Query 012736
Match_columns 457
No_of_seqs 498 out of 3036
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:46:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012736.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012736hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01802 AN1_N ubiquitin-like d 99.8 1.2E-20 2.6E-25 151.6 11.5 96 361-456 8-103 (103)
2 KOG0003 Ubiquitin/60s ribosoma 99.8 1.2E-21 2.7E-26 149.8 0.9 76 1-76 1-76 (128)
3 cd01802 AN1_N ubiquitin-like d 99.8 8.2E-20 1.8E-24 146.7 9.6 99 54-152 5-103 (103)
4 cd01793 Fubi Fubi ubiquitin-li 99.8 1.4E-19 3.1E-24 137.5 8.8 74 381-456 1-74 (74)
5 PTZ00044 ubiquitin; Provisiona 99.8 1.2E-18 2.6E-23 133.4 8.9 76 381-456 1-76 (76)
6 cd01810 ISG15_repeat2 ISG15 ub 99.8 1.6E-18 3.5E-23 131.7 8.7 74 383-456 1-74 (74)
7 KOG0004 Ubiquitin/40S ribosoma 99.8 2.4E-19 5.1E-24 148.6 4.4 76 1-76 1-76 (156)
8 cd01807 GDX_N ubiquitin-like d 99.8 1.3E-18 2.8E-23 132.3 7.6 73 1-73 1-73 (74)
9 cd01793 Fubi Fubi ubiquitin-li 99.8 1.6E-18 3.4E-23 131.7 7.9 74 1-76 1-74 (74)
10 cd01803 Ubiquitin Ubiquitin. U 99.7 6.8E-18 1.5E-22 129.3 8.9 76 381-456 1-76 (76)
11 cd01807 GDX_N ubiquitin-like d 99.7 6.5E-18 1.4E-22 128.3 8.4 73 381-453 1-73 (74)
12 PTZ00044 ubiquitin; Provisiona 99.7 5.7E-18 1.2E-22 129.6 8.1 75 1-75 1-75 (76)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 1.4E-17 3.1E-22 127.5 9.3 76 381-456 1-76 (76)
14 cd01797 NIRF_N amino-terminal 99.7 7.3E-18 1.6E-22 128.7 7.5 74 1-74 1-76 (78)
15 cd01804 midnolin_N Ubiquitin-l 99.7 2.9E-17 6.2E-22 125.7 8.8 77 380-457 1-77 (78)
16 cd01810 ISG15_repeat2 ISG15 ub 99.7 2.6E-17 5.6E-22 125.0 7.3 73 3-75 1-73 (74)
17 cd01797 NIRF_N amino-terminal 99.7 5E-17 1.1E-21 124.1 8.2 74 381-454 1-76 (78)
18 cd01798 parkin_N amino-termina 99.7 1.2E-16 2.6E-21 120.0 7.8 70 383-452 1-70 (70)
19 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.6E-16 3.5E-21 119.3 8.4 72 380-451 1-72 (73)
20 KOG0003 Ubiquitin/60s ribosoma 99.7 5.5E-18 1.2E-22 129.8 -0.0 76 381-456 1-76 (128)
21 cd01806 Nedd8 Nebb8-like ubiq 99.7 2E-16 4.4E-21 121.1 8.3 75 1-75 1-75 (76)
22 cd01803 Ubiquitin Ubiquitin. U 99.7 2E-16 4.4E-21 121.1 8.1 76 1-76 1-76 (76)
23 cd01798 parkin_N amino-termina 99.7 1.9E-16 4.2E-21 118.9 6.5 70 3-72 1-70 (70)
24 KOG0004 Ubiquitin/40S ribosoma 99.7 7.7E-17 1.7E-21 133.7 4.6 77 381-457 1-77 (156)
25 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 2.5E-16 5.4E-21 118.3 6.8 70 1-70 2-71 (73)
26 KOG0005 Ubiquitin-like protein 99.6 1.1E-16 2.4E-21 109.0 4.0 70 1-70 1-70 (70)
27 cd01763 Sumo Small ubiquitin-r 99.6 1.1E-15 2.5E-20 119.5 10.0 79 378-456 9-87 (87)
28 cd01794 DC_UbP_C dendritic cel 99.6 5.8E-16 1.3E-20 115.6 7.7 68 384-451 2-69 (70)
29 cd01805 RAD23_N Ubiquitin-like 99.6 1E-15 2.2E-20 117.5 9.1 73 381-453 1-75 (77)
30 cd01794 DC_UbP_C dendritic cel 99.6 4.2E-16 9.2E-21 116.3 6.6 67 5-71 3-69 (70)
31 cd01800 SF3a120_C Ubiquitin-li 99.6 7.6E-16 1.7E-20 117.4 7.6 69 388-456 5-73 (76)
32 cd01804 midnolin_N Ubiquitin-l 99.6 6.4E-16 1.4E-20 118.3 7.0 75 1-76 2-76 (78)
33 KOG0005 Ubiquitin-like protein 99.6 2.6E-16 5.6E-21 107.2 3.5 70 77-146 1-70 (70)
34 cd01809 Scythe_N Ubiquitin-lik 99.6 1.7E-15 3.6E-20 114.7 8.3 72 381-452 1-72 (72)
35 cd01805 RAD23_N Ubiquitin-like 99.6 1.5E-15 3.2E-20 116.5 8.1 73 1-73 1-75 (77)
36 cd01809 Scythe_N Ubiquitin-lik 99.6 1.7E-15 3.6E-20 114.6 7.4 72 1-72 1-72 (72)
37 PF00240 ubiquitin: Ubiquitin 99.6 2E-15 4.4E-20 113.2 7.7 69 386-454 1-69 (69)
38 cd01808 hPLIC_N Ubiquitin-like 99.6 2.6E-15 5.5E-20 113.1 8.0 71 381-452 1-71 (71)
39 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.2E-15 4.7E-20 116.2 7.5 73 380-452 2-76 (80)
40 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.9E-15 6.2E-20 115.5 6.3 72 1-72 3-76 (80)
41 cd01796 DDI1_N DNA damage indu 99.6 5.6E-15 1.2E-19 110.9 7.5 68 383-450 1-70 (71)
42 cd01808 hPLIC_N Ubiquitin-like 99.6 5.1E-15 1.1E-19 111.4 7.2 71 1-72 1-71 (71)
43 cd01796 DDI1_N DNA damage indu 99.5 1.4E-14 2.9E-19 108.9 6.1 68 3-70 1-70 (71)
44 PF00240 ubiquitin: Ubiquitin 99.5 2.7E-14 5.9E-19 107.0 7.2 69 6-74 1-69 (69)
45 cd01800 SF3a120_C Ubiquitin-li 99.5 2.6E-14 5.7E-19 109.0 6.6 69 8-76 5-73 (76)
46 cd01790 Herp_N Homocysteine-re 99.5 4E-14 8.6E-19 106.7 7.4 72 380-451 1-78 (79)
47 cd01763 Sumo Small ubiquitin-r 99.5 7.7E-14 1.7E-18 109.1 8.4 76 1-76 12-87 (87)
48 cd01790 Herp_N Homocysteine-re 99.5 3.9E-14 8.4E-19 106.8 6.3 71 1-71 2-78 (79)
49 cd01812 BAG1_N Ubiquitin-like 99.5 5.6E-14 1.2E-18 105.9 7.2 70 381-451 1-70 (71)
50 cd01813 UBP_N UBP ubiquitin pr 99.4 1.7E-13 3.6E-18 103.5 6.3 69 305-374 1-72 (74)
51 cd01813 UBP_N UBP ubiquitin pr 99.4 6E-13 1.3E-17 100.5 7.3 70 381-451 1-73 (74)
52 cd01812 BAG1_N Ubiquitin-like 99.4 5.6E-13 1.2E-17 100.4 6.5 69 1-70 1-69 (71)
53 smart00213 UBQ Ubiquitin homol 99.4 7.4E-13 1.6E-17 97.5 6.8 64 381-445 1-64 (64)
54 cd01799 Hoil1_N Ubiquitin-like 99.4 1.2E-12 2.5E-17 98.9 7.3 65 386-451 8-74 (75)
55 cd01799 Hoil1_N Ubiquitin-like 99.4 1.1E-12 2.4E-17 99.1 6.8 69 2-71 2-74 (75)
56 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.7E-12 3.7E-17 96.4 5.1 55 397-451 16-74 (75)
57 smart00213 UBQ Ubiquitin homol 99.3 4.5E-12 9.8E-17 93.3 6.5 64 1-65 1-64 (64)
58 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.9E-12 4.1E-17 96.1 3.8 55 17-71 16-74 (75)
59 cd01814 NTGP5 Ubiquitin-like N 99.3 3E-12 6.5E-17 101.5 4.5 73 2-74 6-92 (113)
60 cd01814 NTGP5 Ubiquitin-like N 99.3 2.9E-12 6.3E-17 101.5 4.1 77 75-151 3-93 (113)
61 TIGR00601 rad23 UV excision re 99.3 7.5E-12 1.6E-16 123.2 7.6 73 1-73 1-76 (378)
62 TIGR00601 rad23 UV excision re 99.3 1E-11 2.3E-16 122.1 8.5 72 381-452 1-75 (378)
63 cd01769 UBL Ubiquitin-like dom 99.2 9.9E-11 2.1E-15 87.4 7.7 67 385-451 2-68 (69)
64 PF11976 Rad60-SLD: Ubiquitin- 99.2 9.8E-11 2.1E-15 88.4 7.4 71 381-451 1-72 (72)
65 cd01795 USP48_C USP ubiquitin- 99.1 9.3E-11 2E-15 89.9 6.6 62 392-453 16-78 (107)
66 cd01795 USP48_C USP ubiquitin- 99.1 6.9E-11 1.5E-15 90.6 5.5 61 317-377 17-78 (107)
67 KOG0010 Ubiquitin-like protein 99.1 1.1E-10 2.3E-15 114.9 6.6 74 380-454 15-88 (493)
68 cd01769 UBL Ubiquitin-like dom 99.0 5.2E-10 1.1E-14 83.5 6.4 67 81-147 2-68 (69)
69 PF11976 Rad60-SLD: Ubiquitin- 99.0 5.6E-10 1.2E-14 84.2 6.4 71 1-71 1-72 (72)
70 KOG0010 Ubiquitin-like protein 99.0 3.6E-10 7.7E-15 111.3 6.7 74 152-226 15-88 (493)
71 KOG0011 Nucleotide excision re 99.0 4.6E-10 9.9E-15 104.9 6.6 73 1-73 1-75 (340)
72 KOG0001 Ubiquitin and ubiquiti 99.0 1.4E-09 2.9E-14 82.1 8.0 73 2-74 1-73 (75)
73 KOG0011 Nucleotide excision re 98.9 9.5E-10 2.1E-14 102.8 5.9 74 77-150 1-76 (340)
74 KOG0001 Ubiquitin and ubiquiti 98.9 7.7E-09 1.7E-13 77.9 9.4 74 383-456 2-75 (75)
75 cd01789 Alp11_N Ubiquitin-like 98.9 6.8E-09 1.5E-13 80.5 8.3 69 382-450 3-79 (84)
76 cd01788 ElonginB Ubiquitin-lik 98.9 5.9E-09 1.3E-13 82.2 7.0 73 382-454 2-82 (119)
77 PF14560 Ubiquitin_2: Ubiquiti 98.8 2.7E-08 5.9E-13 77.9 8.0 70 381-450 2-81 (87)
78 cd01789 Alp11_N Ubiquitin-like 98.7 6.9E-08 1.5E-12 74.8 7.4 70 78-147 3-80 (84)
79 cd01811 OASL_repeat1 2'-5' oli 98.6 1.5E-07 3.3E-12 68.1 7.4 73 153-226 1-78 (80)
80 PLN02560 enoyl-CoA reductase 98.6 8.1E-08 1.7E-12 92.6 7.8 70 381-450 1-81 (308)
81 cd01788 ElonginB Ubiquitin-lik 98.6 1.1E-07 2.3E-12 75.2 6.5 72 1-72 1-80 (119)
82 PF13881 Rad60-SLD_2: Ubiquiti 98.5 3.2E-07 6.9E-12 74.5 7.9 75 76-150 2-90 (111)
83 KOG1769 Ubiquitin-like protein 98.5 7.6E-07 1.6E-11 68.9 9.2 78 380-457 20-97 (99)
84 PF13881 Rad60-SLD_2: Ubiquiti 98.5 5.9E-07 1.3E-11 73.0 8.9 74 153-226 3-90 (111)
85 PLN02560 enoyl-CoA reductase 98.5 2E-07 4.4E-12 89.8 6.9 69 1-69 1-80 (308)
86 PF11543 UN_NPL4: Nuclear pore 98.5 2.2E-07 4.7E-12 71.0 5.5 71 379-450 3-78 (80)
87 PF14560 Ubiquitin_2: Ubiquiti 98.5 5.9E-07 1.3E-11 70.3 7.2 70 78-147 3-82 (87)
88 KOG4248 Ubiquitin-like protein 98.4 2.6E-07 5.6E-12 98.1 6.4 72 155-227 5-76 (1143)
89 KOG4248 Ubiquitin-like protein 98.4 3E-07 6.6E-12 97.6 6.7 74 382-456 4-77 (1143)
90 cd01801 Tsc13_N Ubiquitin-like 98.4 8.5E-07 1.8E-11 67.6 6.3 52 398-449 20-74 (77)
91 cd01811 OASL_repeat1 2'-5' oli 98.3 1.9E-06 4.1E-11 62.5 6.1 70 77-147 1-75 (80)
92 KOG1872 Ubiquitin-specific pro 98.2 1.5E-06 3.1E-11 85.6 6.0 71 305-376 4-75 (473)
93 cd00196 UBQ Ubiquitin-like pro 98.2 8.1E-06 1.8E-10 58.7 7.4 63 389-451 6-68 (69)
94 KOG3493 Ubiquitin-like protein 98.1 8E-07 1.7E-11 62.3 1.3 69 382-450 3-71 (73)
95 cd01801 Tsc13_N Ubiquitin-like 98.1 4.6E-06 9.9E-11 63.6 5.4 52 94-145 20-74 (77)
96 PF11543 UN_NPL4: Nuclear pore 98.1 5.9E-06 1.3E-10 63.1 5.1 71 75-146 3-78 (80)
97 KOG0006 E3 ubiquitin-protein l 97.9 1.5E-05 3.3E-10 74.1 5.5 70 381-450 1-73 (446)
98 cd00196 UBQ Ubiquitin-like pro 97.9 4.1E-05 8.9E-10 54.9 6.4 65 7-71 4-68 (69)
99 KOG4495 RNA polymerase II tran 97.9 1.6E-05 3.4E-10 60.6 3.7 51 392-442 13-65 (110)
100 COG5227 SMT3 Ubiquitin-like pr 97.8 2E-05 4.3E-10 59.3 4.0 78 380-457 24-101 (103)
101 KOG0006 E3 ubiquitin-protein l 97.8 3.1E-05 6.7E-10 72.0 5.7 63 87-149 14-77 (446)
102 PF13019 Telomere_Sde2: Telome 97.7 0.0002 4.3E-09 61.4 8.5 76 381-456 1-88 (162)
103 KOG1769 Ubiquitin-like protein 97.6 0.00065 1.4E-08 52.8 8.8 76 229-304 21-96 (99)
104 PF11470 TUG-UBL1: GLUT4 regul 97.6 0.00022 4.7E-09 51.9 5.9 63 235-297 3-65 (65)
105 KOG4495 RNA polymerase II tran 97.4 0.0003 6.6E-09 53.7 4.5 61 1-61 1-64 (110)
106 KOG3493 Ubiquitin-like protein 97.2 0.00015 3.3E-09 51.0 1.7 67 231-297 4-70 (73)
107 PF08817 YukD: WXG100 protein 97.2 0.00092 2E-08 51.1 5.8 68 382-449 4-78 (79)
108 PF11470 TUG-UBL1: GLUT4 regul 97.2 0.0014 3E-08 47.7 6.2 63 387-449 3-65 (65)
109 KOG1872 Ubiquitin-specific pro 97.1 0.0012 2.7E-08 65.4 6.7 69 382-451 5-74 (473)
110 PF00789 UBX: UBX domain; Int 96.7 0.011 2.4E-07 45.3 8.3 72 379-450 5-81 (82)
111 PF13019 Telomere_Sde2: Telome 96.7 0.0076 1.7E-07 51.9 7.6 75 1-75 1-87 (162)
112 PF08817 YukD: WXG100 protein 96.6 0.0068 1.5E-07 46.3 6.2 68 230-297 4-78 (79)
113 PF10302 DUF2407: DUF2407 ubiq 96.3 0.0081 1.8E-07 47.6 5.3 57 79-135 3-64 (97)
114 PF00789 UBX: UBX domain; Int 96.3 0.029 6.3E-07 43.0 8.3 72 151-222 5-81 (82)
115 smart00166 UBX Domain present 96.1 0.037 8E-07 42.3 8.0 72 379-450 3-79 (80)
116 KOG0013 Uncharacterized conser 96.1 0.006 1.3E-07 54.0 3.9 62 84-145 154-215 (231)
117 PF10302 DUF2407: DUF2407 ubiq 96.1 0.014 3E-07 46.2 5.4 50 162-211 11-64 (97)
118 smart00166 UBX Domain present 96.0 0.035 7.7E-07 42.4 7.4 71 151-221 3-78 (80)
119 cd01770 p47_UBX p47-like ubiqu 95.9 0.051 1.1E-06 41.4 7.7 68 379-446 3-74 (79)
120 cd01767 UBX UBX (ubiquitin reg 95.9 0.065 1.4E-06 40.5 8.3 69 380-450 2-75 (77)
121 COG5417 Uncharacterized small 95.7 0.075 1.6E-06 38.9 7.3 67 383-449 9-80 (81)
122 KOG1639 Steroid reductase requ 95.6 0.02 4.3E-07 52.1 5.2 69 381-449 1-76 (297)
123 KOG0013 Uncharacterized conser 95.4 0.028 6E-07 49.9 5.0 62 390-451 156-217 (231)
124 cd01774 Faf1_like2_UBX Faf1 ik 95.3 0.16 3.4E-06 39.3 8.5 71 379-450 3-83 (85)
125 cd01772 SAKS1_UBX SAKS1-like U 95.3 0.13 2.8E-06 39.2 7.9 68 153-221 5-77 (79)
126 cd01772 SAKS1_UBX SAKS1-like U 95.1 0.11 2.5E-06 39.5 7.3 68 306-374 6-78 (79)
127 PF14533 USP7_C2: Ubiquitin-sp 95.0 0.2 4.2E-06 46.1 9.7 105 315-421 34-163 (213)
128 cd01773 Faf1_like1_UBX Faf1 ik 95.0 0.25 5.5E-06 37.7 8.5 73 379-452 4-81 (82)
129 cd01767 UBX UBX (ubiquitin reg 94.9 0.15 3.2E-06 38.5 7.4 68 305-374 3-75 (77)
130 cd01771 Faf1_UBX Faf1 UBX doma 94.6 0.29 6.4E-06 37.3 8.3 73 379-452 3-80 (80)
131 cd01770 p47_UBX p47-like ubiqu 94.6 0.21 4.6E-06 38.0 7.3 68 152-219 4-75 (79)
132 PRK06437 hypothetical protein; 94.5 0.31 6.8E-06 35.7 8.0 59 389-456 9-67 (67)
133 COG5417 Uncharacterized small 94.5 0.2 4.3E-06 36.8 6.5 67 231-297 9-80 (81)
134 cd01774 Faf1_like2_UBX Faf1 ik 94.4 0.29 6.2E-06 37.8 7.9 70 151-221 3-82 (85)
135 COG5227 SMT3 Ubiquitin-like pr 94.2 0.19 4.1E-06 38.3 6.1 69 229-297 25-93 (103)
136 PF11620 GABP-alpha: GA-bindin 94.2 0.38 8.1E-06 36.5 7.6 59 240-298 4-62 (88)
137 PF14533 USP7_C2: Ubiquitin-sp 94.2 0.39 8.4E-06 44.1 9.6 103 163-267 34-161 (213)
138 cd01773 Faf1_like1_UBX Faf1 ik 93.8 0.41 8.8E-06 36.6 7.5 70 305-375 6-80 (82)
139 KOG3206 Alpha-tubulin folding 93.6 0.22 4.7E-06 44.3 6.3 58 393-450 15-79 (234)
140 cd01771 Faf1_UBX Faf1 UBX doma 93.5 0.44 9.6E-06 36.3 7.2 69 305-374 5-78 (80)
141 PRK08364 sulfur carrier protei 92.6 1.2 2.6E-05 32.9 8.3 66 381-456 5-70 (70)
142 PF12436 USP7_ICP0_bdg: ICP0-b 92.4 0.97 2.1E-05 42.6 9.5 107 319-425 89-224 (249)
143 cd00754 MoaD Ubiquitin domain 92.2 0.62 1.3E-05 35.2 6.6 60 392-456 17-80 (80)
144 PF12436 USP7_ICP0_bdg: ICP0-b 92.1 1.1 2.5E-05 42.2 9.6 122 152-273 68-224 (249)
145 PF15044 CLU_N: Mitochondrial 92.0 0.27 5.9E-06 37.1 4.3 56 397-452 1-58 (76)
146 PF09379 FERM_N: FERM N-termin 91.6 1.1 2.4E-05 33.8 7.4 68 385-452 1-75 (80)
147 PF11620 GABP-alpha: GA-bindin 91.5 0.69 1.5E-05 35.1 5.8 61 392-452 4-64 (88)
148 PRK06488 sulfur carrier protei 91.5 1.1 2.4E-05 32.5 6.9 65 381-456 1-65 (65)
149 PF09379 FERM_N: FERM N-termin 90.8 1.4 3E-05 33.3 7.2 58 233-290 1-65 (80)
150 PF15044 CLU_N: Mitochondrial 90.3 0.58 1.2E-05 35.3 4.5 57 169-225 1-59 (76)
151 PLN02799 Molybdopterin synthas 90.2 1.1 2.5E-05 34.1 6.3 61 391-456 19-82 (82)
152 cd06409 PB1_MUG70 The MUG70 pr 90.1 0.91 2E-05 35.0 5.6 43 383-425 3-48 (86)
153 KOG1639 Steroid reductase requ 89.6 0.49 1.1E-05 43.4 4.3 69 306-374 2-77 (297)
154 PF12754 Blt1: Cell-cycle cont 89.2 0.12 2.5E-06 49.3 0.0 57 400-456 103-181 (309)
155 cd06406 PB1_P67 A PB1 domain i 88.9 1.7 3.6E-05 32.9 6.0 37 392-428 12-48 (80)
156 cd06409 PB1_MUG70 The MUG70 pr 88.6 1.2 2.7E-05 34.2 5.3 44 231-274 3-49 (86)
157 PRK05659 sulfur carrier protei 88.2 3 6.5E-05 30.2 7.1 58 394-456 9-66 (66)
158 PRK06944 sulfur carrier protei 88.0 4.3 9.2E-05 29.3 7.8 57 394-456 9-65 (65)
159 PF14453 ThiS-like: ThiS-like 87.9 3 6.5E-05 29.4 6.4 55 381-451 1-55 (57)
160 cd01760 RBD Ubiquitin-like dom 87.6 1.5 3.2E-05 32.7 5.0 45 3-47 2-46 (72)
161 KOG4583 Membrane-associated ER 87.2 0.29 6.3E-06 46.7 1.4 72 76-147 9-86 (391)
162 smart00455 RBD Raf-like Ras-bi 86.9 1.7 3.8E-05 32.1 5.1 45 3-47 2-46 (70)
163 cd01760 RBD Ubiquitin-like dom 86.9 1.8 3.9E-05 32.2 5.2 44 384-427 3-46 (72)
164 PRK05863 sulfur carrier protei 86.9 3.5 7.7E-05 29.9 6.7 57 394-456 9-65 (65)
165 PRK08053 sulfur carrier protei 86.4 6 0.00013 28.7 7.7 66 381-456 1-66 (66)
166 smart00455 RBD Raf-like Ras-bi 86.3 2.2 4.7E-05 31.6 5.4 48 384-431 3-52 (70)
167 TIGR01682 moaD molybdopterin c 86.2 4.5 9.8E-05 30.6 7.3 59 393-456 18-80 (80)
168 TIGR01683 thiS thiamine biosyn 85.8 4.1 8.8E-05 29.4 6.6 58 394-456 7-64 (64)
169 PRK07440 hypothetical protein; 85.5 6.5 0.00014 29.0 7.6 67 380-456 4-70 (70)
170 cd00565 ThiS ThiaminS ubiquiti 85.5 3.8 8.3E-05 29.6 6.3 59 393-456 7-65 (65)
171 PRK06083 sulfur carrier protei 85.1 4 8.7E-05 31.4 6.5 67 380-456 18-84 (84)
172 PF02597 ThiS: ThiS family; I 84.6 3.9 8.4E-05 30.4 6.3 63 392-456 13-77 (77)
173 PF14836 Ubiquitin_3: Ubiquiti 84.6 8.2 0.00018 29.9 7.9 65 391-456 14-84 (88)
174 cd06406 PB1_P67 A PB1 domain i 84.3 3.8 8.3E-05 31.0 5.8 44 79-124 5-48 (80)
175 smart00666 PB1 PB1 domain. Pho 84.0 3.9 8.5E-05 30.9 6.1 45 382-427 3-47 (81)
176 TIGR01687 moaD_arch MoaD famil 83.5 9 0.0002 29.4 8.1 61 392-456 17-88 (88)
177 cd01818 TIAM1_RBD Ubiquitin do 83.2 3.1 6.7E-05 31.0 4.8 50 232-281 3-52 (77)
178 KOG4583 Membrane-associated ER 82.7 0.55 1.2E-05 44.9 1.0 74 152-225 9-88 (391)
179 cd06407 PB1_NLP A PB1 domain i 82.5 3.4 7.3E-05 31.6 5.1 42 236-277 7-49 (82)
180 smart00295 B41 Band 4.1 homolo 82.4 10 0.00022 34.1 9.3 74 380-453 3-84 (207)
181 KOG3206 Alpha-tubulin folding 82.3 3 6.5E-05 37.3 5.3 60 317-376 15-81 (234)
182 PF02196 RBD: Raf-like Ras-bin 82.3 5 0.00011 29.7 5.8 45 3-47 3-47 (71)
183 KOG4598 Putative ubiquitin-spe 80.8 2.5 5.4E-05 44.6 4.9 182 164-348 878-1105(1203)
184 KOG0012 DNA damage inducible p 79.9 2 4.3E-05 41.8 3.6 64 389-452 11-76 (380)
185 PRK06437 hypothetical protein; 78.8 18 0.00038 26.4 7.7 54 161-223 9-62 (67)
186 PF02196 RBD: Raf-like Ras-bin 78.1 8.3 0.00018 28.5 5.8 53 383-435 3-57 (71)
187 PRK07696 sulfur carrier protei 78.0 16 0.00035 26.6 7.3 61 389-456 6-67 (67)
188 TIGR03028 EpsE polysaccharide 77.3 63 0.0014 30.1 14.8 139 286-450 1-160 (239)
189 KOG2086 Protein tyrosine phosp 77.2 5.2 0.00011 39.5 5.7 67 379-445 304-374 (380)
190 PF14836 Ubiquitin_3: Ubiquiti 76.5 10 0.00023 29.3 6.0 64 87-151 14-83 (88)
