 43 1-43 1-43 (296)
269 cd02032 Bchl_like This family 47.0 33 0.00072 31.1 4.7 37 7-43 1-37 (267)
270 TIGR01501 MthylAspMutase methy 46.8 39 0.00085 27.0 4.4 38 6-43 1-38 (134)
271 COG1327 Predicted transcriptio 46.8 26 0.00057 28.3 3.4 101 348-450 35-148 (156)
272 PRK02155 ppnK NAD(+)/NADH kina 46.8 23 0.00049 32.8 3.6 54 337-408 62-119 (291)
273 KOG2825 Putative arsenite-tran 46.7 1.9E+02 0.0041 26.1 8.8 42 4-45 16-58 (323)
274 PF03701 UPF0181: Uncharacteri 46.7 52 0.0011 21.0 3.9 34 413-450 12-45 (51)
275 TIGR00959 ffh signal recogniti 46.6 93 0.002 30.6 7.8 38 6-43 99-137 (428)
276 TIGR00347 bioD dethiobiotin sy 46.5 79 0.0017 26.1 6.6 28 14-41 6-33 (166)
277 TIGR00682 lpxK tetraacyldisacc 46.4 83 0.0018 29.4 7.2 32 14-45 38-69 (311)
278 COG0297 GlgA Glycogen synthase 46.4 59 0.0013 32.5 6.5 126 317-452 344-481 (487)
279 PRK13710 plasmid maintenance p 46.4 84 0.0018 22.0 5.4 43 398-453 24-66 (72)
280 PF06925 MGDG_synth: Monogalac 46.0 51 0.0011 27.5 5.4 23 19-41 1-24 (169)
281 cd01977 Nitrogenase_VFe_alpha 46.0 1.1E+02 0.0023 30.1 8.3 25 104-131 358-382 (415)
282 PF01372 Melittin: Melittin; 45.8 5.6 0.00012 20.8 -0.3 17 349-365 1-17 (26)
283 TIGR01281 DPOR_bchL light-inde 45.4 37 0.0008 30.8 4.8 37 7-43 1-37 (268)
284 PRK04148 hypothetical protein; 45.1 45 0.00097 26.7 4.5 33 5-43 16-48 (134)
285 COG0132 BioD Dethiobiotin synt 44.8 1.4E+02 0.003 26.3 7.9 35 8-42 4-39 (223)
286 KOG1250 Threonine/serine dehyd 44.6 3E+02 0.0065 26.6 10.5 64 340-409 244-317 (457)
287 PLN02470 acetolactate synthase 44.3 47 0.001 34.3 5.8 92 268-367 2-109 (585)
288 PRK13604 luxD acyl transferase 44.2 50 0.0011 30.7 5.3 38 5-42 35-72 (307)
289 PRK05636 replicative DNA helic 43.8 35 0.00075 34.4 4.6 36 9-44 268-304 (505)
290 COG4088 Predicted nucleotide k 43.7 34 0.00073 29.7 3.7 36 8-43 3-38 (261)
291 PRK04885 ppnK inorganic polyph 43.7 30 0.00065 31.4 3.8 52 339-408 36-93 (265)
292 TIGR02700 flavo_MJ0208 archaeo 43.3 35 0.00077 30.3 4.1 36 8-43 1-38 (234)
293 COG2085 Predicted dinucleotide 43.3 40 0.00086 29.3 4.2 32 7-43 2-33 (211)
294 cd01968 Nitrogenase_NifE_I Nit 43.2 2.9E+02 0.0062 27.0 10.8 25 104-131 356-380 (410)
295 PRK06567 putative bifunctional 42.9 30 0.00065 37.6 4.1 35 3-42 380-414 (1028)
296 KOG2941 Beta-1,4-mannosyltrans 42.6 74 0.0016 30.0 6.0 59 4-62 10-70 (444)
297 COG2084 MmsB 3-hydroxyisobutyr 42.6 29 0.00062 31.9 3.5 32 7-43 1-32 (286)
298 PRK09165 replicative DNA helic 42.6 45 0.00096 33.6 5.2 37 9-45 220-271 (497)
299 PRK14077 pnk inorganic polypho 42.6 36 0.00079 31.4 4.2 56 335-408 61-120 (287)
300 PRK06522 2-dehydropantoate 2-r 42.4 30 0.00066 32.0 3.8 31 7-42 1-31 (304)
301 cd02034 CooC The accessory pro 42.4 62 0.0013 25.1 4.9 37 8-44 1-37 (116)
302 cd01141 TroA_d Periplasmic bin 42.3 39 0.00084 28.6 4.2 36 93-132 62-99 (186)
303 PF05693 Glycogen_syn: Glycoge 42.2 39 0.00084 34.4 4.5 74 352-426 485-567 (633)
304 PF03446 NAD_binding_2: NAD bi 41.8 22 0.00048 29.5 2.5 32 6-42 1-32 (163)
305 PF02702 KdpD: Osmosensitive K 41.8 46 0.001 28.7 4.3 39 5-43 4-42 (211)
306 PRK01911 ppnK inorganic polyph 41.6 30 0.00064 32.0 3.5 57 334-408 60-120 (292)
307 COG0300 DltE Short-chain dehyd 41.6 70 0.0015 29.1 5.7 37 3-43 3-39 (265)
308 TIGR01283 nifE nitrogenase mol 41.4 2.6E+02 0.0056 27.8 10.3 25 104-131 395-419 (456)
309 PRK09219 xanthine phosphoribos 41.4 57 0.0012 27.9 4.9 30 104-133 50-81 (189)
310 TIGR00521 coaBC_dfp phosphopan 41.1 33 0.00072 33.2 3.8 38 5-43 2-39 (390)
311 PRK07688 thiamine/molybdopteri 41.0 1.7E+02 0.0037 27.8 8.5 33 6-43 24-57 (339)
312 COG0299 PurN Folate-dependent 41.0 2.1E+02 0.0046 24.6 8.0 121 276-423 64-186 (200)
313 PRK05784 phosphoribosylamine-- 40.9 1.5E+02 0.0032 29.9 8.4 31 7-42 1-33 (486)
314 PRK02645 ppnK inorganic polyph 40.9 58 0.0013 30.3 5.3 29 338-368 57-89 (305)
315 PRK14478 nitrogenase molybdenu 40.7 2.4E+02 0.0051 28.3 9.9 24 104-130 393-416 (475)
316 KOG1210 Predicted 3-ketosphing 40.6 54 0.0012 30.4 4.8 33 8-43 34-66 (331)
317 PF07355 GRDB: Glycine/sarcosi 40.6 40 0.00086 31.7 4.1 39 344-391 272-311 (349)
318 PRK07414 cob(I)yrinic acid a,c 40.5 1.5E+02 0.0033 25.1 7.1 98 5-114 20-125 (178)
319 PRK06835 DNA replication prote 40.3 55 0.0012 30.9 5.1 38 6-43 183-220 (329)
320 PRK14092 2-amino-4-hydroxy-6-h 40.1 76 0.0016 26.4 5.3 31 260-290 5-35 (163)
321 KOG1429 dTDP-glucose 4-6-dehyd 40.0 63 0.0014 29.6 5.0 38 3-44 24-61 (350)
322 cd01421 IMPCH Inosine monophos 40.0 37 0.0008 28.9 3.5 43 21-66 11-55 (187)
323 PRK02649 ppnK inorganic polyph 40.0 29 0.00063 32.3 3.1 53 338-408 68-124 (305)
324 PF03853 YjeF_N: YjeF-related 39.6 60 0.0013 27.1 4.8 38 4-42 23-60 (169)
325 PRK05114 hypothetical protein; 39.5 1E+02 0.0022 20.3 4.6 34 413-450 12-45 (59)
326 PRK05579 bifunctional phosphop 39.5 41 0.0009 32.7 4.2 38 5-43 5-42 (399)
327 COG3140 Uncharacterized protei 39.5 94 0.002 20.2 4.3 34 413-450 12-45 (60)
328 PRK07773 replicative DNA helic 39.4 49 0.0011 36.1 5.2 37 9-45 220-257 (886)
329 COG2210 Peroxiredoxin family p 39.4 66 0.0014 25.7 4.5 33 10-42 7-39 (137)
330 PRK07454 short chain dehydroge 39.3 73 0.0016 28.1 5.7 38 1-42 1-38 (241)
331 TIGR01007 eps_fam capsular exo 39.3 72 0.0016 27.5 5.4 38 6-43 17-55 (204)
332 PRK03378 ppnK inorganic polyph 39.0 44 0.00095 30.9 4.1 56 335-408 60-119 (292)
333 PLN00016 RNA-binding protein; 38.9 39 0.00086 32.5 4.1 36 6-43 52-89 (378)
334 PRK13234 nifH nitrogenase redu 38.8 59 0.0013 30.1 5.1 39 5-43 3-41 (295)
335 PRK08322 acetolactate synthase 38.7 1.2E+02 0.0025 31.1 7.6 26 342-367 65-96 (547)
336 PLN02211 methyl indole-3-aceta 38.6 48 0.001 30.2 4.4 42 1-43 12-54 (273)
337 PRK07206 hypothetical protein; 38.6 1.1E+02 0.0023 30.0 7.1 32 7-43 3-34 (416)
338 PRK13869 plasmid-partitioning 38.5 57 0.0012 31.9 5.1 38 6-43 120-159 (405)
339 PRK14618 NAD(P)H-dependent gly 38.3 36 0.00078 32.1 3.6 34 5-43 3-36 (328)
340 PRK06718 precorrin-2 dehydroge 38.3 1E+02 0.0022 26.7 6.2 141 261-427 10-164 (202)
341 COG1698 Uncharacterized protei 38.1 1.3E+02 0.0027 22.0 5.3 50 398-450 18-68 (93)
342 PRK04539 ppnK inorganic polyph 37.9 48 0.001 30.7 4.2 57 334-408 64-124 (296)
343 COG3349 Uncharacterized conser 37.8 35 0.00076 33.8 3.4 32 7-43 1-32 (485)
344 PF09001 DUF1890: Domain of un 37.4 35 0.00075 27.2 2.7 28 16-43 9-36 (139)
345 PF07991 IlvN: Acetohydroxy ac 37.3 31 0.00068 28.5 2.6 51 6-61 4-55 (165)
346 PRK00207 sulfur transfer compl 37.3 82 0.0018 25.0 4.9 25 19-43 16-41 (128)
347 cd01840 SGNH_hydrolase_yrhL_li 37.2 62 0.0013 26.3 4.5 38 261-299 50-87 (150)
348 PRK08181 transposase; Validate 37.1 61 0.0013 29.6 4.7 37 6-42 106-142 (269)
349 PF13450 NAD_binding_8: NAD(P) 37.1 44 0.00095 22.9 3.0 21 23-43 8-28 (68)
350 PRK02231 ppnK inorganic polyph 36.9 35 0.00075 31.2 3.1 57 333-407 37-97 (272)
351 PRK06276 acetolactate synthase 36.9 93 0.002 32.1 6.6 28 338-367 63-96 (586)
352 cd02040 NifH NifH gene encodes 36.7 63 0.0014 29.3 4.9 37 7-43 2-38 (270)
353 CHL00194 ycf39 Ycf39; Provisio 36.7 66 0.0014 30.0 5.2 33 7-43 1-33 (317)
354 TIGR00064 ftsY signal recognit 36.2 86 0.0019 28.7 5.6 38 6-43 72-109 (272)
355 PF05728 UPF0227: Uncharacteri 36.2 98 0.0021 26.4 5.6 34 106-139 61-95 (187)
356 PRK06718 precorrin-2 dehydroge 35.8 54 0.0012 28.4 4.0 34 5-43 9-42 (202)
357 PF04748 Polysacc_deac_2: Dive 35.6 93 0.002 27.2 5.5 39 88-132 107-148 (213)
358 PF01075 Glyco_transf_9: Glyco 35.4 3.1E+02 0.0068 24.2 9.4 104 5-135 104-212 (247)
359 PLN02948 phosphoribosylaminoim 35.3 3.7E+02 0.008 27.8 10.5 34 6-44 22-55 (577)
360 KOG0780 Signal recognition par 35.0 1.1E+02 0.0023 29.5 5.8 38 6-43 101-138 (483)
361 cd06559 Endonuclease_V Endonuc 35.0 47 0.001 28.9 3.5 31 104-134 93-130 (208)
362 PRK12367 short chain dehydroge 34.8 59 0.0013 29.1 4.3 32 8-42 15-46 (245)
363 PRK11914 diacylglycerol kinase 34.7 70 0.0015 29.7 4.9 81 264-368 12-96 (306)
364 PRK07710 acetolactate synthase 34.5 89 0.0019 32.1 6.1 28 338-367 78-111 (571)
365 cd07038 TPP_PYR_PDC_IPDC_like 34.5 48 0.001 27.5 3.4 28 339-368 60-93 (162)
366 PRK12921 2-dehydropantoate 2-r 34.5 38 0.00083 31.3 3.2 31 7-42 1-31 (305)
367 TIGR03018 pepcterm_TyrKin exop 34.3 95 0.0021 26.9 5.4 39 5-43 33-74 (207)
368 TIGR02699 archaeo_AfpA archaeo 34.1 58 0.0013 27.4 3.8 34 9-43 2-37 (174)
369 PRK06526 transposase; Provisio 34.0 45 0.00098 30.1 3.4 37 6-42 98-134 (254)
370 cd03114 ArgK-like The function 34.0 2.6E+02 0.0055 22.7 11.0 35 9-43 2-36 (148)
371 cd07025 Peptidase_S66 LD-Carbo 33.8 97 0.0021 28.5 5.6 74 275-369 46-121 (282)
372 PRK13982 bifunctional SbtC-lik 33.7 55 0.0012 32.6 4.1 38 6-44 70-107 (475)
373 PRK00048 dihydrodipicolinate r 33.7 2.1E+02 0.0045 25.8 7.7 57 331-391 53-115 (257)
374 PRK04296 thymidine kinase; Pro 33.7 2.4E+02 0.0052 24.0 7.7 35 8-42 3-38 (190)
375 PRK05282 (alpha)-aspartyl dipe 33.6 1.4E+02 0.0031 26.5 6.3 41 253-295 25-65 (233)
376 PRK12810 gltD glutamate syntha 33.6 51 0.0011 32.9 4.0 35 4-43 141-175 (471)
377 PHA02754 hypothetical protein; 33.4 82 0.0018 20.7 3.4 23 401-426 6-28 (67)
378 COG3195 Uncharacterized protei 33.3 2.3E+02 0.0051 23.5 6.8 95 331-426 64-164 (176)
379 TIGR03029 EpsG chain length de 33.3 96 0.0021 28.2 5.5 37 7-43 104-141 (274)
380 PLN02778 3,5-epimerase/4-reduc 33.3 93 0.002 28.8 5.5 31 5-39 8-38 (298)
381 COG0569 TrkA K+ transport syst 33.3 55 0.0012 28.9 3.7 32 7-43 1-32 (225)
382 cd01983 Fer4_NifH The Fer4_Nif 33.3 1E+02 0.0022 22.0 4.8 33 9-41 2-34 (99)
383 PRK13230 nitrogenase reductase 33.2 80 0.0017 28.9 5.0 37 7-43 2-38 (279)
384 PLN00198 anthocyanidin reducta 33.0 91 0.002 29.3 5.5 38 2-43 5-42 (338)
385 PF05225 HTH_psq: helix-turn-h 33.0 56 0.0012 20.4 2.7 27 394-422 1-27 (45)
386 COG2120 Uncharacterized protei 32.9 78 0.0017 28.2 4.7 39 5-43 9-47 (237)
387 COG2733 Predicted membrane pro 32.8 1.2E+02 0.0026 29.0 5.8 45 359-405 62-108 (415)
388 PF02780 Transketolase_C: Tran 32.8 76 0.0016 24.8 4.2 37 5-43 8-44 (124)
389 PRK08939 primosomal protein Dn 32.8 87 0.0019 29.2 5.1 38 6-43 156-193 (306)
390 COG0451 WcaG Nucleoside-diphos 32.8 1.1E+02 0.0023 28.2 5.9 31 9-43 3-33 (314)
391 PLN00141 Tic62-NAD(P)-related 32.8 96 0.0021 27.7 5.4 33 6-42 17-49 (251)
392 TIGR00313 cobQ cobyric acid sy 32.8 5.2E+02 0.011 25.9 11.4 27 17-43 10-36 (475)
393 PRK08057 cobalt-precorrin-6x r 32.7 3.5E+02 0.0077 24.3 8.8 31 7-42 3-33 (248)
394 TIGR02114 coaB_strep phosphopa 32.7 52 0.0011 29.1 3.5 21 22-42 27-47 (227)
395 PRK08229 2-dehydropantoate 2-r 32.4 43 0.00094 31.7 3.2 32 7-43 3-34 (341)
396 PRK13185 chlL protochlorophyll 32.4 79 0.0017 28.7 4.8 37 7-43 3-39 (270)
397 COG3640 CooC CO dehydrogenase 32.1 1.3E+02 0.0027 26.9 5.5 38 7-44 1-39 (255)
398 PRK03372 ppnK inorganic polyph 32.0 63 0.0014 30.1 4.0 55 336-408 70-128 (306)
399 COG0240 GpsA Glycerol-3-phosph 32.0 66 0.0014 30.1 4.1 33 6-43 1-33 (329)
400 PRK08155 acetolactate synthase 31.9 75 0.0016 32.6 5.0 90 268-367 3-109 (564)
401 COG0771 MurD UDP-N-acetylmuram 31.8 79 0.0017 31.2 4.8 34 5-43 6-39 (448)
402 cd02033 BchX Chlorophyllide re 31.8 94 0.002 29.3 5.1 38 6-43 31-68 (329)
403 PRK00421 murC UDP-N-acetylmura 31.8 70 0.0015 31.8 4.6 35 4-42 5-39 (461)
404 cd02065 B12-binding_like B12 b 31.6 83 0.0018 24.3 4.2 34 9-42 2-35 (125)
405 PRK07236 hypothetical protein; 31.5 92 0.002 30.0 5.4 38 1-43 1-38 (386)
406 KOG0081 GTPase Rab27, small G 31.5 1.3E+02 0.0027 24.8 5.0 32 104-135 124-165 (219)
407 TIGR00640 acid_CoA_mut_C methy 31.4 1E+02 0.0022 24.5 4.7 37 6-42 2-38 (132)
408 PF03720 UDPG_MGDP_dh_C: UDP-g 31.4 61 0.0013 24.6 3.2 23 21-43 17-39 (106)
409 PRK03501 ppnK inorganic polyph 31.3 62 0.0013 29.4 3.8 53 339-408 40-97 (264)
410 PRK12815 carB carbamoyl phosph 31.3 6.2E+02 0.014 28.5 12.1 39 5-43 554-598 (1068)
411 PRK04761 ppnK inorganic polyph 31.2 28 0.0006 31.2 1.5 28 339-368 26-57 (246)
412 TIGR02398 gluc_glyc_Psyn gluco 31.2 4.5E+02 0.0097 26.5 10.0 109 325-450 365-484 (487)
413 TIGR02128 G6PI_arch bifunction 31.1 4.3E+02 0.0093 24.7 9.4 56 11-66 70-125 (308)
414 TIGR01744 XPRTase xanthine pho 31.0 1E+02 0.0023 26.4 4.9 29 104-132 50-80 (191)
415 TIGR02622 CDP_4_6_dhtase CDP-g 30.9 79 0.0017 29.9 4.7 33 6-42 4-36 (349)
416 PRK05579 bifunctional phosphop 30.8 1E+02 0.0022 30.0 5.4 22 22-43 216-237 (399)
417 COG0541 Ffh Signal recognition 30.7 1.5E+02 0.0033 28.9 6.3 40 4-43 98-137 (451)
418 PF00070 Pyr_redox: Pyridine n 30.6 72 0.0016 22.5 3.4 23 21-43 9-31 (80)
419 KOG4417 Predicted endonuclease 30.6 76 0.0016 27.3 3.8 44 90-133 101-151 (261)
420 TIGR01369 CPSaseII_lrg carbamo 30.6 6.9E+02 0.015 28.1 12.3 40 4-43 552-597 (1050)
421 PLN03050 pyridoxine (pyridoxam 30.5 89 0.0019 28.1 4.6 33 7-42 61-95 (246)
422 PRK06270 homoserine dehydrogen 30.5 2.5E+02 0.0055 26.6 7.9 58 331-389 80-149 (341)
423 PRK12825 fabG 3-ketoacyl-(acyl 30.5 1.2E+02 0.0025 26.7 5.6 34 6-43 6-39 (249)
424 cd01452 VWA_26S_proteasome_sub 30.5 1.4E+02 0.003 25.6 5.5 37 7-43 109-145 (187)
425 TIGR01316 gltA glutamate synth 30.4 95 0.0021 30.8 5.3 36 3-43 130-165 (449)
426 TIGR00355 purH phosphoribosyla 30.2 66 0.0014 32.0 3.9 86 21-114 11-101 (511)
427 PRK14477 bifunctional nitrogen 30.2 4.7E+02 0.01 28.9 10.7 34 5-43 319-352 (917)
428 PF04558 tRNA_synt_1c_R1: Glut 30.1 53 0.0011 27.4 2.9 32 372-408 101-132 (164)
429 PRK13057 putative lipid kinase 30.0 1.8E+02 0.0039 26.7 6.8 30 337-368 49-82 (287)
430 COG2267 PldB Lysophospholipase 30.0 94 0.002 28.8 4.9 39 5-43 32-70 (298)
431 TIGR01918 various_sel_PB selen 29.8 70 0.0015 31.0 3.9 44 344-389 348-393 (431)
432 cd02117 NifH_like This family 29.8 98 0.0021 26.9 4.8 36 8-43 2-37 (212)
433 TIGR02329 propionate_PrpR prop 29.7 3.9E+02 0.0084 27.2 9.4 44 89-139 134-177 (526)
434 TIGR01470 cysG_Nterm siroheme 29.6 85 0.0019 27.2 4.3 34 6-44 9-42 (205)
435 TIGR01917 gly_red_sel_B glycin 29.6 70 0.0015 31.0 3.9 48 76-130 55-112 (431)
436 PRK07453 protochlorophyllide o 29.6 1.3E+02 0.0027 28.1 5.8 38 1-42 1-38 (322)
437 COG0287 TyrA Prephenate dehydr 29.5 2.4E+02 0.0051 25.9 7.2 35 6-45 3-37 (279)
438 PRK02122 glucosamine-6-phospha 29.4 89 0.0019 32.7 5.0 38 6-43 369-406 (652)
439 PRK05858 hypothetical protein; 29.2 2.2E+02 0.0048 29.0 7.8 28 338-367 67-100 (542)
440 COG0151 PurD Phosphoribosylami 29.1 3.1E+02 0.0067 26.8 8.0 34 7-45 1-34 (428)
441 PRK12377 putative replication 29.1 96 0.0021 27.9 4.6 37 7-43 102-138 (248)
442 PRK06921 hypothetical protein; 29.1 1.1E+02 0.0024 27.8 5.1 37 6-42 117-154 (266)
443 PRK01231 ppnK inorganic polyph 29.1 87 0.0019 29.0 4.4 53 338-408 62-118 (295)
444 PLN02583 cinnamoyl-CoA reducta 29.0 1.2E+02 0.0026 27.9 5.5 21 22-42 18-38 (297)
445 TIGR00345 arsA arsenite-activa 29.0 1.7E+02 0.0037 26.9 6.3 22 24-45 3-24 (284)
446 cd01147 HemV-2 Metal binding p 28.9 84 0.0018 28.2 4.3 31 104-134 74-107 (262)
447 PF02056 Glyco_hydro_4: Family 28.6 2.6E+02 0.0056 23.8 6.8 112 18-138 39-173 (183)
448 PRK06111 acetyl-CoA carboxylas 28.6 4E+02 0.0087 26.3 9.4 32 7-43 3-34 (450)
449 PRK01185 ppnK inorganic polyph 28.5 78 0.0017 28.9 3.9 53 338-408 52-105 (271)
450 PLN02686 cinnamoyl-CoA reducta 28.4 1.2E+02 0.0027 29.0 5.5 34 5-42 52-85 (367)
451 COG0205 PfkA 6-phosphofructoki 28.3 5.3E+02 0.011 24.6 9.5 38 6-43 2-41 (347)
452 PRK11780 isoprenoid biosynthes 28.3 1.2E+02 0.0027 26.5 5.0 37 7-43 2-42 (217)
453 TIGR01287 nifH nitrogenase iro 28.1 1E+02 0.0022 28.0 4.8 36 8-43 2-37 (275)
454 PLN02350 phosphogluconate dehy 28.1 48 0.001 33.2 2.7 37 1-42 1-37 (493)
455 cd00861 ProRS_anticodon_short 28.0 1.2E+02 0.0025 22.0 4.3 36 7-42 2-39 (94)
456 TIGR03026 NDP-sugDHase nucleot 28.0 82 0.0018 30.8 4.3 32 7-43 1-32 (411)
457 PF03403 PAF-AH_p_II: Platelet 27.9 57 0.0012 31.5 3.1 39 5-43 98-136 (379)
458 PF12695 Abhydrolase_5: Alpha/ 27.9 1.2E+02 0.0025 23.9 4.6 34 10-43 2-35 (145)
459 PRK09135 pteridine reductase; 27.7 1.5E+02 0.0032 26.1 5.7 38 1-42 1-38 (249)
460 PRK10749 lysophospholipase L2; 27.6 1.2E+02 0.0026 28.5 5.3 36 8-43 55-90 (330)
461 PF10093 DUF2331: Uncharacteri 27.6 1.4E+02 0.003 28.7 5.4 83 270-364 187-286 (374)
462 COG1090 Predicted nucleoside-d 27.4 3.5E+02 0.0075 24.9 7.6 20 24-43 12-31 (297)
463 PRK13235 nifH nitrogenase redu 27.4 1.1E+02 0.0023 27.9 4.8 37 7-43 2-38 (274)
464 KOG1502 Flavonol reductase/cin 27.3 1.2E+02 0.0026 28.4 4.9 39 1-43 1-39 (327)
465 cd01075 NAD_bind_Leu_Phe_Val_D 27.3 85 0.0018 27.1 3.8 30 6-40 28-57 (200)
466 TIGR01915 npdG NADPH-dependent 27.3 1.3E+02 0.0029 26.2 5.2 31 7-42 1-32 (219)
467 TIGR00147 lipid kinase, YegS/R 27.2 1.5E+02 0.0032 27.3 5.7 28 339-368 58-91 (293)
468 COG2812 DnaX DNA polymerase II 27.2 1.9E+02 0.0042 29.2 6.6 144 275-448 131-291 (515)
469 PRK11749 dihydropyrimidine deh 27.2 69 0.0015 31.8 3.7 35 4-43 138-172 (457)
470 TIGR00640 acid_CoA_mut_C methy 27.2 91 0.002 24.9 3.7 38 5-42 52-90 (132)
471 PF00862 Sucrose_synth: Sucros 27.2 48 0.001 32.9 2.4 111 16-134 295-433 (550)
472 PF03721 UDPG_MGDP_dh_N: UDP-g 27.2 1E+02 0.0022 26.2 4.2 32 7-43 1-32 (185)
473 PF06506 PrpR_N: Propionate ca 27.2 58 0.0013 27.4 2.7 109 18-135 17-153 (176)
474 PRK07952 DNA replication prote 27.1 1.2E+02 0.0025 27.3 4.7 35 8-42 101-135 (244)
475 PF08357 SEFIR: SEFIR domain; 27.1 85 0.0018 25.4 3.7 31 9-39 4-35 (150)
476 PRK13054 lipid kinase; Reviewe 27.1 1.8E+02 0.004 26.9 6.3 81 262-368 4-92 (300)
477 TIGR03453 partition_RepA plasm 27.1 1.2E+02 0.0026 29.4 5.2 39 5-43 102-142 (387)
478 PRK00881 purH bifunctional pho 27.0 80 0.0017 31.6 3.9 55 7-68 5-61 (513)
479 COG2099 CobK Precorrin-6x redu 26.9 4.1E+02 0.0089 23.9 7.9 33 6-43 2-34 (257)
480 COG4566 TtrR Response regulato 26.8 3.9E+02 0.0085 22.9 7.3 50 357-408 73-122 (202)
481 PLN02214 cinnamoyl-CoA reducta 26.8 1.4E+02 0.0031 28.2 5.6 35 5-43 9-43 (342)
482 COG2086 FixA Electron transfer 26.8 98 0.0021 28.0 4.1 31 104-134 111-147 (260)
483 TIGR00853 pts-lac PTS system, 26.7 1.5E+02 0.0033 22.0 4.6 39 5-43 2-40 (95)
484 PF06180 CbiK: Cobalt chelatas 26.6 94 0.002 28.2 4.1 39 263-301 2-43 (262)
485 PRK00771 signal recognition pa 26.5 1.4E+02 0.003 29.5 5.5 39 5-43 94-132 (437)
486 PRK06603 enoyl-(acyl carrier p 26.5 1.3E+02 0.0029 26.9 5.2 34 7-41 8-41 (260)
487 PF13460 NAD_binding_10: NADH( 26.5 1.4E+02 0.003 24.9 5.1 43 15-61 5-47 (183)
488 PRK03094 hypothetical protein; 26.3 64 0.0014 23.1 2.3 20 23-42 10-29 (80)
489 PRK09444 pntB pyridine nucleot 26.2 1E+02 0.0023 30.2 4.4 38 6-43 306-346 (462)
490 KOG3062 RNA polymerase II elon 26.2 1.3E+02 0.0029 26.5 4.6 29 8-36 3-31 (281)
491 TIGR00460 fmt methionyl-tRNA f 26.2 83 0.0018 29.5 3.8 32 7-43 1-32 (313)
492 PRK08462 biotin carboxylase; V 26.2 6.4E+02 0.014 24.8 10.6 34 5-43 3-36 (445)
493 PRK14075 pnk inorganic polypho 26.2 93 0.002 28.1 4.0 52 339-408 42-94 (256)
494 PRK06194 hypothetical protein; 26.2 1.6E+02 0.0034 26.8 5.7 21 22-42 18-38 (287)
495 COG1058 CinA Predicted nucleot 26.2 1E+02 0.0023 27.7 4.2 82 266-370 6-97 (255)
496 PF03205 MobB: Molybdopterin g 26.1 1.3E+02 0.0028 24.2 4.5 36 8-43 2-37 (140)
497 PLN02935 Bifunctional NADH kin 26.1 91 0.002 31.1 4.1 54 337-408 261-318 (508)
498 PF01738 DLH: Dienelactone hyd 26.0 1.2E+02 0.0026 26.3 4.7 37 6-42 13-49 (218)
499 PRK09213 pur operon repressor; 26.0 1.3E+02 0.0028 27.4 4.9 30 104-133 130-161 (271)
500 PLN02166 dTDP-glucose 4,6-dehy 26.0 1.4E+02 0.0029 29.6 5.4 34 5-42 119-152 (436)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=1.9e-66 Score=500.67 Aligned_cols=445 Identities=45% Similarity=0.805 Sum_probs=347.8
Q ss_pred CCCCC-CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCC-CCCCCeeEEecCCCCCCCCCCccCHHHHH
Q 012735 1 MDQRK-GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNP-SSHPHLTFHFIQENLSASEASTDDLVAFV 78 (457)
Q Consensus 1 ~~~~~-~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~~~~~~~~~ 78 (457)
|+.++ +.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+|+++|++.........++
T Consensus 1 ~~~~~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~ 80 (451)
T PLN02410 1 MEEKPARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFL 80 (451)
T ss_pred CCcCCCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHH
Confidence 55444 56999999999999999999999999999999999998764221 11246999999998887432222344566
Q ss_pred HHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCC-CCCC
Q 012735 79 SLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGY-FPIQ 157 (457)
Q Consensus 79 ~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p~~ 157 (457)
..+...+...+++.++++...... ++++||+|.+..|+..+|+++|||++.++++++.......+.+....... .|..
T Consensus 81 ~~~~~~~~~~~~~~L~~l~~~~~~-p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~ 159 (451)
T PLN02410 81 HKLNKECQVSFKDCLGQLVLQQGN-EIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK 159 (451)
T ss_pred HHHHHHhHHHHHHHHHHHHhccCC-CcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc
Confidence 666667777788877776532222 67999999999999999999999999999999998876655432222111 1211
Q ss_pred C--CCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccc
Q 012735 158 D--SKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFH 235 (457)
Q Consensus 158 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~ 235 (457)
. ......+|+++.++..+++.........+...+.... ....++.+++||+.+||+..++.+++.+..|+++|||++
T Consensus 160 ~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~ 238 (451)
T PLN02410 160 EPKGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLH 238 (451)
T ss_pred ccccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccc
Confidence 1 1112246777766666666432122222333332222 346788999999999999999999886666799999998
Q ss_pred cCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchh
Q 012735 236 ICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSG 315 (457)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~ 315 (457)
..... .......++++.+||+++++++||||||||....+.+.+.+++.+|+.++++|+|++..+...+.+....+|++
T Consensus 239 ~~~~~-~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~ 317 (451)
T PLN02410 239 LVASA-PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKE 317 (451)
T ss_pred cccCC-CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChh
Confidence 64321 01112223457899999888999999999999999999999999999999999999974321111112348999
Q ss_pred HHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCH
Q 012735 316 FMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR 395 (457)
Q Consensus 316 ~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 395 (457)
|.+|.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|+|+.++..++.
T Consensus 318 f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~ 397 (451)
T PLN02410 318 FSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLDR 397 (451)
T ss_pred HHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999998745999999777899
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 396 EEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 396 ~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
++|+++|+++|.++++++||++|+++++++++++.++||+.++++++++.+.+
T Consensus 398 ~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~ 450 (451)
T PLN02410 398 GAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRT 450 (451)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 99999999999886677999999999999999999999999999999999865
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.6e-63 Score=480.36 Aligned_cols=439 Identities=28% Similarity=0.549 Sum_probs=343.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC----------C---CCCeeEEecCCCCCCCCCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPS----------S---HPHLTFHFIQENLSASEAS 70 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~----------~---~~g~~~~~i~~~~~~~~~~ 70 (457)
+.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...++|..+|++++++.+.
T Consensus 5 ~~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~ 84 (480)
T PLN02555 5 SSLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPR 84 (480)
T ss_pred CCCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCccc
Confidence 34789999999999999999999999999999999999986543211 0 1126676678888765432
Q ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhh
Q 012735 71 TDDLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKE 150 (457)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 150 (457)
..+...++..+...+...++++++++.... . .+++||+|.+..|+..+|+++|||++.++++++..+..+.+.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~-pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~--- 159 (480)
T PLN02555 85 RQDLDLYLPQLELVGKREIPNLVKRYAEQG-R-PVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYH--- 159 (480)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHHHhccC-C-CceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhh---
Confidence 334445566665566777777776653221 1 34999999999999999999999999999999998887766421
Q ss_pred cCCCCCCC---CCCCccccCCCCCCCCCCCCCCCC--CChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcC
Q 012735 151 RGYFPIQD---SKGQEPVVELPPLKIKDLPVINTR--DPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFS 225 (457)
Q Consensus 151 ~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 225 (457)
...+... +.....+|+++.++..+++..... ....+.+.+.+..+....++.+++||+.+||...++.++..
T Consensus 160 -~~~~~~~~~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~-- 236 (480)
T PLN02555 160 -GLVPFPTETEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL-- 236 (480)
T ss_pred -cCCCcccccCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC--
Confidence 1111111 112234788887888888754321 22233444444445667788999999999999998888763
Q ss_pred CCccccCccccCCCC--C--CCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCC
Q 012735 226 IPIFPIGPFHICIPA--S--PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPG 301 (457)
Q Consensus 226 ~p~~~vGp~~~~~~~--~--~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 301 (457)
.|++.|||+...... . +...+..++++.+||+++++++||||||||+...+.+++.+++.+++..+++|||++...
T Consensus 237 ~~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~ 316 (480)
T PLN02555 237 CPIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPP 316 (480)
T ss_pred CCEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecC
Confidence 359999999753211 0 011123345699999998888999999999999999999999999999999999998742
Q ss_pred CCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHh
Q 012735 302 LTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSD 381 (457)
Q Consensus 302 ~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~ 381 (457)
..........+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++
T Consensus 317 ~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~ 396 (480)
T PLN02555 317 HKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVD 396 (480)
T ss_pred cccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHH
Confidence 11000001348899999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhccceecC-----C-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 382 VWKVGLQLE-----N-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 382 ~lG~g~~l~-----~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
.+|+|+.+. . .++.++|.++|++++.+++++.+|+||++|+++.++++.++||+.++++++++.+.+..
T Consensus 397 ~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~~ 471 (480)
T PLN02555 397 VFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRKS 471 (480)
T ss_pred HhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhcc
Confidence 579999993 3 58999999999999988777899999999999999999999999999999999998763
No 3
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.3e-63 Score=477.79 Aligned_cols=430 Identities=30% Similarity=0.534 Sum_probs=332.7
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC----CCCCeeEEecCCCCCCCCCCccCHHH
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPS----SHPHLTFHFIQENLSASEASTDDLVA 76 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~----~~~g~~~~~i~~~~~~~~~~~~~~~~ 76 (457)
|+-..+.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ...+++++.+|++++.+. ..+...
T Consensus 1 ~~~~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~ 78 (448)
T PLN02562 1 MKVTQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFS 78 (448)
T ss_pred CCCCCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHH
Confidence 45456779999999999999999999999999999999999986542211 113699999998775422 123334
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCC
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPI 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 156 (457)
++..+...+...+.++++++... . .+++||+|.+..|+..+|+++|||++.++++++..+....+.+........+.
T Consensus 79 l~~a~~~~~~~~l~~ll~~l~~~--~-pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~ 155 (448)
T PLN02562 79 IENSMENTMPPQLERLLHKLDED--G-EVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISE 155 (448)
T ss_pred HHHHHHHhchHHHHHHHHHhcCC--C-CcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhcccccc
Confidence 44444445677777776665422 1 45899999999999999999999999999998887776655443222222111
Q ss_pred CC-CCC---CccccCCCCCCCCCCCCCCCCC--ChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhh----cCC
Q 012735 157 QD-SKG---QEPVVELPPLKIKDLPVINTRD--PETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQ----FSI 226 (457)
Q Consensus 157 ~~-~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~----~~~ 226 (457)
.+ +.. ...+|+++.++..+++...... .....+.+.+..+....++.+++||+.+||+..+..+.+. ..+
T Consensus 156 ~~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~ 235 (448)
T PLN02562 156 TGCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNP 235 (448)
T ss_pred ccccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCC
Confidence 11 000 1146777777777777543211 2233455555556677788999999999999887766542 224
Q ss_pred CccccCccccCCCCC--CCCCccCccccccccCCCCCCcEEEEEecccc-cCCHHHHHHHHHHHhhCCCCeEEEECCCCC
Q 012735 227 PIFPIGPFHICIPAS--PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIA-AVSEAEFLEIAWGLANCKLPFLWVVRPGLT 303 (457)
Q Consensus 227 p~~~vGp~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 303 (457)
+++.|||++...... ....++.+.++.+||++++++++|||||||+. ..+.+++++++.+|++++++|||++..+.
T Consensus 236 ~v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~- 314 (448)
T PLN02562 236 QILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW- 314 (448)
T ss_pred CEEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc-
Confidence 599999998654210 01123455567899999888899999999986 57899999999999999999999996532
Q ss_pred CCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhh
Q 012735 304 RGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVW 383 (457)
Q Consensus 304 ~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~l 383 (457)
...+|+++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+
T Consensus 315 -----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~ 389 (448)
T PLN02562 315 -----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVW 389 (448)
T ss_pred -----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHh
Confidence 124889999999999999999999999999999999999999999999999999999999999999999998635
Q ss_pred ccceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 384 KVGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 384 G~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
|+|+.+.. ++.++|+++|+++|.| ++||+||++++++++++ .++|||.++++++++.+
T Consensus 390 g~g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~ 447 (448)
T PLN02562 390 KIGVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDEL 447 (448)
T ss_pred CceeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHh
Confidence 99988864 7999999999999999 89999999999999876 56789999999999876
No 4
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.6e-62 Score=478.90 Aligned_cols=431 Identities=31% Similarity=0.541 Sum_probs=334.0
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCC---CCCeeEEecCCCCCCCCCCccCHHH
Q 012735 2 DQRKGRRLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSS---HPHLTFHFIQENLSASEASTDDLVA 76 (457)
Q Consensus 2 ~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~---~~g~~~~~i~~~~~~~~~~~~~~~~ 76 (457)
.|+++.||+++|++++||++|++.||++|+++ ||+|||++++.+.....+ ..+++|+.+|++++.+.....+...
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~ 85 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPG 85 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHH
Confidence 46789999999999999999999999999999 999999999865432222 1479999999877655433344555
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCC
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPI 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 156 (457)
++..+.+.+...+.++++++. . ++|+||+|.++.|+..+|+++|||++.++++++..+..+.+.+........+.
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~----~-~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~ 160 (459)
T PLN02448 86 FLEAVMTKMEAPFEQLLDRLE----P-PVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPV 160 (459)
T ss_pred HHHHHHHHhHHHHHHHHHhcC----C-CcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCC
Confidence 555555556666666665543 1 78999999999999999999999999999999877776655443222111222
Q ss_pred CCC----CCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccC
Q 012735 157 QDS----KGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIG 232 (457)
Q Consensus 157 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vG 232 (457)
... .....+|+++.++..+++...........+.+........+++.+++|++.+||+..++.+++.++.|++.||
T Consensus 161 ~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iG 240 (459)
T PLN02448 161 ELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIG 240 (459)
T ss_pred ccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEec
Confidence 111 1011356666666666664332222233344444445566778999999999999999999887666799999
Q ss_pred ccccCCCCC--CCC-Cc-cCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCC
Q 012735 233 PFHICIPAS--PSS-LL-TQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDC 308 (457)
Q Consensus 233 p~~~~~~~~--~~~-~~-~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 308 (457)
|+....... ... .. +.+.++.+|++.++++++|||||||....+.+++++++++|+..+.++||++...
T Consensus 241 P~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------- 313 (459)
T PLN02448 241 PSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------- 313 (459)
T ss_pred CcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc-------
Confidence 997532110 000 01 1223688999998888999999999988889999999999999999999987532
Q ss_pred CCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhcccee
Q 012735 309 LEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQ 388 (457)
Q Consensus 309 ~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~ 388 (457)
..++.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|+|+.
T Consensus 314 ----~~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~ 389 (459)
T PLN02448 314 ----ASRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWR 389 (459)
T ss_pred ----hhhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEE
Confidence 1234455556788899999999999999999999999999999999999999999999999999999874688888
Q ss_pred cCC------CCCHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 389 LEN------GLKREEIEKTIRRVMVE--KQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 389 l~~------~~~~~~l~~ai~~il~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+.. .+++++|+++++++|.+ +++++||+||++++++.++++.++||+.++++++++.+.+
T Consensus 390 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 390 VKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 842 46999999999999986 3467999999999999999999999999999999999864
No 5
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.7e-62 Score=472.93 Aligned_cols=437 Identities=25% Similarity=0.384 Sum_probs=329.6
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC-----CCCCeeEEecC----CCCCCCCCCc
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPS-----SHPHLTFHFIQ----ENLSASEAST 71 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~-----~~~g~~~~~i~----~~~~~~~~~~ 71 (457)
|+.+.+.||+++|++++||++|++.||+.|+.+|..|||++++.+..... ...+++++.+| ++++++.+..
T Consensus 1 ~~~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~ 80 (472)
T PLN02670 1 MKREEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESS 80 (472)
T ss_pred CCCCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccc
Confidence 67788899999999999999999999999999999999999987652222 11358899888 6777654322
Q ss_pred cCHH----HHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhh
Q 012735 72 DDLV----AFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPL 147 (457)
Q Consensus 72 ~~~~----~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~ 147 (457)
.+.. ..+....+.+...+++++++ . ++++||+|.+..|+..+|+++|||++.++++++.....+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~---~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 153 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLET----S---KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSS 153 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHh----C---CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHh
Confidence 2221 23334444555555554443 2 78999999999999999999999999999999887776543221
Q ss_pred hhhcCCCCCCCCCCCccccCC-C-----CCCCCCCCCCCC--CCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHH
Q 012735 148 LKERGYFPIQDSKGQEPVVEL-P-----PLKIKDLPVINT--RDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALAT 219 (457)
Q Consensus 148 ~~~~~~~p~~~~~~~~~~~~~-~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~ 219 (457)
.......+...... ..++++ + .++..+++.... .........+.+......+++.+++||+.+||...++.
T Consensus 154 ~~~~~~~~~~~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~ 232 (472)
T PLN02670 154 LMEGGDLRSTAEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDL 232 (472)
T ss_pred hhhcccCCCccccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHH
Confidence 11111111111111 112222 1 133344443221 11111222233333445678899999999999999999
Q ss_pred HHhhcCCCccccCccccCC-CCCCCCCc--cCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEE
Q 012735 220 LRQQFSIPIFPIGPFHICI-PASPSSLL--TQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLW 296 (457)
Q Consensus 220 ~~~~~~~p~~~vGp~~~~~-~~~~~~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 296 (457)
+++.+..|++.|||+.... ........ ..++++.+|||++++++||||||||....+.+++.+++.+|+.++++|||
T Consensus 233 l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlW 312 (472)
T PLN02670 233 LSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFW 312 (472)
T ss_pred HHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEE
Confidence 9885556899999997531 11000001 11356899999988899999999999999999999999999999999999
Q ss_pred EECCCCCCCCCCCCCCchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHH
Q 012735 297 VVRPGLTRGSDCLEPLPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVN 375 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~n 375 (457)
++.............+|++|.++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.|
T Consensus 313 v~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~N 392 (472)
T PLN02670 313 VLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLN 392 (472)
T ss_pred EEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHH
Confidence 9985321110112358999999998888875 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceecCC-----CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 376 ARYVSDVWKVGLQLEN-----GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 376 a~~v~~~lG~g~~l~~-----~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
|+++++ +|+|+.++. .++.++|+++|+++|.+++|++||+||+++++.++ +.++..++++.+++++.++.
T Consensus 393 a~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l~~~~ 467 (472)
T PLN02670 393 TRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYLRENR 467 (472)
T ss_pred HHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHHHHhc
Confidence 999999 699999964 38999999999999988666799999999999999 78889999999999998876
No 6
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=3.2e-62 Score=468.94 Aligned_cols=422 Identities=30% Similarity=0.529 Sum_probs=334.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCC--CCCCCeeEEecCCCCCCCC-CCccCHHHHHHH
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNP--SSHPHLTFHFIQENLSASE-ASTDDLVAFVSL 80 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~--~~~~g~~~~~i~~~~~~~~-~~~~~~~~~~~~ 80 (457)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....+++++.+|++++++. ....+...++..
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 4667999999999999999999999999999999999998654322 1124699999999988732 333345566666
Q ss_pred HHHhcchhHHHHHHHHhhccCCCCe-eEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCC
Q 012735 81 LNTKCLVPFRDCLAKLLADVEEEPI-ACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDS 159 (457)
Q Consensus 81 ~~~~~~~~~~~~l~~l~~~~~~~~p-Dlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 159 (457)
+...+...++++++++.... +| |+||+|.+..|+..+|+++|||++.++++++.....+.. +... . .
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~---~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~-~-------~ 150 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQSTD---NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYIN-N-------G 150 (449)
T ss_pred HHHhhhHHHHHHHHHhhccC---CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhc-c-------C
Confidence 66677888888777664322 45 999999999999999999999999999988777654432 1111 1 0
Q ss_pred CCCccccCCCCCCCCCCCCCCCC--CChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccC
Q 012735 160 KGQEPVVELPPLKIKDLPVINTR--DPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHIC 237 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~ 237 (457)
.....+|+++.++..+++..... ......+.+.+..+....++.+++||+.+||+..++.+++. .|++.|||+...
T Consensus 151 ~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~VGPl~~~ 228 (449)
T PLN02173 151 SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTIGPTVPS 228 (449)
T ss_pred CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEEcccCch
Confidence 11123677777777777754321 12223343434445567889999999999999998888762 479999999742
Q ss_pred C-------CCCCC--CCc--cCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCC
Q 012735 238 I-------PASPS--SLL--TQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGS 306 (457)
Q Consensus 238 ~-------~~~~~--~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 306 (457)
. ..... ..+ ..++++.+||+.+++++||||||||....+.+++.+++.+| .+.+|+|++....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~~~---- 302 (449)
T PLN02173 229 MYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRASE---- 302 (449)
T ss_pred hhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEeccc----
Confidence 1 00000 011 22345899999998889999999999999999999999999 5778999997532
Q ss_pred CCCCCCchhHHHhh-cCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhcc
Q 012735 307 DCLEPLPSGFMEMV-DGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKV 385 (457)
Q Consensus 307 ~~~~~lp~~~~~~~-~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~ 385 (457)
...+|+++.++. ++|+++++|+||.+||+|+++++||||||+||++||+.+|||||++|+++||+.||+++++.+|+
T Consensus 303 --~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~ 380 (449)
T PLN02173 303 --ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKV 380 (449)
T ss_pred --hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCc
Confidence 234888998887 57889999999999999999999999999999999999999999999999999999999974688
Q ss_pred ceecCC-----CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 386 GLQLEN-----GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 386 g~~l~~-----~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
|+.+.. .++.++|+++|++++.+++++++|++|++++++.++++.++||+.++++++++.+.
T Consensus 381 Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 381 GVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred eEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 888853 25999999999999988777899999999999999999999999999999998874
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.2e-61 Score=466.58 Aligned_cols=439 Identities=26% Similarity=0.443 Sum_probs=333.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCCC-----CC----CCCCCeeEEecCCCCCCCC-CCccC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQG--FTITIIHTSFNSP-----NP----SSHPHLTFHFIQENLSASE-ASTDD 73 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~-----~~----~~~~g~~~~~i~~~~~~~~-~~~~~ 73 (457)
+.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. .. ....+++++.+|+...... ....+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 36999999999999999999999999998 9999999986541 01 1113699999996432111 11234
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhcc---CCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhh
Q 012735 74 LVAFVSLLNTKCLVPFRDCLAKLLADV---EEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKE 150 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~ 150 (457)
....+..+...+...+++.+.++++.. .+ .+++||+|.+..|+..+|+++|||++.++++++.....+.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~~ 161 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDGV-KVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRHS 161 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCCC-CeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhccc
Confidence 444454455566555555555554422 11 34999999999999999999999999999999988777665432211
Q ss_pred c-CCCCCCCCCCCccccCC-CCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhh-cCCC
Q 012735 151 R-GYFPIQDSKGQEPVVEL-PPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQ-FSIP 227 (457)
Q Consensus 151 ~-~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~-~~~p 227 (457)
. ...+.........+|++ +.++..+++..... ... ...+.+......+++.+++|++++||.+.++.++.. ..++
T Consensus 162 ~~~~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~-~~~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~ 239 (468)
T PLN02207 162 KDTSVFVRNSEEMLSIPGFVNPVPANVLPSALFV-EDG-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLDEQNYPS 239 (468)
T ss_pred cccccCcCCCCCeEECCCCCCCCChHHCcchhcC-Ccc-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHhccCCCc
Confidence 1 11111111111347887 57888888754321 111 333334444577889999999999999988888552 2345
Q ss_pred ccccCccccCCCCCCC-CCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCC
Q 012735 228 IFPIGPFHICIPASPS-SLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGS 306 (457)
Q Consensus 228 ~~~vGp~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 306 (457)
++.|||++........ .....++++.+||+++++++||||||||....+.+++++++.+|+.++++|||++.......
T Consensus 240 v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~- 318 (468)
T PLN02207 240 VYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTN- 318 (468)
T ss_pred EEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccc-
Confidence 9999999864321000 01112356999999988889999999999999999999999999999999999998532111
Q ss_pred CCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccc
Q 012735 307 DCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVG 386 (457)
Q Consensus 307 ~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g 386 (457)
.+.+|++|+++.++|+.+++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+|+|
T Consensus 319 --~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG 396 (468)
T PLN02207 319 --DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLA 396 (468)
T ss_pred --cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCce
Confidence 234899999999999999999999999999999999999999999999999999999999999999999876536999
Q ss_pred eecC------C--CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhccc
Q 012735 387 LQLE------N--GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLET 451 (457)
Q Consensus 387 ~~l~------~--~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (457)
+.+. . .++.++|+++|+++|.+ ++++||+||+++++.+++++.++|||.++++++++.+...++
T Consensus 397 v~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~~~~ 468 (468)
T PLN02207 397 VELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIGIKT 468 (468)
T ss_pred EEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhccC
Confidence 9662 1 35999999999999972 238999999999999999999999999999999999987653
No 8
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=9.1e-62 Score=468.22 Aligned_cols=430 Identities=28% Similarity=0.502 Sum_probs=327.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCCCCCCC----CCCCCeeEEecCC----CCCCCCCCccCHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILH-SQGFTITIIHTSFNSPNP----SSHPHLTFHFIQE----NLSASEASTDDLV 75 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~~~~~~----~~~~g~~~~~i~~----~~~~~~~~~~~~~ 75 (457)
.+.||+++|++++||++|++.||+.|+ ++|+.|||++++.+.... ....+++++.+|. ++++.. .+..
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~ 80 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVV 80 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHH
Confidence 567999999999999999999999998 789999999998764221 1113688888884 443111 1222
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCC
Q 012735 76 AFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFP 155 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 155 (457)
..+..........+++++.++ .. +|++||+|.+..|+..+|+++|||++.++++++...+...+.+........+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~----~~-~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 81 TKIGVIMREAVPTLRSKIAEM----HQ-KPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHHhHHHHHHHHHhc----CC-CCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 222223333444455544443 22 7899999999999999999999999999999998776655443221111101
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhh--c----CCCcc
Q 012735 156 IQDSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQ--F----SIPIF 229 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~--~----~~p~~ 229 (457)
.........+|+++.++..+++.............+.+.......++.+++||+.+||...++.++.. + ..|++
T Consensus 156 ~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~ 235 (481)
T PLN02992 156 HTVQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVY 235 (481)
T ss_pred cccCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceE
Confidence 00011123467777777777763222222233444455555667889999999999999999888652 1 24699
Q ss_pred ccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCC-----
Q 012735 230 PIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTR----- 304 (457)
Q Consensus 230 ~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~----- 304 (457)
.|||+...... . ..++++.+||+++++++||||||||...++.+++++++.+|+.++++|||++......
T Consensus 236 ~VGPl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~ 310 (481)
T PLN02992 236 PIGPLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSA 310 (481)
T ss_pred EecCccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccc
Confidence 99999753211 1 2345689999998889999999999999999999999999999999999999632100
Q ss_pred ---------CCCCCCCCchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhH
Q 012735 305 ---------GSDCLEPLPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKV 374 (457)
Q Consensus 305 ---------~~~~~~~lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~ 374 (457)
..+..+.+|++|.+|..+++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.
T Consensus 311 ~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 390 (481)
T PLN02992 311 YFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNM 390 (481)
T ss_pred cccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHH
Confidence 00001248999999998877665 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hhhccceecCC---CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHHHHh
Q 012735 375 NARYVS-DVWKVGLQLEN---GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWK--QGRSSFESINSLVTHILS 448 (457)
Q Consensus 375 na~~v~-~~lG~g~~l~~---~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 448 (457)
||++++ + +|+|+.++. .++.++|+++|++++.+++++++|+++++++++.++++. ++|||.++++++++.+.+
T Consensus 391 na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~ 469 (481)
T PLN02992 391 NAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQR 469 (481)
T ss_pred HHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence 999995 7 799999975 489999999999999887778999999999999999994 599999999999887765
No 9
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=2.6e-61 Score=466.90 Aligned_cols=424 Identities=29% Similarity=0.535 Sum_probs=325.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHH--HHHCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCCCCCccCHHHHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANI--LHSQGFTITIIHTSFNSPNPSS----HPHLTFHFIQENLSASEASTDDLVAFV 78 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~--L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i~~~~~~~~~~~~~~~~~~ 78 (457)
.+.||+++|++++||++|++.||++ |+++|+.|||++++.+...... ...+++..++++++++.. .+...++
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~~~ 84 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPETLL 84 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHHHH
Confidence 4679999999999999999999999 5699999999999865433221 245788778888876542 2333445
Q ss_pred HHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCC
Q 012735 79 SLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQD 158 (457)
Q Consensus 79 ~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 158 (457)
..+.+.+...+.+.+ +.. +||+||+|.+..|+..+|+++|||.+.++++++..+....+..... ...+...
T Consensus 85 ~~~~~~~~~~l~~~l----~~~---~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~--~~~~~~~ 155 (456)
T PLN02210 85 KSLNKVGAKNLSKII----EEK---RYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKT--NSFPDLE 155 (456)
T ss_pred HHHHHhhhHHHHHHH----hcC---CCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhcc--CCCCccc
Confidence 545444444444433 332 8999999999999999999999999999998888877665432211 1111111
Q ss_pred C-CCCccccCCCCCCCCCCCCCCCCCChh-HHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCcccc
Q 012735 159 S-KGQEPVVELPPLKIKDLPVINTRDPET-LYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHI 236 (457)
Q Consensus 159 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~ 236 (457)
. .-...+|+++.++..+++......... +...+.+..+....++.+++|++.++|...++.+++ ..++++|||++.
T Consensus 156 ~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--~~~v~~VGPl~~ 233 (456)
T PLN02210 156 DLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD--LKPVIPIGPLVS 233 (456)
T ss_pred ccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh--cCCEEEEcccCc
Confidence 0 011236777667777776433222221 223333444455677899999999999999988877 257999999974
Q ss_pred CC---CCC----CC---CCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCC
Q 012735 237 CI---PAS----PS---SLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGS 306 (457)
Q Consensus 237 ~~---~~~----~~---~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 306 (457)
.. ... .. ..+..++++.+|++.+++++||||||||....+.+++++++.+|+..+.+|||++....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~---- 309 (456)
T PLN02210 234 PFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKE---- 309 (456)
T ss_pred hhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCc----
Confidence 21 100 00 01234556899999988889999999999988999999999999999999999997432
Q ss_pred CCCCCCchhHHHhh-cCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhcc
Q 012735 307 DCLEPLPSGFMEMV-DGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKV 385 (457)
Q Consensus 307 ~~~~~lp~~~~~~~-~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~ 385 (457)
....++.+.++. ++|+.+++|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++++.+|+
T Consensus 310 --~~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~ 387 (456)
T PLN02210 310 --KAQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGI 387 (456)
T ss_pred --cccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCe
Confidence 111345566666 47888889999999999999999999999999999999999999999999999999999863599
Q ss_pred ceecCC-----CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 386 GLQLEN-----GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 386 g~~l~~-----~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
|+.+.. .++.++|+++|++++.+++|+++|+||++|++..++++.++|||.++++++++.+.
T Consensus 388 G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 388 GVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred EEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999853 48999999999999988667789999999999999999999999999999998874
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.2e-61 Score=465.59 Aligned_cols=438 Identities=26% Similarity=0.448 Sum_probs=327.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCC----CCCCeeEEecC----CCCCCCCCCccCH-
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPS----SHPHLTFHFIQ----ENLSASEASTDDL- 74 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~----~~~g~~~~~i~----~~~~~~~~~~~~~- 74 (457)
.++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ...+++++.+| ++++++.+...+.
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~~~~ 86 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVKDLP 86 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChhhcc
Confidence 46799999999999999999999999999999999999997753221 11357776654 2455544322221
Q ss_pred ---HHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhc
Q 012735 75 ---VAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKER 151 (457)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 151 (457)
...+......+...+.+.+.+. .. ++++||+|.+..|+..+|+++|||++.++++++..+..+.+.....+.
T Consensus 87 ~~~~~~~~~a~~~~~~~~~~~l~~~----~~-~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~~~~ 161 (477)
T PLN02863 87 PSGFPLMIHALGELYAPLLSWFRSH----PS-PPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWREMPT 161 (477)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHhC----CC-CCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhcccc
Confidence 1223333333444444444432 22 789999999999999999999999999999999988887664321110
Q ss_pred CCCCCCC-CCC-CccccCCCCCCCCCCCCCCCC--CChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcC-C
Q 012735 152 GYFPIQD-SKG-QEPVVELPPLKIKDLPVINTR--DPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFS-I 226 (457)
Q Consensus 152 ~~~p~~~-~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~-~ 226 (457)
...+... ... ...+|+++.++..+++..... ......+.+.+.......++.+++||+.+||+..++.+++.+. .
T Consensus 162 ~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~ 241 (477)
T PLN02863 162 KINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKELGHD 241 (477)
T ss_pred cccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhcCCC
Confidence 0000000 011 123677777777777743311 1222333333333345567889999999999999999988665 5
Q ss_pred CccccCccccCCCCC------CCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECC
Q 012735 227 PIFPIGPFHICIPAS------PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRP 300 (457)
Q Consensus 227 p~~~vGp~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 300 (457)
|++.|||+....... +......++++.+||+.+++++||||||||....+.+++.+++.+|+.+++++||+++.
T Consensus 242 ~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~ 321 (477)
T PLN02863 242 RVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKE 321 (477)
T ss_pred CeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECC
Confidence 699999997532110 00011124569999999988999999999999988999999999999999999999975
Q ss_pred CCCCCCCCCCCCchhHHHhhcCCCc-cccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHH
Q 012735 301 GLTRGSDCLEPLPSGFMEMVDGRGH-LVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYV 379 (457)
Q Consensus 301 ~~~~~~~~~~~lp~~~~~~~~~~~~-~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v 379 (457)
..... .....+|+++.++..++.. +.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++
T Consensus 322 ~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v 400 (477)
T PLN02863 322 PVNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400 (477)
T ss_pred Ccccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHH
Confidence 32111 0023589999888865554 459999999999999999999999999999999999999999999999999997
Q ss_pred HhhhccceecCC----CCCHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 380 SDVWKVGLQLEN----GLKREEIEKTIRRVM-VEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 380 ~~~lG~g~~l~~----~~~~~~l~~ai~~il-~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
.+.+|+|+.+.. ..+.+++.+++++++ ++ +.||+||+++++..++++.++||+.++++++++.+.++.
T Consensus 401 ~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~~---~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~~ 473 (477)
T PLN02863 401 VDELKVAVRVCEGADTVPDSDELARVFMESVSEN---QVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVELG 473 (477)
T ss_pred HHhhceeEEeccCCCCCcCHHHHHHHHHHHhhcc---HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHhc
Confidence 643799999943 358999999999988 45 899999999999999999999999999999999998764
No 11
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=8.3e-61 Score=469.08 Aligned_cols=439 Identities=28% Similarity=0.477 Sum_probs=320.9
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC--------CC----CeeEEecC---CCCC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS--------HP----HLTFHFIQ---ENLS 65 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~--------~~----g~~~~~i~---~~~~ 65 (457)
|+ +++.||+++|++++||++|++.||+.|+.||++|||++++.+.....+ .. .+...++| .+++
T Consensus 1 ~~-~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP 79 (482)
T PLN03007 1 MN-HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLP 79 (482)
T ss_pred CC-CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCC
Confidence 45 567899999999999999999999999999999999999865422111 01 34445555 4566
Q ss_pred CCCCCcc--------CHHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHH
Q 012735 66 ASEASTD--------DLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGAS 137 (457)
Q Consensus 66 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~ 137 (457)
++.+... ....++..+. .....+.+.++++++.. +||+||+|.++.|+..+|+++|||++.+++++++
T Consensus 80 ~g~e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~---~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 80 EGCENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLETT---RPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred CCcccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhcC---CCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 5432211 1223333333 23334455556665543 8999999999999999999999999999998887
Q ss_pred HHHHHHhhhhhhhcCCCCCCCCCCCccccCCC---CCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhH
Q 012735 138 SFVVFAAFPLLKERGYFPIQDSKGQEPVVELP---PLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEE 214 (457)
Q Consensus 138 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~ 214 (457)
............+....+... ....+++++ .++..+++.. .....+.+.+....+...+++.+++|++.++|.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~--~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~ 231 (482)
T PLN03007 156 SLCASYCIRVHKPQKKVASSS--EPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELES 231 (482)
T ss_pred HHHHHHHHHhcccccccCCCC--ceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHH
Confidence 666544322111111111100 011244544 2223333321 122234445555555677888999999999999
Q ss_pred HHHHHHHhhcCCCccccCccccCCCCC------CCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHh
Q 012735 215 SALATLRQQFSIPIFPIGPFHICIPAS------PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLA 288 (457)
Q Consensus 215 ~~~~~~~~~~~~p~~~vGp~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~ 288 (457)
...+.+++....++++|||+....... +......++++.+||+++++++||||||||....+.+.+.+++.+|+
T Consensus 232 ~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~ 311 (482)
T PLN03007 232 AYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLE 311 (482)
T ss_pred HHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHH
Confidence 888888775556799999976432110 00111123568999999888999999999999888899999999999
Q ss_pred hCCCCeEEEECCCCCCCCCCCCCCchhHHHhhc-CCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccC
Q 012735 289 NCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD-GRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMP 367 (457)
Q Consensus 289 ~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P 367 (457)
.++++|||++....... +....+|+++.++.. .|+++.+|+||.+||+|+++++||||||+||++||+++|||||++|
T Consensus 312 ~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P 390 (482)
T PLN03007 312 GSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWP 390 (482)
T ss_pred HCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeecc
Confidence 99999999998542110 002348999988875 4555669999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhccceec--------CC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012735 368 CFTDQKVNARYVSDVWKVGLQL--------EN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFES 438 (457)
Q Consensus 368 ~~~DQ~~na~~v~~~lG~g~~l--------~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 438 (457)
+++||+.||+++++.+++|+.+ +. .++.++|+++|++++.+++++.||+||+++++..++++.++||+.++
T Consensus 391 ~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS~~~ 470 (482)
T PLN03007 391 VGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSSFND 470 (482)
T ss_pred chhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999999886423455443 33 57999999999999998666799999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 012735 439 INSLVTHILSL 449 (457)
Q Consensus 439 ~~~~~~~~~~~ 449 (457)
++++++.+.+.
T Consensus 471 l~~~v~~~~~~ 481 (482)
T PLN03007 471 LNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHhc
Confidence 99999998765
No 12
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.1e-60 Score=467.50 Aligned_cols=431 Identities=28% Similarity=0.470 Sum_probs=326.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCCCC-------CC---C--CCCeeEEecCCCCCCCCCCc
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQG--FTITIIHTSFNSPN-------PS---S--HPHLTFHFIQENLSASEAST 71 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~-------~~---~--~~g~~~~~i~~~~~~~~~~~ 71 (457)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+... .. . ..+++++.+|++.+.... .
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-~ 80 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-D 80 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc-c
Confidence 57999999999999999999999999998 88999999865321 11 0 236999999976542211 1
Q ss_pred cCHHHHHHHHHHhcchhHHHHHHHHhhc----cCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhh
Q 012735 72 DDLVAFVSLLNTKCLVPFRDCLAKLLAD----VEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPL 147 (457)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~ 147 (457)
. . +..+...+...+++.++++... ..+ ..++||+|.++.|+..+|+++|||++.++++++..+..+.+.+.
T Consensus 81 ~---~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 81 P---T-FQSYIDNQKPKVRDAVAKLVDDSSTPSSP-RLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred h---H-HHHHHHHHHHHHHHHHHHHHhhhccCCCC-CeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1 2 2223334455555555555432 111 24899999999999999999999999999999999888776544
Q ss_pred hhhcCCCCC---CCCCCCccccCCC-CCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhh
Q 012735 148 LKERGYFPI---QDSKGQEPVVELP-PLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQ 223 (457)
Q Consensus 148 ~~~~~~~p~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 223 (457)
.......+. .+......+|+++ .++..+++.... .+.+...+.+..+....++.+++|++.++|......+.+.
T Consensus 156 ~~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~ 233 (481)
T PLN02554 156 LYDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLL--SKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGS 233 (481)
T ss_pred hccccccCccccCCCCceeECCCCCCCCCHHHCCCccc--CHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhc
Confidence 321111111 1111112366663 566666664331 1233444444455677889999999999999888777653
Q ss_pred --cCCCccccCcccc-CCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECC
Q 012735 224 --FSIPIFPIGPFHI-CIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRP 300 (457)
Q Consensus 224 --~~~p~~~vGp~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 300 (457)
..++++.|||+.. ..+... ...+..+++.+|++++++++||||||||+...+.+++++++.+|+.+++++||++..
T Consensus 234 ~~~~~~v~~vGpl~~~~~~~~~-~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~ 312 (481)
T PLN02554 234 SGDLPPVYPVGPVLHLENSGDD-SKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRR 312 (481)
T ss_pred ccCCCCEEEeCCCccccccccc-cccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 2246999999943 322100 001223469999999888899999999998889999999999999999999999975
Q ss_pred CCC------CC--CCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchh
Q 012735 301 GLT------RG--SDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQ 372 (457)
Q Consensus 301 ~~~------~~--~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ 372 (457)
... .+ .+....+|++|.++.++|+++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||
T Consensus 313 ~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ 392 (481)
T PLN02554 313 ASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQ 392 (481)
T ss_pred CcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccc
Confidence 310 00 0001236999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHH-HHHHhhhccceecC------------CCCCHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012735 373 KVNA-RYVSDVWKVGLQLE------------NGLKREEIEKTIRRVMV-EKQGEEIRSRIFRLKEKANHSWKQGRSSFES 438 (457)
Q Consensus 373 ~~na-~~v~~~lG~g~~l~------------~~~~~~~l~~ai~~il~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 438 (457)
+.|| .++++ +|+|+.++ ..++.++|+++|+++|+ | ++||+||++++++++.++.++||+.++
T Consensus 393 ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss~~~ 468 (481)
T PLN02554 393 KFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSSHTA 468 (481)
T ss_pred hhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 9999 55778 79999985 15799999999999997 6 899999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 012735 439 INSLVTHILSL 449 (457)
Q Consensus 439 ~~~~~~~~~~~ 449 (457)
++++++.+..+
T Consensus 469 l~~lv~~~~~~ 479 (481)
T PLN02554 469 LKKFIQDVTKN 479 (481)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 13
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=1.8e-60 Score=455.08 Aligned_cols=422 Identities=21% Similarity=0.318 Sum_probs=321.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC---CC---CeeEEecC--CCCCCCCCCccCH-
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS---HP---HLTFHFIQ--ENLSASEASTDDL- 74 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~---~~---g~~~~~i~--~~~~~~~~~~~~~- 74 (457)
+.|.||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .. .+.+.++| ++++++.+...+.
T Consensus 3 ~~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~ 82 (453)
T PLN02764 3 GLKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIP 82 (453)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCC
Confidence 468999999999999999999999999999999999999866432211 11 26777777 6777653322111
Q ss_pred ---HHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhc
Q 012735 75 ---VAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKER 151 (457)
Q Consensus 75 ---~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 151 (457)
...+......+...+.+++++ . +||+||+|+ ..|+..+|+++|||++.++++++.....+.. +.
T Consensus 83 ~~~~~~~~~a~~~~~~~~~~~l~~----~---~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~---- 149 (453)
T PLN02764 83 VTSADLLMSAMDLTRDQVEVVVRA----V---EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG---- 149 (453)
T ss_pred hhHHHHHHHHHHHhHHHHHHHHHh----C---CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc----
Confidence 122333333334444444433 2 789999996 8899999999999999999999987776642 10
Q ss_pred CCCCCCCCCCCccccCCC----CCCCCCCCCCCC----CCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhh
Q 012735 152 GYFPIQDSKGQEPVVELP----PLKIKDLPVINT----RDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQ 223 (457)
Q Consensus 152 ~~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~ 223 (457)
..++ ..+|+++ .++..+++.... .........+....+....++.+++||+.+||+..++++++.
T Consensus 150 ~~~~-------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~ 222 (453)
T PLN02764 150 GELG-------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH 222 (453)
T ss_pred ccCC-------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh
Confidence 1110 1124444 234444432110 111123334444445567788999999999999999999874
Q ss_pred cCCCccccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCC
Q 012735 224 FSIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLT 303 (457)
Q Consensus 224 ~~~p~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 303 (457)
..+|++.|||+...... ....++++.+|||++++++||||||||....+.+.+.+++.+|+..+.+++|++..+..
T Consensus 223 ~~~~v~~VGPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~ 298 (453)
T PLN02764 223 CRKKVLLTGPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRG 298 (453)
T ss_pred cCCcEEEeccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 44569999999754311 11123568999999999999999999999989999999999999999999999985321
Q ss_pred CCCCCCCCCchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhh
Q 012735 304 RGSDCLEPLPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDV 382 (457)
Q Consensus 304 ~~~~~~~~lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~ 382 (457)
.. +....+|++|+++..+++.++ +|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.