191 COG2104 ThiS Sulfur transfer p 76.1 22 0.00048 26.1 7.5 59 393-456 10-68 (68)
192 PF00564 PB1: PB1 domain; Int 75.9 10 0.00022 28.6 6.1 45 382-426 3-47 (84)
193 PF10790 DUF2604: Protein of U 75.7 11 0.00023 27.0 5.4 65 312-376 3-71 (76)
194 KOG2982 Uncharacterized conser 75.6 4 8.6E-05 39.1 4.2 57 394-450 351-415 (418)
195 smart00295 B41 Band 4.1 homolo 75.3 18 0.00038 32.5 8.6 63 228-290 3-72 (207)
196 cd06407 PB1_NLP A PB1 domain i 74.8 11 0.00023 28.8 5.8 64 389-452 8-81 (82)
197 cd00754 MoaD Ubiquitin domain 74.6 13 0.00028 27.8 6.3 58 164-226 17-78 (80)
198 PF14453 ThiS-like: ThiS-like 74.4 6.9 0.00015 27.6 4.2 54 1-70 1-54 (57)
199 smart00666 PB1 PB1 domain. Pho 72.8 18 0.00038 27.2 6.7 45 78-123 3-47 (81)
200 KOG4261 Talin [Cytoskeleton] 72.4 5.7 0.00012 42.5 4.9 100 241-343 15-123 (1003)
201 cd06408 PB1_NoxR The PB1 domai 71.8 15 0.00032 28.4 5.8 40 312-352 9-48 (86)
202 PF10790 DUF2604: Protein of U 71.5 17 0.00038 26.0 5.6 64 237-300 4-71 (76)
203 TIGR02958 sec_mycoba_snm4 secr 71.4 15 0.00033 37.9 7.8 71 382-453 4-81 (452)
204 cd01777 SNX27_RA Ubiquitin dom 71.1 9.8 0.00021 29.3 4.7 39 230-268 3-41 (87)
205 TIGR03028 EpsE polysaccharide 70.1 94 0.002 28.9 21.3 213 210-452 1-237 (239)
206 cd06411 PB1_p51 The PB1 domain 69.8 8.8 0.00019 28.9 4.1 35 392-426 8-42 (78)
207 cd01818 TIAM1_RBD Ubiquitin do 69.1 18 0.0004 27.0 5.5 42 384-425 3-44 (77)
208 PF14732 UAE_UbL: Ubiquitin/SU 69.1 16 0.00034 28.3 5.6 56 395-450 2-67 (87)
209 cd01817 RGS12_RBD Ubiquitin do 68.8 14 0.0003 27.5 4.9 44 5-48 4-47 (73)
210 KOG0012 DNA damage inducible p 68.3 6.6 0.00014 38.3 4.0 68 161-228 11-80 (380)
211 cd01817 RGS12_RBD Ubiquitin do 67.9 17 0.00037 27.0 5.2 45 387-431 6-52 (73)
212 cd01777 SNX27_RA Ubiquitin dom 67.4 12 0.00027 28.7 4.5 39 2-40 3-41 (87)
213 PTZ00380 microtubule-associate 66.3 6.5 0.00014 32.4 3.1 48 391-438 41-88 (121)
214 KOG4250 TANK binding protein k 65.0 12 0.00026 40.0 5.4 45 7-51 321-365 (732)
215 COG5100 NPL4 Nuclear pore prot 63.3 26 0.00055 34.8 6.9 70 381-451 1-78 (571)
216 KOG4598 Putative ubiquitin-spe 63.0 19 0.00041 38.3 6.3 183 88-273 878-1106(1203)
217 KOG2086 Protein tyrosine phosp 62.9 15 0.00033 36.3 5.4 66 229-294 306-375 (380)
218 cd06410 PB1_UP2 Uncharacterize 62.5 25 0.00053 27.9 5.6 39 386-425 18-56 (97)
219 PRK11130 moaD molybdopterin sy 62.1 47 0.001 25.1 7.1 58 394-456 18-81 (81)
220 cd06408 PB1_NoxR The PB1 domai 61.9 43 0.00094 25.8 6.6 46 381-428 3-48 (86)
221 PF12754 Blt1: Cell-cycle cont 61.9 2.6 5.6E-05 40.3 0.0 60 305-364 79-158 (309)
222 PRK11840 bifunctional sulfur c 61.7 33 0.00073 33.4 7.4 58 394-456 9-66 (326)
223 cd05992 PB1 The PB1 domain is 61.0 28 0.00061 25.9 5.7 44 383-427 3-47 (81)
224 cd06396 PB1_NBR1 The PB1 domai 60.5 23 0.0005 27.0 4.9 37 235-273 6-44 (81)
225 PF14847 Ras_bdg_2: Ras-bindin 59.6 27 0.00058 28.1 5.4 36 3-38 3-38 (105)
226 PF08337 Plexin_cytopl: Plexin 58.4 16 0.00035 38.2 5.1 63 391-453 202-290 (539)
227 KOG4261 Talin [Cytoskeleton] 58.2 15 0.00032 39.5 4.7 102 314-418 12-122 (1003)
228 PF14451 Ub-Mut7C: Mut7-C ubiq 56.7 52 0.0011 25.1 6.3 53 390-451 22-75 (81)
229 smart00144 PI3K_rbd PI3-kinase 56.5 64 0.0014 26.0 7.3 63 11-73 29-105 (108)
230 cd01768 RA RA (Ras-associating 56.2 86 0.0019 23.7 8.3 45 390-434 12-64 (87)
231 PF08337 Plexin_cytopl: Plexin 56.1 18 0.00039 37.9 4.9 65 10-74 201-291 (539)
232 cd05992 PB1 The PB1 domain is 55.9 32 0.00069 25.7 5.2 39 237-275 8-47 (81)
233 PLN02799 Molybdopterin synthas 55.0 46 0.001 25.0 6.0 57 163-224 19-78 (82)
234 PF11069 DUF2870: Protein of u 54.9 9 0.00019 30.1 1.9 30 118-147 3-33 (98)
235 PRK01777 hypothetical protein; 54.4 92 0.002 24.5 7.6 65 380-453 3-77 (95)
236 cd06411 PB1_p51 The PB1 domain 54.2 25 0.00053 26.5 4.1 37 240-276 8-44 (78)
237 PRK06488 sulfur carrier protei 53.8 79 0.0017 22.6 6.9 57 161-225 6-62 (65)
238 KOG2689 Predicted ubiquitin re 53.6 28 0.00061 32.8 5.2 70 305-374 211-285 (290)
239 PF10209 DUF2340: Uncharacteri 53.6 26 0.00055 28.9 4.4 54 396-449 21-105 (122)
240 PRK08364 sulfur carrier protei 53.4 86 0.0019 22.9 8.0 52 164-224 15-66 (70)
241 TIGR01682 moaD molybdopterin c 52.3 83 0.0018 23.5 7.0 58 164-226 17-78 (80)
242 PF02597 ThiS: ThiS family; I 51.9 54 0.0012 24.0 5.9 61 164-226 13-75 (77)
243 KOG4250 TANK binding protein k 51.2 35 0.00076 36.6 6.1 44 83-126 321-364 (732)
244 PF00564 PB1: PB1 domain; Int 50.2 56 0.0012 24.5 5.8 45 78-123 3-48 (84)
245 PF02017 CIDE-N: CIDE-N domain 50.1 43 0.00093 25.3 4.8 48 401-451 21-70 (78)
246 PF00788 RA: Ras association ( 50.1 55 0.0012 24.9 5.9 33 240-272 18-52 (93)
247 PF10787 YfmQ: Uncharacterised 50.1 42 0.00091 28.2 5.1 87 19-105 23-123 (149)
248 PF11069 DUF2870: Protein of u 50.0 16 0.00034 28.7 2.6 29 42-71 3-31 (98)
249 TIGR01687 moaD_arch MoaD famil 49.5 1.1E+02 0.0024 23.2 7.5 61 163-227 16-87 (88)
250 PF14847 Ras_bdg_2: Ras-bindin 48.9 26 0.00056 28.2 3.7 36 307-342 3-38 (105)
251 cd01766 Ufm1 Urm1-like ubiquit 48.9 92 0.002 23.1 6.1 64 393-456 18-82 (82)
252 cd06396 PB1_NBR1 The PB1 domai 48.4 56 0.0012 24.9 5.2 30 388-417 7-38 (81)
253 PF02991 Atg8: Autophagy prote 48.2 33 0.00072 27.5 4.3 43 396-438 38-81 (104)
254 PF00788 RA: Ras association ( 48.0 60 0.0013 24.7 5.8 33 392-424 18-52 (93)
255 cd01768 RA RA (Ras-associating 47.9 1.2E+02 0.0026 22.9 8.1 29 9-37 11-39 (87)
256 PF10209 DUF2340: Uncharacteri 47.9 43 0.00092 27.6 4.8 56 169-224 22-108 (122)
257 smart00144 PI3K_rbd PI3-kinase 47.3 1.5E+02 0.0032 23.8 8.2 74 76-149 17-105 (108)
258 cd01764 Urm1 Urm1-like ubuitin 46.0 47 0.001 26.0 4.8 60 395-456 23-94 (94)
259 smart00314 RA Ras association 46.0 68 0.0015 24.5 5.7 52 382-433 6-65 (90)
260 smart00314 RA Ras association 45.3 57 0.0012 25.0 5.2 38 2-39 6-44 (90)
261 cd06410 PB1_UP2 Uncharacterize 44.3 72 0.0016 25.2 5.6 41 81-122 17-57 (97)
262 KOG2982 Uncharacterized conser 44.2 37 0.0008 32.8 4.5 57 318-374 351-415 (418)
263 TIGR02958 sec_mycoba_snm4 secr 43.5 91 0.002 32.2 7.8 71 230-301 4-81 (452)
264 cd00565 ThiS ThiaminS ubiquiti 43.5 1.1E+02 0.0024 21.8 6.2 55 167-226 9-63 (65)
265 cd01775 CYR1_RA Ubiquitin doma 43.1 1E+02 0.0023 24.3 6.1 32 388-419 10-41 (97)
266 TIGR03027 pepcterm_export puta 43.1 2.2E+02 0.0048 24.6 12.7 143 287-451 1-162 (165)
267 PTZ00380 microtubule-associate 42.9 62 0.0014 26.7 5.1 74 74-147 25-104 (121)
268 PF14732 UAE_UbL: Ubiquitin/SU 41.9 1.4E+02 0.003 23.0 6.8 52 248-299 8-68 (87)
269 cd01764 Urm1 Urm1-like ubuitin 41.7 36 0.00078 26.7 3.5 59 167-227 23-93 (94)
270 cd01611 GABARAP Ubiquitin doma 41.1 45 0.00098 27.1 4.1 58 395-452 45-106 (112)
271 PF00794 PI3K_rbd: PI3-kinase 40.9 1.2E+02 0.0025 24.2 6.5 71 381-451 17-101 (106)
272 PF06234 TmoB: Toluene-4-monoo 40.8 1.7E+02 0.0036 22.5 6.9 61 392-452 16-84 (85)
273 KOG3439 Protein conjugation fa 40.6 86 0.0019 25.3 5.4 39 164-202 46-84 (116)
274 cd01787 GRB7_RA RA (RAS-associ 40.5 96 0.0021 23.9 5.5 66 383-448 5-81 (85)
275 cd01787 GRB7_RA RA (RAS-associ 40.0 85 0.0018 24.2 5.1 56 79-134 5-67 (85)
276 PRK07440 hypothetical protein; 39.4 1.5E+02 0.0033 21.7 6.5 62 304-375 4-65 (70)
277 PF03671 Ufm1: Ubiquitin fold 38.8 1E+02 0.0022 22.8 5.1 57 393-449 18-75 (76)
278 smart00266 CAD Domains present 37.8 66 0.0014 24.0 4.1 35 400-434 18-54 (74)
279 KOG0007 Splicing factor 3a, su 36.9 17 0.00038 35.9 1.3 50 83-132 289-339 (341)
280 cd06397 PB1_UP1 Uncharacterize 36.2 78 0.0017 24.0 4.3 38 388-425 7-44 (82)
281 PRK08453 fliD flagellar cappin 35.8 1.1E+02 0.0023 33.3 6.9 86 311-398 134-237 (673)
282 PF14451 Ub-Mut7C: Mut7-C ubiq 35.8 1.4E+02 0.003 22.7 5.8 53 238-299 22-75 (81)
283 KOG2689 Predicted ubiquitin re 34.9 1E+02 0.0022 29.2 5.8 71 151-221 209-284 (290)
284 PF00794 PI3K_rbd: PI3-kinase 34.8 1.6E+02 0.0034 23.4 6.4 70 230-299 18-101 (106)
285 PF08825 E2_bind: E2 binding d 34.6 49 0.0011 25.4 3.2 55 395-450 1-69 (84)
286 cd06398 PB1_Joka2 The PB1 doma 34.5 1.3E+02 0.0029 23.3 5.7 65 389-453 8-88 (91)
287 cd06398 PB1_Joka2 The PB1 doma 34.3 1.1E+02 0.0024 23.8 5.2 40 236-275 7-52 (91)
288 PF10407 Cytokin_check_N: Cdc1 34.2 1.3E+02 0.0029 22.4 5.3 61 391-452 3-70 (73)
289 PRK05738 rplW 50S ribosomal pr 33.7 70 0.0015 25.0 4.0 39 390-428 20-59 (92)
290 KOG3439 Protein conjugation fa 33.5 66 0.0014 25.9 3.7 40 11-50 45-84 (116)
291 KOG4572 Predicted DNA-binding 33.1 56 0.0012 35.6 4.2 52 389-440 3-56 (1424)
292 PF11834 DUF3354: Domain of un 32.8 57 0.0012 24.0 3.1 43 401-449 26-68 (69)
293 TIGR01683 thiS thiamine biosyn 32.7 1.8E+02 0.0039 20.6 6.3 58 161-225 4-61 (64)
294 cd01612 APG12_C Ubiquitin-like 31.9 77 0.0017 24.5 3.9 59 393-452 18-81 (87)
295 cd01615 CIDE_N CIDE_N domain, 31.9 84 0.0018 23.8 3.9 35 400-434 20-56 (78)
296 PF02192 PI3K_p85B: PI3-kinase 31.8 86 0.0019 23.7 4.0 33 241-273 2-42 (78)
297 PF02505 MCR_D: Methyl-coenzym 31.6 3.1E+02 0.0067 23.6 7.6 111 12-136 5-121 (153)
298 smart00266 CAD Domains present 31.5 79 0.0017 23.6 3.7 40 324-363 18-59 (74)
299 PF02991 Atg8: Autophagy prote 31.5 1.9E+02 0.0041 23.2 6.2 44 242-285 36-80 (104)
300 PRK05738 rplW 50S ribosomal pr 31.3 60 0.0013 25.4 3.2 39 314-352 20-59 (92)
301 KOG0007 Splicing factor 3a, su 30.8 26 0.00056 34.7 1.4 50 311-360 289-339 (341)
302 TIGR03636 L23_arch archaeal ri 30.4 84 0.0018 23.7 3.7 33 391-423 15-47 (77)
303 TIGR03636 L23_arch archaeal ri 29.9 66 0.0014 24.2 3.1 32 314-345 14-45 (77)
304 PF00276 Ribosomal_L23: Riboso 29.8 58 0.0013 25.3 2.9 39 391-429 21-60 (91)
305 PRK08453 fliD flagellar cappin 29.7 1.5E+02 0.0033 32.2 6.9 86 235-321 134-236 (673)
306 cd06539 CIDE_N_A CIDE_N domain 27.3 1.2E+02 0.0025 23.0 3.9 34 401-434 21-56 (78)
307 KOG4572 Predicted DNA-binding 27.3 98 0.0021 33.8 4.8 62 237-298 3-68 (1424)
308 PF02017 CIDE-N: CIDE-N domain 27.0 1.4E+02 0.003 22.6 4.3 48 325-375 21-70 (78)
309 cd06536 CIDE_N_ICAD CIDE_N dom 25.9 1.1E+02 0.0025 23.2 3.7 35 400-434 20-58 (80)
310 cd01776 Rin1_RA Ubiquitin doma 25.8 96 0.0021 23.6 3.3 34 240-273 15-49 (87)
311 KOG2561 Adaptor protein NUB1, 25.8 40 0.00086 34.1 1.6 52 394-445 53-104 (568)
312 PF02824 TGS: TGS domain; Int 25.2 1.5E+02 0.0032 20.9 4.1 58 3-69 1-58 (60)
313 PRK14548 50S ribosomal protein 25.1 1.2E+02 0.0026 23.3 3.8 34 390-423 21-54 (84)
314 PF02505 MCR_D: Methyl-coenzym 24.9 2.7E+02 0.006 23.9 6.2 109 321-444 10-124 (153)
315 PRK14548 50S ribosomal protein 24.8 90 0.002 24.0 3.1 32 313-344 20-51 (84)
316 KOG2507 Ubiquitin regulatory p 24.6 1.7E+02 0.0038 29.5 5.7 78 151-228 313-395 (506)
317 TIGR00038 efp translation elon 23.9 87 0.0019 28.0 3.4 86 3-95 38-126 (184)
318 KOG3784 Sorting nexin protein 23.4 1.4E+02 0.003 29.9 4.8 41 8-50 115-155 (407)
319 PRK15078 polysaccharide export 23.3 7.7E+02 0.017 24.8 12.3 140 286-449 84-249 (379)
320 cd06538 CIDE_N_FSP27 CIDE_N do 23.1 1.5E+02 0.0033 22.5 3.9 35 400-434 20-55 (79)
321 PF00276 Ribosomal_L23: Riboso 23.0 71 0.0015 24.9 2.3 40 314-353 20-60 (91)
322 cd01611 GABARAP Ubiquitin doma 23.0 3E+02 0.0064 22.4 6.0 43 242-284 44-87 (112)
323 PF02192 PI3K_p85B: PI3-kinase 22.9 90 0.002 23.6 2.7 21 317-337 2-22 (78)
324 cd01775 CYR1_RA Ubiquitin doma 22.7 2.8E+02 0.0062 21.9 5.5 40 233-272 7-47 (97)
325 cd01615 CIDE_N CIDE_N domain, 21.9 1.4E+02 0.003 22.6 3.5 40 324-363 20-61 (78)
326 PF11816 DUF3337: Domain of un 21.3 2.1E+02 0.0045 28.2 5.8 63 393-455 250-330 (331)
327 KOG3391 Transcriptional co-rep 21.2 76 0.0016 26.6 2.2 27 426-452 110-136 (151)
328 CHL00030 rpl23 ribosomal prote 21.2 1.2E+02 0.0027 23.7 3.3 34 390-423 19-52 (93)
329 TIGR03260 met_CoM_red_D methyl 20.9 5.4E+02 0.012 22.1 7.6 110 13-136 5-119 (150)
330 COG0299 PurN Folate-dependent 20.6 1.7E+02 0.0037 26.4 4.4 47 58-110 126-173 (200)
No 1
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.84 E-value=1.2e-20 Score=151.56 Aligned_cols=96 Identities=44% Similarity=0.642 Sum_probs=92.0
Q ss_pred cccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccC
Q 012736 361 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 440 (457)
Q Consensus 361 ~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~ 440 (457)
..+++.+-+++++..+.++.|+|+|++..|+++.++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~ 87 (103)
T cd01802 8 PFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLNDYN 87 (103)
T ss_pred CccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHcC
Confidence 34667788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEEEecCCC
Q 012736 441 IQKESTLHLVLRLRGG 456 (457)
Q Consensus 441 i~~~~~i~l~~r~~GG 456 (457)
|+++++|++++|++||
T Consensus 88 I~~~stL~l~~~l~GG 103 (103)
T cd01802 88 ISEGCTLKLVLAMRGG 103 (103)
T ss_pred CCCCCEEEEEEecCCC
Confidence 9999999999999998
No 2
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1.2e-21 Score=149.77 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
||+|++++.|+|++++|+|||||+++|++|++++|+|+++|+|+|+|++|+|++||++|+|+.+||+|++++++++
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998877
No 3
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.81 E-value=8.2e-20 Score=146.69 Aligned_cols=99 Identities=42% Similarity=0.623 Sum_probs=93.7
Q ss_pred CcccccccccccceeEEEEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCccc
Q 012736 54 RTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 133 (457)
Q Consensus 54 ~tl~~y~i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~ 133 (457)
+....+++.+-+++|+++++++.|+|+|++.+|+.+.++|++++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~~tL~ 84 (103)
T cd01802 5 KEPPFFNEDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDEYCLN 84 (103)
T ss_pred cCCCccccCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHH
Confidence 34557889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcceeEEEeecc
Q 012736 134 DYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 134 ~y~i~~~s~i~l~~~~~~~ 152 (457)
+|+|.++++||+.++++||
T Consensus 85 dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 85 DYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HcCCCCCCEEEEEEecCCC
Confidence 9999999999999987664
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.80 E-value=1.4e-19 Score=137.46 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=71.7
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|++. ++++++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.||++|||++++||++++|++||
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 78999984 689999999999999999999999999999999999999999999999999999999999999998
No 5
>PTZ00044 ubiquitin; Provisional
Probab=99.77 E-value=1.2e-18 Score=133.38 Aligned_cols=76 Identities=50% Similarity=0.822 Sum_probs=74.9
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++++++++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|+++++++|++.++++||
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.77 E-value=1.6e-18 Score=131.66 Aligned_cols=74 Identities=32% Similarity=0.618 Sum_probs=72.8
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|||+++.|++++++|++++||++||++|++..|+|+++|+|+|+|+.|+|+.+|++|||+++++|+++.|++||
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=2.4e-19 Score=148.59 Aligned_cols=76 Identities=96% Similarity=1.328 Sum_probs=74.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|||+++.|++++++|.++|||+++|+|||+++|||+++|+|+|.|++|+|+++|+||+|+.+||+|++++++++
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999998875
No 8
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.76 E-value=1.3e-18 Score=132.25 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|++|+|+++|++|+|.+++++|+++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999875
No 9
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.76 E-value=1.6e-18 Score=131.67 Aligned_cols=74 Identities=41% Similarity=0.618 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|||||++. ++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+++|++|+|.+++|+|++++++++
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999984 799999999999999999999999999999999999999999999999999999999999998763
No 10
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.74 E-value=6.8e-18 Score=129.29 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=74.8
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++.+|++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 11
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.74 E-value=6.5e-18 Score=128.34 Aligned_cols=73 Identities=36% Similarity=0.653 Sum_probs=71.3
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
|+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||+++++|++++|.