T Consensus 299 ~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~ 377 (453)
T PLN02764 299 SS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDE 377 (453)
T ss_pred Cc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHH
Confidence 11 012359999999998888777 9999999999999999999999999999999999999999999999999999643
Q ss_pred hccceecCC----CCCHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccccc
Q 012735 383 WKVGLQLEN----GLKREEIEKTIRRVMVE--KQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLETFTF 454 (457)
Q Consensus 383 lG~g~~l~~----~~~~~~l~~ai~~il~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (457)
+|+|+.+.. .++.++|+++|+++|++ ++++.+|+++++++++++ ++||+.++++++++.+.++..-|-
T Consensus 378 ~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~~~~~~~ 451 (453)
T PLN02764 378 LKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQDLVSGTS 451 (453)
T ss_pred hceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHHhccccc
Confidence 799998743 47999999999999987 347889999999999998 899999999999999998876543
No 14
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1.5e-60 Score=457.60 Aligned_cols=425 Identities=28% Similarity=0.482 Sum_probs=320.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEE--EeCCCCCCC--------CCCCCCeeEEecCCCCCCCC--CCc
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQG--FTITI--IHTSFNSPN--------PSSHPHLTFHFIQENLSASE--AST 71 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~--~~~~~~~~~--------~~~~~g~~~~~i~~~~~~~~--~~~ 71 (457)
+.||+++|++++||++|++.||+.|+.+| +.||+ .++..+... ....++++++.+|++.+... ...
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~ 82 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTSR 82 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCccccc
Confidence 45999999999999999999999999998 55666 444333211 11124699999997654222 122
Q ss_pred cCHHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhc
Q 012735 72 DDLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKER 151 (457)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~ 151 (457)
.+...++..+...+...+.+.+.++... + .+++||+|.+..|+..+|+++|||++.++++++..+..+.+.+.....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~-pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~~ 159 (451)
T PLN03004 83 HHHESLLLEILCFSNPSVHRTLFSLSRN--F-NVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDET 159 (451)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHhcCCC--C-CceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcccc
Confidence 2333444445556667777777665321 1 469999999999999999999999999999999988887664432111
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcC-CCccc
Q 012735 152 GYFPIQDSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFS-IPIFP 230 (457)
Q Consensus 152 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~-~p~~~ 230 (457)
...+.....-...+|+++.++..+++...........+.+.........++.+++||+.+||...++.+++.+. +|++.
T Consensus 160 ~~~~~~~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~~~~~v~~ 239 (451)
T PLN03004 160 TPGKNLKDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEELCFRNIYP 239 (451)
T ss_pred ccccccccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcCCCCCEEE
Confidence 00000000111346778777888887544222233344555555566778899999999999999999977433 46999
Q ss_pred cCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCC--CC
Q 012735 231 IGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGS--DC 308 (457)
Q Consensus 231 vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~--~~ 308 (457)
|||+....... ......+.++.+||+++++++||||||||....+.+++++++.+|+.++++|||++........ ..
T Consensus 240 vGPl~~~~~~~-~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~ 318 (451)
T PLN03004 240 IGPLIVNGRIE-DRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELD 318 (451)
T ss_pred EeeeccCcccc-ccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccc
Confidence 99997532210 0111123458999999988999999999999899999999999999999999999985311000 00
Q ss_pred CCC-CchhHHHhhcCCCc-cccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccc
Q 012735 309 LEP-LPSGFMEMVDGRGH-LVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVG 386 (457)
Q Consensus 309 ~~~-lp~~~~~~~~~~~~-~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g 386 (457)
... +|++|++|..++.. +.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.||+++++.+|+|
T Consensus 319 ~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g 398 (451)
T PLN03004 319 LKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIA 398 (451)
T ss_pred hhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCce
Confidence 122 88999999986654 4599999999999999999999999999999999999999999999999999997537999
Q ss_pred eecCC----CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHH
Q 012735 387 LQLEN----GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFE 437 (457)
Q Consensus 387 ~~l~~----~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~ 437 (457)
+.++. .++.++|+++|++++++ ++||++++++++..+.++.++|||.+
T Consensus 399 ~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 399 ISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred EEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 99964 46999999999999998 89999999999999999999999864
No 15
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.1e-60 Score=461.48 Aligned_cols=437 Identities=29% Similarity=0.459 Sum_probs=334.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCC----CeEEEEeCCCCCC----C--------CCCCCCeeEEecCCCCCCCCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQG----FTITIIHTSFNSP----N--------PSSHPHLTFHFIQENLSASEA 69 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~G----h~Vt~~~~~~~~~----~--------~~~~~g~~~~~i~~~~~~~~~ 69 (457)
|.||+++|++++||++|++.||+.|+.+| +.|||+++..+.. . .....+++++.+|++.++..
T Consensus 3 ~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~- 81 (480)
T PLN00164 3 APTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPTD- 81 (480)
T ss_pred CCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCCc-
Confidence 55999999999999999999999999997 7899999875421 0 01012589999997643211
Q ss_pred CccCHHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhh
Q 012735 70 STDDLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLK 149 (457)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~ 149 (457)
..+...++..+...+...+++++.++ .+ ++++||+|.+..|+..+|+++|||++.++++++.....+.+.+...
T Consensus 82 -~e~~~~~~~~~~~~~~~~l~~~L~~l----~~-pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 155 (480)
T PLN00164 82 -AAGVEEFISRYIQLHAPHVRAAIAGL----SC-PVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPALD 155 (480)
T ss_pred -cccHHHHHHHHHHhhhHHHHHHHHhc----CC-CceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhhc
Confidence 11333445545556666666665554 12 5699999999999999999999999999999999888777654321
Q ss_pred hcCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhc-----
Q 012735 150 ERGYFPIQDSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQF----- 224 (457)
Q Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~----- 224 (457)
.....+.........+|+++.++..+++.......+...+.+....+...+++.+++||+.+||+..+..++...
T Consensus 156 ~~~~~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~ 235 (480)
T PLN00164 156 EEVAVEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCTPGR 235 (480)
T ss_pred ccccCcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhccccccC
Confidence 111001111001123678777787888754322222223333334455677889999999999999998887742
Q ss_pred -CCCccccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCC
Q 012735 225 -SIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLT 303 (457)
Q Consensus 225 -~~p~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 303 (457)
.++++.|||+...... ....+.++++.+||+.+++++||||||||....+.+++.+++.+|+.++++|||++.....
T Consensus 236 ~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~ 313 (480)
T PLN00164 236 PAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPA 313 (480)
T ss_pred CCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 1359999999743211 1122345679999999988999999999998888899999999999999999999985321
Q ss_pred CC------CCCCCCCchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHH
Q 012735 304 RG------SDCLEPLPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNA 376 (457)
Q Consensus 304 ~~------~~~~~~lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na 376 (457)
.+ .+....+|+++.++..+++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||
T Consensus 314 ~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na 393 (480)
T PLN00164 314 AGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNA 393 (480)
T ss_pred cccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHH
Confidence 00 0001238899999998888877 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccceecCC------CCCHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 377 RYVSDVWKVGLQLEN------GLKREEIEKTIRRVMVEK--QGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 377 ~~v~~~lG~g~~l~~------~~~~~~l~~ai~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+++.+.+|+|+.+.. .++.++|+++|+++|.++ +++.+|++|+++++++++++.++||+.++++++++.+.+
T Consensus 394 ~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v~~~~~ 473 (480)
T PLN00164 394 FELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLAREIRH 473 (480)
T ss_pred HHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 887543799999852 269999999999999863 478899999999999999999999999999999999987
Q ss_pred ccc
Q 012735 449 LET 451 (457)
Q Consensus 449 ~~~ 451 (457)
...
T Consensus 474 ~~~ 476 (480)
T PLN00164 474 GAV 476 (480)
T ss_pred ccC
Confidence 653
No 16
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=3.2e-60 Score=456.23 Aligned_cols=418 Identities=23% Similarity=0.363 Sum_probs=309.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCC----CCeeEEec--C--CCCCCCCCCccCHHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSH----PHLTFHFI--Q--ENLSASEASTDDLVA 76 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~----~g~~~~~i--~--~~~~~~~~~~~~~~~ 76 (457)
.+.||+++|++++||++|++.||+.|+++||+|||+++..+....... .++++..+ + ++++++.....+...
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~~ 82 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIPI 82 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchhH
Confidence 568999999999999999999999999999999999987544322111 24455544 3 466655432222222
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCC
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPI 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 156 (457)
.+..+.......+.+.++++++.. ++|+||+| ++.|+..+|+.+|||++.++++++.... +.+.+. ...+
T Consensus 83 ~l~~~~~~~~~~~~~~l~~~L~~~---~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~~- 152 (442)
T PLN02208 83 SMDNLLSEALDLTRDQVEAAVRAL---RPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKLG- 152 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhC---CCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----cccC-
Confidence 222222222223334444554443 78999999 5789999999999999999999887654 332211 0000
Q ss_pred CCCCCCccccCCCC----CCCCCCCCCCCCCChhHHHH-HHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCcccc
Q 012735 157 QDSKGQEPVVELPP----LKIKDLPVINTRDPETLYEI-VNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPI 231 (457)
Q Consensus 157 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~v 231 (457)
..+|+++. ++..+++.. ......... ..+..+...+++.+++||+.+||+..++.++..+.++++.|
T Consensus 153 ------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~v 224 (442)
T PLN02208 153 ------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLT 224 (442)
T ss_pred ------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEE
Confidence 11344443 334444422 111122222 22333456678999999999999999988887555669999
Q ss_pred CccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCC
Q 012735 232 GPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEP 311 (457)
Q Consensus 232 Gp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~ 311 (457)
||++..... ..+.++++.+|||.+++++||||||||...++.+.+.+++.+++..+.+++|++..+.... .....
T Consensus 225 Gpl~~~~~~----~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~-~~~~~ 299 (442)
T PLN02208 225 GPMFPEPDT----SKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGSS-TVQEG 299 (442)
T ss_pred eecccCcCC----CCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccc-chhhh
Confidence 999865321 1122356999999988889999999999998999899988888777888888887531110 00235
Q ss_pred CchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecC
Q 012735 312 LPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLE 390 (457)
Q Consensus 312 lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~ 390 (457)
+|++|.++..++..++ +|+||.+||+|+++++|||||||||++||+++|||||++|+++||+.||+++++.+|+|+.++
T Consensus 300 lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~ 379 (442)
T PLN02208 300 LPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVS 379 (442)
T ss_pred CCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEec
Confidence 8999999987665555 999999999999999999999999999999999999999999999999998665369999997
Q ss_pred C-C---CCHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 391 N-G---LKREEIEKTIRRVMVEK--QGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 391 ~-~---~~~~~l~~ai~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
. . ++.++|+++|+++++++ +++.+|++++++++.+. ++|||.++++++++.+.++
T Consensus 380 ~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 380 REKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred cccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 6 3 89999999999999874 37889999999999986 6889999999999999764
No 17
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=9.2e-60 Score=451.53 Aligned_cols=431 Identities=26% Similarity=0.453 Sum_probs=326.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCCCCCC------CC---CCCeeEEecCCCCCCCC-CCccCH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQ-GFTITIIHTSFNSPNP------SS---HPHLTFHFIQENLSASE-ASTDDL 74 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~~------~~---~~g~~~~~i~~~~~~~~-~~~~~~ 74 (457)
+.||+++|++++||++|++.||+.|+.+ |..|||+++..+.... .. ..+++++.+|....++. ....+.
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 3499999999999999999999999987 9999999876433211 11 12588999985432221 111133
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCC-eEEEecchHHHHHHHHhhhhhhhcCC
Q 012735 75 VAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLP-RIVLRTGGASSFVVFAAFPLLKERGY 153 (457)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP-~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (457)
...+..+...+...++++++++. . ++++||+|.+..|+..+|+++||| .+.+.+++++....+.+.+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~l~~l~----~-~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~ 157 (470)
T PLN03015 83 FTKMVVKMRAMKPAVRDAVKSMK----R-KPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE 157 (470)
T ss_pred HHHHHHHHHhchHHHHHHHHhcC----C-CCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc
Confidence 33344444566666676666553 2 689999999999999999999999 57777887777666655443211100
Q ss_pred CCCCCCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhc------CCC
Q 012735 154 FPIQDSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQF------SIP 227 (457)
Q Consensus 154 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~------~~p 227 (457)
.+.....-...+|+++.++..+++.............+.+..+....++.+++||+.+||+..++.+++.+ .+|
T Consensus 158 ~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~~ 237 (470)
T PLN03015 158 GEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKVP 237 (470)
T ss_pred cccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCCc
Confidence 00001011124788888888888743322222222233333345778999999999999999999887742 246
Q ss_pred ccccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCC----
Q 012735 228 IFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLT---- 303 (457)
Q Consensus 228 ~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~---- 303 (457)
++.|||+..... ....++++.+|||++++++||||||||....+.+++++++.+|+.++++|||++.....
T Consensus 238 v~~VGPl~~~~~-----~~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~ 312 (470)
T PLN03015 238 VYPIGPIVRTNV-----HVEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGA 312 (470)
T ss_pred eEEecCCCCCcc-----cccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccccc
Confidence 999999984321 11123469999999988999999999999999999999999999999999999963210
Q ss_pred --C-CCCCCCCCchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHH
Q 012735 304 --R-GSDCLEPLPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYV 379 (457)
Q Consensus 304 --~-~~~~~~~lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v 379 (457)
. ..+..+.+|+++.+|..+++.++ +|+||.+||+|+++++||||||+||++|++++|||||++|++.||+.||+++
T Consensus 313 ~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~ 392 (470)
T PLN03015 313 SSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLL 392 (470)
T ss_pred ccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHH
Confidence 0 00012258999999999888765 9999999999999999999999999999999999999999999999999998
Q ss_pred HhhhccceecC----C-CCCHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 380 SDVWKVGLQLE----N-GLKREEIEKTIRRVMVE--KQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 380 ~~~lG~g~~l~----~-~~~~~~l~~ai~~il~~--~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
++.+|+|+.+. . .++.++|+++|++++.+ ++|+++|+||++++++.++++.++|||.++++++++.+
T Consensus 393 ~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 393 TEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 54489999995 2 58999999999999963 45789999999999999999999999999999999876
No 18
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=8.1e-60 Score=453.06 Aligned_cols=424 Identities=28% Similarity=0.475 Sum_probs=330.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCCC-C-CCC---CCCCeeEEecCCCCCCCCC-CccCHHHHHH
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHS-QGFTITIIHTSFNS-P-NPS---SHPHLTFHFIQENLSASEA-STDDLVAFVS 79 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~~~-~-~~~---~~~g~~~~~i~~~~~~~~~-~~~~~~~~~~ 79 (457)
.||+++|++++||++|++.||+.|+. +|+.|||++++.+. . ... ...+++++.++++++++.. ...+....+.
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~~~ 83 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLV 83 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHHHH
Confidence 49999999999999999999999996 69999999997442 1 111 1136999999988877542 2334555666
Q ss_pred HHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCC
Q 012735 80 LLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDS 159 (457)
Q Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 159 (457)
.+...+...+.++++++.... . ++++||+|.+..|+..+|+++|||++.++++++.....+++.....
T Consensus 84 ~~~~~~~~~l~~~l~~l~~~~-~-pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~---------- 151 (455)
T PLN02152 84 NFERNGDKALSDFIEANLNGD-S-PVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN---------- 151 (455)
T ss_pred HHHHhccHHHHHHHHHhhccC-C-CceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC----------
Confidence 677788888888887764321 1 5699999999999999999999999999999998887765532110
Q ss_pred CCCccccCCCCCCCCCCCCCCCC--CChhHHHHHHhhhhccc--cccEEEEcCchhhhHHHHHHHHhhcCCCccccCccc
Q 012735 160 KGQEPVVELPPLKIKDLPVINTR--DPETLYEIVNGMVDGAK--VSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFH 235 (457)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~ 235 (457)
.....+|+++.++..+++..... ....+.+.+....+... .++.+++||+.+||+..++.++. .|++.|||+.
T Consensus 152 ~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~v~~VGPL~ 228 (455)
T PLN02152 152 NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IEMVAVGPLL 228 (455)
T ss_pred CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CCEEEEcccC
Confidence 01124677777777777754321 12223344434333332 24689999999999999888865 3799999997
Q ss_pred cCCC--CCC-CC--C-ccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCC-----
Q 012735 236 ICIP--ASP-SS--L-LTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTR----- 304 (457)
Q Consensus 236 ~~~~--~~~-~~--~-~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~----- 304 (457)
.... ... .. . ...+.++.+||+++++++||||||||....+.+++++++.+|+.++++|||++......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~ 308 (455)
T PLN02152 229 PAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIE 308 (455)
T ss_pred ccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccc
Confidence 5321 100 00 1 12234699999998888999999999999999999999999999999999999753110
Q ss_pred CCC-CCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhh
Q 012735 305 GSD-CLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVW 383 (457)
Q Consensus 305 ~~~-~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~l 383 (457)
... ....+|+++.++.++|+++.+|+||.+||+|+++++||||||+||+.|++++|||||++|++.||+.||+++++.+
T Consensus 309 ~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~ 388 (455)
T PLN02152 309 GEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIW 388 (455)
T ss_pred cccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHh
Confidence 000 0013578999999999999999999999999999999999999999999999999999999999999999998734
Q ss_pred ccceecC--C--CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 384 KVGLQLE--N--GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 384 G~g~~l~--~--~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
|+|+.+. . .++.++|+++|+++|+| ++..||+||++++++.+++..++||+.++++++++.+
T Consensus 389 ~~G~~~~~~~~~~~~~e~l~~av~~vm~~-~~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 389 KTGVRVRENSEGLVERGEIRRCLEAVMEE-KSVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred CceEEeecCcCCcCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 6666653 2 46999999999999975 2356999999999999999999999999999999876
No 19
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=9.6e-60 Score=456.06 Aligned_cols=440 Identities=27% Similarity=0.508 Sum_probs=321.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC------C--CCeeEEecC-----CCCCCCCCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS------H--PHLTFHFIQ-----ENLSASEAS 70 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~------~--~g~~~~~i~-----~~~~~~~~~ 70 (457)
+++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...... . ..++++.+| +++|++.+.
T Consensus 6 ~~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~ 85 (491)
T PLN02534 6 AKQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCEN 85 (491)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCccc
Confidence 345799999999999999999999999999999999999876422111 0 238899888 577765432
Q ss_pred ccCH--HHHHHHH---HHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhh
Q 012735 71 TDDL--VAFVSLL---NTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAF 145 (457)
Q Consensus 71 ~~~~--~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~ 145 (457)
..+. ..++..+ ...+...+.+ +++.... ++|+||+|.+..|+..+|+.+|||++.+++++++.......+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~l~~----lL~~~~~-pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~ 160 (491)
T PLN02534 86 LDTLPSRDLLRKFYDAVDKLQQPLER----FLEQAKP-PPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNI 160 (491)
T ss_pred cccCCcHHHHHHHHHHHHHhHHHHHH----HHHhcCC-CCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHH
Confidence 2211 1223222 2233344444 4333222 689999999999999999999999999999988876654322
Q ss_pred hhhhhcCCCCCCCCCCCccccCCCC---CCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHh
Q 012735 146 PLLKERGYFPIQDSKGQEPVVELPP---LKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQ 222 (457)
Q Consensus 146 ~~~~~~~~~p~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 222 (457)
.. .....+.........+|+++. ++..+++...... ...........+....++.+++||+.+||+..++.+++
T Consensus 161 ~~--~~~~~~~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~ 237 (491)
T PLN02534 161 RL--HNAHLSVSSDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEK 237 (491)
T ss_pred HH--hcccccCCCCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHh
Confidence 11 111111111111223566653 5555555322111 11222222233233456789999999999999999988
Q ss_pred hcCCCccccCccccCCCCCC-----CCCcc-CccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEE
Q 012735 223 QFSIPIFPIGPFHICIPASP-----SSLLT-QDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLW 296 (457)
Q Consensus 223 ~~~~p~~~vGp~~~~~~~~~-----~~~~~-~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 296 (457)
.+..|++.|||+........ ..... .++++.+||+.+++++||||||||......+.+.+++.+|+.++.+|||
T Consensus 238 ~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW 317 (491)
T PLN02534 238 AIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIW 317 (491)
T ss_pred hcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEE
Confidence 66667999999974321100 00011 2345899999998899999999999998999999999999999999999
Q ss_pred EECCCCCCCCCCCCCCchhHHHhhc-CCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHH
Q 012735 297 VVRPGLTRGSDCLEPLPSGFMEMVD-GRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVN 375 (457)
Q Consensus 297 ~~~~~~~~~~~~~~~lp~~~~~~~~-~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~n 375 (457)
++..+..........+|++|.++.. .++++.+|+||.+||+|+++++||||||+||++||+++|||||++|++.||+.|
T Consensus 318 ~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~n 397 (491)
T PLN02534 318 VIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLN 397 (491)
T ss_pred EEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHH
Confidence 9984321110001136899988864 455556999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccceecC-------------C-CCCHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHHHHHHhcCCChHHHH
Q 012735 376 ARYVSDVWKVGLQLE-------------N-GLKREEIEKTIRRVMV--EKQGEEIRSRIFRLKEKANHSWKQGRSSFESI 439 (457)
Q Consensus 376 a~~v~~~lG~g~~l~-------------~-~~~~~~l~~ai~~il~--~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~ 439 (457)
|+++++.+|+|+.+. . .++.++|+++|++++. .++|+.+|+||++|++..++++.++|||.+.+
T Consensus 398 a~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl 477 (491)
T PLN02534 398 EKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINL 477 (491)
T ss_pred HHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 999886589999873 1 2789999999999997 34578999999999999999999999999999
Q ss_pred HHHHHHHHhccc
Q 012735 440 NSLVTHILSLET 451 (457)
Q Consensus 440 ~~~~~~~~~~~~ 451 (457)
+++++.+.+..+
T Consensus 478 ~~fv~~i~~~~~ 489 (491)
T PLN02534 478 SILIQDVLKQQS 489 (491)
T ss_pred HHHHHHHHHHhc
Confidence 999999986543
No 20
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=9.4e-60 Score=453.54 Aligned_cols=419 Identities=21% Similarity=0.312 Sum_probs=311.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC----CCCeeEEec--C--CCCCCCCCCccCHHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS----HPHLTFHFI--Q--ENLSASEASTDDLVA 76 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i--~--~~~~~~~~~~~~~~~ 76 (457)
++.||+++|++++||++|++.||+.|+++|++|||++++.+...... ..++++..+ | ++++++.+...+...
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 67899999999999999999999999999999999999855432211 124777544 3 567765433222221
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCC
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPI 156 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 156 (457)
............+...++++++.. +||+||+|. +.|+..+|+++|||++.++++++.....+.+ +. .....
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~~---~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~--~~~~~-- 153 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRAL---KPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PR--AELGF-- 153 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC---CCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cH--hhcCC--
Confidence 111122222223444455555443 789999996 8899999999999999999999988777654 11 10000
Q ss_pred CCCCCCccccCCCC----CCCCCC--CCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccc
Q 012735 157 QDSKGQEPVVELPP----LKIKDL--PVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFP 230 (457)
Q Consensus 157 ~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~ 230 (457)
.+|+++. ++..+. +... .. ....+.+..+...+++.+++||+.+||+..++.+++.++.|++.
T Consensus 154 -------~~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~v~~ 222 (446)
T PLN00414 154 -------PPPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQCQRKVLL 222 (446)
T ss_pred -------CCCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhcCCCeEE
Confidence 1233332 111111 1111 11 12334444455667899999999999999999998755567999
Q ss_pred cCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCC
Q 012735 231 IGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLE 310 (457)
Q Consensus 231 vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 310 (457)
|||+...... ......++++.+|||++++++||||||||....+.+.+.+++.+|+..+.+|+|++......+ +...
T Consensus 223 VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~-~~~~ 299 (446)
T PLN00414 223 TGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGSS-TVQE 299 (446)
T ss_pred EcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCcc-cchh
Confidence 9999753321 001112345889999999999999999999999999999999999999999999997532111 0023
Q ss_pred CCchhHHHhhcCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceec
Q 012735 311 PLPSGFMEMVDGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQL 389 (457)
Q Consensus 311 ~lp~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l 389 (457)
.+|++|.+++++++.++ +|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+|+|+.+
T Consensus 300 ~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~ 379 (446)
T PLN00414 300 ALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKV 379 (446)
T ss_pred hCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEe
Confidence 58999999999998887 99999999999999999999999999999999999999999999999999996337999999
Q ss_pred CC----CCCHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 390 EN----GLKREEIEKTIRRVMVEK--QGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 390 ~~----~~~~~~l~~ai~~il~~~--~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
.. .++.++|+++++++|.++ +++.+|++|+++++.+. +.||+...++++++.+++..
T Consensus 380 ~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~----~~gg~ss~l~~~v~~~~~~~ 442 (446)
T PLN00414 380 QREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLV----SPGLLSGYADKFVEALENEV 442 (446)
T ss_pred ccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHH----cCCCcHHHHHHHHHHHHHhc
Confidence 64 389999999999999863 36789999999999986 45554455899988886654
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.4e-58 Score=451.91 Aligned_cols=440 Identities=27% Similarity=0.430 Sum_probs=324.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCC---eEEEEeCCCCCC---------CCCCCCCeeEEecCCCCCC-CCCC-
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGF---TITIIHTSFNSP---------NPSSHPHLTFHFIQENLSA-SEAS- 70 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh---~Vt~~~~~~~~~---------~~~~~~g~~~~~i~~~~~~-~~~~- 70 (457)
++.||+++|++++||++|++.||+.|+.+|. .||++++..+.. .....++++++.+|++..+ +.+.
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 3559999999999999999999999999983 567766543211 0111136999999965422 1110
Q ss_pred ccCHHHHHHHHHHhcchhHHHHHHHHhhcc---CCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhh
Q 012735 71 TDDLVAFVSLLNTKCLVPFRDCLAKLLADV---EEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPL 147 (457)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~ 147 (457)
.......+..+...+...+++.++++.... ..-++++||+|.+..|+..+|+++|||++.++++++..+..+.+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~~ 161 (475)
T PLN02167 82 VKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLPE 161 (475)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHHH
Confidence 112222333444555666666666664321 11035999999999999999999999999999999988777665443
Q ss_pred hhhcCCCCCCCC--CCCccccCC-CCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhc
Q 012735 148 LKERGYFPIQDS--KGQEPVVEL-PPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQF 224 (457)
Q Consensus 148 ~~~~~~~p~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 224 (457)
............ .-...+|++ +.++..+++...... ...+.+.+..+....++.+++||+.+||+..++.+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~~ 239 (475)
T PLN02167 162 RHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDYFSRLP 239 (475)
T ss_pred hccccccccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHHHhhc
Confidence 211100000000 111236676 346666665322111 112333344445677899999999999999998887632
Q ss_pred C--CCccccCccccCCCCCCCCCc--cCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECC
Q 012735 225 S--IPIFPIGPFHICIPASPSSLL--TQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRP 300 (457)
Q Consensus 225 ~--~p~~~vGp~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 300 (457)
. ++++.|||++...... .... ..++++.+||+.+++++||||||||....+.+.+.+++.+|+.++++|||++..
T Consensus 240 ~~~p~v~~vGpl~~~~~~~-~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~ 318 (475)
T PLN02167 240 ENYPPVYPVGPILSLKDRT-SPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRT 318 (475)
T ss_pred ccCCeeEEecccccccccc-CCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 1 4599999998643210 0111 123569999999888899999999998889999999999999999999999975
Q ss_pred CCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHH-H
Q 012735 301 GLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARY-V 379 (457)
Q Consensus 301 ~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~-v 379 (457)
......+....+|++|.++..+++++++|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||++ +
T Consensus 319 ~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~ 398 (475)
T PLN02167 319 NPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV 398 (475)
T ss_pred CcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHH
Confidence 321100002348999999999999999999999999999999999999999999999999999999999999999976 6
Q ss_pred HhhhccceecCC--------CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 380 SDVWKVGLQLEN--------GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 380 ~~~lG~g~~l~~--------~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
+. +|+|+.+.. .++.++|+++|+++|.++ +.||+||+++++.+++++.++||+.++++++++.+..-+
T Consensus 399 ~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i~~~~ 474 (475)
T PLN02167 399 KE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDLLGDH 474 (475)
T ss_pred HH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 67 799998852 369999999999999762 489999999999999999999999999999999997654
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=9.8e-53 Score=412.48 Aligned_cols=410 Identities=19% Similarity=0.203 Sum_probs=287.7
Q ss_pred CcEEEEE-cCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCC-CCCCCCCCeeEEecCCCCCC------CCC---C---c
Q 012735 6 GRRLVLF-PLPLQGHISPMLQLANILHSQGFTITIIHTSFNS-PNPSSHPHLTFHFIQENLSA------SEA---S---T 71 (457)
Q Consensus 6 ~~~il~~-~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~~~~~~g~~~~~i~~~~~~------~~~---~---~ 71 (457)
..||+++ |.++.||+.-+.+++++|++|||+||++++.... ....+..+++.+.++..... ... . .
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGVV 99 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhhh
Confidence 3457655 8889999999999999999999999999885211 11112356777666421110 000 0 0
Q ss_pred cCH----HHHHHHHHHhcchhHHH-HHHHHhhccCCCCeeEEEeCCCcchHHHHHhHc-CCCeEEEecchHHHHHHHHhh
Q 012735 72 DDL----VAFVSLLNTKCLVPFRD-CLAKLLADVEEEPIACLISDAMLPFTQAVADSL-KLPRIVLRTGGASSFVVFAAF 145 (457)
Q Consensus 72 ~~~----~~~~~~~~~~~~~~~~~-~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l-~iP~v~~~~~~~~~~~~~~~~ 145 (457)
.+. ......+...|...+.+ .+.++++.-+. ++|+||+|.+..|+..+|+++ ++|.|.+++...........-
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~-kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~~~~g 178 (507)
T PHA03392 100 ADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNN-KFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENFETMG 178 (507)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCC-ceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHHHhhc
Confidence 000 11122334566666653 44555541111 899999999889999999999 999988887655443333222
Q ss_pred hhhhhcCCCCCCCCCCC------ccccCCCCCCCCCCC-CCCCCCChhH-HHHHHh----hhhccccccEEEEcCchhhh
Q 012735 146 PLLKERGYFPIQDSKGQ------EPVVELPPLKIKDLP-VINTRDPETL-YEIVNG----MVDGAKVSSGIIWNTFEDLE 213 (457)
Q Consensus 146 ~~~~~~~~~p~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~le 213 (457)
+.|.+++|+|.....+. +|+.++......... .......+.+ .+.++. +.+...+.+++++|+++.++
T Consensus 179 g~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~~~d 258 (507)
T PHA03392 179 AVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHPVFD 258 (507)
T ss_pred cCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCcccc
Confidence 37888889987654443 333332100000000 0000111122 222221 34455777899999999998
Q ss_pred HHHHHHHHhhcCCCccccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEeccccc---CCHHHHHHHHHHHhhC
Q 012735 214 ESALATLRQQFSIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAA---VSEAEFLEIAWGLANC 290 (457)
Q Consensus 214 ~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~---~~~~~~~~~~~al~~~ 290 (457)
++ ++ +++.+++|||++.+... ..+.++++.+|++.+ ++++||+||||... .+.++++.+++++++.
T Consensus 259 ~~-----rp-~~p~v~~vGgi~~~~~~----~~~l~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l 327 (507)
T PHA03392 259 NN-----RP-VPPSVQYLGGLHLHKKP----PQPLDDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKL 327 (507)
T ss_pred CC-----CC-CCCCeeeecccccCCCC----CCCCCHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhC
Confidence 86 22 33449999999875321 123344589999876 45899999999864 5788999999999999
Q ss_pred CCCeEEEECCCCCCCCCCCC-CCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCcc
Q 012735 291 KLPFLWVVRPGLTRGSDCLE-PLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCF 369 (457)
Q Consensus 291 ~~~~i~~~~~~~~~~~~~~~-~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~ 369 (457)
+.++||++.... .. .+| +|+++.+|+||.+||+|++|++||||||+||+.||+++|||+|++|++
T Consensus 328 ~~~viw~~~~~~------~~~~~p--------~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP~~ 393 (507)
T PHA03392 328 PYNVLWKYDGEV------EAINLP--------ANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMM 393 (507)
T ss_pred CCeEEEEECCCc------CcccCC--------CceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECCCC
Confidence 999999997542 11 244 455999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 370 TDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 370 ~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
+||+.||+|+++ +|+|+.++. .++.++|+++|+++++| ++||+||+++++.+++ ++..+.++++.-++..++
T Consensus 394 ~DQ~~Na~rv~~-~G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~--~p~~~~~~av~~iE~v~r 466 (507)
T PHA03392 394 GDQFYNTNKYVE-LGIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH--QPMTPLHKAIWYTEHVIR 466 (507)
T ss_pred ccHHHHHHHHHH-cCcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHh
Confidence 999999999999 599999998 89999999999999999 9999999999999994 112356677766644443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=9.3e-55 Score=435.12 Aligned_cols=384 Identities=26% Similarity=0.377 Sum_probs=232.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCC-CCCCCCCeeEEecCCCCCCCCC--Ccc------------
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSP-NPSSHPHLTFHFIQENLSASEA--STD------------ 72 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~-~~~~~~g~~~~~i~~~~~~~~~--~~~------------ 72 (457)
||+++|. ++||+.++..|+++|++|||+||++++..... ......++++..++.+.+.... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 7888885 77999999999999999999999999853211 1112245666666654433221 000
Q ss_pred --CHHHHH-------HHHHHhcchhHHH--HHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHH
Q 012735 73 --DLVAFV-------SLLNTKCLVPFRD--CLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVV 141 (457)
Q Consensus 73 --~~~~~~-------~~~~~~~~~~~~~--~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~ 141 (457)
.....+ ......|...+.+ +++.+... ++|++|+|.+..|+..+|+.+++|.+.+.+........
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~----~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~~ 156 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSE----KFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDLS 156 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHH----HHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCCT
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh----ccccceEeeccchhHHHHHHhcCCeEEEecccccchhh
Confidence 011111 1122333322221 22223222 89999999988999999999999998765443221111
Q ss_pred HHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCCCC-------------CCCCCCChhHHHHHHhhhhccccccEEEEcC
Q 012735 142 FAAFPLLKERGYFPIQDSKGQEPVVELPPLKIKDLP-------------VINTRDPETLYEIVNGMVDGAKVSSGIIWNT 208 (457)
Q Consensus 142 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (457)
....+.+.+++|+|...+.+...+....++. +.. .............-....+.+.+.+++++|+
T Consensus 157 ~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~--N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns 234 (500)
T PF00201_consen 157 SFSGGVPSPPSYVPSMFSDFSDRMSFWQRIK--NFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINS 234 (500)
T ss_dssp CCTSCCCTSTTSTTCBCCCSGTTSSSST--T--TSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSST
T ss_pred hhccCCCCChHHhccccccCCCccchhhhhh--hhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhc
Confidence 1112556677777765544333322221100 000 0000000000000001122234456678888
Q ss_pred chhhhHHHHHHHHhhcCCCccccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEeccccc-CCHHHHHHHHHHH
Q 012735 209 FEDLEESALATLRQQFSIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAA-VSEAEFLEIAWGL 287 (457)
Q Consensus 209 ~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~al 287 (457)
.+.++++. + +.+.++++|+++...++ ++|. ++..|++..+++++|||||||... .+.+..+.+++++
T Consensus 235 ~~~ld~pr-----p-~~p~v~~vGgl~~~~~~----~l~~--~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~ 302 (500)
T PF00201_consen 235 HPSLDFPR-----P-LLPNVVEVGGLHIKPAK----PLPE--ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAF 302 (500)
T ss_dssp EEE----H-----H-HHCTSTTGCGC-S--------TCHH--HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHH
T ss_pred cccCcCCc-----c-hhhcccccCcccccccc----cccc--ccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHH
Confidence 88888762 2 12349999999876543 4444 488999985678999999999986 5556688899999
Q ss_pred hhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccC
Q 012735 288 ANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMP 367 (457)
Q Consensus 288 ~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P 367 (457)
+++++++||++.+.. +.++ ++|+++.+|+||.+||+||++++||||||+||+.||+++|||||++|
T Consensus 303 ~~~~~~~iW~~~~~~----------~~~l----~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P 368 (500)
T PF00201_consen 303 ENLPQRFIWKYEGEP----------PENL----PKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIP 368 (500)
T ss_dssp HCSTTEEEEEETCSH----------GCHH----HTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-G
T ss_pred hhCCCcccccccccc----------cccc----cceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCC
Confidence 999999999997631 1222 45669999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Q 012735 368 CFTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHS 428 (457)
Q Consensus 368 ~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~ 428 (457)
+++||+.||++++++ |+|+.++. ++|.+.|.++|+++|+| ++|++||++++..+++.
T Consensus 369 ~~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~~ 426 (500)
T PF00201_consen 369 LFGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRDR 426 (500)
T ss_dssp CSTTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT--
T ss_pred CcccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhcC
Confidence 999999999999995 99999998 99999999999999999 99999999999999863
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=1.1e-43 Score=344.36 Aligned_cols=378 Identities=16% Similarity=0.232 Sum_probs=254.9
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCC----ccCHHHHHHHHHHhcch
Q 012735 12 FPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEAS----TDDLVAFVSLLNTKCLV 87 (457)
Q Consensus 12 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 87 (457)
+.+|+.||++|+++||++|+++||+|+|++++........ .|+.+++++......... ..+...++..+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999744433333 689999998654331110 02333444444444433
Q ss_pred hHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCccccC
Q 012735 88 PFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPVVE 167 (457)
Q Consensus 88 ~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 167 (457)
.+..+ .++.+.. +||+||+|.+++++..+|+.+|||+|.+++.+... ..++.+. .|. ....+..
T Consensus 80 ~~~~l-~~~~~~~---~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~----~~~~~~~----~~~-~~~~~~~--- 143 (392)
T TIGR01426 80 VLPQL-EEAYKGD---RPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN----EEFEEMV----SPA-GEGSAEE--- 143 (392)
T ss_pred HHHHH-HHHhcCC---CCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc----ccccccc----ccc-chhhhhh---
Confidence 33332 3333333 89999999988899999999999999886543211 0001000 000 0000000
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHHHhhh------hc--cccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCC
Q 012735 168 LPPLKIKDLPVINTRDPETLYEIVNGMV------DG--AKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIP 239 (457)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~ 239 (457)
.... ........+.+.+...+.. .. ....+..+..+.+.++++ ++.++.+++++||+.....
T Consensus 144 -~~~~----~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~~~Gp~~~~~~ 213 (392)
T TIGR01426 144 -GAIA----ERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFTFVGPCIGDRK 213 (392)
T ss_pred -hccc----cchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeEEECCCCCCcc
Confidence 0000 0000000111111111110 00 011122344444445443 3445555999999875432
Q ss_pred CCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHh
Q 012735 240 ASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEM 319 (457)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 319 (457)
. ...|....+++++||+|+||........++.+++++.+.+.+++|..+.... .+.+ +.
T Consensus 214 ~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~---------~~~~-~~ 272 (392)
T TIGR01426 214 E-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD---------PADL-GE 272 (392)
T ss_pred c-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC---------hhHh-cc
Confidence 1 1235555567889999999987656668889999999999999988865421 0111 11
Q ss_pred hcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCCHHHH
Q 012735 320 VDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLKREEI 398 (457)
Q Consensus 320 ~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l 398 (457)
.++|+.+.+|+||.++|+++++ +|||||+||+.||+++|+|+|++|...||..|++++++ +|+|+.+.. .++++.|
T Consensus 273 ~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l~~~~~~~~~l 349 (392)
T TIGR01426 273 LPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHLPPEEVTAEKL 349 (392)
T ss_pred CCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEeccccCCHHHH
Confidence 2455688999999999998888 99999999999999999999999999999999999999 599999987 8899999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 399 EKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 399 ~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
.++|+++++| ++|+++++++++.++ ..++.+++++.+++.++
T Consensus 350 ~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 350 REAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred HHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 9999999999 899999999999998 67778888888877664
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.1e-43 Score=345.89 Aligned_cols=374 Identities=17% Similarity=0.162 Sum_probs=241.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCC-----------ccCHH
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEAS-----------TDDLV 75 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~-----------~~~~~ 75 (457)
|||+|++.|+.||++|+++||++|++|||+|+|++++....... ..|++|+++++........ .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVE-AAGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHH-HcCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 69999999999999999999999999999999999973332222 2689999988643321100 01111
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCC
Q 012735 76 AFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFP 155 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 155 (457)
.....+...+...+.++++.+ +.. +||+||+|.+.+++..+|+++|||++.+++++....... .|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-~~~---~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~-----------~~ 144 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAA-RDW---GPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF-----------PP 144 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-ccc---CCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-----------CC
Confidence 222333334344444333332 222 999999999888899999999999999987753321100 00
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCC--CCCChhHHHHHHhhhhccc---------cccEEEEcCchhhhHHHHHHHHhhc
Q 012735 156 IQDSKGQEPVVELPPLKIKDLPVIN--TRDPETLYEIVNGMVDGAK---------VSSGIIWNTFEDLEESALATLRQQF 224 (457)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~le~~~~~~~~~~~ 224 (457)
.. .. . ........ ......+..........+. .....+....+.+.+. .+++
T Consensus 145 ~~--------~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 207 (401)
T cd03784 145 PL--------GR---A-NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP-----PPDW 207 (401)
T ss_pred cc--------ch---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC-----CCCc
Confidence 00 00 0 00000000 0000001111111111110 0111122122221111 2222
Q ss_pred CCCccccC-ccccCCCCCCCCCccCccccccccCCCCCCcEEEEEeccccc-CCHHHHHHHHHHHhhCCCCeEEEECCCC
Q 012735 225 SIPIFPIG-PFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAA-VSEAEFLEIAWGLANCKLPFLWVVRPGL 302 (457)
Q Consensus 225 ~~p~~~vG-p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~ 302 (457)
+....++| ++...+. ....++++..|++. .+++||||+||... ...+++..++++++..+.+++|.++...
T Consensus 208 ~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~ 280 (401)
T cd03784 208 PRFDLVTGYGFRDVPY-----NGPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGG 280 (401)
T ss_pred cccCcEeCCCCCCCCC-----CCCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcc
Confidence 23355665 3332221 12334456778765 46799999999987 4567788899999998999999987643
Q ss_pred CCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhh
Q 012735 303 TRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDV 382 (457)
Q Consensus 303 ~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~ 382 (457)
... ...++|+++.+|+||.++|+++++ ||||||+||+.||+++|||+|++|+..||+.||+++++
T Consensus 281 ~~~------------~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~- 345 (401)
T cd03784 281 LGA------------EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAE- 345 (401)
T ss_pred ccc------------cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHH-
Confidence 110 122455589999999999988777 99999999999999999999999999999999999999
Q ss_pred hccceecCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012735 383 WKVGLQLEN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 383 lG~g~~l~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (457)
+|+|+.++. .+++++|.+++++++++ + ++++++++++.++ +.++..++++.++
T Consensus 346 ~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~----~~~g~~~~~~~ie 399 (401)
T cd03784 346 LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR----EEDGVPSAADVIE 399 (401)
T ss_pred CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH----hccCHHHHHHHHh
Confidence 599999987 78999999999999997 4 5566777777776 4556666666554
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=9.7e-43 Score=332.98 Aligned_cols=391 Identities=19% Similarity=0.217 Sum_probs=244.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCC--CCccCHHHHHHHHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASE--ASTDDLVAFVSLLNT 83 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~ 83 (457)
+|||+|+..|+.||++|+++|+++|.++||+|+|++++......++ .|+.|..++....+.. +........+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhhhhhhhccchhHHHhh
Confidence 5899999999999999999999999999999999999733333333 4566777764311111 111111111110122
Q ss_pred hcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCc
Q 012735 84 KCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQE 163 (457)
Q Consensus 84 ~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (457)
.......+.++-+.+. .||+++.|.....+ .++...++|++............... +...+... .....
T Consensus 80 ~~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~ 148 (406)
T COG1819 80 QFKKLIRELLELLREL----EPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL-----PLPPVGIA-GKLPI 148 (406)
T ss_pred hhhhhhHHHHHHHHhc----chhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc-----Cccccccc-ccccc
Confidence 2222222222223322 89999999765544 89999999998865553321111100 00000000 00000
Q ss_pred cccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccc---cccEEEEcCchhhhHHHHHHHHhhc----CCC--ccccCcc
Q 012735 164 PVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAK---VSSGIIWNTFEDLEESALATLRQQF----SIP--IFPIGPF 234 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~le~~~~~~~~~~~----~~p--~~~vGp~ 234 (457)
....++......... ..... .....+....+. ..-.-+..+-+.++... ....+ ..| ..++||+
T Consensus 149 ~~~~~~~~~~~~~~~---~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~~~ 221 (406)
T COG1819 149 PLYPLPPRLVRPLIF---ARSWL-PKLVVRRNLGLELGLPNIRRLFASGPLLEIAY---TDVLFPPGDRLPFIGPYIGPL 221 (406)
T ss_pred cccccChhhcccccc---chhhh-hhhhhhhhccccccccchHHHhcCCCCccccc---cccccCCCCCCCCCcCccccc
Confidence 000000000000000 00000 000000000000 00000011111111110 01101 123 5666666
Q ss_pred ccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCch
Q 012735 235 HICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPS 314 (457)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~ 314 (457)
...... ++..|. ..++++||+|+||.... .++++.+++++..++.++|+..+... .. ...+|.
T Consensus 222 ~~~~~~----------~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~-~~---~~~~p~ 284 (406)
T COG1819 222 LGEAAN----------ELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR-DT---LVNVPD 284 (406)
T ss_pred cccccc----------cCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc-cc---cccCCC
Confidence 655432 233332 33678999999999976 88999999999999999999986621 11 344666
Q ss_pred hHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CC
Q 012735 315 GFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GL 393 (457)
Q Consensus 315 ~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~ 393 (457)
|+ ++.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||+.||.|+++ +|+|+.+.. .+
T Consensus 285 n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l~~~~l 353 (406)
T COG1819 285 NV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIALPFEEL 353 (406)
T ss_pred ce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceecCcccC
Confidence 66 89999999999988888 99999999999999999999999999999999999999 699999998 89
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
+++.|+++|+++|+| +.|+++++++++.++ +.++..++++.+++..++..
T Consensus 354 ~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~----~~~g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 354 TEERLRAAVNEVLAD---DSYRRAAERLAEEFK----EEDGPAKAADLLEEFAREKK 403 (406)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHhh----hcccHHHHHHHHHHHHhccc
Confidence 999999999999999 999999999999999 67777778888777666543
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=2e-40 Score=331.96 Aligned_cols=393 Identities=33% Similarity=0.470 Sum_probs=255.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC-CCC--ee--------EEecCCCCCCCCCCc-cC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS-HPH--LT--------FHFIQENLSASEAST-DD 73 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~-~~g--~~--------~~~i~~~~~~~~~~~-~~ 73 (457)
+.+++++++|++||++|+..+|++|+++||+||++++..+...... ... .. +...+++++...... ..
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 5678888888999999999999999999999999998754332221 111 11 111111222221111 01
Q ss_pred HHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcC-CCeEEEecchHHHHHHHHhhhhhhhcC
Q 012735 74 LVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLK-LPRIVLRTGGASSFVVFAAFPLLKERG 152 (457)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~-iP~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (457)
.......+...|...+.+.+..+...... ++|++|+|.+..+...+|.... |+...+.+..+..... +.+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----g~~~~~~ 159 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKSE-KFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLAL----GLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhcC-CccEEEechhhHHHHHhcccceEEEeecccCchHHHHhc----CCcCccc
Confidence 11224556667777777655554433322 4999999997666777776664 8887777665554433 3333333
Q ss_pred CCCCCCCCCC-------ccccCCCCCCCCCCCCCCCC-----CChhHHHHH--------HhhhhccccccEEEEcCchhh
Q 012735 153 YFPIQDSKGQ-------EPVVELPPLKIKDLPVINTR-----DPETLYEIV--------NGMVDGAKVSSGIIWNTFEDL 212 (457)
Q Consensus 153 ~~p~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l 212 (457)
++|....... .+..++ ....++..... ........+ ....+...+.+..++|+.+.+
T Consensus 160 ~~p~~~~~~~~~~~~~~~~~~n~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~ 236 (496)
T KOG1192|consen 160 YVPSPFSLSSGDDMSFPERVPNL---IKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLL 236 (496)
T ss_pred ccCcccCccccccCcHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCccc
Confidence 5544322111 111100 00000000000 000000000 001133455567777777665
Q ss_pred hHHHHHHHHhhcCCCccccCccccCCCCCCCCCccCccccccccCCCCCC--cEEEEEecccc---cCCHHHHHHHHHHH
Q 012735 213 EESALATLRQQFSIPIFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPK--SVIYVSFGSIA---AVSEAEFLEIAWGL 287 (457)
Q Consensus 213 e~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~vv~vs~Gs~~---~~~~~~~~~~~~al 287 (457)
+... ++ ..+++++|||+...... .... ....|++..+.. ++|||||||+. .++.+...+++.++
T Consensus 237 ~~~~----~~-~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l 305 (496)
T KOG1192|consen 237 DFEP----RP-LLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKAL 305 (496)
T ss_pred CCCC----CC-CCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHH
Confidence 5521 10 13449999999987432 1111 234566654443 89999999999 69999999999999
Q ss_pred hhC-CCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhh-hcCCCCCCcccccChhHHHHHHhhCCcccc
Q 012735 288 ANC-KLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEV-LAHPAVGAFWTHNGWNSTLESICEGIPMIC 365 (457)
Q Consensus 288 ~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~l-L~~~~~~~~I~hgG~~s~~eal~~gvP~v~ 365 (457)
+.. +++++|++..... ..+++++.++.++|+...+|+||.+| |.|+++++||||||+||++|++++|||||+
T Consensus 306 ~~~~~~~FiW~~~~~~~------~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~ 379 (496)
T KOG1192|consen 306 ESLQGVTFLWKYRPDDS------IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVC 379 (496)
T ss_pred HhCCCceEEEEecCCcc------hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceec
Confidence 999 7889999986421 11233332222356678899999998 599999999999999999999999999999
Q ss_pred cCccchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Q 012735 366 MPCFTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANH 427 (457)
Q Consensus 366 ~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~ 427 (457)
+|+++||+.||++++++ |.|..+.. +++.+.+.+++.+++.+ ++|+++++++++.+++
T Consensus 380 ~Plf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 380 VPLFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred CCccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 99999999999999997 88888877 67666699999999999 9999999999999884
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=4.7e-26 Score=215.40 Aligned_cols=337 Identities=15% Similarity=0.119 Sum_probs=208.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCC-CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNS-PNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKC 85 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
+||++.+.++.||++|.++||++|.++||+|+|++..... .......|+.+..++..- ... ......+.......
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~---l~~-~~~~~~~~~~~~~~ 77 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGK---LRR-YFDLKNIKDPFLVM 77 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccC---cCC-CchHHHHHHHHHHH
Confidence 4799999999999999999999999999999999976322 222222478887776311 111 11122233333333
Q ss_pred chhHHHHHHHHhhccCCCCeeEEEeCCCc--chHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCc
Q 012735 86 LVPFRDCLAKLLADVEEEPIACLISDAML--PFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQE 163 (457)
Q Consensus 86 ~~~~~~~l~~l~~~~~~~~pDlvi~D~~~--~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (457)
...++. + ++++.. +||+|++.... ..+..+|..+++|++.........
T Consensus 78 ~~~~~~-~-~i~~~~---kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~~g------------------------- 127 (352)
T PRK12446 78 KGVMDA-Y-VRIRKL---KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMTPG------------------------- 127 (352)
T ss_pred HHHHHH-H-HHHHhc---CCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCCcc-------------------------
Confidence 222221 1 222222 99999987644 347889999999998864431110
Q ss_pred cccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcC-CCccccCccccCCCCCC
Q 012735 164 PVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFS-IPIFPIGPFHICIPASP 242 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~-~p~~~vGp~~~~~~~~~ 242 (457)
...+.+.+ .++.++ .++++. .+.++ ..++++|+...+.-.
T Consensus 128 ----------------------~~nr~~~~------~a~~v~-~~f~~~--------~~~~~~~k~~~tG~Pvr~~~~-- 168 (352)
T PRK12446 128 ----------------------LANKIALR------FASKIF-VTFEEA--------AKHLPKEKVIYTGSPVREEVL-- 168 (352)
T ss_pred ----------------------HHHHHHHH------hhCEEE-EEccch--------hhhCCCCCeEEECCcCCcccc--
Confidence 01111111 222222 233321 12233 237888977655321
Q ss_pred CCCccCccccccccCCCCCCcEEEEEecccccCC-HHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhc
Q 012735 243 SSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVS-EAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD 321 (457)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~ 321 (457)
... .+.....+.-.+++++|+|..||.+... .+.+..++..+.. +.+++|.++... +.+... ..
T Consensus 169 --~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------~~~~~~-~~- 233 (352)
T PRK12446 169 --KGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------LDDSLQ-NK- 233 (352)
T ss_pred --ccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---------HHHHHh-hc-
Confidence 001 1111122233346789999999999733 2334444444432 467888876532 111111 11
Q ss_pred CCCcccccc-C-hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCcc-----chhhHHHHHHHhhhccceecCC-CC
Q 012735 322 GRGHLVKWA-P-QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCF-----TDQKVNARYVSDVWKVGLQLEN-GL 393 (457)
Q Consensus 322 ~~~~~~~~v-p-q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~-----~DQ~~na~~v~~~lG~g~~l~~-~~ 393 (457)
.+..+..|+ + -.++++++|+ +|||||.+|+.|++++|+|+|++|+. .||..||+++++ .|+|..+.. .+
T Consensus 234 ~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~-~g~~~~l~~~~~ 310 (352)
T PRK12446 234 EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFER-QGYASVLYEEDV 310 (352)
T ss_pred CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHH-CCCEEEcchhcC
Confidence 233455777 4 3468989998 99999999999999999999999985 489999999999 599999987 89
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+++.|.+++.++++|. +.|++++++ +. ..++++.+++.+++
T Consensus 311 ~~~~l~~~l~~ll~~~--~~~~~~~~~----~~--------~~~aa~~i~~~i~~ 351 (352)
T PRK12446 311 TVNSLIKHVEELSHNN--EKYKTALKK----YN--------GKEAIQTIIDHISE 351 (352)
T ss_pred CHHHHHHHHHHHHcCH--HHHHHHHHH----cC--------CCCHHHHHHHHHHh
Confidence 9999999999999882 245444433 22 23556666666654
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=5.7e-26 Score=214.36 Aligned_cols=305 Identities=18% Similarity=0.193 Sum_probs=188.5
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHH--
Q 012735 7 RRLVLFPLP-LQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNT-- 83 (457)
Q Consensus 7 ~~il~~~~~-~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-- 83 (457)
|||+|...+ |.||+.++++||++| +||+|+|++.......... .+....+++-.........+..........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP--RFPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc--ccCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 688888766 779999999999999 6999999998633222321 245555543222222222333222222221
Q ss_pred -hcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCC
Q 012735 84 -KCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQ 162 (457)
Q Consensus 84 -~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 162 (457)
.....+++.++.+ +.. +||+||+|. .+.+..+|+..|||++.+......... ..
T Consensus 77 ~~~~~~~~~~~~~l-~~~---~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~~----------~~---------- 131 (318)
T PF13528_consen 77 ARLARRIRREIRWL-REF---RPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLHP----------NF---------- 131 (318)
T ss_pred HHHHHHHHHHHHHH-Hhc---CCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHcccc----------cC----------
Confidence 1222233333323 332 999999995 555788999999999998776432100 00
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhh-c-cccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCC
Q 012735 163 EPVVELPPLKIKDLPVINTRDPETLYEIVNGMVD-G-AKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPA 240 (457)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~ 240 (457)
.. ...........+... . ...++..+..++. .... . .....++||+..+...
T Consensus 132 ------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~------~--~~~~~~~~p~~~~~~~ 185 (318)
T PF13528_consen 132 ------------WL-----PWDQDFGRLIERYIDRYHFPPADRRLALSFY-PPLP------P--FFRVPFVGPIIRPEIR 185 (318)
T ss_pred ------------Cc-----chhhhHHHHHHHhhhhccCCcccceecCCcc-cccc------c--cccccccCchhccccc
Confidence 00 001112222222221 1 2333333433332 1000 0 1226678887754332
Q ss_pred CCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCC-CCeEEEECCCCCCCCCCCCCCchhHHHh
Q 012735 241 SPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCK-LPFLWVVRPGLTRGSDCLEPLPSGFMEM 319 (457)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 319 (457)
+.- ..+++.|+|++|..... .++++++..+ ..+++. +... .+..
T Consensus 186 -------------~~~--~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~------~~~~------- 230 (318)
T PF13528_consen 186 -------------ELP--PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA------ADPR------- 230 (318)
T ss_pred -------------ccC--CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc------cccc-------
Confidence 000 12446799999988743 6677777776 454444 3321 0111
Q ss_pred hcCCCcccccc-C-hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCc--cchhhHHHHHHHhhhccceecCC-CCC
Q 012735 320 VDGRGHLVKWA-P-QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC--FTDQKVNARYVSDVWKVGLQLEN-GLK 394 (457)
Q Consensus 320 ~~~~~~~~~~v-p-q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~--~~DQ~~na~~v~~~lG~g~~l~~-~~~ 394 (457)
.+|+.+.+|. + ..++|+.+++ +|+|||+||++|++++|+|+|++|. ..||..||+++++ +|+|+.++. +++
T Consensus 231 -~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~~~~~~~ 306 (318)
T PF13528_consen 231 -PGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVLSQEDLT 306 (318)
T ss_pred -CCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEcccccCC
Confidence 3555777876 3 5679977877 9999999999999999999999999 7899999999999 699999987 899
Q ss_pred HHHHHHHHHHH
Q 012735 395 REEIEKTIRRV 405 (457)
Q Consensus 395 ~~~l~~ai~~i 405 (457)
++.|+++|+++
T Consensus 307 ~~~l~~~l~~~ 317 (318)
T PF13528_consen 307 PERLAEFLERL 317 (318)
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=2.1e-22 Score=189.40 Aligned_cols=304 Identities=15% Similarity=0.146 Sum_probs=164.5
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCee-EEecCCCCCCC-CCCccCHHHHHHHHHHh
Q 012735 8 RLVLFPLP-LQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLT-FHFIQENLSAS-EASTDDLVAFVSLLNTK 84 (457)
Q Consensus 8 ~il~~~~~-~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~-~~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (457)
||++...+ +.||+.|.++||++|.+ ||+|+|++.......... .++. +..+|. +... .....+....+......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-YGFKVFETFPG-IKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-hcCcceeccCC-ceEeecCCcCcHHHHHHhhccc
Confidence 56676655 55999999999999999 999999987542221111 2343 323221 1110 01111222222111011
Q ss_pred cchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCcc
Q 012735 85 CLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEP 164 (457)
Q Consensus 85 ~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 164 (457)
....+.+.. ++++.. +||+||+| +.+.+..+|..+|||++.+..+.... + |.
T Consensus 78 ~~~~~~~~~-~~l~~~---~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~~------~---------~~-------- 129 (321)
T TIGR00661 78 PKKAIRREI-NIIREY---NPDLIISD-FEYSTVVAAKLLKIPVICISNQNYTR------Y---------PL-------- 129 (321)
T ss_pred cHHHHHHHH-HHHHhc---CCCEEEEC-CchHHHHHHHhcCCCEEEEecchhhc------C---------Cc--------
Confidence 112233322 233333 99999999 56667899999999999876532110 0 00
Q ss_pred ccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCcc--ccCccccCCCCCC
Q 012735 165 VVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIF--PIGPFHICIPASP 242 (457)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~--~vGp~~~~~~~~~ 242 (457)
..........+.+..+ ...++.+....++..... .++.. .-+|...
T Consensus 130 --------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------~p~~~~~~~~~~~~------ 177 (321)
T TIGR00661 130 --------------KTDLIVYPTMAALRIF---NERCERFIVPDYPFPYTI---------CPKIIKNMEGPLIR------ 177 (321)
T ss_pred --------------ccchhHHHHHHHHHHh---ccccceEeeecCCCCCCC---------CccccccCCCcccc------
Confidence 0000000001111111 122222222222111000 00110 0011110
Q ss_pred CCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcC
Q 012735 243 SSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDG 322 (457)
Q Consensus 243 ~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~ 322 (457)
.+...+... +++.|++.+|+... ..+++++++.+. +.+++...... ...+ ++
T Consensus 178 -------~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~~----~~~~--------~~ 229 (321)
T TIGR00661 178 -------YDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEVA----KNSY--------NE 229 (321)
T ss_pred -------hhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCCC----cccc--------CC
Confidence 011222221 34557777777542 345677776653 22332221100 1112 34
Q ss_pred CCccccccC--hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccc--hhhHHHHHHHhhhccceecCC-CCCHHH
Q 012735 323 RGHLVKWAP--QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFT--DQKVNARYVSDVWKVGLQLEN-GLKREE 397 (457)
Q Consensus 323 ~~~~~~~vp--q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~--DQ~~na~~v~~~lG~g~~l~~-~~~~~~ 397 (457)
|+.+.+|.| ..++|+.+++ +|||||++|++|++++|+|+|++|... ||..||+.+++ +|+|+.++. ++ +
T Consensus 230 ~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~~~~---~ 303 (321)
T TIGR00661 230 NVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEYKEL---R 303 (321)
T ss_pred CEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcChhhH---H
Confidence 557889997 4567877777 999999999999999999999999854 89999999999 599999987 44 5
Q ss_pred HHHHHHHHhcc
Q 012735 398 IEKTIRRVMVE 408 (457)
Q Consensus 398 l~~ai~~il~~ 408 (457)
+.+++.++++|
T Consensus 304 ~~~~~~~~~~~ 314 (321)
T TIGR00661 304 LLEAILDIRNM 314 (321)
T ss_pred HHHHHHhcccc
Confidence 56677677777
No 31
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=2.2e-21 Score=181.18 Aligned_cols=307 Identities=18% Similarity=0.171 Sum_probs=189.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCCC-CCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHh
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGF-TITIIHTSF-NSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTK 84 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~~~-~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
++|++...++.||+.|.++|+++|.++|+ +|.++.+.. .+.......++.++.++.+-...... . ..++.....
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~---~-~~~~~~~~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGS---L-KLLKAPFKL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCc---H-HHHHHHHHH
Confidence 47888889999999999999999999999 587776652 23333333577888877433322211 1 122222333
Q ss_pred cchhHH--HHHHHHhhccCCCCeeEEEeCCC--cchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCC
Q 012735 85 CLVPFR--DCLAKLLADVEEEPIACLISDAM--LPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSK 160 (457)
Q Consensus 85 ~~~~~~--~~l~~l~~~~~~~~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 160 (457)
+...++ ..+.++ +||+||.-.. +..+..+|..++||.+..-.-...
T Consensus 77 ~~~~~~a~~il~~~-------kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~----------------------- 126 (357)
T COG0707 77 LKGVLQARKILKKL-------KPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP----------------------- 126 (357)
T ss_pred HHHHHHHHHHHHHc-------CCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc-----------------------
Confidence 333222 233344 9999998443 366788999999999985432110
Q ss_pred CCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcC-CCccccCccccCCC
Q 012735 161 GQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFS-IPIFPIGPFHICIP 239 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~-~p~~~vGp~~~~~~ 239 (457)
+ . ..+++.+. ++. +..+++..+.. +. .....+|-.....-
T Consensus 127 ------G---------------~---ank~~~~~------a~~-V~~~f~~~~~~--------~~~~~~~~tG~Pvr~~~ 167 (357)
T COG0707 127 ------G---------------L---ANKILSKF------AKK-VASAFPKLEAG--------VKPENVVVTGIPVRPEF 167 (357)
T ss_pred ------c---------------h---hHHHhHHh------hce-eeecccccccc--------CCCCceEEecCcccHHh
Confidence 0 0 01111111 111 22233221110 01 12566664333221
Q ss_pred CCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC--CCCeEEEECCCCCCCCCCCCCCchhHH
Q 012735 240 ASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC--KLPFLWVVRPGLTRGSDCLEPLPSGFM 317 (457)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~ 317 (457)
. ..+.. -... +...++++|+|+-||.+.. .+-+.+.+++..+ +..+++.++... -+...
T Consensus 168 ~----~~~~~--~~~~-~~~~~~~~ilV~GGS~Ga~--~ln~~v~~~~~~l~~~~~v~~~~G~~~----------~~~~~ 228 (357)
T COG0707 168 E----ELPAA--EVRK-DGRLDKKTILVTGGSQGAK--ALNDLVPEALAKLANRIQVIHQTGKND----------LEELK 228 (357)
T ss_pred h----ccchh--hhhh-hccCCCcEEEEECCcchhH--HHHHHHHHHHHHhhhCeEEEEEcCcch----------HHHHH
Confidence 1 00111 0111 1112578999999999962 2222333444433 345666655431 12222
Q ss_pred Hhhc-CC-CccccccChH-hhhcCCCCCCcccccChhHHHHHHhhCCcccccCcc----chhhHHHHHHHhhhccceecC
Q 012735 318 EMVD-GR-GHLVKWAPQQ-EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCF----TDQKVNARYVSDVWKVGLQLE 390 (457)
Q Consensus 318 ~~~~-~~-~~~~~~vpq~-~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~----~DQ~~na~~v~~~lG~g~~l~ 390 (457)
.... .+ +.+..|++++ ++|+.+|+ +||++|.+|+.|++..|+|+|.+|.- .||..||..++++ |.|..++
T Consensus 229 ~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa~~i~ 305 (357)
T COG0707 229 SAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAALVIR 305 (357)
T ss_pred HHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCEEEec
Confidence 2222 22 4566888865 69988888 99999999999999999999999973 4899999999996 9999999
Q ss_pred C-CCCHHHHHHHHHHHhcc
Q 012735 391 N-GLKREEIEKTIRRVMVE 408 (457)
Q Consensus 391 ~-~~~~~~l~~ai~~il~~ 408 (457)
. .+|++.+.+.|.+++.+
T Consensus 306 ~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 306 QSELTPEKLAELILRLLSN 324 (357)
T ss_pred cccCCHHHHHHHHHHHhcC
Confidence 8 89999999999999998
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=7.3e-20 Score=175.61 Aligned_cols=342 Identities=15% Similarity=0.120 Sum_probs=202.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCC-CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNS-PNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKC 85 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
|||+|++.+..||...++.|++.|.++||+|++++..... .......|++++.++..-.. . ......+......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~~~~l~~~~~~- 76 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLR---R-KGSLANLKAPFKL- 76 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcC---C-CChHHHHHHHHHH-
Confidence 7899999888899999999999999999999999985321 11111146777766531110 1 1111111111111
Q ss_pred chhHHHHHHHHhhccCCCCeeEEEeCCC--cchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCc
Q 012735 86 LVPFRDCLAKLLADVEEEPIACLISDAM--LPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQE 163 (457)
Q Consensus 86 ~~~~~~~l~~l~~~~~~~~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (457)
...+.. +.+++++. +||+|++... ...+..++...++|++.......
T Consensus 77 ~~~~~~-~~~~ik~~---~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~--------------------------- 125 (357)
T PRK00726 77 LKGVLQ-ARKILKRF---KPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV--------------------------- 125 (357)
T ss_pred HHHHHH-HHHHHHhc---CCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC---------------------------
Confidence 111111 22333332 8999999863 34456678888999986421100
Q ss_pred cccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCCCC
Q 012735 164 PVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPS 243 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~ 243 (457)
.....++.. ..++.++..+...+ .+.-..++.++|........
T Consensus 126 --------------------~~~~~r~~~------~~~d~ii~~~~~~~--------~~~~~~~i~vi~n~v~~~~~--- 168 (357)
T PRK00726 126 --------------------PGLANKLLA------RFAKKVATAFPGAF--------PEFFKPKAVVTGNPVREEIL--- 168 (357)
T ss_pred --------------------ccHHHHHHH------HHhchheECchhhh--------hccCCCCEEEECCCCChHhh---
Confidence 000111111 12233333222111 00012337777755433211
Q ss_pred CCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCC--CeEEEECCCCCCCCCCCCCCchhHHHh--
Q 012735 244 SLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKL--PFLWVVRPGLTRGSDCLEPLPSGFMEM-- 319 (457)
Q Consensus 244 ~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~i~~~~~~~~~~~~~~~~lp~~~~~~-- 319 (457)
. +... -.. +...+++++|++..|+... ......+.+++++... .+++.++.+. . +.+.+.
T Consensus 169 ~--~~~~-~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~---------~-~~~~~~~~ 232 (357)
T PRK00726 169 A--LAAP-PAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD---------L-EEVRAAYA 232 (357)
T ss_pred c--ccch-hhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc---------H-HHHHHHhh
Confidence 0 0000 011 1212244567765555432 2233334467665533 3445555432 1 222211
Q ss_pred hcCCCccccccC-hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCc----cchhhHHHHHHHhhhccceecCC-CC
Q 012735 320 VDGRGHLVKWAP-QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC----FTDQKVNARYVSDVWKVGLQLEN-GL 393 (457)
Q Consensus 320 ~~~~~~~~~~vp-q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~----~~DQ~~na~~v~~~lG~g~~l~~-~~ 393 (457)
..-++.+.+|+. ..++|+.+++ +|+|+|.+++.||+++|+|+|++|. .+||..|+..+.+. |.|..+.. ++
T Consensus 233 ~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~~~~~~~ 309 (357)
T PRK00726 233 AGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALLIPQSDL 309 (357)
T ss_pred cCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEEEEcccC
Confidence 222356678884 5689988888 9999999999999999999999997 47899999999995 99999987 77
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
+++.|+++|.++++| +.++++..+-+.+.. +.++..+.++.+++.++
T Consensus 310 ~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 310 TPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred CHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 899999999999999 677666666555554 56667888888777765
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=2.3e-18 Score=164.88 Aligned_cols=323 Identities=15% Similarity=0.111 Sum_probs=184.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC-CCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcc
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPN-PSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCL 86 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~-~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
||++.+.+..||....+.+++.|.++||+|++++....... .....|+++..++..-... ......+........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 76 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRR----KGSLKKLKAPFKLLK 76 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCC----CChHHHHHHHHHHHH
Confidence 58888989889999999999999999999999987532111 1111356666665211101 111111211111111
Q ss_pred hhHHHHHHHHhhccCCCCeeEEEeCCC--cchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCcc
Q 012735 87 VPFRDCLAKLLADVEEEPIACLISDAM--LPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEP 164 (457)
Q Consensus 87 ~~~~~~l~~l~~~~~~~~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 164 (457)
.+. .+.++.++. +||+|++... ...+..+|...++|++.......
T Consensus 77 -~~~-~~~~~i~~~---~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~---------------------------- 123 (350)
T cd03785 77 -GVL-QARKILKKF---KPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV---------------------------- 123 (350)
T ss_pred -HHH-HHHHHHHhc---CCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC----------------------------
Confidence 111 122333332 8999998653 34566788889999986321100
Q ss_pred ccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCCCCC
Q 012735 165 VVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPSS 244 (457)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~~ 244 (457)
+ ....++. ...++.++..+....+. . .+.++.++|........ .
T Consensus 124 -~------------------~~~~~~~------~~~~~~vi~~s~~~~~~-----~---~~~~~~~i~n~v~~~~~---~ 167 (350)
T cd03785 124 -P------------------GLANRLL------ARFADRVALSFPETAKY-----F---PKDKAVVTGNPVREEIL---A 167 (350)
T ss_pred -c------------------cHHHHHH------HHhhCEEEEcchhhhhc-----C---CCCcEEEECCCCchHHh---h
Confidence 0 0001110 12245444443322211 0 02336666654432111 0
Q ss_pred CccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC---CCCeEEEECCCCCCCCCCCCCCchhHHHhhc
Q 012735 245 LLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD 321 (457)
Q Consensus 245 ~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~ 321 (457)
+.. . ...+...+++++|++..|+... ......+++++..+ +..+++.++.+. .+.+.+.+.+. .
T Consensus 168 --~~~-~-~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~~~-~ 234 (350)
T cd03785 168 --LDR-E-RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYEEL-G 234 (350)
T ss_pred --hhh-h-HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHhcc-C
Confidence 000 0 1122222345566666666543 22222233444433 333455554431 11122222211 3
Q ss_pred CCCcccccc-ChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCc----cchhhHHHHHHHhhhccceecCC-CCCH
Q 012735 322 GRGHLVKWA-PQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC----FTDQKVNARYVSDVWKVGLQLEN-GLKR 395 (457)
Q Consensus 322 ~~~~~~~~v-pq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~----~~DQ~~na~~v~~~lG~g~~l~~-~~~~ 395 (457)
+|+++.+|+ +..++|+.+++ +|+++|.+|+.||+.+|+|+|++|. ..+|..|++.+.+. |.|..++. ..++
T Consensus 235 ~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~~~~~ 311 (350)
T cd03785 235 VNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQEELTP 311 (350)
T ss_pred CCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecCCCCH
Confidence 577888888 45679988888 9999999999999999999999986 46799999999995 99999987 5799
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMVEKQGEEIRSRIFRLK 422 (457)
Q Consensus 396 ~~l~~ai~~il~~~~~~~~~~~a~~l~ 422 (457)
+++.++++.+++| +..+++..+-+
T Consensus 312 ~~l~~~i~~ll~~---~~~~~~~~~~~ 335 (350)
T cd03785 312 ERLAAALLELLSD---PERLKAMAEAA 335 (350)
T ss_pred HHHHHHHHHHhcC---HHHHHHHHHHH
Confidence 9999999999988 55444433333
No 34
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.76 E-value=2.8e-16 Score=139.69 Aligned_cols=326 Identities=16% Similarity=0.192 Sum_probs=193.4
Q ss_pred CCcEEEEEcCC--CccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCC--CC----CCccCH
Q 012735 5 KGRRLVLFPLP--LQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSSHPHLTFHFIQENLSA--SE----ASTDDL 74 (457)
Q Consensus 5 ~~~~il~~~~~--~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~--~~----~~~~~~ 74 (457)
+.+||+|.+.. +-||+-.++.||++|++. |.+|++++.........-..|++++.+|.-.-. +. +...+.
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l 87 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDL 87 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCH
Confidence 45699999965 559999999999999998 999999998744444333378999999942221 11 222332
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCC
Q 012735 75 VAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYF 154 (457)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (457)
.+.. +.-...+....+.+ +||++|+|.+-. | ..-+.+ |... .... .+.
T Consensus 88 ~e~~----~~Rs~lil~t~~~f-------kPDi~IVd~~P~-G-lr~EL~--ptL~----------yl~~------~~t- 135 (400)
T COG4671 88 EETK----KLRSQLILSTAETF-------KPDIFIVDKFPF-G-LRFELL--PTLE----------YLKT------TGT- 135 (400)
T ss_pred HHHH----HHHHHHHHHHHHhc-------CCCEEEEecccc-c-hhhhhh--HHHH----------HHhh------cCC-
Confidence 2222 22222222222222 999999996444 4 111110 1000 0000 000
Q ss_pred CCCCCCCCccccCCCCCCCCCCCCCC--CCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCC-----
Q 012735 155 PIQDSKGQEPVVELPPLKIKDLPVIN--TRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIP----- 227 (457)
Q Consensus 155 p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p----- 227 (457)
..+-++. ...+.+... .+..+...+..+ +..|.+++.+.|.+-.+ .+.|+.+
T Consensus 136 --------~~vL~lr--~i~D~p~~~~~~w~~~~~~~~I~------r~yD~V~v~GdP~f~d~-----~~~~~~~~~i~~ 194 (400)
T COG4671 136 --------RLVLGLR--SIRDIPQELEADWRRAETVRLIN------RFYDLVLVYGDPDFYDP-----LTEFPFAPAIRA 194 (400)
T ss_pred --------cceeehH--hhhhchhhhccchhhhHHHHHHH------HhheEEEEecCccccCh-----hhcCCccHhhhh
Confidence 0000000 011111110 011222222222 33455666666654322 3333332
Q ss_pred -ccccCccccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC-CCCeEEEE-CCCCCC
Q 012735 228 -IFPIGPFHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC-KLPFLWVV-RPGLTR 304 (457)
Q Consensus 228 -~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~-~~~~~~ 304 (457)
+.|+|.+..+-+ ..+.|.. . .+.+..|+||-|.-.. ..+.....++|.... +.+-.|.+ .++.
T Consensus 195 k~~ytG~vq~~~~---~~~~p~~-------~-~pE~~~Ilvs~GGG~d-G~eLi~~~l~A~~~l~~l~~~~~ivtGP~-- 260 (400)
T COG4671 195 KMRYTGFVQRSLP---HLPLPPH-------E-APEGFDILVSVGGGAD-GAELIETALAAAQLLAGLNHKWLIVTGPF-- 260 (400)
T ss_pred heeEeEEeeccCc---CCCCCCc-------C-CCccceEEEecCCChh-hHHHHHHHHHHhhhCCCCCcceEEEeCCC--
Confidence 889998822111 1122222 1 1334568888887764 456666666666542 43323333 3332
Q ss_pred CCCCCCCCchhHHHhh----c--CCCccccccChH-hhhcCCCCCCcccccChhHHHHHHhhCCcccccCcc---chhhH
Q 012735 305 GSDCLEPLPSGFMEMV----D--GRGHLVKWAPQQ-EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCF---TDQKV 374 (457)
Q Consensus 305 ~~~~~~~lp~~~~~~~----~--~~~~~~~~vpq~-~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~---~DQ~~ 374 (457)
+|+...++. + +++.+..|-.+. .+++-++. +|+-||+||++|-|++|+|.+++|.. -||..
T Consensus 261 -------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQli 331 (400)
T COG4671 261 -------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPREEQLI 331 (400)
T ss_pred -------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCcHHHHH
Confidence 565443333 3 567778888865 58877777 99999999999999999999999985 59999
Q ss_pred HHHHHHhhhccceecCC-CCCHHHHHHHHHHHhc
Q 012735 375 NARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMV 407 (457)
Q Consensus 375 na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~ 407 (457)
-|+|+++ ||+.-.+.. +++++.++++|...++
T Consensus 332 RA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 332 RAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 9999999 899999887 9999999999999988
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.76 E-value=1.9e-16 Score=151.52 Aligned_cols=316 Identities=16% Similarity=0.158 Sum_probs=172.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCC-CCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSP-NPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKC 85 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~-~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
|||+|++.+..||+.....||++|.++||+|++++.+.... ......|++++.++-.-. ........+.......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~----~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGL----RRKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCc----CCCChHHHHHHHHHHH
Confidence 48999999999999988899999999999999998742211 111114666666652111 1112222222221111
Q ss_pred chhHHHHHHHHhhccCCCCeeEEEeCCCc--chHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCc
Q 012735 86 LVPFRDCLAKLLADVEEEPIACLISDAML--PFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQE 163 (457)
Q Consensus 86 ~~~~~~~l~~l~~~~~~~~pDlvi~D~~~--~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (457)
. .+.. +.+++++. +||+|++.... ..+..++..+++|.+.......
T Consensus 77 ~-~~~~-l~~~i~~~---~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~--------------------------- 124 (348)
T TIGR01133 77 K-AVFQ-ARRILKKF---KPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV--------------------------- 124 (348)
T ss_pred H-HHHH-HHHHHHhc---CCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC---------------------------
Confidence 1 1112 23333333 89999987543 3355578888999975311000
Q ss_pred cccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCCCC
Q 012735 164 PVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPS 243 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~ 243 (457)
.....++. .+.++.++..+...-+. + ...++|.-......
T Consensus 125 --------------------~~~~~~~~------~~~~d~ii~~~~~~~~~---------~--~~~~i~n~v~~~~~--- 164 (348)
T TIGR01133 125 --------------------PGLTNKLL------SRFAKKVLISFPGAKDH---------F--EAVLVGNPVRQEIR--- 164 (348)
T ss_pred --------------------ccHHHHHH------HHHhCeeEECchhHhhc---------C--CceEEcCCcCHHHh---
Confidence 00001111 12344444433221110 0 12334422211100
Q ss_pred CCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhh---CCCCeEEEECCCCCCCCCCCCCCchhHHHhh
Q 012735 244 SLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLAN---CKLPFLWVVRPGLTRGSDCLEPLPSGFMEMV 320 (457)
Q Consensus 244 ~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~ 320 (457)
..+.. .+++...+++++|.+..|+... ....+.+.++++. .+..+++..+++. . +.+.+..
T Consensus 165 -~~~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~---------~-~~l~~~~ 228 (348)
T TIGR01133 165 -SLPVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND---------L-EKVKNVY 228 (348)
T ss_pred -cccch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch---------H-HHHHHHH
Confidence 00000 1122222234455444455442 2222223345443 3345554443321 1 2222222
Q ss_pred cCCC--cccccc--ChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCcc---chhhHHHHHHHhhhccceecCC-C
Q 012735 321 DGRG--HLVKWA--PQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCF---TDQKVNARYVSDVWKVGLQLEN-G 392 (457)
Q Consensus 321 ~~~~--~~~~~v--pq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~---~DQ~~na~~v~~~lG~g~~l~~-~ 392 (457)
.+.. ..+.|. +..++|+.+|+ +|+++|.+++.||+++|+|+|++|.. .+|..|+..+.+ .|.|..++. +
T Consensus 229 ~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~ 305 (348)
T TIGR01133 229 QELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKE 305 (348)
T ss_pred hhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEeccc
Confidence 2111 122333 45679988888 99999988999999999999999863 578889999999 499998876 6
Q ss_pred CCHHHHHHHHHHHhcccchHHHHHHHHH
Q 012735 393 LKREEIEKTIRRVMVEKQGEEIRSRIFR 420 (457)
Q Consensus 393 ~~~~~l~~ai~~il~~~~~~~~~~~a~~ 420 (457)
.+++.|.+++.++++| ++.+++..+
T Consensus 306 ~~~~~l~~~i~~ll~~---~~~~~~~~~ 330 (348)
T TIGR01133 306 LLPEKLLEALLKLLLD---PANLEAMAE 330 (348)
T ss_pred CCHHHHHHHHHHHHcC---HHHHHHHHH
Confidence 7899999999999998 555544333
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.76 E-value=8.7e-17 Score=154.56 Aligned_cols=347 Identities=10% Similarity=-0.028 Sum_probs=190.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC--CCCeeEEecCCCCCCCCCCccCHHHHHHHHHHh
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS--HPHLTFHFIQENLSASEASTDDLVAFVSLLNTK 84 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~--~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
.||++.+.++.||+.|. +|+++|.++|++|+|++.... ..... ..++++..++ ...+.+.+..+...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~-~m~~~g~~~~~~~~~l~---------v~G~~~~l~~~~~~ 74 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGP-RMAAEGCEVLYSMEELS---------VMGLREVLGRLGRL 74 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccH-HHHhCcCccccChHHhh---------hccHHHHHHHHHHH
Confidence 47899999999999999 999999999999999987522 11110 0123333322 11122222222221
Q ss_pred cchhHHHHHHHHhhccCCCCeeEEEeCCC-cch--HHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 012735 85 CLVPFRDCLAKLLADVEEEPIACLISDAM-LPF--TQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKG 161 (457)
Q Consensus 85 ~~~~~~~~l~~l~~~~~~~~pDlvi~D~~-~~~--~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 161 (457)
...+.+.. +++++. +||+||.-.+ ... ....|+.+|||++.+.+. -.|.
T Consensus 75 -~~~~~~~~-~~l~~~---kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-~~wa---------------------- 126 (385)
T TIGR00215 75 -LKIRKEVV-QLAKQA---KPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-QVWA---------------------- 126 (385)
T ss_pred -HHHHHHHH-HHHHhc---CCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-cHhh----------------------
Confidence 11122222 233332 9999996333 223 233888999999976421 1100
Q ss_pred CccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCC
Q 012735 162 QEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPAS 241 (457)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~ 241 (457)
|+ . .. .+.+.+ .++.++. +++. +...+ .. ...+..++|....+...
T Consensus 127 ---------w~--~------~~----~r~l~~------~~d~v~~-~~~~-e~~~~---~~-~g~~~~~vGnPv~~~~~- 172 (385)
T TIGR00215 127 ---------WR--K------WR----AKKIEK------ATDFLLA-ILPF-EKAFY---QK-KNVPCRFVGHPLLDAIP- 172 (385)
T ss_pred ---------cC--c------ch----HHHHHH------HHhHhhc-cCCC-cHHHH---Hh-cCCCEEEECCchhhhcc-
Confidence 00 0 01 111111 1122122 2221 11111 11 13456678844432211
Q ss_pred CCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC-----CCCeEEEECCCCCCCCCCCCCCchhH
Q 012735 242 PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC-----KLPFLWVVRPGLTRGSDCLEPLPSGF 316 (457)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~ 316 (457)
...+...+..+-+.-.+++++|.+..||....-......+++++... +.++++...... ..+.+
T Consensus 173 --~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~---------~~~~~ 241 (385)
T TIGR00215 173 --LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK---------RRLQF 241 (385)
T ss_pred --ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch---------hHHHH
Confidence 00011111222223234567888888887752134455566555432 223444433221 11222
Q ss_pred H---HhhcCCCcccccc-ChHhhhcCCCCCCcccccChhHHHHHHhhCCccccc----Cccc---------hhhHHHHHH
Q 012735 317 M---EMVDGRGHLVKWA-PQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICM----PCFT---------DQKVNARYV 379 (457)
Q Consensus 317 ~---~~~~~~~~~~~~v-pq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~----P~~~---------DQ~~na~~v 379 (457)
. +....+..+.-+. +..++++.+|+ +|+-+|..|+ |++.+|+|+|++ |+.. +|..|+..+
T Consensus 242 ~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil 318 (385)
T TIGR00215 242 EQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNIL 318 (385)
T ss_pred HHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHh
Confidence 1 1111122222221 23468988888 9999999988 999999999999 7642 388899999
Q ss_pred HhhhccceecCC-CCCHHHHHHHHHHHhcccchH----HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012735 380 SDVWKVGLQLEN-GLKREEIEKTIRRVMVEKQGE----EIRSRIFRLKEKANHSWKQGRSSFESINSLVT 444 (457)
Q Consensus 380 ~~~lG~g~~l~~-~~~~~~l~~ai~~il~~~~~~----~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (457)
+.. ++...+.. .+|++.|.+.+.++++| + +++++.++--.++++.+.+.+.++++++.+++
T Consensus 319 ~~~-~~~pel~q~~~~~~~l~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 319 ANR-LLVPELLQEECTPHPLAIALLLLLEN---GLKAYKEMHRERQFFEELRQRIYCNADSERAAQAVLE 384 (385)
T ss_pred cCC-ccchhhcCCCCCHHHHHHHHHHHhcC---CcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 995 99999887 89999999999999999 4 44444444444444444477778888887765
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=2.4e-15 Score=145.56 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=115.5
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhC-CCCeEEEECCCCCCCCCCCCCCchhHHH---hhcCCCccccccChH-hh
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANC-KLPFLWVVRPGLTRGSDCLEPLPSGFME---MVDGRGHLVKWAPQQ-EV 335 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~~~~~vpq~-~l 335 (457)
++++|++..|+... .+.+..+++++... +.+++++.+.+. .+-+.+.+ ..++|+.+.+|+++. ++
T Consensus 201 ~~~~il~~~G~~~~--~k~~~~li~~l~~~~~~~~viv~G~~~--------~~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGV--LGNVKELCQSLMSVPDLQVVVVCGKNE--------ALKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCC--CcCHHHHHHHHhhCCCcEEEEEeCCCH--------HHHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 45678887787764 23456677777654 345555554321 01122222 123467888999864 79
Q ss_pred hcCCCCCCcccccChhHHHHHHhhCCccccc-CccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchHHH
Q 012735 336 LAHPAVGAFWTHNGWNSTLESICEGIPMICM-PCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEI 414 (457)
Q Consensus 336 L~~~~~~~~I~hgG~~s~~eal~~gvP~v~~-P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~ 414 (457)
++.+|+ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+.+. |.|+.. .+++++.++|.++++| +..
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~~ 341 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DMK 341 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HHH
Confidence 999998 99999988999999999999985 6667788999999984 998764 3689999999999998 554
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhccc
Q 012735 415 RSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLET 451 (457)
Q Consensus 415 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (457)
+++..+-+.++. ...+.++.++.+++.++....
T Consensus 342 ~~~m~~~~~~~~----~~~s~~~i~~~i~~~~~~~~~ 374 (380)
T PRK13609 342 LLQMKEAMKSLY----LPEPADHIVDDILAENHVEPN 374 (380)
T ss_pred HHHHHHHHHHhC----CCchHHHHHHHHHHhhhhhhh
Confidence 443333222232 445678888888777766554
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=1.2e-14 Score=140.78 Aligned_cols=347 Identities=11% Similarity=0.061 Sum_probs=172.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC--CCCeeEEecCCCCCCCCCCccCHHHHHHHHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS--HPHLTFHFIQENLSASEASTDDLVAFVSLLNT 83 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~--~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
+|||+|+..+..||++|.. ++++|.++++++.+++.... ..... ..++.++.++ .....+.+..+..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~---------~~g~~~~~~~~~~ 69 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGGP-RMQAAGCESLFDMEELA---------VMGLVEVLPRLPR 69 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEccH-HHHhCCCccccCHHHhh---------hccHHHHHHHHHH
Confidence 3689999999999999999 99999999888888775321 11110 0122222222 1112222222211
Q ss_pred hcchhHHHHHHHHhhccCCCCeeEEEeCCC-cchH--HHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCC
Q 012735 84 KCLVPFRDCLAKLLADVEEEPIACLISDAM-LPFT--QAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSK 160 (457)
Q Consensus 84 ~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~-~~~~--~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 160 (457)
.... +. .+.++++.. +||+|+.-.+ ..+. ...|...|||++.+.... .+
T Consensus 70 ~~~~-~~-~~~~~l~~~---kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~-~~---------------------- 121 (380)
T PRK00025 70 LLKI-RR-RLKRRLLAE---PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPS-VW---------------------- 121 (380)
T ss_pred HHHH-HH-HHHHHHHHc---CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCc-hh----------------------
Confidence 1111 11 233344433 9999876322 2233 334677899988753210 00
Q ss_pred CCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCC
Q 012735 161 GQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPA 240 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~ 240 (457)
. .......+. ...++.++..+....+. +.. ...++.++|....+...
T Consensus 122 -----------~---------~~~~~~~~~-------~~~~d~i~~~~~~~~~~-----~~~-~g~~~~~~G~p~~~~~~ 168 (380)
T PRK00025 122 -----------A---------WRQGRAFKI-------AKATDHVLALFPFEAAF-----YDK-LGVPVTFVGHPLADAIP 168 (380)
T ss_pred -----------h---------cCchHHHHH-------HHHHhhheeCCccCHHH-----HHh-cCCCeEEECcCHHHhcc
Confidence 0 000000111 12233334433222111 111 12346667733322110
Q ss_pred CCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC-----CCCeEEEECCCCCCCCCCCCCCchh
Q 012735 241 SPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC-----KLPFLWVVRPGLTRGSDCLEPLPSG 315 (457)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~ 315 (457)
..+....+.+.+.-.+++++|++..||...........++++++.. +..++++.+.+. .-+.
T Consensus 169 ----~~~~~~~~~~~l~~~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~---------~~~~ 235 (380)
T PRK00025 169 ----LLPDRAAARARLGLDPDARVLALLPGSRGQEIKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPK---------RREQ 235 (380)
T ss_pred ----cccChHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCChh---------hHHH
Confidence 0011111222233223446677767765542123344455555432 234555433121 1122
Q ss_pred HHHhhcC----CCccccccC-hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccch--------hhHH-----HH
Q 012735 316 FMEMVDG----RGHLVKWAP-QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTD--------QKVN-----AR 377 (457)
Q Consensus 316 ~~~~~~~----~~~~~~~vp-q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~D--------Q~~n-----a~ 377 (457)
+.+.... ++.+. -+ -..+++.+|+ +|+.+|.+++ |++.+|+|+|++|...- |..| +.
T Consensus 236 ~~~~~~~~~~~~v~~~--~~~~~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (380)
T PRK00025 236 IEEALAEYAGLEVTLL--DGQKREAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPN 310 (380)
T ss_pred HHHHHhhcCCCCeEEE--cccHHHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHH
Confidence 3222221 22222 12 3568888888 9999999888 99999999999954321 2222 23
Q ss_pred HHHhhhccceecCC-CCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 378 YVSDVWKVGLQLEN-GLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 378 ~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.+.+. +++..+.. ..+++.|.+++.++++|.+ +++++++++++.+.+ ..+...+.++.+.+.+.+
T Consensus 311 ~~~~~-~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~~~ 377 (380)
T PRK00025 311 LLAGR-ELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELLKQ 377 (380)
T ss_pred HhcCC-CcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhhh
Confidence 33432 44444444 6799999999999999932 233444444443333 345566677776665543
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.60 E-value=1.6e-14 Score=132.52 Aligned_cols=103 Identities=17% Similarity=0.233 Sum_probs=77.1
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhC--CCCeEEEECCCCCCCCCCCCCCchhHHHhh--cCCCccccccChH-hhhc
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANC--KLPFLWVVRPGLTRGSDCLEPLPSGFMEMV--DGRGHLVKWAPQQ-EVLA 337 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vpq~-~lL~ 337 (457)
+.|++++|.... ......+++++... +..+.++++... ...+.+.+.. ..|+.+..++++. ++|+
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~ 240 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--------PNLDELKKFAKEYPNIILFIDVENMAELMN 240 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--------cCHHHHHHHHHhCCCEEEEeCHHHHHHHHH
Confidence 568999996664 33555677777654 346667666532 1223333222 3577888999976 7998
Q ss_pred CCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHH
Q 012735 338 HPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARY 378 (457)
Q Consensus 338 ~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~ 378 (457)
.+++ +|++|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 241 ~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 241 EADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 8888 999999 9999999999999999999999999975
No 40
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.55 E-value=3.9e-12 Score=123.15 Aligned_cols=165 Identities=16% Similarity=0.165 Sum_probs=111.7
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhC--CCCeEEEECCCCCCCCCCCCCCchhHHHhh--cCCCccccccChH-h
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANC--KLPFLWVVRPGLTRGSDCLEPLPSGFMEMV--DGRGHLVKWAPQQ-E 334 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vpq~-~ 334 (457)
+++++|++..|+.+. .+.+..+++++.+. +.+++++.+.+. .+-+.+.+.. .+++.+.+|+++. +
T Consensus 200 ~~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~ 269 (391)
T PRK13608 200 PDKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNE 269 (391)
T ss_pred CCCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHH
Confidence 345788888888873 24455556554322 345555544321 1112232222 2466777998754 6
Q ss_pred hhcCCCCCCcccccChhHHHHHHhhCCccccc-CccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccc-hH
Q 012735 335 VLAHPAVGAFWTHNGWNSTLESICEGIPMICM-PCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQ-GE 412 (457)
Q Consensus 335 lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~-P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~-~~ 412 (457)
+++.+|+ +|+.+|..|+.||+++|+|+|++ |..+.|..|+..+.+. |+|+... +++++.++|.++++|.+ ..
T Consensus 270 ~~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~~~~~~ 343 (391)
T PRK13608 270 WMASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNGNEQLT 343 (391)
T ss_pred HHHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcCHHHHH
Confidence 9989999 99998888999999999999998 6667778999999995 9998753 78899999999999821 22
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 413 EIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 413 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.+++++++++ ...+.++.++.+++.+..
T Consensus 344 ~m~~~~~~~~--------~~~s~~~i~~~l~~l~~~ 371 (391)
T PRK13608 344 NMISTMEQDK--------IKYATQTICRDLLDLIGH 371 (391)
T ss_pred HHHHHHHHhc--------CCCCHHHHHHHHHHHhhh
Confidence 3333333322 345677777777777654
No 41
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.51 E-value=5.5e-16 Score=131.50 Aligned_cols=135 Identities=21% Similarity=0.261 Sum_probs=94.7
Q ss_pred EEEEEecccccCC-HHHHHHHHHHHhhC--CCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccC-hHhhhcCC
Q 012735 264 VIYVSFGSIAAVS-EAEFLEIAWGLANC--KLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAP-QQEVLAHP 339 (457)
Q Consensus 264 vv~vs~Gs~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-q~~lL~~~ 339 (457)
+|+|+.||.+... ...+..+.+.+... ..+++++++.... ......+ +....|+.+.+|++ ..++++.+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~------~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNNY------EELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCEC------HHHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCcH------HHHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 4899999887510 11122233333322 4677777765421 1111111 11125667889999 67899999
Q ss_pred CCCCcccccChhHHHHHHhhCCcccccCccc----hhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhcc
Q 012735 340 AVGAFWTHNGWNSTLESICEGIPMICMPCFT----DQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMVE 408 (457)
Q Consensus 340 ~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~----DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~ 408 (457)
|+ +|||||.||++|++++|+|+|++|... +|..||..+++. |.|..+.. ..+.+.|.++|..++.+
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 98 999999999999999999999999988 999999999995 99999987 77899999999999998
No 42
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.50 E-value=1.5e-11 Score=118.56 Aligned_cols=352 Identities=12% Similarity=0.040 Sum_probs=191.3
Q ss_pred CCCccCHHHHHHHHHHHHH--CCCeEE---EEeCCCCC--CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHH-hc
Q 012735 14 LPLQGHISPMLQLANILHS--QGFTIT---IIHTSFNS--PNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNT-KC 85 (457)
Q Consensus 14 ~~~~gH~~p~l~la~~L~~--~Gh~Vt---~~~~~~~~--~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (457)
+.++|-=.-.++||++|.+ .|++|. +++..... ..... .| .+..+| .+-.........+..... ..
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~-~g-~~~~~~----sgg~~~~~~~~~~~~~~~gl~ 77 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI-IG-PTKELP----SGGFSYQSLRGLLRDLRAGLV 77 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce-eC-CCCCCC----CCCccCCCHHHHHHHHHhhHH
Confidence 4567777889999999998 599999 98886211 11111 22 333333 222223344455555444 33
Q ss_pred chhHHH--HHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCc
Q 012735 86 LVPFRD--CLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQE 163 (457)
Q Consensus 86 ~~~~~~--~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 163 (457)
...++. .+.++.+ +||+||+-.-+. ...+|...|+|++.+.+.-.-... .. .+.. ....++.
T Consensus 78 ~~~~~~~~~~~~~~~-----~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn~~~-----~~--~~~~---~~~~~~~ 141 (396)
T TIGR03492 78 GLTLGQWRALRKWAK-----KGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSDYYW-----ES--GPRR---SPSDEYH 141 (396)
T ss_pred HHHHHHHHHHHHHhh-----cCCEEEEECcHH-HHHHHHHcCCCceEEEeeccceee-----cC--CCCC---ccchhhh
Confidence 333332 3444422 889998765445 888999999999996543100000 00 0000 0011111
Q ss_pred cccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCCCC
Q 012735 164 PVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPS 243 (457)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~ 243 (457)
+.++.. ...+ + +..-..+.++.++.....+- .. +++ ...++.++|-...+.-.
T Consensus 142 ~~~G~~--------------~~p~-e---~n~l~~~~a~~v~~~~~~t~--~~---l~~-~g~k~~~vGnPv~d~l~--- 194 (396)
T TIGR03492 142 RLEGSL--------------YLPW-E---RWLMRSRRCLAVFVRDRLTA--RD---LRR-QGVRASYLGNPMMDGLE--- 194 (396)
T ss_pred ccCCCc--------------cCHH-H---HHHhhchhhCEEeCCCHHHH--HH---HHH-CCCeEEEeCcCHHhcCc---
Confidence 112111 0111 1 11111244555555442211 11 122 13568999955544321
Q ss_pred CCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC----CCCeEEEECCCCCCCCCCCCCCchhHHHh
Q 012735 244 SLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC----KLPFLWVVRPGLTRGSDCLEPLPSGFMEM 319 (457)
Q Consensus 244 ~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~ 319 (457)
.... .-+ .+++++|.+--||....-...+..++++++.+ +..+++.+.+.. ..+.+.+.
T Consensus 195 ---~~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~---------~~~~~~~~ 257 (396)
T TIGR03492 195 ---PPER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL---------SLEKLQAI 257 (396)
T ss_pred ---cccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC---------CHHHHHHH
Confidence 0010 011 22346788888988652233344556665543 456777764321 01112111
Q ss_pred hc-------------------CCCccccccC-hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHH
Q 012735 320 VD-------------------GRGHLVKWAP-QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYV 379 (457)
Q Consensus 320 ~~-------------------~~~~~~~~vp-q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v 379 (457)
.. .++.+..+.. -.++++.+++ +|+-+|..| .|++..|+|+|++|.-..|. |+...
T Consensus 258 l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~ 333 (396)
T TIGR03492 258 LEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFA 333 (396)
T ss_pred HHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHH
Confidence 11 1123334443 3568988998 999999777 99999999999999877786 88766
Q ss_pred Hhhh----ccceecCCCCCHHHHHHHHHHHhcccchHHHHHHHH-HHHHHHHHHHhcCCChHHHHHHHHH
Q 012735 380 SDVW----KVGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIF-RLKEKANHSWKQGRSSFESINSLVT 444 (457)
Q Consensus 380 ~~~l----G~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~-~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (457)
++ . |.++.+.. .+.+.|.+++.++++| ++.+++.. ..+..+. +.+.+++.++.+.+
T Consensus 334 ~~-~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg----~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 334 EA-QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCRRNGQERMG----PPGASARIAESILK 394 (396)
T ss_pred Hh-hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcC----CCCHHHHHHHHHHH
Confidence 65 3 66666654 5669999999999998 55554433 3333333 55556666655544
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.48 E-value=1.1e-11 Score=119.90 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=69.4
Q ss_pred CCCccccccChH-hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhh-HHHHHHHhhhccceecCCCCCHHHHH
Q 012735 322 GRGHLVKWAPQQ-EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQK-VNARYVSDVWKVGLQLENGLKREEIE 399 (457)
Q Consensus 322 ~~~~~~~~vpq~-~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~-~na~~v~~~lG~g~~l~~~~~~~~l~ 399 (457)
.++.+.+|+++. ++++.+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|+.. -+++.|.
T Consensus 265 ~~v~~~G~~~~~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la 338 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIA 338 (382)
T ss_pred CCeEEEeccccHHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHH
Confidence 356777999854 69988888 999999999999999999999998776665 789989985 999765 4889999
Q ss_pred HHHHHHhcc
Q 012735 400 KTIRRVMVE 408 (457)
Q Consensus 400 ~ai~~il~~ 408 (457)
++|.+++.|
T Consensus 339 ~~i~~ll~~ 347 (382)
T PLN02605 339 RIVAEWFGD 347 (382)
T ss_pred HHHHHHHcC
Confidence 999999986
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.46 E-value=1.9e-10 Score=110.36 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=79.5
Q ss_pred cCCCccccccChHh---hhcCCCCCCcccccC----hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 321 DGRGHLVKWAPQQE---VLAHPAVGAFWTHNG----WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 321 ~~~~~~~~~vpq~~---lL~~~~~~~~I~hgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
..|+.+.+|+|+.+ +++.+++ +|+.++ .+++.||+++|+|+|+.+.. .+...++.. +.|...+. .
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~-~ 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP-G 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC-C
Confidence 45668889999765 7888887 886654 47899999999999988765 356667774 88888766 5
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
+.+++.+++.+++.| +..+++..+-+.+.. +..+.++.++.+++.+
T Consensus 318 ~~~~l~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 DAEAFAAALAALLAD---PELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred CHHHHHHHHHHHHcC---HHHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 788899999999998 444433333222222 3355777777777654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.44 E-value=3e-10 Score=112.83 Aligned_cols=154 Identities=14% Similarity=0.104 Sum_probs=96.9
Q ss_pred EEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhh-cCCCccccccChHh---hhcCC
Q 012735 264 VIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMV-DGRGHLVKWAPQQE---VLAHP 339 (457)
Q Consensus 264 vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~~~~~vpq~~---lL~~~ 339 (457)
.+++..|+.. ..+....++++++..+.-.++.++.+. ..+.+.+.. ..|+.+.+++|+.+ +++.+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~a 332 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYASG 332 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHHHC
Confidence 4555668776 456677788888776422333444332 123333222 24667789998544 78888
Q ss_pred CCCCcccccC----hhHHHHHHhhCCcccccCccchhhHHHHHHHh---hhccceecCCCCCHHHHHHHHHHHhcccc-h
Q 012735 340 AVGAFWTHNG----WNSTLESICEGIPMICMPCFTDQKVNARYVSD---VWKVGLQLENGLKREEIEKTIRRVMVEKQ-G 411 (457)
Q Consensus 340 ~~~~~I~hgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~---~lG~g~~l~~~~~~~~l~~ai~~il~~~~-~ 411 (457)
|+ +|.-.. ..++.||+.+|+|+|+.... ...+.+.+ . +.|...+. -+++++.++|.++++|.+ .
T Consensus 333 Dv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~~~~~ 404 (465)
T PLN02871 333 DV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLADPELR 404 (465)
T ss_pred CE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhCHHHH
Confidence 88 774432 35799999999999987653 23344444 4 67877765 478999999999999832 2
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012735 412 EEIRSRIFRLKEKANHSWKQGRSSFESINSLVT 444 (457)
Q Consensus 412 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (457)
..+.+++++..++ .+.+..++++++
T Consensus 405 ~~~~~~a~~~~~~--------fsw~~~a~~l~~ 429 (465)
T PLN02871 405 ERMGAAAREEVEK--------WDWRAATRKLRN 429 (465)
T ss_pred HHHHHHHHHHHHh--------CCHHHHHHHHHH
Confidence 3444455443332 446777777665
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=1.1e-10 Score=101.44 Aligned_cols=146 Identities=15% Similarity=0.137 Sum_probs=107.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhc--CCCccccccC-hHhhhcCC
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD--GRGHLVKWAP-QQEVLAHP 339 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~vp-q~~lL~~~ 339 (457)
.-|+||+|..- +....-+++..+.+.++.+-++++.. ....++..++.. +|+.+..... ...|+..+
T Consensus 159 r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~ 228 (318)
T COG3980 159 RDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKEA 228 (318)
T ss_pred heEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHhc
Confidence 34999998765 44566678888888776666666532 223344444443 4555554444 34589888
Q ss_pred CCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchHHHHHHHH
Q 012735 340 AVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIF 419 (457)
Q Consensus 340 ~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~ 419 (457)
++ .|+.||+ |+.|++.-|+|.+++|+...|.--|...++ +|+-..+...++++....-+.++.+| ...|++.-
T Consensus 229 d~--aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l~ 301 (318)
T COG3980 229 DL--AISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNLS 301 (318)
T ss_pred ch--heeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhhh
Confidence 88 9998887 899999999999999999999999999999 69988887667888888888899988 66666655
Q ss_pred HHHHHH
Q 012735 420 RLKEKA 425 (457)
Q Consensus 420 ~l~~~~ 425 (457)
.-.+.+
T Consensus 302 ~~~~~i 307 (318)
T COG3980 302 FGSKLI 307 (318)
T ss_pred hcccee
Confidence 444433
No 47
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.32 E-value=6.3e-14 Score=115.06 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=76.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHH-----
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNT----- 83 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----- 83 (457)
|+|++.|+.||++|+++||++|++|||+|++++++....... ..|++|++++.. ............+....+
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~-~~Gl~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 77 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE-AAGLEFVPIPGD--SRLPRSLEPLANLRRLARLIRGL 77 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH-HTT-EEEESSSC--GGGGHHHHHHHHHHCHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc-ccCceEEEecCC--cCcCcccchhhhhhhHHHHhhhh
Confidence 789999999999999999999999999999999874333332 379999999865 000000001111111111
Q ss_pred -hcchhHHHHHHHHh-hccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchH
Q 012735 84 -KCLVPFRDCLAKLL-ADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGA 136 (457)
Q Consensus 84 -~~~~~~~~~l~~l~-~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~ 136 (457)
.+...+.+...+.. ........|+++.+.....+..+|++++||++.....+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~ 132 (139)
T PF03033_consen 78 EEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPW 132 (139)
T ss_dssp HHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGG
T ss_pred hHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCc
Confidence 11111111111111 111122678888888778899999999999999877754
No 48
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.32 E-value=5.7e-09 Score=101.67 Aligned_cols=79 Identities=15% Similarity=0.175 Sum_probs=59.6
Q ss_pred CCCccccccChHh---hhcCCCCCCccc---ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCC
Q 012735 322 GRGHLVKWAPQQE---VLAHPAVGAFWT---HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLK 394 (457)
Q Consensus 322 ~~~~~~~~vpq~~---lL~~~~~~~~I~---hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 394 (457)
+++.+.+++|+.+ +|..+++ +|. +.| ..++.|||++|+|+|+... ......+... ..|...+. .+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~~----~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSDT----APVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcCC----CCchhhcccC-CceEEcCC-CC
Confidence 5678889999764 6777887 553 223 3489999999999998644 4556666663 56777765 57
Q ss_pred HHHHHHHHHHHhcc
Q 012735 395 REEIEKTIRRVMVE 408 (457)
Q Consensus 395 ~~~l~~ai~~il~~ 408 (457)
+++++++|.++++|
T Consensus 353 ~~~la~~i~~ll~~ 366 (396)
T cd03818 353 PDALAAAVIELLDD 366 (396)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999998
No 49
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.30 E-value=1.8e-09 Score=103.21 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=81.7
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhC---CCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHh---
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQE--- 334 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~--- 334 (457)
+++.+++..|+... .+....++++++.. +.++ +.++..... ...........++.+.+++|+.+
T Consensus 189 ~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~l-~i~G~~~~~-------~~~~~~~~~~~~v~~~g~~~~~~~~~ 258 (359)
T cd03823 189 GGRLRFGFIGQLTP--HKGVDLLLEAFKRLPRGDIEL-VIVGNGLEL-------EEESYELEGDPRVEFLGAYPQEEIDD 258 (359)
T ss_pred CCceEEEEEecCcc--ccCHHHHHHHHHHHHhcCcEE-EEEcCchhh-------hHHHHhhcCCCeEEEeCCCCHHHHHH
Confidence 34566777787764 33344555555543 3333 333332100 00000001235667889998654
Q ss_pred hhcCCCCCCccc----ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 335 VLAHPAVGAFWT----HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 335 lL~~~~~~~~I~----hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+++.+++ +|+ ..| ..++.||+++|+|+|+.+.. .....+.+. +.|...+. -+.+++.+++.++++|
T Consensus 259 ~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 259 FYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDG-VNGLLFPP-GDAEDLAAALERLIDD 329 (359)
T ss_pred HHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCC-CcEEEECC-CCHHHHHHHHHHHHhC
Confidence 6888887 663 233 45899999999999986653 456677763 67887766 4689999999999998
No 50
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.27 E-value=2.3e-09 Score=104.74 Aligned_cols=343 Identities=14% Similarity=0.144 Sum_probs=174.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCC--CCCCCeeEEecCCCCCCCCCCccCHHHHHHHHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNP--SSHPHLTFHFIQENLSASEASTDDLVAFVSLLN 82 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~--~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
+++||.+++....|+-..+..+|++|+++||+|++++........ ....|+.++.++..-. ........+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~ 77 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQ----RLNKLPFLLFAPL 77 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCcc----ccccchHHHHHHH
Confidence 567888888887888899999999999999999999975222111 2235777777753210 0111112222111
Q ss_pred HhcchhHHHHHHHHhhccCCCCeeEEEeCCCc-----chHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCC
Q 012735 83 TKCLVPFRDCLAKLLADVEEEPIACLISDAML-----PFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQ 157 (457)
Q Consensus 83 ~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~-----~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 157 (457)
..... +..++..+.+.. +||+|++.... ..+..++...++|+|.......... . . ...
T Consensus 78 ~~~~~-~~~~~~~l~~~~---~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~--~-~------~~~---- 140 (415)
T cd03816 78 KVLWQ-FFSLLWLLYKLR---PADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI--L-A------LKL---- 140 (415)
T ss_pred HHHHH-HHHHHHHHHhcC---CCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH--H-h------ccc----
Confidence 11111 112222233322 89999974321 1244456678999987544321110 0 0 000
Q ss_pred CCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhc-cccccEEEEcCchhhhHHHHHHHHhhcCCC--ccccCcc
Q 012735 158 DSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDG-AKVSSGIIWNTFEDLEESALATLRQQFSIP--IFPIGPF 234 (457)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~~~~~~~p--~~~vGp~ 234 (457)
................ .+.++.++..+...-+.- .. ..- ...+ +++-|+.
T Consensus 141 ------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l-~~-~~~-~~~ki~vI~Ng~~ 193 (415)
T cd03816 141 ------------------------GENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDL-QQ-FNN-WKIRATVLYDRPP 193 (415)
T ss_pred ------------------------CCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHH-Hh-hhc-cCCCeeecCCCCH
Confidence 0001111121212111 345677666665432221 11 000 0122 2333321
Q ss_pred ccCCCCCCCCCccCcccccccc----------------CCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCC-------
Q 012735 235 HICIPASPSSLLTQDQSCIAWL----------------DKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCK------- 291 (457)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l----------------~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~------- 291 (457)
..-.+ .+....-..+. ...+++..++++.|.... .+.+..+++|++.+.
T Consensus 194 ~~f~p------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~~~~~~~ 265 (415)
T cd03816 194 EQFRP------LPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEKSAATGP 265 (415)
T ss_pred HHcee------CcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHHhhcccc
Confidence 10000 00000000010 011234456666777663 344555566655421
Q ss_pred --CCeEE-EECCCCCCCCCCCCCCchhHHHhhc----CCCccc-cccChHh---hhcCCCCCCccc-c------cChhHH
Q 012735 292 --LPFLW-VVRPGLTRGSDCLEPLPSGFMEMVD----GRGHLV-KWAPQQE---VLAHPAVGAFWT-H------NGWNST 353 (457)
Q Consensus 292 --~~~i~-~~~~~~~~~~~~~~~lp~~~~~~~~----~~~~~~-~~vpq~~---lL~~~~~~~~I~-h------gG~~s~ 353 (457)
.++.+ .++.+. .-+.+.+... +|+.+. +|+|..+ +|+.+++ +|. + |--+++
T Consensus 266 ~~~~i~l~ivG~G~---------~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~~~p~~~ 334 (415)
T cd03816 266 KLPKLLCIITGKGP---------LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGLDLPMKV 334 (415)
T ss_pred cCCCEEEEEEecCc---------cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEccccccccCCcHHH
Confidence 12433 334332 1122222222 344443 6888554 6888888 662 1 124579
Q ss_pred HHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc---cc-hHHHHHHHHHHH
Q 012735 354 LESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE---KQ-GEEIRSRIFRLK 422 (457)
Q Consensus 354 ~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~---~~-~~~~~~~a~~l~ 422 (457)
.||+.+|+|+|+... ....+.+++. +.|...+ ++++++++|..+++| .+ ...+++++++..
T Consensus 335 ~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 335 VDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999999998654 3455677774 7788773 799999999999988 33 566777766655
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.25 E-value=1.9e-08 Score=98.62 Aligned_cols=163 Identities=11% Similarity=0.114 Sum_probs=97.0
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhCC--CCeEE-EECCCCCCCCCCCCCCchhHHHhh----cCCCccccccChHh-
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANCK--LPFLW-VVRPGLTRGSDCLEPLPSGFMEMV----DGRGHLVKWAPQQE- 334 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~-~~~~~~~~~~~~~~~lp~~~~~~~----~~~~~~~~~vpq~~- 334 (457)
+.+++..|+.. +.+.+..++++++... .++-+ .++.+. ..+.+.+.. -+|+.+.+|+|+.+
T Consensus 229 ~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~ivG~g~---------~~~~l~~~~~~~~l~~v~f~G~~~~~~~ 297 (412)
T PRK10307 229 KKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFVICGQGG---------GKARLEKMAQCRGLPNVHFLPLQPYDRL 297 (412)
T ss_pred CEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEEEECCCh---------hHHHHHHHHHHcCCCceEEeCCCCHHHH
Confidence 45666678876 4455666677766442 22333 344331 122222211 14678889998654
Q ss_pred --hhcCCCCCCcccccCh------hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 335 --VLAHPAVGAFWTHNGW------NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 335 --lL~~~~~~~~I~hgG~------~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
+++.+|+..+.+..+. +.+.|++.+|+|+|+....+.. ..+.+. +.|+..+. -+.++++++|.+++
T Consensus 298 ~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~l~ 371 (412)
T PRK10307 298 PALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAALA 371 (412)
T ss_pred HHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHHHH
Confidence 7888887433333221 3478999999999998754311 112222 45666655 57899999999999
Q ss_pred cccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 407 VEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 407 ~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+|.+ ...+++++++..+ +..+.+..++.+++.+++.
T Consensus 372 ~~~~~~~~~~~~a~~~~~-------~~fs~~~~~~~~~~~~~~~ 408 (412)
T PRK10307 372 RQALLRPKLGTVAREYAE-------RTLDKENVLRQFIADIRGL 408 (412)
T ss_pred hCHHHHHHHHHHHHHHHH-------HHcCHHHHHHHHHHHHHHH
Confidence 8832 3344455444332 3455788888888777653
No 52
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.25 E-value=9e-09 Score=99.32 Aligned_cols=112 Identities=11% Similarity=0.074 Sum_probs=76.5
Q ss_pred CCCccccccCh-HhhhcCCCCCCccc----ccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHH
Q 012735 322 GRGHLVKWAPQ-QEVLAHPAVGAFWT----HNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKRE 396 (457)
Q Consensus 322 ~~~~~~~~vpq-~~lL~~~~~~~~I~----hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 396 (457)
+++.+.++.++ ..++..+++ +|. -|...++.||+.+|+|+|+... ......+.+. ..|...+. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-CCHH
Confidence 45666777764 458877777 662 2345699999999999998644 3456667663 57776665 5789
Q ss_pred HHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 397 EIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 397 ~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
++.+++..++++.+ ..++++++++.. . +..+.+..++.+++.+++
T Consensus 325 ~l~~~i~~l~~~~~~~~~~~~~~~~~~---~----~~fs~~~~~~~~~~~y~~ 370 (371)
T cd04962 325 AMAEYALSLLEDDELWQEFSRAARNRA---A----ERFDSERIVPQYEALYRR 370 (371)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHH---H----HhCCHHHHHHHHHHHHHh
Confidence 99999999998822 233444444431 1 345578888888887764
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.24 E-value=3.9e-09 Score=102.00 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=58.3
Q ss_pred CCCccccccChHh---hhcCCCCCCcccccC---------hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceec
Q 012735 322 GRGHLVKWAPQQE---VLAHPAVGAFWTHNG---------WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQL 389 (457)
Q Consensus 322 ~~~~~~~~vpq~~---lL~~~~~~~~I~hgG---------~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l 389 (457)
+|+.+.+++|+.+ ++..+++ +|.... .+++.||+.+|+|+|+.+..+.+ ..+.. .+.|...
T Consensus 275 ~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~----~~~~~-~~~g~~~ 347 (394)
T cd03794 275 DNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESA----ELVEE-AGAGLVV 347 (394)
T ss_pred CcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEEEecCCCch----hhhcc-CCcceEe
Confidence 5678888998654 6777887 664322 34579999999999998876543 33444 2667666
Q ss_pred CCCCCHHHHHHHHHHHhcc
Q 012735 390 ENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 390 ~~~~~~~~l~~ai~~il~~ 408 (457)
+. -+.++++++|.+++.|
T Consensus 348 ~~-~~~~~l~~~i~~~~~~ 365 (394)
T cd03794 348 PP-GDPEALAAAILELLDD 365 (394)
T ss_pred CC-CCHHHHHHHHHHHHhC
Confidence 65 4889999999999988
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.22 E-value=1.2e-08 Score=99.39 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=61.5
Q ss_pred CCCccccccChHh---hhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCC
Q 012735 322 GRGHLVKWAPQQE---VLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLK 394 (457)
Q Consensus 322 ~~~~~~~~vpq~~---lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 394 (457)
+|+.+.+|+|+.+ +++.+++ +++. |-..++.||+.+|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-~~ 354 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-RD 354 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC-CC
Confidence 5678889999765 5878887 7744 2236899999999999887654 355667773 78888766 47
Q ss_pred HHHHHHHHHHHhcc
Q 012735 395 REEIEKTIRRVMVE 408 (457)
Q Consensus 395 ~~~l~~ai~~il~~ 408 (457)
+++++++|.+++++
T Consensus 355 ~~~l~~~i~~l~~~ 368 (398)
T cd03800 355 PEALAAALRRLLTD 368 (398)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999988
No 55
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.22 E-value=2.3e-08 Score=96.00 Aligned_cols=95 Identities=15% Similarity=0.234 Sum_probs=66.9
Q ss_pred cCCCccccccChHh---hhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 321 DGRGHLVKWAPQQE---VLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 321 ~~~~~~~~~vpq~~---lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
.+|+.+.+++|+.+ ++..+++ +|.. |+..++.||+.+|+|+|+... ...+..+.+. +.|..++. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C
Confidence 35678889999754 6878888 6633 335789999999999998654 3456777774 78888876 2
Q ss_pred CHHHHHHHHHHHhcccc-hHHHHHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEK 424 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~ 424 (457)
+. ++.+++.+++++.+ ...+++++++..+.
T Consensus 330 ~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 360 (374)
T cd03817 330 DE-ALAEALLRLLQDPELRRRLSKNAEESAEK 360 (374)
T ss_pred CH-HHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 22 89999999999832 23355555544444
No 56
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.21 E-value=1.9e-08 Score=96.17 Aligned_cols=111 Identities=19% Similarity=0.222 Sum_probs=78.2
Q ss_pred cCCCccccccChH---hhhcCCCCCCccc----ccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 321 DGRGHLVKWAPQQ---EVLAHPAVGAFWT----HNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 321 ~~~~~~~~~vpq~---~lL~~~~~~~~I~----hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
.+++.+.+++++. .++..+++ +|. -|..+++.||+.+|+|+|+.+. ......+.+. +.|...+. .
T Consensus 255 ~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~ 326 (374)
T cd03801 255 GDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGLLVPP-G 326 (374)
T ss_pred CcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceEEeCC-C
Confidence 4667888999754 47878887 663 3556799999999999998776 3566677764 78887766 4
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRI-FRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
+++++.+++.++++| +..++.. +...+.+. +..+.++.++.+++.+
T Consensus 327 ~~~~l~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 327 DPEALAEAILRLLDD---PELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred CHHHHHHHHHHHHcC---hHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 699999999999998 4433222 22222232 4556788888777665
No 57
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.21 E-value=3.8e-08 Score=93.81 Aligned_cols=312 Identities=13% Similarity=0.091 Sum_probs=160.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcch
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLV 87 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
||++++....|+......++++|.++||+|++++............+++++.++.... .......+...
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~------ 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRR-----GINPFKDLKAL------ 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEecccccc-----ccChHhHHHHH------
Confidence 5777777777899999999999999999999999863332112225677776653211 01111111111
Q ss_pred hHHHHHHHHhhccCCCCeeEEEeCCCcc--hHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCccc
Q 012735 88 PFRDCLAKLLADVEEEPIACLISDAMLP--FTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPV 165 (457)
Q Consensus 88 ~~~~~l~~l~~~~~~~~pDlvi~D~~~~--~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 165 (457)
.. +.+.++.. +||+|++..... .+..++...+.|.+...........
T Consensus 70 --~~-~~~~~~~~---~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------------------- 118 (359)
T cd03808 70 --LR-LYRLLRKE---RPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFVF------------------------- 118 (359)
T ss_pred --HH-HHHHHHhc---CCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchhh-------------------------
Confidence 11 12222222 899999875432 3444555466666554332111000
Q ss_pred cCCCCCCCCCCCCCCCCCChhHHHHHHhhh-hccccccEEEEcCchhhhHHHHHHHHhhcC---CCccccCccccCCCCC
Q 012735 166 VELPPLKIKDLPVINTRDPETLYEIVNGMV-DGAKVSSGIIWNTFEDLEESALATLRQQFS---IPIFPIGPFHICIPAS 241 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~le~~~~~~~~~~~~---~p~~~vGp~~~~~~~~ 241 (457)
.........+.... .....++.++..+....+.- ..... .....+.|...+...
T Consensus 119 ----------------~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~- 176 (359)
T cd03808 119 ----------------TSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLA-----LKLGIIKKKKTVLIPGSGVDLDR- 176 (359)
T ss_pred ----------------ccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHH-----HHhcCCCcCceEEecCCCCChhh-
Confidence 00000111111111 12345577777665443321 22111 122222222211110
Q ss_pred CCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC---CCCe-EEEECCCCCCCCCCCCCCchh-H
Q 012735 242 PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPF-LWVVRPGLTRGSDCLEPLPSG-F 316 (457)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~-i~~~~~~~~~~~~~~~~lp~~-~ 316 (457)
..+.. .. ..+++.+++..|+... .+....++++++.. +..+ ++.++... .. ...... +
T Consensus 177 ---~~~~~----~~---~~~~~~~i~~~G~~~~--~k~~~~li~~~~~l~~~~~~~~l~i~G~~~-~~----~~~~~~~~ 239 (359)
T cd03808 177 ---FSPSP----EP---IPEDDPVFLFVARLLK--DKGIDELLEAARILKAKGPNVRLLLVGDGD-EE----NPAAILEI 239 (359)
T ss_pred ---cCccc----cc---cCCCCcEEEEEecccc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCC-cc----hhhHHHHH
Confidence 00000 00 1234567888888764 23344444444432 3333 33333322 10 000000 1
Q ss_pred HH-hhcCCCccccccCh-HhhhcCCCCCCcccccC----hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecC
Q 012735 317 ME-MVDGRGHLVKWAPQ-QEVLAHPAVGAFWTHNG----WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLE 390 (457)
Q Consensus 317 ~~-~~~~~~~~~~~vpq-~~lL~~~~~~~~I~hgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~ 390 (457)
.+ ....++.+.++..+ ..+++.+++ +|.-+. .+++.||+.+|+|+|+.+.. .....+.+. +.|...+
T Consensus 240 ~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g~~~~ 312 (359)
T cd03808 240 EKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNGFLVP 312 (359)
T ss_pred HhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cceEEEC
Confidence 11 11245566666443 458888887 775433 57999999999999986544 345666663 7787776
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 012735 391 NGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 391 ~~~~~~~l~~ai~~il~~ 408 (457)
. -+++++.+++.+++.|
T Consensus 313 ~-~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 313 P-GDAEALADAIERLIED 329 (359)
T ss_pred C-CCHHHHHHHHHHHHhC
Confidence 5 4799999999999988
No 58
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.13 E-value=8.5e-09 Score=101.40 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=69.2
Q ss_pred HhhhcCCCCCCcccc-----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 333 QEVLAHPAVGAFWTH-----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 333 ~~lL~~~~~~~~I~h-----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
..+++.+|+ ++.. ||..++.||+.+|+|+|+.|...++.+..+.+.+. |+++.. -+++++.+++.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhc
Confidence 357777776 4331 34446999999999999999998888888888774 766553 378999999999999
Q ss_pred ccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 408 EKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 408 ~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
|.+ +..+.+++++..+. ..+..++.++.+.+.+.+
T Consensus 388 ~~~~~~~m~~~a~~~~~~------~~~~~~~~~~~l~~~l~~ 423 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQ------NQGALQRTLQLLEPYLPP 423 (425)
T ss_pred CHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHhccc
Confidence 832 33444444444333 224345555555444433
No 59
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.13 E-value=1.5e-07 Score=92.01 Aligned_cols=355 Identities=14% Similarity=0.058 Sum_probs=177.4
Q ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCCCCC---CCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHH
Q 012735 17 QGHISPMLQLANILHSQGFTITIIHTSFNSP---NPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCL 93 (457)
Q Consensus 17 ~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~---~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (457)
.|--.-...||++|.++||+|+++++..... ......|+++..++...... .........+... ....+
T Consensus 20 GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~----~~~~~ 91 (405)
T TIGR03449 20 GGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEG----LDKEDLPTQLCAF----TGGVL 91 (405)
T ss_pred CCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCccc----CCHHHHHHHHHHH----HHHHH
Confidence 4667788999999999999999999753211 11112567777664311111 0111111111111 11223
Q ss_pred HHHhhccCCCCeeEEEeCCCc--chHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCC
Q 012735 94 AKLLADVEEEPIACLISDAML--PFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPVVELPPL 171 (457)
Q Consensus 94 ~~l~~~~~~~~pDlvi~D~~~--~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 171 (457)
..+++.... +||+|-+.... ..+..+++.+++|+|......... .. .+..
T Consensus 92 ~~~~~~~~~-~~Diih~h~~~~~~~~~~~~~~~~~p~v~t~h~~~~~---~~--------~~~~---------------- 143 (405)
T TIGR03449 92 RAEARHEPG-YYDLIHSHYWLSGQVGWLLRDRWGVPLVHTAHTLAAV---KN--------AALA---------------- 143 (405)
T ss_pred HHHhhccCC-CCCeEEechHHHHHHHHHHHHhcCCCEEEeccchHHH---HH--------Hhcc----------------
Confidence 233322111 79999776532 345667788999998765542210 00 0000
Q ss_pred CCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCC---CccccCccccCCCCCCCCCccC
Q 012735 172 KIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSI---PIFPIGPFHICIPASPSSLLTQ 248 (457)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~---p~~~vGp~~~~~~~~~~~~~~~ 248 (457)
... ........... ...+..++.++.++....+.- ...+.. ++..+..-.....- .. ..
T Consensus 144 -~~~------~~~~~~~~~~e--~~~~~~~d~vi~~s~~~~~~~-----~~~~~~~~~ki~vi~ngvd~~~~---~~-~~ 205 (405)
T TIGR03449 144 -DGD------TPEPEARRIGE--QQLVDNADRLIANTDEEARDL-----VRHYDADPDRIDVVAPGADLERF---RP-GD 205 (405)
T ss_pred -CCC------CCchHHHHHHH--HHHHHhcCeEEECCHHHHHHH-----HHHcCCChhhEEEECCCcCHHHc---CC-Cc
Confidence 000 00000111111 112456777777776543321 111111 12222211100000 00 01
Q ss_pred ccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC----C-CCeEE-EECCCCCCCCCCCCCCchhHHHh---
Q 012735 249 DQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC----K-LPFLW-VVRPGLTRGSDCLEPLPSGFMEM--- 319 (457)
Q Consensus 249 ~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~-~~~i~-~~~~~~~~~~~~~~~lp~~~~~~--- 319 (457)
.......+... +++.+++..|+... .+....++++++.+ + .++.+ .+++....+ ....+.+.+.
T Consensus 206 ~~~~~~~~~~~-~~~~~i~~~G~l~~--~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~g----~~~~~~l~~~~~~ 278 (405)
T TIGR03449 206 RATERARLGLP-LDTKVVAFVGRIQP--LKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGSG----LATPDALIELAAE 278 (405)
T ss_pred HHHHHHhcCCC-CCCcEEEEecCCCc--ccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCc----chHHHHHHHHHHH
Confidence 11112222211 23456677888764 33344455554432 2 12433 333211000 0011222221
Q ss_pred h--cCCCccccccChH---hhhcCCCCCCccc---c-cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecC
Q 012735 320 V--DGRGHLVKWAPQQ---EVLAHPAVGAFWT---H-NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLE 390 (457)
Q Consensus 320 ~--~~~~~~~~~vpq~---~lL~~~~~~~~I~---h-gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~ 390 (457)
. .+++.+.+++|+. ++|+.+++ +|. + |...++.||+.+|+|+|+.... .....+.+. +.|...+
T Consensus 279 ~~l~~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~ 351 (405)
T TIGR03449 279 LGIADRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVD 351 (405)
T ss_pred cCCCceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECC
Confidence 1 2567888999864 47888887 663 2 3345899999999999986653 344566663 6787776
Q ss_pred CCCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 391 NGLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 391 ~~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
. -+.++++++|.+++++.+ ...+++++++..+ ..+.++.++++++.+.+
T Consensus 352 ~-~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~--------~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 352 G-HDPADWADALARLLDDPRTRIRMGAAAVEHAA--------GFSWAATADGLLSSYRD 401 (405)
T ss_pred C-CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHH
Confidence 5 588999999999999832 2344444444332 35678888888877764
No 60
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.13 E-value=1.6e-07 Score=90.06 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=98.3
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHhhC---CCCeEEEECCCCCCCCCCCCCCchhHHHh-----hcCCCccccccChH
Q 012735 262 KSVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLWVVRPGLTRGSDCLEPLPSGFMEM-----VDGRGHLVKWAPQQ 333 (457)
Q Consensus 262 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~vpq~ 333 (457)
++.+++..|+... .+....++++++.. +..+.+.+.+... ..+.+.+. ..+|+.+.+++|+.
T Consensus 201 ~~~~i~~~g~~~~--~k~~~~li~~~~~~~~~~~~~~l~i~g~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~~ 270 (377)
T cd03798 201 DKKVILFVGRLVP--RKGIDYLIEALARLLKKRPDVHLVIVGDGP--------LREALEALAAELGLEDRVTFLGAVPHE 270 (377)
T ss_pred CceEEEEeccCcc--ccCHHHHHHHHHHHHhcCCCeEEEEEcCCc--------chHHHHHHHHhcCCcceEEEeCCCCHH
Confidence 4566777787664 33344444454432 2344444443320 11222222 23567888999965
Q ss_pred ---hhhcCCCCCCcc----cccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 334 ---EVLAHPAVGAFW----THNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 334 ---~lL~~~~~~~~I----~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
.++..+++ +| +-|..+++.||+.+|+|+|+-+.. ...+.+.+. +.|...+. -+.+++.+++.+++
T Consensus 271 ~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~----~~~~~~~~~-~~g~~~~~-~~~~~l~~~i~~~~ 342 (377)
T cd03798 271 EVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDVG----GIPEIITDG-ENGLLVPP-GDPEALAEAILRLL 342 (377)
T ss_pred HHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecCC----ChHHHhcCC-cceeEECC-CCHHHHHHHHHHHh
Confidence 46777777 55 235567899999999999986554 455667773 66777766 58999999999999
Q ss_pred cccchHH---HHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 407 VEKQGEE---IRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 407 ~~~~~~~---~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
++ +. .+++.+.+.+. -+.+..++.+.+.+++
T Consensus 343 ~~---~~~~~~~~~~~~~~~~--------~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 343 AD---PWLRLGRAARRRVAER--------FSWENVAERLLELYRE 376 (377)
T ss_pred cC---cHHHHhHHHHHHHHHH--------hhHHHHHHHHHHHHhh
Confidence 98 44 23333333333 3467777888777764
No 61
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.10 E-value=7.4e-08 Score=92.60 Aligned_cols=113 Identities=13% Similarity=0.089 Sum_probs=75.8
Q ss_pred cCCCccccccC-hH---hhhcCCCCCCccccc----ChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCC
Q 012735 321 DGRGHLVKWAP-QQ---EVLAHPAVGAFWTHN----GWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENG 392 (457)
Q Consensus 321 ~~~~~~~~~vp-q~---~lL~~~~~~~~I~hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~ 392 (457)
..++...+|++ +. .+++.+++ +|.-. ..+++.||+.+|+|+|+.... .....+.+. +.|..++.
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~----~~~e~~~~~-~~g~~~~~- 314 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDVG----GIPDIVDHG-VTGYLAKP- 314 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecCC----CChhheeCC-CceEEeCC-
Confidence 34557778998 43 46878887 77643 357999999999999876543 334455552 56776665
Q ss_pred CCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 393 LKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 393 ~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.+.+++.+++.+++++.+ ...+.+++++. ..+..+.++.++++++.+++
T Consensus 315 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 GDPEDLAEGIEWLLADPDEREELGEAAREL-------AENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhcCHHHHHHHHHHHHhh
Confidence 578999999999998821 12223333322 22445678888888887764
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.10 E-value=1.9e-07 Score=88.59 Aligned_cols=96 Identities=20% Similarity=0.279 Sum_probs=62.5
Q ss_pred CCCccccccC-hHhhhcCCCCCCcccccC----hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhc-cceecCCCCCH
Q 012735 322 GRGHLVKWAP-QQEVLAHPAVGAFWTHNG----WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWK-VGLQLENGLKR 395 (457)
Q Consensus 322 ~~~~~~~~vp-q~~lL~~~~~~~~I~hgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~ 395 (457)
.++.+.++.. -..++..+++ +|.-.. .+++.||+.+|+|+|+.+..+.+ ..+... | .|...+. .+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-CCH
Confidence 3445555533 3468888887 665542 57899999999999987654333 233443 5 7777765 578
Q ss_pred HHHHHHHHHHhcccc-hHHHHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKA 425 (457)
Q Consensus 396 ~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~ 425 (457)
+++.++|.++++|.+ ...+++++++..+.+
T Consensus 307 ~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 337 (348)
T cd03820 307 EALAEALLRLMEDEELRKRMGANARESAERF 337 (348)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 999999999999832 233444444444333
No 63
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=99.06 E-value=4.2e-08 Score=91.11 Aligned_cols=302 Identities=15% Similarity=0.118 Sum_probs=153.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCC-CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNS-PNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKC 85 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
|||.+--... .|+.-+-.+.++|.++||+|.+.+-.+.. ...-+..|+++..+...- ......+......
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g-------~~~~~Kl~~~~~R- 71 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHG-------DSLYGKLLESIER- 71 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCC-------CCHHHHHHHHHHH-
Confidence 4555444333 49999999999999999999998886432 222233688888887311 1111111111111
Q ss_pred chhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCccc
Q 012735 86 LVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPV 165 (457)
Q Consensus 86 ~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 165 (457)
..+++ ++.+.. +||++|+- ....+..+|.-+|+|+|.+.-...... .+....|..+
T Consensus 72 ---~~~l~-~~~~~~---~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~---------~~~Lt~Pla~------- 127 (335)
T PF04007_consen 72 ---QYKLL-KLIKKF---KPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIA---------QNRLTLPLAD------- 127 (335)
T ss_pred ---HHHHH-HHHHhh---CCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhc---------cceeehhcCC-------
Confidence 11122 222222 99999975 467788899999999999876532211 0111111100
Q ss_pred cCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCCCCCC
Q 012735 166 VELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPSSL 245 (457)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~~~ 245 (457)
.............+.++. +....-.+++.++ .++=|
T Consensus 128 ----------~i~~P~~~~~~~~~~~G~------~~~i~~y~G~~E~----------------ayl~~------------ 163 (335)
T PF04007_consen 128 ----------VIITPEAIPKEFLKRFGA------KNQIRTYNGYKEL----------------AYLHP------------ 163 (335)
T ss_pred ----------eeECCcccCHHHHHhcCC------cCCEEEECCeeeE----------------EeecC------------
Confidence 000000000000011000 0001112222211 11111
Q ss_pred ccCccccccccCCCCCCcEEEEEeccccc----CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhc
Q 012735 246 LTQDQSCIAWLDKQAPKSVIYVSFGSIAA----VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD 321 (457)
Q Consensus 246 ~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~ 321 (457)
+.++++..+-+.. .+++.|++=+.+... .....+.++++.+++.+.. ++.++... ..++-+ +..
T Consensus 164 F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~--------~~~~~~-~~~- 231 (335)
T PF04007_consen 164 FKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYE--------DQRELF-EKY- 231 (335)
T ss_pred CCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCc--------chhhHH-hcc-
Confidence 1122222333332 234556665544222 2345567788999888766 44443221 011111 111
Q ss_pred CCCcc-ccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHH
Q 012735 322 GRGHL-VKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEK 400 (457)
Q Consensus 322 ~~~~~-~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ 400 (457)
++.+ ..-++-.+||.++++ +|+-|| ....||...|+|.|.+ ..++-...-+.+.+. |. .. ...+++++.+
T Consensus 232 -~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~-~~~~~~ei~~ 302 (335)
T PF04007_consen 232 -GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LY-HSTDPDEIVE 302 (335)
T ss_pred -CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eE-ecCCHHHHHH
Confidence 1222 355666689999998 998777 7889999999999975 222333344556663 65 22 2247777777
Q ss_pred HHHHHh
Q 012735 401 TIRRVM 406 (457)
Q Consensus 401 ai~~il 406 (457)
.+.+.+
T Consensus 303 ~v~~~~ 308 (335)
T PF04007_consen 303 YVRKNL 308 (335)
T ss_pred HHHHhh
Confidence 554443
No 64
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.05 E-value=2.9e-07 Score=89.55 Aligned_cols=91 Identities=13% Similarity=0.138 Sum_probs=63.2
Q ss_pred cCCCccccccChH---hhhcCCCCCCcccc---cC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 321 DGRGHLVKWAPQQ---EVLAHPAVGAFWTH---NG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 321 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h---gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
.+|+.+.+++|+. .+|..+++ ++.. -| ..++.||+.+|+|+|+.-.. .....+... +.|...+.
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~~-- 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCEP-- 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeCC--
Confidence 3577888999965 47888887 6632 22 35789999999999987543 334556663 56766643
Q ss_pred CHHHHHHHHHHHhcccc-hHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQ-GEEIRSRIFR 420 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~-~~~~~~~a~~ 420 (457)
++++++++|.+++++.+ ...+.+++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~~ 377 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGRK 377 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 78999999999999832 3344454444
No 65
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.04 E-value=3e-07 Score=88.06 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=87.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHH-----hhcCCCccccccChH---h
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFME-----MVDGRGHLVKWAPQQ---E 334 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~-----~~~~~~~~~~~vpq~---~ 334 (457)
+.+++..|+.. +.+....+++++++.. ++-+.+.+.. ...+.+.+ ....|+.+.+|+|+. .
T Consensus 191 ~~~i~~~G~~~--~~K~~~~li~a~~~l~-~~~l~i~G~g--------~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 191 RPFFLFVGRLV--YYKGLDVLLEAAAALP-DAPLVIVGEG--------PLEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CcEEEEecccc--cccCHHHHHHHHHhcc-CcEEEEEeCC--------hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 45667777765 3455667888887776 3333332221 01122222 123678889999975 4
Q ss_pred hhcCCCCCCccc---ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccc
Q 012735 335 VLAHPAVGAFWT---HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQ 410 (457)
Q Consensus 335 lL~~~~~~~~I~---hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~ 410 (457)
+++.+++..+.+ +.| ..++.||+.+|+|+|+....+....... .. +.|...+. -+.+++.++|.++++|++
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~~-~~g~~~~~-~d~~~~~~~i~~l~~~~~ 334 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---HG-VTGLVVPP-GDPAALAEAIRRLLEDPE 334 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---CC-CceEEeCC-CCHHHHHHHHHHHHHCHH
Confidence 777777722222 234 3479999999999999765544433222 23 67776665 589999999999999832
Q ss_pred -hHHHHHHHHHH
Q 012735 411 -GEEIRSRIFRL 421 (457)
Q Consensus 411 -~~~~~~~a~~l 421 (457)
..++++++++.
T Consensus 335 ~~~~~~~~~~~~ 346 (357)
T cd03795 335 LRERLGEAARER 346 (357)
T ss_pred HHHHHHHHHHHH
Confidence 23444444443
No 66
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.02 E-value=2.2e-07 Score=89.44 Aligned_cols=108 Identities=16% Similarity=0.168 Sum_probs=73.5
Q ss_pred cCCCccccccChHh---hhcCCCCCCcccc----------cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccce
Q 012735 321 DGRGHLVKWAPQQE---VLAHPAVGAFWTH----------NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGL 387 (457)
Q Consensus 321 ~~~~~~~~~vpq~~---lL~~~~~~~~I~h----------gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~ 387 (457)
.+++.+.+++|+.+ +++.+++ +|.- |-.+++.||+++|+|+|+-+.. .+.+.+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 45677789998654 6878887 6532 2357999999999999987764 366777774 7888
Q ss_pred ecCCCCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012735 388 QLENGLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 388 ~l~~~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (457)
.++. -+++++.++|.++++|.+ ..++++++++..+ +..+.+..++.+.
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~-------~~~s~~~~~~~l~ 365 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLADPDLRARMGAAGRRRVE-------ERFDLRRQTAKLE 365 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH-------HHCCHHHHHHHHh
Confidence 7765 588999999999999832 2234444433321 3344555555543
No 67
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.01 E-value=3.8e-07 Score=87.46 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=73.0
Q ss_pred CCCccc-cccChH---hhhcCCCCCCccc----c--cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC
Q 012735 322 GRGHLV-KWAPQQ---EVLAHPAVGAFWT----H--NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN 391 (457)
Q Consensus 322 ~~~~~~-~~vpq~---~lL~~~~~~~~I~----h--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~ 391 (457)
+|+.+. .|+|+. .+++.+++ +|. - |..+++.||+.+|+|+|+.+..+ ...+... +.|...+.