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999885
No 12
>PTZ00044 ubiquitin; Provisional
Probab=99.74 E-value=5.7e-18 Score=129.59 Aligned_cols=75 Identities=49% Similarity=0.803 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|||||++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|+++++++
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~g 75 (76)
T PTZ00044 1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.73 E-value=1.4e-17 Score=127.47 Aligned_cols=76 Identities=55% Similarity=0.965 Sum_probs=74.7
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++.++++++.||++||++|++..|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..+++||
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.73 E-value=7.3e-18 Score=128.66 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcE-EEEE-ecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~-~~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|||||++++|++ ++++ +.+++||.++|++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++.
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 999999999997 7895 8999999999999999999999999999999999999999999999999999998864
No 15
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.72 E-value=2.9e-17 Score=125.75 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=74.8
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
+|+|+|+...|+.+.+++++++||++||++|++..|+|+++|+|+|.|+.|+|+ +|++|||++|++|+++..++||+
T Consensus 1 ~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 1 PMNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred CeEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 589999999999999999999999999999999999999999999999999998 99999999999999999999994
No 16
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.71 E-value=2.6e-17 Score=124.98 Aligned_cols=73 Identities=32% Similarity=0.597 Sum_probs=70.8
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++++++++.+
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~g 73 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRG 73 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999988765
No 17
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.70 E-value=5e-17 Score=124.06 Aligned_cols=74 Identities=36% Similarity=0.634 Sum_probs=70.7
Q ss_pred eeeEEEcCCCCE-EEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 381 MQIFVKTLTGKT-ITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 381 ~~i~v~~~~g~~-~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
|+|+|++.+|++ +.++ +.+++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+-
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 799999999997 6885 8999999999999999999999999999999999999999999999999999999874
No 18
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.68 E-value=1.2e-16 Score=120.00 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=68.1
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|++..|+++.++|++++||++||++|++++|+|+++|+|+|+|++|+|+.+|++|||++||+|+++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999876
No 19
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.68 E-value=1.6e-16 Score=119.31 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=69.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+|.|+|++..|+.+.++|+|++||++||++|++..|+|+++|||+|+|+.|+|+.||++|||++|++|+|..
T Consensus 1 ~~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 1 MIEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred CEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 478999999999999999999999999999999999999999999999999999999999999999999864
No 20
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.67 E-value=5.5e-18 Score=129.84 Aligned_cols=76 Identities=99% Similarity=1.337 Sum_probs=74.6
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|++|+++..|++.+++|.|++||..+|++|....|+||++|+|+|+|+.|+|+.||++|||+..|||+++.|++||
T Consensus 1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG 76 (128)
T KOG0003|consen 1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (128)
T ss_pred CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
No 21
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.67 E-value=2e-16 Score=121.08 Aligned_cols=75 Identities=55% Similarity=0.948 Sum_probs=73.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++++|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+++|++|++.+++++|++++.++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~g 75 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRG 75 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998765
No 22
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.67 E-value=2e-16 Score=121.07 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|+++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++++++++
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 23
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.65 E-value=1.9e-16 Score=118.89 Aligned_cols=70 Identities=39% Similarity=0.733 Sum_probs=67.9
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++|++|++.|
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999754
No 24
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7.7e-17 Score=133.72 Aligned_cols=77 Identities=95% Similarity=1.301 Sum_probs=75.5
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
|+|||+++.|++..++|.+++||..+|++|++.+|||+++|||+|.|++|+|..+|+||+|+..+||++++|++||.
T Consensus 1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg~ 77 (156)
T KOG0004|consen 1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGA 77 (156)
T ss_pred CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCCc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 25
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.65 E-value=2.5e-16 Score=118.29 Aligned_cols=70 Identities=24% Similarity=0.383 Sum_probs=68.4
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|.|+|++..|+++.++|++++||.++|++|+++.|+|+++|+|+|.|+.|+|+.+|++|+|.+++++||.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEE
Confidence 7899999999999999999999999999999999999999999999999999999999999999999985
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=109.04 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=68.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|-|-|+++.|+-+.++++|.|+|+.||+++++++||||.+|+|+|.|+++.|+.|-++|+...+|.+|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 7789999999999999999999999999999999999999999999999999999999999999999984
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.64 E-value=1.1e-15 Score=119.50 Aligned_cols=79 Identities=18% Similarity=0.439 Sum_probs=76.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|+|++.+|+...++|.+++|++.||.+++++.|+|+++|+|+|+|+.|+++.|+++||+++|++|++.+|++||
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999998
No 28
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.64 E-value=5.8e-16 Score=115.55 Aligned_cols=68 Identities=37% Similarity=0.581 Sum_probs=65.7
Q ss_pred EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|++|+|+.+|++|||+++++|+|.+
T Consensus 2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 57888999999999999999999999999999999999999999999999999999999999999976
No 29
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.64 E-value=1e-15 Score=117.46 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.6
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+ |+++|+|+|+|+.|+|+.+|++|||++|++|++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 789999999999999999999999999999999999 9999999999999999999999999999999998864
No 30
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.64 E-value=4.2e-16 Score=116.30 Aligned_cols=67 Identities=37% Similarity=0.606 Sum_probs=65.2
Q ss_pred EEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012736 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
|+.++|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+.++.+|+|.+++++|+++
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 6889999999999999999999999999999999999999999999999999999999999999975
No 31
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.63 E-value=7.6e-16 Score=117.44 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=67.3
Q ss_pred CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
++|+++++++++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+++++++||
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 478999999999999999999999999999999999999999999999999999999999999999998
No 32
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.63 E-value=6.4e-16 Score=118.28 Aligned_cols=75 Identities=25% Similarity=0.491 Sum_probs=72.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|++++++|++++||.++|++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.+++++|++..+.++
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~ 76 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAG 76 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeecccc
Confidence 89999999999999999999999999999999999999999999999999999 9999999999999999887654
No 33
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=2.6e-16 Score=107.21 Aligned_cols=70 Identities=54% Similarity=0.911 Sum_probs=67.5
Q ss_pred EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeE
Q 012736 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~ 146 (457)
|.|.|++++|+.+.+++++.|+|+.+|+++++++||||.+|+|+|+|+++.|+.|-++|++..||++|++
T Consensus 1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999974
No 34
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.7e-15 Score=114.66 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.7
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+|+..+|+++.+++++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++||+++|++|++..|
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 35
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=1.5e-15 Score=116.48 Aligned_cols=73 Identities=38% Similarity=0.705 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCC--CCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~i--p~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+ |+++|+|+|+|+.|+|+.+|++|+|.+++++++.++-
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 899999999999999999999999999999999999 9999999999999999999999999999999987753
No 36
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.61 E-value=1.7e-15 Score=114.64 Aligned_cols=72 Identities=44% Similarity=0.704 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|+|+|++++|+++++++++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|++.+++++|++.+
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999753
No 37
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.61 E-value=2e-15 Score=113.17 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
++.+|+.+.++|++++||++||.+|++..|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 467899999999999999999999999999999999999999999999999999999999999999864
No 38
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.60 E-value=2.6e-15 Score=113.07 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.5
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
++|+|++.+|+ .++++++++||++||++|++..|+|+++|+|.|+|+.|+|+.+|++|||++|++|++++|
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 46899999997 589999999999999999999999999999999999999999999999999999999886
No 39
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.60 E-value=2.2e-15 Score=116.15 Aligned_cols=73 Identities=33% Similarity=0.474 Sum_probs=70.6
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l--~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+|+|+|+...|+++.+++++++||++||.+|++..|+|+++|+| .|+|+.|+|+.+|++|||++|++|+++++
T Consensus 2 ~~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 2 GWDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred ceEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 38999999999999999999999999999999999999999999 88999999999999999999999999988
No 40
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.58 E-value=2.9e-15 Score=115.46 Aligned_cols=72 Identities=32% Similarity=0.451 Sum_probs=70.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceE--eeccEEccCCCcccccccccccceeEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l--~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|+|+|++.+|++++++|++++||.++|++|+++.|+|+++|+| +|+|+.|+|+.+|++|++.+++++|++++
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~ 76 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQ 76 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEE
Confidence 7899999999999999999999999999999999999999999 89999999999999999999999999886
No 41
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.58 E-value=5.6e-15 Score=110.94 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.2
Q ss_pred eEEEcC-CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEE
Q 012736 383 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 450 (457)
Q Consensus 383 i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~ 450 (457)
|+|++. .|+++.++|++++||++||.+|++.+|+|+++|+|+|+|++|+|+ .+|++|||++|++|++.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578888 899999999999999999999999999999999999999999987 58999999999999874
No 42
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.57 E-value=5.1e-15 Score=111.45 Aligned_cols=71 Identities=34% Similarity=0.489 Sum_probs=67.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|.|+|++.+|+ .++++++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|++.+++++|++++
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 67999999997 599999999999999999999999999999999999999999999999999999999864
No 43
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.53 E-value=1.4e-14 Score=108.86 Aligned_cols=68 Identities=35% Similarity=0.543 Sum_probs=64.6
Q ss_pred EEEEcC-CCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEE
Q 012736 3 IFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLV 70 (457)
Q Consensus 3 i~~~~~-~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~ 70 (457)
|+|++. +|++++++|++++||.++|++|++++|+|+++|+|+|+|+.|+|+ .+|++|+|.+++++|+.
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 578999 999999999999999999999999999999999999999999887 68999999999999973
No 44
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.52 E-value=2.7e-14 Score=107.00 Aligned_cols=69 Identities=57% Similarity=0.970 Sum_probs=66.1
Q ss_pred EcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 6 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|.+|+|.++++++++++++
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~~ 69 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKPR 69 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESSE
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEecC
Confidence 578999999999999999999999999999999999999999999999999999999999999988653
No 45
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.51 E-value=2.6e-14 Score=108.95 Aligned_cols=69 Identities=33% Similarity=0.677 Sum_probs=66.0
Q ss_pred CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
++|++++++|++++||.++|++|+...|+|++.|+|+|+|+.|+|+++|++|+|.+++++|++++++++
T Consensus 5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 689999999999999999999999999999999999999999999999999999999999999987653
No 46
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.51 E-value=4e-14 Score=106.72 Aligned_cols=72 Identities=25% Similarity=0.267 Sum_probs=64.3
Q ss_pred ceeeEEEcCCCCEE--EEEecCCccHHHHHHHHhhhcC--CCCCCeEEEEcCeecCCCCcccccC--CCCCCEEEEEE
Q 012736 380 GMQIFVKTLTGKTI--TLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~--~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~l~~~g~~L~d~~tL~~~~--i~~~~~i~l~~ 451 (457)
++.++|++++++.+ ++++++++||++||++|++..+ .|+++|+|+|.|+.|+|+.||++|+ +.+|.||||+.
T Consensus 1 ~i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 1 PVTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CeEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 46899999999984 4555899999999999999874 4579999999999999999999996 99999999985
No 47
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.50 E-value=7.7e-14 Score=109.14 Aligned_cols=76 Identities=18% Similarity=0.467 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|+.++++|.+++|+..||++++++.|+|+++|+|+|+|+.|+++.|+++|++.++++|+++++++++
T Consensus 12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987654
No 48
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.50 E-value=3.9e-14 Score=106.78 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=63.7
Q ss_pred CeEEEEcCCCcE--EEEEecccccHHHHHHHHhhhhC--CCCccceEeeccEEccCCCcccccc--cccccceeEEE
Q 012736 1 MQIFVKTLTGKT--ITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYN--IQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~--~~~~v~~~dtv~~ik~ki~~~~~--ip~~~q~l~~~g~~L~~~~tl~~y~--i~~~sti~l~~ 71 (457)
|.++|++++|+. |++++++++||.++|++|.+..+ .|+++|+|+|.|+.|+|+.||++|. +.++.|+|||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 578999999998 55666899999999999998874 5589999999999999999999995 99999999975
No 49
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.50 E-value=5.6e-14 Score=105.91 Aligned_cols=70 Identities=29% Similarity=0.469 Sum_probs=66.2
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
++|+|++. |+.+.+++++++||++||.+|++.+|+|+++|+|.|+|+.|+|+.+|++|||++|++|++..
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 46889986 88999999999999999999999999999999999999999999999999999999999864
No 50
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.45 E-value=1.7e-13 Score=103.50 Aligned_cols=69 Identities=23% Similarity=0.440 Sum_probs=64.8
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEe---cCeeccCCCcccccccccCceEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~---~g~~L~d~~~l~~~~i~~~~~l~l~ 374 (457)
+.|+|+ |+|++|.+++++++||++||++|++++|+|+++|+|++ +|+.++|+.+|++|++.+++.++|+
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 357776 99999999999999999999999999999999999996 8999999999999999999999986
No 51
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.41 E-value=6e-13 Score=100.46 Aligned_cols=70 Identities=23% Similarity=0.413 Sum_probs=63.8
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE---cCeecCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~---~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|.|.|+ ..|+++.++|++++||++||++|++.+|+|+++|+|+| .|+.+.|+.+|++|+|++|+.|.|..
T Consensus 1 ~~i~vk-~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lmG 73 (74)
T cd01813 1 VPVIVK-WGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMMG 73 (74)
T ss_pred CEEEEE-ECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEEe
Confidence 356666 46889999999999999999999999999999999996 89999999999999999999998763
No 52
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.40 E-value=5.6e-13 Score=100.42 Aligned_cols=69 Identities=29% Similarity=0.490 Sum_probs=66.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|.|++. |+++++++.+++||.++|++|++..|+|++.|+|+|+|+.|+|+.+|++|++.++++++++
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~ 69 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLL 69 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEe
Confidence 68999997 9999999999999999999999999999999999999999999999999999999999875
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.39 E-value=7.4e-13 Score=97.50 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.1
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~ 445 (457)
|+|+|++.+ +.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|.|+.+|++|||++|+
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 689999988 6899999999999999999999999999999999999999999999999999885
No 54
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.38 E-value=1.2e-12 Score=98.92 Aligned_cols=65 Identities=29% Similarity=0.364 Sum_probs=59.3
Q ss_pred EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC-CCCcccccCCC-CCCEEEEEE
Q 012736 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 451 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~-d~~tL~~~~i~-~~~~i~l~~ 451 (457)
+...|.+++++|++++||++||.+|++++|+|+++|+| |+|+.|. |+.+|++||++ +|++++|.+
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 34567899999999999999999999999999999999 9999996 66899999999 889999864
No 55
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.38 E-value=1.1e-12 Score=99.08 Aligned_cols=69 Identities=29% Similarity=0.372 Sum_probs=62.1
Q ss_pred eEEEEc--CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEcc-CCCcccccccc-cccceeEEE
Q 012736 2 QIFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE-DGRTLADYNIQ-KESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~-~~~tl~~y~i~-~~sti~l~~ 71 (457)
.++|++ ..|.+++++|.+++||.+||++|++++|+|++.|+| |+|+.|. |+++|++|++. +++++||.+
T Consensus 2 ~~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 2 NVSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred EEEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 466765 578999999999999999999999999999999999 9999995 67899999998 779999864
No 56
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.33 E-value=1.7e-12 Score=96.39 Aligned_cols=55 Identities=33% Similarity=0.549 Sum_probs=50.0
Q ss_pred ec-CCccHHHHHHHHhhhc--CCC-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 397 VE-SSDTIDNVKAKIQDKE--GIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 397 v~-~~~tV~~lK~~i~~~~--gip-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+ .++||.+||++|+++. |++ +++|+|+|.|+.|+|++||++|||++|++|+++.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 44 4679999999999995 575 9999999999999999999999999999999975
No 57
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.31 E-value=4.5e-12 Score=93.28 Aligned_cols=64 Identities=61% Similarity=0.864 Sum_probs=61.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 65 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~s 65 (457)
|+|+|++.+ +++.++|++++||.++|++|+++.|+|++.|+|+|+|+.|.|+.+|++|++.+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 899999998 7999999999999999999999999999999999999999999999999998875
No 58
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.30 E-value=1.9e-12 Score=96.14 Aligned_cols=55 Identities=33% Similarity=0.582 Sum_probs=50.2
Q ss_pred ecc-cccHHHHHHHHhhh--hCCC-CccceEeeccEEccCCCcccccccccccceeEEE
Q 012736 17 VES-SDTIDNVKAKIQDK--EGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 17 v~~-~dtv~~ik~ki~~~--~~ip-~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
|.| ++||.++|++|+++ +|+| +++|+|+|.|++|+|++||++|+|.+++++|++.