T Consensus 247 ~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~~ 318 (366)
T cd03822 247 DRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVPP 318 (366)
T ss_pred CcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEcC
Confidence 455666 458864 47777777 662 2 44578999999999999987653 3445553 77777765
Q ss_pred CCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 392 GLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 392 ~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
-+.+++.+++.++++|.+ ..++++++++..+ + .+.++.++.+.+.+
T Consensus 319 -~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 319 -GDPAALAEAIRRLLADPELAQALRARAREYAR-------A-MSWERVAERYLRLL 365 (366)
T ss_pred -CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh-------h-CCHHHHHHHHHHHh
Confidence 468999999999999821 2334444444333 3 55777777777654
No 68
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.99 E-value=4.7e-07 Score=89.32 Aligned_cols=162 Identities=9% Similarity=0.095 Sum_probs=98.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHhhC-----CCCeEEEECCCCCCCCCCCCCCch-------hH---HHh--hcCCCcc
Q 012735 264 VIYVSFGSIAAVSEAEFLEIAWGLANC-----KLPFLWVVRPGLTRGSDCLEPLPS-------GF---MEM--VDGRGHL 326 (457)
Q Consensus 264 vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~-------~~---~~~--~~~~~~~ 326 (457)
.++++.|... +.+.+..+++|++.. ..+++++.+.+.. ...+.. ++ .++ +.+++.+
T Consensus 249 ~~i~~vGrl~--~~Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f 321 (439)
T TIGR02472 249 PPILAISRPD--RRKNIPSLVEAYGRSPKLQEMANLVLVLGCRDD-----IRKMESQQREVLQKVLLLIDRYDLYGKVAY 321 (439)
T ss_pred cEEEEEcCCc--ccCCHHHHHHHHHhChhhhhhccEEEEeCCccc-----cccccHHHHHHHHHHHHHHHHcCCCceEEe
Confidence 3566667765 455667777777532 2344444443321 111111 11 111 2356666
Q ss_pred ccccChHh---hhcCC----CCCCccccc---C-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCH
Q 012735 327 VKWAPQQE---VLAHP----AVGAFWTHN---G-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR 395 (457)
Q Consensus 327 ~~~vpq~~---lL~~~----~~~~~I~hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 395 (457)
.+++++.+ +++.+ ++ ||... | ..+++||+++|+|+|+.... ...+.+.+. ..|..++. -++
T Consensus 322 ~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv~~-~d~ 393 (439)
T TIGR02472 322 PKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLVDV-LDL 393 (439)
T ss_pred cCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEeCC-CCH
Confidence 77777655 45544 55 77643 3 45999999999999987653 345556553 56877766 589
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 396 ~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
++++++|.++++| +..+ +++++..++...+..+.+..++.+++.|
T Consensus 394 ~~la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 394 EAIASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred HHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 9999999999998 4322 3344433333335567888888887765
No 69
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.99 E-value=1.1e-06 Score=85.77 Aligned_cols=112 Identities=12% Similarity=0.067 Sum_probs=71.8
Q ss_pred CCCccccccChH---hhhcCCCCCCcccc---cCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCC
Q 012735 322 GRGHLVKWAPQQ---EVLAHPAVGAFWTH---NGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLK 394 (457)
Q Consensus 322 ~~~~~~~~vpq~---~lL~~~~~~~~I~h---gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 394 (457)
+++.+.+|+|+. .+|+.+++ +|.- -|. .++.||+++|+|+|+.+..+ ....+.+ |.+... . .+
T Consensus 250 ~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~-~-~~ 319 (398)
T cd03796 250 DRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLA-E-PD 319 (398)
T ss_pred CeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--Cceeec-C-CC
Confidence 557778999864 47778887 6542 243 49999999999999877652 2344444 444222 2 37
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 395 REEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 395 ~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
.+++.+++.+++++. .-+. .+....+....+..+.++.++++++.+++.
T Consensus 320 ~~~l~~~l~~~l~~~---~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l 368 (398)
T cd03796 320 VESIVRKLEEAISIL---RTGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDRI 368 (398)
T ss_pred HHHHHHHHHHHHhCh---hhhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 899999999999872 1110 112222222335567888888887777653
No 70
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.99 E-value=9e-07 Score=92.73 Aligned_cols=394 Identities=12% Similarity=0.117 Sum_probs=200.9
Q ss_pred CCcEEEEEcCC---------------CccCHHHHHHHHHHHHHCC--CeEEEEeCCCCCCC--------C----------
Q 012735 5 KGRRLVLFPLP---------------LQGHISPMLQLANILHSQG--FTITIIHTSFNSPN--------P---------- 49 (457)
Q Consensus 5 ~~~~il~~~~~---------------~~gH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~--------~---------- 49 (457)
+++.|++++.. +.|+..=.+.||++|+++| |+|.++|-...... .
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~~~ 247 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSSEN 247 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccccc
Confidence 46777777632 2346666799999999998 89999997532111 0
Q ss_pred -----CCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHHHHhhc----cCCCCeeEEEeCCCc--chHH
Q 012735 50 -----SSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLAKLLAD----VEEEPIACLISDAML--PFTQ 118 (457)
Q Consensus 50 -----~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~pDlvi~D~~~--~~~~ 118 (457)
...+|+..+.+|.+-....-....++..+..+.+.+...+.+.-+.+.++ ... .||+|-+-... ..+.
T Consensus 248 ~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~~-~pDvIHaHyw~sG~aa~ 326 (1050)
T TIGR02468 248 DGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHPV-WPYVIHGHYADAGDSAA 326 (1050)
T ss_pred ccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccCC-CCCEEEECcchHHHHHH
Confidence 01147777777766332333344445555555554444333211111111 111 59999887533 5677
Q ss_pred HHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhcc
Q 012735 119 AVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGA 198 (457)
Q Consensus 119 ~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (457)
.+++.+|||+|.+..+....-... ....+..+ ...+. .. ..+.....--...+
T Consensus 327 ~L~~~lgVP~V~T~HSLgr~K~~~-----ll~~g~~~-----------------~~~~~----~~-y~~~~Ri~~Ee~~l 379 (1050)
T TIGR02468 327 LLSGALNVPMVLTGHSLGRDKLEQ-----LLKQGRMS-----------------KEEIN----ST-YKIMRRIEAEELSL 379 (1050)
T ss_pred HHHHhhCCCEEEECccchhhhhhh-----hccccccc-----------------ccccc----cc-cchHHHHHHHHHHH
Confidence 789999999988766521100000 00000000 00000 00 01111111122235
Q ss_pred ccccEEEEcCchhhhHHHHHHHH---h------------h------cCCC--ccccCcc----ccCCCCC-C--------
Q 012735 199 KVSSGIIWNTFEDLEESALATLR---Q------------Q------FSIP--IFPIGPF----HICIPAS-P-------- 242 (457)
Q Consensus 199 ~~~~~~~~~~~~~le~~~~~~~~---~------------~------~~~p--~~~vGp~----~~~~~~~-~-------- 242 (457)
..++.++.+|..+.+.-+ ..+. + . +... +++-|-- .+..... +
T Consensus 380 ~~Ad~VIasT~qE~~eq~-~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~ 458 (1050)
T TIGR02468 380 DASEIVITSTRQEIEEQW-GLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEH 458 (1050)
T ss_pred HhcCEEEEeCHHHHHHHH-HHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccc
Confidence 677888888877665321 1110 0 0 0012 3443311 1110000 0
Q ss_pred --CCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCC-----CCeEEEECCCCCCCCCCCC----C
Q 012735 243 --SSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCK-----LPFLWVVRPGLTRGSDCLE----P 311 (457)
Q Consensus 243 --~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~i~~~~~~~~~~~~~~~----~ 311 (457)
....+.+.++..|+... ++ .++++.|... +.+.+..+++|+..+. ..+.++++.+.... . .. .
T Consensus 459 ~~~~~~~~~~~l~r~~~~p-dk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d-~-l~~~~~~ 532 (1050)
T TIGR02468 459 PAKPDPPIWSEIMRFFTNP-RK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDID-E-MSSGSSS 532 (1050)
T ss_pred cccccchhhHHHHhhcccC-CC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchhh-h-hhccchH
Confidence 00011122355566432 33 3455567766 4566667777776542 24444454322100 0 00 0
Q ss_pred CchhHH---Hhh--cCCCccccccChHh---hhcCC----CCCCcccc---cC-hhHHHHHHhhCCcccccCccchhhHH
Q 012735 312 LPSGFM---EMV--DGRGHLVKWAPQQE---VLAHP----AVGAFWTH---NG-WNSTLESICEGIPMICMPCFTDQKVN 375 (457)
Q Consensus 312 lp~~~~---~~~--~~~~~~~~~vpq~~---lL~~~----~~~~~I~h---gG-~~s~~eal~~gvP~v~~P~~~DQ~~n 375 (457)
.-..+. ++. .+++.+.+++++.+ ++..+ ++ ||+- =| -.++.||+++|+|+|+.... ..
T Consensus 533 ~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~ 606 (1050)
T TIGR02468 533 VLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKNG----GP 606 (1050)
T ss_pred HHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCCC----Cc
Confidence 001111 111 25566778888754 55544 35 7764 23 35999999999999998654 23
Q ss_pred HHHHHhhhccceecCCCCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 376 ARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 376 a~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
...+... .-|..++. -+++.|+++|.++++|.+ ...+.+++++..+. .+....++.+++.+.+.
T Consensus 607 ~EII~~g-~nGlLVdP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~--------FSWe~ia~~yl~~i~~~ 671 (1050)
T TIGR02468 607 VDIHRVL-DNGLLVDP-HDQQAIADALLKLVADKQLWAECRQNGLKNIHL--------FSWPEHCKTYLSRIASC 671 (1050)
T ss_pred HHHhccC-CcEEEECC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH--------CCHHHHHHHHHHHHHHH
Confidence 4455552 56877776 589999999999999832 23444444443322 55777777777666543
No 71
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.99 E-value=6.8e-07 Score=85.75 Aligned_cols=106 Identities=13% Similarity=0.104 Sum_probs=68.1
Q ss_pred cCCCccccccChHh---hhcCCCCCCccccc----ChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 321 DGRGHLVKWAPQQE---VLAHPAVGAFWTHN----GWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 321 ~~~~~~~~~vpq~~---lL~~~~~~~~I~hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
.+++.+.+|+++.+ ++..+++ +|.-. -.+++.||+++|+|+|+.+.. .....+.. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 35678889999554 6777887 55432 246899999999999997643 33444443 56665554
Q ss_pred CHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (457)
+.+++.++|.+++++.+ ...+.+++++. ..+..+.+..++.++
T Consensus 331 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~ 374 (375)
T cd03821 331 DVDALAAALRRALELPQRLKAMGENGRAL-------VEERFSWTAIAQQLL 374 (375)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhcCHHHHHHHhh
Confidence 45999999999999821 22333333333 113445666666554
No 72
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.98 E-value=9.7e-08 Score=89.51 Aligned_cols=158 Identities=13% Similarity=0.019 Sum_probs=101.0
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhCCCC-eEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccC-hHhhhcCCC
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANCKLP-FLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAP-QQEVLAHPA 340 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-q~~lL~~~~ 340 (457)
++|.+--||....-...+..++++...+... ..+.+.... . . +.+.+..... ....++. -.++++.+|
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~-------~-~-~~i~~~~~~~-~~~~~~~~~~~~m~~aD 237 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF-------K-G-KDLKEIYGDI-SEFEISYDTHKALLEAE 237 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC-------c-H-HHHHHHHhcC-CCcEEeccHHHHHHhhh
Confidence 6899999998863335555555666544221 333333221 0 1 2232222211 1122333 346888888
Q ss_pred CCCcccccChhHHHHHHhhCCcccccCc--cchhhHHHHHHH---hhhccceec-------------CC-CCCHHHHHHH
Q 012735 341 VGAFWTHNGWNSTLESICEGIPMICMPC--FTDQKVNARYVS---DVWKVGLQL-------------EN-GLKREEIEKT 401 (457)
Q Consensus 341 ~~~~I~hgG~~s~~eal~~gvP~v~~P~--~~DQ~~na~~v~---~~lG~g~~l-------------~~-~~~~~~l~~a 401 (457)
+ +|+-+|..|+ |++..|+|||+ ++ ..=|..||+++. . .|+.-.+ -. ..|++.|.++
T Consensus 238 l--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~ 312 (347)
T PRK14089 238 F--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLKA 312 (347)
T ss_pred H--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHHH
Confidence 8 9999999999 99999999988 54 457899999998 5 3554444 22 6899999999
Q ss_pred HHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012735 402 IRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVT 444 (457)
Q Consensus 402 i~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 444 (457)
+.+ +.. +++++..+++++.+. + ++++++++.+.|
T Consensus 313 i~~-~~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i~~ 346 (347)
T PRK14089 313 YKE-MDR---EKFFKKSKELREYLK----H-GSAKNVAKILKE 346 (347)
T ss_pred HHH-HHH---HHHHHHHHHHHHHhc----C-CHHHHHHHHHhc
Confidence 987 333 567777777777764 4 667777666554
No 73
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.92 E-value=1.7e-07 Score=90.20 Aligned_cols=130 Identities=17% Similarity=0.153 Sum_probs=85.6
Q ss_pred CCcEEEEEecccccC-CHHHHHHHHHHHhhCCC-CeEEEECCCCCCCCCCCCCCchhHHHh---h---cCCCccccccCh
Q 012735 261 PKSVIYVSFGSIAAV-SEAEFLEIAWGLANCKL-PFLWVVRPGLTRGSDCLEPLPSGFMEM---V---DGRGHLVKWAPQ 332 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~-~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~---~---~~~~~~~~~vpq 332 (457)
+++.|++++|..... ..+.+..++++++.... ++.+.+.+.. ...+.+.+. . .+|+.+.++.++
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~--------~~~~~l~~~~~~~~~~~~~v~~~~~~~~ 268 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP--------RTRPRIREAGLEFLGHHPNVLLISPLGY 268 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC--------ChHHHHHHHHHhhccCCCCEEEECCcCH
Confidence 456778888876642 46677888888876533 3445544321 011222221 1 346666666654
Q ss_pred H---hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 333 Q---EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 333 ~---~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
. .++..+++ ||+.+| |.+.||+..|+|+|+++...+ +..+.+. |++..... +++.|.+++.+++++
T Consensus 269 ~~~~~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~-g~~~~~~~--~~~~i~~~i~~ll~~ 337 (363)
T cd03786 269 LYFLLLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVES-GTNVLVGT--DPEAILAAIEKLLSD 337 (363)
T ss_pred HHHHHHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhhe-eeEEecCC--CHHHHHHHHHHHhcC
Confidence 4 46777888 999999 788899999999999874322 3344553 77765543 689999999999998
No 74
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.89 E-value=5.5e-07 Score=85.46 Aligned_cols=154 Identities=13% Similarity=0.063 Sum_probs=91.8
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHh--hcCCCccccccChHh---hhcCC
Q 012735 265 IYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEM--VDGRGHLVKWAPQQE---VLAHP 339 (457)
Q Consensus 265 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~--~~~~~~~~~~vpq~~---lL~~~ 339 (457)
+.+..|... +.+....++++++..+.++++.-.+.. ...+-....+. ..+++.+.+++++.+ +++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD------PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC------HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 444557664 345556677888877766554333221 01111111112 246778889999754 67778
Q ss_pred CCCCccc--ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchHHHHH
Q 012735 340 AVGAFWT--HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEIRS 416 (457)
Q Consensus 340 ~~~~~I~--hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~ 416 (457)
++-++-+ +-| ..++.||+++|+|+|+.... ...+.+.+. ..|...+. .+++.+++.+++.. . ++
T Consensus 245 d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~--~~ 311 (335)
T cd03802 245 RALLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D--RA 311 (335)
T ss_pred cEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--HH
Confidence 8722222 234 35899999999999987653 344555552 36766654 99999999998765 2 23
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 417 RIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 417 ~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
++++.. . +..+.++.+++.++.+
T Consensus 312 ~~~~~~---~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 312 ACRRRA---E----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHH---H----HhCCHHHHHHHHHHHh
Confidence 333222 1 3455777777777654
No 75
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.86 E-value=2.2e-06 Score=82.06 Aligned_cols=94 Identities=13% Similarity=0.112 Sum_probs=62.9
Q ss_pred CCCccccccCh-HhhhcCCCCCCcccc----cC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCH
Q 012735 322 GRGHLVKWAPQ-QEVLAHPAVGAFWTH----NG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR 395 (457)
Q Consensus 322 ~~~~~~~~vpq-~~lL~~~~~~~~I~h----gG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 395 (457)
+++.+.++.+. ..+|+.+++ +|+= -| .+++.||+++|+|+|+.... .....+.+. +.|..++. -+.
T Consensus 246 ~~v~~~g~~~~~~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~ 317 (355)
T cd03819 246 DRVTFVGHCSDMPAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDHG----GARETVRPG-ETGLLVPP-GDA 317 (355)
T ss_pred ceEEEcCCcccHHHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCCC----CcHHHHhCC-CceEEeCC-CCH
Confidence 56677777553 458888888 5532 23 36999999999999886543 345566663 57877765 589
Q ss_pred HHHHHHHHHHhc-cc-chHHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMV-EK-QGEEIRSRIFRLKE 423 (457)
Q Consensus 396 ~~l~~ai~~il~-~~-~~~~~~~~a~~l~~ 423 (457)
+++.++|..++. +. ++..++++|++..+
T Consensus 318 ~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 318 EALAQALDQILSLLPEGRAKMFAKARMCVE 347 (355)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 999999975554 42 23445555555444
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.85 E-value=2.2e-06 Score=82.21 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=92.5
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHhhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHhh-----cCCCccccccC
Q 012735 262 KSVIYVSFGSIAAVSEAEFLEIAWGLANC-----KLPFLWVVRPGLTRGSDCLEPLPSGFMEMV-----DGRGHLVKWAP 331 (457)
Q Consensus 262 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~~~~vp 331 (457)
++.+++..|+... .+....++++++.. +.++++ ++.+. ..+.+.+.. .+|+.+.++..
T Consensus 187 ~~~~~l~~g~~~~--~kg~~~li~a~~~l~~~~~~~~l~i-~G~g~---------~~~~~~~~~~~~~~~~~v~~~g~~~ 254 (360)
T cd04951 187 DTFVILAVGRLVE--AKDYPNLLKAFAKLLSDYLDIKLLI-AGDGP---------LRATLERLIKALGLSNRVKLLGLRD 254 (360)
T ss_pred CCEEEEEEeeCch--hcCcHHHHHHHHHHHhhCCCeEEEE-EcCCC---------cHHHHHHHHHhcCCCCcEEEecccc
Confidence 3467777787653 34445555555432 233333 33221 112222211 24566777765
Q ss_pred h-HhhhcCCCCCCccccc----ChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 332 Q-QEVLAHPAVGAFWTHN----GWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 332 q-~~lL~~~~~~~~I~hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
+ ..+|+.+++ +|.-. ..+++.||+.+|+|+|+. |...+...+++. |.. ++. -+.+++.+++.+++
T Consensus 255 ~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~--~~~-~~~~~~~~~i~~ll 324 (360)
T cd04951 255 DIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLI--VPI-SDPEALANKIDEIL 324 (360)
T ss_pred cHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceE--eCC-CCHHHHHHHHHHHH
Confidence 4 468888888 55433 257899999999999874 445566666652 544 333 58899999999998
Q ss_pred cccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 407 VEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 407 ~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
++. +.+++...+-++.+. +..+.+..++++++.++
T Consensus 325 ~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 325 KMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLYT 359 (360)
T ss_pred hCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHhh
Confidence 431 444444333333333 45567777777776653
No 77
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.84 E-value=4.6e-06 Score=81.26 Aligned_cols=161 Identities=11% Similarity=0.155 Sum_probs=100.6
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhC---CCCeEE-EECCCCCCCCCCCCCCchhHHHh-----hcCCCccccccChH
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLW-VVRPGLTRGSDCLEPLPSGFMEM-----VDGRGHLVKWAPQQ 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~-~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~vpq~ 333 (457)
++.+++.|... +.+.+..++++++.+ +..+-+ .++.+. ..+.+.+. ..+++.+.+|+|+.
T Consensus 222 ~~~il~vGrl~--~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~---------~~~~l~~~~~~~~l~~~V~~~G~~~~~ 290 (406)
T PRK15427 222 PLEIISVARLT--EKKGLHVAIEACRQLKEQGVAFRYRILGIGP---------WERRLRTLIEQYQLEDVVEMPGFKPSH 290 (406)
T ss_pred CeEEEEEeCcc--hhcCHHHHHHHHHHHHhhCCCEEEEEEECch---------hHHHHHHHHHHcCCCCeEEEeCCCCHH
Confidence 45566677776 344555566666532 333433 333321 11222221 23567888999976
Q ss_pred h---hhcCCCCCCcccc---------cCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHH
Q 012735 334 E---VLAHPAVGAFWTH---------NGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEK 400 (457)
Q Consensus 334 ~---lL~~~~~~~~I~h---------gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ 400 (457)
+ ++..+++ +|.- -|. .++.||+.+|+|+|+.... ...+.+++. ..|...+. -+++++++
T Consensus 291 el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~lv~~-~d~~~la~ 362 (406)
T PRK15427 291 EVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGWLVPE-NDAQALAQ 362 (406)
T ss_pred HHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceEEeCC-CCHHHHHH
Confidence 4 7778887 6642 244 6789999999999987654 345566663 57877765 58999999
Q ss_pred HHHHHhc-ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 401 TIRRVMV-EKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 401 ai~~il~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+|.++++ | ++.+ +++++..++...+..+.+..++++.+.+++
T Consensus 363 ai~~l~~~d---~~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 363 RLAAFSQLD---TDEL---APVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHhCC---HHHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999998 7 3322 223333333333556688999999888875
No 78
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.84 E-value=1.6e-06 Score=83.27 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=87.3
Q ss_pred EEEecccccCCHHHHHHHHHHHhhCCCCe-EEEECCCCCCCCCCCCCCchhHH--HhhcCCCccccccChHh---hhcCC
Q 012735 266 YVSFGSIAAVSEAEFLEIAWGLANCKLPF-LWVVRPGLTRGSDCLEPLPSGFM--EMVDGRGHLVKWAPQQE---VLAHP 339 (457)
Q Consensus 266 ~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~~~~~vpq~~---lL~~~ 339 (457)
++..|+... .+....++++++....++ ++.++.+.. ...+-+.+. ....+++.+.+++|+.+ ++..+
T Consensus 196 i~~~G~~~~--~Kg~~~li~a~~~l~~~~~l~ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~a 268 (363)
T cd04955 196 YLLVGRIVP--ENNIDDLIEAFSKSNSGKKLVIVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYA 268 (363)
T ss_pred EEEEecccc--cCCHHHHHHHHHhhccCceEEEEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhC
Confidence 345677763 455666777777664322 334443310 011112222 12236778889999764 56666
Q ss_pred CCCCcccccCh-----hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchHHH
Q 012735 340 AVGAFWTHNGW-----NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEI 414 (457)
Q Consensus 340 ~~~~~I~hgG~-----~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~ 414 (457)
++ ++.++-. +++.||+.+|+|+|+....+ +.+.+... |. ..+. . +.+++++.+++++ +..
T Consensus 269 d~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~--~~~~--~-~~l~~~i~~l~~~---~~~ 333 (363)
T cd04955 269 AL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AI--YFKV--G-DDLASLLEELEAD---PEE 333 (363)
T ss_pred CE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-ee--EecC--c-hHHHHHHHHHHhC---HHH
Confidence 66 5544322 58999999999999876542 22222221 33 2332 1 1299999999998 433
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 415 RSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 415 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
++ ++++..++...+..+.+..++.+++.+
T Consensus 334 ~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 334 VS---AMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 22 233333333335566788888877664
No 79
>PLN02275 transferase, transferring glycosyl groups
Probab=98.84 E-value=4.2e-06 Score=80.70 Aligned_cols=320 Identities=14% Similarity=0.107 Sum_probs=159.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCCCCCCC--CCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGF-TITIIHTSFNSPN--PSSHPHLTFHFIQENLSASEASTDDLVAFVSLLN 82 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~~~~~~~--~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 82 (457)
+.|+.++..+-.|.-..+..++..|+++|| +|++++....... .....|+..+.++. +...........++..+.
T Consensus 4 ~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~~ 81 (371)
T PLN02275 4 RGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALLL 81 (371)
T ss_pred ccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC--cccccccccchHHHHHHH
Confidence 556677777888888999999999999986 7999987532221 12235688888764 111111111222111111
Q ss_pred HhcchhHHHHHHHH-hhccCCCCeeEEEeCC-Ccc----hHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCC
Q 012735 83 TKCLVPFRDCLAKL-LADVEEEPIACLISDA-MLP----FTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPI 156 (457)
Q Consensus 83 ~~~~~~~~~~l~~l-~~~~~~~~pDlvi~D~-~~~----~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 156 (457)
... ..+..++..+ .+.. +||+|++.. ... .+..++...++|+|......... . .. ...
T Consensus 82 ~~~-~~~~~~~~~~~~~~~---~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~-~~------~~~--- 145 (371)
T PLN02275 82 KVA-IQFLMLLWFLCVKIP---RPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYT--L-LA------LSL--- 145 (371)
T ss_pred HHH-HHHHHHHHHHHhhCC---CCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHH--H-Hh------ccc---
Confidence 110 1111122211 1222 999998743 222 23456677899998864432110 0 00 000
Q ss_pred CCCCCCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhc-cccccEEEEcCchhhhHHHHHHHHhhcCCC--ccccCc
Q 012735 157 QDSKGQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDG-AKVSSGIIWNTFEDLEESALATLRQQFSIP--IFPIGP 233 (457)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~le~~~~~~~~~~~~~p--~~~vGp 233 (457)
.......+........ .+.++.++..|...-+.- .+.+..+ +++-|.
T Consensus 146 -------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l-----~~~~g~~i~vi~n~~ 195 (371)
T PLN02275 146 -------------------------GRSHPLVRLYRWYERHYGKMADGHLCVTKAMQHEL-----DQNWGIRATVLYDQP 195 (371)
T ss_pred -------------------------CCCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHH-----HHhcCCCeEEECCCC
Confidence 0011112222222222 356777777665433221 2212222 222221
Q ss_pred cccCCCCCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhC--------------------CCC
Q 012735 234 FHICIPASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANC--------------------KLP 293 (457)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~--------------------~~~ 293 (457)
. .. ..+...+ .. +. .+++.++++.|.... .+.+..+++|+... ..+
T Consensus 196 -~-~~------f~~~~~~-~~-~~--~~~~~~i~~~grl~~--~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 261 (371)
T PLN02275 196 -P-EF------FRPASLE-IR-LR--PNRPALVVSSTSWTP--DEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPR 261 (371)
T ss_pred -H-HH------cCcCCch-hc-cc--CCCcEEEEEeCceec--cCCHHHHHHHHHHHHhhhhhccccccccccccccCCC
Confidence 1 00 0011100 01 11 123345555566653 33344455554322 122
Q ss_pred e-EEEECCCCCCCCCCCCCCchhHHHhhc----CCCccc-cccChHh---hhcCCCCCCccc-c-----cC-hhHHHHHH
Q 012735 294 F-LWVVRPGLTRGSDCLEPLPSGFMEMVD----GRGHLV-KWAPQQE---VLAHPAVGAFWT-H-----NG-WNSTLESI 357 (457)
Q Consensus 294 ~-i~~~~~~~~~~~~~~~~lp~~~~~~~~----~~~~~~-~~vpq~~---lL~~~~~~~~I~-h-----gG-~~s~~eal 357 (457)
+ ++.++.+. .-+.+++... +|+.+. .|+|+.+ +|+.+|+ +|. + -| -+++.||+
T Consensus 262 i~l~ivG~G~---------~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~p~~llEAm 330 (371)
T PLN02275 262 LLFIITGKGP---------QKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDLPMKVVDMF 330 (371)
T ss_pred eEEEEEeCCC---------CHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccccHHHHHHH
Confidence 3 33344332 1133332222 344544 4788765 5888888 763 1 12 35899999
Q ss_pred hhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 358 CEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 358 ~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
++|+|+|+.... .+.+.+++. +.|...+ ++++++++|.++|
T Consensus 331 A~G~PVVa~~~g----g~~eiv~~g-~~G~lv~---~~~~la~~i~~l~ 371 (371)
T PLN02275 331 GCGLPVCAVSYS----CIGELVKDG-KNGLLFS---SSSELADQLLELL 371 (371)
T ss_pred HCCCCEEEecCC----ChHHHccCC-CCeEEEC---CHHHHHHHHHHhC
Confidence 999999987542 366677774 6788875 5889999998775
No 80
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.84 E-value=2.6e-06 Score=81.47 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=59.7
Q ss_pred cCCCccccccChHh---hhcCCCCCCccc----------ccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccce
Q 012735 321 DGRGHLVKWAPQQE---VLAHPAVGAFWT----------HNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGL 387 (457)
Q Consensus 321 ~~~~~~~~~vpq~~---lL~~~~~~~~I~----------hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~ 387 (457)
++|+.+.+++|+.+ +++.+++ +|. -|..+++.||+++|+|+|+.+.. .....+.+. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 36678889998544 7777887 665 23457999999999999987653 233455552 4787
Q ss_pred ecCCCCCHHHHHHHHHHHhcc
Q 012735 388 QLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 388 ~l~~~~~~~~l~~ai~~il~~ 408 (457)
..+. -+.+++.++|..++++
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~ 327 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDD 327 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhC
Confidence 7765 4899999999999998
No 81
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.83 E-value=5.1e-06 Score=80.72 Aligned_cols=164 Identities=13% Similarity=0.086 Sum_probs=96.8
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhC--CCCeEEEECCCCCCCCCCCCCCchhHHHhh---c---CCCcc-ccccChH
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANC--KLPFLWVVRPGLTRGSDCLEPLPSGFMEMV---D---GRGHL-VKWAPQQ 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~---~---~~~~~-~~~vpq~ 333 (457)
..+++..|... +.+.+..++++++.. +..+++..++.. ...+-+.+.+.. . .++.. ..++|+.
T Consensus 201 ~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 201 RPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPD------TPEVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred ceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCC------cHHHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 34556667766 345566777777765 344444433321 011112222211 1 22333 3677754
Q ss_pred ---hhhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCC----HHHHHHH
Q 012735 334 ---EVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLK----REEIEKT 401 (457)
Q Consensus 334 ---~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~----~~~l~~a 401 (457)
.++..+|+ +|.= |...++.||+.+|+|+|+.... ...+.++.. +.|..++. +.+ .+++.++
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~-~~G~~~~~~~~~~~~~~~~l~~~ 345 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDG-ETGFLVPPDNSDADGFQAELAKA 345 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCC-CceEEcCCCCCcccchHHHHHHH
Confidence 47888887 6642 2345789999999999986643 456667764 67888876 221 2899999
Q ss_pred HHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 402 IRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 402 i~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
|.++++|.+ ...+.+++++.. .+..+.+..++.+++.+++
T Consensus 346 i~~l~~~~~~~~~~~~~a~~~~-------~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 346 INILLADPELAKKMGIAGRKRA-------EEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHhCHHHHHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHHh
Confidence 999998821 223333333322 2345678888888887765
No 82
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.80 E-value=1.5e-05 Score=81.79 Aligned_cols=90 Identities=13% Similarity=0.072 Sum_probs=61.1
Q ss_pred hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh----cccchHHHHHHHHHHHHHH
Q 012735 350 WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM----VEKQGEEIRSRIFRLKEKA 425 (457)
Q Consensus 350 ~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il----~~~~~~~~~~~a~~l~~~~ 425 (457)
..++.||+++|+|+|+.-.. .....+++. .-|..++. -++++++++|.+++ .| +..+++. ++..
T Consensus 657 GLvvLEAMAcGlPVVAT~~G----G~~EiV~dg-~tGfLVdp-~D~eaLA~aL~~ll~kll~d---p~~~~~m---s~~a 724 (784)
T TIGR02470 657 GLTVLEAMTCGLPTFATRFG----GPLEIIQDG-VSGFHIDP-YHGEEAAEKIVDFFEKCDED---PSYWQKI---SQGG 724 (784)
T ss_pred CHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHHHHhcCC---HHHHHHH---HHHH
Confidence 35999999999999886554 466677773 67888877 57899999999876 46 4443332 2222
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhccc
Q 012735 426 NHSWKQGRSSFESINSLVTHILSLET 451 (457)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (457)
++.+.+..+.+..++.+++...-+.+
T Consensus 725 ~~rV~~~FSW~~~A~~ll~l~~~~~~ 750 (784)
T TIGR02470 725 LQRIYEKYTWKIYSERLLTLAGIYGF 750 (784)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhhhhH
Confidence 22222456688888888877754443
No 83
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.80 E-value=1.7e-06 Score=82.08 Aligned_cols=130 Identities=15% Similarity=0.211 Sum_probs=77.6
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhCC---CCeEEEECCCCCCCCCCCCCCchhH---HHhh--cCCCccccccCh
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANCK---LPFLWVVRPGLTRGSDCLEPLPSGF---MEMV--DGRGHLVKWAPQ 332 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~---~~~i~~~~~~~~~~~~~~~~lp~~~---~~~~--~~~~~~~~~vpq 332 (457)
+++.+++..|+... .+....++++++.+. ..+-+.+.+... ..+.. .+.. .+++.+.++.+.
T Consensus 187 ~~~~~i~~~g~~~~--~k~~~~~i~~~~~l~~~~~~~~l~i~G~~~--------~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (353)
T cd03811 187 PDGPVILAVGRLSP--QKGFDTLIRAFALLRKEGPDARLVILGDGP--------LREELEALAKELGLADRVHFLGFQSN 256 (353)
T ss_pred CCceEEEEEecchh--hcChHHHHHHHHHhhhcCCCceEEEEcCCc--------cHHHHHHHHHhcCCCccEEEecccCC
Confidence 34567777787763 344455555555432 233333322210 11111 1111 245667777774
Q ss_pred -HhhhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHH---HHHHHH
Q 012735 333 -QEVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEI---EKTIRR 404 (457)
Q Consensus 333 -~~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l---~~ai~~ 404 (457)
.++++.+++ +|.- |..+++.||+.+|+|+|+.... .....+.+. +.|...+. -+.+.+ .+++..
T Consensus 257 ~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~~~~~~~~~~i~~ 328 (353)
T cd03811 257 PYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-GDEAALAAAALALLD 328 (353)
T ss_pred HHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-CCHHHHHHHHHHHHh
Confidence 468888887 6632 3357899999999999986544 556777774 78888776 477777 455555
Q ss_pred Hhcc
Q 012735 405 VMVE 408 (457)
Q Consensus 405 il~~ 408 (457)
++.+
T Consensus 329 ~~~~ 332 (353)
T cd03811 329 LLLD 332 (353)
T ss_pred ccCC
Confidence 5665
No 84
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.79 E-value=2.1e-07 Score=89.57 Aligned_cols=158 Identities=13% Similarity=0.167 Sum_probs=92.7
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHhhC-----CCCeEEEECCCCCCCCCCCCCCchhHHHhh--cCCCccccccChH-
Q 012735 262 KSVIYVSFGSIAAVSEAEFLEIAWGLANC-----KLPFLWVVRPGLTRGSDCLEPLPSGFMEMV--DGRGHLVKWAPQQ- 333 (457)
Q Consensus 262 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vpq~- 333 (457)
+++|+++.+-... ..+.+..+++++... +..+++...... .....+.+.. .+|+++.+.+++.
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNP--------VVREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCCh--------HHHHHHHHHhCCCCCEEEECCCChHH
Confidence 3566665543321 124467777777653 334444432211 0111122222 2466777766643
Q ss_pred --hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccch
Q 012735 334 --EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQG 411 (457)
Q Consensus 334 --~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~ 411 (457)
.+++++++ +|+..|.. +.||+.+|+|+|.++..++++. +... |.+..+. .++++|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChhH-HHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 56777777 99987654 7999999999999976665553 2333 7666553 4899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 412 EEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 412 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+..+++...-...+. + ..+.+.+++.|++|
T Consensus 335 ~~~~~~~~~~~~~~g----~----~~a~~ri~~~l~~~ 364 (365)
T TIGR00236 335 PDEYKKMSNASNPYG----D----GEASERIVEELLNH 364 (365)
T ss_pred hHHHHHhhhcCCCCc----C----chHHHHHHHHHHhh
Confidence 655544433222221 2 34555555655553
No 85
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.79 E-value=1.1e-05 Score=77.03 Aligned_cols=109 Identities=19% Similarity=0.206 Sum_probs=68.6
Q ss_pred CCCccccccC-hHhhhcCCCCCCcccccC----hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHH
Q 012735 322 GRGHLVKWAP-QQEVLAHPAVGAFWTHNG----WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKRE 396 (457)
Q Consensus 322 ~~~~~~~~vp-q~~lL~~~~~~~~I~hgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 396 (457)
.++.+.+... ...+++.+++ +|..+. .+++.||+.+|+|+|+... ..+...+.+ .|..++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-CCHH
Confidence 3444445444 3468888888 776544 4799999999999998544 344555544 3444444 4789
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 397 EIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 397 ~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
++.+++.+++++ +..+ +++++..++...+.-+.++.++.+++.+
T Consensus 321 ~l~~~i~~l~~~---~~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLAD---PALR---QALGEAARERIEENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhC---hHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 999999999998 3222 2222222222225566777777777654
No 86
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.78 E-value=2.2e-06 Score=83.27 Aligned_cols=151 Identities=9% Similarity=0.002 Sum_probs=89.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhC---CCCe-EEEECCCCCCCCCCCCCCchhHHHhhcC---CC-ccccccChHhhh
Q 012735 265 IYVSFGSIAAVSEAEFLEIAWGLANC---KLPF-LWVVRPGLTRGSDCLEPLPSGFMEMVDG---RG-HLVKWAPQQEVL 336 (457)
Q Consensus 265 v~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~---~~-~~~~~vpq~~lL 336 (457)
+.+..|... ..+.+..++++++.. ...+ ++.++.+. .-+.+.+..++ +. .+.++.+..+++
T Consensus 230 ~~l~vGRL~--~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp---------~~~~L~~~a~~l~l~~~vf~G~~~~~~~~ 298 (462)
T PLN02846 230 GAYYIGKMV--WSKGYKELLKLLHKHQKELSGLEVDLYGSGE---------DSDEVKAAAEKLELDVRVYPGRDHADPLF 298 (462)
T ss_pred EEEEEecCc--ccCCHHHHHHHHHHHHhhCCCeEEEEECCCc---------cHHHHHHHHHhcCCcEEEECCCCCHHHHH
Confidence 344456666 456677777777642 1123 45555543 22333332221 11 234666666799
Q ss_pred cCCCCCCccccc----ChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchH
Q 012735 337 AHPAVGAFWTHN----GWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGE 412 (457)
Q Consensus 337 ~~~~~~~~I~hg----G~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~ 412 (457)
+..|+ ||.-+ -..++.|||++|+|+|+....+ + ..+.+. +-|... -+.+++.+++.++|.+.. .
T Consensus 299 ~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~---~~~~~~a~ai~~~l~~~~-~ 366 (462)
T PLN02846 299 HDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY---DDGKGFVRATLKALAEEP-A 366 (462)
T ss_pred HhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec---CCHHHHHHHHHHHHccCc-h
Confidence 88888 88774 3579999999999999987553 1 334332 444333 268899999999998621 1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 413 EIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 413 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
..+.+++ +.-|.+.+++.+++.++=.
T Consensus 367 ~~~~~a~-----------~~~SWe~~~~~l~~~~~~~ 392 (462)
T PLN02846 367 PLTDAQR-----------HELSWEAATERFLRVADLD 392 (462)
T ss_pred hHHHHHH-----------HhCCHHHHHHHHHHHhccC
Confidence 1222211 2355778888887776533
No 87
>PLN00142 sucrose synthase
Probab=98.78 E-value=1.4e-06 Score=89.41 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=61.9
Q ss_pred cccc---cCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHH----hcccchHHHH
Q 012735 344 FWTH---NGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRV----MVEKQGEEIR 415 (457)
Q Consensus 344 ~I~h---gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~i----l~~~~~~~~~ 415 (457)
||.- -|. .++.||+.+|+|+|+.... .....+++. .-|..++. -++++++++|.++ +.| +..+
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G~~EIV~dG-~tG~LV~P-~D~eaLA~aI~~lLekLl~D---p~lr 740 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQG----GPAEIIVDG-VSGFHIDP-YHGDEAANKIADFFEKCKED---PSYW 740 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCCC----CHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHHHHhcCC---HHHH
Confidence 6643 444 4899999999999886543 456667763 56888876 5788888888764 466 4443
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhccc
Q 012735 416 SRIFRLKEKANHSWKQGRSSFESINSLVTHILSLET 451 (457)
Q Consensus 416 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (457)
++.. +..++...+..+.+..++.+++...-+.+
T Consensus 741 ~~mg---~~Ar~rv~e~FSWe~~A~rll~L~~~~~~ 773 (815)
T PLN00142 741 NKIS---DAGLQRIYECYTWKIYAERLLTLGGVYGF 773 (815)
T ss_pred HHHH---HHHHHHHHHhCCHHHHHHHHHHHHhhcch
Confidence 3322 22222222445678888888887755544
No 88
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.73 E-value=1.8e-06 Score=82.70 Aligned_cols=106 Identities=14% Similarity=0.162 Sum_probs=66.9
Q ss_pred cCCCccccccChH---hhhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 321 DGRGHLVKWAPQQ---EVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 321 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
.+++.+.+++|+. .+|+.+++ +|.- |..+++.||+.+|+|+|+.... .....+.+ .|..+.. -
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~-~ 321 (365)
T cd03809 252 GDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP-L 321 (365)
T ss_pred CCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-C
Confidence 4667888999865 47777887 5532 3356899999999999986542 22222333 2334443 4
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (457)
+.+++.++|.++++| +..+.+..+-+.... +..+.++.++.++
T Consensus 322 ~~~~~~~~i~~l~~~---~~~~~~~~~~~~~~~----~~~sw~~~~~~~~ 364 (365)
T cd03809 322 DPEALAAAIERLLED---PALREELRERGLARA----KRFSWEKTARRTL 364 (365)
T ss_pred CHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HhCCHHHHHHHHh
Confidence 799999999999998 444444333332222 2344666666554
No 89
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.71 E-value=3.8e-06 Score=80.72 Aligned_cols=130 Identities=14% Similarity=0.155 Sum_probs=80.6
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhCCCCe-EEEECCCCCCCCCCCCCCchhHHHh-----hcCCCccccccCh--H-
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANCKLPF-LWVVRPGLTRGSDCLEPLPSGFMEM-----VDGRGHLVKWAPQ--Q- 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~~~~~~vpq--~- 333 (457)
+.+++..|.......+.+..+++++.+....+ ++.++.+. ..+.+.+. .++++.+.+|+++ .
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~---------~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~ 250 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS---------DFEKCKAYSRELGIEQRIIWHGWQSQPWEV 250 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc---------cHHHHHHHHHHcCCCCeEEEecccCCcHHH
Confidence 34566777765323455667788887654333 33444332 11222221 2356778888753 2
Q ss_pred --hhhcCCCCCCcccc----cChhHHHHHHhhCCcccccC-ccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 334 --EVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMP-CFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 334 --~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P-~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
+.++.+++ +|.. |-..++.||+++|+|+|+.. ..+ ..+.+++. ..|..++. -+.++++++|.+++
T Consensus 251 ~~~~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~ 322 (359)
T PRK09922 251 VQQKIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-GNIDEFVGKLNKVI 322 (359)
T ss_pred HHHHHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-CCHHHHHHHHHHHH
Confidence 24545566 6643 33579999999999999876 332 23455553 56777765 58999999999999
Q ss_pred ccc
Q 012735 407 VEK 409 (457)
Q Consensus 407 ~~~ 409 (457)
+|.
T Consensus 323 ~~~ 325 (359)
T PRK09922 323 SGE 325 (359)
T ss_pred hCc
Confidence 984
No 90
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.70 E-value=4.8e-06 Score=81.14 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=73.4
Q ss_pred CCCccccccCh-HhhhcCCCCCCcc--cc--cCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCH
Q 012735 322 GRGHLVKWAPQ-QEVLAHPAVGAFW--TH--NGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR 395 (457)
Q Consensus 322 ~~~~~~~~vpq-~~lL~~~~~~~~I--~h--gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 395 (457)
+++.+.+++++ ..+++.+++ +| ++ .|. +.+.|||.+|+|+|+.+...+.. .... |.|..+. -++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 56778889985 358888888 65 22 454 46999999999999988643221 1232 6676664 489
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 396 ~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
++++++|.++++| +..+++ +++..++...+..+.+..++.+.+.++
T Consensus 350 ~~la~ai~~ll~~---~~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLAN---PAEREE---LGQAARRRVLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcC---HHHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 9999999999998 433222 222222222345668888888877764
No 91
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.63 E-value=2.3e-05 Score=75.77 Aligned_cols=112 Identities=13% Similarity=0.049 Sum_probs=74.2
Q ss_pred CCccccccC-hHhhhcCCCCCCccc--c--cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHH
Q 012735 323 RGHLVKWAP-QQEVLAHPAVGAFWT--H--NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREE 397 (457)
Q Consensus 323 ~~~~~~~vp-q~~lL~~~~~~~~I~--h--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~ 397 (457)
++++.++.. -..+++.+|+ +|. + |-..++.||+.+|+|+|+.... .+.+.+++. ..|..++. -++++
T Consensus 256 ~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~-~d~~~ 327 (374)
T TIGR03088 256 LVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP-GDAVA 327 (374)
T ss_pred eEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-CCHHH
Confidence 345555544 3468888888 663 2 4457999999999999996653 355666663 56777765 58899
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 398 IEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 398 l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
++++|.+++++ +..++ ++++..++...+..+.+..++++++.+++
T Consensus 328 la~~i~~l~~~---~~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 328 LARALQPYVSD---PAARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHhC---HHHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999988 33222 22222222222456688888888877764
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.58 E-value=7.7e-05 Score=76.60 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=96.7
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhh----CCCCeEEEECCCCCCCCCCCCCCchhHHHhh-----cCCCccccccCh-
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLAN----CKLPFLWVVRPGLTRGSDCLEPLPSGFMEMV-----DGRGHLVKWAPQ- 332 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~----~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~~~~vpq- 332 (457)
..+++..|.... .+....+++++.. .+.--++.++.+. ..+.+.+.. .+++.+.+|.+.
T Consensus 517 ~~vIg~VGRL~~--~KG~~~LI~A~a~l~~~~p~~~LvIvG~G~---------~~~~L~~l~~~lgL~~~V~flG~~~dv 585 (694)
T PRK15179 517 RFTVGTVMRVDD--NKRPFLWVEAAQRFAASHPKVRFIMVGGGP---------LLESVREFAQRLGMGERILFTGLSRRV 585 (694)
T ss_pred CeEEEEEEeCCc--cCCHHHHHHHHHHHHHHCcCeEEEEEccCc---------chHHHHHHHHHcCCCCcEEEcCCcchH
Confidence 345556666553 3444555555542 2323345555432 222332221 356777788775
Q ss_pred HhhhcCCCCCCccc---ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhc
Q 012735 333 QEVLAHPAVGAFWT---HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMV 407 (457)
Q Consensus 333 ~~lL~~~~~~~~I~---hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~ 407 (457)
..+|..+++ +|. +.| .+++.||+.+|+|+|+.... ...+.+.+. ..|..++. +.+++++.+++.+++.
T Consensus 586 ~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~~~~La~aL~~ll~ 658 (694)
T PRK15179 586 GYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVTAPDVAEALARIHD 658 (694)
T ss_pred HHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCChHHHHHHHHHHHh
Confidence 358888888 664 455 47999999999999997653 355566663 56888876 5677777777777664
Q ss_pred cc-chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 408 EK-QGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 408 ~~-~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
+. ..+.+++++++... +..+.++.++..++.++
T Consensus 659 ~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 659 MCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred ChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 31 01566666554432 33557777777776653
No 93
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.53 E-value=3.5e-07 Score=71.76 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=77.3
Q ss_pred cEEEEEecccccC---CHHHHHHHHHHHhhCCC-CeEEEECCCCCCCCCCCCCCchhHHHhh-cCCCc--cccccCh-Hh
Q 012735 263 SVIYVSFGSIAAV---SEAEFLEIAWGLANCKL-PFLWVVRPGLTRGSDCLEPLPSGFMEMV-DGRGH--LVKWAPQ-QE 334 (457)
Q Consensus 263 ~vv~vs~Gs~~~~---~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~~--~~~~vpq-~~ 334 (457)
..+|||-||.... ..-.-++..+.+.+.|. +.++.++.+... .++.+.... .+... ..+|-|- .+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~-------~~d~~~~~~k~~gl~id~y~f~psl~e 76 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPF-------FGDPIDLIRKNGGLTIDGYDFSPSLTE 76 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccC-------CCCHHHhhcccCCeEEEEEecCccHHH
Confidence 4799999999861 11222346667777775 577777766311 122221111 11111 2377884 56
Q ss_pred hhcCCCCCCcccccChhHHHHHHhhCCcccccCc----cchhhHHHHHHHhhhcc
Q 012735 335 VLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC----FTDQKVNARYVSDVWKV 385 (457)
Q Consensus 335 lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~----~~DQ~~na~~v~~~lG~ 385 (457)
..+.+++ +|.|+|.||++|.|..|+|.|+++- -..|-+.|..+++. |.
T Consensus 77 ~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gy 128 (170)
T KOG3349|consen 77 DIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GY 128 (170)
T ss_pred HHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-Cc
Confidence 6767888 9999999999999999999999995 47899999999984 75
No 94
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.52 E-value=6.9e-06 Score=78.64 Aligned_cols=124 Identities=13% Similarity=0.153 Sum_probs=85.6
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChH---hhhcCCCC
Q 012735 265 IYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQ---EVLAHPAV 341 (457)
Q Consensus 265 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~---~lL~~~~~ 341 (457)
.++..|+.. +.+....++++++..+.+++++ +.+. ..+.+.+...+|+.+.+++|+. .+++.+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~iv-G~g~---------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVI-GDGP---------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEE-ECCh---------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 344567666 4456777888888877654443 3321 1233444456788999999974 47888887
Q ss_pred CCccc--ccCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 342 GAFWT--HNGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 342 ~~~I~--hgG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+|. .-|. .++.||+.+|+|+|+....+ ....+.+. +.|..++. -++++++++|.++++|
T Consensus 265 --~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~ 326 (351)
T cd03804 265 --FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKN 326 (351)
T ss_pred --EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhC
Confidence 553 3333 46789999999999986543 44556663 67887766 4789999999999998
No 95
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.51 E-value=4.3e-05 Score=71.53 Aligned_cols=328 Identities=15% Similarity=0.160 Sum_probs=179.3
Q ss_pred CCCccCHHHHHHHHHHHHHC--CCeEEEEe-CCCCCCCCCC-C-CCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchh
Q 012735 14 LPLQGHISPMLQLANILHSQ--GFTITIIH-TSFNSPNPSS-H-PHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVP 88 (457)
Q Consensus 14 ~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~-~~~~~~~~~~-~-~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (457)
.-+-|-++..++|.++|.++ ++.|++-+ ++...+.... . ..+....+|-.++
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~----------------------- 112 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP----------------------- 112 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch-----------------------
Confidence 34559999999999999999 77777755 3222211111 1 1244444452111
Q ss_pred HHHHHHHHhhccCCCCeeEEEeCCC--cchHHHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCcccc
Q 012735 89 FRDCLAKLLADVEEEPIACLISDAM--LPFTQAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPVV 166 (457)
Q Consensus 89 ~~~~l~~l~~~~~~~~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 166 (457)
..+.++++.+ +||++|.-.. .+..+.-++..|+|.+.+.--. ...
T Consensus 113 --~~v~rFl~~~---~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaRL-------------S~r--------------- 159 (419)
T COG1519 113 --IAVRRFLRKW---RPKLLIIMETELWPNLINELKRRGIPLVLVNARL-------------SDR--------------- 159 (419)
T ss_pred --HHHHHHHHhc---CCCEEEEEeccccHHHHHHHHHcCCCEEEEeeee-------------chh---------------
Confidence 1223333333 8898875443 4566677889999999863210 000
Q ss_pred CCCCCCCCCCCCCCCCCChhHHHHHHhhhh-ccccccEEEEcCchhhhHHHHHHHHhhcCCCccccCccccCCCCCCCCC
Q 012735 167 ELPPLKIKDLPVINTRDPETLYEIVNGMVD-GAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIGPFHICIPASPSSL 245 (457)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vGp~~~~~~~~~~~~ 245 (457)
.. .-++.+....+ ...+.++++..+...-+ .+ ...-..++...|-+-.+-.. ...
T Consensus 160 ----------------S~-~~y~k~~~~~~~~~~~i~li~aQse~D~~--Rf---~~LGa~~v~v~GNlKfd~~~--~~~ 215 (419)
T COG1519 160 ----------------SF-ARYAKLKFLARLLFKNIDLILAQSEEDAQ--RF---RSLGAKPVVVTGNLKFDIEP--PPQ 215 (419)
T ss_pred ----------------hh-HHHHHHHHHHHHHHHhcceeeecCHHHHH--HH---HhcCCcceEEecceeecCCC--Chh
Confidence 00 01222222222 23556666666653322 11 22112337778877765432 000
Q ss_pred ccCc-cccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCC-CeEEEECCCCCCCCCCCCCCchhHHHhhc--
Q 012735 246 LTQD-QSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKL-PFLWVVRPGLTRGSDCLEPLPSGFMEMVD-- 321 (457)
Q Consensus 246 ~~~~-~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~lp~~~~~~~~-- 321 (457)
.+.. +.+...++.. + -+.+..+|+.. ..+..-....++.+... ..++.++... +..+ .+++...
T Consensus 216 ~~~~~~~~r~~l~~~--r-~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHp-------ERf~-~v~~l~~~~ 283 (419)
T COG1519 216 LAAELAALRRQLGGH--R-PVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHP-------ERFK-AVENLLKRK 283 (419)
T ss_pred hHHHHHHHHHhcCCC--C-ceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCCh-------hhHH-HHHHHHHHc
Confidence 1101 1123333321 2 36666666543 45555556666665432 2333333321 1111 1111111
Q ss_pred ----------------CCCccccccC-hHhhhcCCCC----CCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHH
Q 012735 322 ----------------GRGHLVKWAP-QQEVLAHPAV----GAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVS 380 (457)
Q Consensus 322 ----------------~~~~~~~~vp-q~~lL~~~~~----~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~ 380 (457)
.++.+.+-+- ...++.-+++ +-++.+||+| .+|++++|+|+|.=|+...|.+.++++.
T Consensus 284 gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~ 362 (419)
T COG1519 284 GLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLL 362 (419)
T ss_pred CCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHH
Confidence 1233333333 2234444444 3366799998 6899999999999999999999999999
Q ss_pred hhhccceecCCCCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 381 DVWKVGLQLENGLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 381 ~~lG~g~~l~~~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.. |.|+.++. .+.+.+++..+++|++ +..|.+++.++-...+ .+.+...+.|.+
T Consensus 363 ~~-ga~~~v~~---~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~----------gal~r~l~~l~~ 417 (419)
T COG1519 363 QA-GAGLQVED---ADLLAKAVELLLADEDKREAYGRAGLEFLAQNR----------GALARTLEALKP 417 (419)
T ss_pred hc-CCeEEECC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh----------HHHHHHHHHhhh
Confidence 96 99998865 7889999998888732 4555555555555443 355555555544
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.50 E-value=1.6e-05 Score=77.83 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=54.3
Q ss_pred cCCCccccccChH---hhhcCCCCCCccccc---C-hhHHHHHHhhCCcccccCccchhhHHHHHHH---hhhccceecC
Q 012735 321 DGRGHLVKWAPQQ---EVLAHPAVGAFWTHN---G-WNSTLESICEGIPMICMPCFTDQKVNARYVS---DVWKVGLQLE 390 (457)
Q Consensus 321 ~~~~~~~~~vpq~---~lL~~~~~~~~I~hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~---~~lG~g~~l~ 390 (457)
.+++.+.+++|+. .+|+.+++ +|+-. | .-++.|||++|+|+|+.-..+. ....+. .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 3577888999865 47877887 55321 2 2488999999999997654321 112232 32 566654
Q ss_pred CCCCHHHHHHHHHHHhcc
Q 012735 391 NGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 391 ~~~~~~~l~~ai~~il~~ 408 (457)
.+++++++++.+++++
T Consensus 377 --~d~~~la~ai~~ll~~ 392 (419)
T cd03806 377 --STAEEYAEAIEKILSL 392 (419)
T ss_pred --CCHHHHHHHHHHHHhC
Confidence 2899999999999986
No 97
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.48 E-value=5.7e-05 Score=74.76 Aligned_cols=345 Identities=11% Similarity=0.038 Sum_probs=175.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCL 86 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
.||.+++....|++.- ..|.++|+++.=++.|.+-... ...+ .|++... +.+.-...++.+.+..+. ...
T Consensus 227 ~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~-~M~a--aG~e~l~-----d~~eLsVmG~~EVL~~l~-~l~ 296 (608)
T PRK01021 227 TSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGP-QMRA--EGFHPLF-----NMEEFQVSGFWEVLLALF-KLW 296 (608)
T ss_pred CeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccH-HHHh--CcCcccC-----ChHHhhhhhHHHHHHHHH-HHH
Confidence 5788888888788764 5678888888767777665321 1111 2433211 111112233444444332 222
Q ss_pred hhHHHHHHHHhhccCCCCeeEEEe-CCC--cchHHHHHhHcCC--CeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCC
Q 012735 87 VPFRDCLAKLLADVEEEPIACLIS-DAM--LPFTQAVADSLKL--PRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKG 161 (457)
Q Consensus 87 ~~~~~~l~~l~~~~~~~~pDlvi~-D~~--~~~~~~~A~~l~i--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 161 (457)
..++++.+.+.++ +||++|. |.= ..-....+++.|+ |++.+.+...
T Consensus 297 ~~~~~l~~~i~~~----kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqV------------------------- 347 (608)
T PRK01021 297 YRYRKLYKTILKT----NPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSI------------------------- 347 (608)
T ss_pred HHHHHHHHHHHhc----CCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECccc-------------------------
Confidence 3344455555554 9999985 642 2334556667786 9888644210
Q ss_pred CccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccC-ccccCCCC
Q 012735 162 QEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIG-PFHICIPA 240 (457)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vG-p~~~~~~~ 240 (457)
..|+. .+.+.+.+.... +..- ..+|.+.+ ++ .+.+..||| |+...-+
T Consensus 348 -------WAWR~--------~Rikki~k~vD~-----------ll~I-fPFE~~~y---~~-~gv~v~yVGHPL~d~i~- 395 (608)
T PRK01021 348 -------WAWRP--------KRKTILEKYLDL-----------LLLI-LPFEQNLF---KD-SPLRTVYLGHPLVETIS- 395 (608)
T ss_pred -------eeeCc--------chHHHHHHHhhh-----------heec-CccCHHHH---Hh-cCCCeEEECCcHHhhcc-
Confidence 01111 111222222222 1112 22344433 22 367799999 6554421
Q ss_pred CCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHh--hC--CCCeEEEECCCCCCCCCCCCCCchhH
Q 012735 241 SPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLA--NC--KLPFLWVVRPGLTRGSDCLEPLPSGF 316 (457)
Q Consensus 241 ~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~i~~~~~~~~~~~~~~~~lp~~~ 316 (457)
..+..++..+-+.-.+++++|-+-.||-...=...+..++++.+ .. +.++++...... ..+.+
T Consensus 396 ----~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~---------~~~~i 462 (608)
T PRK01021 396 ----SFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK---------YDHLI 462 (608)
T ss_pred ----cCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---------hHHHH
Confidence 11122222333333346689999999988633455556777766 33 334444332211 11222
Q ss_pred HHhhcC-CCcccccc-C--hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCc-cchhhHHHHHHHh----------
Q 012735 317 MEMVDG-RGHLVKWA-P--QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC-FTDQKVNARYVSD---------- 381 (457)
Q Consensus 317 ~~~~~~-~~~~~~~v-p--q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~-~~DQ~~na~~v~~---------- 381 (457)
.+...+ ...-...+ . ..++++.+|+ .+.-+|. .++|++..|+|||++=- ..=-...++++.+
T Consensus 463 ~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpN 539 (608)
T PRK01021 463 LEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPN 539 (608)
T ss_pred HHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhH
Confidence 222211 10000122 1 2578888888 8888886 56899999999988532 2223344555444
Q ss_pred -h--hccceecC--C-CCCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 382 -V--WKVGLQLE--N-GLKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 382 -~--lG~g~~l~--~-~~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
- ..+-.++- . +.|++.|.+++ ++|.|.+ +++.++..+++++.+. +...+.++.+..+
T Consensus 540 IIagr~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg-------~~~~~~~~~~~~~ 603 (608)
T PRK01021 540 IILGSTIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN-------ESASTMKECLSLI 603 (608)
T ss_pred HhcCCCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc-------CCCCCHHHHHHHH
Confidence 0 02222222 2 57899999997 7787732 3455555555555553 3344445554544
No 98
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.47 E-value=4.2e-06 Score=80.11 Aligned_cols=130 Identities=16% Similarity=0.148 Sum_probs=80.7
Q ss_pred CcEEEEEecccc--c-CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhh--cCCCccccccC---hH
Q 012735 262 KSVIYVSFGSIA--A-VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMV--DGRGHLVKWAP---QQ 333 (457)
Q Consensus 262 ~~vv~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~~~~~~vp---q~ 333 (457)
++.|++++=... . ...+.+..+++++...+.++++..+... .+ ...+-+.+.+.. .+|+.+.+-++ ..
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~---~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AG---SRIINEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CC---chHHHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 467778775443 2 4567889999999887666666654321 00 001112222222 35677776555 45
Q ss_pred hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 334 EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 334 ~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
.+++++++ +|+.++.|. .||...|+|.|.+- + -+...++ |..+.+- ..++++|.++++++++
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~----R~e~~~~-g~nvl~v-g~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T----RQKGRLR-ADSVIDV-DPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C----Cchhhhh-cCeEEEe-CCCHHHHHHHHHHHhC
Confidence 68888888 998886665 99999999999774 2 1111122 4333211 3588999999999554
No 99
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.41 E-value=2.7e-05 Score=77.43 Aligned_cols=166 Identities=12% Similarity=0.134 Sum_probs=90.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhC---CCCeEEEECCCCCCCCCCCCCCchhH---HHhhcCCCcc-ccccCh--H
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLWVVRPGLTRGSDCLEPLPSGF---MEMVDGRGHL-VKWAPQ--Q 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~---~~~~~~~~~~-~~~vpq--~ 333 (457)
..+++..|... +.+.+..++++++.+ +.++++. +.+. ....+.+ .+..+.++.+ ..|-.. .
T Consensus 282 ~~~i~~vGRl~--~~KG~~~li~a~~~l~~~~~~lviv-G~g~-------~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~ 351 (466)
T PRK00654 282 APLFAMVSRLT--EQKGLDLVLEALPELLEQGGQLVLL-GTGD-------PELEEAFRALAARYPGKVGVQIGYDEALAH 351 (466)
T ss_pred CcEEEEeeccc--cccChHHHHHHHHHHHhcCCEEEEE-ecCc-------HHHHHHHHHHHHHCCCcEEEEEeCCHHHHH
Confidence 44666667766 345555666666543 4444443 3321 0011222 2233344443 355322 2
Q ss_pred hhhcCCCCCCcccc---cCh-hHHHHHHhhCCcccccCcc--chhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 334 EVLAHPAVGAFWTH---NGW-NSTLESICEGIPMICMPCF--TDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 334 ~lL~~~~~~~~I~h---gG~-~s~~eal~~gvP~v~~P~~--~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
.+++.+|+ +|.- -|. .+.+||+.+|+|.|+.... .|...+...-... +-|..++. -+++++.++|.++++
T Consensus 352 ~~~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~ 427 (466)
T PRK00654 352 RIYAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALE 427 (466)
T ss_pred HHHhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHH
Confidence 47888887 7743 344 4889999999999987543 2221111111232 67887776 589999999999886
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 408 EKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 408 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
..+.+..+ ++++... ..+..+.++.+++.++..++
T Consensus 428 ~~~~~~~~---~~~~~~~---~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 428 LYRQPPLW---RALQRQA---MAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred HhcCHHHH---HHHHHHH---hccCCChHHHHHHHHHHHHH
Confidence 31102221 2222222 12567788888888877765
No 100
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.41 E-value=0.00012 Score=69.99 Aligned_cols=78 Identities=18% Similarity=0.114 Sum_probs=55.3
Q ss_pred CCCccccccCh-HhhhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHH
Q 012735 322 GRGHLVKWAPQ-QEVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKRE 396 (457)
Q Consensus 322 ~~~~~~~~vpq-~~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 396 (457)
+++.+.++..+ .+++..+++ +|+- |-..++.|||.+|+|+|+....+ ....+.+ +.|..... -+++
T Consensus 249 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~~ 319 (358)
T cd03812 249 DKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESPE 319 (358)
T ss_pred CcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCHH
Confidence 45666776444 468888887 6643 44679999999999999866543 3344444 44544433 3689
Q ss_pred HHHHHHHHHhcc
Q 012735 397 EIEKTIRRVMVE 408 (457)
Q Consensus 397 ~l~~ai~~il~~ 408 (457)
+++++|.++++|
T Consensus 320 ~~a~~i~~l~~~ 331 (358)
T cd03812 320 IWAEEILKLKSE 331 (358)
T ss_pred HHHHHHHHHHhC
Confidence 999999999999
No 101
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.41 E-value=6e-05 Score=72.77 Aligned_cols=110 Identities=13% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCCcccccc--ChH---hhhcCCCCCCccccc---C-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCC
Q 012735 322 GRGHLVKWA--PQQ---EVLAHPAVGAFWTHN---G-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENG 392 (457)
Q Consensus 322 ~~~~~~~~v--pq~---~lL~~~~~~~~I~hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~ 392 (457)
+++.+..+. ++. ++++.+++ |+.-+ | ..++.||+.+|+|+|+.... .....+... ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 455666665 432 57878888 77543 2 35999999999999987643 233445553 5666553
Q ss_pred CCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 393 LKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 393 ~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+.+.++.+|.+++++.+ ++.+.+++++.. .+..+.+..++++++.+++
T Consensus 323 -~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~-------~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -TVEEAAVRILYLLRDPELRRKMGANAREHV-------RENFLITRHLKDYLYLISK 371 (372)
T ss_pred -CcHHHHHHHHHHHcCHHHHHHHHHHHHHHH-------HHHcCHHHHHHHHHHHHHh
Confidence 46778889999998821 233334444322 1345578888888887764
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.30 E-value=0.00017 Score=72.07 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=91.2
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhh---CCCCeEEEECCCCCCCCCCCCCCchhH---HHhhcCCCccccccChH---
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLAN---CKLPFLWVVRPGLTRGSDCLEPLPSGF---MEMVDGRGHLVKWAPQQ--- 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~---~~~~~~~~~~~~~vpq~--- 333 (457)
..+++..|.... .+.+..+++++.. .+.+++ .++.+. ....+.+ .+..+.++.+....+..
T Consensus 291 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lv-i~G~g~-------~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~ 360 (473)
T TIGR02095 291 VPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLV-VLGTGD-------PELEEALRELAERYPGNVRVIIGYDEALAH 360 (473)
T ss_pred CCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEE-EECCCC-------HHHHHHHHHHHHHCCCcEEEEEcCCHHHHH
Confidence 345666677764 3445555555544 333333 333321 0111222 22334455555444543
Q ss_pred hhhcCCCCCCcccc---cChh-HHHHHHhhCCcccccCccchhhHHHHHHHh------hhccceecCCCCCHHHHHHHHH
Q 012735 334 EVLAHPAVGAFWTH---NGWN-STLESICEGIPMICMPCFTDQKVNARYVSD------VWKVGLQLENGLKREEIEKTIR 403 (457)
Q Consensus 334 ~lL~~~~~~~~I~h---gG~~-s~~eal~~gvP~v~~P~~~DQ~~na~~v~~------~lG~g~~l~~~~~~~~l~~ai~ 403 (457)
.+++.+|+ +|.- -|.| +.+||+.+|+|.|+....+ ...-+.+ . +.|..++. -+++++.++|.
T Consensus 361 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~-~~G~l~~~-~d~~~la~~i~ 432 (473)
T TIGR02095 361 LIYAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAES-GTGFLFEE-YDPGALLAALS 432 (473)
T ss_pred HHHHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCC-CceEEeCC-CCHHHHHHHHH
Confidence 47877887 7643 2443 7899999999999866532 2222222 1 67777766 58899999999
Q ss_pred HHhc----ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 404 RVMV----EKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 404 ~il~----~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+++. + +..++ ++++.. ..+..|.++.+++.++..++
T Consensus 433 ~~l~~~~~~---~~~~~---~~~~~~---~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 433 RALRLYRQD---PSLWE---ALQKNA---MSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHhcC---HHHHH---HHHHHH---hccCCCcHHHHHHHHHHHHh
Confidence 9887 4 33222 222222 22567788888888887765
No 103
>PLN02316 synthase/transferase
Probab=98.30 E-value=0.00042 Score=73.45 Aligned_cols=118 Identities=9% Similarity=-0.008 Sum_probs=73.6
Q ss_pred CCCccccccChH---hhhcCCCCCCccccc---C-hhHHHHHHhhCCcccccCcc--chhhHHH-------HHHHhhhcc
Q 012735 322 GRGHLVKWAPQQ---EVLAHPAVGAFWTHN---G-WNSTLESICEGIPMICMPCF--TDQKVNA-------RYVSDVWKV 385 (457)
Q Consensus 322 ~~~~~~~~vpq~---~lL~~~~~~~~I~hg---G-~~s~~eal~~gvP~v~~P~~--~DQ~~na-------~~v~~~lG~ 385 (457)
+++.+....+.. .+++.+|+ |+.-+ | ..+.+|||++|+|.|+.... .|..... +..... +-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 344554334432 57877777 77532 2 35899999999988876543 2222111 101111 45
Q ss_pred ceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 386 GLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 386 g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
|..++. .+++.|..+|.+++.+ |......+++..++.+....|.++.++..++..++
T Consensus 977 Gflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 777766 6899999999999975 33333444555555555667788888888877765
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=98.30 E-value=0.00022 Score=70.33 Aligned_cols=112 Identities=17% Similarity=0.115 Sum_probs=70.3
Q ss_pred cCCCccccccChHh---hhcCCCCCCccc---ccChh-HHHHHHhhCCcccccCccchhhHHHHHHHh-hhc-cceecCC
Q 012735 321 DGRGHLVKWAPQQE---VLAHPAVGAFWT---HNGWN-STLESICEGIPMICMPCFTDQKVNARYVSD-VWK-VGLQLEN 391 (457)
Q Consensus 321 ~~~~~~~~~vpq~~---lL~~~~~~~~I~---hgG~~-s~~eal~~gvP~v~~P~~~DQ~~na~~v~~-~lG-~g~~l~~ 391 (457)
.+++.+..++|+.+ +|+.+++ +|+ +-|.| ++.||+++|+|+|+....+-- ...+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 35677889998654 6777777 663 23333 799999999999998754310 011111 001 23322
Q ss_pred CCCHHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 392 GLKREEIEKTIRRVMVEK-Q-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 392 ~~~~~~l~~ai~~il~~~-~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
-++++++++|.+++++. + +..+.+++++..++ .|.++..+++.+.+++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~--------FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRANR--------FSEQRFNEDFKDAIRP 456 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--------cCHHHHHHHHHHHHHH
Confidence 28999999999999842 1 33455555544433 5578888888777764
No 105
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.26 E-value=0.00027 Score=65.55 Aligned_cols=347 Identities=14% Similarity=0.122 Sum_probs=184.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCL 86 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
+||.+++.-..|++. .-.|.++|.++=-+|.|++-.. ....+ .|++-. ++...-...++.+.+..+.+...
T Consensus 2 ~ki~i~AGE~SGDll-Ga~LikaLk~~~~~~efvGvgG-~~m~a--eG~~sl-----~~~~elsvmGf~EVL~~lp~llk 72 (381)
T COG0763 2 LKIALSAGEASGDLL-GAGLIKALKARYPDVEFVGVGG-EKMEA--EGLESL-----FDMEELSVMGFVEVLGRLPRLLK 72 (381)
T ss_pred ceEEEEecccchhhH-HHHHHHHHHhhCCCeEEEEecc-HHHHh--ccCccc-----cCHHHHHHhhHHHHHHHHHHHHH
Confidence 689999988889865 4568888988733888877642 22222 232111 11111222334444443333222
Q ss_pred hhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhH---cC--CCeEEEec-chHHHHHHHHhhhhhhhcCCCCCCCCC
Q 012735 87 VPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADS---LK--LPRIVLRT-GGASSFVVFAAFPLLKERGYFPIQDSK 160 (457)
Q Consensus 87 ~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~---l~--iP~v~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~ 160 (457)
..+++++.++.. +||++|.=-.-.+...+|.+ .+ +|.|.+.. +.+.