T Consensus 16 ~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 16 VSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred cCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 444 79999999999999 4675 9999999999999999999999999999999975
No 59
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.28 E-value=3e-12 Score=101.47 Aligned_cols=73 Identities=29% Similarity=0.414 Sum_probs=64.1
Q ss_pred eEEEEcCCCcEE-EEEecccccHHHHHHHHh-----hhhCCC--CccceEeeccEEccCCCcccccc------cccccce
Q 012736 2 QIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKESTL 67 (457)
Q Consensus 2 ~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~-----~~~~ip--~~~q~l~~~g~~L~~~~tl~~y~------i~~~sti 67 (457)
.|-|+..+|.-+ +..+.++|||.++|++|+ +++|+| +++|+|+|+|++|+|++||++|+ +...+|+
T Consensus 6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~Tm 85 (113)
T cd01814 6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITM 85 (113)
T ss_pred EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEE
Confidence 466788888543 478889999999999999 666777 99999999999999999999999 8889999
Q ss_pred eEEEEec
Q 012736 68 HLVLRLR 74 (457)
Q Consensus 68 ~l~~~~~ 74 (457)
|+++++.
T Consensus 86 Hvvlr~~ 92 (113)
T cd01814 86 HVVVQPP 92 (113)
T ss_pred EEEecCC
Confidence 9999865
No 60
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=99.28 E-value=2.9e-12 Score=101.54 Aligned_cols=77 Identities=27% Similarity=0.377 Sum_probs=66.0
Q ss_pred CcEEEEEEccCCcEE-EEEEeCCCCHHHHHHHHh-----hhhCCC--CCCeEEEecCccccccCcccccc------cccC
Q 012736 75 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQ-----DKEGIP--PDQQRLIFAGKQLEDGRTLADYN------IQKE 140 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~-~l~v~~~~tV~~lK~~i~-----~~~gip--~~~q~L~~~g~~L~d~~tl~~y~------i~~~ 140 (457)
+.+.|.++..+|..+ +..+++++||+++|++|+ +++|+| +++|+|+|+||.|+|++||++|+ +...
T Consensus 3 ~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~ 82 (113)
T cd01814 3 EQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGV 82 (113)
T ss_pred ccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCc
Confidence 356778888888664 678899999999999999 555666 99999999999999999999999 7777
Q ss_pred CcceeEEEeec
Q 012736 141 STLHLVLRLRG 151 (457)
Q Consensus 141 s~i~l~~~~~~ 151 (457)
.++|+++++..
T Consensus 83 ~TmHvvlr~~~ 93 (113)
T cd01814 83 ITMHVVVQPPL 93 (113)
T ss_pred eEEEEEecCCC
Confidence 89999998643
No 61
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=7.5e-12 Score=123.18 Aligned_cols=73 Identities=30% Similarity=0.601 Sum_probs=70.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhC---CCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~---ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+||+++|++++++|++++||.+||++|++..| +|+++|+|+|+|+.|+|+++|++|+|.+++++++.+..
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k 76 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSK 76 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEecc
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999987753
No 62
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=1e-11 Score=122.15 Aligned_cols=72 Identities=31% Similarity=0.618 Sum_probs=69.5
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcC---CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g---ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+||+..|+++.++|++++||.+||.+|++..| +|+++|+|+|+|+.|+|+++|++|||+++++|++.+.
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~ 75 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVS 75 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEec
Confidence 78999999999999999999999999999999998 9999999999999999999999999999999988765
No 63
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.17 E-value=9.9e-11 Score=87.43 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.3
Q ss_pred EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+..+|+.+.+.+++++||.+||.+|+..+|+|++.|+|.|+|+.|+|+.+|++|++.++++|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5666789999999999999999999999999999999999999999999999999999999999864
No 64
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.16 E-value=9.8e-11 Score=88.37 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=65.9
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+|++++.+|+.+.+.|.+++++..|+..+++..|+|+ +.++|.|+|+.|+++.|++++|+++|++|+|.+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 67999999999999999999999999999999999999 999999999999999999999999999999864
No 65
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.15 E-value=9.3e-11 Score=89.93 Aligned_cols=62 Identities=27% Similarity=0.314 Sum_probs=57.2
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCcccccCCCCCCEEEEEEec
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r~ 453 (457)
...++|++++||.+||.+|+..+++||++|+|.++|+.|.| ..||++|||.++|+|.|.+..
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 46788999999999999999999999999999999999975 569999999999999998753
No 66
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.14 E-value=6.9e-11 Score=90.63 Aligned_cols=61 Identities=28% Similarity=0.334 Sum_probs=56.6
Q ss_pred EEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeec-cCCCcccccccccCceEEEEEEe
Q 012736 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLADYNIQKESTLHLVLRL 377 (457)
Q Consensus 317 ~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L-~d~~~l~~~~i~~~~~l~l~~~~ 377 (457)
.+++|++++||++||.+|.+.+++||..|+|.++|..| +|+++|++||+.++++++|..+.
T Consensus 17 ~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llide 78 (107)
T cd01795 17 KALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKADE 78 (107)
T ss_pred ceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEecC
Confidence 56789999999999999999999999999999999988 77899999999999999998653
No 67
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.10 E-value=1.1e-10 Score=114.86 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=70.1
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
.++|.|++.++ .+.+.|..+.||.+||+.|....++|+++++|+|.||.|.|+.||..|||++|+||||+++..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 36799999988 799999999999999999999999999999999999999999999999999999999998753
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.03 E-value=5.2e-10 Score=83.47 Aligned_cols=67 Identities=67% Similarity=0.992 Sum_probs=63.0
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEE
Q 012736 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
|+..+|+.+.+++.+++||.+||++|+...|+|++.|+|.|+|+.|+|+.+|.+|++.+++.|++..
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 5667899999999999999999999999999999999999999999999999999999999988864
No 69
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.03 E-value=5.6e-10 Score=84.19 Aligned_cols=71 Identities=34% Similarity=0.633 Sum_probs=66.2
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCC-ccceEeeccEEccCCCcccccccccccceeEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~-~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
|+|+|+..+|+.+.+.|.+++++..++++..++.|+|+ +..+|+|+|+.|+++.|+++|++.+++++++++
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 68999999999999999999999999999999999999 999999999999999999999999999999864
No 70
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.03 E-value=3.6e-10 Score=111.26 Aligned_cols=74 Identities=36% Similarity=0.565 Sum_probs=69.8
Q ss_pred ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
.+.|+||+... ...+.|..+.||.+||++|...+++|+++++|||+||.|+|+.||..|||++|.||||+.+..
T Consensus 15 ~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~ 88 (493)
T KOG0010|consen 15 LIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQ 88 (493)
T ss_pred eeEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccC
Confidence 46789999888 789999999999999999999999999999999999999999999999999999999999854
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.02 E-value=4.6e-10 Score=104.92 Aligned_cols=73 Identities=38% Similarity=0.667 Sum_probs=69.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhC--CCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~--ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|.|+||++.|++|++++.|+|||.++|.+|+...| .|+++|.|+|+|+.|.|+.++.+|+|..++-+.+.+.-
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK 75 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSK 75 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEec
Confidence 89999999999999999999999999999999988 99999999999999999999999999999988877753
No 72
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.01 E-value=1.4e-09 Score=82.05 Aligned_cols=73 Identities=84% Similarity=1.127 Sum_probs=69.4
Q ss_pred eEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
++++.+..|+++++++.++++|..+|.+|..+.|+|++.|++.+.|+.|.|+.++.+|+|..+++++++.+++
T Consensus 1 ~~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 1 QIFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred CEEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 4788999999999999999999999999999999999999999999999999999999999999999987754
No 73
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.95 E-value=9.5e-10 Score=102.82 Aligned_cols=74 Identities=38% Similarity=0.657 Sum_probs=70.2
Q ss_pred EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhC--CCCCCeEEEecCccccccCcccccccccCCcceeEEEee
Q 012736 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
|.|+||++.+..|++++.+++||.++|.+|+...| .|+++|+|+|+|+.|.|+.++.+|++.+++.|.+++.-.
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 68999999999999999999999999999999988 999999999999999999999999999999998887543
No 74
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.93 E-value=7.7e-09 Score=77.86 Aligned_cols=74 Identities=84% Similarity=1.159 Sum_probs=70.1
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+++.+..|+.+.+.+.+..+|..+|.+|+...|+|++.|++.+.|+.|+|+.+|++|+|..++++++..+++++
T Consensus 2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~~~ 75 (75)
T KOG0001|consen 2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLRGG 75 (75)
T ss_pred EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 56777889999999999999999999999999999999999999999999999999999999999999998764
No 75
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.90 E-value=6.8e-09 Score=80.47 Aligned_cols=69 Identities=22% Similarity=0.401 Sum_probs=56.8
Q ss_pred eeEEEcC-CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-EcCe-----ec-CCCCcccccCCCCCCEEEEE
Q 012736 382 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 382 ~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~-----~L-~d~~tL~~~~i~~~~~i~l~ 450 (457)
.|+|... +....+-+++++.||++||++++..+|+||+.|+|. |.|+ .| +|+.+|++||+++|++||+.
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVv 79 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVI 79 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEE
Confidence 4555543 233455569999999999999999999999999995 7887 56 57779999999999999986
No 76
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.88 E-value=5.9e-09 Score=82.25 Aligned_cols=73 Identities=29% Similarity=0.423 Sum_probs=61.6
Q ss_pred eeEEEcCCC-CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCC-------CCCCEEEEEEec
Q 012736 382 QIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLRL 453 (457)
Q Consensus 382 ~i~v~~~~g-~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-------~~~~~i~l~~r~ 453 (457)
.+|++-... .++-+++.+++||.+||.+|+.....||++|+|+..+..|+|++||++||+ +...++-|.+|.
T Consensus 2 dvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~ 81 (119)
T cd01788 2 DVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRS 81 (119)
T ss_pred ceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEec
Confidence 344443333 356678999999999999999999999999999988889999999999999 678899988885
Q ss_pred C
Q 012736 454 R 454 (457)
Q Consensus 454 ~ 454 (457)
.
T Consensus 82 ~ 82 (119)
T cd01788 82 S 82 (119)
T ss_pred C
Confidence 3
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.78 E-value=2.7e-08 Score=77.87 Aligned_cols=70 Identities=27% Similarity=0.565 Sum_probs=56.6
Q ss_pred eeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc----Ce---ec-CCCCcccccCCCCCCEEEEE
Q 012736 381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK---QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~----g~---~L-~d~~tL~~~~i~~~~~i~l~ 450 (457)
+.|+|..... ...+..++++.||++||.+|+..+|+|++.|+|.+. +. .+ +|+.+|++||+++|++|++.
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~ 81 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVV 81 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEE
Confidence 3566665544 488899999999999999999999999999999886 11 34 46789999999999999985
No 78
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.68 E-value=6.9e-08 Score=74.83 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=57.3
Q ss_pred EEEEEccC-CcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE-ecCc-----cc-cccCcccccccccCCcceeEE
Q 012736 78 QIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGK-----QL-EDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 78 ~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~-----~L-~d~~tl~~y~i~~~s~i~l~~ 147 (457)
.|.|.... .......++++.||.+||++++...|+||..|+|. |.|+ .| +|+.+|+.|++.+|.+||+.-
T Consensus 3 ~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD 80 (84)
T cd01789 3 TVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVID 80 (84)
T ss_pred EEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEe
Confidence 45554332 33455669999999999999999999999999994 7887 45 688999999999999999864
No 79
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.63 E-value=1.5e-07 Score=68.09 Aligned_cols=73 Identities=27% Similarity=0.395 Sum_probs=65.2
Q ss_pred eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEEC---C--eecCCCCCccccCcCcCcEEEEEEEec
Q 012736 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g--~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
++|+|+..++...++.|+|..+|..+|++|...+|++- .|||.|. | ..|.+..+|++|||..+..|.++.+.+
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 47889999999999999999999999999999999998 8999986 2 457899999999999999998876644
No 80
>PLN02560 enoyl-CoA reductase
Probab=98.63 E-value=8.1e-08 Score=92.57 Aligned_cols=70 Identities=31% Similarity=0.544 Sum_probs=62.1
Q ss_pred eeeEEEcCCCCEE---EEEecCCccHHHHHHHHhhhcCC-CCCCeEEEEc---C----eecCCCCcccccCCCCCCEEEE
Q 012736 381 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g~~~---~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~~~---g----~~L~d~~tL~~~~i~~~~~i~l 449 (457)
|+|.|+..+|+.+ ++++++++||+|||.+|+++.++ ++++|||.+. | +.|.|+++|++||+++|++|++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 6788998888887 79999999999999999999987 8999999983 3 4889999999999999999876
Q ss_pred E
Q 012736 450 V 450 (457)
Q Consensus 450 ~ 450 (457)
.
T Consensus 81 k 81 (308)
T PLN02560 81 K 81 (308)
T ss_pred E
Confidence 3
No 81
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.61 E-value=1.1e-07 Score=75.20 Aligned_cols=72 Identities=32% Similarity=0.474 Sum_probs=63.0
Q ss_pred CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccc-------ccccceeEEEE
Q 012736 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-------QKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-------~~~sti~l~~~ 72 (457)
|.+|+..-.-| |+.++++++.||.+||++|+.-...|++.|+|+-.+..|+|++||.||++ +.-.++-|.++
T Consensus 1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r 80 (119)
T cd01788 1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFR 80 (119)
T ss_pred CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEe
Confidence 78999987665 67799999999999999999999999999999977888999999999999 45556666655
No 82
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.54 E-value=3.2e-07 Score=74.51 Aligned_cols=75 Identities=29% Similarity=0.492 Sum_probs=56.4
Q ss_pred cEEEEEEccCCc-EEEEEEeCCCCHHHHHHHHhhhhC-------CCCCCeEEEecCccccccCcccccccccCC------
Q 012736 76 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------ 141 (457)
Q Consensus 76 ~~~i~vk~~~g~-~~~l~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tl~~y~i~~~s------ 141 (457)
.+.|.++..+|+ ...+..++++||++||+.|...+. ..++..+|+|.||.|+|+.+|++|.+..+.
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~ 81 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPT 81 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--E
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCE
Confidence 456777778998 789999999999999999987542 235679999999999999999999987665
Q ss_pred cceeEEEee
Q 012736 142 TLHLVLRLR 150 (457)
Q Consensus 142 ~i~l~~~~~ 150 (457)
++|+++++.
T Consensus 82 vmHlvvrp~ 90 (111)
T PF13881_consen 82 VMHLVVRPN 90 (111)
T ss_dssp EEEEEE-SS
T ss_pred EEEEEecCC
Confidence 678887654
No 83
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7.6e-07 Score=68.89 Aligned_cols=78 Identities=18% Similarity=0.460 Sum_probs=73.5
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
-+++.|+..+|....+.|..+++...|+..-+++.|++.+..|+.|+|+.+.+.+|-++++.++|+.|.+...+.||+
T Consensus 20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 356777777888889999999999999999999999999999999999999999999999999999999999999995
No 84
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=98.52 E-value=5.9e-07 Score=72.97 Aligned_cols=74 Identities=30% Similarity=0.504 Sum_probs=55.5
Q ss_pred eeeeEeeccCc-eEEeeecCCchHHHHHHHHhhhhC-------CCCCceEEEECCeecCCCCCccccCcCcCc------E
Q 012736 153 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEG-------IPPDQQRLIFAGKQLEDGRTLADYNIQKES------T 218 (457)
Q Consensus 153 ~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~i~~~~g-------ip~~~q~L~~~g~~L~d~~tL~~y~i~~~~------~ 218 (457)
+.+.+...+|. ..++.+++++||++||+.|...|. ..+...||||.||.|+|+.||+++.+..+. +
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~v 82 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTV 82 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EE
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEE
Confidence 44556667888 678999999999999999987762 235678999999999999999999987765 6
Q ss_pred EEEEEEec
Q 012736 219 LHLVLRLR 226 (457)
Q Consensus 219 i~l~~~~~ 226 (457)
+||+++++
T Consensus 83 mHlvvrp~ 90 (111)
T PF13881_consen 83 MHLVVRPN 90 (111)
T ss_dssp EEEEE-SS
T ss_pred EEEEecCC
Confidence 78888765
No 85
>PLN02560 enoyl-CoA reductase
Probab=98.51 E-value=2e-07 Score=89.84 Aligned_cols=69 Identities=32% Similarity=0.560 Sum_probs=62.6
Q ss_pred CeEEEEcCCCcEE---EEEecccccHHHHHHHHhhhhCC-CCccceEeec---c----EEccCCCcccccccccccceeE
Q 012736 1 MQIFVKTLTGKTI---TLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIFA---G----KQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 1 ~~i~~~~~~g~~~---~~~v~~~dtv~~ik~ki~~~~~i-p~~~q~l~~~---g----~~L~~~~tl~~y~i~~~sti~l 69 (457)
|+|.|+..+|+++ +++++++.||++||.+|+++.++ ++++|+|.+. | ..|+|+++|++|++.+++++++
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy~ 80 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVVF 80 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEEE
Confidence 8999999999998 79999999999999999999986 8999999983 3 3889999999999999998665
No 86
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.50 E-value=2.2e-07 Score=70.98 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=45.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC---eec--CCCCcccccCCCCCCEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQL--EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~~L--~d~~tL~~~~i~~~~~i~l~ 450 (457)
..|-|-|++.+| .+-+++++++|+.+|+++|++..++|+..|.|+.+. ..+ .++.||+++|++.||.|+|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 467889999988 678899999999999999999999999999887542 355 46789999999999999974
No 87
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.46 E-value=5.9e-07 Score=70.26 Aligned_cols=70 Identities=27% Similarity=0.544 Sum_probs=55.7
Q ss_pred EEEEEccCC--cEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec-C------ccc-cccCcccccccccCCcceeEE
Q 012736 78 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-G------KQL-EDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 78 ~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g------~~L-~d~~tl~~y~i~~~s~i~l~~ 147 (457)
.|+|..... ......++.+.||.+||.+++...|+|++.|+|.+. . ..+ +|.++|.+|++.+|.+||+.-
T Consensus 3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 456654443 478899999999999999999999999999999876 1 123 578999999999999998864
No 88
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.6e-07 Score=98.13 Aligned_cols=72 Identities=35% Similarity=0.597 Sum_probs=69.5
Q ss_pred eeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEecC
Q 012736 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (457)
|.||+++.+..++.+...+||.++|..|..+.+|+.+.||+||.||+|.|++++++|+| +|.+|||+-|++.
T Consensus 5 v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp 76 (1143)
T KOG4248|consen 5 VLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPP 76 (1143)
T ss_pred eeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCC
Confidence 78999999999999999999999999999999999999999999999999999999999 9999999999653
No 89
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3e-07 Score=97.61 Aligned_cols=74 Identities=34% Similarity=0.579 Sum_probs=69.9
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+.||+++.+++++.+...+||.+||..|.++.+|+.+.||++|.|+.|.|++++.+||| +|-+|||+-|-..|
T Consensus 4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~v-dgk~~hlverppp~ 77 (1143)
T KOG4248|consen 4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDDKKVQEYNV-DGKVIHLVERPPPQ 77 (1143)
T ss_pred ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccchhhhhccC-CCeEEEeeccCCCC
Confidence 488999999999999999999999999999999999999999999999999999999999 99999999885433
No 90
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.38 E-value=8.5e-07 Score=67.60 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=47.4
Q ss_pred cCCccHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCCCcccccCCCCCCEEEE
Q 012736 398 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 398 ~~~~tV~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
+++.||++||..|++..+ +++++|+|. +.|+.|.|+.+|++||+.+|++||+
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 588999999999999875 589999996 7899999999999999999999987
No 91
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=98.31 E-value=1.9e-06 Score=62.51 Aligned_cols=70 Identities=27% Similarity=0.372 Sum_probs=61.3
Q ss_pred EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecC-----ccccccCcccccccccCCcceeEE
Q 012736 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-----KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-----~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
++|+|+..++....+.|+|..+|..+|++|....|++- .|+|.|.. +.|.+..+|++|||-.+..|.+.-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lle 75 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLE 75 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccccccHhhhcceeccEEEEEe
Confidence 47899999999999999999999999999999999988 99999862 457899999999998777666653
No 92
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.5e-06 Score=85.61 Aligned_cols=71 Identities=24% Similarity=0.417 Sum_probs=65.8
Q ss_pred eeeEEEecCCcEEEEE-eeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012736 305 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~-v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
++|.|+ |.|+.|.++ ++.++|+..+|+++...|||||++|+++.+|+.+.|+..+..++|+++.+++++-+
T Consensus 4 ~~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt 75 (473)
T KOG1872|consen 4 DTVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGT 75 (473)
T ss_pred ceEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeecc
Confidence 356665 999999987 99999999999999999999999999999999999999999999999999999843
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.18 E-value=8.1e-06 Score=58.71 Aligned_cols=63 Identities=46% Similarity=0.697 Sum_probs=59.2
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+|....+.++++.|+.++|..++++.|++++.+.|+++|..+.+...+.++++.+++.|++..
T Consensus 6 ~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 6 DGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 677889999999999999999999999999999999999999999988999999999999864
No 94
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=8e-07 Score=62.25 Aligned_cols=69 Identities=26% Similarity=0.398 Sum_probs=63.8
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
++.+.+.-|+...+.+.+++||+|+|..|++.+|-.++..+|--|+..+.|.-+|++|.|.+|..+.+.