T Consensus 73 -~~~~~~~~i~~~----kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA----------------------- 124 (381)
T COG0763 73 -IRRELVRYILAN----KPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA----------------------- 124 (381)
T ss_pred -HHHHHHHHHHhc----CCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee-----------------------
Confidence 233456666655 99999843234445555554 45 99888543 2111
Q ss_pred CCccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccC-ccccCCC
Q 012735 161 GQEPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIG-PFHICIP 239 (457)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vG-p~~~~~~ 239 (457)
|+. .+...+.+. +|. +. ...-+|...+ .. +..|..||| |+....+
T Consensus 125 ----------Wr~--------~Ra~~i~~~----------~D~-lL-ailPFE~~~y---~k-~g~~~~yVGHpl~d~i~ 170 (381)
T COG0763 125 ----------WRP--------KRAVKIAKY----------VDH-LL-AILPFEPAFY---DK-FGLPCTYVGHPLADEIP 170 (381)
T ss_pred ----------ech--------hhHHHHHHH----------hhH-ee-eecCCCHHHH---Hh-cCCCeEEeCChhhhhcc
Confidence 000 111111222 221 11 1122333322 22 356688999 5544332
Q ss_pred CCCCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhh----C-CCCeEEEECCCCCCCCCCCCCCch
Q 012735 240 ASPSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLAN----C-KLPFLWVVRPGLTRGSDCLEPLPS 314 (457)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~lp~ 314 (457)
..+..+.+.+-+....+++++.+-.||-...-...+..+.++... . +.++++-+.... . +
T Consensus 171 -----~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~------~----~ 235 (381)
T COG0763 171 -----LLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK------Y----R 235 (381)
T ss_pred -----ccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH------H----H
Confidence 222333344445445577899999999886222222333333332 2 456665554321 0 1
Q ss_pred hHHH-hhcCCC-ccccccC-h--HhhhcCCCCCCcccccChhHHHHHHhhCCcccccCcc-chhhHHHHHHHhhhccce-
Q 012735 315 GFME-MVDGRG-HLVKWAP-Q--QEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCF-TDQKVNARYVSDVWKVGL- 387 (457)
Q Consensus 315 ~~~~-~~~~~~-~~~~~vp-q--~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~-~DQ~~na~~v~~~lG~g~- 387 (457)
...+ ....+. ...-+++ + .+.+..+|+ .+.-+|- -++|++.+|+|||+.=-. .=-...+.+..+ +...-
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk-~~yisL 311 (381)
T COG0763 236 RIIEEALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK-LPYVSL 311 (381)
T ss_pred HHHHHHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc-CCcccc
Confidence 1111 111111 1222222 2 236766776 7777776 467999999999875321 222334445444 23211
Q ss_pred -------ec----CC-CCCHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 388 -------QL----EN-GLKREEIEKTIRRVMVEK-QGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 388 -------~l----~~-~~~~~~l~~ai~~il~~~-~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
.+ -. ..+++.|.+++..++.|. ++..+++..++++..++ ..+.++.+++.+++.+.
T Consensus 312 pNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 312 PNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred hHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 11 11 588999999999999995 34577888888888887 66688888888887764
No 106
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.25 E-value=0.0002 Score=71.72 Aligned_cols=165 Identities=12% Similarity=0.055 Sum_probs=88.3
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhh---CCCCeEEEECCCCCCCCCCCCCCchhHH---HhhcCCCccccccChH---
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLAN---CKLPFLWVVRPGLTRGSDCLEPLPSGFM---EMVDGRGHLVKWAPQQ--- 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~i~~~~~~~~~~~~~~~~lp~~~~---~~~~~~~~~~~~vpq~--- 333 (457)
..+++..|.... .+.+..+++++.. .+.++++ ++.+. ..+.+.+. ++..+|+.+....++.
T Consensus 296 ~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi-~G~g~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 365 (476)
T cd03791 296 APLFGFVGRLTE--QKGIDLLLEALPELLELGGQLVI-LGSGD-------PEYEEALRELAARYPGRVAVLIGYDEALAH 365 (476)
T ss_pred CCEEEEEeeccc--cccHHHHHHHHHHHHHcCcEEEE-EecCC-------HHHHHHHHHHHHhCCCcEEEEEeCCHHHHH
Confidence 445666777763 3445555555543 3333333 33221 11112222 2223565554333332
Q ss_pred hhhcCCCCCCccccc---Ch-hHHHHHHhhCCcccccCccc--hhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 334 EVLAHPAVGAFWTHN---GW-NSTLESICEGIPMICMPCFT--DQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 334 ~lL~~~~~~~~I~hg---G~-~s~~eal~~gvP~v~~P~~~--DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
.+++.+++ ++.-. |. .+.+||+.+|+|+|+....+ |........... |.|..++. -+++++.+++.++++
T Consensus 366 ~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~-~~~~~l~~~i~~~l~ 441 (476)
T cd03791 366 LIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG-YNADALLAALRRALA 441 (476)
T ss_pred HHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC-CCHHHHHHHHHHHHH
Confidence 47777787 66431 22 47899999999999766532 211111111132 57888876 579999999999986
Q ss_pred ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 408 EKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 408 ~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
..+ -++...++++... ....+.+..+++.++.++
T Consensus 442 ~~~---~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 442 LYR---DPEAWRKLQRNAM---AQDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHc---CHHHHHHHHHHHh---ccCCChHHHHHHHHHHHh
Confidence 411 1222222333222 244677888888877654
No 107
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.21 E-value=0.00028 Score=66.91 Aligned_cols=337 Identities=15% Similarity=0.106 Sum_probs=169.8
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchh
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVP 88 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (457)
|++++.-..|+.. ...|.++|.+++=++.|.+-... ...+ .|++...-. ..-...++.+.+..+.. ....
T Consensus 1 I~i~AGE~SGD~~-ga~Li~~Lk~~~p~~~~~GvGG~-~M~~--~G~~~l~d~-----~~lsvmG~~Evl~~l~~-~~~~ 70 (373)
T PF02684_consen 1 IFISAGEASGDLH-GARLIRALKARDPDIEFYGVGGP-RMQA--AGVESLFDM-----EELSVMGFVEVLKKLPK-LKRL 70 (373)
T ss_pred CEEEeeCccHHHH-HHHHHHHHHhhCCCcEEEEEech-HHHh--CCCceecch-----HHhhhccHHHHHHHHHH-HHHH
Confidence 3455555667755 45789999998877777665321 2222 344332211 11122334444443322 2233
Q ss_pred HHHHHHHHhhccCCCCeeEEE-eCCC--cchHHHHHhHcCCC--eEEEec-chHHHHHHHHhhhhhhhcCCCCCCCCCCC
Q 012735 89 FRDCLAKLLADVEEEPIACLI-SDAM--LPFTQAVADSLKLP--RIVLRT-GGASSFVVFAAFPLLKERGYFPIQDSKGQ 162 (457)
Q Consensus 89 ~~~~l~~l~~~~~~~~pDlvi-~D~~--~~~~~~~A~~l~iP--~v~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 162 (457)
++++.+.+.+. +||++| .|+- ..-..-.+++.|+| ++.+.+ +.+
T Consensus 71 ~~~~~~~~~~~----~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvW-------------------------- 120 (373)
T PF02684_consen 71 FRKLVERIKEE----KPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVW-------------------------- 120 (373)
T ss_pred HHHHHHHHHHc----CCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCcee--------------------------
Confidence 34455555554 999987 5542 23333445567888 666433 211
Q ss_pred ccccCCCCCCCCCCCCCCCCCChhHHHHHHhhhhccccccEEEEcCchhhhHHHHHHHHhhcCCCccccC-ccccCCCCC
Q 012735 163 EPVVELPPLKIKDLPVINTRDPETLYEIVNGMVDGAKVSSGIIWNTFEDLEESALATLRQQFSIPIFPIG-PFHICIPAS 241 (457)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~p~~~vG-p~~~~~~~~ 241 (457)
.|+. .+.+.+.+.. |. +..-+ -+|.+.+ .+ ...+..||| |+...-..
T Consensus 121 -------AWr~--------~R~~~i~~~~----------D~-ll~if-PFE~~~y---~~-~g~~~~~VGHPl~d~~~~- 168 (373)
T PF02684_consen 121 -------AWRP--------GRAKKIKKYV----------DH-LLVIF-PFEPEFY---KK-HGVPVTYVGHPLLDEVKP- 168 (373)
T ss_pred -------eeCc--------cHHHHHHHHH----------hh-eeECC-cccHHHH---hc-cCCCeEEECCcchhhhcc-
Confidence 1110 1111111211 22 22222 2333322 22 246699999 55544322
Q ss_pred CCCCccCccccccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhh---C--CCCeEEEECCCCCCCCCCCCCCchhH
Q 012735 242 PSSLLTQDQSCIAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLAN---C--KLPFLWVVRPGLTRGSDCLEPLPSGF 316 (457)
Q Consensus 242 ~~~~~~~~~~l~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~i~~~~~~~~~~~~~~~~lp~~~ 316 (457)
.....+..+.+ -.+++++|.+-.||-..--...+..++++.+. . +.++++...... ..+-+
T Consensus 169 ----~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~---------~~~~i 234 (373)
T PF02684_consen 169 ----EPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEV---------HEELI 234 (373)
T ss_pred ----CCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHH---------HHHHH
Confidence 11122222222 23467899999999886223344445555443 2 234444332211 11112
Q ss_pred HHhh---cCCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCc-cchhhHHHHHHHhhhcc------
Q 012735 317 MEMV---DGRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC-FTDQKVNARYVSDVWKV------ 385 (457)
Q Consensus 317 ~~~~---~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~-~~DQ~~na~~v~~~lG~------ 385 (457)
.+.. ..++.+. ..-.-.+++..+++ .+.-+|- .++|+...|+|||++=- ..=....|+++.+ ...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Ni 310 (373)
T PF02684_consen 235 EEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNI 310 (373)
T ss_pred HHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhh
Confidence 1111 1112221 11124467877887 7777765 57899999999987643 2334455666654 232
Q ss_pred --c----eecCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHH
Q 012735 386 --G----LQLEN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFES 438 (457)
Q Consensus 386 --g----~~l~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 438 (457)
| -.+-. ..|++.|.+++..++.| +..++..+...+.+++..+.+.++..+
T Consensus 311 ia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (373)
T PF02684_consen 311 IAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRAA 367 (373)
T ss_pred hcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHHH
Confidence 1 11112 58999999999999999 555555555555555555566555443
No 108
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.19 E-value=1.2e-05 Score=76.25 Aligned_cols=158 Identities=13% Similarity=0.177 Sum_probs=85.8
Q ss_pred CCCcEEEEEecccccCC-H---HHHHHHHHHHhhC-CCCeEEEECCCCCCCCCCCCCCchhHHHhhc--CCCccccccC-
Q 012735 260 APKSVIYVSFGSIAAVS-E---AEFLEIAWGLANC-KLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD--GRGHLVKWAP- 331 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~~~vp- 331 (457)
.+++.|++++=...... + ..+..+++++... +..+||.+.... .....+.+... +|+++.+-++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p--------~~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNP--------RGSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-H--------HHHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCc--------hHHHHHHHHhcccCCEEEECCCCH
Confidence 46688999984444433 3 3444566666655 667888886321 01122222222 4677776665
Q ss_pred --hHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhccc
Q 012735 332 --QQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEK 409 (457)
Q Consensus 332 --q~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~ 409 (457)
...+|+++++ +|+..| |-.-||...|+|.|.+=..++-+. ... .|..+.. ..++++|.+++++++.+
T Consensus 250 ~~~l~ll~~a~~--vvgdSs-GI~eEa~~lg~P~v~iR~~geRqe----~r~-~~~nvlv--~~~~~~I~~ai~~~l~~- 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS-GIQEEAPSLGKPVVNIRDSGERQE----GRE-RGSNVLV--GTDPEAIIQAIEKALSD- 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH-HHHHHGGGGT--EEECSSS-S-HH----HHH-TTSEEEE--TSSHHHHHHHHHHHHH--
T ss_pred HHHHHHHhcceE--EEEcCc-cHHHHHHHhCCeEEEecCCCCCHH----HHh-hcceEEe--CCCHHHHHHHHHHHHhC-
Confidence 4568889999 999999 555599999999999933222221 112 2555443 26899999999999987
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 410 QGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 410 ~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
....++...... ..+...+.+.+++.|
T Consensus 319 --~~~~~~~~~~~n--------pYgdG~as~rI~~~L 345 (346)
T PF02350_consen 319 --KDFYRKLKNRPN--------PYGDGNASERIVEIL 345 (346)
T ss_dssp --HHHHHHHHCS----------TT-SS-HHHHHHHHH
T ss_pred --hHHHHhhccCCC--------CCCCCcHHHHHHHhh
Confidence 454444443222 233444555555544
No 109
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.19 E-value=0.0016 Score=63.44 Aligned_cols=153 Identities=7% Similarity=-0.012 Sum_probs=84.4
Q ss_pred EEEEecccccCCHHHHHHHHHHHhhCCCCe-EEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccC-h---HhhhcCC
Q 012735 265 IYVSFGSIAAVSEAEFLEIAWGLANCKLPF-LWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAP-Q---QEVLAHP 339 (457)
Q Consensus 265 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-q---~~lL~~~ 339 (457)
+++..|.....+.+.+..+++|+...+.++ ++.++.+. ...++ ++....+.. + .++++.+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-------~~~~~--------~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-------PFTAG--------NVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-------ccccc--------ceEEecCcCCHHHHHHHHHhC
Confidence 344455433223455677889998775444 44444321 11112 223344442 2 3456667
Q ss_pred CCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchHHHH
Q 012735 340 AVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEIR 415 (457)
Q Consensus 340 ~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~ 415 (457)
|+ ||.- |--.++.||+++|+|+|+....+ ..+.+ .+ +-|..++. -++++|+++++..+.+ ..++
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv-~~-~~G~lv~~-~d~~~La~~~~~~~~~---~~~~ 375 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVL-QK-SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFG 375 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhE-eC-CcEEEECC-CCHHHHHhccCHHHHH---Hhhh
Confidence 76 6653 33468999999999999998764 22333 33 56887776 4788888754322222 1121
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 416 SRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 416 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+..++.++.. .+..+.+.-+++.++..++
T Consensus 376 ~~~~~~r~~~----~~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 376 TTLAEFSQRS----RAAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred hHHHHHHHHH----HHhCCHHHHHHHHHHHHHh
Confidence 1111122222 2456678888888877654
No 110
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.18 E-value=0.0024 Score=61.63 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=68.9
Q ss_pred CCCccccccChHh---hhcCCCCCCcc------cccCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC
Q 012735 322 GRGHLVKWAPQQE---VLAHPAVGAFW------THNGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN 391 (457)
Q Consensus 322 ~~~~~~~~vpq~~---lL~~~~~~~~I------~hgG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~ 391 (457)
+|+.+.+++|+.+ .|+++++..+- +.++. +.+.|+|++|+|+|..+. ...++.. + |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC
Confidence 6778899999655 67788873321 22333 469999999999998763 2223332 3 333322
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 392 GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 392 ~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
-+++++.++|.+++.+.....++++ ++ +. +..+.+..++.+++.+++.
T Consensus 325 -~d~~~~~~ai~~~l~~~~~~~~~~~-~~----~~----~~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 325 -DDPEEFVAAIEKALLEDGPARERRR-LR----LA----AQNSWDARAAEMLEALQEN 372 (373)
T ss_pred -CCHHHHHHHHHHHHhcCCchHHHHH-HH----HH----HHCCHHHHHHHHHHHHHhc
Confidence 3899999999998765221122221 11 22 3466888888888777764
No 111
>PLN02501 digalactosyldiacylglycerol synthase
Probab=98.16 E-value=0.00025 Score=71.15 Aligned_cols=148 Identities=13% Similarity=0.061 Sum_probs=84.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhC---CCCe-EEEECCCCCCCCCCCCCCchhHHHhhcC---CCccccccChH-h
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPF-LWVVRPGLTRGSDCLEPLPSGFMEMVDG---RGHLVKWAPQQ-E 334 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~~~---~~~~~~~vpq~-~ 334 (457)
.++|+ |... ..+.+..++++++.. ...+ +++++.+. .-+.+...... ++.+.++.++. +
T Consensus 548 giLfV--GRLa--~EKGld~LLeAla~L~~~~pnvrLvIVGDGP---------~reeLe~la~eLgL~V~FLG~~dd~~~ 614 (794)
T PLN02501 548 GAYFL--GKMV--WAKGYRELIDLLAKHKNELDGFNLDVFGNGE---------DAHEVQRAAKRLDLNLNFLKGRDHADD 614 (794)
T ss_pred ceEEE--Eccc--ccCCHHHHHHHHHHHHhhCCCeEEEEEcCCc---------cHHHHHHHHHHcCCEEEecCCCCCHHH
Confidence 35554 4444 566677777777642 1123 44455442 11233222221 24445666654 4
Q ss_pred hhcCCCCCCccccc---C-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccc
Q 012735 335 VLAHPAVGAFWTHN---G-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQ 410 (457)
Q Consensus 335 lL~~~~~~~~I~hg---G-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~ 410 (457)
+++.+++ ||.-+ | ..++.||+++|+|+|+....+... +.. |.+..+. -+.+++.++|.++|.+
T Consensus 615 lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~--~D~EafAeAI~~LLsd-- 681 (794)
T PLN02501 615 SLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY--KTSEDFVAKVKEALAN-- 681 (794)
T ss_pred HHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec--CCHHHHHHHHHHHHhC--
Confidence 8888887 77532 2 468999999999999988765321 222 3322232 3789999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 411 GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 411 ~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
+.-+...++ + ..-+.+...+.+++.-
T Consensus 682 -~~~rl~~~a-----~----~~~SWeAaadrLle~~ 707 (794)
T PLN02501 682 -EPQPLTPEQ-----R----YNLSWEAATQRFMEYS 707 (794)
T ss_pred -chhhhHHHH-----H----hhCCHHHHHHHHHHhh
Confidence 332222211 1 1345666666666654
No 112
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.10 E-value=7e-05 Score=72.37 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=94.2
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhc------CCCccccccChH
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD------GRGHLVKWAPQQ 333 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~------~~~~~~~~vpq~ 333 (457)
+++.++|.||.......++.+....+.|+..+...+|...... .-.+++.+++. +++.+..+.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~--------~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPA--------SGEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETST--------THHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCH--------HHHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 3567999999999999999999999999999888888876432 01134433332 455566666654
Q ss_pred h---hhcCCCCCCcc---cccChhHHHHHHhhCCcccccCccch-hhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 334 E---VLAHPAVGAFW---THNGWNSTLESICEGIPMICMPCFTD-QKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 334 ~---lL~~~~~~~~I---~hgG~~s~~eal~~gvP~v~~P~~~D-Q~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
+ .+..+|+ ++ ..+|.+|++|||+.|||+|.+|--.= ...-+..+.. +|+.-.+.. +.++-.+.--++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA~--s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIAD--SEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-S--SHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcCC--CHHHHHHHHHHHh
Confidence 3 4455665 43 56788999999999999999995432 2333445556 688765544 5555444444666
Q ss_pred cccchHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 407 VEKQGEEIRSRI-FRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 407 ~~~~~~~~~~~a-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+| ..++++. +++++...+ .........+..+++.++.+
T Consensus 429 ~D---~~~l~~lR~~Lr~~~~~--SpLfd~~~~ar~lE~a~~~m 467 (468)
T PF13844_consen 429 TD---PERLRALRAKLRDRRSK--SPLFDPKRFARNLEAAYRQM 467 (468)
T ss_dssp H----HHHHHHHHHHHHHHHHH--SGGG-HHHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHHHHHHhh--CCCCCHHHHHHHHHHHHHHh
Confidence 66 3333222 222222221 13455777788887777653
No 113
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=0.00014 Score=67.66 Aligned_cols=162 Identities=15% Similarity=0.136 Sum_probs=101.6
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhC---CCCeEEEECCCCCCCCCCCCCCchhHHHhhc--CCCccc---cccCh
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD--GRGHLV---KWAPQ 332 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~--~~~~~~---~~vpq 332 (457)
.++.|.+|+=-..... +.++.+.+++.+. ...+.++++.... ..+-+-..+++. +|+.+. +|.+.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~------~~v~e~~~~~L~~~~~v~li~pl~~~~f 275 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPR------PRVRELVLKRLKNVERVKLIDPLGYLDF 275 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCC------hhhhHHHHHHhCCCCcEEEeCCcchHHH
Confidence 4468888864444333 4555566655431 2355666654421 011111123444 346664 67778
Q ss_pred HhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchH
Q 012735 333 QEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGE 412 (457)
Q Consensus 333 ~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~ 412 (457)
..++.++.+ ++|-.|. -.-||-..|+|.+++-...+++. +++. |.-+.+. .+.+.|.+++..++++ +
T Consensus 276 ~~L~~~a~~--iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lvg--~~~~~i~~~~~~ll~~---~ 342 (383)
T COG0381 276 HNLMKNAFL--ILTDSGG-IQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILVG--TDEENILDAATELLED---E 342 (383)
T ss_pred HHHHHhceE--EEecCCc-hhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEeC--ccHHHHHHHHHHHhhC---h
Confidence 889988888 9988875 56799999999999999999998 3332 5544443 4779999999999999 6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 413 EIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 413 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
+..++-+....-+. ..++-++|++.|.++.
T Consensus 343 ~~~~~m~~~~npYg--------dg~as~rIv~~l~~~~ 372 (383)
T COG0381 343 EFYERMSNAKNPYG--------DGNASERIVEILLNYF 372 (383)
T ss_pred HHHHHHhcccCCCc--------CcchHHHHHHHHHHHh
Confidence 66655544444433 3335555555555544
No 114
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.03 E-value=0.00018 Score=69.60 Aligned_cols=115 Identities=14% Similarity=0.187 Sum_probs=80.3
Q ss_pred hcCCCccccccChHh---hhcCCCCCCcccc----cCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC
Q 012735 320 VDGRGHLVKWAPQQE---VLAHPAVGAFWTH----NGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN 391 (457)
Q Consensus 320 ~~~~~~~~~~vpq~~---lL~~~~~~~~I~h----gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~ 391 (457)
...++.+.+++|+.+ +++.+++ +|.- .|. .++.||+++|+|+|+.... .+.+.+.+. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 345667788998654 6888888 6653 333 5788999999999997763 345566663 56775543
Q ss_pred CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 392 GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 392 ~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
..++++++++|.++++| +..+ ++++..++...+..+.+..++.+++.+++
T Consensus 328 ~~d~~~la~~I~~ll~d---~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 PMTSDSIISDINRTLAD---PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCHHHHHHHHHHHHcC---HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35899999999999999 5433 23333333333567788889998888865
No 115
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.00 E-value=0.0011 Score=66.12 Aligned_cols=161 Identities=12% Similarity=0.117 Sum_probs=99.9
Q ss_pred cEEEEEecccccCCHHHHHHHHHHHhhC---CCCe-EEEECCCCCCCCCCCCCCchhHHHhh-----cCCCccccccChH
Q 012735 263 SVIYVSFGSIAAVSEAEFLEIAWGLANC---KLPF-LWVVRPGLTRGSDCLEPLPSGFMEMV-----DGRGHLVKWAPQQ 333 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~-i~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~~~~vpq~ 333 (457)
+.++++.|... +.+.+..+++|+... ...+ ++.++.+. ..+.+.+.. .+++.+.++.+..
T Consensus 319 ~~~il~vGrl~--~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G~---------~~~~l~~~i~~~~l~~~V~f~G~~~~~ 387 (500)
T TIGR02918 319 PFSIITASRLA--KEKHIDWLVKAVVKAKKSVPELTFDIYGEGG---------EKQKLQKIINENQAQDYIHLKGHRNLS 387 (500)
T ss_pred CeEEEEEeccc--cccCHHHHHHHHHHHHhhCCCeEEEEEECch---------hHHHHHHHHHHcCCCCeEEEcCCCCHH
Confidence 34566677776 455666677776532 2233 33344432 112332222 2456677888878
Q ss_pred hhhcCCCCCCccc---ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC---CCC----HHHHHHHH
Q 012735 334 EVLAHPAVGAFWT---HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN---GLK----REEIEKTI 402 (457)
Q Consensus 334 ~lL~~~~~~~~I~---hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~---~~~----~~~l~~ai 402 (457)
+++..+++ +|. .-| ..++.||+++|+|+|+....+ .+...+++. .-|..++. .-+ .+.++++|
T Consensus 388 ~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~d~~~~~~~la~~I 461 (500)
T TIGR02918 388 EVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEEDDEDQIITALAEKI 461 (500)
T ss_pred HHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCccccchhHHHHHHHHHH
Confidence 89988888 665 233 469999999999999876531 234455552 45766652 122 78899999
Q ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 403 RRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 403 ~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.++++++....+.+++++.++.+ +.+..++...+.+++
T Consensus 462 ~~ll~~~~~~~~~~~a~~~a~~f--------s~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 462 VEYFNSNDIDAFHEYSYQIAEGF--------LTANIIEKWKKLVRE 499 (500)
T ss_pred HHHhChHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhh
Confidence 99996533455667776665554 477888777777764
No 116
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=97.97 E-value=0.015 Score=56.54 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=98.8
Q ss_pred cccCCCCCCcEEEEEeccccc----------CCHHHHHHHHHHHhhCCCCeEEEECCCCCC--CCCCCCCCchhHHHhhc
Q 012735 254 AWLDKQAPKSVIYVSFGSIAA----------VSEAEFLEIAWGLANCKLPFLWVVRPGLTR--GSDCLEPLPSGFMEMVD 321 (457)
Q Consensus 254 ~~l~~~~~~~vv~vs~Gs~~~----------~~~~~~~~~~~al~~~~~~~i~~~~~~~~~--~~~~~~~lp~~~~~~~~ 321 (457)
.|+...+.+++|-++.-.... ...+.+.++++.+...++++++........ ..+ .......+.+.++
T Consensus 226 ~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~d-D~~~~~~l~~~~~ 304 (426)
T PRK10017 226 HWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKD-DRMVALNLRQHVS 304 (426)
T ss_pred hhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCc-hHHHHHHHHHhcc
Confidence 455433345678887654431 112333345555555688877664321100 000 0001123334443
Q ss_pred C--CCccc--cccChH--hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhcccee-cCC-CC
Q 012735 322 G--RGHLV--KWAPQQ--EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQ-LEN-GL 393 (457)
Q Consensus 322 ~--~~~~~--~~vpq~--~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~-l~~-~~ 393 (457)
. +.++. ++-|.. .+++++++ +|.. =+-+..-|+.+|||.+.+++. +....-++. +|..-. .+. .+
T Consensus 305 ~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y~---~K~~~~~~~-lg~~~~~~~~~~l 377 (426)
T PRK10017 305 DPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINYE---HKSAGIMQQ-LGLPEMAIDIRHL 377 (426)
T ss_pred cccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeeeh---HHHHHHHHH-cCCccEEechhhC
Confidence 2 22332 333433 68877776 7743 344667788899999999983 444455577 687755 455 78
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHIL 447 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (457)
+.++|.+.+.++++|. +.+++..++--++++. ...+.+.++++.+.
T Consensus 378 ~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~~ 423 (426)
T PRK10017 378 LDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERIG 423 (426)
T ss_pred CHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 9999999999999985 4455555444444441 13445555555544
No 117
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.96 E-value=0.0039 Score=62.32 Aligned_cols=110 Identities=13% Similarity=0.120 Sum_probs=70.1
Q ss_pred CCCccccccChHhhhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhh----hc-cceecCCC
Q 012735 322 GRGHLVKWAPQQEVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDV----WK-VGLQLENG 392 (457)
Q Consensus 322 ~~~~~~~~vpq~~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~----lG-~g~~l~~~ 392 (457)
+|+.+.+...-.++++.+++ +|.- |--+++.||+.+|+|+|+... ....+.+.+. +| .|..++.
T Consensus 354 ~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd~----g~~~elv~~~~~~~~g~~G~lv~~- 426 (475)
T cd03813 354 DNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATDV----GSCRELIEGADDEALGPAGEVVPP- 426 (475)
T ss_pred CeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECCC----CChHHHhcCCcccccCCceEEECC-
Confidence 56677775555678877777 6543 334799999999999998543 3444555541 12 5766665
Q ss_pred CCHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012735 393 LKREEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTH 445 (457)
Q Consensus 393 ~~~~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457)
.++++++++|.++++|.+ ...+.+++++. ..+..+.++.++...+.
T Consensus 427 ~d~~~la~ai~~ll~~~~~~~~~~~~a~~~-------v~~~~s~~~~~~~y~~l 473 (475)
T cd03813 427 ADPEALARAILRLLKDPELRRAMGEAGRKR-------VERYYTLERMIDSYRRL 473 (475)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHH
Confidence 589999999999999832 22333333332 22344456666666554
No 118
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.91 E-value=0.00094 Score=64.44 Aligned_cols=100 Identities=13% Similarity=0.171 Sum_probs=68.2
Q ss_pred CCCccccccCh-HhhhcCCCCCCcccc--cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHH
Q 012735 322 GRGHLVKWAPQ-QEVLAHPAVGAFWTH--NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEI 398 (457)
Q Consensus 322 ~~~~~~~~vpq-~~lL~~~~~~~~I~h--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l 398 (457)
+++.+.++.++ ..++..+++-.+.++ |...++.||+.+|+|+|+..... .....+... ..|..++. -+.+++
T Consensus 261 ~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~l 335 (372)
T cd04949 261 DYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEAL 335 (372)
T ss_pred ceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHHH
Confidence 45566676665 358888888334443 33569999999999999865431 134556663 67877766 589999
Q ss_pred HHHHHHHhcccc-hHHHHHHHHHHHHHHH
Q 012735 399 EKTIRRVMVEKQ-GEEIRSRIFRLKEKAN 426 (457)
Q Consensus 399 ~~ai~~il~~~~-~~~~~~~a~~l~~~~~ 426 (457)
+++|.++++|.+ ...+.+++++.++++.
T Consensus 336 a~~i~~ll~~~~~~~~~~~~a~~~~~~~s 364 (372)
T cd04949 336 AEAIIELLNDPKLLQKFSEAAYENAERYS 364 (372)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 999999999842 3456666666655543
No 119
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=7.6e-05 Score=57.73 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=79.5
Q ss_pred EEEEecccccCCHHHHH--HHHHHHhhCCCCeEEEECCCCCCCCCCCCCCc-hhHHHhhcCCCccc--cccC-hHhhhcC
Q 012735 265 IYVSFGSIAAVSEAEFL--EIAWGLANCKLPFLWVVRPGLTRGSDCLEPLP-SGFMEMVDGRGHLV--KWAP-QQEVLAH 338 (457)
Q Consensus 265 v~vs~Gs~~~~~~~~~~--~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp-~~~~~~~~~~~~~~--~~vp-q~~lL~~ 338 (457)
||||-||....-..... ++.+-.+.-..++|+.++.+. ..| .+. ++. ++-+ -+.+...
T Consensus 2 ifVTvGstf~~f~rlv~k~e~~el~~~i~e~lIvQyGn~d--------~kpvagl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFYPFNRLVLKIEVLELTELIQEELIVQYGNGD--------IKPVAGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccchHHHHHhhHHHHHHHHHhhhheeeeecCCC--------ccccccc--------EEEeechHHHHHHHhhc
Confidence 78999999541111111 233333333568899998742 223 122 333 4444 3457767
Q ss_pred CCCCCcccccChhHHHHHHhhCCcccccCcc--------chhhHHHHHHHhhhccceecCC-CC-CHHHHHHHHHHHhc
Q 012735 339 PAVGAFWTHNGWNSTLESICEGIPMICMPCF--------TDQKVNARYVSDVWKVGLQLEN-GL-KREEIEKTIRRVMV 407 (457)
Q Consensus 339 ~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~--------~DQ~~na~~v~~~lG~g~~l~~-~~-~~~~l~~ai~~il~ 407 (457)
+++ +|+|+|.||++.++..++|.|++|-. ..|-..|..+++ ++.-+.... .. =.+.+......++.
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 777 99999999999999999999999964 368889999998 688777765 21 23344444444443
No 120
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.81 E-value=0.00047 Score=67.39 Aligned_cols=160 Identities=16% Similarity=0.195 Sum_probs=94.8
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHhhC---C--CCeEEEECCCCCCCCCCCCCCchhHHHhh-----cCCCccccccC
Q 012735 262 KSVIYVSFGSIAAVSEAEFLEIAWGLANC---K--LPFLWVVRPGLTRGSDCLEPLPSGFMEMV-----DGRGHLVKWAP 331 (457)
Q Consensus 262 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~---~--~~~i~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~~~~~~vp 331 (457)
++..+++.|.... .+.+..+++++... . .++.|.+.++.. ..+.+.+.. ..++.+.+|++
T Consensus 229 ~~~~il~~Grl~~--~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g~--------~~~~l~~~~~~~~~~~~V~f~G~v~ 298 (407)
T cd04946 229 DTLRIVSCSYLVP--VKRVDLIIKALAALAKARPSIKIKWTHIGGGP--------LEDTLKELAESKPENISVNFTGELS 298 (407)
T ss_pred CCEEEEEeecccc--ccCHHHHHHHHHHHHHhCCCceEEEEEEeCch--------HHHHHHHHHHhcCCCceEEEecCCC
Confidence 3456667777774 34445555555432 2 356665544320 112222111 24567789999
Q ss_pred hHh---hhcCCCCCCcccccC----hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHH
Q 012735 332 QQE---VLAHPAVGAFWTHNG----WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRR 404 (457)
Q Consensus 332 q~~---lL~~~~~~~~I~hgG----~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~ 404 (457)
+.+ ++..+++.++|...- .++++||+++|+|+|+.... ...+.+.+. +.|..++...++++++++|.+
T Consensus 299 ~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g~~e~i~~~-~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 299 NSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----GTPEIVDNG-GNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred hHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----CcHHHhcCC-CcEEEeCCCCCHHHHHHHHHH
Confidence 764 554444434765443 46899999999999986543 456677763 588888765589999999999
Q ss_pred Hhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012735 405 VMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 405 il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (457)
+++|.+ ...++++|++. +.+..+.+...++++
T Consensus 374 ll~~~~~~~~m~~~ar~~-------~~~~f~~~~~~~~~~ 406 (407)
T cd04946 374 FIDNEEEYQTMREKAREK-------WEENFNASKNYREFA 406 (407)
T ss_pred HHhCHHHHHHHHHHHHHH-------HHHHcCHHHhHHHhc
Confidence 999822 23334443333 334444565555543
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.80 E-value=0.01 Score=58.86 Aligned_cols=114 Identities=17% Similarity=0.163 Sum_probs=72.1
Q ss_pred CCCccccccCh-HhhhcCCCCCCccc---ccC-hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHH
Q 012735 322 GRGHLVKWAPQ-QEVLAHPAVGAFWT---HNG-WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKRE 396 (457)
Q Consensus 322 ~~~~~~~~vpq-~~lL~~~~~~~~I~---hgG-~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 396 (457)
+++.+.+|..+ ..+|+.+++ ||. .-| .+++.||+.+|+|+|+.... .+...+.+. ..|..++. -+++
T Consensus 455 d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG-~nG~LVp~-~D~~ 526 (578)
T PRK15490 455 ERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEG-VSGFILDD-AQTV 526 (578)
T ss_pred CcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccC-CcEEEECC-CChh
Confidence 56677777654 357888888 875 344 56999999999999977653 456666663 67888766 3455
Q ss_pred HHHHHHH---HHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 397 EIEKTIR---RVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 397 ~l~~ai~---~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
.+.+++. ++... .+....+++..++.+.+..+.+..++...+.+.+.
T Consensus 527 aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~~ 576 (578)
T PRK15490 527 NLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIASQ 576 (578)
T ss_pred hHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhc
Confidence 5555553 22322 11122233333333445667888888888777653
No 122
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.60 E-value=0.013 Score=52.69 Aligned_cols=104 Identities=17% Similarity=0.165 Sum_probs=67.7
Q ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCCCCC-CCCCCCCCeeEEecCCCCCCCCCCccCHH-HHHHHHHHhcchhHHHHHH
Q 012735 17 QGHISPMLQLANILHSQGFTITIIHTSFNS-PNPSSHPHLTFHFIQENLSASEASTDDLV-AFVSLLNTKCLVPFRDCLA 94 (457)
Q Consensus 17 ~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 94 (457)
.-|+.-+-.+.++|.++||+|.+-+-++.. ...-+..|+.+..+..--. .... .......+. ..+.
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~------~tl~~Kl~~~~eR~------~~L~ 77 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGG------VTLKEKLLESAERV------YKLS 77 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCC------ccHHHHHHHHHHHH------HHHH
Confidence 368888999999999999999988876443 1122236788888763110 1111 111111111 1344
Q ss_pred HHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchH
Q 012735 95 KLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGA 136 (457)
Q Consensus 95 ~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~ 136 (457)
++..+. +||+.+. -.++....+|--+|+|.|.+.....
T Consensus 78 ki~~~~---kpdv~i~-~~s~~l~rvafgLg~psIi~~D~eh 115 (346)
T COG1817 78 KIIAEF---KPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEH 115 (346)
T ss_pred HHHhhc---CCceEee-cCCcchhhHHhhcCCceEEecCChh
Confidence 444444 9999999 5688899999999999999866543
No 123
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.50 E-value=0.0011 Score=56.10 Aligned_cols=132 Identities=18% Similarity=0.231 Sum_probs=83.0
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhC----CCC-eEEEECCCCCCCCCCCCCCchhHHH--hhcCCCccccccCh-
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANC----KLP-FLWVVRPGLTRGSDCLEPLPSGFME--MVDGRGHLVKWAPQ- 332 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~----~~~-~i~~~~~~~~~~~~~~~~lp~~~~~--~~~~~~~~~~~vpq- 332 (457)
+++.+++..|+... .+.+..+++++..+ ... .++.++... . ...+ ....+ ...+++.+..++++
T Consensus 13 ~~~~~il~~g~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~-~----~~~~-~~~~~~~~~~~~i~~~~~~~~~ 84 (172)
T PF00534_consen 13 DKKKIILFIGRLDP--EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGE-Y----KKEL-KNLIEKLNLKENIIFLGYVPDD 84 (172)
T ss_dssp TTSEEEEEESESSG--GGTHHHHHHHHHHHHHHHHTTEEEEEESHCC-H----HHHH-HHHHHHTTCGTTEEEEESHSHH
T ss_pred CCCeEEEEEecCcc--ccCHHHHHHHHHHHHhhcCCCeEEEEEcccc-c----cccc-cccccccccccccccccccccc
Confidence 45567777888775 34444445555432 233 344444111 0 0000 11111 12356678888883
Q ss_pred --HhhhcCCCCCCcccc----cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHh
Q 012735 333 --QEVLAHPAVGAFWTH----NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVM 406 (457)
Q Consensus 333 --~~lL~~~~~~~~I~h----gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il 406 (457)
..++..+++ +|+. |+..++.||+.+|+|+|+.. ...+...+... +.|..++.. +.+++.++|.+++
T Consensus 85 ~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~-~~g~~~~~~-~~~~l~~~i~~~l 156 (172)
T PF00534_consen 85 ELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDG-VNGFLFDPN-DIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTT-TSEEEESTT-SHHHHHHHHHHHH
T ss_pred cccccccccee--ccccccccccccccccccccccceeecc----ccCCceeeccc-cceEEeCCC-CHHHHHHHHHHHH
Confidence 358888888 7766 56789999999999998744 55667777773 678888874 9999999999999
Q ss_pred cc
Q 012735 407 VE 408 (457)
Q Consensus 407 ~~ 408 (457)
++
T Consensus 157 ~~ 158 (172)
T PF00534_consen 157 ND 158 (172)
T ss_dssp HH
T ss_pred CC
Confidence 99
No 124
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.41 E-value=0.012 Score=51.94 Aligned_cols=70 Identities=19% Similarity=0.257 Sum_probs=49.4
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHHH
Q 012735 16 LQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLAK 95 (457)
Q Consensus 16 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (457)
..|+-.....+++.|.++||+|+++. . +...+..
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~---------------------------------------------~-~~~~~~~ 45 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA---------------------------------------------L-LLLLLLR 45 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE---------------------------------------------e-chHHHHH
Confidence 56999999999999999999999998 0 1111111
Q ss_pred HhhccCCCCeeEEEeCCCcchHH---HHHhHcCCCeEEEecc
Q 012735 96 LLADVEEEPIACLISDAMLPFTQ---AVADSLKLPRIVLRTG 134 (457)
Q Consensus 96 l~~~~~~~~pDlvi~D~~~~~~~---~~A~~l~iP~v~~~~~ 134 (457)
.++.. +||+|+......... ..+...++|++.....
T Consensus 46 ~~~~~---~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~ 84 (229)
T cd01635 46 ILRGF---KPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHG 84 (229)
T ss_pred HHhhc---CCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcC
Confidence 21122 899999887654333 4677889998886554
No 125
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.39 E-value=0.00071 Score=64.16 Aligned_cols=110 Identities=15% Similarity=0.342 Sum_probs=79.3
Q ss_pred CCCccccccChHhh---hcCCCCCCcccc-------cCh------hHHHHHHhhCCcccccCccchhhHHHHHHHhhhcc
Q 012735 322 GRGHLVKWAPQQEV---LAHPAVGAFWTH-------NGW------NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKV 385 (457)
Q Consensus 322 ~~~~~~~~vpq~~l---L~~~~~~~~I~h-------gG~------~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~ 385 (457)
+|+.+.+|+|+.++ |+. +.+++... +.+ +-+.+.|++|+|+|+. ++...+..|++. +.
T Consensus 207 ~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~~ 280 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-GL 280 (333)
T ss_pred CCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-Cc
Confidence 45688899998765 433 33222221 111 2377789999999985 456788999996 99
Q ss_pred ceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012735 386 GLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTH 445 (457)
Q Consensus 386 g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~ 445 (457)
|+.++ +.+++.+++..+. +++...+++|+++++++++ .|.--.+++++++..
T Consensus 281 G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 281 GFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred eEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 99987 5678999998864 3335679999999999999 677777777776653
No 126
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.23 E-value=0.0005 Score=55.59 Aligned_cols=127 Identities=18% Similarity=0.200 Sum_probs=67.0
Q ss_pred EEEEEeccccc-CCHHHHHH-HHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccCh-HhhhcCCC
Q 012735 264 VIYVSFGSIAA-VSEAEFLE-IAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQ-QEVLAHPA 340 (457)
Q Consensus 264 vv~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq-~~lL~~~~ 340 (457)
+.++++|+... ...+.+-+ +++.+++...++-+.+-+.. |+.+.+...+|+.+.+|++. .++++.++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~----------~~~l~~~~~~~v~~~g~~~e~~~~l~~~d 72 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNG----------PDELKRLRRPNVRFHGFVEELPEILAAAD 72 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECES----------S-HHCCHHHCTEEEE-S-HHHHHHHHC-S
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCC----------HHHHHHhcCCCEEEcCCHHHHHHHHHhCC
Confidence 45556666653 23333333 55555544344544443331 12232222457788888873 45888888
Q ss_pred CCCcccc---cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 341 VGAFWTH---NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 341 ~~~~I~h---gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+....+. |-.+++.|++.+|+|+|+.+.. ....++.. +.|..+ . -+++++.++|.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~~-----~~~~~~~~-~~~~~~-~-~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDNG-----AEGIVEED-GCGVLV-A-NDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHHH-----CHCHS----SEEEE--T-T-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCcc-----hhhheeec-CCeEEE-C-CCHHHHHHHHHHHhcC
Confidence 8544332 2348999999999999997761 23334443 777777 3 4999999999999875
No 127
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=97.21 E-value=0.00077 Score=50.43 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=50.3
Q ss_pred cccccccCCCCCCcEEEEEecccccC---CH--HHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhH
Q 012735 250 QSCIAWLDKQAPKSVIYVSFGSIAAV---SE--AEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGF 316 (457)
Q Consensus 250 ~~l~~~l~~~~~~~vv~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 316 (457)
..+..|+...+.++.|++|+||.... .. ..+..++++++.++.+++.++....... +..+|+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 33678999888999999999999973 22 4788899999999999999998765433 45677765
No 128
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.05 E-value=0.022 Score=53.64 Aligned_cols=131 Identities=13% Similarity=0.074 Sum_probs=74.3
Q ss_pred CCcEEEEEeccccc---CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccc--cCh-Hh
Q 012735 261 PKSVIYVSFGSIAA---VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKW--APQ-QE 334 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~--vpq-~~ 334 (457)
+++.|.+..|+... .+.+.+.++++.+.+.+.++++..++... ....+.+.+..+.. .+.+- ++| .+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e------~~~~~~i~~~~~~~-~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAE------KQRAERIAEALPGA-VVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHH------HHHHHHHHhhCCCC-eecCCCCHHHHHH
Confidence 34556666664333 77888889998887666676655443210 01122333322221 23332 333 46
Q ss_pred hhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccc---eecC-C-CCCHHHHHHHHHHHh
Q 012735 335 VLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVG---LQLE-N-GLKREEIEKTIRRVM 406 (457)
Q Consensus 335 lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g---~~l~-~-~~~~~~l~~ai~~il 406 (457)
+++++++ +|+. -.|.+.=|...|+|+|++=-..+ ..+..= +|-. +.-. . .++++++.++++++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~lfg~t~----p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTLYGATD----PGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEEECCCC----Hhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 8888887 8854 56788888899999987632221 111111 1111 1111 2 689999999998775
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.027 Score=55.02 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=76.0
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhc------CCCccccccC--
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVD------GRGHLVKWAP-- 331 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~------~~~~~~~~vp-- 331 (457)
+++.+||+||+......++.+...+..++..+--++|..+++.. +....++++... ++.++.+-.|
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~------~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~ 500 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD------AEINARLRDLAEREGVDSERLRFLPPAPNE 500 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc------HHHHHHHHHHHHHcCCChhheeecCCCCCH
Confidence 45689999999999999999999999999999999999987531 113334433332 4455555555
Q ss_pred -hHhhhcCCCCCCcc---cccChhHHHHHHhhCCcccccCccchhh
Q 012735 332 -QQEVLAHPAVGAFW---THNGWNSTLESICEGIPMICMPCFTDQK 373 (457)
Q Consensus 332 -q~~lL~~~~~~~~I---~hgG~~s~~eal~~gvP~v~~P~~~DQ~ 373 (457)
+.+=+.-+|+ |+ --||..|..|+|..|||+|..+ ++|+
T Consensus 501 ~h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~F 542 (620)
T COG3914 501 DHRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQF 542 (620)
T ss_pred HHHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHH
Confidence 3344555666 65 3699999999999999998876 4554
No 130
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.86 E-value=0.021 Score=56.02 Aligned_cols=137 Identities=18% Similarity=0.261 Sum_probs=87.8
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhh------cCCCccccccChH
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMV------DGRGHLVKWAPQQ 333 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~------~~~~~~~~~vpq~ 333 (457)
+++.+||.+|--....++..++..++.|+..+-.++|....+..-. .+|.... ++++.+.+-++-.
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 4567999999888889999999999999999999999987543111 2332111 2344444443321
Q ss_pred -----hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHH-HHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 334 -----EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARY-VSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 334 -----~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~-v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
-.|..-.+.-+.++ |..|.++.|+.|||||.+|...---..|.- +.. +|+|-.+.+ +.++-.+.--++-.
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 13322223335654 577999999999999999987544444433 445 788886655 44444433334444
Q ss_pred c
Q 012735 408 E 408 (457)
Q Consensus 408 ~ 408 (457)
|
T Consensus 904 d 904 (966)
T KOG4626|consen 904 D 904 (966)
T ss_pred C
Confidence 5
No 131
>PHA01633 putative glycosyl transferase group 1
Probab=96.80 E-value=0.0045 Score=58.02 Aligned_cols=101 Identities=16% Similarity=0.150 Sum_probs=62.4
Q ss_pred CCCccc---cccChH---hhhcCCCCCCcccc---cC-hhHHHHHHhhCCcccccCc------cchh------hHHHHHH
Q 012735 322 GRGHLV---KWAPQQ---EVLAHPAVGAFWTH---NG-WNSTLESICEGIPMICMPC------FTDQ------KVNARYV 379 (457)
Q Consensus 322 ~~~~~~---~~vpq~---~lL~~~~~~~~I~h---gG-~~s~~eal~~gvP~v~~P~------~~DQ------~~na~~v 379 (457)
+++.+. +++++. ++++.+++ ||.- =| ..+++||+++|+|+|+--. .+|+ .++....
T Consensus 201 ~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~ 278 (335)
T PHA01633 201 ANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEY 278 (335)
T ss_pred CcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHh
Confidence 445666 455644 57878887 7753 24 4689999999999988633 2332 2223222
Q ss_pred H--hhhccceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Q 012735 380 S--DVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKAN 426 (457)
Q Consensus 380 ~--~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~ 426 (457)
. .+ |.|..++. .++++++++|.+++...+.+.-.+++++.++++.
T Consensus 279 ~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f~ 325 (335)
T PHA01633 279 YDKEH-GQKWKIHK-FQIEDMANAIILAFELQDREERSMKLKELAKKYD 325 (335)
T ss_pred cCccc-CceeeecC-CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhcC
Confidence 2 33 66666665 7999999999999554221233445555555553
No 132
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.76 E-value=0.017 Score=46.80 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=63.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcch
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLV 87 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (457)
||++++.....| ...+++.|.++||+|++++............++.++.++... ......+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~-------k~~~~~~~-~------ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPR-------KSPLNYIK-Y------ 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCC-------CccHHHHH-H------
Confidence 577777666555 557799999999999999995333233333688888875321 11112221 1
Q ss_pred hHHHHHHHHhhccCCCCeeEEEeCCCcc---hHHHHHhHcC-CCeEEEecc
Q 012735 88 PFRDCLAKLLADVEEEPIACLISDAMLP---FTQAVADSLK-LPRIVLRTG 134 (457)
Q Consensus 88 ~~~~~l~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~l~-iP~v~~~~~ 134 (457)
.. +.++++.. +||+|.+-.... .+..++...+ +|.|....+
T Consensus 64 --~~-l~k~ik~~---~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 64 --FR-LRKIIKKE---KPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred --HH-HHHHhccC---CCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 11 23333332 999998776543 3445667788 999876554
No 133
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.64 E-value=0.084 Score=49.11 Aligned_cols=58 Identities=14% Similarity=0.117 Sum_probs=40.5
Q ss_pred ChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhH----HHHHHHhhhccceecCC
Q 012735 331 PQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKV----NARYVSDVWKVGLQLEN 391 (457)
Q Consensus 331 pq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~----na~~v~~~lG~g~~l~~ 391 (457)
|+..+|+.++. .+||---.+.+.||+..|+|+.++|.-. +.. ..+.+++. |+-..++.
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCC
Confidence 57788988876 3455555699999999999999999876 322 22445553 66555544
No 134
>PHA01630 putative group 1 glycosyl transferase
Probab=96.41 E-value=0.12 Score=48.72 Aligned_cols=113 Identities=9% Similarity=0.092 Sum_probs=65.2
Q ss_pred cccChHh---hhcCCCCCCccc---ccC-hhHHHHHHhhCCcccccCccc--hhhHH---HHHHHh-----------hhc
Q 012735 328 KWAPQQE---VLAHPAVGAFWT---HNG-WNSTLESICEGIPMICMPCFT--DQKVN---ARYVSD-----------VWK 384 (457)
Q Consensus 328 ~~vpq~~---lL~~~~~~~~I~---hgG-~~s~~eal~~gvP~v~~P~~~--DQ~~n---a~~v~~-----------~lG 384 (457)
.++|+.+ +++.+|+ +|. ..| ..++.|||++|+|+|+....+ |...+ +..+.. . +
T Consensus 196 ~~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~ 272 (331)
T PHA01630 196 TPLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-H 272 (331)
T ss_pred ccCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-c
Confidence 3466544 6778887 652 233 468999999999999977542 32221 111110 1 2
Q ss_pred cceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 385 VGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 385 ~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+|..++. +.+++.+++.+++.|.+.+.+++..+.-+.... +..+.++.++++++.++++
T Consensus 273 ~G~~v~~--~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~~ 331 (331)
T PHA01630 273 VGYFLDP--DIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEKY 331 (331)
T ss_pred cccccCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhcC
Confidence 4544433 677788888888876210123333332222222 4456888899998888763
No 135
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.05 E-value=0.5 Score=45.19 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=70.9
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCCCCeeE-EecCCCCCCCCCCccCHHHH
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSSHPHLTF-HFIQENLSASEASTDDLVAF 77 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~ 77 (457)
|+ ...+|||++-....|++.-..++.+.|+++ +.+|++++.+......+..+.++- +.++.. .......
T Consensus 1 ~~-~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~-------~~~~~~~ 72 (352)
T PRK10422 1 MD-KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNK-------KAGASEK 72 (352)
T ss_pred CC-CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccc-------cccHHHH
Confidence 55 467899999999999999999999999998 899999998755544443344432 233311 0000000
Q ss_pred HHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 78 VSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
+. .+..++.++.+. ++|++|.-........++...|.|..+
T Consensus 73 ~~--------~~~~l~~~lr~~----~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 73 IK--------NFFSLIKVLRAN----KYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HH--------HHHHHHHHHhhC----CCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 00 112234455544 999999654444556677777888755
No 136
>PRK14098 glycogen synthase; Provisional
Probab=95.86 E-value=0.055 Score=54.11 Aligned_cols=164 Identities=10% Similarity=-0.012 Sum_probs=92.0
Q ss_pred EEEEEecccccCCHHHHHHHHHHHhhC---CCCeEEEECCCCCCCCCCCCCCchhH---HHhhcCCCccccccChH---h
Q 012735 264 VIYVSFGSIAAVSEAEFLEIAWGLANC---KLPFLWVVRPGLTRGSDCLEPLPSGF---MEMVDGRGHLVKWAPQQ---E 334 (457)
Q Consensus 264 vv~vs~Gs~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~lp~~~---~~~~~~~~~~~~~vpq~---~ 334 (457)
.+++..|.... .+.+..+++++..+ +.++ +.++.+. ...-+.+ .++.++|+.+..+++.. .
T Consensus 308 ~~i~~vgRl~~--~KG~d~li~a~~~l~~~~~~l-vivG~G~-------~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~ 377 (489)
T PRK14098 308 PLVGVIINFDD--FQGAELLAESLEKLVELDIQL-VICGSGD-------KEYEKRFQDFAEEHPEQVSVQTEFTDAFFHL 377 (489)
T ss_pred CEEEEeccccc--cCcHHHHHHHHHHHHhcCcEE-EEEeCCC-------HHHHHHHHHHHHHCCCCEEEEEecCHHHHHH
Confidence 45556666663 34445555555442 3333 3334321 0011222 23335667777778864 5
Q ss_pred hhcCCCCCCccccc---Ch-hHHHHHHhhCCcccccCccc--hhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 335 VLAHPAVGAFWTHN---GW-NSTLESICEGIPMICMPCFT--DQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 335 lL~~~~~~~~I~hg---G~-~s~~eal~~gvP~v~~P~~~--DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+++.+|+ ++.-+ |. .+.+||+.+|+|.|+....+ |... ...++. +-|..++. .+++++.++|.++++.
T Consensus 378 ~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~--~~~~~~-~~G~l~~~-~d~~~la~ai~~~l~~ 451 (489)
T PRK14098 378 AIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIE--EVSEDK-GSGFIFHD-YTPEALVAKLGEALAL 451 (489)
T ss_pred HHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeee--cCCCCC-CceeEeCC-CCHHHHHHHHHHHHHH
Confidence 7888888 77543 22 37889999999888776532 2211 111233 67777766 5899999999987632
Q ss_pred cchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 409 KQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 409 ~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
.+.+... ++++. ++..+..|.++.+++.++..++.
T Consensus 452 ~~~~~~~---~~~~~---~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 452 YHDEERW---EELVL---EAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred HcCHHHH---HHHHH---HHhcCCCChHHHHHHHHHHHHHH
Confidence 1002221 22221 22235677888888888877653
No 137
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=95.59 E-value=2.2 Score=40.59 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=67.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCCCCee-EEecCCCCCCCCCCccCHHHHHHHHHHh
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSSHPHLT-FHFIQENLSASEASTDDLVAFVSLLNTK 84 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
|||++-..+.|++.-..++.++|+++ +.+|++++.+.+....+..+.++ ++.++.... .... ..+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~-----~~~~----~~~~-- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA-----KAGE----RKLA-- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh-----cchH----HHHH--
Confidence 68899999999999999999999997 89999999975554444334453 333331100 0000 0010
Q ss_pred cchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 85 CLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 85 ~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
. +..++..+.+. ++|++|.-........++...|+|.-+
T Consensus 70 --~-~~~l~~~lr~~----~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 --N-QFHLIKVLRAN----RYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred --H-HHHHHHHHHhC----CCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 1 11234445444 899999655456677888888999755
No 138
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.55 E-value=0.025 Score=46.70 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCCCC-CCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHHHHhhcc
Q 012735 22 PMLQLANILHSQGFTITIIHTSFNSPNP-SSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLAKLLADV 100 (457)
Q Consensus 22 p~l~la~~L~~~Gh~Vt~~~~~~~~~~~-~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 100 (457)
-+..|+++|.++||+|++++........ ....++.+..++-..... .......+ ..+...+ .. +..
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~l-~~-~~~ 72 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPW---PLRLLRFL--------RRLRRLL-AA-RRE 72 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSS---GGGHCCHH--------HHHHHHC-HH-CT-
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccch---hhhhHHHH--------HHHHHHH-hh-hcc
Confidence 4678999999999999999976332211 222567777766211110 00010111 1112222 11 222
Q ss_pred CCCCeeEEEeCCCc-chHHHHHh-HcCCCeEEEec
Q 012735 101 EEEPIACLISDAML-PFTQAVAD-SLKLPRIVLRT 133 (457)
Q Consensus 101 ~~~~pDlvi~D~~~-~~~~~~A~-~l~iP~v~~~~ 133 (457)
+||+|.+.... .....++. ..++|+|....
T Consensus 73 ---~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 73 ---RPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp -----SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred ---CCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 99999987643 22233444 78999998755
No 139
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.46 E-value=0.12 Score=38.30 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=52.0
Q ss_pred ccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhc-cceecCCCCCHHHHHHHHHHHhcccchHHHHHH-HHHHHHH
Q 012735 347 HNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWK-VGLQLENGLKREEIEKTIRRVMVEKQGEEIRSR-IFRLKEK 424 (457)
Q Consensus 347 hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~-a~~l~~~ 424 (457)
+|-..-+.|++.+|+|+|.-+. ......+.. | -++.. . +++++.++++.+++| +..+++ +++..+.
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~--~-~~~el~~~i~~ll~~---~~~~~~ia~~a~~~ 76 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY--N-DPEELAEKIEYLLEN---PEERRRIAKNARER 76 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE--C-CHHHHHHHHHHHHCC---HHHHHHHHHHHHHH
Confidence 5556789999999999988766 233333332 3 22222 2 899999999999999 443332 2222233
Q ss_pred HHHHHhcCCChHHHHHHHH
Q 012735 425 ANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (457)
+ .+.-+.+..++.++
T Consensus 77 v----~~~~t~~~~~~~il 91 (92)
T PF13524_consen 77 V----LKRHTWEHRAEQIL 91 (92)
T ss_pred H----HHhCCHHHHHHHHH
Confidence 3 35666777777665
No 140
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.45 E-value=0.82 Score=42.03 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=63.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCC--CeEEEEeCCCCCCCCCCCCCeeE-EecCCCCCCCCCCccCHHHHHHHHHHh
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQG--FTITIIHTSFNSPNPSSHPHLTF-HFIQENLSASEASTDDLVAFVSLLNTK 84 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~G--h~Vt~~~~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
|||++-..+.|++.-+.++.++|+++. -+|++++.+......+..+.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 688999999999999999999999984 89999999754444333334432 2322110 00001
Q ss_pred cchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 85 CLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 85 ~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
..+.+++..+.+. ++|+++.=........++...+++...
T Consensus 66 --~~~~~~~~~l~~~----~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRRR----RYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhhc----CCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 1112344455444 899998766555455566666766654
No 141
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.33 E-value=0.31 Score=46.14 Aligned_cols=105 Identities=16% Similarity=0.123 Sum_probs=67.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNT 83 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
.|||+++-....|++.-.+++-+.|+++ +.+++|++.+.........+.++-+..-.. ...+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~------~~~~---------- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK------KKKG---------- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccc------cccc----------
Confidence 4799999999999999999999999999 599999999744443332233322211100 0000
Q ss_pred hcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 84 KCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 84 ~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
.-...+..+...+.+. ++|+||.=....-...++..+++|.-.
T Consensus 65 ~~~~~~~~l~~~lr~~----~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 LGLKERLALLRTLRKE----RYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred cchHHHHHHHHHhhcc----CCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0001112233444433 799999777666677777788888765
No 142
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.13 E-value=0.95 Score=42.87 Aligned_cols=102 Identities=10% Similarity=0.063 Sum_probs=65.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCCCCeeE-EecCCCCCCCCCCccCHHHHHHHHHHh
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSSHPHLTF-HFIQENLSASEASTDDLVAFVSLLNTK 84 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~ 84 (457)
|||++-..+.|++.-..++.++|++. +.+|+|++.+......+..+.++- +.++.. .......
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--------~~~~~~~------ 66 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--------HGALELT------ 66 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--------ccchhhh------
Confidence 68999999999999999999999998 999999998754444433344432 222211 0000000
Q ss_pred cchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 85 CLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 85 ~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
....++.++.+. ++|++|.-........++...++|.-.
T Consensus 67 ---~~~~~~~~lr~~----~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 67 ---ERRRLGRSLREE----RYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred ---HHHHHHHHHhhc----CCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 111234445444 899999865555566777777888643
No 143
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.92 E-value=0.085 Score=44.29 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=57.4
Q ss_pred cCCCccCHHHHHHHHHHH-HHC-CCeEEEEeCCCCCCCC------CCC-CCeeEEecCCCCCCCCCCccCHHHHHHHHHH
Q 012735 13 PLPLQGHISPMLQLANIL-HSQ-GFTITIIHTSFNSPNP------SSH-PHLTFHFIQENLSASEASTDDLVAFVSLLNT 83 (457)
Q Consensus 13 ~~~~~gH~~p~l~la~~L-~~~-Gh~Vt~~~~~~~~~~~------~~~-~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
..++.||+.=|+.|.+.+ .++ .++..+++........ ... ..-++..+|........ .......
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~-------~~~~~~~ 76 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQS-------YLTSIFT 76 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechh-------hHhhHHH
Confidence 345569999999999999 444 4554445543221111 000 00123343321110111 1111122
Q ss_pred hcchhHHHHHHHHhhccCCCCeeEEEeCCCc--chHHHHHhHc------CCCeEEEecc
Q 012735 84 KCLVPFRDCLAKLLADVEEEPIACLISDAML--PFTQAVADSL------KLPRIVLRTG 134 (457)
Q Consensus 84 ~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~--~~~~~~A~~l------~iP~v~~~~~ 134 (457)
.....+. .+.-+.++ +||+||++.-. ...+.+|..+ |.+.|.+-+.
T Consensus 77 ~l~~~~~-~~~il~r~----rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 77 TLRAFLQ-SLRILRRE----RPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred HHHHHHH-HHHHHHHh----CCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 2222122 22233333 99999998754 5567789999 9999997654
No 144
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=94.78 E-value=0.73 Score=43.41 Aligned_cols=131 Identities=15% Similarity=0.059 Sum_probs=72.9
Q ss_pred cEE-EEEeccccc--CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccc--cCh-Hhhh
Q 012735 263 SVI-YVSFGSIAA--VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKW--APQ-QEVL 336 (457)
Q Consensus 263 ~vv-~vs~Gs~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~--vpq-~~lL 336 (457)
+.| ++-.||... .+.+.+.++++.+...+.++++..++... ....+.+.+.. .++.+.+- +.+ .+++
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e------~~~~~~i~~~~-~~~~l~g~~sL~elaali 251 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHE------EQRAKRLAEGF-PYVEVLPKLSLEQVARVL 251 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHH------HHHHHHHHccC-CcceecCCCCHHHHHHHH
Confidence 444 444444432 77888899998887667776554443210 11112222211 12223322 333 4588
Q ss_pred cCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHH------HHHHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 337 AHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNA------RYVSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 337 ~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na------~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
+++++ +|+. -.|.+.=|...|+|+|++=--.|...++ ..+.. . +-.+. .++++.+-++++++|+
T Consensus 252 ~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~--~-~~cm~-~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 252 AGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS--P-GKSMA-DLSAETVFQKLETLIS 321 (322)
T ss_pred HhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC--C-Ccccc-cCCHHHHHHHHHHHhh
Confidence 88888 8864 4678888999999998874433321111 11111 0 11111 6899999999988764
No 145
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.66 E-value=1.6 Score=38.74 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCC-----Ccc-----ccccChHhhhcCCCCCCcccccC-hh
Q 012735 283 IAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGR-----GHL-----VKWAPQQEVLAHPAVGAFWTHNG-WN 351 (457)
Q Consensus 283 ~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~-----~~~-----~~~vpq~~lL~~~~~~~~I~hgG-~~ 351 (457)
+.+.+++.+..+++.++.. .|+.+......| +.+ .++=|+.++|+.++- +|.-.. .|
T Consensus 189 l~k~l~~~g~~~lisfSRR----------Tp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSin 256 (329)
T COG3660 189 LVKILENQGGSFLISFSRR----------TPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSIN 256 (329)
T ss_pred HHHHHHhCCceEEEEeecC----------CcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhh
Confidence 4455566677777777643 333333222221 112 255689999977765 665554 58
Q ss_pred HHHHHHhhCCccccc
Q 012735 352 STLESICEGIPMICM 366 (457)
Q Consensus 352 s~~eal~~gvP~v~~ 366 (457)
...||+..|+|+.++
T Consensus 257 M~sEAasTgkPv~~~ 271 (329)
T COG3660 257 MCSEAASTGKPVFIL 271 (329)
T ss_pred hhHHHhccCCCeEEE
Confidence 899999999999553
No 146
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=94.00 E-value=0.97 Score=37.66 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=23.6
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 16 LQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 16 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
..|=-.-+..|+++|+++||+|++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~G~~v~v~~~~~ 39 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKRGHEVTVVSPGV 39 (177)
T ss_dssp SSHHHHHHHHHHHHHHHTT-EEEEEESS-
T ss_pred CChHHHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 34667789999999999999999998863
No 147
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=93.80 E-value=0.79 Score=38.36 Aligned_cols=94 Identities=14% Similarity=0.081 Sum_probs=53.4
Q ss_pred HCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeC
Q 012735 32 SQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISD 111 (457)
Q Consensus 32 ~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D 111 (457)
++||+|+|++...+.... .|++.+.+...-..... .......++........ ..+.+.+|.++ .|.||+|+.-
T Consensus 1 q~gh~v~fl~~~~~~~~~---~GV~~~~y~~~~~~~~~-~~~~~~~~e~~~~rg~a-v~~a~~~L~~~--Gf~PDvI~~H 73 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPIP---PGVRVVRYRPPRGPTPG-THPYVRDFEAAVLRGQA-VARAARQLRAQ--GFVPDVIIAH 73 (171)
T ss_pred CCCCEEEEEecCCCCCCC---CCcEEEEeCCCCCCCCC-CCcccccHHHHHHHHHH-HHHHHHHHHHc--CCCCCEEEEc
Confidence 479999999964322222 47777777641111110 00011111111111111 22344555544 2389999999
Q ss_pred CCcchHHHHHhHc-CCCeEEEe
Q 012735 112 AMLPFTQAVADSL-KLPRIVLR 132 (457)
Q Consensus 112 ~~~~~~~~~A~~l-~iP~v~~~ 132 (457)
...-.+..+-+.+ ++|.+.+.
T Consensus 74 ~GWGe~Lflkdv~P~a~li~Y~ 95 (171)
T PF12000_consen 74 PGWGETLFLKDVFPDAPLIGYF 95 (171)
T ss_pred CCcchhhhHHHhCCCCcEEEEE
Confidence 9887788899999 99998864
No 148
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.45 E-value=0.58 Score=40.28 Aligned_cols=113 Identities=18% Similarity=0.150 Sum_probs=59.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCCC----CCccCHHHHH
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS----HPHLTFHFIQENLSASE----ASTDDLVAFV 78 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i~~~~~~~~----~~~~~~~~~~ 78 (457)
||||+.==-+. +---+.+|+++|.+.||+|+++.+..+.+-... ...++......+..... .-...+..-.
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg~g~sit~~~pl~~~~~~~~~~~~~~~~~~v~GTPaDcv 79 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSGTGHSITLHKPLRVTEVEPGHDPGGVEAYAVSGTPADCV 79 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTTSTTS--SSSEEEEEEEE-TTCCSTTEEEEESS-HHHHH
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcCcceeecCCCCeEEEEEEecccCCCCCEEEEcCcHHHHH
Confidence 56666654444 345578899999888999999999865543322 13344433221111111 1111121111
Q ss_pred HHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCC-------------cchHHHHHhHcCCCeEEEecc
Q 012735 79 SLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAM-------------LPFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 79 ~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~-------------~~~~~~~A~~l~iP~v~~~~~ 134 (457)
.. .+..++... +||+||+..- +..+..-|...|||.|.++..
T Consensus 80 ~~-----------al~~~~~~~---~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~GipaIA~S~~ 134 (196)
T PF01975_consen 80 KL-----------ALDGLLPDK---KPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGIPAIAVSLD 134 (196)
T ss_dssp HH-----------HHHCTSTTS---S-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTSEEEEEEEE
T ss_pred HH-----------HHHhhhccC---CCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCCCeEEEecc
Confidence 11 122233221 5999997531 133455666789999998876
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=93.39 E-value=2 Score=45.91 Aligned_cols=115 Identities=10% Similarity=0.076 Sum_probs=70.6
Q ss_pred CCCccccccChH---hhhcCCCCCCccccc---C-hhHHHHHHhhCCcccccCccc--hhhHH--HHHH-Hhhhccceec
Q 012735 322 GRGHLVKWAPQQ---EVLAHPAVGAFWTHN---G-WNSTLESICEGIPMICMPCFT--DQKVN--ARYV-SDVWKVGLQL 389 (457)
Q Consensus 322 ~~~~~~~~vpq~---~lL~~~~~~~~I~hg---G-~~s~~eal~~gvP~v~~P~~~--DQ~~n--a~~v-~~~lG~g~~l 389 (457)
+++.+..+.+.. .+++.+|+ ||.-. | ..+.+||+.+|+|.|+....+ |.... ...+ +.. +-|..+
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 456777777754 48888887 87532 2 358999999999998876542 22211 1111 121 457666
Q ss_pred CCCCCHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 390 ENGLKREEIEKTIRRVMV----EKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 390 ~~~~~~~~l~~ai~~il~----~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+. .+++.+.++|.+++. | +..+++..+ . +.....+.+..++.+++.+++.
T Consensus 914 ~~-~D~eaLa~AL~rAL~~~~~d---pe~~~~L~~---~---am~~dFSWe~~A~qYeeLY~~l 967 (977)
T PLN02939 914 LT-PDEQGLNSALERAFNYYKRK---PEVWKQLVQ---K---DMNIDFSWDSSASQYEELYQRA 967 (977)
T ss_pred cC-CCHHHHHHHHHHHHHHhccC---HHHHHHHHH---H---HHHhcCCHHHHHHHHHHHHHHH
Confidence 65 588999999988875 4 333332221 1 1224567888888877766553
No 150
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.94 E-value=7.1 Score=35.57 Aligned_cols=107 Identities=11% Similarity=0.106 Sum_probs=62.6
Q ss_pred cccChHhhhcCCCCCCcccccChhHHHH-HHhhCCcccccCccchhhH--HHHHHHhhhccceecCCCCCHHHHHHHHHH
Q 012735 328 KWAPQQEVLAHPAVGAFWTHNGWNSTLE-SICEGIPMICMPCFTDQKV--NARYVSDVWKVGLQLENGLKREEIEKTIRR 404 (457)
Q Consensus 328 ~~vpq~~lL~~~~~~~~I~hgG~~s~~e-al~~gvP~v~~P~~~DQ~~--na~~v~~~lG~g~~l~~~~~~~~l~~ai~~ 404 (457)
.|-...++|.++++ .|-- .||..| ++-.|||+|.+|-.+-|+. .|+|-.+-||..+.+-. -.+..-..+.++
T Consensus 301 sqqsfadiLH~ada--algm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~ 375 (412)
T COG4370 301 SQQSFADILHAADA--ALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQE 375 (412)
T ss_pred eHHHHHHHHHHHHH--HHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHH
Confidence 33334445555444 3322 234333 4568999999999998864 45666665566665544 344444455556
Q ss_pred HhcccchHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 405 VMVEKQGEEIRSRIFRLK-EKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 405 il~~~~~~~~~~~a~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
+|.| +.+..+++.-+ +++. ..| ++..|.+.+.++.
T Consensus 376 ll~d---p~r~~air~nGqrRiG----qaG----aa~rIAe~l~e~a 411 (412)
T COG4370 376 LLGD---PQRLTAIRHNGQRRIG----QAG----AARRIAEELGEMA 411 (412)
T ss_pred HhcC---hHHHHHHHhcchhhcc----Ccc----hHHHHHHHHHHhc
Confidence 9999 77777776433 3332 333 5666666665543
No 151
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=90.69 E-value=6.7 Score=35.27 Aligned_cols=113 Identities=13% Similarity=0.105 Sum_probs=59.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCC-CCCCCCCccCHHHHH
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSS----HPHLTFHFIQEN-LSASEASTDDLVAFV 78 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i~~~-~~~~~~~~~~~~~~~ 78 (457)
.++||||+.==-+. |---+.+|+++|.+.| +|+++.+..+.+-... ...+++..+... -.....-...+..
T Consensus 3 ~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~~~y~v~GTPaD-- 78 (257)
T PRK13932 3 DKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSGMSHAMTLGVPLRIKEYQKNNRFFGYTVSGTPVD-- 78 (257)
T ss_pred CCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCCCcccccCCCCeEEEEEccCCCceEEEEcCcHHH--
Confidence 46788887653332 2244778899998888 7999988754433221 133444443310 0000000111111
Q ss_pred HHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCC-------------cchHHHHHhHcCCCeEEEec
Q 012735 79 SLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAM-------------LPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 79 ~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~-------------~~~~~~~A~~l~iP~v~~~~ 133 (457)
| +.-.+..++.. +||+||+..- +..+..-|..+|||.|.++.
T Consensus 79 ------C---V~lal~~~~~~----~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~GiPsIA~S~ 133 (257)
T PRK13932 79 ------C---IKVALSHILPE----KPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGIPSLAFSL 133 (257)
T ss_pred ------H---HHHHHHhhcCC----CCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCCCeEEEEc
Confidence 1 00112233322 8999997542 23445566678999999875
No 152
>PRK14099 glycogen synthase; Provisional
Probab=90.07 E-value=2.8 Score=41.96 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=58.2
Q ss_pred cCCCCCCccc---ccCh-hHHHHHHhhCCcccccCccc--hhhHHHHHH---HhhhccceecCCCCCHHHHHHHHHH---
Q 012735 337 AHPAVGAFWT---HNGW-NSTLESICEGIPMICMPCFT--DQKVNARYV---SDVWKVGLQLENGLKREEIEKTIRR--- 404 (457)
Q Consensus 337 ~~~~~~~~I~---hgG~-~s~~eal~~gvP~v~~P~~~--DQ~~na~~v---~~~lG~g~~l~~~~~~~~l~~ai~~--- 404 (457)
+.+|+ ||. +=|. .+.+||+++|+|.|+....+ |........ +.. +.|..++. .+++++.++|.+
T Consensus 368 a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l~~~-~d~~~La~ai~~a~~ 443 (485)
T PRK14099 368 AGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQFSP-VTADALAAALRKTAA 443 (485)
T ss_pred hcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEEeCC-CCHHHHHHHHHHHHH
Confidence 34666 664 3343 47789999998776654321 322111100 111 46777766 589999999987
Q ss_pred HhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 405 VMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 405 il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+++| +..+++..+-+ . ....|.++.+++.++..++.
T Consensus 444 l~~d---~~~~~~l~~~~---~---~~~fSw~~~a~~y~~lY~~l 479 (485)
T PRK14099 444 LFAD---PVAWRRLQRNG---M---TTDVSWRNPAQHYAALYRSL 479 (485)
T ss_pred HhcC---HHHHHHHHHHh---h---hhcCChHHHHHHHHHHHHHH
Confidence 5666 43333222211 1 14567888888888777653
No 153
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=89.35 E-value=2 Score=42.57 Aligned_cols=104 Identities=14% Similarity=0.121 Sum_probs=67.9
Q ss_pred cccChHh---hhcCCCCCCccc---ccCh-hHHHHHHhhCCc----ccccCccchhhHHHHHHHhhhccceecCCCCCHH
Q 012735 328 KWAPQQE---VLAHPAVGAFWT---HNGW-NSTLESICEGIP----MICMPCFTDQKVNARYVSDVWKVGLQLENGLKRE 396 (457)
Q Consensus 328 ~~vpq~~---lL~~~~~~~~I~---hgG~-~s~~eal~~gvP----~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~ 396 (457)
..+|+.+ +++.+|+ ++. +=|+ .++.||+++|+| +|+--..+- +.. ++-|+.++. .+++
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~~----l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQE----LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hHH----hCCcEEECC-CCHH
Confidence 4556554 5777887 775 3465 588899999999 554444322 222 234566665 6899
Q ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 397 EIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 397 ~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
+++++|.++|++.. +.-+++.+++.+.+. + .+...-++.+++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~----~-~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR----K-NDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh----h-CCHHHHHHHHHHHhhC
Confidence 99999999998521 244555556666654 3 5677778888777643
No 154
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=89.11 E-value=2.6 Score=41.89 Aligned_cols=103 Identities=18% Similarity=0.185 Sum_probs=60.7
Q ss_pred ccccChHh---hhcCCCCCCccc---ccCh-hHHHHHHhhCCc----ccccCccchhhHHHHHHHhhhccceecCCCCCH
Q 012735 327 VKWAPQQE---VLAHPAVGAFWT---HNGW-NSTLESICEGIP----MICMPCFTDQKVNARYVSDVWKVGLQLENGLKR 395 (457)
Q Consensus 327 ~~~vpq~~---lL~~~~~~~~I~---hgG~-~s~~eal~~gvP----~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 395 (457)
.+++++.+ +++.+++ +|. +-|+ .++.||+++|+| +|+--..+ . +.. . .-|..++. .+.
T Consensus 346 ~g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G-~---~~~---~-~~g~lv~p-~d~ 414 (460)
T cd03788 346 YRSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG-A---AEE---L-SGALLVNP-YDI 414 (460)
T ss_pred eCCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEecccc-c---hhh---c-CCCEEECC-CCH
Confidence 36777654 6778887 663 3454 477999999999 44332221 1 111 1 33556555 589
Q ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHI 446 (457)
Q Consensus 396 ~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (457)
++++++|.+++++.. ..-+++.++..+.+. ..+...-++.+++.+
T Consensus 415 ~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 415 DEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 999999999998621 112222223333332 355777777776654
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.86 E-value=19 Score=33.23 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=65.3
Q ss_pred CCCccccccC---hHhhhcCCCCCCcccc---cChh-HHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCC
Q 012735 322 GRGHLVKWAP---QQEVLAHPAVGAFWTH---NGWN-STLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLK 394 (457)
Q Consensus 322 ~~~~~~~~vp---q~~lL~~~~~~~~I~h---gG~~-s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~ 394 (457)
.++....++| ...+++.+++ ++.- .|.| ++.||+++|+|+|..... .....+.. .+.|. +.....
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~----~~~e~~~~-~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASDVG----GIPEVVED-GETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECCCC----ChHHHhcC-CCceE-ecCCCC
Confidence 4556678888 2346766666 6655 3554 469999999999655443 33444444 23466 433227
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 395 REEIEKTIRRVMVEKQGEEIRSRIFR-LKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 395 ~~~l~~ai~~il~~~~~~~~~~~a~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
.+.+.+++..++++ ...++...+ ..+.+. +..+.+...+.+.+.+.+
T Consensus 329 ~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 376 (381)
T COG0438 329 VEELADALEQLLED---PELREELGEAARERVE----EEFSWERIAEQLLELYEE 376 (381)
T ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHHHH
Confidence 89999999999998 422222222 222221 334455555666555544
No 156
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=87.93 E-value=4.9 Score=42.94 Aligned_cols=99 Identities=13% Similarity=0.160 Sum_probs=62.4
Q ss_pred hhhcCCCCCCcccc---cChh-HHHHHHhhCCc---ccccCccchhhHHHHHHHhhhc-cceecCCCCCHHHHHHHHHHH
Q 012735 334 EVLAHPAVGAFWTH---NGWN-STLESICEGIP---MICMPCFTDQKVNARYVSDVWK-VGLQLENGLKREEIEKTIRRV 405 (457)
Q Consensus 334 ~lL~~~~~~~~I~h---gG~~-s~~eal~~gvP---~v~~P~~~DQ~~na~~v~~~lG-~g~~l~~~~~~~~l~~ai~~i 405 (457)
++++.+++ ||.- -|+| +..|++++|+| ++++.-+ -..+.. +| -|+.++. .+.++++++|.++
T Consensus 371 aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~---~G~~~~----l~~~allVnP-~D~~~lA~AI~~a 440 (797)
T PLN03063 371 ALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEF---AGAGQS----LGAGALLVNP-WNITEVSSAIKEA 440 (797)
T ss_pred HHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCC---cCchhh----hcCCeEEECC-CCHHHHHHHHHHH
Confidence 57888888 7754 3775 77799999999 4444432 222221 23 4667766 6899999999999
Q ss_pred hc-ccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 406 MV-EKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 406 l~-~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
|+ +. +.-+++.+++.+... ..+...-++.+++.+++.
T Consensus 441 L~m~~--~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 441 LNMSD--EERETRHRHNFQYVK-----THSAQKWADDFMSELNDI 478 (797)
T ss_pred HhCCH--HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHHHH
Confidence 98 41 223344455555544 234566666666666543
No 157
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=87.55 E-value=1.5 Score=31.38 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=34.8
Q ss_pred CCCC-cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 3 QRKG-RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 3 ~~~~-~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|.++ +-++++..+...|...+..+|+.|.+.|+.|...-..
T Consensus 11 p~~~~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~r 52 (79)
T PF12146_consen 11 PENPPKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDHR 52 (79)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 4443 7788999999999999999999999999999876653
No 158
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=86.76 E-value=4.2 Score=38.71 Aligned_cols=103 Identities=11% Similarity=0.018 Sum_probs=68.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCCCCCCCCCCCCCeeEE-ecCCCCCCCCCCccCHHHHHHHHHH
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTSFNSPNPSSHPHLTFH-FIQENLSASEASTDDLVAFVSLLNT 83 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~~~~~~~~~~~g~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~ 83 (457)
||||++-..+.|++.-..++.+.|+++ +.+|++++.+......+..+.++-+ .++.. ..... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--------~~~~~-~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--------HGALE-I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--------cchhh-h-----
Confidence 589999999999999999999999997 9999999987554444443445432 22211 00000 0
Q ss_pred hcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 84 KCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 84 ~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
....+++.++.+. ++|++|.=....-...++...|+|.-.
T Consensus 67 ---~~~~~l~~~lr~~----~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLREK----RYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHhc----CCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 0122344555544 899998655455566777888888654
No 159
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=85.95 E-value=20 Score=32.20 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=18.7
Q ss_pred HHHHHHHHHHCCCeEEEEeCCCCCC
Q 012735 23 MLQLANILHSQGFTITIIHTSFNSP 47 (457)
Q Consensus 23 ~l~la~~L~~~Gh~Vt~~~~~~~~~ 47 (457)
+.+|+++|.+ +|+|+++.+..+.+
T Consensus 16 l~aL~~~l~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 16 INTLAELLSK-YHEVIIVAPENQRS 39 (253)
T ss_pred HHHHHHHHHh-CCcEEEEccCCCCc
Confidence 7788888875 68999999875543
No 160
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=85.38 E-value=15 Score=36.13 Aligned_cols=133 Identities=8% Similarity=0.111 Sum_probs=81.8
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhCC-CCeEEEECCCCCCCCCCCCCCchhHH--HhhcCCCccc-cccC-h-H
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANCK-LPFLWVVRPGLTRGSDCLEPLPSGFM--EMVDGRGHLV-KWAP-Q-Q 333 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~lp~~~~--~~~~~~~~~~-~~vp-q-~ 333 (457)
.++.++++| +.+.++.+.+..++++ ..+=+..... ..+.+. ++. +|+.+. ++.+ + .
T Consensus 281 ~~~~~l~~t-------~s~~I~~i~~Lv~~lPd~~f~Iga~te----------~s~kL~~L~~y-~nvvly~~~~~~~l~ 342 (438)
T TIGR02919 281 YRKQALILT-------NSDQIEHLEEIVQALPDYHFHIAALTE----------MSSKLMSLDKY-DNVKLYPNITTQKIQ 342 (438)
T ss_pred CcccEEEEC-------CHHHHHHHHHHHHhCCCcEEEEEecCc----------ccHHHHHHHhc-CCcEEECCcChHHHH
Confidence 345677776 2455566666666553 3443333222 122221 222 566665 7677 3 4
Q ss_pred hhhcCCCCCCcccccC--hhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccch
Q 012735 334 EVLAHPAVGAFWTHNG--WNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQG 411 (457)
Q Consensus 334 ~lL~~~~~~~~I~hgG--~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~ 411 (457)
+++..+++-+-|+||+ ..++.||+.+|+|++..-...... ..+.. |-.... -+.+++.++|.++|.+
T Consensus 343 ~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~---~~i~~----g~l~~~-~~~~~m~~~i~~lL~d--- 411 (438)
T TIGR02919 343 ELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR---DFIAS----ENIFEH-NEVDQLISKLKDLLND--- 411 (438)
T ss_pred HHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc---ccccC----CceecC-CCHHHHHHHHHHHhcC---
Confidence 6999999988999987 589999999999999876542211 11111 323333 4789999999999998
Q ss_pred HH-HHHHHHHH
Q 012735 412 EE-IRSRIFRL 421 (457)
Q Consensus 412 ~~-~~~~a~~l 421 (457)
++ ++++..+-
T Consensus 412 ~~~~~~~~~~q 422 (438)
T TIGR02919 412 PNQFRELLEQQ 422 (438)
T ss_pred HHHHHHHHHHH
Confidence 54 44444333
No 161
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=85.13 E-value=2.1 Score=35.23 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=44.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQE 62 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~ 62 (457)
..++||.+...|+-|-..-.+.++..|.+.|+.|-=+-++.- ..-.+.-||+.+.+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EV-R~gGkR~GF~Ivdl~t 60 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEV-REGGKRIGFKIVDLAT 60 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeee-ecCCeEeeeEEEEccC
Confidence 357999999999999999999999999999999865444311 1122236888888874
No 162
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=84.67 E-value=35 Score=31.97 Aligned_cols=271 Identities=13% Similarity=0.086 Sum_probs=125.7
Q ss_pred CeeEEEeCCCcchH-HHHHhHcCCCeEEEecchHHHHHHHHhhhhhhhcCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 012735 104 PIACLISDAMLPFT-QAVADSLKLPRIVLRTGGASSFVVFAAFPLLKERGYFPIQDSKGQEPVVELPPLKIKDLPVINTR 182 (457)
Q Consensus 104 ~pDlvi~D~~~~~~-~~~A~~l~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (457)
.||+.|-.+..+.. ...+...++|++.+...|..........-. +.. .+ ...+
T Consensus 150 ~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML~~l~q-rq~--------------s~-----------~l~~ 203 (465)
T KOG1387|consen 150 PPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDMLKKLFQ-RQK--------------SG-----------ILVW 203 (465)
T ss_pred CchheEecCCCcchhHHHHHHccCceEEEEecccccHHHHHHHHh-hhh--------------cc-----------hhhh
Confidence 89999877665434 455668899999987776554332211000 000 00 0001
Q ss_pred CChhHHHHHHhhhhcc-ccccEEEEcCchhhhHHHHHHHHhhcCCC-ccccCccccCCCCCCCCCccCccccccccCCCC
Q 012735 183 DPETLYEIVNGMVDGA-KVSSGIIWNTFEDLEESALATLRQQFSIP-IFPIGPFHICIPASPSSLLTQDQSCIAWLDKQA 260 (457)
Q Consensus 183 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~le~~~~~~~~~~~~~p-~~~vGp~~~~~~~~~~~~~~~~~~l~~~l~~~~ 260 (457)
..-..+++|..+.... ..++.+++|+.+.-... .+-|+.. ...|-|.+... ++.+--...+
T Consensus 204 ~KlaY~rlFa~lY~~~G~~ad~vm~NssWT~nHI-----~qiW~~~~~~iVyPPC~~e------------~lks~~~te~ 266 (465)
T KOG1387|consen 204 GKLAYWRLFALLYQSAGSKADIVMTNSSWTNNHI-----KQIWQSNTCSIVYPPCSTE------------DLKSKFGTEG 266 (465)
T ss_pred HHHHHHHHHHHHHHhccccceEEEecchhhHHHH-----HHHhhccceeEEcCCCCHH------------HHHHHhcccC
Confidence 1223456666655544 66789999998754322 3333333 22232222111 1222111122
Q ss_pred CCcEEEEEecccccC-CHHHHHHHHHHHhhCC-----CC--eEEEECCCCCCCCCC---CCCCchhHHHhhcCCCccccc
Q 012735 261 PKSVIYVSFGSIAAV-SEAEFLEIAWGLANCK-----LP--FLWVVRPGLTRGSDC---LEPLPSGFMEMVDGRGHLVKW 329 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~-~~~~~~~~~~al~~~~-----~~--~i~~~~~~~~~~~~~---~~~lp~~~~~~~~~~~~~~~~ 329 (457)
.+-...+++|-.-.. ..+.++..+--+++.+ .+ .+++=+.....+.+. +..+.+.+ ..++++.+..-
T Consensus 267 ~r~~~ll~l~Q~RPEKnH~~Lql~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L--~i~~~v~F~~N 344 (465)
T KOG1387|consen 267 ERENQLLSLAQFRPEKNHKILQLFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEEL--KIPKHVQFEKN 344 (465)
T ss_pred CcceEEEEEeecCcccccHHHHHHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhc--CCccceEEEec
Confidence 344566666655531 2222333222223222 22 222222222111110 11111111 22355677788
Q ss_pred cChHh---hhcCCCCCCcccccChh-----HHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHH
Q 012735 330 APQQE---VLAHPAVGAFWTHNGWN-----STLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKT 401 (457)
Q Consensus 330 vpq~~---lL~~~~~~~~I~hgG~~-----s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~a 401 (457)
+|+.+ +|..+.. -| |+=|| ++.|.+++|.=+|+---.+--.+.-.--.-+ ..|-. ..|.++-+++
T Consensus 345 ~Py~~lv~lL~~a~i--Gv-h~MwNEHFGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~-~tGFl---a~t~~EYaE~ 417 (465)
T KOG1387|consen 345 VPYEKLVELLGKATI--GV-HTMWNEHFGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGE-TTGFL---APTDEEYAEA 417 (465)
T ss_pred CCHHHHHHHhcccee--eh-hhhhhhhcchhHHHHHhcCceEEEeCCCCCceeeeeccCCc-cceee---cCChHHHHHH
Confidence 88766 4544433 22 33333 7889999986443321111000000000000 11111 2577888888
Q ss_pred HHHHhcc-cc-hHHHHHHHHHHHHHHH
Q 012735 402 IRRVMVE-KQ-GEEIRSRIFRLKEKAN 426 (457)
Q Consensus 402 i~~il~~-~~-~~~~~~~a~~l~~~~~ 426 (457)
+-+++.. ++ +-.+|++||+--.++.
T Consensus 418 iLkIv~~~~~~r~~~r~~AR~s~~RFs 444 (465)
T KOG1387|consen 418 ILKIVKLNYDERNMMRRNARKSLARFG 444 (465)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 8888764 22 5678888888777775
No 163
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=83.99 E-value=1.7 Score=37.12 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecC
Q 012735 6 GRRLVLFPLPLQGHISP------------MLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQ 61 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p------------~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~ 61 (457)
.+|||+...++.-.+.| ..+||+++..+|++|+++..+..... ..+++.+.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~---p~~~~~i~v~ 67 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP---PPGVKVIRVE 67 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS-------TTEEEEE-S
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc---cccceEEEec
Confidence 45666666666555543 68899999999999999999732111 1466666654
No 164
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=83.96 E-value=5.5 Score=36.61 Aligned_cols=80 Identities=13% Similarity=0.150 Sum_probs=58.6
Q ss_pred CCCcc-ccccC---hHhhhcCCCCCCcccc--cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCC
Q 012735 322 GRGHL-VKWAP---QQEVLAHPAVGAFWTH--NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLK 394 (457)
Q Consensus 322 ~~~~~-~~~vp---q~~lL~~~~~~~~I~h--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~ 394 (457)
+++.+ .+++| +.++|+.+|++.|+|+ =|.||++-.+..|+|+++--. -+.+.. +.+ .|+-+..+. .++
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~---n~fwqd-l~e-~gv~Vlf~~d~L~ 280 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRD---NPFWQD-LTE-QGLPVLFTGDDLD 280 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecC---CchHHH-HHh-CCCeEEecCCccc
Confidence 45554 48888 6679999999888876 479999999999999987533 233344 444 388887766 788
Q ss_pred HHHHHHHHHHHh
Q 012735 395 REEIEKTIRRVM 406 (457)
Q Consensus 395 ~~~l~~ai~~il 406 (457)
...++++=+.+.
T Consensus 281 ~~~v~e~~rql~ 292 (322)
T PRK02797 281 EDIVREAQRQLA 292 (322)
T ss_pred HHHHHHHHHHHH
Confidence 888887755543
No 165
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=83.67 E-value=12 Score=33.50 Aligned_cols=96 Identities=14% Similarity=0.113 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHCCCeEEEEeCCCCCCCCCC----CCCeeEEecCC--CCCCCCCCccCHHHHHHHHHHhcchhHHHHHHH
Q 012735 22 PMLQLANILHSQGFTITIIHTSFNSPNPSS----HPHLTFHFIQE--NLSASEASTDDLVAFVSLLNTKCLVPFRDCLAK 95 (457)
Q Consensus 22 p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (457)
-+.+|+++|.+.| +|+++.+..+.+-... ...+++..++. +. ........+..-. .- -+..
T Consensus 15 Gi~aL~~~l~~~g-~V~VvAP~~~~Sg~g~ait~~~pl~~~~~~~~~~~-~~~~v~GTPaDcv-------~~----gl~~ 81 (244)
T TIGR00087 15 GIRALYQALKELG-EVTVVAPARQRSGTGHSLTLFEPLRVGQVKVKNGA-HIYAVDGTPTDCV-------IL----GINE 81 (244)
T ss_pred hHHHHHHHHHhCC-CEEEEeCCCCccccccCcCCCCCeEEEEeccCCCc-cEEEEcCcHHHHH-------HH----HHHH
Confidence 4678899999988 8999998755433321 13445544431 11 0000001111100 00 1222
Q ss_pred HhhccCCCCeeEEEeCCC-------------cchHHHHHhHcCCCeEEEecc
Q 012735 96 LLADVEEEPIACLISDAM-------------LPFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 96 l~~~~~~~~pDlvi~D~~-------------~~~~~~~A~~l~iP~v~~~~~ 134 (457)
+... +||+||+..- +..+..-|...|||.|.++..
T Consensus 82 l~~~----~pDLVvSGiN~G~N~g~~v~ySGTVgAA~ea~~~GipaiA~S~~ 129 (244)
T TIGR00087 82 LMPE----VPDLVISGINAGENLGTDVTYSGTVGAAMEAAIHGVPAIAISLQ 129 (244)
T ss_pred hccC----CCCeEEeccccCCCCCccEecchhHHHHHHHHHcCCCeEEEEec
Confidence 3322 8999986542 234455666789999998753
No 166
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=83.54 E-value=6.7 Score=33.52 Aligned_cols=99 Identities=9% Similarity=0.037 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC-CC----C-CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS-FN----S-PNPSSHPHLTFHFIQENLSASEASTDDLVAFVS 79 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~-~~----~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (457)
+..|.+++..+.|-....+.+|-+.+.+|+.|.++--- .. + ....+..++++...+.++.-.. .+..+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e--- 95 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRER--- 95 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcHH---
Confidence 56799999999999999999999999999999986521 11 1 1122235788888776533221 11111
Q ss_pred HHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcc
Q 012735 80 LLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLP 115 (457)
Q Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~ 115 (457)
-...+...+....+.+... ++|+||.|....
T Consensus 96 -~~~~~~~~~~~a~~~l~~~----~ydlvVLDEi~~ 126 (191)
T PRK05986 96 -DIAAAREGWEEAKRMLADE----SYDLVVLDELTY 126 (191)
T ss_pred -HHHHHHHHHHHHHHHHhCC----CCCEEEEehhhH
Confidence 1122333333333333322 899999998653
No 167
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=83.08 E-value=2.6 Score=33.92 Aligned_cols=39 Identities=21% Similarity=0.192 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++.+|++.+.++-+|-.-..-++..|.++|++|+++...
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 567899999999999999999999999999999999875
No 168
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=82.90 E-value=2.4 Score=33.12 Aligned_cols=37 Identities=8% Similarity=0.140 Sum_probs=25.6
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQG---HISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~g---H~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||+|+.-|-.+ .-.-.++++.+-++|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 578888776533 3346889999999999999998875
No 169
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=81.99 E-value=22 Score=29.02 Aligned_cols=135 Identities=17% Similarity=0.199 Sum_probs=71.3
Q ss_pred EEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCC
Q 012735 264 VIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGA 343 (457)
Q Consensus 264 vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~ 343 (457)
.|-|-+||.. +....+++...|+..+..+-+.+... .+.|+.+.+ ++...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~sa--------HR~p~~l~~----------~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASA--------HRTPERLLE----------FVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--T--------TTSHHHHHH----------HHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEec--------cCCHHHHHH----------HHHHhcc-CCCEE--
Confidence 3666678877 67888899999999887666666543 346666532 1111100 12344
Q ss_pred cccccCh----hHHHHHHhhCCcccccCccchhhHHHH----HHHhhhccceecCC-CCCHHHHHHHHHHHh--cccchH
Q 012735 344 FWTHNGW----NSTLESICEGIPMICMPCFTDQKVNAR----YVSDVWKVGLQLEN-GLKREEIEKTIRRVM--VEKQGE 412 (457)
Q Consensus 344 ~I~hgG~----~s~~eal~~gvP~v~~P~~~DQ~~na~----~v~~~lG~g~~l~~-~~~~~~l~~ai~~il--~~~~~~ 412 (457)
||.-.|. .++..++. -+|+|.+|....+..... .++---|+++..-. + +...-+-.--++| .| +
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~-~~~nAA~~A~~ILa~~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN-NGFNAALLAARILALKD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST-HHHHHHHHHHHHHHTT----H
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc-CchHHHHHHHHHHhcCC---H
Confidence 8877774 34555555 899999999877553332 22210144433322 1 1222221222333 45 7
Q ss_pred HHHHHHHHHHHHHH
Q 012735 413 EIRSRIFRLKEKAN 426 (457)
Q Consensus 413 ~~~~~a~~l~~~~~ 426 (457)
+++++.+..+++.+
T Consensus 134 ~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 134 ELREKLRAYREKMK 147 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888876
No 170
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=81.92 E-value=2.4 Score=33.79 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=29.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||++...|+.+=.. ...+.++|.++|++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECC
Confidence 578888888765555 999999999999999999886
No 171
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=81.59 E-value=31 Score=31.04 Aligned_cols=39 Identities=8% Similarity=0.045 Sum_probs=24.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSP 47 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 47 (457)
||||+.==-+. |---..+|+++|.+ +|+|+++.+..+.+
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCc
Confidence 35555432222 22346778888865 68999999875443
No 172
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=81.32 E-value=15 Score=30.42 Aligned_cols=98 Identities=10% Similarity=0.127 Sum_probs=57.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE---eCC--CCC-CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHH
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITII---HTS--FNS-PNPSSHPHLTFHFIQENLSASEASTDDLVAFVSL 80 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~---~~~--~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (457)
.-|.+.+.++.|-....+.+|-+.+.+|+.|.|+ -.. ..+ ....+.+++++...+.+..-.. .+..+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~~~-- 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEEDI-- 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHHHH--
Confidence 4577888889999999999999999999999993 332 111 1122335788888775433211 1111111
Q ss_pred HHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcc
Q 012735 81 LNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLP 115 (457)
Q Consensus 81 ~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~ 115 (457)
..+...++. ..+.++.. ++|+||.|....
T Consensus 78 --~~a~~~~~~-a~~~~~~~---~~dLlVLDEi~~ 106 (159)
T cd00561 78 --AAAAEGWAF-AKEAIASG---EYDLVILDEINY 106 (159)
T ss_pred --HHHHHHHHH-HHHHHhcC---CCCEEEEechHh
Confidence 122233332 22333332 899999998653
No 173
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=80.68 E-value=11 Score=34.18 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=23.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||+++..-+. .-.|+++|.++||+|+..+..
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t 32 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTT 32 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEcc
Confidence 45666543332 668999999999999987764
No 174
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=80.42 E-value=10 Score=33.80 Aligned_cols=98 Identities=19% Similarity=0.246 Sum_probs=52.1
Q ss_pred CHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHH
Q 012735 19 HISPMLQLANILHSQGFTITIIHTSFNSPNPSS----HPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLA 94 (457)
Q Consensus 19 H~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (457)
|---+.+|+++|. .+++|+++.+..+.+-... ...++...+... ......-+. .|. .-.+.
T Consensus 12 ~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~s~slTl~~Plr~~~~~~~---~~av~GTPa--------DCV---~lal~ 76 (252)
T COG0496 12 HAPGIRALARALR-EGADVTVVAPDREQSGASHSLTLHEPLRVRQVDNG---AYAVNGTPA--------DCV---ILGLN 76 (252)
T ss_pred CCHHHHHHHHHHh-hCCCEEEEccCCCCcccccccccccCceeeEeccc---eEEecCChH--------HHH---HHHHH
Confidence 3344667788888 9999999999855443321 122333333220 000001110 111 11233
Q ss_pred HHhhccCCCCeeEEEeCCC-------------cchHHHHHhHcCCCeEEEecc
Q 012735 95 KLLADVEEEPIACLISDAM-------------LPFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 95 ~l~~~~~~~~pDlvi~D~~-------------~~~~~~~A~~l~iP~v~~~~~ 134 (457)
.+.++. +||+||+..- +..+..=|..+|||.|.++..
T Consensus 77 ~l~~~~---~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 77 ELLKEP---RPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HhccCC---CCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 444332 6999997542 233444566789999998765
No 175
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=80.38 E-value=10 Score=34.66 Aligned_cols=39 Identities=13% Similarity=0.269 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+..+|.+...|+-|--.-.-+|.+.|.++||.|-++.-.
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVD 88 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVD 88 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEEC
Confidence 356889999999999999999999999999999998865
No 176
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=79.91 E-value=44 Score=30.06 Aligned_cols=95 Identities=16% Similarity=0.170 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCCCCCC----CCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHHHH
Q 012735 21 SPMLQLANILHSQGFTITIIHTSFNSPNPSS----HPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLAKL 96 (457)
Q Consensus 21 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~----~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 96 (457)
--+.+|+++|.+. |+|+++.+..+.+-... ...+++..+.++. ..-...+.. |. .-.+..+
T Consensus 14 ~Gi~aL~~~l~~~-~~V~VvAP~~~qSg~g~ait~~~pl~~~~~~~~~---~~v~GTPaD--------cV---~~gl~~l 78 (250)
T PRK00346 14 PGIRALAEALREL-ADVTVVAPDRERSGASHSLTLTRPLRVEKVDNGF---YAVDGTPTD--------CV---HLALNGL 78 (250)
T ss_pred hhHHHHHHHHHhC-CCEEEEeCCCCCcCCcccccCCCCeEEEEecCCe---EEECCcHHH--------HH---HHHHHhh
Confidence 3477889999988 79999998754433321 1334444432110 000011110 00 0012233
Q ss_pred hhccCCCCeeEEEeCCC-------------cchHHHHHhHcCCCeEEEecc
Q 012735 97 LADVEEEPIACLISDAM-------------LPFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 97 ~~~~~~~~pDlvi~D~~-------------~~~~~~~A~~l~iP~v~~~~~ 134 (457)
... +||+||+..- +..+..-|...|||.|.++..
T Consensus 79 ~~~----~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~GiPaiA~S~~ 125 (250)
T PRK00346 79 LDP----KPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGIPAIAVSLA 125 (250)
T ss_pred ccC----CCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCCCeEEEecc
Confidence 322 8999997542 234455666789999998753
No 177
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=79.84 E-value=2.7 Score=36.07 Aligned_cols=39 Identities=18% Similarity=0.146 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.+||++.-.|+.|=+.-...++++|.++||+|+++.++
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 456787777776554444799999999999999999986
No 178
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=79.44 E-value=42 Score=30.44 Aligned_cols=39 Identities=8% Similarity=0.109 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSP 47 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~ 47 (457)
||||+.==-+. |-.-+.+|+++|...| +|+++.+..+.+
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCc
Confidence 34444432222 3345778899998888 799998875443
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=79.24 E-value=3.1 Score=32.51 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
||++.+.++-.|.....-++..|.++|++|..+...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999887753
No 180
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=79.23 E-value=3.8 Score=34.45 Aligned_cols=33 Identities=9% Similarity=0.110 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||.++.-.+. .--.|+++...|||+||-++..
T Consensus 1 mKIaiIgAsG~----~Gs~i~~EA~~RGHeVTAivRn 33 (211)
T COG2910 1 MKIAIIGASGK----AGSRILKEALKRGHEVTAIVRN 33 (211)
T ss_pred CeEEEEecCch----hHHHHHHHHHhCCCeeEEEEeC
Confidence 56766654442 2346899999999999999974
No 181
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=77.49 E-value=21 Score=33.44 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=30.6
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 7 RRLVLFP-LPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 7 ~~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
.||+|++ -||-|-..-..++|-.|++.|..|.+++++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDP 40 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDP 40 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 4665555 5566999999999999999999988888763
No 182
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=77.02 E-value=11 Score=34.36 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=33.4
Q ss_pred ccccccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCc
Q 012735 325 HLVKWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPC 368 (457)
Q Consensus 325 ~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~ 368 (457)
.+.+-++-.+||.+++. +||-.+. +-.||+.+|+|++++..
T Consensus 186 ~~~~~~~~~~Ll~~s~~--VvtinSt-vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 186 IIDDDVNLYELLEQSDA--VVTINST-VGLEALLHGKPVIVFGR 226 (269)
T ss_pred EECCCCCHHHHHHhCCE--EEEECCH-HHHHHHHcCCceEEecC
Confidence 34466777899988887 8877665 88999999999999875
No 183
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=76.85 E-value=14 Score=31.01 Aligned_cols=97 Identities=8% Similarity=0.090 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE---eCC--CCC-CCCCCCCCeeEEecCCCCCCCCCCccCHHHHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITII---HTS--FNS-PNPSSHPHLTFHFIQENLSASEASTDDLVAFVS 79 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~---~~~--~~~-~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (457)
+.-|.+++..+.|-....+.+|-+.+.+|+.|.++ -.. ..+ ....+ .++++.....++.-... +.....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~~---~~~~~~- 79 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWETQ---NREADT- 79 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCCeecCC---CcHHHH-
Confidence 45678888899999999999999999999999654 332 111 11222 26788887765432221 111111
Q ss_pred HHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCc
Q 012735 80 LLNTKCLVPFRDCLAKLLADVEEEPIACLISDAML 114 (457)
Q Consensus 80 ~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~ 114 (457)
..+...+....+.+... ++|+||.|...
T Consensus 80 ---~~~~~~~~~a~~~l~~~----~~DlvVLDEi~ 107 (173)
T TIGR00708 80 ---AIAKAAWQHAKEMLADP----ELDLVLLDELT 107 (173)
T ss_pred ---HHHHHHHHHHHHHHhcC----CCCEEEehhhH
Confidence 11223333332333322 89999999755
No 184
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=75.77 E-value=13 Score=37.75 Aligned_cols=91 Identities=14% Similarity=0.110 Sum_probs=51.4
Q ss_pred hHhhhcCCCCCCccc---ccCh-hHHHHHHhhCCcccccCccch-hhHHHHHHHhhhccceecCC------CCCHHHHHH
Q 012735 332 QQEVLAHPAVGAFWT---HNGW-NSTLESICEGIPMICMPCFTD-QKVNARYVSDVWKVGLQLEN------GLKREEIEK 400 (457)
Q Consensus 332 q~~lL~~~~~~~~I~---hgG~-~s~~eal~~gvP~v~~P~~~D-Q~~na~~v~~~lG~g~~l~~------~~~~~~l~~ 400 (457)
..+++..+++ +|. +=|+ -+++||+.+|+|+|+....+= ... -..+...-..|+.+.. ..+.++|++
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v-~E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFM-EEHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhh-HHHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 5566766666 665 3454 499999999999998876421 111 1122210014555532 346778888
Q ss_pred HHHHHhcccchHH--HHHHHHHHHHHH
Q 012735 401 TIRRVMVEKQGEE--IRSRIFRLKEKA 425 (457)
Q Consensus 401 ai~~il~~~~~~~--~~~~a~~l~~~~ 425 (457)
++.+++...+++. .|.+++++++++
T Consensus 545 ~m~~~~~~~~r~~~~~r~~~~r~s~~f 571 (590)
T cd03793 545 YMYEFCQLSRRQRIIQRNRTERLSDLL 571 (590)
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHhC
Confidence 8888886532222 222333555544
No 185
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=75.77 E-value=14 Score=33.41 Aligned_cols=36 Identities=17% Similarity=0.038 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
++|..-|+-|......++|..+++.|+.|.++....
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~ 38 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDP 38 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCC
Confidence 455567788999999999999999999999998864
No 186
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=75.03 E-value=2.3 Score=40.93 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=64.5
Q ss_pred CCCccc-cccChHhhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC------CCC
Q 012735 322 GRGHLV-KWAPQQEVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN------GLK 394 (457)
Q Consensus 322 ~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~------~~~ 394 (457)
+++..+ +..+..++|..+++ +||=- ++.+.|.+..++|+|....-.|.... .. |.-..... -.+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~-----~r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK-----ER-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTT-----TS-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhh-----cc-CCCCchHhhCCCceeCC
Confidence 344443 55567899989998 99988 44899999999999987765555422 11 44333211 247
Q ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 012735 395 REEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLV 443 (457)
Q Consensus 395 ~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 443 (457)
.++|.++|..++++. ..++++.++..+++-. -..+.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 899999999988772 3456666777777742 224444555444443
No 187
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=74.80 E-value=3.5 Score=40.62 Aligned_cols=88 Identities=14% Similarity=0.112 Sum_probs=61.7
Q ss_pred HHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHh
Q 012735 352 STLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWK 430 (457)
Q Consensus 352 s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~ 430 (457)
++.||+++|+|+|++=.. .-++-++. .--|...++ .-....+++++.++..| +.++.+.. +.-.++++
T Consensus 381 v~IEAMa~glPvvAt~~G----GP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~~~---~~G~~rV~ 449 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNG----GPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWARMG---KNGLKRVK 449 (495)
T ss_pred eeHHHHhcCCCEEEecCC----CceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHHHH---HHHHHHHH
Confidence 789999999999876443 44555666 366888877 33334799999999999 78765543 33344445
Q ss_pred cCCChHHHHHHHHHHHHhcc
Q 012735 431 QGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~ 450 (457)
+-.+.....+.+.+.+.++.
T Consensus 450 e~fs~~~~~~ri~~~~~~~~ 469 (495)
T KOG0853|consen 450 EMFSWQHYSERIASVLGKYL 469 (495)
T ss_pred HHHhHHHHHHHHHHHhHhcC
Confidence 65667778888877777554
No 188
>PRK09620 hypothetical protein; Provisional
Probab=74.79 E-value=11 Score=33.48 Aligned_cols=38 Identities=16% Similarity=0.145 Sum_probs=28.2
Q ss_pred CcEEEEEcCCCccCHH------------HHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHIS------------PMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~------------p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++|++...|+.-.+. -...||++|.++|++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4677777666444332 2578999999999999999864
No 189
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=74.47 E-value=8.2 Score=38.18 Aligned_cols=53 Identities=19% Similarity=0.325 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCccCHHH------------HHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEec
Q 012735 5 KGRRLVLFPLPLQGHISP------------MLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFI 60 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p------------~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i 60 (457)
+.+||++...|+.-.+.| ..+||+++..+|++||+++.+.... ...+++++.+
T Consensus 255 ~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~p~~v~~i~V 319 (475)
T PRK13982 255 AGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---DPQGVKVIHV 319 (475)
T ss_pred CCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---CCCCceEEEe
Confidence 457899988888877766 5799999999999999999863221 1145555554
No 190
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=73.65 E-value=5.8 Score=40.04 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=61.9
Q ss_pred CCCccccccC--h-HhhhcCCCCCCccccc---ChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCH
Q 012735 322 GRGHLVKWAP--Q-QEVLAHPAVGAFWTHN---GWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKR 395 (457)
Q Consensus 322 ~~~~~~~~vp--q-~~lL~~~~~~~~I~hg---G~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~ 395 (457)
.++.+.++.+ + ...+..+.+ +|.=+ |.++..||+.+|+|+| .......|... .=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 3455667777 3 346766666 87655 6779999999999999 33345566662 556666 378
Q ss_pred HHHHHHHHHHhcccc-hHHHHHHHHHHHHHHH
Q 012735 396 EEIEKTIRRVMVEKQ-GEEIRSRIFRLKEKAN 426 (457)
Q Consensus 396 ~~l~~ai~~il~~~~-~~~~~~~a~~l~~~~~ 426 (457)
.+|.+++..+|.+.+ -..+...|-+.++++.
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 899999999999832 2344555555555543
No 191
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=73.42 E-value=20 Score=31.31 Aligned_cols=37 Identities=14% Similarity=0.253 Sum_probs=31.0
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 8 RLVLFPLP--LQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 8 ~il~~~~~--~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
+|++++++ +-|-..-...|+-+|+.+|+.|.++-...
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 66666655 55999999999999999999999988763
No 192
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.93 E-value=58 Score=29.63 Aligned_cols=109 Identities=17% Similarity=0.175 Sum_probs=60.8
Q ss_pred ccccccChH---hhhcCCCCCCcccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC--CCCHHHHH
Q 012735 325 HLVKWAPQQ---EVLAHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN--GLKREEIE 399 (457)
Q Consensus 325 ~~~~~vpq~---~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~--~~~~~~l~ 399 (457)
....|+||+ .||..+++.++ -|--|..-|..+|+|.+ -++.-|-+|+.. .+ |-. -+++ ..-+...+
T Consensus 241 vklPFvpqddyd~LL~lcD~n~V---RGEDSFVRAq~agkPfl--WHIYpQdentHl-~K-Lea--Fldky~~~lp~~~a 311 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDFNLV---RGEDSFVRAQLAGKPFL--WHIYPQDENTHL-AK-LEA--FLDKYCPFLPPNTA 311 (370)
T ss_pred EEecCCcHhHHHHHHHhccccee---ecchHHHHHHHcCCCcE--EEecCCccccHH-HH-HHH--HHHHhCCCCCHHHH
Confidence 456999976 48888887333 47789999999999985 233445455432 11 111 1222 23333444
Q ss_pred HHHHHHhccc---c-----------hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 400 KTIRRVMVEK---Q-----------GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 400 ~ai~~il~~~---~-----------~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+++++...+. + -+..|+.|++++..+ ...-..++.++.+++++
T Consensus 312 ~alrt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l-------~~~~dlaekLvaF~ek~ 368 (370)
T COG4394 312 KALRTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHL-------IKNPDLAEKLVAFIEKI 368 (370)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHH-------ccCccHHHHHHHHHHHh
Confidence 4444443221 0 023555555555554 44566777777777654
No 193
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=72.32 E-value=55 Score=27.09 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=62.9
Q ss_pred EEcCCCccCHHH-HHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCC----CC-----CCccCHHHHHHH
Q 012735 11 LFPLPLQGHISP-MLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSA----SE-----ASTDDLVAFVSL 80 (457)
Q Consensus 11 ~~~~~~~gH~~p-~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~----~~-----~~~~~~~~~~~~ 80 (457)
.+.+...+.+.. +-.+|.+|.++|+.|.=++.............+....++.+-.. .. .-.-+...+-.
T Consensus 3 av~~~~~~~~d~lL~~~a~~L~~~G~rv~G~vQ~~~~~~~~~~~~m~l~dl~~G~~~~IsQ~LG~gs~gCrLD~~~La~- 81 (159)
T PF10649_consen 3 AVVYDDGGDIDALLAAFAARLRARGVRVAGLVQRNTADGDGGRCDMDLRDLPSGRRIRISQDLGPGSRGCRLDPGALAE- 81 (159)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCCccceEEEECCCCCEEEEeeccCCCCcccccCHHHHHH-
Confidence 344555566666 45689999999999988877421222222256667777654211 11 11112222111
Q ss_pred HHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCc---------chHHHHHhHcCCCeEEEecchHH
Q 012735 81 LNTKCLVPFRDCLAKLLADVEEEPIACLISDAML---------PFTQAVADSLKLPRIVLRTGGAS 137 (457)
Q Consensus 81 ~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~---------~~~~~~A~~l~iP~v~~~~~~~~ 137 (457)
. ...++.-+.. ++|++|.+-|- -..+..|-..|||+++..+....
T Consensus 82 ---A-----~~~l~~al~~----~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~V~~~~l 135 (159)
T PF10649_consen 82 ---A-----SAALRRALAE----GADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTAVPPRNL 135 (159)
T ss_pred ---H-----HHHHHHHHhc----CCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEEECHHHH
Confidence 0 1123333333 89999998763 11233456679999997766443
No 194
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=71.87 E-value=5.3 Score=34.06 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=31.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||++.-.|+.|=+.-.+.+.++|.++|++|+++.++
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~ 37 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSE 37 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEch
Confidence 4678887888777777779999999999999999886
No 195
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=71.55 E-value=33 Score=33.68 Aligned_cols=95 Identities=12% Similarity=0.112 Sum_probs=53.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcc
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCL 86 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (457)
.|+.+...+.. .+.+++.|.+.|-+|..+++........+ .-... +. .+...... .
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~~-~~~~~v~~---------------~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--LE-MLGVEVKY---------------R 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--HH-hcCCCcee---------------c
Confidence 47777776665 88999999999999999877521000000 00000 00 00000000 0
Q ss_pred hhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEe
Q 012735 87 VPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLR 132 (457)
Q Consensus 87 ~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~ 132 (457)
..+.+.++.+.+. +||++|.... +..+|+++|||++.+.
T Consensus 342 ~dl~~~~~~l~~~----~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDDMEAVLEF----EPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHHHHHHhhC----CCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 1122222333222 9999998843 5668999999999965
No 196
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.28 E-value=26 Score=30.94 Aligned_cols=48 Identities=13% Similarity=0.039 Sum_probs=32.9
Q ss_pred HHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcc---hHHHHHhHcCCCeEEE
Q 012735 78 VSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLP---FTQAVADSLKLPRIVL 131 (457)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~---~~~~~A~~l~iP~v~~ 131 (457)
+......-...++.+++++. +-++.+.|..+. -+..+|..+|||++.=
T Consensus 129 mGs~~tsn~~aM~~~m~~Lk------~r~l~flDs~T~a~S~a~~iAk~~gVp~~~r 179 (250)
T COG2861 129 MGSRFTSNEDAMEKLMEALK------ERGLYFLDSGTIANSLAGKIAKEIGVPVIKR 179 (250)
T ss_pred hhhhhcCcHHHHHHHHHHHH------HCCeEEEcccccccchhhhhHhhcCCceeee
Confidence 34333444555556666776 459999998874 3456899999999873
No 197
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=71.19 E-value=54 Score=30.89 Aligned_cols=81 Identities=11% Similarity=0.100 Sum_probs=60.8
Q ss_pred CCCc-cccccC---hHhhhcCCCCCCcccc--cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCC
Q 012735 322 GRGH-LVKWAP---QQEVLAHPAVGAFWTH--NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLK 394 (457)
Q Consensus 322 ~~~~-~~~~vp---q~~lL~~~~~~~~I~h--gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~ 394 (457)
+|+. +.+++| +.++|+.++++.|.|. =|.|++.-.|..|+|+++--. --.-+-+.+ .|+-+.... .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~~----np~~~~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSRD----NPFWQDLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEecC----ChHHHHHHh-CCCeEEeccccCC
Confidence 4565 458998 5679999999666664 489999999999999976432 233445566 388877765 899
Q ss_pred HHHHHHHHHHHhc
Q 012735 395 REEIEKTIRRVMV 407 (457)
Q Consensus 395 ~~~l~~ai~~il~ 407 (457)
...|+++=+.+..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887764
No 198
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=70.96 E-value=41 Score=30.49 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHC---CCeEEEEeCCCCCCCCC----CCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhHHHHHH
Q 012735 22 PMLQLANILHSQ---GFTITIIHTSFNSPNPS----SHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPFRDCLA 94 (457)
Q Consensus 22 p~l~la~~L~~~---Gh~Vt~~~~~~~~~~~~----~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (457)
-+.+|+++|.+. |++|+++.+..+.+-.. -...++...+.++. ..-...+.. ...- .+.
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg~ghaiT~~~pl~~~~~~~~~---yav~GTPaD-------CV~l----al~ 80 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSGVGHCISYTHPMMIAELGPRR---FAAEGSPAD-------CVLA----ALY 80 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCCCcccccCCCCeEEEEeCCCe---EEEcCchHH-------HHHH----HHH
Confidence 355677777663 47999999875543322 11345555543211 111111111 1111 122
Q ss_pred HHhhccCCCCeeEEEeCCC-------------cchHHHHHhHcCCCeEEEec
Q 012735 95 KLLADVEEEPIACLISDAM-------------LPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 95 ~l~~~~~~~~pDlvi~D~~-------------~~~~~~~A~~l~iP~v~~~~ 133 (457)
.++.. . +||+||+..- +..+..-|...|||.|.++.
T Consensus 81 ~~~~~--~-~pDlVvSGIN~G~N~g~~v~ySGTVgAA~Ea~~~GiPsiA~S~ 129 (261)
T PRK13931 81 DVMKD--A-PPDLVLSGVNRGNNSAENVLYSGTVGGAMEAALQGLPAIALSQ 129 (261)
T ss_pred HhcCC--C-CCCEEEECCccCCCCCcCcccchhHHHHHHHHhcCCCeEEEEe
Confidence 23221 1 8999997532 13344456678999999875
No 199
>PRK05920 aromatic acid decarboxylase; Validated
Probab=70.91 E-value=6.3 Score=34.12 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.+||++.-.|+.+ ..-...+.+.|.+.||+|+++.++
T Consensus 2 ~~krIllgITGsia-a~ka~~lvr~L~~~g~~V~vi~T~ 39 (204)
T PRK05920 2 KMKRIVLAITGASG-AIYGVRLLECLLAADYEVHLVISK 39 (204)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEEECh
Confidence 45778777666644 468899999999999999999986
No 200
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=70.55 E-value=69 Score=33.79 Aligned_cols=102 Identities=17% Similarity=0.273 Sum_probs=60.7
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHH-hc
Q 012735 8 RLVLFPLPL-QGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNT-KC 85 (457)
Q Consensus 8 ~il~~~~~~-~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~ 85 (457)
.|.+.+..+ .|=..-.+.|++.|.++|.+|-++=+-.. + +++ .......+.. ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~--------~----p~~------------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ--------P----PLT------------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc--------C----CCC------------HHHHHHHHhccCC
Confidence 566665554 59999999999999999999999875321 1 010 0110011111 11
Q ss_pred chhHHHHHHHHhhccCCCCeeEEEeCCCcc---------hHHHHHhHcCCCeEEEecch
Q 012735 86 LVPFRDCLAKLLADVEEEPIACLISDAMLP---------FTQAVADSLKLPRIVLRTGG 135 (457)
Q Consensus 86 ~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~---------~~~~~A~~l~iP~v~~~~~~ 135 (457)
...+..+++.+.+ ... +.|+||.|.... ....+|+.++.|++.+...-
T Consensus 60 ~~~~~~I~~~~~~-l~~-~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHA-LAK-DCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHH-hcc-CCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 2222333333322 112 789999776532 23567999999999987654
No 201
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=68.41 E-value=46 Score=32.64 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=22.8
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEEec
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~ 133 (457)
+||++|... .+..+|+++|||++.+..
T Consensus 350 ~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 350 RPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 999999883 467799999999998654
No 202
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=67.88 E-value=24 Score=30.08 Aligned_cols=55 Identities=18% Similarity=0.246 Sum_probs=36.6
Q ss_pred cEEEEEc---CCC-ccCH-HHHHHHHHHHHHCCCeEEEEeCCCCC-CCCCCCCCeeEEecC
Q 012735 7 RRLVLFP---LPL-QGHI-SPMLQLANILHSQGFTITIIHTSFNS-PNPSSHPHLTFHFIQ 61 (457)
Q Consensus 7 ~~il~~~---~~~-~gH~-~p~l~la~~L~~~Gh~Vt~~~~~~~~-~~~~~~~g~~~~~i~ 61 (457)
+||.++. .|+ +|=+ .-.-.|+..|+++||+|++.+..... .....+.|++.+.+|
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4676665 333 3444 34556888888999999999986433 233445788888876
No 203
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=67.77 E-value=17 Score=35.80 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.2
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEEec
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~ 133 (457)
+||++|.+.. ...+|+++|+|++.++.
T Consensus 371 ~pdliig~~~---~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 371 PVDLLIGNSH---GRYLARDLGIPLVRVGF 397 (428)
T ss_pred CCCEEEECch---hHHHHHhcCCCEEEecC
Confidence 8999999963 46788899999987643
No 204
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.58 E-value=12 Score=32.33 Aligned_cols=40 Identities=13% Similarity=0.019 Sum_probs=36.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++.+|++.+.++-.|-....-++..|..+|++|+++...
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 3467999999999999999999999999999999999875
No 205
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=66.81 E-value=12 Score=29.02 Aligned_cols=36 Identities=31% Similarity=0.416 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+++.+.+..-|-.-...++..|.++||+|.++...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~ 37 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDAN 37 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCC
Confidence 788999999999999999999999999999988653
No 206
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.31 E-value=13 Score=32.17 Aligned_cols=39 Identities=18% Similarity=0.174 Sum_probs=35.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++.||++.+.++-.|-....-++..|...|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 467999999999999999999999999999999888754
No 207
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=64.87 E-value=1.4e+02 Score=28.94 Aligned_cols=96 Identities=18% Similarity=0.121 Sum_probs=56.8
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccc---cccChHhhh
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLV---KWAPQQEVL 336 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~---~~vpq~~lL 336 (457)
.++|.|-+|+=. ....-...+.+.|++.++++++--..+. + ....|++-..+.+. +.-.+. |-
T Consensus 183 ~~kp~I~iTmfG---vTTp~V~~~~~~Le~~G~Ev~VFHAtG~--G--------G~aME~Li~~G~~~~VlDlTttE-l~ 248 (403)
T PF06792_consen 183 EDKPLIGITMFG---VTTPCVDAIRERLEEEGYEVLVFHATGT--G--------GRAMERLIREGQFDGVLDLTTTE-LA 248 (403)
T ss_pred CCCcEEEEECCC---CcHHHHHHHHHHHHhcCCeEEEEcCCCC--c--------hHHHHHHHHcCCcEEEEECcHHH-HH
Confidence 356778777522 2346677788888888998876655431 1 11222222222332 333322 11
Q ss_pred cCCCCCCcccccChhHHHHHHhhCCcccccCccch
Q 012735 337 AHPAVGAFWTHNGWNSTLESICEGIPMICMPCFTD 371 (457)
Q Consensus 337 ~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~D 371 (457)
..+-+=|..+|-+=.-.|...|+|+|+.|-..|
T Consensus 249 --d~l~GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 249 --DELFGGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred --HHHhCCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 111123567888889999999999999997544
No 208
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=64.34 E-value=16 Score=38.78 Aligned_cols=111 Identities=14% Similarity=0.146 Sum_probs=66.7
Q ss_pred cccccChHh---hhcCCCCCCcccc---cCh-hHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHH
Q 012735 326 LVKWAPQQE---VLAHPAVGAFWTH---NGW-NSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEI 398 (457)
Q Consensus 326 ~~~~vpq~~---lL~~~~~~~~I~h---gG~-~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l 398 (457)
+.+++++.+ +++.+++ |+.- -|+ .++.|++.+|+|-...|...+--.-+. + +.-|+.++. .+++++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 336777654 6777887 6654 254 478999999776333333322211122 2 233666666 689999
Q ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012735 399 EKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSL 449 (457)
Q Consensus 399 ~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (457)
+++|.++|.+.. +..+++.+++.+.++ ..+...-++.+++.+++.
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELREA 463 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHH
Confidence 999999998511 233444444444443 355777777777777665
No 209
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=64.32 E-value=79 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=22.7
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEEec
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~ 133 (457)
+||++|.... ...+|+++|||++.+..
T Consensus 377 ~pDliiG~s~---~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 377 PVDLLIGNTY---GKYIARDTDIPLVRFGF 403 (435)
T ss_pred CCCEEEECcc---HHHHHHHhCCCEEEeeC
Confidence 8999999863 67899999999987653
No 210
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=63.89 E-value=47 Score=31.29 Aligned_cols=102 Identities=13% Similarity=0.196 Sum_probs=56.4
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhcchhH--
Q 012735 12 FPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKCLVPF-- 89 (457)
Q Consensus 12 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 89 (457)
++.|+.|-+--...|++.|.++|+.|.+++-.+..... + ....+.++- ......|-.-++..... +.-.+
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~----~-~~~~v~~~~--~~~~~GDEp~lla~~~~-~~V~V~~ 114 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGRKSK----G-EPILVSDGS--DAEEVGDEPLLLARKLP-VPVIVGP 114 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCC----C-CeEEEeCCC--ChhhhcCHHHHHHHhcC-CcEEEeC
Confidence 34778899999999999999999999999986432222 2 122333222 12222232233332222 21111
Q ss_pred --HHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcC
Q 012735 90 --RDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLK 125 (457)
Q Consensus 90 --~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~ 125 (457)
....+.++++. .+|+||.|-.+- -..+++-+.
T Consensus 115 dR~~~~~~~~~~~---~~dviilDDGfQ-h~~L~rDl~ 148 (326)
T PF02606_consen 115 DRVAAARAALKEF---PADVIILDDGFQ-HRRLKRDLD 148 (326)
T ss_pred cHHHHHHHHHHHC---CCCEEEEcCCcc-cccccCCcE
Confidence 12344454443 689999998653 223444333
No 211
>PRK14099 glycogen synthase; Provisional
Probab=63.51 E-value=13 Score=37.28 Aligned_cols=41 Identities=12% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCcEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 5 KGRRLVLFPLP------LQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 5 ~~~~il~~~~~------~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
++|||++++.- +.|=-.-.-+|.++|+++||+|.++.+.+.
T Consensus 2 ~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~ 48 (485)
T PRK14099 2 TPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYP 48 (485)
T ss_pred CCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 56899998832 223344567889999999999999999743
No 212
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=63.46 E-value=12 Score=30.14 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=34.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.+.||++.+.+..||-.-.--+++.|+..|.+|.....
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 57899999999889999999999999999999988665
No 213
>PRK12342 hypothetical protein; Provisional
Probab=63.31 E-value=13 Score=33.41 Aligned_cols=31 Identities=16% Similarity=0.100 Sum_probs=25.1
Q ss_pred CeeEEEeCCCc------chHHHHHhHcCCCeEEEecc
Q 012735 104 PIACLISDAML------PFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 104 ~pDlvi~D~~~------~~~~~~A~~l~iP~v~~~~~ 134 (457)
+||+|++...+ ..+..+|+.||+|++.....
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 79999986544 33789999999999997654
No 214
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=63.07 E-value=12 Score=36.22 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=26.2
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEE
Q 012735 8 RLVLFP-LPLQGHISPMLQLANILHSQGFTITII 40 (457)
Q Consensus 8 ~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~ 40 (457)
+|++.. ..+.|-+.-.+.|.++|++||++|.-+
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 445544 445599999999999999999999754
No 215
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=62.75 E-value=30 Score=32.38 Aligned_cols=33 Identities=15% Similarity=0.394 Sum_probs=29.7
Q ss_pred EcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 12 FPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 12 ~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
++.|+.|-+--.+.||++|++||..|-+++-.+
T Consensus 55 ltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGY 87 (336)
T COG1663 55 LTVGGTGKTPVVIWLAEALQARGVRVGVVSRGY 87 (336)
T ss_pred EEECCCCcCHHHHHHHHHHHhcCCeeEEEecCc
Confidence 347888999999999999999999999999864
No 216
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=62.55 E-value=34 Score=28.80 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHC
Q 012735 10 VLFPLPLQGHISPMLQLANILHSQ 33 (457)
Q Consensus 10 l~~~~~~~gH~~p~l~la~~L~~~ 33 (457)
.++-.|+.||..=|+.|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344456779999999999999766
No 217
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=62.44 E-value=38 Score=33.58 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=28.7
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 8 RLVLFPLP-LQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 8 ~il~~~~~-~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+|++.... +-|-..-...|++.|+++|++|..+-+
T Consensus 5 ~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 5 ALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 56666544 449999999999999999999998866
No 218
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=62.40 E-value=11 Score=35.25 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=29.9
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+ .+++||+++..|+.| ..+|..|.+.||+|+++...
T Consensus 1 ~~-~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 1 MD-SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CC-CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeC
Confidence 44 467899999887765 45778899999999999874
No 219
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=62.35 E-value=28 Score=34.25 Aligned_cols=36 Identities=11% Similarity=-0.018 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
+.||||++..+++-| +|++.|++-++.+.+++.+.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 569999999999888 799999999876666665544
No 220
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=62.32 E-value=15 Score=33.14 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=34.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
...++|...+|.|-..-..+||.+|..+|+.|+|++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 45789999999999999999999999889999999985
No 221
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=62.25 E-value=11 Score=33.50 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=18.3
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 012735 23 MLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 23 ~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..+||++|.++||+|+++...
T Consensus 29 G~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 29 GKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred HHHHHHHHHhCCCEEEEEECc
Confidence 578899999999999999753
No 222
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=61.70 E-value=6.3 Score=32.57 Aligned_cols=31 Identities=19% Similarity=0.320 Sum_probs=25.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
||.++..|..|+ ++|..|.++||+|++.+..
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 567777776665 8999999999999999986
No 223
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=61.20 E-value=25 Score=25.75 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=15.4
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 012735 23 MLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 23 ~l~la~~L~~~Gh~Vt~~~~ 42 (457)
++++++.|.+.|+++ ++|.
T Consensus 2 ~~~~~~~l~~lG~~i-~AT~ 20 (90)
T smart00851 2 LVELAKRLAELGFEL-VATG 20 (90)
T ss_pred HHHHHHHHHHCCCEE-EEcc
Confidence 468999999999997 4554
No 224
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=61.19 E-value=12 Score=31.86 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=30.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
+||++...|+.|=+. ...+.+.|.++|++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHCCCEEEEEEChh
Confidence 578887777766554 7999999999999999999863
No 225
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=60.89 E-value=30 Score=29.37 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCe--EEEEeC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFT--ITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~--Vt~~~~ 42 (457)
|||+|+.+++. .-+..+.++|.+++|+ +..+.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 68888877664 5566778899999998 444443
No 226
>PRK14098 glycogen synthase; Provisional
Probab=60.84 E-value=18 Score=36.34 Aligned_cols=42 Identities=14% Similarity=0.305 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 4 RKGRRLVLFPLP------LQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 4 ~~~~~il~~~~~------~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
+..|||++++.- +.|=-.-+-+|.++|+++||+|.++.+.+.
T Consensus 3 ~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~ 50 (489)
T PRK14098 3 RRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYG 50 (489)
T ss_pred CCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 456999999832 223334567889999999999999999753
No 227
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=60.00 E-value=1e+02 Score=27.54 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=29.2
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFP-LPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+|.+.. -||-|-..-..+||..|++.|+.|..+--.
T Consensus 3 ~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 3 VIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 455554 456699999999999999999999987643
No 228
>PRK00784 cobyric acid synthase; Provisional
Probab=59.22 E-value=74 Score=31.99 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.6
Q ss_pred EEEEEcCCC-ccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 8 RLVLFPLPL-QGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 8 ~il~~~~~~-~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.|++....+ -|-..-...|++.|+++|++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 466665554 49999999999999999999987655
No 229
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=59.11 E-value=8.5 Score=32.32 Aligned_cols=97 Identities=9% Similarity=0.133 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC--------CCCCCCeeEEecCCCCCCCCCCccCHHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPN--------PSSHPHLTFHFIQENLSASEASTDDLVA 76 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~--------~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 76 (457)
++..|.+++..+.|-....+.+ +|.+.||...++...|.+.. ..+.+++++.....++........ .+
T Consensus 2 ~~G~i~vytG~GKGKTTAAlGl--alRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~--~~ 77 (172)
T PF02572_consen 2 ERGLIQVYTGDGKGKTTAALGL--ALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEE--ED 77 (172)
T ss_dssp ----EEEEESSSS-HHHHHHHH--HHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGGHH--HH
T ss_pred CCcEEEEEeCCCCCchHHHHHH--HHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH--HH
Confidence 4556788888888887755555 45555554444444444431 122355777777654432221111 11
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCc
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAML 114 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~ 114 (457)
...+...++...+.+... .+|+||.|...
T Consensus 78 -----~~~~~~~~~~a~~~i~~~----~~dlvILDEi~ 106 (172)
T PF02572_consen 78 -----RAAAREGLEEAKEAISSG----EYDLVILDEIN 106 (172)
T ss_dssp -----HHHHHHHHHHHHHHTT-T----T-SEEEEETHH
T ss_pred -----HHHHHHHHHHHHHHHhCC----CCCEEEEcchH
Confidence 233333333322223222 89999999754
No 230
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=58.98 E-value=63 Score=27.55 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=55.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC--------CCC-CCCeeEEecCCCCCCCCCCccCHHH
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPN--------PSS-HPHLTFHFIQENLSASEASTDDLVA 76 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~--------~~~-~~g~~~~~i~~~~~~~~~~~~~~~~ 76 (457)
+.-|.+++..+.|-....+.+|-+-.-+|..|.++- |.+.. ..+ ..+++|+..++++.........
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQ--FiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~~--- 102 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQ--FIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDREA--- 102 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEE--EeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcHH---
Confidence 344778888888887776666655555566665543 22111 111 1457888888766544322111
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcc
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLP 115 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~ 115 (457)
.. ..+...+....+.+.+. ++|+||.|.+++
T Consensus 103 ---d~-~aa~~~w~~a~~~l~~~----~ydlviLDEl~~ 133 (198)
T COG2109 103 ---DI-AAAKAGWEHAKEALADG----KYDLVILDELNY 133 (198)
T ss_pred ---HH-HHHHHHHHHHHHHHhCC----CCCEEEEehhhH
Confidence 11 33444444444445433 899999998764
No 231
>PLN02939 transferase, transferring glycosyl groups
Probab=58.37 E-value=20 Score=38.67 Aligned_cols=42 Identities=17% Similarity=0.342 Sum_probs=31.7
Q ss_pred CCCcEEEEEcCC------CccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 4 RKGRRLVLFPLP------LQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 4 ~~~~~il~~~~~------~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
.+++||+|++.- ..|=-.-.-+|.++|++.||+|.++++.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 467999999832 123334466889999999999999999754
No 232
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=58.01 E-value=16 Score=30.84 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=28.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||++.-.|+. ...-...+.+.|.++|++|.++.++
T Consensus 1 k~I~lgvtGs~-~a~~~~~ll~~L~~~g~~V~vi~T~ 36 (177)
T TIGR02113 1 KKILLAVTGSI-AAYKAADLTSQLTKLGYDVTVLMTQ 36 (177)
T ss_pred CEEEEEEcCHH-HHHHHHHHHHHHHHCCCEEEEEECh
Confidence 36666666664 4556679999999999999999986
No 233
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=57.16 E-value=10 Score=35.84 Aligned_cols=33 Identities=18% Similarity=0.254 Sum_probs=25.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGF-TITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~~ 43 (457)
..+|+++..++-| ..+|+.|++.|+ +++++-..
T Consensus 24 ~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 24 EKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 4679999888765 688999999998 66666543
No 234
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=57.13 E-value=64 Score=31.80 Aligned_cols=88 Identities=23% Similarity=0.271 Sum_probs=53.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHHHHHhc
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSLLNTKC 85 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (457)
.+|+++...+ .....+++.|.+.|-+|..+.......... .++. ......+..
T Consensus 311 Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~~--------~~~~----~~~~~~D~~---------- 363 (432)
T TIGR01285 311 GKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLLQ--------KLPV----ETVVIGDLE---------- 363 (432)
T ss_pred CCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHH--------hCCc----CcEEeCCHH----------
Confidence 4677766533 467899999999999998887753311110 0110 000001111
Q ss_pred chhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEe
Q 012735 86 LVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLR 132 (457)
Q Consensus 86 ~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~ 132 (457)
.+++++++. ++|++|.+.. +..+|+++|||++.+.
T Consensus 364 ------~l~~~i~~~---~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 364 ------DLEDLACAA---GADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred ------HHHHHHhhc---CCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 123333333 8999998863 4779999999998754
No 235
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=56.97 E-value=25 Score=29.07 Aligned_cols=35 Identities=14% Similarity=0.030 Sum_probs=27.7
Q ss_pred EEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEE
Q 012735 264 VIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVV 298 (457)
Q Consensus 264 vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~ 298 (457)
.+|+++||....+...++..+.++.+.+..-++.+
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 59999999999888888889999988764334443
No 236
>PRK08760 replicative DNA helicase; Provisional
Probab=55.96 E-value=30 Score=34.53 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=31.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHS-QGFTITIIHTSF 44 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~ 44 (457)
=+++...|+.|-..-.+.+|...+. .|+.|.|++.+.
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 3677778899999999999998875 499999999874
No 237
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=55.91 E-value=21 Score=28.02 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
||++.+.++-.|..-..-++.-|...|++|.++...
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 688999999999999999999999999999999874
No 238
>PRK06321 replicative DNA helicase; Provisional
Probab=55.86 E-value=31 Score=34.40 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=31.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHS-QGFTITIIHTSF 44 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~ 44 (457)
|++...|+.|-..-.+.+|...+. .|..|.|++.+.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 567778899999999999999874 599999999873
No 239
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=55.77 E-value=71 Score=25.01 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=37.0
Q ss_pred cccccCCCCCCcEEEEEecccccC-CHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhH
Q 012735 252 CIAWLDKQAPKSVIYVSFGSIAAV-SEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGF 316 (457)
Q Consensus 252 l~~~l~~~~~~~vv~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~ 316 (457)
..+|+..+ -+.+|.|-.... .+..+..+++.+.+.+...+..-.+.. ...+|+.+
T Consensus 36 ~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~------~~~iP~~~ 91 (123)
T PF07905_consen 36 PSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY------LDEIPEEI 91 (123)
T ss_pred HHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc------cccCCHHH
Confidence 45787653 388888877775 567788899999988876554433322 34577665
No 240
>PRK06904 replicative DNA helicase; Validated
Probab=55.48 E-value=26 Score=34.99 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=31.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHS-QGFTITIIHTSFN 45 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~~~ 45 (457)
|++..-|+.|-..-++.+|...+. .|+.|.|++.+..
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 667778899999999999998875 5999999998743
No 241
>PRK13768 GTPase; Provisional
Probab=55.36 E-value=69 Score=28.89 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.+++...++.|-..-...++..|..+|++|.++...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D 39 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLD 39 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECC
Confidence 3566777778899999999999999999999998765
No 242
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=55.29 E-value=22 Score=32.12 Aligned_cols=31 Identities=13% Similarity=0.096 Sum_probs=25.2
Q ss_pred CeeEEEeCCCc------chHHHHHhHcCCCeEEEecc
Q 012735 104 PIACLISDAML------PFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 104 ~pDlvi~D~~~------~~~~~~A~~l~iP~v~~~~~ 134 (457)
.||+|++...+ .-+..+|+.||+|++.+...
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 79999976543 35788999999999997665
No 243
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=55.14 E-value=8.4 Score=32.55 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=41.1
Q ss_pred cCCCCCCcccccChhHHHHHHhhCCcccccCccc-----------------------hhhHHHHHHHhhhccceecCCCC
Q 012735 337 AHPAVGAFWTHNGWNSTLESICEGIPMICMPCFT-----------------------DQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 337 ~~~~~~~~I~hgG~~s~~eal~~gvP~v~~P~~~-----------------------DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
.+..+..+|++||...+..... ++|+|-+|... +.......+.+.+|+-+....--
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~ 109 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD 109 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC
Confidence 3344455999999999988887 99999999842 23333555555434433332234
Q ss_pred CHHHHHHHHHHHhcc
Q 012735 394 KREEIEKTIRRVMVE 408 (457)
Q Consensus 394 ~~~~l~~ai~~il~~ 408 (457)
+.+++...|.++..+
T Consensus 110 ~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 110 SEEEIEAAIKQAKAE 124 (176)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 677777777777654
No 244
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=55.09 E-value=26 Score=30.67 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=36.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++.||++.+.++-.|-....-++-.|..+|++|.++...
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 567999999999999999999999999999999999875
No 245
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=55.08 E-value=1.1e+02 Score=25.45 Aligned_cols=29 Identities=14% Similarity=0.214 Sum_probs=23.0
Q ss_pred CCCCCCcccccCh------hHHHHHHhhCCcccccCc
Q 012735 338 HPAVGAFWTHNGW------NSTLESICEGIPMICMPC 368 (457)
Q Consensus 338 ~~~~~~~I~hgG~------~s~~eal~~gvP~v~~P~ 368 (457)
.+.+ +++|+|- +.+.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 3555 8888884 478899999999999963
No 246
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=55.06 E-value=18 Score=30.76 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=30.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHH-CCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHS-QGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~ 43 (457)
+||++.-.|+.| ..-...++++|.+ .||+|.++.++
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~ 38 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQ 38 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECH
Confidence 477777777766 6669999999999 59999999997
No 247
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=54.46 E-value=23 Score=31.59 Aligned_cols=94 Identities=10% Similarity=0.093 Sum_probs=50.1
Q ss_pred CCcEEEEEeccccc---CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCC-----CccccccC-
Q 012735 261 PKSVIYVSFGSIAA---VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGR-----GHLVKWAP- 331 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~-----~~~~~~vp- 331 (457)
+++.|.+..|+... .+.+.+.++++.+.+.+.++++..+... .-....+...+. +.+.+-.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE---------QEKEIADQIAAGLQNPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH---------HHHHHHHHHHTTHTTTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH---------HHHHHHHHHHHhcccceEeecCCCCH
Confidence 45667777777664 7788899999999887755443332211 001111111111 11222222
Q ss_pred -h-HhhhcCCCCCCcccccChhHHHHHHhhCCccccc
Q 012735 332 -Q-QEVLAHPAVGAFWTHNGWNSTLESICEGIPMICM 366 (457)
Q Consensus 332 -q-~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~ 366 (457)
+ .++++++++ +|+. -.|.+.=|...|+|+|++
T Consensus 175 ~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 2 468888887 8854 567888899999999988
No 248
>PRK05595 replicative DNA helicase; Provisional
Probab=53.81 E-value=47 Score=32.91 Aligned_cols=36 Identities=17% Similarity=0.323 Sum_probs=30.6
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILH-SQGFTITIIHTSF 44 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~ 44 (457)
+++...|+.|-..-.+.+|..++ +.|+.|.|++.+.