T Consensus 3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lely 71 (73)
T KOG3493|consen 3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLELY 71 (73)
T ss_pred eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEEe
Confidence 456667779999999999999999999999999999999999999999999999999999999988875
No 95
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.13 E-value=4.6e-06 Score=63.57 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=46.3
Q ss_pred eCCCCHHHHHHHHhhhhC-CCCCCeEEE--ecCccccccCcccccccccCCccee
Q 012736 94 ESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 94 ~~~~tV~~lK~~i~~~~g-ip~~~q~L~--~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
+++.||.+||..|+...+ +++++|+|. +.|+.|.|+.+|++||+.+|+++++
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 478899999999998875 689999985 7899999999999999999998775
No 96
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=98.08 E-value=5.9e-06 Score=63.09 Aligned_cols=71 Identities=28% Similarity=0.426 Sum_probs=43.5
Q ss_pred CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec---Cccc--cccCcccccccccCCcceeE
Q 012736 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL--EDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~---g~~L--~d~~tl~~y~i~~~s~i~l~ 146 (457)
+.|-|.|++.+| ...+++++++|+.+|+++|++..++|.+.|.|+.+ ...+ .++.+++++|+++|+.++|.
T Consensus 3 ~~milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 3 SSMILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp ---EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred ccEEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 456778887777 55789999999999999999999999999988643 2345 46899999999999988764
No 97
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=1.5e-05 Score=74.09 Aligned_cols=70 Identities=30% Similarity=0.599 Sum_probs=61.0
Q ss_pred eeeEEEcC---CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736 381 MQIFVKTL---TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~---~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
|.++|+.. ....+.++|+.+..|.+||+.++.+.|+|+++.+++|.|++|.|+.|+..|++...|.+++.
T Consensus 1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~ 73 (446)
T KOG0006|consen 1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIM 73 (446)
T ss_pred CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhh
Confidence 44556543 33457889999999999999999999999999999999999999999999999988888866
No 98
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.88 E-value=4.1e-05 Score=54.88 Aligned_cols=65 Identities=45% Similarity=0.653 Sum_probs=59.7
Q ss_pred cCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEE
Q 012736 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
..+|....+.+.+++|+.++|+++.++.|.+++.|.|+++|..+.+...+.+|.+..++++++..
T Consensus 4 ~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 4 LNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred ecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34788999999999999999999999999999999999999999998888899999999998753
No 99
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.86 E-value=1.6e-05 Score=60.60 Aligned_cols=51 Identities=31% Similarity=0.423 Sum_probs=45.2
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cC-eecCCCCcccccCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNIQ 442 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g-~~L~d~~tL~~~~i~ 442 (457)
++-+++.++.||.+||.+++....-|+++|+|+. .. ..|+|.+||++||..
T Consensus 13 tif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft 65 (110)
T KOG4495|consen 13 TIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT 65 (110)
T ss_pred eEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence 5667899999999999999999999999999987 33 577999999999764
No 100
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=97.85 E-value=2e-05 Score=59.34 Aligned_cols=78 Identities=17% Similarity=0.359 Sum_probs=73.0
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
.+.+.|...+|....+++..+++...|....+.+.|-..+..|+.|+|+.++.++|-++++.++++.|.++....||+
T Consensus 24 hinLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG~ 101 (103)
T COG5227 24 HINLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGGA 101 (103)
T ss_pred ccceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcCc
Confidence 356677778888999999999999999999999999999999999999999999999999999999999999999995
No 101
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=3.1e-05 Score=72.04 Aligned_cols=63 Identities=33% Similarity=0.651 Sum_probs=57.9
Q ss_pred cEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeE-EEe
Q 012736 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV-LRL 149 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~-~~~ 149 (457)
..++++|+.+..|.+||+-++...|+|+++.+++|+||+|.|+.++..+.+..-+.+|++ +||
T Consensus 14 h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 14 HGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred CceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 347888999999999999999999999999999999999999999999999999999987 454
No 102
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=97.70 E-value=0.0002 Score=61.45 Aligned_cols=76 Identities=30% Similarity=0.517 Sum_probs=60.8
Q ss_pred eeeEEEcCCC----CEEEEEecCCccHHHHHHHHhhhcCCCCCCe-EEEEc-Ceec--CCCCcccccCCCCC----CEEE
Q 012736 381 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQL--EDGRTLADYNIQKE----STLH 448 (457)
Q Consensus 381 ~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~~-g~~L--~d~~tL~~~~i~~~----~~i~ 448 (457)
|+|+|.+.+| .++.+.+++++||.+|+..|.+..++|...| .|++. ++.| .++..+..+.-.+. -+++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 5799999999 5889999999999999999999999999985 45553 5555 35555666654433 4789
Q ss_pred EEEecCCC
Q 012736 449 LVLRLRGG 456 (457)
Q Consensus 449 l~~r~~GG 456 (457)
+..|++||
T Consensus 81 l~~rl~GG 88 (162)
T PF13019_consen 81 LSLRLRGG 88 (162)
T ss_pred EEEeccCC
Confidence 99999998
No 103
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00065 Score=52.84 Aligned_cols=76 Identities=17% Similarity=0.448 Sum_probs=68.0
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~ 304 (457)
+++.|+..++.++.+.|..+.....|...-|++.|++.+..||.|+|+.+.+.+|-++.+..+++.|.++.-+.++
T Consensus 21 i~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG 96 (99)
T KOG1769|consen 21 INLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGG 96 (99)
T ss_pred EEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccC
Confidence 4455777778899999999999999999999999999999999999999999999999999999999887654433
No 104
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.57 E-value=0.00022 Score=51.86 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.4
Q ss_pred ccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736 235 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
..++++.++.+.++.++.++-++.+.++|++++++.|.|+++.++-+.+++.-|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 568899999999999999999999999999999999999999999999999999999998754
No 105
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.36 E-value=0.0003 Score=53.71 Aligned_cols=61 Identities=30% Similarity=0.442 Sum_probs=52.7
Q ss_pred CeEEEEcCCC-cEEEEEecccccHHHHHHHHhhhhCCCCccceEee-cc-EEccCCCccccccc
Q 012736 1 MQIFVKTLTG-KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AG-KQLEDGRTLADYNI 61 (457)
Q Consensus 1 ~~i~~~~~~g-~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~-~g-~~L~~~~tl~~y~i 61 (457)
|++|++.-.- .++.+..++|.||.++|.++..-..=|++.|+|+. +- +.|+|++||.|++.
T Consensus 1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gf 64 (110)
T KOG4495|consen 1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGF 64 (110)
T ss_pred CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhccc
Confidence 6788887554 46779999999999999999999999999999988 33 56899999999965
No 106
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00015 Score=50.99 Aligned_cols=67 Identities=27% Similarity=0.407 Sum_probs=59.5
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
+.+...-|+.+++..++.|||+++|..|....|-.++...|..+.-.+.|.-+|++|.|.+|-.+.|
T Consensus 4 v~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~I~L~dyeihdg~~lel 70 (73)
T KOG3493|consen 4 VVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDHITLSDYEIHDGMNLEL 70 (73)
T ss_pred ehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcccceeeEEeccCccEEE
Confidence 4445556899999999999999999999999999999999988888899999999999999877654
No 107
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=97.20 E-value=0.00092 Score=51.09 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=48.5
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC------eEEE-EcCeecCCCCcccccCCCCCCEEEE
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ------QRLI-FAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~------q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|.|...+|+.+.+.++.+.+|++|...+.+..+.+... -.|. -+|..|.++.||+++||.+|+++.+
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 566666557899999999999999999999998874433 2333 4688999999999999999999986
No 108
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=97.18 E-value=0.0014 Score=47.68 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=47.2
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..+++...+.|.|++++.++-+..+.++|++++.-.|.|+++.|+-+.++...|+.+|+.+.|
T Consensus 3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 457888999999999999999999999999999999999999999999999999999999875
No 109
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0012 Score=65.37 Aligned_cols=69 Identities=25% Similarity=0.444 Sum_probs=62.4
Q ss_pred eeEEEcCCCCEEEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 382 QIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.|.|+ ..|+.+.++ ++.++|+..||+++.+.+|+||++|++.+.|..+.|+--+...+|++|.+|.+..
T Consensus 5 ~v~VK-W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmG 74 (473)
T KOG1872|consen 5 TVIVK-WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMG 74 (473)
T ss_pred eEeee-ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEecccccccccccccccCCCCEEEeec
Confidence 45555 567889888 9999999999999999999999999999999999999889999999999998764
No 110
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.73 E-value=0.011 Score=45.35 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=61.0
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEE--EcCeecCCC--CcccccCCCCCCEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~--~~g~~L~d~--~tL~~~~i~~~~~i~l~ 450 (457)
....|-|+.++|+...-...+++||.+|...|......+... ..|. |-.+.+.++ .||+++|+.+.++|.|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788999999999999999999999999999998877765 7775 556788644 59999999999999874
No 111
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=96.68 E-value=0.0076 Score=51.86 Aligned_cols=75 Identities=29% Similarity=0.505 Sum_probs=54.5
Q ss_pred CeEEEEcCCC----cEEEEEecccccHHHHHHHHhhhhCCCCccc-eEeec-cEEcc--CCCccccccccccc----cee
Q 012736 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFA-GKQLE--DGRTLADYNIQKES----TLH 68 (457)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q-~l~~~-g~~L~--~~~tl~~y~i~~~s----ti~ 68 (457)
|+|||.++.| .++.+.+.++.||.+++..|.+..++|...| .|.+. ++.|. ++..+..+.-...+ +++
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~~~~~~l~ 80 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQDSDFITLR 80 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCCCCceEEE
Confidence 7999999999 6999999999999999999999999998874 45554 55663 34445555433332 445
Q ss_pred EEEEecC
Q 012736 69 LVLRLRG 75 (457)
Q Consensus 69 l~~~~~~ 75 (457)
+..++.+
T Consensus 81 l~~rl~G 87 (162)
T PF13019_consen 81 LSLRLRG 87 (162)
T ss_pred EEEeccC
Confidence 5555443
No 112
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.60 E-value=0.0068 Score=46.26 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=48.7
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCC------CeEEE-eCCcccCCCccccccccCCCCeEEE
Q 012736 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI-FAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~------~q~L~-~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.|+|...+|+.+.+.+..+-+|.+|...+.+..+.+.. ...|. -+|..|+++.||++++|.+|+.+++
T Consensus 4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 45555555789999999999999999999998886332 35666 5788999999999999999999876
No 113
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.33 E-value=0.0081 Score=47.58 Aligned_cols=57 Identities=21% Similarity=0.368 Sum_probs=44.0
Q ss_pred EEEEccCC-cEEEEEEe--CCCCHHHHHHHHhhhhC--CCCCCeEEEecCccccccCccccc
Q 012736 79 IFVKTLTG-KTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 79 i~vk~~~g-~~~~l~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y 135 (457)
|+|++.++ ....+++. ...||..||..|.+..+ ..-.+++|+|+|+.|.|...|+..
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 45565552 34677777 78999999999999873 445668899999999998877764
No 114
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=96.32 E-value=0.029 Score=43.00 Aligned_cols=72 Identities=22% Similarity=0.325 Sum_probs=59.4
Q ss_pred cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCc-eEEE--ECCeecCCC--CCccccCcCcCcEEEEE
Q 012736 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLI--FAGKQLEDG--RTLADYNIQKESTLHLV 222 (457)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~-q~L~--~~g~~L~d~--~tL~~y~i~~~~~i~l~ 222 (457)
....|.|+.++|+.+.-...+++||.+|...|......+... ..|+ |-.+.+.+. .||++.|+.+++++++-
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~ 81 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE 81 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence 346788899999999999999999999999999887766654 7776 556777544 69999999999998763
No 115
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.15 E-value=0.037 Score=42.26 Aligned_cols=72 Identities=21% Similarity=0.228 Sum_probs=58.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l~ 450 (457)
+...|-||.++|+...-..++++||++|.+.|....+.+.....|. |-.+.+.+ +.||.+.|+-..++|.|.
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~ 79 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE 79 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence 3467889999999999999999999999999977677776777775 45667764 469999999988888763
No 116
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.006 Score=54.01 Aligned_cols=62 Identities=29% Similarity=0.446 Sum_probs=56.6
Q ss_pred cCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCccee
Q 012736 84 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 145 (457)
Q Consensus 84 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l 145 (457)
.+++.+.+.+...+||.++|.+++...|+.+..|+++|+|+.|-|...|.+|+|..++...+
T Consensus 154 tT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvl 215 (231)
T KOG0013|consen 154 TTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVL 215 (231)
T ss_pred hhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEE
Confidence 36788999999999999999999999999999999999999999999999999999864333
No 117
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.06 E-value=0.014 Score=46.23 Aligned_cols=50 Identities=24% Similarity=0.373 Sum_probs=39.5
Q ss_pred CceEEeeec--CCchHHHHHHHHhhhhC--CCCCceEEEECCeecCCCCCcccc
Q 012736 162 GKTITLEVE--SSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADY 211 (457)
Q Consensus 162 g~~~~~~v~--~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tL~~y 211 (457)
-..+++++. ...||..||..|.+..+ .....+||||+|+.|.|...|+.-
T Consensus 11 ipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 11 IPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred CCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCccchhhhh
Confidence 345667766 78899999999999984 344568999999999998777653
No 118
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=96.04 E-value=0.035 Score=42.38 Aligned_cols=71 Identities=21% Similarity=0.240 Sum_probs=57.7
Q ss_pred cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecCC---CCCccccCcCcCcEEEE
Q 012736 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (457)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~~~i~l 221 (457)
+...|.|+.++|+.+.-....++||.++.+.+....+.+.....|+ |-.+.+.+ +.||.+.|+.+++++.+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v 78 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVL 78 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEE
Confidence 3457888999999999999999999999999977666666667775 55667753 47999999998888865
No 119
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.92 E-value=0.051 Score=41.40 Aligned_cols=68 Identities=22% Similarity=0.288 Sum_probs=54.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCC-CCCCeEEE--EcCeecCC-CCcccccCCCCCCE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLI--FAGKQLED-GRTLADYNIQKEST 446 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~ 446 (457)
+...|-|+..+|+.....++.++||++|.+-|....+- ....+.|. |-.+.|.| +.||++.|+.+.+.
T Consensus 3 p~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v 74 (79)
T cd01770 3 PTTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVI 74 (79)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEE
Confidence 45678999999999999999999999999999987643 23556665 66788864 67999999986443
No 120
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=95.90 E-value=0.065 Score=40.54 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=53.6
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecCC---CCcccccCCCCCCEEEEE
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~d---~~tL~~~~i~~~~~i~l~ 450 (457)
...|-|+.++|+...-..+.++||.+|.+-|.....- .....|. |-.+.+.+ +.||.+.|+. .+++.+.
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~ 75 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQR 75 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEE
Confidence 4568899999999999999999999999999877543 4556665 44567754 6799999999 5555443
No 121
>COG5417 Uncharacterized small protein [Function unknown]
Probab=95.72 E-value=0.075 Score=38.92 Aligned_cols=67 Identities=18% Similarity=0.245 Sum_probs=55.4
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCC--C---CCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP--P---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip--~---~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
+-++..+|.++.+.++...++..|-..+.+...+. + +..+..-.++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 33456679999999999999999999888877543 2 3457777899999999999999999998865
No 122
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=95.65 E-value=0.02 Score=52.13 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=51.7
Q ss_pred eeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhh-cCCCCCCeEEEE----cCeecCCCCcccccCCCCCCEEEE
Q 012736 381 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDK-EGIPPDQQRLIF----AGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 381 ~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~-~gip~~~q~l~~----~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
|.|++...++ .......+...|+.|++.++.++ ..+.+..+|+.+ .|++|-|+.+|++||..+|.+|++
T Consensus 1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~v 76 (297)
T KOG1639|consen 1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYV 76 (297)
T ss_pred CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEE
Confidence 5567765554 22335667788999999666655 478886676554 699999999999999999987765
No 123
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.028 Score=49.91 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=55.5
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
++.+-+.+..-+|+.++|.++.+..|+.+..|+|+|.|..|.|...|..|+|+.|.--.+-.
T Consensus 156 ~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 156 REDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred hhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 45677888999999999999999999999999999999999999999999999996554443
No 124
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.29 E-value=0.16 Score=39.29 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=57.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC--eecC--------CCCcccccCCCCCCEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE--------DGRTLADYNIQKESTLH 448 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~--------d~~tL~~~~i~~~~~i~ 448 (457)
...+|-|+.++|+...-....++||++|..-|... +-.++...|..+= +.++ .+.||++.|+.+..+|.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~-~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSL-KETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhC-CCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 35678899999999899999999999999999754 5566778887653 6775 25699999999988887
Q ss_pred EE
Q 012736 449 LV 450 (457)
Q Consensus 449 l~ 450 (457)
|.
T Consensus 82 V~ 83 (85)
T cd01774 82 VQ 83 (85)
T ss_pred Ee
Confidence 64
No 125
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.28 E-value=0.13 Score=39.17 Aligned_cols=68 Identities=16% Similarity=0.317 Sum_probs=54.9
Q ss_pred eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecCC---CCCccccCcCcCcEEEE
Q 012736 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHL 221 (457)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~d---~~tL~~y~i~~~~~i~l 221 (457)
..|.|+.++|+.+.-..+.++|+.++.+.|....+-+ ....|+ |-.+.+.+ +.||.+.|+.+.+++.|
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v 77 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIV 77 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEE
Confidence 5678889999999999999999999999998765433 456675 55777853 57999999999888865
No 126
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=95.15 E-value=0.11 Score=39.48 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=55.3
Q ss_pred eeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeeccC---CCcccccccccCceEEEE
Q 012736 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLED---GRTLADYNIQKESTLHLV 374 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d---~~~l~~~~i~~~~~l~l~ 374 (457)
.|.|+..+|..+.-..+.++|+.++.+-+....+-+ ..-.|. |+.+.+.+ +.+|.+.|+.|..+|.+.
T Consensus 6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~ 78 (79)
T cd01772 6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT 78 (79)
T ss_pred EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence 578899999999999999999999999999765543 323444 78888753 589999999999988874
No 127
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.99 E-value=0.2 Score=46.11 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=59.1
Q ss_pred cEEEEEeeCCCcHHHHHHHhhcccCCCCC-CceEE----ecCe---eccCCCcccccccccCceEEEEEEec--------
Q 012736 315 KTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI----FAGK---QLEDGRTLADYNIQKESTLHLVLRLR-------- 378 (457)
Q Consensus 315 ~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-~q~l~----~~g~---~L~d~~~l~~~~i~~~~~l~l~~~~~-------- 378 (457)
+.+.+.++.+.||.||-..++++.+++.. .++|. ++++ .++.+..+..+ .....+++..-..
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 46789999999999999999999999776 34443 3443 46778878777 2222444432111
Q ss_pred --CceeeEEEcC-------CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCe
Q 012736 379 --GGMQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 421 (457)
Q Consensus 379 --~~~~i~v~~~-------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q 421 (457)
..+-|.|... -|-.|.+.|.+++|++++|.+|++++|++...+
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~keF 163 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDKEF 163 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HHHH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChhhh
Confidence 1233444321 255788899999999999999999999986544
No 128
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.95 E-value=0.25 Score=37.68 Aligned_cols=73 Identities=16% Similarity=0.305 Sum_probs=60.9
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~r 452 (457)
+..+|.|+.++|+...-....++++++|-..+.. .|.+++...|+ |--+.+. .+.||.+.|+.+..+|.|.-|
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r 81 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER 81 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence 4568999999999999999999999999999999 57788888876 3345553 346999999999999988654
No 129
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=94.93 E-value=0.15 Score=38.55 Aligned_cols=68 Identities=15% Similarity=0.245 Sum_probs=51.9
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~l~l~ 374 (457)
..|.|+..+|..+.-..+.++|+++|.+-|.....- ...-.|. |..+.+. .+.+|.+.|+.+ +.+.+.
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~-s~~~~~ 75 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLVN-EVVFQR 75 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCcc-ceEEEE
Confidence 357889999999999999999999999999876543 2333444 6777774 589999999984 554443
No 130
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.64 E-value=0.29 Score=37.29 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=59.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~r 452 (457)
+..+|-|+.++|+...-....++++++|..-|... |.+++...|. |--+.+. .+.||.+.|+....+|.|--|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Veer 80 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEER 80 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEcC
Confidence 45678899999999999999999999999999875 7788888876 3455663 346999999999999987543
No 131
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.55 E-value=0.21 Score=37.96 Aligned_cols=68 Identities=22% Similarity=0.285 Sum_probs=53.0
Q ss_pred ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCC-CCceEEE--ECCeecCC-CCCccccCcCcCcEE
Q 012736 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (457)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip-~~~q~L~--~~g~~L~d-~~tL~~y~i~~~~~i 219 (457)
...|.|+.++|+.+.-..+.++||.+|.+.|....+-+ .....|. |-.+.|.| +.||.+.|+.+...+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s~v~ 75 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLNAVIV 75 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcCcEEE
Confidence 45788899999999999999999999999998765432 2446665 56777744 789999999865443
No 132
>PRK06437 hypothetical protein; Provisional
Probab=94.55 E-value=0.31 Score=35.75 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=47.9
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++...++++.+.||++|-+. .|+++....+..||..+. .++-+++|+.|.+.--.-||
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~GG 67 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSGG 67 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccCC
Confidence 345577888999999998765 488999999999999997 55567789999988777776
No 133
>COG5417 Uncharacterized small protein [Function unknown]
Probab=94.50 E-value=0.2 Score=36.78 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=55.1
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcCC--CC---CCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI--PP---DQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~i--p~---~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
|-.+..+|.++.+.+....++..+...+.+.+.+ ++ ++.+.+-.++.|.++..|.+|+|.+|+.+.+
T Consensus 9 vD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 9 VDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred EEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 3345678999999999999999999988887764 22 2456777899999999999999999998754
No 134
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.43 E-value=0.29 Score=37.84 Aligned_cols=70 Identities=11% Similarity=0.182 Sum_probs=56.0
Q ss_pred cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEEC--CeecC--------CCCCccccCcCcCcEEE
Q 012736 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE--------DGRTLADYNIQKESTLH 220 (457)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~--g~~L~--------d~~tL~~y~i~~~~~i~ 220 (457)
+.+.|.++.++|+.+.-....++||++|...|.. .+..++.+.|+.+ .+.+. .+.||.+.|+.+..++.
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~ 81 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLF 81 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEE
Confidence 3567889999999999999999999999999964 4455577888754 46774 36799999999887775
Q ss_pred E
Q 012736 221 L 221 (457)
Q Consensus 221 l 221 (457)
+
T Consensus 82 V 82 (85)
T cd01774 82 V 82 (85)
T ss_pred E
Confidence 4
No 135
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.19 Score=38.30 Aligned_cols=69 Identities=14% Similarity=0.366 Sum_probs=62.1
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
++..|...+|.++-+.+....+...|-..-+.+.|=.-+..|++|+|+..+.++|-.+.+..+++.|..
T Consensus 25 inLkvv~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEa 93 (103)
T COG5227 25 INLKVVDQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEA 93 (103)
T ss_pred cceEEecCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHH
Confidence 455566788999999999999999999999999999999999999999999999999999998887644
No 136
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=94.16 E-value=0.38 Score=36.49 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=42.2
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.+...++-...+..||..++.+.+++.+.+.+...+..|+++++|.+.|++-+.++.+.
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQln 62 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLN 62 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEE
Confidence 34556677789999999999999999999999999988999999999999988887663
No 137
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=94.15 E-value=0.39 Score=44.14 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=57.9
Q ss_pred ceEEeeecCCchHHHHHHHHhhhhCCCCC---ceEE--EECCee---cCCCCCccccCcCcCcEEEEEEEec--------
Q 012736 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD---QQRL--IFAGKQ---LEDGRTLADYNIQKESTLHLVLRLR-------- 226 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~---~q~L--~~~g~~---L~d~~tL~~y~i~~~~~i~l~~~~~-------- 226 (457)
+.+.+.|+.+.||.+|.++++.+.+++.+ ..|+ +++++. +..+.++.+. .+...+.+-.-+.
T Consensus 34 ~~~~~~vpk~~tV~Dll~~l~~k~~~~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l--~~~~~~r~E~ip~ee~~~~~~ 111 (213)
T PF14533_consen 34 QEYELLVPKTGTVSDLLEELQKKVGFSEEGTGKLRLWEVSNHKIYKILSEDEPISSL--NDYITLRIEEIPEEELNLDDE 111 (213)
T ss_dssp -EEEE--BTT-BHHHHHHHHHTT----TT----EEEEEEETTEEEEEE-TTSBGGGS----TTEEEEEE--GGGSS--TT
T ss_pred eEEEEEECCCCCHHHHHHHHHHHcCCCcCCcCcEEEEEeECCEEEeecCCCCchhhc--cCcceeeeecCChHHhhcccc
Confidence 45788899999999999999999998765 3444 356654 5667777665 3333333321111
Q ss_pred --CCeeEEEEc-------cCCceEEEEeecCccHHHHHHHHhhhcCCCCC
Q 012736 227 --GGMQIFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 267 (457)
Q Consensus 227 --~~~~i~v~~-------~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~ 267 (457)
+...|.|.- ..|-.+.+.|.++.|+.++|++|++++|++..
T Consensus 112 ~~~~~li~V~hf~k~~~~~hGiPF~f~v~~gE~f~~tK~Rl~~rlgv~~k 161 (213)
T PF14533_consen 112 SEGEKLIPVFHFHKDPSRTHGIPFLFVVKPGETFSDTKERLQKRLGVSDK 161 (213)
T ss_dssp --TEEEEEEEEESSSTT-EEEEEEEEEEETT--HHHHHHHHHHHH---HH
T ss_pred cccceEEEEEEEecCccccCCCCEEEEeeCCCcHHHHHHHHHHHhCCChh
Confidence 112233322 23778889999999999999999999998654
No 138
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.85 E-value=0.41 Score=36.57 Aligned_cols=70 Identities=16% Similarity=0.320 Sum_probs=59.4
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~ 375 (457)
-.|.|+..+|+...-..+..+|+.+|-.-+.. .|.+++...|+ |.-+.+ +.+.+|.+.|+.+..+|.+..
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~ 80 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 80 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEec
Confidence 36889999999999999999999999999998 46787877777 777766 445899999999999988764
No 139
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.22 Score=44.31 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=48.8
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-EcC-----eecC-CCCcccccCCCCCCEEEEE
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQLE-DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g-----~~L~-d~~tL~~~~i~~~~~i~l~ 450 (457)
..-+.+++.||++||.+++-.+|.+++.+.|. |.| -.|. ++..|..|+..+|..||+.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihvi 79 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVI 79 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEE
Confidence 45567899999999999999999999999885 444 2565 5568999999999999875
No 140
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=93.48 E-value=0.44 Score=36.32 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=57.6
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~ 374 (457)
..|.++..+|..+.-..+.++|+++|-.-+..+ |.++..-.|+ |.-+.+ +.+.+|.+.|+.+..+|.+.
T Consensus 5 ~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Ve 78 (80)
T cd01771 5 SKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILE 78 (80)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEE
Confidence 467889999999999999999999999999875 6666666776 777776 34679999999998888774
No 141
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.60 E-value=1.2 Score=32.91 Aligned_cols=66 Identities=12% Similarity=0.195 Sum_probs=50.2
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|.+.... ....++++++.||.+|-+.+ ++++..-.+..||..+.. +.-+++|+.|.+.-..-||
T Consensus 5 m~v~vng~~-~~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~-----~~~l~~gD~Veii~~V~GG 70 (70)
T PRK08364 5 IRVKVIGRG-IEKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE-----DDPVKDGDYVEVIPVVSGG 70 (70)
T ss_pred EEEEEeccc-cceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC-----CcCcCCCCEEEEEccccCC
Confidence 566665332 25678889999999998776 777877888899999854 5557789999998877776
No 142
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.41 E-value=0.97 Score=42.61 Aligned_cols=107 Identities=17% Similarity=0.342 Sum_probs=73.9
Q ss_pred EEeeCCCcHHHHHHHhhcccCCCCCCceEEecC------eeccCCCcccccccccCceEEEEEEecC-------------
Q 012736 319 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLEDGRTLADYNIQKESTLHLVLRLRG------------- 379 (457)
Q Consensus 319 l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g------~~L~d~~~l~~~~i~~~~~l~l~~~~~~------------- 379 (457)
+.|+.+++|.++-..|.++.|+|++..-.+|.. ..++.+.++....+..|+.|-+......
T Consensus 89 ~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~ 168 (249)
T PF12436_consen 89 VYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKE 168 (249)
T ss_dssp EEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHH
T ss_pred EEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHH
Confidence 678999999999999999999999976666532 2468999999999999999998864321
Q ss_pred -------ceeeEEEc---CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE
Q 012736 380 -------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 380 -------~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
.+.|.++. ..+..+++.++..+|-.+|-++|++..|++|+..+++-
T Consensus 169 Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 169 YYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp HHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred HHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 14555543 33457999999999999999999999999999998863
No 143
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=92.21 E-value=0.62 Score=35.21 Aligned_cols=60 Identities=13% Similarity=0.243 Sum_probs=47.6
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCC----CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...++++.+.||.+|.+.+....+- ......+..||+... .+.-+++|+.|.+.-...||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~GG 80 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVSGG 80 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCCCC
Confidence 3567788899999999999987642 344567788999887 34557889999999999888
No 144
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=92.12 E-value=1.1 Score=42.15 Aligned_cols=122 Identities=17% Similarity=0.362 Sum_probs=78.4
Q ss_pred ceeeeEeecc--CceE----EeeecCCchHHHHHHHHhhhhCCCCCceEEEEC----C--eecCCCCCccccCcCcCcEE
Q 012736 152 GMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G--KQLEDGRTLADYNIQKESTL 219 (457)
Q Consensus 152 ~~~i~v~~~~--g~~~----~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g--~~L~d~~tL~~y~i~~~~~i 219 (457)
.+.|++|-.+ .+++ .+.|+..++|.++-..|.+..|+|++...++|. + ..++...|+....+.+|+.|
T Consensus 68 ~iLlFlK~fDp~~q~L~~iGh~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi 147 (249)
T PF12436_consen 68 DILLFLKYFDPETQTLRYIGHVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDII 147 (249)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEE
T ss_pred cEEEEEEeeCCCCCEEEEEeEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEE
Confidence 3455666543 2332 356889999999999999999999988777764 2 44688899999999999999
Q ss_pred EEEEEecC--------------------CeeEEEEc---cCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEe
Q 012736 220 HLVLRLRG--------------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (457)
Q Consensus 220 ~l~~~~~~--------------------~~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~ 273 (457)
.+-..... .+.|.+.. ..+..+++.+....|-.+|-+.|.++.+++|..-+|.-
T Consensus 148 ~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~~ 224 (249)
T PF12436_consen 148 CFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKDNPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFFT 224 (249)
T ss_dssp EEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETTSTT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE-
T ss_pred EEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEE
Confidence 76554321 13333333 33458999999999999999999999999999888774
No 145
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=92.00 E-value=0.27 Score=37.05 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=47.1
Q ss_pred ecCCccHHHHHHHHhhhcC-CCCCCeEEEEcCeecCCCCccccc-CCCCCCEEEEEEe
Q 012736 397 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLR 452 (457)
Q Consensus 397 v~~~~tV~~lK~~i~~~~g-ip~~~q~l~~~g~~L~d~~tL~~~-~i~~~~~i~l~~r 452 (457)
|+++++|.|++..+..... ..-.+..|.++|+.|++...|++. |+++|++|.++..
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~ 58 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEE 58 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEec
Confidence 5789999999999998864 566777899999999988888776 5888999988754
No 146
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=91.58 E-value=1.1 Score=33.83 Aligned_cols=68 Identities=25% Similarity=0.352 Sum_probs=50.4
Q ss_pred EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEE----cC--eecCCCCcccccCCCCCCEEEEEEe
Q 012736 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF----AG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~----~g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|..++|...+++|++++|+.+|-..|++..|+... .+-|.+ +| .-|+.+++|.++.........+.+|
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~fr 75 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFR 75 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEE
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEE
Confidence 45688989999999999999999999999998643 346777 22 2467888999998873444444433
No 147
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=91.51 E-value=0.69 Score=35.10 Aligned_cols=61 Identities=20% Similarity=0.328 Sum_probs=44.7
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+...++-..++..||..++.+.++..+.-.+......|+++++|-+-+|+-.-++.+++-
T Consensus 4 vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQ 64 (88)
T PF11620_consen 4 VIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQ 64 (88)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEE
T ss_pred eEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEE
Confidence 3455678889999999999999999999999988998899999999999998888888764
No 148
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=91.47 E-value=1.1 Score=32.51 Aligned_cols=65 Identities=18% Similarity=0.398 Sum_probs=46.2
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|.+ +|+.+.+ + ..|+.+|...+ ++++....+-.|+..+.. ..-++.-+++||.|.+.-..-||
T Consensus 1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~-~~~~~~~L~dgD~Ieiv~~V~GG 65 (65)
T PRK06488 1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK-EARAQFVLHEGDRIEILSPMQGG 65 (65)
T ss_pred CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH-HHcCccccCCCCEEEEEEeccCC
Confidence 44544 4655555 3 46999998765 677766677888888863 23456667889999999888887
No 149
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=90.76 E-value=1.4 Score=33.26 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=46.1
Q ss_pred EEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEe----CCc--ccCCCccccccccC
Q 012736 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF----AGK--QLEDGRTLADYNIQ 290 (457)
Q Consensus 233 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~----~g~--~L~d~~tl~~~~i~ 290 (457)
|..++|.+.+++++++.|+.+|-++|+++.||...+ .-|.+ +|. =|+.++++..+...
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~ 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKK 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBT
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCC
Confidence 456889999999999999999999999999986554 55767 121 26888899998777
No 150
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=90.26 E-value=0.58 Score=35.29 Aligned_cols=57 Identities=23% Similarity=0.312 Sum_probs=45.7
Q ss_pred ecCCchHHHHHHHHhhhhC-CCCCceEEEECCeecCCCCCcccc-CcCcCcEEEEEEEe
Q 012736 169 VESSDTIDNVKAKIQDKEG-IPPDQQRLIFAGKQLEDGRTLADY-NIQKESTLHLVLRL 225 (457)
Q Consensus 169 v~~~~tV~~lK~~i~~~~g-ip~~~q~L~~~g~~L~d~~tL~~y-~i~~~~~i~l~~~~ 225 (457)
|.+.++|.+++..+..... ..-....|.++|..|++...+++. |+.+++++.++..+
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDFVELSEIEGIKDGCVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCchhhhhhhCCCCCcEEEEEecC
Confidence 5688999999999987643 445567889999999999888887 58888888877554
No 151
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=90.24 E-value=1.1 Score=34.09 Aligned_cols=61 Identities=16% Similarity=0.255 Sum_probs=43.8
Q ss_pred CEEEEEecCCccHHHHHHHHhhhc-CCCC--CCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKE-GIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~-gip~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
....++++.+.|+++|+..+.... ++.. ....+..||+...++ .-+++|+.|.+.-...||
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~-----~~l~dgDeVai~PpvsGG 82 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES-----AALKDGDELAIIPPISGG 82 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC-----cCcCCCCEEEEeCCCCCC
Confidence 456788888999999999997765 1111 122466788876533 446779999999888887
No 152
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=90.14 E-value=0.91 Score=34.98 Aligned_cols=43 Identities=14% Similarity=0.286 Sum_probs=37.7
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC---CCeEEEE
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIF 425 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---~~q~l~~ 425 (457)
..+++++|+++-+.+.|+..+.+|++.|+++.|+.. ....|.|
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y 48 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY 48 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence 356788999999999999999999999999999997 4666666
No 153
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=89.61 E-value=0.49 Score=43.39 Aligned_cols=69 Identities=26% Similarity=0.346 Sum_probs=49.4
Q ss_pred eeEEEecCC-cEEE-EEeeCCCcHHHHHHHhh-cccCCCCCCceEE----ecCeeccCCCcccccccccCceEEEE
Q 012736 306 QIFVKTLTG-KTIT-LEVESSDTIDNVKAKIQ-DKEGIPPDQQRLI----FAGKQLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 306 ~i~i~~~~g-~~~~-l~v~~~~Tv~~lK~~I~-~~~~ip~~~q~l~----~~g~~L~d~~~l~~~~i~~~~~l~l~ 374 (457)
.|++..-.+ ..++ ...+.+.|+.|+++.|. +...+-+.++++. -+|..|-|+.+|++|+..++.++++.
T Consensus 2 ~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i~vK 77 (297)
T KOG1639|consen 2 EITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATIYVK 77 (297)
T ss_pred ceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccchhHHHHhccCCCCEEEEe
Confidence 344433332 3444 66788999999996655 5566777555544 57888999999999999999888875
No 154
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=89.16 E-value=0.12 Score=49.29 Aligned_cols=57 Identities=21% Similarity=0.454 Sum_probs=0.0
Q ss_pred CccHHHHHHHHhh----------hcCCCCCCeE-----EEEcCeecCCCCcccccCCC-------CCCEEEEEEecCCC
Q 012736 400 SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYNIQ-------KESTLHLVLRLRGG 456 (457)
Q Consensus 400 ~~tV~~lK~~i~~----------~~gip~~~q~-----l~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~r~~GG 456 (457)
+++|.++|..++. .+++|.+..+ |.|+-+++.|++||.+..-. .+.++.+.+-..||
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 6899999999999 8999999999 99999999999998887554 47788888888887
No 155
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=88.91 E-value=1.7 Score=32.92 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=34.6
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~ 428 (457)
++.+.|+++.+..+|..+|.++.++|+++..|.|...
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 7999999999999999999999999999999999544
No 156
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=88.61 E-value=1.2 Score=34.24 Aligned_cols=44 Identities=14% Similarity=0.280 Sum_probs=38.1
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCC---CCeEEEeC
Q 012736 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLIFA 274 (457)
Q Consensus 231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~~~ 274 (457)
...+.+.|+++++.+.++..+.+|++.|.+++|+.. ....|.|-
T Consensus 3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Yl 49 (86)
T cd06409 3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYV 49 (86)
T ss_pred EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEE
Confidence 346788999999999999999999999999999876 46777773
No 157
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=88.22 E-value=3 Score=30.20 Aligned_cols=58 Identities=17% Similarity=0.345 Sum_probs=43.5
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++++.+.|+.++-.. .++++....+..+|..+..+. -.+.-+++|+.|.+..-.-||
T Consensus 9 ~~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r~~-~~~~~l~~gD~vei~~~vgGG 66 (66)
T PRK05659 9 PRELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPRSQ-HASTALREGDVVEIVHALGGG 66 (66)
T ss_pred EEEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCHHH-cCcccCCCCCEEEEEEEecCC
Confidence 4567788899988765 588898888999998776332 233346789999998887776
No 158
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=88.02 E-value=4.3 Score=29.26 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=40.4
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++++++.|+++|...+. ++ ....+..+|..+..+. -.+.-+++||.|.+.-...||
T Consensus 9 ~~~~~~~~tl~~ll~~l~----~~-~~~~v~vN~~~v~~~~-~~~~~L~~gD~vei~~~v~GG 65 (65)
T PRK06944 9 TLSLPDGATVADALAAYG----AR-PPFAVAVNGDFVARTQ-HAARALAAGDRLDLVQPVAGG 65 (65)
T ss_pred EEECCCCCcHHHHHHhhC----CC-CCeEEEECCEEcCchh-cccccCCCCCEEEEEeeccCC
Confidence 456778899999988763 33 2456778888875321 223337789999999888887
No 159
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=87.89 E-value=3 Score=29.38 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=41.4
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+|++. | ..+++..+.|+.+||..+.. +.=.++++|-+..++..|. +||.|.+.-
T Consensus 1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~~~~d~~L~-----e~D~v~~Ik 55 (57)
T PF14453_consen 1 MKIKVN---E--KEIETEENTTLFELRKESKP------DADIVILNGFPTKEDIELK-----EGDEVFLIK 55 (57)
T ss_pred CEEEEC---C--EEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcccCCccccC-----CCCEEEEEe
Confidence 556655 3 56788999999999999765 3338899999998876655 578887654
No 160
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=87.59 E-value=1.5 Score=32.67 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=40.3
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g 47 (457)
+.|-.+||++-.+.|.|+.||.++=+++-++.|+.++.-.+++.|
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 567789999999999999999999999999999999887777654
No 161
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=87.23 E-value=0.29 Score=46.72 Aligned_cols=72 Identities=26% Similarity=0.380 Sum_probs=53.3
Q ss_pred cEEEEEEccCC--cEEEEEEeCCCCHHHHHHHHhhhhC--CCCCCeEEEecCccccccCcccccccc--cCCcceeEE
Q 012736 76 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG--IPPDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVL 147 (457)
Q Consensus 76 ~~~i~vk~~~g--~~~~l~v~~~~tV~~lK~~i~~~~g--ip~~~q~L~~~g~~L~d~~tl~~y~i~--~~s~i~l~~ 147 (457)
+..++||..+. +...|..+...||++||..++.... --+.+|||+|.||.|.|...+++.-++ ...+.||+.
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvc 86 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVC 86 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhc
Confidence 45667777664 4577788889999999999887653 224579999999999999999987543 334555554
No 162
>smart00455 RBD Raf-like Ras-binding domain.
Probab=86.94 E-value=1.7 Score=32.11 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=39.7
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g 47 (457)
..|-.++|++..+.+.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 456789999999999999999999999999999998876676654
No 163
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=86.91 E-value=1.8 Score=32.21 Aligned_cols=44 Identities=23% Similarity=0.330 Sum_probs=39.0
Q ss_pred EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
.|-.++|+...+.|.|++|+.|+-+++.++.|+.++.-.++..|
T Consensus 3 ~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~ 46 (72)
T cd01760 3 RVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLG 46 (72)
T ss_pred EEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEec
Confidence 45567899999999999999999999999999999988877653
No 164
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=86.90 E-value=3.5 Score=29.88 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=43.2
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..+++++.|+.+|-.. .++++...-+.+++..+..+. .+.+ +++||.|.+..-.-||
T Consensus 9 ~~~~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r~~-~~~~-L~~gD~ieIv~~VgGG 65 (65)
T PRK05863 9 QVEVDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPRSD-WATK-LRDGARLEVVTAVQGG 65 (65)
T ss_pred EEEcCCCCcHHHHHHH----cCCCCCcEEEEECCcCcChhH-hhhh-cCCCCEEEEEeeccCC
Confidence 3455678898887665 588999999999999876432 1235 8999999998877776
No 165
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=86.41 E-value=6 Score=28.74 Aligned_cols=66 Identities=15% Similarity=0.259 Sum_probs=46.3
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|. |+ .+++..+.|+.+|...+ +.+.....+-.|+..+..+ .-+..-+++||.|.+.-..-||
T Consensus 1 m~i~vN---g~--~~~~~~~~tl~~ll~~l----~~~~~~vaVavN~~iv~r~-~w~~~~L~~gD~Ieii~~v~GG 66 (66)
T PRK08053 1 MQILFN---DQ--PMQCAAGQTVHELLEQL----NQLQPGAALAINQQIIPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_pred CEEEEC---Ce--EEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEeChH-HcCccccCCCCEEEEEEEccCC
Confidence 445444 53 45567788999988763 5566667888899988622 2334457889999999888887
No 166
>smart00455 RBD Raf-like Ras-binding domain.