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 56677889999999999998876 5699999999874
No 249
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=53.77 E-value=63 Score=26.83 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=27.1
Q ss_pred cCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 13 PLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 13 ~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+-|+-|-..-...||..|+++|+.|.++-..
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3567799999999999999999999998765
No 250
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=53.59 E-value=1.3e+02 Score=24.86 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=68.8
Q ss_pred EEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCccc
Q 012735 267 VSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWT 346 (457)
Q Consensus 267 vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~ 346 (457)
|-+||.. +....++..+.|+..+...-+.+... .+.|+.+.+.. -+.. =.+.++ +|.
T Consensus 3 IimGS~S--D~~~~~~a~~~L~~~gi~~dv~V~Sa--------HRtp~~~~~~~----------~~a~-~~g~~v--iIa 59 (156)
T TIGR01162 3 IIMGSDS--DLPTMKKAADILEEFGIPYELRVVSA--------HRTPELMLEYA----------KEAE-ERGIKV--IIA 59 (156)
T ss_pred EEECcHh--hHHHHHHHHHHHHHcCCCeEEEEECc--------ccCHHHHHHHH----------HHHH-HCCCeE--EEE
Confidence 3456666 56778888888888887765555443 34666653211 1100 012344 887
Q ss_pred ccChh----HHHHHHhhCCcccccCccchh-hHHHHHHHh----hhcc--ceecCC-CCCHHHHHHHHHHHhcccchHHH
Q 012735 347 HNGWN----STLESICEGIPMICMPCFTDQ-KVNARYVSD----VWKV--GLQLEN-GLKREEIEKTIRRVMVEKQGEEI 414 (457)
Q Consensus 347 hgG~~----s~~eal~~gvP~v~~P~~~DQ-~~na~~v~~----~lG~--g~~l~~-~~~~~~l~~ai~~il~~~~~~~~ 414 (457)
-+|.. ++..+ ..-+|+|.+|....- ......+.- . |+ +...-. ..+...++..| --+.| +.+
T Consensus 60 ~AG~aa~Lpgvva~-~t~~PVIgvP~~~~~l~G~daLlS~vqmP~-gvpvatv~I~~~~nAa~~AaqI-l~~~d---~~l 133 (156)
T TIGR01162 60 GAGGAAHLPGMVAA-LTPLPVIGVPVPSKALSGLDSLLSIVQMPS-GVPVATVAIGNAGNAALLAAQI-LGIKD---PEL 133 (156)
T ss_pred eCCccchhHHHHHh-ccCCCEEEecCCccCCCCHHHHHHHhcCCC-CCeeEEEEcCChhHHHHHHHHH-HcCCC---HHH
Confidence 77753 23322 236899999985321 111111111 1 32 222211 23344444333 22455 688
Q ss_pred HHHHHHHHHHHHH
Q 012735 415 RSRIFRLKEKANH 427 (457)
Q Consensus 415 ~~~a~~l~~~~~~ 427 (457)
+++.+..+++.+.
T Consensus 134 ~~kl~~~r~~~~~ 146 (156)
T TIGR01162 134 AEKLKEYRENQKE 146 (156)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=53.31 E-value=28 Score=29.45 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++..+++...+|.|-..-..++++++..+|+.|.|+...
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~ 84 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITAS 84 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence 356788999899999999999999999999999998763
No 252
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=53.11 E-value=40 Score=32.04 Aligned_cols=96 Identities=13% Similarity=0.069 Sum_probs=59.0
Q ss_pred CCcEEEEEecccc--c--CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcC----C-CccccccC
Q 012735 261 PKSVIYVSFGSIA--A--VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDG----R-GHLVKWAP 331 (457)
Q Consensus 261 ~~~vv~vs~Gs~~--~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~----~-~~~~~~vp 331 (457)
+++.|.+..|+.. . .+.+.+.++++.+...+.++++. +++. .....+.+.+..+. + +-+.+-.+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~-Gg~~------e~~~~~~i~~~~~~~~~~~~~~l~g~~s 251 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLF-GSAK------DHEAGNEILAALNTEQQAWCRNLAGETQ 251 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEE-eCHH------hHHHHHHHHHhcccccccceeeccCCCC
Confidence 5578888888852 2 77888899998887656665544 3322 01122233222221 1 12233333
Q ss_pred --h-HhhhcCCCCCCcccccChhHHHHHHhhCCccccc
Q 012735 332 --Q-QEVLAHPAVGAFWTHNGWNSTLESICEGIPMICM 366 (457)
Q Consensus 332 --q-~~lL~~~~~~~~I~hgG~~s~~eal~~gvP~v~~ 366 (457)
+ .++++++++ ||+ +-.|-+.=|.+.|+|+|.+
T Consensus 252 L~el~ali~~a~l--~I~-nDTGp~HlAaA~g~P~val 286 (348)
T PRK10916 252 LEQAVILIAACKA--IVT-NDSGLMHVAAALNRPLVAL 286 (348)
T ss_pred HHHHHHHHHhCCE--EEe-cCChHHHHHHHhCCCEEEE
Confidence 3 358888887 885 4577889999999999876
No 253
>PRK06849 hypothetical protein; Provisional
Probab=52.50 E-value=28 Score=33.77 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++++||+..... ...+.+|+.|.++||+|.++...
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCC
Confidence 678888885443 36899999999999999998774
No 254
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=52.18 E-value=22 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++|+++..|. .....++.|.+.||+|+++.+.
T Consensus 12 ~~~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 12 HNKVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CCCEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 356788876654 3477899999999999999754
No 255
>PRK11519 tyrosine kinase; Provisional
Probab=51.75 E-value=3.3e+02 Score=29.06 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCcEEEEEc--CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFP--LPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~--~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++.|+++++ .++-|-..-...||..|+..|+.|.++-..
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~D 564 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCD 564 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 344555555 456699999999999999999999998765
No 256
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=51.23 E-value=1.8e+02 Score=28.86 Aligned_cols=34 Identities=9% Similarity=0.114 Sum_probs=27.8
Q ss_pred EEEEcCCC-ccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 9 LVLFPLPL-QGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 9 il~~~~~~-~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|++....+ -|-..-...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 55554444 58999999999999999999998865
No 257
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=51.07 E-value=13 Score=32.94 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=25.3
Q ss_pred CeeEEE-eCCCc-chHHHHHhHcCCCeEEEecch
Q 012735 104 PIACLI-SDAML-PFTQAVADSLKLPRIVLRTGG 135 (457)
Q Consensus 104 ~pDlvi-~D~~~-~~~~~~A~~l~iP~v~~~~~~ 135 (457)
-||+++ .|+.. --+..=|.++|||+|.+....
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 399885 77765 567788999999999987663
No 258
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=51.05 E-value=17 Score=30.85 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=26.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
||++.-.|+.|-.. ...+.++|+++|++|.++.++
T Consensus 1 ~illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~ 35 (181)
T TIGR00421 1 RIVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISD 35 (181)
T ss_pred CEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECc
Confidence 35555555555544 488999999999999999997
No 259
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=51.01 E-value=1.8e+02 Score=28.62 Aligned_cols=26 Identities=27% Similarity=0.483 Sum_probs=22.2
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEEe
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVLR 132 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~~ 132 (457)
+||++|.+.. ...+|+++|||++.+.
T Consensus 372 ~~dliiG~s~---~~~~a~~~~ip~~~~~ 397 (429)
T cd03466 372 KIDVLIGNSY---GRRIAEKLGIPLIRIG 397 (429)
T ss_pred CCCEEEECch---hHHHHHHcCCCEEEec
Confidence 8999999964 5689999999998764
No 260
>PRK04940 hypothetical protein; Provisional
Probab=50.74 E-value=43 Score=28.37 Aligned_cols=34 Identities=0% Similarity=-0.030 Sum_probs=27.6
Q ss_pred CeeEEEeCCCc-chHHHHHhHcCCCeEEEecchHH
Q 012735 104 PIACLISDAML-PFTQAVADSLKLPRIVLRTGGAS 137 (457)
Q Consensus 104 ~pDlvi~D~~~-~~~~~~A~~l~iP~v~~~~~~~~ 137 (457)
+++++|...+- +++..+|+++|+|.|.+.|....
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P 94 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFP 94 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCCh
Confidence 45777777665 89999999999999999877544
No 261
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=49.67 E-value=26 Score=32.70 Aligned_cols=39 Identities=21% Similarity=0.207 Sum_probs=31.0
Q ss_pred EEEEE-cCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCC
Q 012735 8 RLVLF-PLPLQGHISPMLQLANILHSQGFTITIIHTSFNS 46 (457)
Q Consensus 8 ~il~~-~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~ 46 (457)
|++|+ .-||-|-..-..++|-.++++|++|.++++...+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 45444 4667799999999999999999999999987443
No 262
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=49.66 E-value=14 Score=33.08 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 21 SPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 21 ~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
.-.-.|+++|+++||+|+++++.+
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 456789999999999999999874
No 263
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=49.51 E-value=34 Score=32.85 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+++++|+++... |. --..|++.|.++||+|+.+..
T Consensus 19 ~~~~~IlVtGgt--Gf--IG~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICITGAG--GF--IASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEECCc--cH--HHHHHHHHHHhCCCEEEEEEe
Confidence 467888877443 33 456789999999999999875
No 264
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=48.56 E-value=19 Score=33.62 Aligned_cols=34 Identities=12% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++||.|+..|..| .++|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46889999777655 47999999999999988764
No 265
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=48.55 E-value=2.1e+02 Score=25.96 Aligned_cols=57 Identities=11% Similarity=0.097 Sum_probs=38.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLS 65 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~ 65 (457)
++||+++..++...-. .++++|.++|.+|.++..............++.+.+|-+..
T Consensus 3 ~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs 59 (261)
T PRK01175 3 SIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFS 59 (261)
T ss_pred CCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCC
Confidence 4689999988875443 55789999999999887642111112235678888887643
No 266
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=47.92 E-value=35 Score=31.54 Aligned_cols=37 Identities=14% Similarity=0.145 Sum_probs=33.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||.+..=||-|-..-.+.||..|+++|+.|.++-..
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5789999999999999999999999999999998765
No 267
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=47.51 E-value=40 Score=28.58 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=23.4
Q ss_pred CeeEEEeCCC--cchHHHHHhHcCCCeEEE
Q 012735 104 PIACLISDAM--LPFTQAVADSLKLPRIVL 131 (457)
Q Consensus 104 ~pDlvi~D~~--~~~~~~~A~~l~iP~v~~ 131 (457)
++|.|++-.. ...+..+|.++|+|+|..
T Consensus 53 ~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 53 GIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred CCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 6899986543 477999999999999996
No 268
>PRK13236 nitrogenase reductase; Reviewed
Probab=47.21 E-value=40 Score=31.22 Aligned_cols=43 Identities=14% Similarity=0.165 Sum_probs=35.2
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+.+..+.|.|..=|+-|-..-.+.||-.|+++|++|.++-..
T Consensus 1 ~~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D 43 (296)
T PRK13236 1 MTDENIRQIAFYGKGGIGKSTTSQNTLAAMAEMGQRILIVGCD 43 (296)
T ss_pred CCCcCceEEEEECCCcCCHHHHHHHHHHHHHHCCCcEEEEEcc
Confidence 4544555567766778899999999999999999999999765
No 269
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=46.97 E-value=33 Score=31.11 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+|.|..=|+-|-..-...||..|+++|+.|.++-..
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 5688888788899999999999999999999988654
No 270
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=46.85 E-value=39 Score=27.03 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=34.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.+|++.+..+-+|-.----++..|.+.|++|..+...
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 45899999999999999999999999999999998874
No 271
>COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription]
Probab=46.81 E-value=26 Score=28.28 Aligned_cols=101 Identities=16% Similarity=0.157 Sum_probs=67.4
Q ss_pred cChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHHhcc-----------cc-hHHH
Q 012735 348 NGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRVMVE-----------KQ-GEEI 414 (457)
Q Consensus 348 gG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~il~~-----------~~-~~~~ 414 (457)
|+==|+.|-+.---|+|+=.-..=++++..++.+ |+-....+ .++.+.|..++..+-.. +. |.-.
T Consensus 35 ~~RFTTfE~~El~~~~VvKkdg~Re~F~r~Kl~~--gl~~A~~KRpVs~e~ie~~v~~ie~~Lr~~g~~EV~S~~IG~~V 112 (156)
T COG1327 35 GERFTTFERAELRPLIVVKKDGRREPFDREKLRR--GLIRACEKRPVSSEQIEEAVSHIERQLRSSGEREVPSKEIGELV 112 (156)
T ss_pred ccccchhheeeeccceEECcCCCcCCCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 4445889999888899998888899999999997 88888887 89999999999887522 00 1222
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 415 RSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 415 ~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
-+..+++-+...-....-..+.+.++++.+.|++..
T Consensus 113 M~~Lk~lD~VAYvRFASVYr~F~dv~~F~e~i~~l~ 148 (156)
T COG1327 113 MEELKKLDEVAYVRFASVYRSFKDVDDFEEEIEELT 148 (156)
T ss_pred HHHHHhcchhhhhhhhhHhcccCCHHHHHHHHHHHH
Confidence 233333333322222233345666667766666543
No 272
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=46.75 E-value=23 Score=32.75 Aligned_cols=54 Identities=15% Similarity=0.265 Sum_probs=37.3
Q ss_pred cCCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 337 AHPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 337 ~~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
..+++ +|+-||-||++++++. ++|++.+-.. .+|-.. ..+++++.++|.++++.
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGINHG--------------RLGFIT--DIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEcCC--------------Cccccc--cCCHHHHHHHHHHHHcC
Confidence 34566 9999999999999874 5677554321 112111 46778888999888876
No 273
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=46.71 E-value=1.9e+02 Score=26.08 Aligned_cols=42 Identities=17% Similarity=0.042 Sum_probs=34.8
Q ss_pred CCCcEEEEEcC-CCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 4 RKGRRLVLFPL-PLQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 4 ~~~~~il~~~~-~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
++..|-.|+.. |+-|-..-.-.||-.|+.-+|.|.++++...
T Consensus 16 q~slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA 58 (323)
T KOG2825|consen 16 QTSLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA 58 (323)
T ss_pred cceeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc
Confidence 56777777764 4559999999999999999999999998743
No 274
>PF03701 UPF0181: Uncharacterised protein family (UPF0181); InterPro: IPR005371 This family contains small proteins of about 50 amino acids of unknown function. The family includes YoaH P76260 from SWISSPROT.
Probab=46.66 E-value=52 Score=21.00 Aligned_cols=34 Identities=29% Similarity=0.264 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 413 EIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 413 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
.-.++++++.+.+. +|=|+..++....+.|++.+
T Consensus 12 eQQ~AvE~Iq~LMa----qGmSsgEAI~~VA~~iRe~~ 45 (51)
T PF03701_consen 12 EQQQAVERIQELMA----QGMSSGEAIAIVAQEIREEH 45 (51)
T ss_pred HHHHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHH
Confidence 44566777777777 78888888888888887754
No 275
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.56 E-value=93 Score=30.60 Aligned_cols=38 Identities=18% Similarity=0.248 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILH-SQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~ 43 (457)
+..|+++..++.|-..-...||..|. ++|..|.+++..
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 44567777888899999999999997 579999999886
No 276
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=46.47 E-value=79 Score=26.07 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=24.2
Q ss_pred CCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 012735 14 LPLQGHISPMLQLANILHSQGFTITIIH 41 (457)
Q Consensus 14 ~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 41 (457)
.++-|-..-.+.|++.|.++|.+|.++=
T Consensus 6 ~~~~GKT~va~~L~~~l~~~g~~V~~~k 33 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKAGYSVGYYK 33 (166)
T ss_pred CCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4456899999999999999999998863
No 277
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=46.45 E-value=83 Score=29.43 Aligned_cols=32 Identities=16% Similarity=0.420 Sum_probs=28.9
Q ss_pred CCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 14 LPLQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 14 ~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
.|+.|-+--.+.|++.|.++|+.|.+++-.+.
T Consensus 38 vGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg 69 (311)
T TIGR00682 38 VGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG 69 (311)
T ss_pred cCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 68889999999999999999999999998644
No 278
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=46.44 E-value=59 Score=32.52 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=80.7
Q ss_pred HHhhcCCCccccccC-hHh--hhcCCCCCCccc-----ccChhHHHHHHhhCCcccccCcc--chhhHHHHH--HHhhhc
Q 012735 317 MEMVDGRGHLVKWAP-QQE--VLAHPAVGAFWT-----HNGWNSTLESICEGIPMICMPCF--TDQKVNARY--VSDVWK 384 (457)
Q Consensus 317 ~~~~~~~~~~~~~vp-q~~--lL~~~~~~~~I~-----hgG~~s~~eal~~gvP~v~~P~~--~DQ~~na~~--v~~~lG 384 (457)
.++.+.++.+.-|.+ ... +++-+|+ ++. -||. |=++||++|.+-|+.+.. .|-...... .... |
T Consensus 344 a~~~~~~~~~~i~~~~~la~~i~agaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~-g 419 (487)
T COG0297 344 ASRHPGRVLVVIGYDEPLAHLIYAGADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV-G 419 (487)
T ss_pred HHhcCceEEEEeeecHHHHHHHHhcCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchhccCc-e
Confidence 344445555554444 333 5544554 543 3555 557899999988888874 222221111 4554 8
Q ss_pred cceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcccc
Q 012735 385 VGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLETF 452 (457)
Q Consensus 385 ~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (457)
.|..+... ++++++.++++.+. -|+.....++....++....-|.++.+++.++..++....
T Consensus 420 tGf~f~~~-~~~~l~~al~rA~~-----~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~~~~~ 481 (487)
T COG0297 420 TGFLFLQT-NPDHLANALRRALV-----LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKPLLSK 481 (487)
T ss_pred eEEEEecC-CHHHHHHHHHHHHH-----HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHHHhcc
Confidence 88888775 99999999998874 4555555566666666666778888888888887776543
No 279
>PRK13710 plasmid maintenance protein CcdA; Provisional
Probab=46.37 E-value=84 Score=22.03 Aligned_cols=43 Identities=23% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhccccc
Q 012735 398 IEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLETFT 453 (457)
Q Consensus 398 l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (457)
|.+++...|.. ..=+.++++++++- .+++++.-+++++|.+|+
T Consensus 24 lS~~~e~~L~~---~~~~~~~~~W~~eN----------~eai~~~n~~ve~~G~~~ 66 (72)
T PRK13710 24 ISGLVNTAMQN---EARRLRAERWKAEN----------REGMAEVARFIEMNGSFA 66 (72)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH----------HHHHHHHHHHHHHhCCcH
Confidence 34455666665 44456667777764 578888888999998764
No 280
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=46.02 E-value=51 Score=27.45 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHH-CCCeEEEEe
Q 012735 19 HISPMLQLANILHS-QGFTITIIH 41 (457)
Q Consensus 19 H~~p~l~la~~L~~-~Gh~Vt~~~ 41 (457)
|....-+|+++|.+ +|.++.+..
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v 24 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEV 24 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEE
Confidence 77888999999988 565555543
No 281
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=45.98 E-value=1.1e+02 Score=30.10 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=20.9
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEE
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVL 131 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~ 131 (457)
+||+||.....- .+|+++|||++.+
T Consensus 358 ~pdliig~s~~~---~~a~~lgip~~~~ 382 (415)
T cd01977 358 KPDIILTGPRVG---ELVKKLHVPYVNI 382 (415)
T ss_pred CCCEEEecCccc---hhhhhcCCCEEec
Confidence 899999886443 6899999999886
No 282
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=45.84 E-value=5.6 Score=20.85 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=13.8
Q ss_pred ChhHHHHHHhhCCcccc
Q 012735 349 GWNSTLESICEGIPMIC 365 (457)
Q Consensus 349 G~~s~~eal~~gvP~v~ 365 (457)
|.|+++.+|..|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67899999999998765
No 283
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=45.45 E-value=37 Score=30.83 Aligned_cols=37 Identities=14% Similarity=0.064 Sum_probs=32.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+|.+..=||-|-..-...||..|+++|++|.++-..
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D 37 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD 37 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5688887778899999999999999999999988654
No 284
>PRK04148 hypothetical protein; Provisional
Probab=45.14 E-value=45 Score=26.69 Aligned_cols=33 Identities=21% Similarity=0.432 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++|+.+..| +| ..+|..|++.||+|+.+-..
T Consensus 16 ~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~ 48 (134)
T PRK04148 16 KNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDIN 48 (134)
T ss_pred cCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECC
Confidence 34788888888 44 24688899999999987764
No 285
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=44.78 E-value=1.4e+02 Score=26.35 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.5
Q ss_pred EEEEEcCCCc-cCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 8 RLVLFPLPLQ-GHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 8 ~il~~~~~~~-gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
++++....+. |-....-.|++.|+.+|++|-..=+
T Consensus 4 ~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KP 39 (223)
T COG0132 4 RFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKP 39 (223)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECc
Confidence 4444445544 9999999999999999999988654
No 286
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=44.57 E-value=3e+02 Score=26.61 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=36.7
Q ss_pred CCCCcccccChhHHHHHHhhCCcccc--cCccch------hhHHHHHHHhhhccceecCC--CCCHHHHHHHHHHHhccc
Q 012735 340 AVGAFWTHNGWNSTLESICEGIPMIC--MPCFTD------QKVNARYVSDVWKVGLQLEN--GLKREEIEKTIRRVMVEK 409 (457)
Q Consensus 340 ~~~~~I~hgG~~s~~eal~~gvP~v~--~P~~~D------Q~~na~~v~~~lG~g~~l~~--~~~~~~l~~ai~~il~~~ 409 (457)
.+-++-|+ |..++..|+.+|.|+-. ++.++| =..|+-++... ..+. .++.+++..+|.++++|+
T Consensus 244 kIIGVEt~-~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~-----~~d~vvvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 244 KIIGVETE-GAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQK-----LVDRVVVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred ceEEEeec-CcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHh-----cCceEEEeccHHHHHHHHHHHHhh
Confidence 33334444 46688888888888621 112222 12333333332 1122 478899999999999883
No 287
>PLN02470 acetolactate synthase
Probab=44.34 E-value=47 Score=34.26 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=52.4
Q ss_pred Eeccccc--CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccC-hHhh-------hc
Q 012735 268 SFGSIAA--VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAP-QQEV-------LA 337 (457)
Q Consensus 268 s~Gs~~~--~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-q~~l-------L~ 337 (457)
+|||... ......+.+++.|++.|.+.++.+.+... ..+-+.+.+ .++++.+.--- +.+. ..
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~------~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS------MEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc------HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 4666665 22334567889999999999988887641 111122210 01122211100 1111 11
Q ss_pred CCCCCCcccccCh------hHHHHHHhhCCcccccC
Q 012735 338 HPAVGAFWTHNGW------NSTLESICEGIPMICMP 367 (457)
Q Consensus 338 ~~~~~~~I~hgG~------~s~~eal~~gvP~v~~P 367 (457)
.-..+++++|.|- +.+.+|...++|+|++.
T Consensus 74 tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 74 SGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred hCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1234448888884 47889999999999995
No 288
>PRK13604 luxD acyl transferase; Provisional
Probab=44.15 E-value=50 Score=30.74 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
++.+.+++..+..++-.-+..+|+.|.++|+.|.-+-.
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD~ 72 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYDS 72 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEecC
Confidence 35567777888777777799999999999999887754
No 289
>PRK05636 replicative DNA helicase; Provisional
Probab=43.84 E-value=35 Score=34.39 Aligned_cols=36 Identities=11% Similarity=0.140 Sum_probs=29.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-HCCCeEEEEeCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILH-SQGFTITIIHTSF 44 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~-~~Gh~Vt~~~~~~ 44 (457)
|++...|+.|-..-.+.+|...+ +.|..|.|++.+.
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEM 304 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEM 304 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeC
Confidence 56777889999999999998876 4589999998874
No 290
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=43.73 E-value=34 Score=29.70 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=31.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
-|++..+|+.|-....-.||++|.+++|.|..++..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 467777999999999999999999999999887764
No 291
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=43.66 E-value=30 Score=31.44 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCCCCcccccChhHHHHHHh------hCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 339 PAVGAFWTHNGWNSTLESIC------EGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 339 ~~~~~~I~hgG~~s~~eal~------~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+++ +|+-||=||++.+++ .++|++.+-.. .+|-.- ...++++.++++++++.
T Consensus 36 ~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 36 PDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHTG--------------HLGFYT--DWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeCC--------------Cceecc--cCCHHHHHHHHHHHHcC
Confidence 566 999999999999987 47787665431 112111 35678888888888876
No 292
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=43.27 E-value=35 Score=30.34 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=27.3
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~~ 43 (457)
||++.-.|+.+=+.-.+.+.+.|+++ ||+|.++.++
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~ 38 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEELRVSTFVSR 38 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCCCeEEEEECh
Confidence 34444445434446899999999999 9999999986
No 293
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=43.25 E-value=40 Score=29.27 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=23.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|++.++.. |+ --.+||.+|++.||+|++.+..
T Consensus 2 ~~~~i~Gt---Gn--iG~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 2 MIIAIIGT---GN--IGSALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred cEEEEecc---Ch--HHHHHHHHHHhCCCeEEEecCC
Confidence 44555443 33 3468999999999999999875
No 294
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=43.19 E-value=2.9e+02 Score=27.00 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=20.6
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEE
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVL 131 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~ 131 (457)
+||++|.+.. ...+|+++|||++..
T Consensus 356 ~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 356 KADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred CCCEEEECCc---chhhHHhcCCCEEEc
Confidence 8999999953 457899999999854
No 295
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=42.88 E-value=30 Score=37.63 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 3 QRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+.+++||+++..|-- -+..|..|+.+||+||++-.
T Consensus 380 ~~tgKKVaVVGaGPA-----GLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 380 EPTNYNILVTGLGPA-----GFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCCCeEEEECcCHH-----HHHHHHHHHhCCCeEEEEcc
Confidence 356889999987643 48899999999999999875
No 296
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.62 E-value=74 Score=29.97 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCC--CCCCCCCCeeEEecCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNS--PNPSSHPHLTFHFIQE 62 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~--~~~~~~~g~~~~~i~~ 62 (457)
.+|+|+.++..|--||--.|.-=|..|++.|.+|.+++.-... ...-+.++++++.+++
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCC
Confidence 4688899999998899889999999999999999998864221 1222358899998884
No 297
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=42.57 E-value=29 Score=31.89 Aligned_cols=32 Identities=19% Similarity=0.364 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||.|+..+..| .++|+.|+++||+|++....
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 367888777665 58899999999999998864
No 298
>PRK09165 replicative DNA helicase; Provisional
Probab=42.56 E-value=45 Score=33.60 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=30.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC---------------CCeEEEEeCCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQ---------------GFTITIIHTSFN 45 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~---------------Gh~Vt~~~~~~~ 45 (457)
+++...|+.|-..-.+.+|...+.+ |..|.|++.+..
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs 271 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS 271 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC
Confidence 6777788999999999999888754 789999998743
No 299
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=42.56 E-value=36 Score=31.35 Aligned_cols=56 Identities=9% Similarity=0.066 Sum_probs=37.3
Q ss_pred hhcCCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 335 VLAHPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 335 lL~~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+...+++ +|+-||-||++.+++. ++|++.+-.. + +|. +. ..+++++.++++++++.
T Consensus 61 ~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGIN~G-----------~-lGF---Lt-~~~~~~~~~~l~~i~~g 120 (287)
T PRK14077 61 LFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGIHAG-----------H-LGF---LT-DITVDEAEKFFQAFFQG 120 (287)
T ss_pred cccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEEeCC-----------C-ccc---CC-cCCHHHHHHHHHHHHcC
Confidence 3344666 9999999999988763 6777544321 0 111 11 46778888888888875
No 300
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=42.42 E-value=30 Score=32.00 Aligned_cols=31 Identities=13% Similarity=0.253 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|||+++..|..| ..+|..|.+.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 478888776655 5688889999999999987
No 301
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=42.38 E-value=62 Score=25.09 Aligned_cols=37 Identities=16% Similarity=0.128 Sum_probs=33.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
||++...++.|-......+++.|+++|.+|.++....
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788889999999999999999999999999888753
No 302
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=42.33 E-value=39 Score=28.59 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=23.9
Q ss_pred HHHHhhccCCCCeeEEEeCCCcch--HHHHHhHcCCCeEEEe
Q 012735 93 LAKLLADVEEEPIACLISDAMLPF--TQAVADSLKLPRIVLR 132 (457)
Q Consensus 93 l~~l~~~~~~~~pDlvi~D~~~~~--~~~~A~~l~iP~v~~~ 132 (457)
++.+++. +||+||....... ....-+..|||++.+.
T Consensus 62 ~E~ll~l----~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 62 VELIVAL----KPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred HHHHhcc----CCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 4555554 9999998654422 3334467899998875
No 303
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=42.24 E-value=39 Score=34.42 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHhhCCcccccCccc-hhhHHHH--HHHhhhccceecCCCCCHHHHHHHHHHHhcc------cchHHHHHHHHHHH
Q 012735 352 STLESICEGIPMICMPCFT-DQKVNAR--YVSDVWKVGLQLENGLKREEIEKTIRRVMVE------KQGEEIRSRIFRLK 422 (457)
Q Consensus 352 s~~eal~~gvP~v~~P~~~-DQ~~na~--~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~------~~~~~~~~~a~~l~ 422 (457)
|-+||..+|||.|..-+.+ -++.+-. .-.. .|+-+.=+...+.++..+.|...|.+ +++...|+++++++
T Consensus 485 TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS 563 (633)
T PF05693_consen 485 TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLADFLYKFCQLSRRQRIIQRNRAERLS 563 (633)
T ss_dssp HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHG
T ss_pred ChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 8999999999999887642 1111100 1123 26665544466777766666665522 23567889999888
Q ss_pred HHHH
Q 012735 423 EKAN 426 (457)
Q Consensus 423 ~~~~ 426 (457)
+.+-
T Consensus 564 ~~~d 567 (633)
T PF05693_consen 564 DLAD 567 (633)
T ss_dssp GGGB
T ss_pred HhCC
Confidence 8763
No 304
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=41.82 E-value=22 Score=29.47 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+++|.|+..+..| .++|+.|.++||+|++.-.
T Consensus 1 m~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 1 MMKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp -BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CCEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 3578888877544 5899999999999998764
No 305
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=41.76 E-value=46 Score=28.70 Aligned_cols=39 Identities=28% Similarity=0.259 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.+.||.+=..++-|-.+.|+.=|++|+++|-+|.+..-+
T Consensus 4 GrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 4 GRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred ccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 467888888999999999999999999999999986654
No 306
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.62 E-value=30 Score=32.01 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=39.1
Q ss_pred hhhcCCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 334 EVLAHPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 334 ~lL~~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
.+...+++ +|+=||=||++.+++. ++|++.+-.. .+|-. ...+++++.+++++++++
T Consensus 60 ~~~~~~dl--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G--------------~lGFL--t~~~~~~~~~~l~~i~~g 120 (292)
T PRK01911 60 ELDGSADM--VISIGGDGTFLRTATYVGNSNIPILGINTG--------------RLGFL--ATVSKEEIEETIDELLNG 120 (292)
T ss_pred hcccCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEecC--------------CCCcc--cccCHHHHHHHHHHHHcC
Confidence 33334566 9999999999999873 6787554331 11211 146788899999999887
No 307
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=41.60 E-value=70 Score=29.06 Aligned_cols=37 Identities=19% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 3 QRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++++++ ++..+.| --.++|+.|+++||+|.++.-.
T Consensus 3 ~~~~~~~l-ITGASsG---IG~~~A~~lA~~g~~liLvaR~ 39 (265)
T COG0300 3 PMKGKTAL-ITGASSG---IGAELAKQLARRGYNLILVARR 39 (265)
T ss_pred CCCCcEEE-EECCCch---HHHHHHHHHHHCCCEEEEEeCc
Confidence 33344444 4444433 3578999999999999999874
No 308
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=41.44 E-value=2.6e+02 Score=27.81 Aligned_cols=25 Identities=20% Similarity=0.133 Sum_probs=20.3
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEEE
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIVL 131 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~~ 131 (457)
+||++|... ....+|.++|||++.+
T Consensus 395 ~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 395 KADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred CCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 899999863 3467888999999875
No 309
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=41.39 E-value=57 Score=27.92 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=24.2
Q ss_pred CeeEEEeCCC--cchHHHHHhHcCCCeEEEec
Q 012735 104 PIACLISDAM--LPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 104 ~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~~ 133 (457)
++|+|++-.. .+.+..+|..+|+|++...-
T Consensus 50 ~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK 81 (189)
T PRK09219 50 GITKILTIEASGIAPAVMAALALGVPVVFAKK 81 (189)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 7899986543 37888999999999999754
No 310
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=41.05 E-value=33 Score=33.19 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++||++.-.|+.| ..-...+.+.|.+.|++|.++.++
T Consensus 2 ~~k~IllgiTGSia-a~~~~~ll~~L~~~g~~V~vv~T~ 39 (390)
T TIGR00521 2 ENKKILLGVTGGIA-AYKTVELVRELVRQGAEVKVIMTE 39 (390)
T ss_pred CCCEEEEEEeCHHH-HHHHHHHHHHHHhCCCEEEEEECH
Confidence 35678777777644 466899999999999999999986
No 311
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=41.02 E-value=1.7e+02 Score=27.76 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGF-TITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~~ 43 (457)
+.||+++..++-| ..+|+.|++.|. +++++-..
T Consensus 24 ~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 4678999888765 567999999998 77777663
No 312
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=40.95 E-value=2.1e+02 Score=24.57 Aligned_cols=121 Identities=13% Similarity=0.118 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHHH
Q 012735 276 SEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTLE 355 (457)
Q Consensus 276 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~e 355 (457)
+..+-..+.+.+...+.++++--+. +.-|.+.|.++++.++. =-||++ .=.++|..+..+
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~grIl----------NIHPSL--LP~f~G~h~~~~ 123 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEGRIL----------NIHPSL--LPAFPGLHAHEQ 123 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhcceE----------ecCccc--ccCCCCchHHHH
Confidence 3445556999999888886554443 34477777666554221 137888 888999999999
Q ss_pred HHhhCCcccccCcc-c-hhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcccchHHHHHHHHHHHH
Q 012735 356 SICEGIPMICMPCF-T-DQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVEKQGEEIRSRIFRLKE 423 (457)
Q Consensus 356 al~~gvP~v~~P~~-~-DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~~~~~~~~~~a~~l~~ 423 (457)
|+.+|+..-++-.+ . +..+-+-.+.. ..+.+...-|.|.|.+.|...-. .-|-+..+.+.+
T Consensus 124 A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~~~~ 186 (200)
T COG0299 124 ALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGDTAETLEARVLEQEH----RLYPLAVKLLAE 186 (200)
T ss_pred HHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 99999998666543 2 22222222221 12222223488888887766433 356665555544
No 313
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=40.94 E-value=1.5e+02 Score=29.87 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=25.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHC--CCeEEEEeC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQ--GFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~--Gh~Vt~~~~ 42 (457)
||||++..+++.| +|+++|++. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 6899999998887 688888887 999888754
No 314
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=40.91 E-value=58 Score=30.33 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCCCCCcccccChhHHHHHHhh----CCcccccCc
Q 012735 338 HPAVGAFWTHNGWNSTLESICE----GIPMICMPC 368 (457)
Q Consensus 338 ~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~ 368 (457)
.+++ +|.-||-||+++++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4566 9999999999999874 778877665
No 315
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=40.65 E-value=2.4e+02 Score=28.29 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=20.6
Q ss_pred CeeEEEeCCCcchHHHHHhHcCCCeEE
Q 012735 104 PIACLISDAMLPFTQAVADSLKLPRIV 130 (457)
Q Consensus 104 ~pDlvi~D~~~~~~~~~A~~l~iP~v~ 130 (457)
+||++|.+ .....+|+++|||++-
T Consensus 393 ~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 393 KADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred CCCEEEec---CchhhhhhhcCCCEEE
Confidence 89999997 4466899999999984
No 316
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.64 E-value=54 Score=30.39 Aligned_cols=33 Identities=30% Similarity=0.239 Sum_probs=25.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++++.++.| -.+++|.+++.+||+||+.+-+
T Consensus 34 ~hi~itggS~g---lgl~la~e~~~~ga~Vti~ar~ 66 (331)
T KOG1210|consen 34 RHILITGGSSG---LGLALALECKREGADVTITARS 66 (331)
T ss_pred ceEEEecCcch---hhHHHHHHHHHccCceEEEecc
Confidence 44555555544 4689999999999999999875
No 317
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=40.60 E-value=40 Score=31.70 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=25.2
Q ss_pred cccccChhHHHHHHhhCCcccccCccchhhHHHHHHHhhhcc-ceecCC
Q 012735 344 FWTHNGWNSTLESICEGIPMICMPCFTDQKVNARYVSDVWKV-GLQLEN 391 (457)
Q Consensus 344 ~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~v~~~lG~-g~~l~~ 391 (457)
.++|||+....- ..-|-.++|+ +..+.+++. |. |-.-+.
T Consensus 272 ~~~HgGYD~~~a---n~D~N~v~Pl-----D~LreL~~E-G~IG~l~~~ 311 (349)
T PF07355_consen 272 MTIHGGYDPAYA---NEDPNRVFPL-----DRLRELEKE-GVIGSLAPY 311 (349)
T ss_pred EeeccccChhHh---ccCCCeeeeH-----HHHHHHHHc-CCcccccCe
Confidence 999999976543 3667777776 446667765 54 544433
No 318
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=40.50 E-value=1.5e+02 Score=25.08 Aligned_cols=98 Identities=10% Similarity=0.041 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC--------CCCCCCeeEEecCCCCCCCCCCccCHHH
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPN--------PSSHPHLTFHFIQENLSASEASTDDLVA 76 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~--------~~~~~g~~~~~i~~~~~~~~~~~~~~~~ 76 (457)
++.-|.+++..+.|-....+.+|-+-+-+|..|.++- |.+.. ....+++.+...+.+..-.. .+..+
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQ--FlKg~~~~GE~~~l~~~~~v~~~~~g~~~~~~~---~~~~~ 94 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQ--FLKGGIQQGPDRPIQLGQNLDWVRCDLPRCLDT---PHLDE 94 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEE--EecCCCcchHHHHHHhCCCcEEEECCCCCeeeC---CCcCH
Confidence 4566888899999988776666555555555666543 22211 11224677877764322111 11110
Q ss_pred HHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCc
Q 012735 77 FVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAML 114 (457)
Q Consensus 77 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~ 114 (457)
.....+...++...+.+... .+|+||.|...
T Consensus 95 ---~~~~~~~~~~~~a~~~l~~~----~~dlvVLDEi~ 125 (178)
T PRK07414 95 ---SEKKALQELWQYTQAVVDEG----RYSLVVLDELS 125 (178)
T ss_pred ---HHHHHHHHHHHHHHHHHhCC----CCCEEEEehhH
Confidence 01122223333322233222 89999999754
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=40.27 E-value=55 Score=30.87 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
...++|+..+|.|=..-..++|++|.++|+.|.+++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 35688888888899999999999999999999998874
No 320
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=40.13 E-value=76 Score=26.41 Aligned_cols=31 Identities=19% Similarity=0.273 Sum_probs=23.9
Q ss_pred CCCcEEEEEecccccCCHHHHHHHHHHHhhC
Q 012735 260 APKSVIYVSFGSIAAVSEAEFLEIAWGLANC 290 (457)
Q Consensus 260 ~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~ 290 (457)
+....+|+++||....+.+.++..++.+...
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 3445799999999876777778777777664
No 321
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=40.05 E-value=63 Score=29.56 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=29.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 3 QRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
|+..+||++...+++ -...|++.|..+||+|..+---+
T Consensus 24 p~~~lrI~itGgaGF----IgSHLvdkLm~egh~VIa~Dn~f 61 (350)
T KOG1429|consen 24 PSQNLRILITGGAGF----IGSHLVDKLMTEGHEVIALDNYF 61 (350)
T ss_pred CCCCcEEEEecCcch----HHHHHHHHHHhcCCeEEEEeccc
Confidence 556789999887774 23347999999999999877643
No 322
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=40.03 E-value=37 Score=28.86 Aligned_cols=43 Identities=9% Similarity=0.117 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecC--CCCCC
Q 012735 21 SPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQ--ENLSA 66 (457)
Q Consensus 21 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~--~~~~~ 66 (457)
.-.+.+|+.|.+.|+++. .+.. -...... .|+.+..+. .++|+
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~G-TAk~L~e-~GI~v~~V~k~TgfpE 55 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STGG-TAKFLKE-AGIPVTDVSDITGFPE 55 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-EccH-HHHHHHH-cCCeEEEhhhccCCcH
Confidence 447899999999999973 4442 2222222 567776665 24454
No 323
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.97 E-value=29 Score=32.30 Aligned_cols=53 Identities=15% Similarity=0.267 Sum_probs=37.5
Q ss_pred CCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 338 HPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 338 ~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
.+++ +|+=||=||++.+++. ++|++.+-.. .+|-. ...+++++.+++.+++++
T Consensus 68 ~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN~G--------------~lGFL--t~~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 68 SMKF--AIVLGGDGTVLSAARQLAPCGIPLLTINTG--------------HLGFL--TEAYLNQLDEAIDQVLAG 124 (305)
T ss_pred CcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEeCC--------------CCccc--ccCCHHHHHHHHHHHHcC
Confidence 4555 9999999999999874 7788655321 11111 145788899999999876
No 324
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.64 E-value=60 Score=27.13 Aligned_cols=38 Identities=24% Similarity=0.318 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.+..+|++++.++. .=-=.+.+|+.|.++|++|+++..
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 35677888887752 112368889999999999999443
No 325
>PRK05114 hypothetical protein; Provisional
Probab=39.52 E-value=1e+02 Score=20.32 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 413 EIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 413 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
.-.++++++++.+. +|=|+..++....+.|++.+
T Consensus 12 eQQ~AVErIq~LMa----qGmSsgEAI~~VA~eiRe~~ 45 (59)
T PRK05114 12 QQQKAVERIQELMA----QGMSSGEAIALVAEELRANH 45 (59)
T ss_pred HHHHHHHHHHHHHH----ccccHHHHHHHHHHHHHHHH
Confidence 45667777788777 78888888888888888765
No 326
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=39.51 E-value=41 Score=32.67 Aligned_cols=38 Identities=24% Similarity=0.256 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++||++...|+. ...-...+.+.|.++|++|.++.++
T Consensus 5 ~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~ 42 (399)
T PRK05579 5 AGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTE 42 (399)
T ss_pred CCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECH
Confidence 4567877777764 5557789999999999999999986
No 327
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.46 E-value=94 Score=20.19 Aligned_cols=34 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 413 EIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 413 ~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
.-.++.+++++.+. +|=|+-.++......|++.+
T Consensus 12 qQQ~AVE~Iq~lMa----eGmSsGEAIa~VA~elRe~h 45 (60)
T COG3140 12 QQQKAVERIQELMA----EGMSSGEAIALVAQELRENH 45 (60)
T ss_pred HHHHHHHHHHHHHH----ccccchhHHHHHHHHHHHHh
Confidence 34556677777777 77888888888888888765
No 328
>PRK07773 replicative DNA helicase; Validated
Probab=39.45 E-value=49 Score=36.12 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=31.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeCCCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQ-GFTITIIHTSFN 45 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~-Gh~Vt~~~~~~~ 45 (457)
|++..-|+.|-..-.+.+|...+.+ |..|.|++.+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms 257 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS 257 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 6777788999999999999998755 889999998643
No 329
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=39.36 E-value=66 Score=25.72 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=28.6
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 10 VLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 10 l~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+++.++..--+.|..-++...++.|+||+++.+
T Consensus 7 IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 7 IILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 445566678899999999999999999999988
No 330
>PRK07454 short chain dehydrogenase; Provisional
Probab=39.29 E-value=73 Score=28.06 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=25.2
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|...+++++ +++.+ .| .--..++++|.++|++|+++..
T Consensus 1 ~~~~~~k~v-lItG~-sg--~iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 1 MSLNSMPRA-LITGA-SS--GIGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCCCCCEE-EEeCC-Cc--hHHHHHHHHHHHCCCEEEEEeC
Confidence 454444444 44433 23 4457889999999999998875
No 331
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=39.25 E-value=72 Score=27.48 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=29.1
Q ss_pred CcEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFP-LPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.+.|.|.. -++-|-..-...||..|+++|++|.++-..
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D 55 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD 55 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 34444443 445588999999999999999999888664
No 332
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.01 E-value=44 Score=30.92 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=38.3
Q ss_pred hhcCCCCCCcccccChhHHHHHHh----hCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 335 VLAHPAVGAFWTHNGWNSTLESIC----EGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 335 lL~~~~~~~~I~hgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+...+++ +|+=||=||++.+++ .++|++.+-.. + +|.-. .++++++.+++++++++
T Consensus 60 ~~~~~d~--vi~lGGDGT~L~aa~~~~~~~~Pilgin~G-----------~-lGFl~----~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 60 IGQQADL--AIVVGGDGNMLGAARVLARYDIKVIGINRG-----------N-LGFLT----DLDPDNALQQLSDVLEG 119 (292)
T ss_pred cCCCCCE--EEEECCcHHHHHHHHHhcCCCCeEEEEECC-----------C-CCccc----ccCHHHHHHHHHHHHcC
Confidence 3334666 999999999999986 36677554331 1 22211 45688999999999876
No 333
>PLN00016 RNA-binding protein; Provisional
Probab=38.92 E-value=39 Score=32.51 Aligned_cols=36 Identities=14% Similarity=0.192 Sum_probs=25.2
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPL--PLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~--~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++|+++.. |+.|. -...|++.|.++||+|+.++..
T Consensus 52 ~~~VLVt~~~~GatG~--iG~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAF--IGFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCcee--EhHHHHHHHHHCCCEEEEEecC
Confidence 457777621 23333 3456789999999999998874
No 334
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=38.83 E-value=59 Score=30.09 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++|.|..-|+-|-..-...||-.|++.|++|.++-..
T Consensus 3 ~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D 41 (295)
T PRK13234 3 KLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCD 41 (295)
T ss_pred cceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 445666766677799999999999999999999999664
No 335
>PRK08322 acetolactate synthase; Reviewed
Probab=38.70 E-value=1.2e+02 Score=31.07 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.4
Q ss_pred CCcccccCh------hHHHHHHhhCCcccccC
Q 012735 342 GAFWTHNGW------NSTLESICEGIPMICMP 367 (457)
Q Consensus 342 ~~~I~hgG~------~s~~eal~~gvP~v~~P 367 (457)
+++++|.|- +.+.+|...++|+|++-
T Consensus 65 gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 65 GVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred EEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 338888874 48899999999999885
No 336
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=38.59 E-value=48 Score=30.24 Aligned_cols=42 Identities=17% Similarity=0.248 Sum_probs=27.8
Q ss_pred CCCCCC-cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 1 MDQRKG-RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 1 ~~~~~~-~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+|++. ..|+|+...+ ++-.-...++..|.++||+|..+..+
T Consensus 12 ~~~~~~~p~vvliHG~~-~~~~~w~~~~~~L~~~g~~vi~~dl~ 54 (273)
T PLN02211 12 MKPNRQPPHFVLIHGIS-GGSWCWYKIRCLMENSGYKVTCIDLK 54 (273)
T ss_pred ccccCCCCeEEEECCCC-CCcCcHHHHHHHHHhCCCEEEEeccc
Confidence 456443 4465555444 33345678888999999999887764
No 337
>PRK07206 hypothetical protein; Provisional
Probab=38.56 E-value=1.1e+02 Score=29.95 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=24.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++|+++-.... ...+++++.++|++|.+++..
T Consensus 3 k~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~ 34 (416)
T PRK07206 3 KKVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSS 34 (416)
T ss_pred CeEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcC
Confidence 46777765433 346899999999999888874
No 338
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=38.46 E-value=57 Score=31.85 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=30.3
Q ss_pred CcEEEEEc--CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFP--LPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~--~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++|+.+. -||-|-..-.+.||..|+.+|+.|.++-..
T Consensus 120 ~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred CceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 34554444 467799999999999999999999998654
No 339
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=38.31 E-value=36 Score=32.06 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..|||.|+..|..| .++|..|+++||+|+++...
T Consensus 3 ~~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 3 HGMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 46799999877765 57899999999999998874
No 340
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=38.29 E-value=1e+02 Score=26.65 Aligned_cols=141 Identities=12% Similarity=0.105 Sum_probs=70.3
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcC-CCccccccChHhhhcCC
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDG-RGHLVKWAPQQEVLAHP 339 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~-~~~~~~~vpq~~lL~~~ 339 (457)
.++++.|+.|.++ ...++.|...+..+.++- .. ..+.+.+..+. ++.......+..-+..+
T Consensus 10 ~k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs-~~----------~~~~l~~l~~~~~i~~~~~~~~~~~l~~a 71 (202)
T PRK06718 10 NKRVVIVGGGKVA-------GRRAITLLKYGAHIVVIS-PE----------LTENLVKLVEEGKIRWKQKEFEPSDIVDA 71 (202)
T ss_pred CCEEEEECCCHHH-------HHHHHHHHHCCCeEEEEc-CC----------CCHHHHHHHhCCCEEEEecCCChhhcCCc
Confidence 4578888776665 233444444565554443 21 22333222222 22233333345556667
Q ss_pred CCCCcccccChhHHHHHHh----hCCcccccCccchhhHHH-----HHHHhhhccceecCC----CCCHHHHHHHHHHHh
Q 012735 340 AVGAFWTHNGWNSTLESIC----EGIPMICMPCFTDQKVNA-----RYVSDVWKVGLQLEN----GLKREEIEKTIRRVM 406 (457)
Q Consensus 340 ~~~~~I~hgG~~s~~eal~----~gvP~v~~P~~~DQ~~na-----~~v~~~lG~g~~l~~----~~~~~~l~~ai~~il 406 (457)
++ +|.--+...+.+.++ .++++-+ .|.+..+ ..+.+. ++-+.+.. ..-+..|++.|..++
T Consensus 72 dl--ViaaT~d~elN~~i~~~a~~~~lvn~----~d~~~~~~f~~Pa~~~~g-~l~iaIsT~G~sP~la~~lr~~ie~~~ 144 (202)
T PRK06718 72 FL--VIAATNDPRVNEQVKEDLPENALFNV----ITDAESGNVVFPSALHRG-KLTISVSTDGASPKLAKKIRDELEALY 144 (202)
T ss_pred eE--EEEcCCCHHHHHHHHHHHHhCCcEEE----CCCCccCeEEEeeEEEcC-CeEEEEECCCCChHHHHHHHHHHHHHc
Confidence 76 888777666666654 4444322 3433322 223332 44444433 234455666676666
Q ss_pred cccchHHHHHHHHHHHHHHHH
Q 012735 407 VEKQGEEIRSRIFRLKEKANH 427 (457)
Q Consensus 407 ~~~~~~~~~~~a~~l~~~~~~ 427 (457)
.. +...+-+.+.++++.+++
T Consensus 145 ~~-~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 145 DE-SYESYIDFLYECRQKIKE 164 (202)
T ss_pred ch-hHHHHHHHHHHHHHHHHH
Confidence 32 224566666667776664
No 341
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.12 E-value=1.3e+02 Score=22.03 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=27.3
Q ss_pred HHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 398 IEKTIRRVMVEKQ-GEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 398 l~~ai~~il~~~~-~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
....++++.+|.. -...|+.|++..+.+.+ ++.+....+...+..|++..
T Consensus 18 ~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~---e~e~p~vRaAtaIsiLeeis 68 (93)
T COG1698 18 VMQLLDEIIQDTTVPRNIRRAAEEAKEALNN---EGESPAVRAATAISILEEIS 68 (93)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHhC---CCCCchhHHHHHHHHHHHHh
Confidence 3445556677722 13455555555555553 46666666666666665543
No 342
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.93 E-value=48 Score=30.73 Aligned_cols=57 Identities=16% Similarity=0.144 Sum_probs=39.4
Q ss_pred hhhcCCCCCCcccccChhHHHHHHh----hCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 334 EVLAHPAVGAFWTHNGWNSTLESIC----EGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 334 ~lL~~~~~~~~I~hgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
++...+++ +|+=||=||++.+++ .++|++.+-.. + +|-.- .++++++.+++++++++
T Consensus 64 ~~~~~~D~--vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-----------~---lGFL~--~~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 64 ELGQYCDL--VAVLGGDGTFLSVAREIAPRAVPIIGINQG-----------H---LGFLT--QIPREYMTDKLLPVLEG 124 (296)
T ss_pred hcCcCCCE--EEEECCcHHHHHHHHHhcccCCCEEEEecC-----------C---CeEee--ccCHHHHHHHHHHHHcC
Confidence 33334666 999999999999976 36787665421 1 12111 46788899999999876
No 343
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=37.77 E-value=35 Score=33.79 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=25.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||+++..| ..-++-|.+|+++||+||++=..
T Consensus 1 ~rVai~GaG-----~AgL~~a~~La~~g~~vt~~ea~ 32 (485)
T COG3349 1 MRVAIAGAG-----LAGLAAAYELADAGYDVTLYEAR 32 (485)
T ss_pred CeEEEEccc-----HHHHHHHHHHHhCCCceEEEecc
Confidence 466666554 35588899999999999998764
No 344
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=37.44 E-value=35 Score=27.20 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=22.5
Q ss_pred CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 16 LQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 16 ~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..-.+.-.+=++..|.++||+|++++++
T Consensus 9 ~Pvq~p~alYl~~~Lk~~G~~v~Va~np 36 (139)
T PF09001_consen 9 VPVQTPSALYLSYKLKKKGFEVVVAGNP 36 (139)
T ss_dssp STTHHHHHHHHHHHHHCTTEEEEEEE-H
T ss_pred CcchhHHHHHHHHHHHhcCCeEEEecCH
Confidence 3355666788899999999999999986
No 345
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=37.26 E-value=31 Score=28.55 Aligned_cols=51 Identities=14% Similarity=0.153 Sum_probs=32.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCC-CCCCCCeeEEecC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPN-PSSHPHLTFHFIQ 61 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~-~~~~~g~~~~~i~ 61 (457)
.++|.++.++++|| +.|.-|++-|.+|++...+..... ..+..||+...+.
T Consensus 4 ~k~IAViGyGsQG~-----a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~ 55 (165)
T PF07991_consen 4 GKTIAVIGYGSQGH-----AHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVA 55 (165)
T ss_dssp TSEEEEES-SHHHH-----HHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHH
T ss_pred CCEEEEECCChHHH-----HHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHH
Confidence 57899999999998 457889999999999887633111 1112566655544
No 346
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=37.26 E-value=82 Score=24.96 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=18.4
Q ss_pred CHHHHHHHHHHHHHCCCeE-EEEeCC
Q 012735 19 HISPMLQLANILHSQGFTI-TIIHTS 43 (457)
Q Consensus 19 H~~p~l~la~~L~~~Gh~V-t~~~~~ 43 (457)
...-.+.+|+++.+.||+| +++-..
T Consensus 16 ~~~~al~~A~aa~~~gh~v~~vFf~~ 41 (128)
T PRK00207 16 QASSAYQFAQALLAEGHELVSVFFYQ 41 (128)
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEeh
Confidence 3345778899999999984 665543
No 347
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=37.18 E-value=62 Score=26.26 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=29.9
Q ss_pred CCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEEC
Q 012735 261 PKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVR 299 (457)
Q Consensus 261 ~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~ 299 (457)
...+|++++||......+.++.+++.+.. +.++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~~-~~~ivlv~~ 87 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALGP-DRQVYLVNP 87 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcCC-CCEEEEEEC
Confidence 45789999999999788888888888853 567766554
No 348
>PRK08181 transposase; Validated
Probab=37.13 E-value=61 Score=29.56 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=29.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+..++++..+|.|=..-..++++++.++|+.|.|++.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence 4567888888888888888888888888888877765
No 349
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=37.10 E-value=44 Score=22.93 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.9
Q ss_pred HHHHHHHHHHCCCeEEEEeCC
Q 012735 23 MLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 23 ~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
-+..|..|+++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 467899999999999998764
No 350
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.94 E-value=35 Score=31.18 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=38.0
Q ss_pred HhhhcCCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhc
Q 012735 333 QEVLAHPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMV 407 (457)
Q Consensus 333 ~~lL~~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~ 407 (457)
.++...+++ +|+=||=||++.+++. ++|++.+-.. .+|-.. ..+++++.+++.++++
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn~G--------------~lGFL~--~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGINRG--------------NLGFLT--DIDPKNAYEQLEACLE 97 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeCC--------------CCcccc--cCCHHHHHHHHHHHHh
Confidence 444445677 9999999999998663 6787655321 122111 3577888888888887
No 351
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=36.87 E-value=93 Score=32.14 Aligned_cols=28 Identities=14% Similarity=0.267 Sum_probs=22.4
Q ss_pred CCCCCCcccccC------hhHHHHHHhhCCcccccC
Q 012735 338 HPAVGAFWTHNG------WNSTLESICEGIPMICMP 367 (457)
Q Consensus 338 ~~~~~~~I~hgG------~~s~~eal~~gvP~v~~P 367 (457)
.+.+ +++|.| .+.+.+|...++|+|++-
T Consensus 63 ~~gv--~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 63 KVGV--CVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CCEE--EEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 3445 888877 458899999999999884
No 352
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=36.74 E-value=63 Score=29.25 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=32.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++|.|+.-||-|-..-...||..|+++|++|.++-..
T Consensus 2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD~D 38 (270)
T cd02040 2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVGCD 38 (270)
T ss_pred cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEEcC
Confidence 3677777778899999999999999999999998765
No 353
>CHL00194 ycf39 Ycf39; Provisional
Probab=36.72 E-value=66 Score=30.00 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=23.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+|+++. +.|. --..|+++|.++||+|+.++-.
T Consensus 1 MkIlVtG--atG~--iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVIG--ATGT--LGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEEC--CCcH--HHHHHHHHHHHCCCeEEEEEcC
Confidence 3666654 3343 3456889999999999999864
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=36.25 E-value=86 Score=28.65 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+..|+|+..+|-|-..-...||..|++.|+.|.++...
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 45667777778899999999999999999999999876
No 355
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=36.22 E-value=98 Score=26.44 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=25.3
Q ss_pred eEEEeCCCc-chHHHHHhHcCCCeEEEecchHHHH
Q 012735 106 ACLISDAML-PFTQAVADSLKLPRIVLRTGGASSF 139 (457)
Q Consensus 106 Dlvi~D~~~-~~~~~~A~~l~iP~v~~~~~~~~~~ 139 (457)
.++|..++- +++..+|+++++|+|.+.|......
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~ 95 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYE 95 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHH
Confidence 366655554 7888899999999999887755443
No 356
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=35.78 E-value=54 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++|+++..|.-| ...++.|.+.|++|+++.+.
T Consensus 9 ~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 35688888776533 56789999999999999864
No 357
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=35.58 E-value=93 Score=27.23 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhccCCCCeeEEEeCCCc---chHHHHHhHcCCCeEEEe
Q 012735 88 PFRDCLAKLLADVEEEPIACLISDAML---PFTQAVADSLKLPRIVLR 132 (457)
Q Consensus 88 ~~~~~l~~l~~~~~~~~pDlvi~D~~~---~~~~~~A~~l~iP~v~~~ 132 (457)
.++..++.+.+ -.+.+.|..+ ..+..+|..+|+|++.-.
T Consensus 107 ~m~~vl~~l~~------~gl~FvDS~T~~~s~a~~~A~~~gvp~~~rd 148 (213)
T PF04748_consen 107 AMRWVLEVLKE------RGLFFVDSRTTPRSVAPQVAKELGVPAARRD 148 (213)
T ss_dssp HHHHHHHHHHH------TT-EEEE-S--TT-SHHHHHHHCT--EEE-S
T ss_pred HHHHHHHHHHH------cCCEEEeCCCCcccHHHHHHHHcCCCEEeec
Confidence 34445555553 2788998876 567889999999998843
No 358
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=35.43 E-value=3.1e+02 Score=24.15 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCcEEEEEcCCCc-cCHHH---HHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCCCCCCccCHHHHHHH
Q 012735 5 KGRRLVLFPLPLQ-GHISP---MLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSASEASTDDLVAFVSL 80 (457)
Q Consensus 5 ~~~~il~~~~~~~-gH~~p---~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 80 (457)
++..|++.+..+. .-..| +.+|++.|.++|..|.++.++... ..+ ....+..+....
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~-~~~-----~~~~~~~~~~~~------------- 164 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQ-EKE-----IADQIAAGLQNP------------- 164 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHH-HHH-----HHHHHHTTHTTT-------------
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHH-HHH-----HHHHHHHhcccc-------------
Confidence 4556777776654 33333 689999999999888777775210 000 000000000000
Q ss_pred HHHhc-chhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecch
Q 012735 81 LNTKC-LVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGG 135 (457)
Q Consensus 81 ~~~~~-~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~ 135 (457)
....+ ...+.+ +..+++ ..|++|+. ..+...+|..+|+|+|.+....
T Consensus 165 ~~~~~~~~~l~e-~~ali~-----~a~~~I~~--Dtg~~HlA~a~~~p~v~lfg~t 212 (247)
T PF01075_consen 165 VINLAGKTSLRE-LAALIS-----RADLVIGN--DTGPMHLAAALGTPTVALFGPT 212 (247)
T ss_dssp TEEETTTS-HHH-HHHHHH-----TSSEEEEE--SSHHHHHHHHTT--EEEEESSS
T ss_pred eEeecCCCCHHH-HHHHHh-----cCCEEEec--CChHHHHHHHHhCCEEEEecCC
Confidence 00000 112222 233333 56999977 3667889999999999987653
No 359
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=35.29 E-value=3.7e+02 Score=27.78 Aligned_cols=34 Identities=6% Similarity=-0.033 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
.++|+++..+ .-...++++..+.|++|.++....
T Consensus 22 ~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~ 55 (577)
T PLN02948 22 ETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLE 55 (577)
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4678888776 344666777788899999998753
No 360
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.98 E-value=1.1e+02 Score=29.50 Aligned_cols=38 Identities=13% Similarity=0.316 Sum_probs=33.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.-|+|+..-+.|-..-+-.+|..++++|+.|.+++..
T Consensus 101 psVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaD 138 (483)
T KOG0780|consen 101 PSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCAD 138 (483)
T ss_pred CcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeec
Confidence 34477888888999999999999999999999999986
No 361
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=34.97 E-value=47 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=21.1
Q ss_pred CeeEEEeCCCc---chHHH----HHhHcCCCeEEEecc
Q 012735 104 PIACLISDAML---PFTQA----VADSLKLPRIVLRTG 134 (457)
Q Consensus 104 ~pDlvi~D~~~---~~~~~----~A~~l~iP~v~~~~~ 134 (457)
.||+|+.|..- +-... +.-.+++|+|.+.=.
T Consensus 93 ~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 93 KPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred CCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 79999999864 22233 444568899887543
No 362
>PRK12367 short chain dehydrogenase; Provisional
Probab=34.75 E-value=59 Score=29.11 Aligned_cols=32 Identities=6% Similarity=0.008 Sum_probs=23.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+.++++.++. .--.++|++|+++|++|.++..
T Consensus 15 k~~lITGas~---gIG~ala~~l~~~G~~Vi~~~r 46 (245)
T PRK12367 15 KRIGITGASG---ALGKALTKAFRAKGAKVIGLTH 46 (245)
T ss_pred CEEEEEcCCc---HHHHHHHHHHHHCCCEEEEEEC
Confidence 4555555443 3457899999999999988765
No 363
>PRK11914 diacylglycerol kinase; Reviewed
Probab=34.67 E-value=70 Score=29.74 Aligned_cols=81 Identities=10% Similarity=0.021 Sum_probs=46.5
Q ss_pred EEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCC
Q 012735 264 VIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGA 343 (457)
Q Consensus 264 vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~ 343 (457)
++.++--|-.....+.+.++.+.++..+..+.+..... +....+ + + ........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~-----------~~~~~~-------~---a-~~~~~~~~d~-- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD-----------AHDARH-------L---V-AAALAKGTDA-- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC-----------HHHHHH-------H---H-HHHHhcCCCE--
Confidence 34444333222234667778888888777655444321 111110 0 0 0111223455
Q ss_pred cccccChhHHHHHHh----hCCcccccCc
Q 012735 344 FWTHNGWNSTLESIC----EGIPMICMPC 368 (457)
Q Consensus 344 ~I~hgG~~s~~eal~----~gvP~v~~P~ 368 (457)
+|--||=||+.|++. .++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 999999999999973 4789999996
No 364
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=34.55 E-value=89 Score=32.13 Aligned_cols=28 Identities=14% Similarity=0.451 Sum_probs=22.6
Q ss_pred CCCCCCcccccChh------HHHHHHhhCCcccccC
Q 012735 338 HPAVGAFWTHNGWN------STLESICEGIPMICMP 367 (457)
Q Consensus 338 ~~~~~~~I~hgG~~------s~~eal~~gvP~v~~P 367 (457)
.+.+ +++|.|-| .+.+|...++|+|++-
T Consensus 78 ~~gv--~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 78 KPGV--VIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CCeE--EEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3455 89998855 6789999999999884
No 365
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=34.51 E-value=48 Score=27.49 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=21.5
Q ss_pred CCCCCcccccCh------hHHHHHHhhCCcccccCc
Q 012735 339 PAVGAFWTHNGW------NSTLESICEGIPMICMPC 368 (457)
Q Consensus 339 ~~~~~~I~hgG~------~s~~eal~~gvP~v~~P~ 368 (457)
+.+ +++++|- +.+.+|...++|+|++.-
T Consensus 60 ~gv--~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGA--LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEE--EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 444 7777774 467889999999999964
No 366
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=34.50 E-value=38 Score=31.35 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|||+++..|..| ..+|..|.+.||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 578888777655 4678889999999999987
No 367
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=34.30 E-value=95 Score=26.86 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCcEEEEEc--CCCccCHHHHHHHHHHHHH-CCCeEEEEeCC
Q 012735 5 KGRRLVLFP--LPLQGHISPMLQLANILHS-QGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~--~~~~gH~~p~l~la~~L~~-~Gh~Vt~~~~~ 43 (457)
+++|++.++ -++-|-..-...||..|++ .|++|.++-..
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 345554444 4566999999999999997 69999998665
No 368
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.07 E-value=58 Score=27.42 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=25.2
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHH-CCCeEEEEeCC
Q 012735 9 LVLFPLPLQGHISP-MLQLANILHS-QGFTITIIHTS 43 (457)
Q Consensus 9 il~~~~~~~gH~~p-~l~la~~L~~-~Gh~Vt~~~~~ 43 (457)
|+..-.++ ||... .+.+.+.|++ +||+|.++.++
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~ 37 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSK 37 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECH
Confidence 33333444 77755 8899999985 59999999986
No 369
>PRK06526 transposase; Provisional
Probab=33.98 E-value=45 Score=30.11 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+.+++++..+|.|=..-..+|+.++.++|+.|.|.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATA 134 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhH
Confidence 4578888888889999999999999999999877544
No 370
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=33.96 E-value=2.6e+02 Score=22.70 Aligned_cols=35 Identities=14% Similarity=0.269 Sum_probs=31.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|.+...++.|-...+..++..|.++|++|.++...
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 67778888899999999999999999999998765
No 371
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=33.75 E-value=97 Score=28.50 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCCCcccccChhHHH
Q 012735 275 VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVGAFWTHNGWNSTL 354 (457)
Q Consensus 275 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~ 354 (457)
.+.+..+++.+|+.+.+.+.||...++.. -. ++.++++...+-++|+. ||-..-..+++
T Consensus 46 s~~~Ra~dL~~a~~d~~i~aI~~~rGG~g-----------a~--------rlL~~ld~~~~~~~pK~--~iGySDiTaL~ 104 (282)
T cd07025 46 TDEERAADLNAAFADPEIKAIWCARGGYG-----------AN--------RLLPYLDYDLIRANPKI--FVGYSDITALH 104 (282)
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCcCC-----------HH--------HhhhhCCHHHHhhCCeE--EEEecHHHHHH
Confidence 45677888999999989999999988741 11 45555665655566766 77666666666
Q ss_pred HHHhh--CCcccccCcc
Q 012735 355 ESICE--GIPMICMPCF 369 (457)
Q Consensus 355 eal~~--gvP~v~~P~~ 369 (457)
-+++. |++.+-=|..
T Consensus 105 ~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 105 LALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHhcCceEEECccc
Confidence 66653 5665555543
No 372
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=33.72 E-value=55 Score=32.58 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=30.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
++||++...++.+ .+=...+++.|.++|++|.++.++.
T Consensus 70 ~k~IllgVtGsIA-ayka~~lvr~L~k~G~~V~VvmT~s 107 (475)
T PRK13982 70 SKRVTLIIGGGIA-AYKALDLIRRLKERGAHVRCVLTKA 107 (475)
T ss_pred CCEEEEEEccHHH-HHHHHHHHHHHHhCcCEEEEEECcC
Confidence 4677777766644 4578899999999999999999873
No 373
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=33.70 E-value=2.1e+02 Score=25.83 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=35.4
Q ss_pred ChHhhhcCCCCCCcc--c--ccChhHHHHHHhhCCcccccCcc--chhhHHHHHHHhhhccceecCC
Q 012735 331 PQQEVLAHPAVGAFW--T--HNGWNSTLESICEGIPMICMPCF--TDQKVNARYVSDVWKVGLQLEN 391 (457)
Q Consensus 331 pq~~lL~~~~~~~~I--~--hgG~~s~~eal~~gvP~v~~P~~--~DQ~~na~~v~~~lG~g~~l~~ 391 (457)
...+++..+|+ +| | +...--+..|+.+|+|+++-+.. .+|...-...+ . ++++.+..
T Consensus 53 dl~~ll~~~Dv--Vid~t~p~~~~~~~~~al~~G~~vvigttG~s~~~~~~l~~aa-~-~~~v~~s~ 115 (257)
T PRK00048 53 DLEAVLADADV--LIDFTTPEATLENLEFALEHGKPLVIGTTGFTEEQLAELEEAA-K-KIPVVIAP 115 (257)
T ss_pred CHHHhccCCCE--EEECCCHHHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHh-c-CCCEEEEC
Confidence 34556666666 55 2 22345667789999999988764 33443334433 3 78877765
No 374
>PRK04296 thymidine kinase; Provisional
Probab=33.70 E-value=2.4e+02 Score=24.00 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=28.8
Q ss_pred EEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 8 RLVLFP-LPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 8 ~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.|.+++ .++.|=..-.+.++.++..+|..|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 344555 44889999999999999999999998855
No 375
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=33.61 E-value=1.4e+02 Score=26.53 Aligned_cols=41 Identities=10% Similarity=0.204 Sum_probs=29.0
Q ss_pred ccccCCCCCCcEEEEEecccccCCHHHHHHHHHHHhhCCCCeE
Q 012735 253 IAWLDKQAPKSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFL 295 (457)
Q Consensus 253 ~~~l~~~~~~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 295 (457)
.+++. +.++|+||-.-|......+..+.+.+++++++..+.
T Consensus 25 ~~~~~--~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~ 65 (233)
T PRK05282 25 AELLA--GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVT 65 (233)
T ss_pred HHHHc--CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 34544 245799998877665556777789999999887744
No 376
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=33.58 E-value=51 Score=32.93 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.+.++|+++..+..| +..|..|+++||+|+++-..
T Consensus 141 ~~~~~VvIIGaGpAG-----l~aA~~l~~~G~~V~vie~~ 175 (471)
T PRK12810 141 RTGKKVAVVGSGPAG-----LAAADQLARAGHKVTVFERA 175 (471)
T ss_pred CCCCEEEEECcCHHH-----HHHHHHHHhCCCcEEEEecC
Confidence 456789999887444 77899999999999998753
No 377
>PHA02754 hypothetical protein; Provisional
Probab=33.41 E-value=82 Score=20.67 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=18.3
Q ss_pred HHHHHhcccchHHHHHHHHHHHHHHH
Q 012735 401 TIRRVMVEKQGEEIRSRIFRLKEKAN 426 (457)
Q Consensus 401 ai~~il~~~~~~~~~~~a~~l~~~~~ 426 (457)
.+.+++.+ +.|++..+++++.+.