Probab=86.33 E-value=2.2 Score=31.57 Aligned_cols=48 Identities=23% Similarity=0.336 Sum_probs=41.5
Q ss_pred EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC--eecC
Q 012736 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 431 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~ 431 (457)
.+-.++|+...+.+.|+.|+.|+-..+.++.|+.++.-.++..| ++|+
T Consensus 3 ~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~ld 52 (70)
T smart00455 3 KVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPLD 52 (70)
T ss_pred EEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccee
Confidence 34567899999999999999999999999999999999888844 4555
No 167
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=86.18 E-value=4.5 Score=30.57 Aligned_cols=59 Identities=17% Similarity=0.299 Sum_probs=45.5
Q ss_pred EEEEecCC-ccHHHHHHHHhhhcC-C-C-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 393 ITLEVESS-DTIDNVKAKIQDKEG-I-P-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~-~tV~~lK~~i~~~~g-i-p-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..++++.+ .||.+|+..+.++.+ + . .....+..|++...+ +.-+++|+.|.+.-+..||
T Consensus 18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~PpvsGG 80 (80)
T TIGR01682 18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVSGG 80 (80)
T ss_pred EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCCCC
Confidence 47788876 899999999999874 1 1 133467778888775 4567789999999988888
No 168
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=85.78 E-value=4.1 Score=29.38 Aligned_cols=58 Identities=19% Similarity=0.363 Sum_probs=44.1
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++++.+.|+.+|...+ ++++....+..||+.+..+ .-.++-+++||.|.+.-..-||
T Consensus 7 ~~~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V~GG 64 (64)
T TIGR01683 7 PVEVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFVGGG 64 (64)
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEeccCC
Confidence 45567788999998865 5778888888999988532 2334568889999998888887
No 169
>PRK07440 hypothetical protein; Provisional
Probab=85.50 E-value=6.5 Score=29.00 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=49.8
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.|+|.+. |+ ..++..+.||.+|-. ..++++...-+-.||..+.-+ .-++.-+++||.|.+..-.-||
T Consensus 4 ~m~i~vN---G~--~~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~-~w~~~~L~~gD~IEIv~~v~GG 70 (70)
T PRK07440 4 PITLQVN---GE--TRTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQ-FWEQTQVQPGDRLEIVTIVGGG 70 (70)
T ss_pred ceEEEEC---CE--EEEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 4666655 54 366678899998875 457888888899999988632 2445557889999998888777
No 170
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=85.46 E-value=3.8 Score=29.61 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=45.2
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..++++.+.|+.+|...+ ++++....+..+|+.+..+. -.+.-+++||.|.+.-...||
T Consensus 7 ~~~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~~-~~~~~L~~gD~V~ii~~v~GG 65 (65)
T cd00565 7 EPREVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRSE-WASTPLQDGDRIEIVTAVGGG 65 (65)
T ss_pred eEEEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHHH-cCceecCCCCEEEEEEeccCC
Confidence 345667789999998876 47788888899999886541 223447889999999888887
No 171
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=85.13 E-value=4 Score=31.38 Aligned_cols=67 Identities=12% Similarity=0.237 Sum_probs=49.7
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.|+|+|. |+ ..+++.+.||.+|-.. .++++...-+-.||..+.. ..-+.+-+++||.|.+..-.-||
T Consensus 18 ~m~I~VN---G~--~~~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr-~~w~~t~L~egD~IEIv~~VgGG 84 (84)
T PRK06083 18 LITISIN---DQ--SIQVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR-SEWQSTVLSSGDAISLFQAIAGG 84 (84)
T ss_pred eEEEEEC---Ce--EEEcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH-HHcCcccCCCCCEEEEEEEecCC
Confidence 4555554 54 4556778899988775 4788888888899999853 34556668889999998887777
No 172
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=84.65 E-value=3.9 Score=30.43 Aligned_cols=63 Identities=14% Similarity=0.249 Sum_probs=50.8
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCC--CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...+.+....||.+|.+.+.....- ......+..||+...+ .-.+.-+++|+.|.+.-..-||
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvsGG 77 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVSGG 77 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTSTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCCCC
Confidence 5778889999999999999888631 2367788899999988 2445556789999999888887
No 173
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=84.58 E-value=8.2 Score=29.85 Aligned_cols=65 Identities=20% Similarity=0.225 Sum_probs=44.3
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-E---cCe-ecC-CCCcccccCCCCCCEEEEEEecCCC
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F---AGK-QLE-DGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~---~g~-~L~-d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..++..++..+||..+...+.+.+.| ...-||- + ++. .|. .+.|+.+.|+.+|-+|-+-.|-.=|
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DG 84 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNEDG 84 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TTS
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccCC
Confidence 36778899999999999999999999 5556663 2 222 454 4469999999999999888775433
No 174
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=84.34 E-value=3.8 Score=31.01 Aligned_cols=44 Identities=18% Similarity=0.265 Sum_probs=37.1
Q ss_pred EEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCc
Q 012736 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 124 (457)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~ 124 (457)
|.|... + ++.|.|++..+..+|.++|.++.++|++...|.|...
T Consensus 5 vKV~f~-~-tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde 48 (80)
T cd06406 5 VKVHFK-Y-TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSE 48 (80)
T ss_pred EEEEEE-E-EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccC
Confidence 444433 3 8999999999999999999999999999989988743
No 175
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=84.03 E-value=3.9 Score=30.86 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=37.9
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
.+.++. .|.++.+.++++.|..+|+.+|+.+.+++.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 344554 567899999999999999999999999998888888863
No 176
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=83.54 E-value=9 Score=29.44 Aligned_cols=61 Identities=11% Similarity=0.264 Sum_probs=45.6
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCC-----------CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGI-----------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi-----------p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...++++ +.||.+|.+.+.+...- .-....+..||+...++.. .-+++|+.|.+.-+..||
T Consensus 17 ~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsGG 88 (88)
T TIGR01687 17 SEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSGG 88 (88)
T ss_pred eEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcCC
Confidence 4567776 89999999999988631 0123567778888865432 567889999999999988
No 177
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=83.21 E-value=3.1 Score=30.97 Aligned_cols=50 Identities=8% Similarity=0.139 Sum_probs=41.2
Q ss_pred EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCC
Q 012736 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 281 (457)
Q Consensus 232 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~ 281 (457)
.|-.++|+..++.+.+++|+.++=+.++++.++.|..+.|-..-..++|.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk~~~~e~~ 52 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLKFLRMENH 52 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEEEEEecCCc
Confidence 35568899999999999999999999999999999987776544444443
No 178
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=0.55 Score=44.91 Aligned_cols=74 Identities=27% Similarity=0.408 Sum_probs=53.8
Q ss_pred ceeeeEeeccC--ceEEeeecCCchHHHHHHHHhhhhC-CC-CCceEEEECCeecCCCCCccccCcC--cCcEEEEEEEe
Q 012736 152 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEG-IP-PDQQRLIFAGKQLEDGRTLADYNIQ--KESTLHLVLRL 225 (457)
Q Consensus 152 ~~~i~v~~~~g--~~~~~~v~~~~tV~~lK~~i~~~~g-ip-~~~q~L~~~g~~L~d~~tL~~y~i~--~~~~i~l~~~~ 225 (457)
.+.+.+|..+. +.+.+..+...||++||..++...- =| ..+|||+|.||.|.|...+.|.=.+ ...+.|++...
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcns 88 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNS 88 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCC
Confidence 34566776654 5678888899999999999987653 22 3569999999999999888876443 33455666543
No 179
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=82.48 E-value=3.4 Score=31.62 Aligned_cols=42 Identities=12% Similarity=0.154 Sum_probs=35.3
Q ss_pred cCCceEEEEeecCccHHHHHHHHhhhcCCCC-CCeEEEeCCcc
Q 012736 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ 277 (457)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~~~g~~ 277 (457)
.+|..+.+.+.++.+..+|+++|.+++++.. ....|.|....
T Consensus 7 ~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 7 YGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 5678899999999999999999999999865 56777776554
No 180
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=82.43 E-value=10 Score=34.13 Aligned_cols=74 Identities=27% Similarity=0.363 Sum_probs=53.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEEEc---C---eecCCCCcccccCCC-CCCEEEEEE
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G---KQLEDGRTLADYNIQ-KESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~---g---~~L~d~~tL~~~~i~-~~~~i~l~~ 451 (457)
++.+.|..++|....+.+++++|+.++...++.+.|++... +-|.+- + ..++...+|.+.... ....+++..
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~fr~ 82 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVKSEPLTLYFRV 82 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCCCCCcEEEEEE
Confidence 45677888899999999999999999999999999996422 233331 1 346667777777665 345555555
Q ss_pred ec
Q 012736 452 RL 453 (457)
Q Consensus 452 r~ 453 (457)
|.
T Consensus 83 r~ 84 (207)
T smart00295 83 KF 84 (207)
T ss_pred EE
Confidence 53
No 181
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=82.32 E-value=3 Score=37.29 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=49.7
Q ss_pred EEEEeeCCCcHHHHHHHhhcccCCCCCCceEE-ecC-----eec-cCCCcccccccccCceEEEEEE
Q 012736 317 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAG-----KQL-EDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 317 ~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~~g-----~~L-~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
..-+.+++.|+.++|.+++-.+|.+++.+.|. |.| ..| +++..|..|+...+-.||++-.
T Consensus 15 ~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~ 81 (234)
T KOG3206|consen 15 TEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS 81 (234)
T ss_pred hhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence 34667899999999999999999999999988 433 345 6678899999999999998743
No 182
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=82.30 E-value=5 Score=29.71 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=35.7
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 47 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g 47 (457)
+.|-.++|++-.+.|.|+.||.++=+++-++.|+.++.=.++..|
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~ 47 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG 47 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 567789999999999999999999999999999998874554434
No 183
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=2.5 Score=44.59 Aligned_cols=182 Identities=18% Similarity=0.190 Sum_probs=103.3
Q ss_pred eEEeeecCCchHHHHHHHHhhhhCCCCCceEEEE----CCeec--CCCCCccccCcCcCcEEEEEE--Eec-CCeeEEEE
Q 012736 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF----AGKQL--EDGRTLADYNIQKESTLHLVL--RLR-GGMQIFVK 234 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~----~g~~L--~d~~tL~~y~i~~~~~i~l~~--~~~-~~~~i~v~ 234 (457)
.+.+.|+...+++.+|++|++..+++.+..++.. +|..+ .++.||..+ .++.+|.+-+ .+. +...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 4678899999999999999999999999988752 23333 456677654 4455554332 221 22222222
Q ss_pred cc---CCc------eEEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736 235 TL---TGK------TITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~---~g~------~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
.. ..+ -+...+..+.|+++.|..+-.++. +.....|+...++. ..++-+.++++-.++.=+.
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~-~Pg~~~lD~~~~~eD~~~~ 1034 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGV-GPGRAVLDPNDTLEDRSYN 1034 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCc-CCceEecCcchhhhhhhhh
Confidence 11 111 234567899999999887665443 34444444444332 2333444443332221100
Q ss_pred EE---------------eecCceeeEEEecCCcE-----EEEEeeCCCcHHHHHHHhhcccCCCCCCceEE
Q 012736 298 VL---------------RLRGGMQIFVKTLTGKT-----ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 348 (457)
Q Consensus 298 ~~---------------~~~~~~~i~i~~~~g~~-----~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~ 348 (457)
.. +.-...+|+++-|.--+ |.=.+-+...+.+|+..+.+-.|||.++-.++
T Consensus 1035 ~~~~~~~qE~~deV~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~ 1105 (1203)
T KOG4598|consen 1035 WCSHLYLQEITDEVMIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAIT 1105 (1203)
T ss_pred hHHHHHHHHHHhhcccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhh
Confidence 00 11122356666554321 22122356678999999999999999975544
No 184
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=79.92 E-value=2 Score=41.79 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=56.3
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC--CcccccCCCCCCEEEEEEe
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~--~tL~~~~i~~~~~i~l~~r 452 (457)
..+.+.++|..+.....|+..+....|++.+..-++|++.++..+ .+|.+||+.+++++.+-.+
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~k 76 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCK 76 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCC
Confidence 456788899999999999999999999999999999999999754 5899999999998876543
No 185
>PRK06437 hypothetical protein; Provisional
Probab=78.79 E-value=18 Score=26.41 Aligned_cols=54 Identities=19% Similarity=0.361 Sum_probs=42.7
Q ss_pred cCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEE
Q 012736 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 223 (457)
+++.-.++++...||.+|-+.+ |++++..-+..+|+... .++-+++|+.+.++.
T Consensus 9 g~~~~~~~i~~~~tv~dLL~~L----gi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~ 62 (67)
T PRK06437 9 GHINKTIEIDHELTVNDIIKDL----GLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILE 62 (67)
T ss_pred CCcceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CceEcCCCCEEEEEe
Confidence 5566778888889999887654 78887777888999886 567788999998764
No 186
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=78.10 E-value=8.3 Score=28.54 Aligned_cols=53 Identities=21% Similarity=0.258 Sum_probs=39.0
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCc
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRT 435 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~t 435 (457)
+.|.-++|+...+.+.|+.||.|.-..+.++.|+.++.-.++. ..++|..+..
T Consensus 3 ~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~~k~l~~~~d 57 (71)
T PF02196_consen 3 CRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGEKKPLDWDQD 57 (71)
T ss_dssp EEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEEEEEE-TTSB
T ss_pred EEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCccccCCCc
Confidence 3455678999999999999999999999999999998877664 4456654443
No 187
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=78.04 E-value=16 Score=26.60 Aligned_cols=61 Identities=18% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCCEEEEEecCC-ccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 389 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+|+.+ +++.+ .||.+|-.. .++++...-+-.||..+..+ .-+.+-+++||.|.+..-.-||
T Consensus 6 NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r~-~w~~~~L~~gD~iEIv~~VgGG 67 (67)
T PRK07696 6 NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQKD-DHTDTSVFDGDQIEIVTFVGGG 67 (67)
T ss_pred CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCHH-HcCceecCCCCEEEEEEEecCC
Confidence 35444 55555 688887654 57888888889999988643 2444557889999998877776
No 188
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=77.30 E-value=63 Score=30.12 Aligned_cols=139 Identities=18% Similarity=0.262 Sum_probs=76.2
Q ss_pred ccccCCCCeEEEEEeecCceeeEEE-ecCCcEEEEE----ee-CCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCc
Q 012736 286 DYNIQKESTLHLVLRLRGGMQIFVK-TLTGKTITLE----VE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT 359 (457)
Q Consensus 286 ~~~i~~~~tl~l~~~~~~~~~i~i~-~~~g~~~~l~----v~-~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~ 359 (457)
+|-+.+||+|.+...-.+....... ..+|. +++. +. .+.|+.++.+.|.+++.- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~-I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------~-------- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGS-ITFPLIGEVKLGGETPAAAERKIASRLSK----------G-------- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCe-EEeeecceEEECCCCHHHHHHHHHHHHhh----------c--------
Confidence 4778888888776544444322222 23343 3322 22 688999999999987421 0
Q ss_pred ccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC--C-eEE--EEcCee-----
Q 012736 360 LADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-QRL--IFAGKQ----- 429 (457)
Q Consensus 360 l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~--~-q~l--~~~g~~----- 429 (457)
.|- .+..+.+......+..++|...-.+.=.+.+.+..|+.++-.+.- |+.+. . ..+ ..+|+.
T Consensus 62 --~~~--~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~AG---G~~~~~~~~~~i~~~~~g~~~~~~i 134 (239)
T TIGR03028 62 --GFV--KQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALAG---GVTPDGADVITLVREREGKIFRKQI 134 (239)
T ss_pred --Ccc--cCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHcC---CCCccCCCeEEEEEecCCeEEEEEE
Confidence 011 111233333333456777776555555567777788887655543 44432 2 112 234553
Q ss_pred -----cCCCCcccccCCCCCCEEEEE
Q 012736 430 -----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 430 -----L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+.....-.++-+++||+|++-
T Consensus 135 dl~~l~~~g~~~~ni~L~~GD~I~V~ 160 (239)
T TIGR03028 135 DFPALFNPGGDNENILVAGGDIIYVD 160 (239)
T ss_pred EHHHHHhcCCCcCCcEEcCCCEEEEc
Confidence 223334456778899998863
No 189
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=77.21 E-value=5.2 Score=39.45 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=53.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcC-CCCCCeEEE--EcCeecCCC-CcccccCCCCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLI--FAGKQLEDG-RTLADYNIQKES 445 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~l~--~~g~~L~d~-~tL~~~~i~~~~ 445 (457)
+...|-|+..+|+.....++...||.|++..|...-. -+...|.|. |-.++|.|+ .||++.|+.+-.
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsv 374 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSV 374 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhh
Confidence 5667889999999999999999999999999998763 444456665 568899765 599999987644
No 190
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=76.54 E-value=10 Score=29.28 Aligned_cols=64 Identities=19% Similarity=0.212 Sum_probs=42.6
Q ss_pred cEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec----C-cccc-ccCcccccccccCCcceeEEEeec
Q 012736 87 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----G-KQLE-DGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~----g-~~L~-d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
..++-..+..|||..++..+.+.+.+ ..+-||.-. + ..|. .+.|+.+.++.+|-.|.+-.+..+
T Consensus 14 ~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~D 83 (88)
T PF14836_consen 14 SVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEERNED 83 (88)
T ss_dssp EEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE--TT
T ss_pred cHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEeeccC
Confidence 35677789999999999999999999 556677532 2 2353 457999999999887777665443
No 191
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=76.11 E-value=22 Score=26.07 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=46.5
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..++++...|+++|-.. .|++++......||..+..+ --++.-+++||-|.+.--.-||
T Consensus 10 ~~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr~-~~~~~~l~~gD~ievv~~v~GG 68 (68)
T COG2104 10 KEVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPRS-QWADTILKEGDRIEVVRVVGGG 68 (68)
T ss_pred EEEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccch-hhhhccccCCCEEEEEEeecCC
Confidence 45777888999998765 68889988999999998743 2345667789999988877776
No 192
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=75.89 E-value=10 Score=28.63 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=35.5
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
.+.+....+....+.++++.+..+|+.+|++..+.+.....+.|.
T Consensus 3 ~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~ 47 (84)
T PF00564_consen 3 RVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYK 47 (84)
T ss_dssp EEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEE
T ss_pred EEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEee
Confidence 444554443333489999999999999999999999888899884
No 193
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=75.70 E-value=11 Score=27.00 Aligned_cols=65 Identities=23% Similarity=0.478 Sum_probs=51.1
Q ss_pred cCCcEEEEEeeCCCcHHHHHHHhhcc---cCCCCCCceEE-ecCeeccCCCcccccccccCceEEEEEE
Q 012736 312 LTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~---~~ip~~~q~l~-~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
.+|+...++.++++...-..++-.+. .+-|+++=.|. -.|.+|+-++...+||+.++.+|.|..+
T Consensus 3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 46888888998888877776665544 34677765555 5788999999999999999999998765
No 194
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.60 E-value=4 Score=39.14 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=47.1
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEE---cCeec-----CCCCcccccCCCCCCEEEEE
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQL-----EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~---~g~~L-----~d~~tL~~~~i~~~~~i~l~ 450 (457)
...+.-.-||.|+|..+..+.|+.+..++|+| +|+.- ..+..|-.|+|++|+.+-+-
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 44566778999999999999999999999998 45543 34578999999999988664
No 195
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=75.33 E-value=18 Score=32.48 Aligned_cols=63 Identities=29% Similarity=0.381 Sum_probs=45.7
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeCC------cccCCCccccccccC
Q 012736 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG------KQLEDGRTLADYNIQ 290 (457)
Q Consensus 228 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g------~~L~d~~tl~~~~i~ 290 (457)
.+.+.|..++|.+..+.++++.|++++-..++.+.||+..+ ..|.+.. .-++..+++.+....
T Consensus 3 ~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 35667888999999999999999999999999999996543 3344321 124455666665544
No 196
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=74.82 E-value=11 Score=28.84 Aligned_cols=64 Identities=16% Similarity=0.239 Sum_probs=45.0
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCC-CCeEEEEcCee-----cCCCCcccc----cCCCCCCEEEEEEe
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQ-----LEDGRTLAD----YNIQKESTLHLVLR 452 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~~g~~-----L~d~~tL~~----~~i~~~~~i~l~~r 452 (457)
.|..+.+.++++.+..+|+..|+++.++.. ..+.|.|-.-+ |..+.-|.+ |.....++|.+.++
T Consensus 8 ~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Ddegd~v~ltsd~DL~eai~i~~~~~~~~v~l~v~ 81 (82)
T cd06407 8 GEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDDEEWVLLTCDADLEECIDVYRSSGSHTIRLLVH 81 (82)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCCCCeEEeecHHHHHHHHHHHHHCCCCeEEEEee
Confidence 566899999999999999999999999976 67778774332 222222333 55556667766654
No 197
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=74.63 E-value=13 Score=27.79 Aligned_cols=58 Identities=10% Similarity=0.176 Sum_probs=41.8
Q ss_pred eEEeeecCCchHHHHHHHHhhhhCC----CCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 164 TITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi----p~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
...++++...||.+|.+.+...++- ......+..+|+... .++-+.+|+.|.++....
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~-----~~~~l~~gD~v~i~ppv~ 78 (80)
T cd00754 17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVR-----LDTPLKDGDEVAIIPPVS 78 (80)
T ss_pred eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcC-----CCcccCCCCEEEEeCCCC
Confidence 4667777889999999999877542 223455667787776 456789999998775443
No 198
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=74.42 E-value=6.9 Score=27.58 Aligned_cols=54 Identities=20% Similarity=0.334 Sum_probs=38.4
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|+| ||+ .++++.+.|+.++|+++..... -++++|....++..| .+++.+.++
T Consensus 1 M~I~v---N~k--~~~~~~~~tl~~lr~~~k~~~D------I~I~NGF~~~~d~~L-----~e~D~v~~I 54 (57)
T PF14453_consen 1 MKIKV---NEK--EIETEENTTLFELRKESKPDAD------IVILNGFPTKEDIEL-----KEGDEVFLI 54 (57)
T ss_pred CEEEE---CCE--EEEcCCCcCHHHHHHhhCCCCC------EEEEcCcccCCcccc-----CCCCEEEEE
Confidence 77777 454 4568888999999999877332 578999998775555 455665554
No 199
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=72.78 E-value=18 Score=27.18 Aligned_cols=45 Identities=16% Similarity=0.334 Sum_probs=36.6
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecC
Q 012736 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (457)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (457)
.+.++. +|....+.++++.|-.+|+.+|.++.+.+.....|.|..