T Consensus 6 Ei~k~i~e---K~Fke~MRelkD~LS 28 (67)
T PHA02754 6 EIPKAIME---KDFKEAMRELKDILS 28 (67)
T ss_pred HHHHHHHH---hHHHHHHHHHHHHHh
Confidence 34556667 789999999999987
No 378
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.35 E-value=2.3e+02 Score=23.47 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=61.4
Q ss_pred ChHhhh-cCCCCCCcccccC---hhHHHHHHhhCCcccccCc-cchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHH
Q 012735 331 PQQEVL-AHPAVGAFWTHNG---WNSTLESICEGIPMICMPC-FTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRR 404 (457)
Q Consensus 331 pq~~lL-~~~~~~~~I~hgG---~~s~~eal~~gvP~v~~P~-~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~ 404 (457)
+|.+|+ +||++.+-+--.| .-|+.|-..+|.=.+.=-- .-=+..|+++.++ .|.=-.+.- ..+.++|.++..+
T Consensus 64 ~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~ 142 (176)
T COG3195 64 ERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFER 142 (176)
T ss_pred HHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHH
Confidence 345544 5888733222222 3467777777765432110 0115679999999 698666654 5789999999988
Q ss_pred HhcccchHHHHHHHHHHHHHHH
Q 012735 405 VMVEKQGEEIRSRIFRLKEKAN 426 (457)
Q Consensus 405 il~~~~~~~~~~~a~~l~~~~~ 426 (457)
=|.|.+...++.++.++.+...
T Consensus 143 Rl~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 143 RLDNDREQEFATALAEIERIAL 164 (176)
T ss_pred HhcccHHHHHHHHHHHHHHHHH
Confidence 8888655678888888777654
No 379
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=33.29 E-value=96 Score=28.21 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.9
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFP-LPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.|+|.+ .++-|-..-.+.||..|++.|++|.++-..
T Consensus 104 ~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 104 KALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 3444444 345588888999999999999999988653
No 380
>PLN02778 3,5-epimerase/4-reductase
Probab=33.28 E-value=93 Score=28.78 Aligned_cols=31 Identities=10% Similarity=0.069 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEE
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITI 39 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~ 39 (457)
.+|||++....++ --..|++.|.++||+|++
T Consensus 8 ~~~kiLVtG~tGf----iG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 8 ATLKFLIYGKTGW----IGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCeEEEECCCCH----HHHHHHHHHHhCCCEEEE
Confidence 3678887765553 223678899999999975
No 381
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=33.28 E-value=55 Score=28.94 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=24.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+++++..+-. ...+|+.|.+.||+|+.+-..
T Consensus 1 m~iiIiG~G~v-----G~~va~~L~~~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRV-----GRSVARELSEEGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHH-----HHHHHHHHHhCCCceEEEEcC
Confidence 45666655543 367999999999999998875
No 382
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.27 E-value=1e+02 Score=22.01 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=28.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIH 41 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 41 (457)
+++...++.|=..-...+|..|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 456666677999999999999999999998877
No 383
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=33.17 E-value=80 Score=28.86 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=32.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++|.|+.=||-|-..-.+.||..|+++|+.|.++-..
T Consensus 2 ~~i~~~gKGGVGKTT~a~nLA~~La~~G~rVLliD~D 38 (279)
T PRK13230 2 RKFCFYGKGGIGKSTTVCNIAAALAESGKKVLVVGCD 38 (279)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 4677887778899999999999999999999998665
No 384
>PLN00198 anthocyanidin reductase; Provisional
Probab=33.01 E-value=91 Score=29.32 Aligned_cols=38 Identities=8% Similarity=0.049 Sum_probs=26.4
Q ss_pred CCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 2 DQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 2 ~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+|..+++|++....+ .--..|+++|.++||+|++++..
T Consensus 5 ~~~~~~~vlItG~~G----fIG~~l~~~L~~~g~~V~~~~r~ 42 (338)
T PLN00198 5 TPTGKKTACVIGGTG----FLASLLIKLLLQKGYAVNTTVRD 42 (338)
T ss_pred cCCCCCeEEEECCch----HHHHHHHHHHHHCCCEEEEEECC
Confidence 455567776665443 34456899999999999876653
No 385
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=32.98 E-value=56 Score=20.36 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHH
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLK 422 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~ 422 (457)
|++.|.+||..+.++. -+++++|++.+
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~yg 27 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKYG 27 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHHC
Confidence 5788999999998663 35666666543
No 386
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=32.91 E-value=78 Score=28.23 Aligned_cols=39 Identities=10% Similarity=0.051 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..++|+++....--=..-+-+....|.++||+|++++-.
T Consensus 9 ~~~~vL~v~aHPDDe~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 9 DPLRVLVVFAHPDDEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred cCCcEEEEecCCcchhhccHHHHHHHHHCCCeEEEEEcc
Confidence 356676665444444566777888889999999998864
No 387
>COG2733 Predicted membrane protein [Function unknown]
Probab=32.85 E-value=1.2e+02 Score=29.03 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=30.0
Q ss_pred hCCcc-cccCccchhhHHHHHHHhhhccceecCC-CCCHHHHHHHHHHH
Q 012735 359 EGIPM-ICMPCFTDQKVNARYVSDVWKVGLQLEN-GLKREEIEKTIRRV 405 (457)
Q Consensus 359 ~gvP~-v~~P~~~DQ~~na~~v~~~lG~g~~l~~-~~~~~~l~~ai~~i 405 (457)
+.+|+ |.+|++.==|.|=.|+.+ ++|.-+.. -++++.|.+.+++.
T Consensus 62 Fr~PlgipipHTAIIprNKdri~e--~l~~FV~~~fLs~e~i~~Kl~~~ 108 (415)
T COG2733 62 FRHPLGIPIPHTAIIPRNKDRIGE--NLGQFVQNNFLSPESINEKLRRA 108 (415)
T ss_pred HhcCCCCCCcchhhccccHHHHHH--HHHHHHHHcccChHHHHHHHHhc
Confidence 55777 667887777777777776 55555544 56777777666543
No 388
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=32.85 E-value=76 Score=24.76 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+...|+++++++. +...+..++.|.+.|.+++++...
T Consensus 8 ~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~~ 44 (124)
T PF02780_consen 8 EGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDLR 44 (124)
T ss_dssp SSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEeeE
Confidence 4567889988876 467899999999999999998874
No 389
>PRK08939 primosomal protein DnaI; Reviewed
Probab=32.81 E-value=87 Score=29.20 Aligned_cols=38 Identities=24% Similarity=0.243 Sum_probs=33.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..-+++...+|.|=..-+.++|++|.++|..|+|+..+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFP 193 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence 45688888888899999999999999999999988774
No 390
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=32.78 E-value=1.1e+02 Score=28.21 Aligned_cols=31 Identities=16% Similarity=0.210 Sum_probs=23.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+++.. .|.+- ..|+++|.++||+|..+...
T Consensus 3 ILVtG~--tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 3 ILVTGG--AGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred EEEEcC--cccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 455443 34333 78999999999999999974
No 391
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=32.77 E-value=96 Score=27.68 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+++|+++...+ .--..+++.|.++||+|+.++.
T Consensus 17 ~~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATG----RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCCc----HHHHHHHHHHHhCCCEEEEEec
Confidence 56677766443 4456889999999999988764
No 392
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=32.77 E-value=5.2e+02 Score=25.90 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=24.1
Q ss_pred ccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 17 QGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 17 ~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
-|-..-..+|++.|+++|.+|..+-+.
T Consensus 10 vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 10 AGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 488899999999999999999987764
No 393
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=32.71 E-value=3.5e+02 Score=24.30 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=22.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
++|+++..-+-| -.||+.|.++|+.|++-+.
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Sva 33 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLA 33 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEc
Confidence 467776555444 4789999999998887554
No 394
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=32.66 E-value=52 Score=29.13 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHCCCeEEEEeC
Q 012735 22 PMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 22 p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
-..++|++|+++|++|+++..
T Consensus 27 IG~AIA~~la~~Ga~Vvlv~~ 47 (227)
T TIGR02114 27 LGKIITETFLSAGHEVTLVTT 47 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcC
Confidence 467899999999999998754
No 395
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=32.44 E-value=43 Score=31.65 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||.|+..|..| ..+|..|+++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 689999777665 46789999999999998863
No 396
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=32.43 E-value=79 Score=28.66 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=30.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.|.+.--||-|-..-...||..|+++|++|.++-..
T Consensus 3 ~iIav~~KGGVGKTT~~~nLA~~la~~G~kVLliD~D 39 (270)
T PRK13185 3 LVLAVYGKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39 (270)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 3556666667799999999999999999999998654
No 397
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=32.10 E-value=1.3e+02 Score=26.87 Aligned_cols=38 Identities=13% Similarity=0.179 Sum_probs=33.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCC-CeEEEEeCCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQG-FTITIIHTSF 44 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~G-h~Vt~~~~~~ 44 (457)
++|++..-++.|-..-.--|+++|.++| ++|.++-...
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 5899999999999888888799999986 9999998864
No 398
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=32.01 E-value=63 Score=30.09 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=39.0
Q ss_pred hcCCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 336 LAHPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 336 L~~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
...+++ +|+=||=||++.+++. ++|++.+... .+|-.. ...++++.++++++++.
T Consensus 70 ~~~~D~--vi~lGGDGT~L~aar~~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 128 (306)
T PRK03372 70 ADGCEL--VLVLGGDGTILRAAELARAADVPVLGVNLG--------------HVGFLA--EAEAEDLDEAVERVVDR 128 (306)
T ss_pred ccCCCE--EEEEcCCHHHHHHHHHhccCCCcEEEEecC--------------CCceec--cCCHHHHHHHHHHHHcC
Confidence 334566 9999999999999764 7788666541 122222 35678888999988876
No 399
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=31.95 E-value=66 Score=30.13 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++|.++..+++| -+||+.|++.||+|++....
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3688999988887 48999999999999999875
No 400
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=31.88 E-value=75 Score=32.61 Aligned_cols=90 Identities=17% Similarity=0.172 Sum_probs=51.2
Q ss_pred EecccccCC-HHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccC-hHh---------hh
Q 012735 268 SFGSIAAVS-EAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAP-QQE---------VL 336 (457)
Q Consensus 268 s~Gs~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vp-q~~---------lL 336 (457)
|.||..... ....+.+++.|++.|.+.+..+++... ..+-+.+.+ .++++++.-.- +.+ +-
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~L~~~GV~~vFgvpG~~~------~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~t 74 (564)
T PRK08155 3 SSGTTSTRKRFTGAELIVRLLERQGIRIVTGIPGGAI------LPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTT 74 (564)
T ss_pred CCCCCccCCcccHHHHHHHHHHHcCCCEEEeCCCccc------HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHc
Confidence 345555423 245667889999999998888877631 111122211 01222221111 111 22
Q ss_pred cCCCCCCcccccCh------hHHHHHHhhCCcccccC
Q 012735 337 AHPAVGAFWTHNGW------NSTLESICEGIPMICMP 367 (457)
Q Consensus 337 ~~~~~~~~I~hgG~------~s~~eal~~gvP~v~~P 367 (457)
..+.+ +++|.|- +.+.+|...++|+|++-
T Consensus 75 g~~gv--~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 75 GKPAV--CMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCeE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 33444 8888774 47899999999999985
No 401
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=31.80 E-value=79 Score=31.21 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..+||+++..+..| +++++.|.++|++|++.-..
T Consensus 6 ~~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~ 39 (448)
T COG0771 6 QGKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDR 39 (448)
T ss_pred cCCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCC
Confidence 37899999999888 89999999999999998854
No 402
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=31.78 E-value=94 Score=29.34 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=32.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++|++..-++.|-..-...||..|+++|+.|.++...
T Consensus 31 ~~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 31 TQIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 45567777778899999999999999999999998764
No 403
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=31.76 E-value=70 Score=31.84 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.+.++|+|+..+..| +.++|+.|.++|++|+..-.
T Consensus 5 ~~~~~v~viG~G~sG----~s~~a~~L~~~G~~V~~~D~ 39 (461)
T PRK00421 5 RRIKRIHFVGIGGIG----MSGLAEVLLNLGYKVSGSDL 39 (461)
T ss_pred CCCCEEEEEEEchhh----HHHHHHHHHhCCCeEEEECC
Confidence 345689999998766 45589999999999987654
No 404
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=31.63 E-value=83 Score=24.32 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=29.4
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
++..+.++..|.....-++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5667777889999999999999999999998855
No 405
>PRK07236 hypothetical protein; Provisional
Probab=31.54 E-value=92 Score=30.02 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=30.1
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|...++++|+++..+ .--+.+|..|+++|++|+++=..
T Consensus 1 ~~~~~~~~ViIVGaG-----~aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 1 MTHMSGPRAVVIGGS-----LGGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCCCeEEEECCC-----HHHHHHHHHHHhCCCCEEEEecC
Confidence 444566889888776 45688999999999999998753
No 406
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.46 E-value=1.3e+02 Score=24.84 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=24.8
Q ss_pred CeeEEEeCCCc----------chHHHHHhHcCCCeEEEecch
Q 012735 104 PIACLISDAML----------PFTQAVADSLKLPRIVLRTGG 135 (457)
Q Consensus 104 ~pDlvi~D~~~----------~~~~~~A~~l~iP~v~~~~~~ 135 (457)
.||+|++..-+ .-+..+|+++|||++-.+...
T Consensus 124 ~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~t 165 (219)
T KOG0081|consen 124 NPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACT 165 (219)
T ss_pred CCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecccc
Confidence 99999987643 235679999999999876553
No 407
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=31.37 E-value=1e+02 Score=24.54 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+.||++...++.+|-..---++..|...|++|.-...
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~ 38 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPL 38 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCC
Confidence 5789999999999999998889999999999998776
No 408
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=31.36 E-value=61 Score=24.58 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCC
Q 012735 21 SPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 21 ~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.|.+.|+++|.++|.+|.+.=+-
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~ 39 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPY 39 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TT
T ss_pred CHHHHHHHHHHHCCCEEEEECCc
Confidence 79999999999999998887764
No 409
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=31.28 E-value=62 Score=29.41 Aligned_cols=53 Identities=11% Similarity=0.221 Sum_probs=35.8
Q ss_pred CCCCCcccccChhHHHHHHhh-----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 339 PAVGAFWTHNGWNSTLESICE-----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 339 ~~~~~~I~hgG~~s~~eal~~-----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+++ +|+=||=||++.+++. .+|++.+-..+ + +|-. ...+++++.+++.+++++
T Consensus 40 ~D~--vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G----------~---lGFL--~~~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 40 ANI--IVSIGGDGTFLQAVRKTGFREDCLYAGISTKD----------Q---LGFY--CDFHIDDLDKMIQAITKE 97 (264)
T ss_pred ccE--EEEECCcHHHHHHHHHhcccCCCeEEeEecCC----------C---CeEc--ccCCHHHHHHHHHHHHcC
Confidence 566 9999999999999884 45654433300 1 1111 146778899999888876
No 410
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=31.26 E-value=6.2e+02 Score=28.53 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQ--GH----ISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~--gH----~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++||+++..+.. |+ =+-.+.++++|++.||+|.++...
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~n 598 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNN 598 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCC
Confidence 5788998887642 32 246888999999999999888764
No 411
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=31.17 E-value=28 Score=31.23 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCCCCcccccChhHHHHHHhh----CCcccccCc
Q 012735 339 PAVGAFWTHNGWNSTLESICE----GIPMICMPC 368 (457)
Q Consensus 339 ~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~ 368 (457)
+++ +|+-||=||++.+++. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999998774 578766543
No 412
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=31.17 E-value=4.5e+02 Score=26.46 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=68.1
Q ss_pred ccccccChHh---hhcCCCCCCccc---ccChhHH-HHHHhhCC----cccccCccchhhHHHHHHHhhhccceecCCCC
Q 012735 325 HLVKWAPQQE---VLAHPAVGAFWT---HNGWNST-LESICEGI----PMICMPCFTDQKVNARYVSDVWKVGLQLENGL 393 (457)
Q Consensus 325 ~~~~~vpq~~---lL~~~~~~~~I~---hgG~~s~-~eal~~gv----P~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~ 393 (457)
++...+|+.+ +++.+|+ ++. .-|+|-+ .|.+.++. |+|+=-+. -|. +. |.-++.++. .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefa-----Gaa--~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFA-----GAA--VE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEeccc-----cch--hh-cCCCEEECC-C
Confidence 4457788655 6667777 543 4588855 49988877 33332222 111 33 455677766 7
Q ss_pred CHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcc
Q 012735 394 KREEIEKTIRRVMVEKQGEEIRSRIFRLKEKANHSWKQGRSSFESINSLVTHILSLE 450 (457)
Q Consensus 394 ~~~~l~~ai~~il~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (457)
+.++++++|.++|+... .+=+++.+++.+.++ . .....=++.+++.+.+..
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~----~-~d~~~W~~~fl~~l~~~~ 484 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVN----Y-YDVQRWADEFLAAVSPQA 484 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh----h-CCHHHHHHHHHHHhhhcc
Confidence 99999999999998732 233556666666664 2 345666777777776543
No 413
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase. This bifunctional isomerase is a member of the larger PGI superfamily and only distantly related to other glucose-6-phosphate isomerases. The family is limited to the archaea.
Probab=31.11 E-value=4.3e+02 Score=24.67 Aligned_cols=56 Identities=14% Similarity=0.161 Sum_probs=34.6
Q ss_pred EEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCCCC
Q 012735 11 LFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENLSA 66 (457)
Q Consensus 11 ~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~~~ 66 (457)
++.....|...-++..++...++|..|..+|.........+..|...+.+|.+.+.
T Consensus 70 vI~iS~SG~t~e~~~a~~~A~~~g~~ii~iT~~g~L~~~a~~~~~~~i~vP~~~~~ 125 (308)
T TIGR02128 70 LIAVSYSGNTEETLSAVEEAKKKGAKVIAITSGGRLEEMAKERGLDVIKIPKGLQP 125 (308)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHcCCEEEEECCCcHHHHHHHhcCCeEEEcCCCCCC
Confidence 33444446666677788888899999888886321111111136778888876553
No 414
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=31.00 E-value=1e+02 Score=26.37 Aligned_cols=29 Identities=14% Similarity=0.163 Sum_probs=23.1
Q ss_pred CeeEEEeCCC--cchHHHHHhHcCCCeEEEe
Q 012735 104 PIACLISDAM--LPFTQAVADSLKLPRIVLR 132 (457)
Q Consensus 104 ~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~ 132 (457)
++|+|++-.. .+.+..+|..+|+|++...
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vR 80 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFAR 80 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEE
Confidence 7899985433 3678889999999999964
No 415
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=30.89 E-value=79 Score=29.95 Aligned_cols=33 Identities=12% Similarity=-0.044 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.++|++....+ .--..+++.|.++||+|+.+..
T Consensus 4 ~k~ilItGatG----~IG~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 4 GKKVLVTGHTG----FKGSWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CCEEEEECCCC----hhHHHHHHHHHHCCCEEEEEeC
Confidence 35666665433 2337889999999999987764
No 416
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.82 E-value=1e+02 Score=30.02 Aligned_cols=22 Identities=18% Similarity=0.214 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHCCCeEEEEeCC
Q 012735 22 PMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 22 p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
-..++|++|.++|++|+++...
T Consensus 216 ~G~aiA~~l~~~Ga~V~~v~~~ 237 (399)
T PRK05579 216 MGYALARAAARRGADVTLVSGP 237 (399)
T ss_pred HHHHHHHHHHHCCCEEEEeCCC
Confidence 4678999999999999998864
No 417
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=30.70 E-value=1.5e+02 Score=28.91 Aligned_cols=40 Identities=15% Similarity=0.272 Sum_probs=35.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++..|+++..-+.|-..-+-.||+.|.++|+.|.+++..
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD 137 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAAD 137 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecc
Confidence 3456788888889999999999999999999999999986
No 418
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.62 E-value=72 Score=22.46 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCC
Q 012735 21 SPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 21 ~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
...+.+|..|+++|.+||++...
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHHHhCcEEEEEecc
Confidence 35689999999999999999985
No 419
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=30.60 E-value=76 Score=27.27 Aligned_cols=44 Identities=18% Similarity=0.154 Sum_probs=29.4
Q ss_pred HHHHHHHhhccCCCCeeEEEeCCCc---ch----HHHHHhHcCCCeEEEec
Q 012735 90 RDCLAKLLADVEEEPIACLISDAML---PF----TQAVADSLKLPRIVLRT 133 (457)
Q Consensus 90 ~~~l~~l~~~~~~~~pDlvi~D~~~---~~----~~~~A~~l~iP~v~~~~ 133 (457)
.++++.+..+.-+|+||+|++|... +- ++.+.-..|+|.|.+.-
T Consensus 101 l~~L~~v~~erh~fr~dvilvDGnG~lHprGfGlACHlGvL~~lp~iGVaK 151 (261)
T KOG4417|consen 101 LDFLKSVITERHEFRPDVILVDGNGELHPRGFGLACHLGVLSGLPSIGVAK 151 (261)
T ss_pred HHHHHhcccccCCccccEEEEcCCceEcccccchhhhhhHhcCCCccchhc
Confidence 3456666655556799999999753 22 34466677889888643
No 420
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=30.55 E-value=6.9e+02 Score=28.11 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCCc--cC----HHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 4 RKGRRLVLFPLPLQ--GH----ISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 4 ~~~~~il~~~~~~~--gH----~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.+++||+++..+.. |+ =.-.+.++++|.++||+|.++...
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~vI~v~~n 597 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYETIMINYN 597 (1050)
T ss_pred CCCceEEEecCcccccccccccchHHHHHHHHHHhCCCEEEEEecC
Confidence 35678999987753 43 245788999999999999888764
No 421
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=30.54 E-value=89 Score=28.08 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=26.5
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 7 RRLVLFPLPLQ--GHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
.+|++++.++- |+ .+.+|+.|..+|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 57888887654 44 67889999999999999883
No 422
>PRK06270 homoserine dehydrogenase; Provisional
Probab=30.54 E-value=2.5e+02 Score=26.63 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=36.6
Q ss_pred ChHhhhcCCCCCCccc------ccC---hhHHHHHHhhCCcccc---cCccchhhHHHHHHHhhhccceec
Q 012735 331 PQQEVLAHPAVGAFWT------HNG---WNSTLESICEGIPMIC---MPCFTDQKVNARYVSDVWKVGLQL 389 (457)
Q Consensus 331 pq~~lL~~~~~~~~I~------hgG---~~s~~eal~~gvP~v~---~P~~~DQ~~na~~v~~~lG~g~~l 389 (457)
+..++|.+++...+|- |+| ..-+.+||.+|+++|+ -|....-....+..+++ |+.+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 4567776655544655 443 4566899999999999 47654333444444553 666554
No 423
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.49 E-value=1.2e+02 Score=26.65 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++|++.. +.|+ --..|++.|.++||+|+.++..
T Consensus 6 ~~~vlItG--asg~--iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 6 GRVALVTG--AARG--LGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCEEEEeC--CCch--HHHHHHHHHHHCCCeEEEEeCC
Confidence 34666643 3344 4578899999999999776553
No 424
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=30.48 E-value=1.4e+02 Score=25.55 Aligned_cols=37 Identities=19% Similarity=0.360 Sum_probs=29.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.|+|+..++.-|-.-...+++.|++.|-.|.+++-.
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 3378888887777767779999999999999988764
No 425
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=30.40 E-value=95 Score=30.80 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 3 QRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 3 ~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|.++++|+++..+ ..-+..|..|+++||+|+++-..
T Consensus 130 ~~~~~~V~IIG~G-----~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 130 PSTHKKVAVIGAG-----PAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCCCEEEEECcC-----HHHHHHHHHHHHCCCcEEEEecC
Confidence 3456789998876 34567899999999999999864
No 426
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=30.21 E-value=66 Score=32.05 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecC--CCCCCCCCCc---cCHHHHHHHHHHhcchhHHHHHHH
Q 012735 21 SPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQ--ENLSASEAST---DDLVAFVSLLNTKCLVPFRDCLAK 95 (457)
Q Consensus 21 ~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~ 95 (457)
.-.+.+|+.|.+.|+++. .|.. ....... .|+.+..+. .++|+-.+.. -.+.-.-..+.+.-.. + +++
T Consensus 11 ~~iv~lAk~L~~lGfeIi-ATgG-Tak~L~e-~GI~v~~Vsk~TgfPEil~GRVKTLHP~IhgGiLarr~~~---~-~~~ 83 (511)
T TIGR00355 11 TGIVEFAQGLVERGVELL-STGG-TAKLLAE-AGVPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILARRGDD---D-DAD 83 (511)
T ss_pred ccHHHHHHHHHHCCCEEE-Eech-HHHHHHH-CCCeEEEeecccCCchhhCCccccCCchhhhhhhcCCCch---H-HHH
Confidence 447899999999999983 4432 2222222 577777665 3555533222 2211111111221112 2 333
Q ss_pred HhhccCCCCeeEEEeCCCc
Q 012735 96 LLADVEEEPIACLISDAML 114 (457)
Q Consensus 96 l~~~~~~~~pDlvi~D~~~ 114 (457)
+.+..-. ..|+||++.+-
T Consensus 84 l~~~~I~-~IDlVvvNLYP 101 (511)
T TIGR00355 84 LEEHGIE-PIDLVVVNLYP 101 (511)
T ss_pred HHHcCCC-ceeEEEEeccC
Confidence 4333333 88999999653
No 427
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=30.16 E-value=4.7e+02 Score=28.86 Aligned_cols=34 Identities=26% Similarity=0.421 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.+|+++++.+. -...+++.|.+.|-+|..++..
T Consensus 319 ~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~ 352 (917)
T PRK14477 319 EGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQ 352 (917)
T ss_pred cCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCC
Confidence 356788876543 3567889999999999775553
No 428
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=30.13 E-value=53 Score=27.37 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=21.1
Q ss_pred hhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 372 QKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 372 Q~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
..+.+..-++ .|+|+.+ |+|+|.++|...++.
T Consensus 101 ~~d~~~Fe~~-cGVGV~V----T~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 101 PIDVAEFEKA-CGVGVVV----TPEQIEAAVEKYIEE 132 (164)
T ss_dssp G--HHHHHHT-TTTT--------HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHH-cCCCeEE----CHHHHHHHHHHHHHH
Confidence 3455666667 4999886 899999999999975
No 429
>PRK13057 putative lipid kinase; Reviewed
Probab=30.02 E-value=1.8e+02 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.163 Sum_probs=24.2
Q ss_pred cCCCCCCcccccChhHHHHHHh----hCCcccccCc
Q 012735 337 AHPAVGAFWTHNGWNSTLESIC----EGIPMICMPC 368 (457)
Q Consensus 337 ~~~~~~~~I~hgG~~s~~eal~----~gvP~v~~P~ 368 (457)
...++ +|--||=||+.|++. .++|+-++|.
T Consensus 49 ~~~d~--iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDL--VIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCE--EEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 34455 999999999999863 5789999996
No 430
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=30.00 E-value=94 Score=28.84 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++..++++..+...|...+..++..|..+|++|..+-..
T Consensus 32 ~~~g~Vvl~HG~~Eh~~ry~~la~~l~~~G~~V~~~D~R 70 (298)
T COG2267 32 PPKGVVVLVHGLGEHSGRYEELADDLAARGFDVYALDLR 70 (298)
T ss_pred CCCcEEEEecCchHHHHHHHHHHHHHHhCCCEEEEecCC
Confidence 444888889999999999999999999999999877664
No 431
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=29.85 E-value=70 Score=30.99 Aligned_cols=44 Identities=20% Similarity=0.195 Sum_probs=26.5
Q ss_pred cccccChhHHHHHHhhCCcccccCccc--hhhHHHHHHHhhhccceec
Q 012735 344 FWTHNGWNSTLESICEGIPMICMPCFT--DQKVNARYVSDVWKVGLQL 389 (457)
Q Consensus 344 ~I~hgG~~s~~eal~~gvP~v~~P~~~--DQ~~na~~v~~~lG~g~~l 389 (457)
..|.||.-.+.|-=.+|+|+|.+-... -.-.-|.|+.. ++++--
T Consensus 348 tC~r~~a~m~keiE~~GiPvv~~~~~~pis~tvGanrivp--~~~ip~ 393 (431)
T TIGR01918 348 TCTRCGATMVKEIERAGIPVVHMCTVIPIALTVGANRIVP--TIAIPH 393 (431)
T ss_pred cchhHHHHHHHHHHHcCCCEEEEeecccHhhhcCccceec--ccCcCC
Confidence 456677777777778999998765431 12223556554 444443
No 432
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=29.81 E-value=98 Score=26.87 Aligned_cols=36 Identities=11% Similarity=0.158 Sum_probs=31.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+|.++.-|+-|-..-...||..|+++|++|.++-..
T Consensus 2 ~iav~gKGGvGKTt~~~nLA~~la~~G~rvLliD~D 37 (212)
T cd02117 2 QIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37 (212)
T ss_pred EEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 567777778899999999999999999999888654
No 433
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=29.71 E-value=3.9e+02 Score=27.23 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=33.0
Q ss_pred HHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecchHHHH
Q 012735 89 FRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGGASSF 139 (457)
Q Consensus 89 ~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~~~~~ 139 (457)
....+.++.+. +.++||.|. .+..+|+++|++.|.+.+.-....
T Consensus 134 ~~~~~~~l~~~----G~~~viG~~---~~~~~A~~~gl~~ili~s~esi~~ 177 (526)
T TIGR02329 134 ARSCVNDLRAR----GIGAVVGAG---LITDLAEQAGLHGVFLYSADSVRQ 177 (526)
T ss_pred HHHHHHHHHHC----CCCEEECCh---HHHHHHHHcCCceEEEecHHHHHH
Confidence 34467777765 899999996 357899999999999877543333
No 434
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=29.64 E-value=85 Score=27.25 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSF 44 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~ 44 (457)
.++|+++..|.-| ..-++.|.+.|++||++++..
T Consensus 9 gk~vlVvGgG~va-----~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 9 GRAVLVVGGGDVA-----LRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCEEEEEcCCC
Confidence 4588888766433 677899999999999998863
No 435
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=29.63 E-value=70 Score=30.97 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=0.0
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHH----------HHhHcCCCeEE
Q 012735 76 AFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQA----------VADSLKLPRIV 130 (457)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~----------~A~~l~iP~v~ 130 (457)
.++..-.+.+...+.+.++++ +||++|+.+.+..+.. +.++++||.+.
T Consensus 55 nYf~en~eea~~~i~~mv~k~-------~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt 112 (431)
T TIGR01917 55 SFFGENLEEAKAKVLEMIKGA-------NPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFT 112 (431)
T ss_pred hhhhhCHHHHHHHHHHHHHhc-------CCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEE
No 436
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=29.58 E-value=1.3e+02 Score=28.14 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=24.6
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|..-++++ ++++.++ | .--.+++++|+++|++|.++..
T Consensus 1 m~~~~~k~-vlVTGas-~--gIG~~~a~~L~~~G~~V~~~~r 38 (322)
T PRK07453 1 MSQDAKGT-VIITGAS-S--GVGLYAAKALAKRGWHVIMACR 38 (322)
T ss_pred CCCCCCCE-EEEEcCC-C--hHHHHHHHHHHHCCCEEEEEEC
Confidence 43333444 4444443 2 3457889999999999988764
No 437
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=29.54 E-value=2.4e+02 Score=25.95 Aligned_cols=35 Identities=26% Similarity=0.369 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
.++|+++..|..|. .+|+.|.++||.|.++....+
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~g~~v~i~g~d~~ 37 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEAGLVVRIIGRDRS 37 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHcCCeEEEEeecCc
Confidence 56888888887776 579999999999999887633
No 438
>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated
Probab=29.36 E-value=89 Score=32.66 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++||+++...-.-.+.-|-.....|+++||+|+++.-.
T Consensus 369 ~~rvLv~spHPDDevi~~GGTlarl~~~G~~V~vv~~T 406 (652)
T PRK02122 369 PKRVIIFSPHPDDDVISMGGTFRRLVEQGHDVHVAYQT 406 (652)
T ss_pred CceEEEEEeCCCchHhhhHHHHHHHHHCCCcEEEEEec
Confidence 35555554444467788888889999999999996643
No 439
>PRK05858 hypothetical protein; Provisional
Probab=29.17 E-value=2.2e+02 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=22.3
Q ss_pred CCCCCCcccccCh------hHHHHHHhhCCcccccC
Q 012735 338 HPAVGAFWTHNGW------NSTLESICEGIPMICMP 367 (457)
Q Consensus 338 ~~~~~~~I~hgG~------~s~~eal~~gvP~v~~P 367 (457)
.+.+ ++.|.|- +.+.+|...++|+|++.
T Consensus 67 ~~gv--~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 67 VPGV--AVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred CCeE--EEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3455 8888774 58899999999999985
No 440
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=29.13 E-value=3.1e+02 Score=26.76 Aligned_cols=34 Identities=15% Similarity=0.098 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
||||++..+++-| +||+.|++.+-.-.+++.+.|
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s~~v~~~~~apgN 34 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQSPLVLYVYVAPGN 34 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcCCceeEEEEeCCC
Confidence 6899999999999 689999987755555555433
No 441
>PRK12377 putative replication protein; Provisional
Probab=29.13 E-value=96 Score=27.91 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=30.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..++|...+|.|=..-..++|++|.+.|+.|.+++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP 138 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence 4577888888888888999999999989988777663
No 442
>PRK06921 hypothetical protein; Provisional
Probab=29.13 E-value=1.1e+02 Score=27.79 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHC-CCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQ-GFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~-Gh~Vt~~~~ 42 (457)
...++|+..+|.|=..-..++|++|.++ |+.|.+++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4568888888889888899999999998 999988775
No 443
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=29.08 E-value=87 Score=29.03 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=38.3
Q ss_pred CCCCCCcccccChhHHHHHHh----hCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 338 HPAVGAFWTHNGWNSTLESIC----EGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 338 ~~~~~~~I~hgG~~s~~eal~----~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
.+++ +|+=||-||+++++. .++|++.+... + +| - + ...+++++.++|+++++.
T Consensus 62 ~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~-lG--F-l-~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 62 VCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------R-LG--F-L-TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred CCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c-cc--c-c-ccCCHHHHHHHHHHHHcC
Confidence 4566 999999999999976 36677766542 1 22 1 1 146789999999999876
No 444
>PLN02583 cinnamoyl-CoA reductase
Probab=29.00 E-value=1.2e+02 Score=27.92 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHCCCeEEEEeC
Q 012735 22 PMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 22 p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
--..++++|.++||+|+.++.
T Consensus 18 IG~~lv~~Ll~~G~~V~~~~R 38 (297)
T PLN02583 18 VGFWLVKRLLSRGYTVHAAVQ 38 (297)
T ss_pred HHHHHHHHHHhCCCEEEEEEc
Confidence 356789999999999998764
No 445
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=28.98 E-value=1.7e+02 Score=26.93 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=18.4
Q ss_pred HHHHHHHHHCCCeEEEEeCCCC
Q 012735 24 LQLANILHSQGFTITIIHTSFN 45 (457)
Q Consensus 24 l~la~~L~~~Gh~Vt~~~~~~~ 45 (457)
.++|..++++|++|.+++....
T Consensus 3 ~a~a~~~a~~g~~vllv~~Dp~ 24 (284)
T TIGR00345 3 CATAIRLAEQGKKVLLVSTDPA 24 (284)
T ss_pred HHHHHHHHHCCCeEEEEECCCC
Confidence 4688899999999999998633
No 446
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.93 E-value=84 Score=28.19 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=20.6
Q ss_pred CeeEEEeCCCcch--HH-HHHhHcCCCeEEEecc
Q 012735 104 PIACLISDAMLPF--TQ-AVADSLKLPRIVLRTG 134 (457)
Q Consensus 104 ~pDlvi~D~~~~~--~~-~~A~~l~iP~v~~~~~ 134 (457)
+||+||....... .. .+.+.+|||++.+...
T Consensus 74 ~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 74 KPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 9999998754332 12 2444589999887654
No 447
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=28.59 E-value=2.6e+02 Score=23.81 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=59.4
Q ss_pred cCHHHHHHHHHHHHHC-CCeEEEEeCCCCCCCCCCCCCeeEEecC------------------CCCCCCCCCccCHHHHH
Q 012735 18 GHISPMLQLANILHSQ-GFTITIIHTSFNSPNPSSHPHLTFHFIQ------------------ENLSASEASTDDLVAFV 78 (457)
Q Consensus 18 gH~~p~l~la~~L~~~-Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~------------------~~~~~~~~~~~~~~~~~ 78 (457)
-.+..+-.+++.+.++ |.++.+-.+....... .|.+|+... .|+......+..+..++
T Consensus 39 ~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl---~gADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~ 115 (183)
T PF02056_consen 39 ERLEIVERLARRMVEEAGADLKVEATTDRREAL---EGADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFF 115 (183)
T ss_dssp HHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHH---TTESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHh---CCCCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHH
Confidence 3455667788888764 8888886664222222 244444332 12222113334455555
Q ss_pred HHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCcchHH---HHHhHcC-CCeEEEecchHHH
Q 012735 79 SLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQ---AVADSLK-LPRIVLRTGGASS 138 (457)
Q Consensus 79 ~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~---~~A~~l~-iP~v~~~~~~~~~ 138 (457)
..++. .. .+.+..+++.+. -||+-+.++..+.+. .+.+..+ +++|.++.++...
T Consensus 116 ~alRt-ip-v~~~ia~~i~~~----~PdAw~iNytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~ 173 (183)
T PF02056_consen 116 RALRT-IP-VMLDIARDIEEL----CPDAWLINYTNPMGIVTEALSRYTPKIKVVGLCHGPQGT 173 (183)
T ss_dssp HHHHH-HH-HHHHHHHHHHHH----TTTSEEEE-SSSHHHHHHHHHHHSTTSEEEEE-SHHHHH
T ss_pred HHHhh-HH-HHHHHHHHHHHh----CCCcEEEeccChHHHHHHHHHHhCCCCCEEEECCCHHHH
Confidence 54432 22 233334444333 689999887665443 3555666 9999999886554
No 448
>PRK06111 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=28.58 E-value=4e+02 Score=26.28 Aligned_cols=32 Identities=6% Similarity=0.116 Sum_probs=24.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||+++..+.. .+.+++++.+.|++|.++.+.
T Consensus 3 ~~ililg~g~~-----~~~~~~~a~~lG~~~v~~~~~ 34 (450)
T PRK06111 3 QKVLIANRGEI-----AVRIIRTCQKLGIRTVAIYSE 34 (450)
T ss_pred ceEEEECCcHH-----HHHHHHHHHHcCCeEEEEech
Confidence 47777765543 478888999999999998764
No 449
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.50 E-value=78 Score=28.91 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=36.8
Q ss_pred CCCCCCcccccChhHHHHHHhh-CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 338 HPAVGAFWTHNGWNSTLESICE-GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 338 ~~~~~~~I~hgG~~s~~eal~~-gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
.+++ +|+=||-||++.+++. .+|++.+-.. .+|-.- ..+++++.+++++++++
T Consensus 52 ~~D~--vi~lGGDGT~L~a~~~~~~PilGIN~G--------------~lGFL~--~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADV--IITIGGDGTILRTLQRAKGPILGINMG--------------GLGFLT--EIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCE--EEEEcCcHHHHHHHHHcCCCEEEEECC--------------CCccCc--ccCHHHHHHHHHHHHcC
Confidence 4666 9999999999999884 4566443221 112111 46788999999999886
No 450
>PLN02686 cinnamoyl-CoA reductase
Probab=28.39 E-value=1.2e+02 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+.++|++....+ .--..|++.|+++||+|+.++.
T Consensus 52 ~~k~VLVTGatG----fIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 52 EARLVCVTGGVS----FLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCEEEEECCch----HHHHHHHHHHHHCCCEEEEEeC
Confidence 345555443333 4567789999999999988664
No 451
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=28.31 E-value=5.3e+02 Score=24.59 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCc--cCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQ--GHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~--gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++||.++++++. |=-....++.+.+...|.+|.-+-..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~G 41 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNG 41 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecc
Confidence 578999998765 76677889999999999998877654
No 452
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=28.30 E-value=1.2e+02 Score=26.54 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=25.8
Q ss_pred cEEEEEcCC----CccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLP----LQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~----~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+||+++..+ ......=++.--..|.+.|++|+++++.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~ 42 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPD 42 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCC
Confidence 367666541 1124445666678999999999999985
No 453
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=28.15 E-value=1e+02 Score=28.04 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=31.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.|.+..-||-|-..-.+.||..|+++|++|.++-..
T Consensus 2 ~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD~D 37 (275)
T TIGR01287 2 QIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVGCD 37 (275)
T ss_pred eeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 577777778899999999999999999999998654
No 454
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=28.11 E-value=48 Score=33.23 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|+.+...+|.|+..+..| .++|+.|+++||+|++.-.
T Consensus 1 ~~~~~~~~IG~IGLG~MG-----~~mA~nL~~~G~~V~V~NR 37 (493)
T PLN02350 1 MASAALSRIGLAGLAVMG-----QNLALNIAEKGFPISVYNR 37 (493)
T ss_pred CCCCCCCCEEEEeeHHHH-----HHHHHHHHhCCCeEEEECC
Confidence 566778889999888766 4789999999999999864
No 455
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.99 E-value=1.2e+02 Score=22.02 Aligned_cols=36 Identities=14% Similarity=0.222 Sum_probs=27.7
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 7 RRLVLFPLPLQ--GHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~~~~~--gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
..|+++|.... .+..-...+++.|.+.|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 46788886653 4666788999999999999987543
No 456
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=27.98 E-value=82 Score=30.79 Aligned_cols=32 Identities=25% Similarity=0.400 Sum_probs=24.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||.|+..|..| .++|..|+++||+|+++...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 467787665544 68899999999999988653
No 457
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=27.90 E-value=57 Score=31.50 Aligned_cols=39 Identities=21% Similarity=0.327 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.+--|++++.|..|+-.-+..++.+|+++|+-|..+-+.
T Consensus 98 ~~~PvvIFSHGlgg~R~~yS~~~~eLAS~GyVV~aieHr 136 (379)
T PF03403_consen 98 GKFPVVIFSHGLGGSRTSYSAICGELASHGYVVAAIEHR 136 (379)
T ss_dssp S-EEEEEEE--TT--TTTTHHHHHHHHHTT-EEEEE---
T ss_pred CCCCEEEEeCCCCcchhhHHHHHHHHHhCCeEEEEeccC
Confidence 556799999999999999999999999999998888775
No 458
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=27.88 E-value=1.2e+02 Score=23.88 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.1
Q ss_pred EEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 10 VLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 10 l~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++..+..+.-.-+..+++.|+++|+.|..+..+
T Consensus 2 vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 2 VVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEEECTTTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 4555666667777999999999999999888553
No 459
>PRK09135 pteridine reductase; Provisional
Probab=27.72 E-value=1.5e+02 Score=26.13 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=25.4
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|...+.+++++.... | .--..+++.|.++|++|..+..
T Consensus 1 ~~~~~~~~vlItGa~--g--~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 1 MMTDSAKVALITGGA--R--RIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCCCCEEEEeCCC--c--hHHHHHHHHHHHCCCEEEEEcC
Confidence 333344556655533 3 4456788999999999988775
No 460
>PRK10749 lysophospholipase L2; Provisional
Probab=27.65 E-value=1.2e+02 Score=28.50 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=29.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++++..|..+|...+..++..|.++|++|..+-..
T Consensus 55 ~~vll~HG~~~~~~~y~~~~~~l~~~g~~v~~~D~~ 90 (330)
T PRK10749 55 RVVVICPGRIESYVKYAELAYDLFHLGYDVLIIDHR 90 (330)
T ss_pred cEEEEECCccchHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 456666677799999999999999999998666554
No 461
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.57 E-value=1.4e+02 Score=28.71 Aligned_cols=83 Identities=19% Similarity=0.190 Sum_probs=0.0
Q ss_pred cccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhH------------HHhhcCCCccc--cccChHh-
Q 012735 270 GSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGF------------MEMVDGRGHLV--KWAPQQE- 334 (457)
Q Consensus 270 Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~------------~~~~~~~~~~~--~~vpq~~- 334 (457)
.|...-+..-+..+++++++.+..+.+-+..+. ....+ .....+++.+. .|+||.+
T Consensus 187 vslF~Ye~~~l~~ll~~~~~~~~pv~llvp~g~---------~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~y 257 (374)
T PF10093_consen 187 VSLFCYENAALASLLDAWAASPKPVHLLVPEGR---------ALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDY 257 (374)
T ss_pred EEEEeCCchHHHHHHHHHhcCCCCeEEEecCCc---------cHHHHHHHhccccccCccccccCCeEEEECCCCCHHHH
Q ss_pred --hhcCCCCCCcccccChhHHHHHHhhCCccc
Q 012735 335 --VLAHPAVGAFWTHNGWNSTLESICEGIPMI 364 (457)
Q Consensus 335 --lL~~~~~~~~I~hgG~~s~~eal~~gvP~v 364 (457)
||-.+| +-.==|--|..-|..+|+|+|
T Consensus 258 D~LLw~cD---~NfVRGEDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 258 DRLLWACD---FNFVRGEDSFVRAQWAGKPFV 286 (374)
T ss_pred HHHHHhCc---cceEecchHHHHHHHhCCCce
No 462
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=27.45 E-value=3.5e+02 Score=24.87 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.5
Q ss_pred HHHHHHHHHCCCeEEEEeCC
Q 012735 24 LQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 24 l~la~~L~~~Gh~Vt~~~~~ 43 (457)
-+|..+|.+.||+|++++-.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 46788999999999999975
No 463
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=27.39 E-value=1.1e+02 Score=27.91 Aligned_cols=37 Identities=11% Similarity=0.166 Sum_probs=31.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.|.|+.-||-|-..-.+.||-.|+++|++|.++-..
T Consensus 2 ~~iav~~KGGVGKTT~~~nLA~~La~~G~rVLlID~D 38 (274)
T PRK13235 2 RKVAIYGKGGIGKSTTTQNTVAGLAEMGKKVMVVGCD 38 (274)
T ss_pred CEEEEeCCCCccHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3567776677799999999999999999999998654
No 464
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=27.32 E-value=1.2e+02 Score=28.44 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=24.8
Q ss_pred CCCCCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 1 MDQRKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 1 ~~~~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|+....++|++....+ +-..-|.+.|..|||.|.=.+-.
T Consensus 1 m~~~~~~~VcVTGAsG----fIgswivk~LL~rGY~V~gtVR~ 39 (327)
T KOG1502|consen 1 MDQDEGKKVCVTGASG----FIGSWIVKLLLSRGYTVRGTVRD 39 (327)
T ss_pred CCCCCCcEEEEeCCch----HHHHHHHHHHHhCCCEEEEEEcC
Confidence 4443344444443333 34566899999999998876654
No 465
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=27.27 E-value=85 Score=27.11 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEE
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITII 40 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~ 40 (457)
.++|++...+. --..+|+.|.+.||+|++.
T Consensus 28 gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 28 GKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 46788887763 4467899999999999954
No 466
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=27.27 E-value=1.3e+02 Score=26.22 Aligned_cols=31 Identities=19% Similarity=0.030 Sum_probs=22.7
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 7 RRLVLFP-LPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 7 ~~il~~~-~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
|||.|+. .+. --..+|+.|++.||+|++...
T Consensus 1 MkI~IIGG~G~-----mG~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGD-----QGKGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCH-----HHHHHHHHHHhCCCEEEEEEc
Confidence 4677774 333 335789999999999998754
No 467
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.24 E-value=1.5e+02 Score=27.31 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=20.7
Q ss_pred CCCCCcccccChhHHHHHHhh-----CCccc-ccCc
Q 012735 339 PAVGAFWTHNGWNSTLESICE-----GIPMI-CMPC 368 (457)
Q Consensus 339 ~~~~~~I~hgG~~s~~eal~~-----gvP~v-~~P~ 368 (457)
+++ +|.-||=||+.|++.. ..|.+ ++|.
T Consensus 58 ~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 58 VDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 455 9999999999997653 34444 4886
No 468
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=27.23 E-value=1.9e+02 Score=29.16 Aligned_cols=144 Identities=10% Similarity=0.115 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCC-------------C
Q 012735 275 VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPA-------------V 341 (457)
Q Consensus 275 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~-------------~ 341 (457)
++.+-+..+++.++.-+..|+.++.... ...+|..+..|+.. +-.+-++...|..|=+ .
T Consensus 131 LS~~afNALLKTLEEPP~hV~FIlATTe------~~Kip~TIlSRcq~--f~fkri~~~~I~~~L~~i~~~E~I~~e~~a 202 (515)
T COG2812 131 LSKQAFNALLKTLEEPPSHVKFILATTE------PQKIPNTILSRCQR--FDFKRLDLEEIAKHLAAILDKEGINIEEDA 202 (515)
T ss_pred hhHHHHHHHhcccccCccCeEEEEecCC------cCcCchhhhhcccc--ccccCCCHHHHHHHHHHHHHhcCCccCHHH
Confidence 5556666677777776666666655432 34466655444421 1113333333221111 1
Q ss_pred CCcccccChhHHHHHHhhCCcccccCccchhhHHHHH--HHhhhccceecCC--CCCHHHHHHHHHHHhcccchHHHHHH
Q 012735 342 GAFWTHNGWNSTLESICEGIPMICMPCFTDQKVNARY--VSDVWKVGLQLEN--GLKREEIEKTIRRVMVEKQGEEIRSR 417 (457)
Q Consensus 342 ~~~I~hgG~~s~~eal~~gvP~v~~P~~~DQ~~na~~--v~~~lG~g~~l~~--~~~~~~l~~ai~~il~~~~~~~~~~~ 417 (457)
-.+|-+-+-||+-+++. ..||..+-.- +.. -.+.+. ..+.+.+...+..++.. +.++.
T Consensus 203 L~~ia~~a~Gs~RDals----------lLDq~i~~~~~~It~----~~v~~~lG~~~~~~~~~~~~~i~~~----d~~~~ 264 (515)
T COG2812 203 LSLIARAAEGSLRDALS----------LLDQAIAFGEGEITL----ESVRDMLGLTDIEKLLSLLEAILKG----DAKEA 264 (515)
T ss_pred HHHHHHHcCCChhhHHH----------HHHHHHHccCCcccH----HHHHHHhCCCCHHHHHHHHHHHHcc----CHHHH
Confidence 11555666667766665 4566554421 111 001111 35777788888777765 66777
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012735 418 IFRLKEKANHSWKQGRSSFESINSLVTHILS 448 (457)
Q Consensus 418 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (457)
...+.+.+. .|......+++++++++.
T Consensus 265 ~~~~~~l~~----~G~~~~~~l~dl~~~~~~ 291 (515)
T COG2812 265 LRLINELIE----EGKDPEAFLEDLLNFLRD 291 (515)
T ss_pred HHHHHHHHH----hCcCHHHHHHHHHHHHHH
Confidence 777777776 677889999999888865
No 469
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=27.23 E-value=69 Score=31.83 Aligned_cols=35 Identities=23% Similarity=0.485 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 4 RKGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 4 ~~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++++|+++..+..| +..|..|.++||+|+++-..
T Consensus 138 ~~~~~VvIIGgGpaG-----l~aA~~l~~~g~~V~lie~~ 172 (457)
T PRK11749 138 KTGKKVAVIGAGPAG-----LTAAHRLARKGYDVTIFEAR 172 (457)
T ss_pred cCCCcEEEECCCHHH-----HHHHHHHHhCCCeEEEEccC
Confidence 456789888876444 68899999999999998653
No 470
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=27.22 E-value=91 Score=24.86 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCC-eEEEEeC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGF-TITIIHT 42 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh-~Vt~~~~ 42 (457)
.+..++.++....+|..-+-.++++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4567888888888999999999999999987 5666665
No 471
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=27.22 E-value=48 Score=32.91 Aligned_cols=111 Identities=15% Similarity=0.146 Sum_probs=56.8
Q ss_pred CccCHHHHHHHHHHHHH--------CCCe----EEEEeCC-CCCC------CC---CCCCCeeEEecCCCCC----CCCC
Q 012735 16 LQGHISPMLQLANILHS--------QGFT----ITIIHTS-FNSP------NP---SSHPHLTFHFIQENLS----ASEA 69 (457)
Q Consensus 16 ~~gH~~p~l~la~~L~~--------~Gh~----Vt~~~~~-~~~~------~~---~~~~g~~~~~i~~~~~----~~~~ 69 (457)
+.|.+.=.+.+|++|.+ .|-+ |.++|.- .+.. .. ....+...+.+|-+-. ...-
T Consensus 295 TGGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwi 374 (550)
T PF00862_consen 295 TGGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWI 374 (550)
T ss_dssp SSHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S--
T ss_pred CCCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhcc
Confidence 34667778888888864 3554 5555532 1110 11 1113566666663322 1233
Q ss_pred CccCHHHHHHHHHHhcchhHHHHHHHHhhccCCCCeeEEEeCCCc--chHHHHHhHcCCCeEEEecc
Q 012735 70 STDDLVAFVSLLNTKCLVPFRDCLAKLLADVEEEPIACLISDAML--PFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~--~~~~~~A~~l~iP~v~~~~~ 134 (457)
...+.+.++..+...... .+..++ .. +||+|+..... ..|.++++++|||...+..+
T Consensus 375 srf~lWPyLe~fa~d~~~---~i~~e~----~~-~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 375 SRFDLWPYLEEFADDAER---EILAEL----QG-KPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp -GGG-GGGHHHHHHHHHH---HHHHHH----TS---SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred chhhchhhHHHHHHHHHH---HHHHHh----CC-CCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 445566666665544222 122222 22 89999988543 67888999999999988766
No 472
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=27.20 E-value=1e+02 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=21.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||.++. .||+ -+.+|-.|++.||+|+.+-..
T Consensus 1 M~I~ViG---lGyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIG---LGYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEEC---CCcc--hHHHHHHHHhCCCEEEEEeCC
Confidence 5666663 3444 478899999999999998764
No 473
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=27.16 E-value=58 Score=27.44 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=55.5
Q ss_pred cCHHHHHHHHHHH-HHCCCeEEEEeCCCCCCCCCCCCCeeEEecCCCC----------CC-CC--------CCccCHHHH
Q 012735 18 GHISPMLQLANIL-HSQGFTITIIHTSFNSPNPSSHPHLTFHFIQENL----------SA-SE--------ASTDDLVAF 77 (457)
Q Consensus 18 gH~~p~l~la~~L-~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~~~----------~~-~~--------~~~~~~~~~ 77 (457)
+.+.-.+..|+.| .+.|.+|.+.-.. ......+..++..+.++... .. .. ....+...
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~- 94 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLES- 94 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHH-
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHH-
Confidence 5667788999999 7889999887653 32222221244444444100 00 00 11112222
Q ss_pred HHHHHHh--------cchhHHHHHHHHhhccCCCCeeEEEeCCCcchHHHHHhHcCCCeEEEecch
Q 012735 78 VSLLNTK--------CLVPFRDCLAKLLADVEEEPIACLISDAMLPFTQAVADSLKLPRIVLRTGG 135 (457)
Q Consensus 78 ~~~~~~~--------~~~~~~~~l~~l~~~~~~~~pDlvi~D~~~~~~~~~A~~l~iP~v~~~~~~ 135 (457)
+..+... -...+...+.++.+. +.|+||.+.. +..+|+.+|+|++.+.++.
T Consensus 95 ~~~ll~~~i~~~~~~~~~e~~~~i~~~~~~----G~~viVGg~~---~~~~A~~~gl~~v~i~sg~ 153 (176)
T PF06506_consen 95 IEELLGVDIKIYPYDSEEEIEAAIKQAKAE----GVDVIVGGGV---VCRLARKLGLPGVLIESGE 153 (176)
T ss_dssp HHHHHT-EEEEEEESSHHHHHHHHHHHHHT----T--EEEESHH---HHHHHHHTTSEEEESS--H
T ss_pred HHHHhCCceEEEEECCHHHHHHHHHHHHHc----CCcEEECCHH---HHHHHHHcCCcEEEEEecH
Confidence 2222211 123344566666665 8999999963 5789999999999987643
No 474
>PRK07952 DNA replication protein DnaC; Validated
Probab=27.13 E-value=1.2e+02 Score=27.31 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=29.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
-+++...+|.|=..-..++|+.|.++|+.|.+++.
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~ 135 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV 135 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence 46777778889999999999999999999988754
No 475
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=27.07 E-value=85 Score=25.40 Aligned_cols=31 Identities=19% Similarity=0.387 Sum_probs=26.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHHC-CCeEEE
Q 012735 9 LVLFPLPLQGHISPMLQLANILHSQ-GFTITI 39 (457)
Q Consensus 9 il~~~~~~~gH~~p~l~la~~L~~~-Gh~Vt~ 39 (457)
++..+.-+..|..-.++||..|.+. |.+|.+
T Consensus 4 fI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 4 FISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 4556666779999999999999999 999986
No 476
>PRK13054 lipid kinase; Reviewed
Probab=27.06 E-value=1.8e+02 Score=26.87 Aligned_cols=81 Identities=12% Similarity=-0.049 Sum_probs=0.0
Q ss_pred CcEEEEEecccccCCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCC
Q 012735 262 KSVIYVSFGSIAAVSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAV 341 (457)
Q Consensus 262 ~~vv~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~ 341 (457)
+.+.+|--|... ....+..++..+...+..+.+...... -...-+=+..+....++
T Consensus 4 ~~~~~i~N~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~~----------------------~~a~~~a~~~~~~~~d~ 59 (300)
T PRK13054 4 PKSLLILNGKSA--GNEELREAVGLLREEGHTLHVRVTWEK----------------------GDAARYVEEALALGVAT 59 (300)
T ss_pred ceEEEEECCCcc--chHHHHHHHHHHHHcCCEEEEEEecCC----------------------CcHHHHHHHHHHcCCCE
Q ss_pred CCcccccChhHHHHHHhh--------CCcccccCc
Q 012735 342 GAFWTHNGWNSTLESICE--------GIPMICMPC 368 (457)
Q Consensus 342 ~~~I~hgG~~s~~eal~~--------gvP~v~~P~ 368 (457)
+|..||=||+.|++.. .+|+-++|.
T Consensus 60 --vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 60 --VIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred --EEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
No 477
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=27.06 E-value=1.2e+02 Score=29.42 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.6
Q ss_pred CCcEEEEEc--CCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFP--LPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~--~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++++|+.+. -||-|-..-.+.||..|+.+|+.|.++-..
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344554443 456699999999999999999999998765
No 478
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=27.05 E-value=80 Score=31.60 Aligned_cols=55 Identities=9% Similarity=0.109 Sum_probs=32.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecCC--CCCCCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQE--NLSASE 68 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~~--~~~~~~ 68 (457)
+++++...- -.-.+.+|+.|.+.|+++. .|.. -...... .|+.+..+.+ ++|+-.
T Consensus 5 ~~aLISVsD----K~~iv~lAk~L~~lGfeI~-AT~G-Tak~L~e-~GI~v~~V~k~TgfpEil 61 (513)
T PRK00881 5 KRALISVSD----KTGIVEFAKALVELGVEIL-STGG-TAKLLAE-AGIPVTEVSDVTGFPEIL 61 (513)
T ss_pred CEEEEEEeC----cccHHHHHHHHHHCCCEEE-Ecch-HHHHHHH-CCCeeEEeecccCCchhc
Confidence 344444443 3447899999999999983 4432 2222222 5677766653 555533
No 479
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=26.92 E-value=4.1e+02 Score=23.95 Aligned_cols=33 Identities=21% Similarity=0.150 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
.++|+++..- .=..+|++.|...++.+++.+..
T Consensus 2 ~~~ilvlGGT-----~Dar~la~~L~~~~~~~~~ss~t 34 (257)
T COG2099 2 MMRILLLGGT-----SDARALAKKLAAAPVDIILSSLT 34 (257)
T ss_pred CceEEEEecc-----HHHHHHHHHhhccCccEEEEEcc
Confidence 3456555332 23578999999999888877764
No 480
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=26.82 E-value=3.9e+02 Score=22.95 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=37.5
Q ss_pred HhhCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 357 ICEGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 357 l~~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
.....|+|.+--++|=+.--+.+.+ |+---+.+.++.+.|.++|.+.+..
T Consensus 73 ~~~~~PVIfiTGhgDIpmaV~AmK~--GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 73 RGIRLPVIFLTGHGDIPMAVQAMKA--GAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHc--chhhHHhCCCchHHHHHHHHHHHHH
Confidence 3456788888888887766655554 7666666688999999999999876
No 481
>PLN02214 cinnamoyl-CoA reductase
Probab=26.82 E-value=1.4e+02 Score=28.20 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.++|++.... | .--..|+++|.++||+|+.++..
T Consensus 9 ~~~~vlVTGat--G--fIG~~l~~~L~~~G~~V~~~~r~ 43 (342)
T PLN02214 9 AGKTVCVTGAG--G--YIASWIVKILLERGYTVKGTVRN 43 (342)
T ss_pred CCCEEEEECCC--c--HHHHHHHHHHHHCcCEEEEEeCC
Confidence 34566554432 3 34567889999999999987753
No 482
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=26.78 E-value=98 Score=28.03 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=24.1
Q ss_pred CeeEEEeCC-----Cc-chHHHHHhHcCCCeEEEecc
Q 012735 104 PIACLISDA-----ML-PFTQAVADSLKLPRIVLRTG 134 (457)
Q Consensus 104 ~pDlvi~D~-----~~-~~~~~~A~~l~iP~v~~~~~ 134 (457)
++|+|++.- .+ --+..+|+.||+|++.+..-
T Consensus 111 ~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~~ 147 (260)
T COG2086 111 GPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVSK 147 (260)
T ss_pred CCCEEEEecccccCCccchHHHHHHHhCCceeeeEEE
Confidence 899998543 33 45788999999999997554
No 483
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=26.66 E-value=1.5e+02 Score=21.98 Aligned_cols=39 Identities=10% Similarity=0.079 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+++||++++..|.|=-.-.-.+=+.+.++|.++.+-...
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~ 40 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGS 40 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEec
Confidence 456888888776652233455566666778887765553
No 484
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=26.62 E-value=94 Score=28.22 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=24.2
Q ss_pred cEEEEEecccccCC-HHHHHHHHHHHhhC--CCCeEEEECCC
Q 012735 263 SVIYVSFGSIAAVS-EAEFLEIAWGLANC--KLPFLWVVRPG 301 (457)
Q Consensus 263 ~vv~vs~Gs~~~~~-~~~~~~~~~al~~~--~~~~i~~~~~~ 301 (457)
.++++||||..... ..-+..+.+.++.. +..+-|++...
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~ 43 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTSR 43 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-H
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHH
Confidence 58999999988744 44677777777664 67788888643
No 485
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=26.54 E-value=1.4e+02 Score=29.48 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=34.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
++..|+++..++.|-..-...||..|.+.|+.|.+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 355688888889999999999999999999999999875
No 486
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.50 E-value=1.3e+02 Score=26.93 Aligned_cols=34 Identities=12% Similarity=0.016 Sum_probs=25.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEe
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIH 41 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~ 41 (457)
.|+++++.++.|. ---.++|++|+++|++|.+..
T Consensus 8 ~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANNM-SISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEe
Confidence 4677888777531 145688999999999988764
No 487
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=26.49 E-value=1.4e+02 Score=24.86 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=28.3
Q ss_pred CCccCHHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCCCCCeeEEecC
Q 012735 15 PLQGHISPMLQLANILHSQGFTITIIHTSFNSPNPSSHPHLTFHFIQ 61 (457)
Q Consensus 15 ~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~~~~~~~~~~~g~~~~~i~ 61 (457)
|+.|++ -..|+++|.++||+|+.++........ ..+++++...
T Consensus 5 GatG~v--G~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d 47 (183)
T PF13460_consen 5 GATGFV--GRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGD 47 (183)
T ss_dssp TTTSHH--HHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESC
T ss_pred CCCChH--HHHHHHHHHHCCCEEEEEecCchhccc--ccccccceee
Confidence 344443 456999999999999999975221111 3577776644
No 488
>PRK03094 hypothetical protein; Provisional
Probab=26.31 E-value=64 Score=23.11 Aligned_cols=20 Identities=10% Similarity=0.466 Sum_probs=16.3
Q ss_pred HHHHHHHHHHCCCeEEEEeC
Q 012735 23 MLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 23 ~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+..|.+.|.++||+|.=+-.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999976654
No 489
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=26.24 E-value=1e+02 Score=30.16 Aligned_cols=38 Identities=11% Similarity=0.207 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCc--cC-HHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 6 GRRLVLFPLPLQ--GH-ISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 6 ~~~il~~~~~~~--gH-~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
..||+++|.-+. .+ .+..-+|++.|.++|.+|.|..++
T Consensus 306 A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHP 346 (462)
T PRK09444 306 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHP 346 (462)
T ss_pred CCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 468888885433 22 356889999999999999999986
No 490
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=26.21 E-value=1.3e+02 Score=26.52 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=26.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCe
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFT 36 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~ 36 (457)
-|+|...|..|-......|.+.|+++||.
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K 31 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTK 31 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhccc
Confidence 47888899999999999999999999986
No 491
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=26.21 E-value=83 Score=29.47 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=24.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 7 RRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 7 ~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
|||+|+..+.++ ++..++|.++||+|..+.+.
T Consensus 1 mkIvf~Gs~~~a-----~~~L~~L~~~~~~i~~Vvt~ 32 (313)
T TIGR00460 1 LRIVFFGTPTFS-----LPVLEELREDNFEVVGVVTQ 32 (313)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCcEEEEEcC
Confidence 588888766543 77788999999999876664
No 492
>PRK08462 biotin carboxylase; Validated
Probab=26.20 E-value=6.4e+02 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.113 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+.+|||+.-.+.. .+++++++++.|++|..+.+.
T Consensus 3 ~~k~ili~~~g~~-----~~~~~~~~~~~G~~~v~~~~~ 36 (445)
T PRK08462 3 EIKRILIANRGEI-----ALRAIRTIQEMGKEAIAIYST 36 (445)
T ss_pred CCCEEEEECCcHH-----HHHHHHHHHHcCCCEEEEech
Confidence 4568888765542 678999999999998877654
No 493
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.20 E-value=93 Score=28.13 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=35.4
Q ss_pred CCCCCcccccChhHHHHHHh-hCCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 339 PAVGAFWTHNGWNSTLESIC-EGIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 339 ~~~~~~I~hgG~~s~~eal~-~gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
+++ +|+=||-||++.|++ .++|++.+-.. .+|-.. ..+++++.+++.++++.
T Consensus 42 ~d~--vi~iGGDGT~L~a~~~~~~Pilgin~G--------------~lGfl~--~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 42 ADL--IIVVGGDGTVLKAAKKVGTPLVGFKAG--------------RLGFLS--SYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCE--EEEECCcHHHHHHHHHcCCCEEEEeCC--------------CCcccc--ccCHHHHHHHHHHHHcC
Confidence 455 999999999999987 46666444311 011111 46778888888888876
No 494
>PRK06194 hypothetical protein; Provisional
Probab=26.17 E-value=1.6e+02 Score=26.80 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHCCCeEEEEeC
Q 012735 22 PMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 22 p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
--..++++|+++|++|+++..
T Consensus 18 IG~~la~~l~~~G~~V~~~~r 38 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADV 38 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeC
Confidence 356789999999999988764
No 495
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=26.15 E-value=1e+02 Score=27.73 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=46.5
Q ss_pred EEEeccccc---CCHHHHHHHHHHHhhCCCCeEEEECCCCCCCCCCCCCCchhHHHhhcCCCccccccChHhhhcCCCCC
Q 012735 266 YVSFGSIAA---VSEAEFLEIAWGLANCKLPFLWVVRPGLTRGSDCLEPLPSGFMEMVDGRGHLVKWAPQQEVLAHPAVG 342 (457)
Q Consensus 266 ~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~vpq~~lL~~~~~~ 342 (457)
.++-|+... .-..-..-+.+-|...|..+-+...-+. ....+.+.+ ...+.++++
T Consensus 6 iI~vG~ElL~G~ivdtNa~~la~~L~~~G~~v~~~~~VgD-----~~~~I~~~l----------------~~a~~r~D~- 63 (255)
T COG1058 6 IIAVGDELLSGRIVDTNAAFLADELTELGVDLARITTVGD-----NPDRIVEAL----------------REASERADV- 63 (255)
T ss_pred EEEEccceecCceecchHHHHHHHHHhcCceEEEEEecCC-----CHHHHHHHH----------------HHHHhCCCE-
Confidence 445555544 1122334466667777887766554221 011122222 345566777
Q ss_pred CcccccChh-----HHHHHH--hhCCcccccCccc
Q 012735 343 AFWTHNGWN-----STLESI--CEGIPMICMPCFT 370 (457)
Q Consensus 343 ~~I~hgG~~-----s~~eal--~~gvP~v~~P~~~ 370 (457)
+|+-||.| -+.|++ +.|+|.+.-|-..
T Consensus 64 -vI~tGGLGPT~DDiT~e~vAka~g~~lv~~~~al 97 (255)
T COG1058 64 -VITTGGLGPTHDDLTAEAVAKALGRPLVLDEEAL 97 (255)
T ss_pred -EEECCCcCCCccHhHHHHHHHHhCCCcccCHHHH
Confidence 99999998 445554 4899998877643
No 496
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=26.14 E-value=1.3e+02 Score=24.22 Aligned_cols=36 Identities=17% Similarity=0.324 Sum_probs=28.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeCC
Q 012735 8 RLVLFPLPLQGHISPMLQLANILHSQGFTITIIHTS 43 (457)
Q Consensus 8 ~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~~ 43 (457)
+|.++.+...|=..-+-.|++.|.++|+.|.++-..
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~ 37 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHT 37 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEc
Confidence 577888888899999999999999999999966653
No 497
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=26.14 E-value=91 Score=31.14 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=37.7
Q ss_pred cCCCCCCcccccChhHHHHHHhh----CCcccccCccchhhHHHHHHHhhhccceecCCCCCHHHHHHHHHHHhcc
Q 012735 337 AHPAVGAFWTHNGWNSTLESICE----GIPMICMPCFTDQKVNARYVSDVWKVGLQLENGLKREEIEKTIRRVMVE 408 (457)
Q Consensus 337 ~~~~~~~~I~hgG~~s~~eal~~----gvP~v~~P~~~DQ~~na~~v~~~lG~g~~l~~~~~~~~l~~ai~~il~~ 408 (457)
..+++ +|+=||-||++.|++. ++|++.+-. -+ +|- + ..++++++.++|.++++.
T Consensus 261 ~~~Dl--VIsiGGDGTlL~Aar~~~~~~iPILGIN~-----------G~---LGF-L-t~i~~~e~~~~Le~il~G 318 (508)
T PLN02935 261 TKVDL--VITLGGDGTVLWAASMFKGPVPPVVPFSM-----------GS---LGF-M-TPFHSEQYRDCLDAILKG 318 (508)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEeC-----------CC---cce-e-cccCHHHHHHHHHHHHcC
Confidence 34566 9999999999999874 456654421 11 222 1 146889999999999876
No 498
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=26.05 E-value=1.2e+02 Score=26.28 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=25.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 6 GRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 6 ~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+...+++-...+|-..-+..+|+.|+++|+.|.+.-.
T Consensus 13 ~~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~pD~ 49 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLAPDL 49 (218)
T ss_dssp SEEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEEE-C
T ss_pred CCCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEeccc
Confidence 4556666667778777888999999999977766443
No 499
>PRK09213 pur operon repressor; Provisional
Probab=26.01 E-value=1.3e+02 Score=27.43 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=24.0
Q ss_pred CeeEEEeCCC--cchHHHHHhHcCCCeEEEec
Q 012735 104 PIACLISDAM--LPFTQAVADSLKLPRIVLRT 133 (457)
Q Consensus 104 ~pDlvi~D~~--~~~~~~~A~~l~iP~v~~~~ 133 (457)
++|+|++=.. .+.+..+|..+|+|++++--
T Consensus 130 ~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 130 KIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 7899986543 37788899999999998743
No 500
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=25.98 E-value=1.4e+02 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.118 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHHCCCeEEEEeC
Q 012735 5 KGRRLVLFPLPLQGHISPMLQLANILHSQGFTITIIHT 42 (457)
Q Consensus 5 ~~~~il~~~~~~~gH~~p~l~la~~L~~~Gh~Vt~~~~ 42 (457)
+.|||++....+ .--..|++.|.++||+|+.+..
T Consensus 119 ~~mkILVTGatG----FIGs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 119 KRLRIVVTGGAG----FVGSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred CCCEEEEECCcc----HHHHHHHHHHHHCCCEEEEEeC
Confidence 457888776555 2334688999999999998765
Done!