T Consensus 3 ~vK~~~-~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~D 47 (81)
T smart00666 3 DVKLRY-GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQD 47 (81)
T ss_pred cEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEEC
Confidence 345543 677889999999999999999999999887667777764
No 200
>KOG4261 consensus Talin [Cytoskeleton]
Probab=72.41 E-value=5.7 Score=42.47 Aligned_cols=100 Identities=26% Similarity=0.345 Sum_probs=76.5
Q ss_pred EEEEeecCccHHHHHHHHhhhcC---CCCCCeEEEeC------CcccCCCccccccccCCCCeEEEEEeecCceeeEEEe
Q 012736 241 ITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIFA------GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKT 311 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~---ip~~~q~L~~~------g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~i~i~~ 311 (457)
-++..+++.+|-+--+.|.+++. .-+..+-|... |--|+.++++.+|.+.+++++..-.+. -..-+++
T Consensus 15 ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~---r~lkvrm 91 (1003)
T KOG4261|consen 15 KTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQ---RPLKVRM 91 (1003)
T ss_pred eeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhc---ccceeee
Confidence 34566789999888777777664 12445555432 344899999999999999998664332 2567899
Q ss_pred cCCcEEEEEeeCCCcHHHHHHHhhcccCCCCC
Q 012736 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
++|..-++.+..+.+|.+|--.|+.+.||--.
T Consensus 92 ldg~vkti~vd~sq~v~~L~~~ic~~igItny 123 (1003)
T KOG4261|consen 92 LDGAVKTIMVDDSQPVSQLMMTICNKIGITNY 123 (1003)
T ss_pred cccccceeeecccccHHHHHHHHHhccCccch
Confidence 99999999999999999999999998886543
No 201
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=71.84 E-value=15 Score=28.37 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=32.1
Q ss_pred cCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCe
Q 012736 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 352 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~ 352 (457)
++|.++.+.++++.+..+|..+|.+++++. ..-.+.|...
T Consensus 9 ~~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 9 AQDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred ecCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 488999999999999999999999999985 2233446543
No 202
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=71.48 E-value=17 Score=25.97 Aligned_cols=64 Identities=23% Similarity=0.484 Sum_probs=49.1
Q ss_pred CCceEEEEeecCccHHHHHHHHhhhcC---CCCCCeEEEe-CCcccCCCccccccccCCCCeEEEEEe
Q 012736 237 TGKTITLEVESSDTIDNVKAKIQDKEG---IPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLR 300 (457)
Q Consensus 237 ~g~~~~~~v~~~~tV~~lK~~I~~~~~---ip~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~~ 300 (457)
+|+...++.+.+....-+.++..+..| -|++.-.|.- +|..++-++.+.+||+.++-+++|.++
T Consensus 4 NGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 4 NGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 577777888877777777666555544 5777766663 688889999999999999999877654
No 203
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=71.45 E-value=15 Score=37.86 Aligned_cols=71 Identities=14% Similarity=0.166 Sum_probs=54.6
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCC----CCCCeEEE---EcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI----PPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi----p~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
++.|...+ +...+-++.+..|.||-..+-+..+= +.....|. -+|.+|+.+.||++.||.||+++++.-+-
T Consensus 4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 46666554 34777888999999999999888753 22233443 37899999999999999999999998653
No 204
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=71.07 E-value=9.8 Score=29.29 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.2
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC
Q 012736 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 268 (457)
Q Consensus 230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~ 268 (457)
.+-|..++|.++.+.+..+++.+++=+.++.+.|+|.+.
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 455677889999999999999999999999999999884
No 205
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=70.12 E-value=94 Score=28.93 Aligned_cols=213 Identities=16% Similarity=0.176 Sum_probs=111.2
Q ss_pred ccCcCcCcEEEEEEEecCCeeEEEEccCCceEEE----Eee-cCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccc
Q 012736 210 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITL----EVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 284 (457)
Q Consensus 210 ~y~i~~~~~i~l~~~~~~~~~i~v~~~~g~~~~~----~v~-~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl 284 (457)
+|-|..|++|.+.+--.......+......++.+ .+. .+.|++++.+.|..++.- +
T Consensus 1 ~Y~l~pGD~l~I~v~~~~~l~~~~~V~~dG~I~~P~iG~v~v~G~T~~e~~~~I~~~l~~----------------~--- 61 (239)
T TIGR03028 1 DYRLGPGDVLRITVFQQPDLTTDTRVSESGSITFPLIGEVKLGGETPAAAERKIASRLSK----------------G--- 61 (239)
T ss_pred CcEeCCCCEEEEEEecCcccceeEEECCCCeEEeeecceEEECCCCHHHHHHHHHHHHhh----------------c---
Confidence 4778888888877654333332233332223332 234 677999999999876521 0
Q ss_pred cccccCCCCeEEEEEeecCceeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCC---ceEE--ecCee------
Q 012736 285 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ---QRLI--FAGKQ------ 353 (457)
Q Consensus 285 ~~~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~---q~l~--~~g~~------ 353 (457)
+.-....+.+......+..++|-..=.+.-...+....|+.+.-..- =|+.+.. ..+. .+|+.
T Consensus 62 ---~~~~~p~V~V~v~~~~~~~V~V~GeV~~PG~~~l~~~~tl~~ai~~A---GG~~~~~~~~~~i~~~~~g~~~~~~id 135 (239)
T TIGR03028 62 ---GFVKQPQVTINVLQYRGQQVSVLGQVNRPGRYPLETAGRVSDVLALA---GGVTPDGADVITLVREREGKIFRKQID 135 (239)
T ss_pred ---CcccCCEEEEEEEeccceEEEEEEEecCCceEEcCCCCcHHHHHHHc---CCCCccCCCeEEEEEecCCeEEEEEEE
Confidence 00011122222233334566665444444446677778888764432 2233221 1111 23322
Q ss_pred ----ccCCCcccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCC-CCCeEEEE---
Q 012736 354 ----LEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP-PDQQRLIF--- 425 (457)
Q Consensus 354 ----L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip-~~~q~l~~--- 425 (457)
+.....-.++-+.+++.+++... -.++|-..-++.-.+.+.+++|+.++-.+......-. +..-.++.
T Consensus 136 l~~l~~~g~~~~ni~L~~GD~I~V~~~----~~v~v~G~V~~pg~~~~~~~~tl~~al~~aGG~~~~a~~~~v~i~R~~~ 211 (239)
T TIGR03028 136 FPALFNPGGDNENILVAGGDIIYVDRA----PVFYIYGEVQRPGAYRLERNMTVMQALAQGGGLTPRGTERGIRVMRRDD 211 (239)
T ss_pred HHHHHhcCCCcCCcEEcCCCEEEEcCC----ccEEEEeEccCCeEEEeCCCCCHHHHHHhcCCCCcccCcceEEEEEECC
Confidence 22222334667888899888632 2467765555666777788999988766655444321 22223332
Q ss_pred cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 426 AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 426 ~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+|+.-.-...+.+ .+++||.|++--+
T Consensus 212 ~g~~~~~~~~~~~-~l~~gDii~V~~s 237 (239)
T TIGR03028 212 KGAVEEVSGELGD-LVQPDDVIYVRES 237 (239)
T ss_pred CCcEEEEecCCCc-ccCCCCEEEEeCc
Confidence 3332111111222 3889999998643
No 206
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=69.78 E-value=8.8 Score=28.90 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=32.7
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
++.+.++++.+..+|..+|+++...+++.-.|.|.
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~ 42 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYR 42 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEec
Confidence 57788999999999999999999999999999994
No 207
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=69.09 E-value=18 Score=26.97 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=36.8
Q ss_pred EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE
Q 012736 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
.|..++|+..++.+.|++|+.|+-+..+++.++.|..-.|-.
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrl 44 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPMEHYLRL 44 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhHheeEE
Confidence 355678999999999999999999999999999998876544
No 208
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=69.09 E-value=16 Score=28.30 Aligned_cols=56 Identities=16% Similarity=0.286 Sum_probs=30.1
Q ss_pred EEec-CCccHHHHHHHHhh-hcCCCCCCe----EEEEcCee----cCCCCcccccCCCCCCEEEEE
Q 012736 395 LEVE-SSDTIDNVKAKIQD-KEGIPPDQQ----RLIFAGKQ----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 395 l~v~-~~~tV~~lK~~i~~-~~gip~~~q----~l~~~g~~----L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+.++ ..+|+.+|-.+|-. +.|+..-.. .++|..-. -..+++|+++||.+|+.|.+.
T Consensus 2 v~~d~~~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~ 67 (87)
T PF14732_consen 2 VKVDTKKMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVD 67 (87)
T ss_dssp EEE-TTT-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEE
T ss_pred EEEechhCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEE
Confidence 4555 35699999998754 566655322 23333222 123468999999999998763
No 209
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=68.82 E-value=14 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=38.0
Q ss_pred EEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccE
Q 012736 5 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 48 (457)
Q Consensus 5 ~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~ 48 (457)
|..+||++-.+.+.|+.||.++=.|+-++.|++++.=.++.-|.
T Consensus 4 V~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~ 47 (73)
T cd01817 4 VILPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGG 47 (73)
T ss_pred EECCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecC
Confidence 45689999999999999999999999999999988766666553
No 210
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=68.28 E-value=6.6 Score=38.30 Aligned_cols=68 Identities=19% Similarity=0.284 Sum_probs=58.0
Q ss_pred cCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCC--CCccccCcCcCcEEEEEEEecCC
Q 012736 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG--RTLADYNIQKESTLHLVLRLRGG 228 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~--~tL~~y~i~~~~~i~l~~~~~~~ 228 (457)
..+.+++.|...-....++...+...|++.+.--++|+++.+.++ .++..||+..++++.+-.+.+..
T Consensus 11 ~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~ 80 (380)
T KOG0012|consen 11 FEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP 80 (380)
T ss_pred ceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence 566788888888889999999999999999999999999999665 68999999999998776654433
No 211
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=67.93 E-value=17 Score=27.03 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=39.0
Q ss_pred cCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC--eecC
Q 012736 387 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLE 431 (457)
Q Consensus 387 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g--~~L~ 431 (457)
-++|+...+.+.|+.||.|+-.++.++-|++++.--++.-| ++|.
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~k~l~ 52 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGDKPLV 52 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCCcccc
Confidence 46788899999999999999999999999999988777655 4565
No 212
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=67.41 E-value=12 Score=28.74 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=35.0
Q ss_pred eEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCcc
Q 012736 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 40 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~ 40 (457)
++=|-.++|.++++++..+|+.+.+=+.+..+.|+|.+-
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~ 41 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYT 41 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHH
Confidence 345666899999999999999999999999999999875
No 213
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=66.26 E-value=6.5 Score=32.35 Aligned_cols=48 Identities=19% Similarity=0.266 Sum_probs=37.7
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccc
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~ 438 (457)
+..-+-|+.+.||+++...|..+.+++++..-|+.++..+..+.++++
T Consensus 41 K~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~ 88 (121)
T PTZ00380 41 KVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGD 88 (121)
T ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHH
Confidence 444346999999999999999999999999666667766666666654
No 214
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=64.98 E-value=12 Score=40.00 Aligned_cols=45 Identities=22% Similarity=0.441 Sum_probs=40.3
Q ss_pred cCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEcc
Q 012736 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~ 51 (457)
..++..+.+-+.++.|+.++.+.|.+..|+|...|.|+|.|....
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h 365 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSH 365 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccc
Confidence 456788999999999999999999999999999999999877643
No 215
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=63.32 E-value=26 Score=34.78 Aligned_cols=70 Identities=23% Similarity=0.272 Sum_probs=53.8
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhc--CCCCCCeEEEEc----Cee--cCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFA----GKQ--LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~l~~~----g~~--L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|.+.++..+| .+.++|.++++.+-|-.++-+.. +-.|++..+.-+ |.. +..+.|+.+.|++.|..++|..
T Consensus 1 Mi~rfRsk~G-~~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s~l~dqt~~dlGL~hGqmLyl~y 78 (571)
T COG5100 1 MIFRFRSKEG-QRRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFSLLKDQTPDDLGLRHGQMLYLEY 78 (571)
T ss_pred CeEEEecCCC-ceeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeeecccccChhhhccccCcEEEEEe
Confidence 4566787777 47899999999999988887765 455666666542 332 3466899999999999999976
No 216
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=63.02 E-value=19 Score=38.33 Aligned_cols=183 Identities=17% Similarity=0.206 Sum_probs=99.6
Q ss_pred EEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE----ecCccc--cccCcccccccccCCcceeEE--Ee-ecceeeeEe
Q 012736 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI----FAGKQL--EDGRTLADYNIQKESTLHLVL--RL-RGGMQIFVK 158 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~----~~g~~L--~d~~tl~~y~i~~~s~i~l~~--~~-~~~~~i~v~ 158 (457)
.+.+.|+...+++.+|+.|+...++|.+.-+++ -+|..+ .++.+|+.. .++.+|.+.+ .+ .+...+.|.
T Consensus 878 ~~kl~Vd~rmr~~AFKkHiE~~i~V~~~HFKi~R~~~~N~~~~S~~~NetLs~~--~~~~~iTI~LG~~Lk~dE~~~KI~ 955 (1203)
T KOG4598|consen 878 FHKLDVDSRMRVLAFKKHVEEQLEVDKDHFKIVRHASDNGSEASFMDNETLSGA--FQSCFITIKLGAPLKSDEKMMKII 955 (1203)
T ss_pred heeeeccceeeHHHHHHHHHHHhCcChhHeEEEEEecCCcchhhhccchhhhhh--cccceEEEEecCcCCCCceeeEEE
Confidence 467899999999999999999999999887776 234444 356677764 3555555543 21 122233333
Q ss_pred ec---cC---c---eEEeeecCCchHHHHHHHHhhhhC------C--CCCceEEEE-----CCeecCCC-CCccccC--c
Q 012736 159 TL---TG---K---TITLEVESSDTIDNVKAKIQDKEG------I--PPDQQRLIF-----AGKQLEDG-RTLADYN--I 213 (457)
Q Consensus 159 ~~---~g---~---~~~~~v~~~~tV~~lK~~i~~~~g------i--p~~~q~L~~-----~g~~L~d~-~tL~~y~--i 213 (457)
.+ .. + .+..-+..++||++.|..+-.+.. . .....|+.- -|+.+-|. .++.|-+ +
T Consensus 956 ~L~~l~NE~e~~k~l~e~V~~~~tT~~Q~K~ELi~~L~~i~~~~ltLS~~r~R~~~K~g~~Pg~~~lD~~~~~eD~~~~~ 1035 (1203)
T KOG4598|consen 956 LLDILENERENWKPLFELVVSQSTTIGQVKLELLRMLKEVYGEELTLSMVRLRELGKSGVGPGRAVLDPNDTLEDRSYNW 1035 (1203)
T ss_pred eehhhhccccCCcchhhhhhcCcccHHHHHHHHHHHHHHHhhcccchhHHHHHHHccCCcCCceEecCcchhhhhhhhhh
Confidence 22 11 1 122336788999999887654332 2 222222221 14544333 3333322 1
Q ss_pred C------cC-cEEEEEEEecCCeeEEEEccCC-----ceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEe
Q 012736 214 Q------KE-STLHLVLRLRGGMQIFVKTLTG-----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 273 (457)
Q Consensus 214 ~------~~-~~i~l~~~~~~~~~i~v~~~~g-----~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~ 273 (457)
. +- +.+ ...++.....++|+-+.- ..+.-.+-+.+.+.++++.+.+-.|||.+...++.
T Consensus 1036 ~~~~~~qE~~deV-~~~k~~~sL~i~vRRW~Ps~~e~~pFQEV~Ld~~~~~E~Re~LS~ISgIPiD~l~~~K 1106 (1203)
T KOG4598|consen 1036 CSHLYLQEITDEV-MIGKPGESLPIMVRRWRPSTVEVNPFQEVLLDANAEVEFREALSKISGIPVDRLAITK 1106 (1203)
T ss_pred HHHHHHHHHHhhc-ccCCCCccchhhheeccccceecCCceeEEecCcchHHHHHHHHHhcCCchhhhhhhh
Confidence 0 00 000 000111123334433221 12222334667899999999999999999766554
No 217
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=62.86 E-value=15 Score=36.31 Aligned_cols=66 Identities=17% Similarity=0.285 Sum_probs=51.5
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeC---Cccc-CCCccccccccCCCCe
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQL-EDGRTLADYNIQKEST 294 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~---g~~L-~d~~tl~~~~i~~~~t 294 (457)
-.|.|+..+|..+...++-++||.+|+.-|+..-.-.+..+.+++. -+.| ++++||.+-|+.+...
T Consensus 306 TsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl 375 (380)
T KOG2086|consen 306 TSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL 375 (380)
T ss_pred ceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence 4577889999999999999999999999999887765554444433 3445 6789999999987544
No 218
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=62.48 E-value=25 Score=27.86 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=33.9
Q ss_pred EcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE
Q 012736 386 KTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 386 ~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
+...|.+..+.|+.+.+..+|+.++++..+++.. ..+-|
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky 56 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKY 56 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEE
Confidence 4567889999999999999999999999999986 55555
No 219
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=62.11 E-value=47 Score=25.06 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=38.2
Q ss_pred EEEecC-CccHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVES-SDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~-~~tV~~lK~~i~~~~g-----ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+++++ ..||.+|+..+.++.. ......+..-|+....+ +.-+++||.|.+.-+..||
T Consensus 18 ~~~v~~~~~tv~~l~~~L~~~~~~~~~~~~~~~~~~aVN~~~~~~-----~~~l~dgDeVai~PPVsGG 81 (81)
T PRK11130 18 ALELAADFPTVEALRQHLAQKGDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_pred eEEecCCCCCHHHHHHHHHHhCccHHhhhcCCCEEEEECCEEcCC-----CCCCCCCCEEEEeCCCCCC
Confidence 344543 5799999999998862 11233344455544332 3347889999999888887
No 220
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=61.93 E-value=43 Score=25.82 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=35.9
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 428 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~ 428 (457)
++|.+.. .|.++.+.|+++.+..+|..+|.++.++. ....+-|...
T Consensus 3 ikVKv~~-~~Dv~~i~v~~~i~f~dL~~kIrdkf~~~-~~~~iKykDE 48 (86)
T cd06408 3 IRVKVHA-QDDTRYIMIGPDTGFADFEDKIRDKFGFK-RRLKIKMKDD 48 (86)
T ss_pred EEEEEEe-cCcEEEEEcCCCCCHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 4455553 56699999999999999999999999995 5566666443
No 221
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=61.87 E-value=2.6 Score=40.33 Aligned_cols=60 Identities=20% Similarity=0.485 Sum_probs=0.0
Q ss_pred eeeEEEecCCcEEEEEe--e-C--CCcHHHHHHHhhc----------ccCCCCCCce-----EEecCeeccCCCcccccc
Q 012736 305 MQIFVKTLTGKTITLEV--E-S--SDTIDNVKAKIQD----------KEGIPPDQQR-----LIFAGKQLEDGRTLADYN 364 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v--~-~--~~Tv~~lK~~I~~----------~~~ip~~~q~-----l~~~g~~L~d~~~l~~~~ 364 (457)
++|+.|....-.+.+.+ . + +++|.|+|..++. .+++|.++-+ |.|+.+.+-|+++|.+..
T Consensus 79 ItV~Lks~rnp~l~i~L~~~~plattSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l 158 (309)
T PF12754_consen 79 ITVHLKSLRNPPLDISLPNVPPLATTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVL 158 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEeecCCCCCceeEeCCCCcCCcCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCccCCCcCcHHHHH
Confidence 34555555444443332 2 2 6899999999999 9999999988 999999998889998774
No 222
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=61.74 E-value=33 Score=33.41 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+++..+.||.+|-.. .+++++...+..||+.+..+ .-.++-+++||.|.+..-.-||
T Consensus 9 ~~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr~-~w~~t~LkeGD~IEII~~VgGG 66 (326)
T PRK11840 9 PRQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPRS-EYGQVALEEGDELEIVHFVGGG 66 (326)
T ss_pred EEecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCHH-HcCccccCCCCEEEEEEEecCC
Confidence 4566788899988765 58899999999999999632 3455668889999999888888
No 223
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=60.97 E-value=28 Score=25.94 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=34.6
Q ss_pred eEEEcCCCCEEEEEec-CCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736 383 IFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
+.++.. |..+.+.++ .+.|..+|+.+|+++.+.+.....+.|..
T Consensus 3 vK~~~~-~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 3 VKVKYG-GEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred EEEEec-CCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 334433 567888888 89999999999999999987677777743
No 224
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=60.47 E-value=23 Score=26.97 Aligned_cols=37 Identities=19% Similarity=0.323 Sum_probs=31.2
Q ss_pred ccCCceEEEEeec--CccHHHHHHHHhhhcCCCCCCeEEEe
Q 012736 235 TLTGKTITLEVES--SDTIDNVKAKIQDKEGIPPDQQRLIF 273 (457)
Q Consensus 235 ~~~g~~~~~~v~~--~~tV~~lK~~I~~~~~ip~~~q~L~~ 273 (457)
+.+|.++.+.+.+ +-+..+|++++..+++++ ...+.|
T Consensus 6 ty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~--~f~lKY 44 (81)
T cd06396 6 TYNGESQSFLVSDSENTTWASVEAMVKVSFGLN--DIQIKY 44 (81)
T ss_pred EECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC--cceeEE
Confidence 3678899999998 669999999999999998 455555
No 225
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=59.64 E-value=27 Score=28.11 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=29.5
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCC
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 38 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~ 38 (457)
|+|-..+|.+-++.|...-+-.+||+++-+|.|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 688889999999999999999999999999999987
No 226
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=58.44 E-value=16 Score=38.17 Aligned_cols=63 Identities=37% Similarity=0.537 Sum_probs=42.4
Q ss_pred CEEEEEecCCccHHHHHHHHhhhc--CCC------CCCeEEEE--c--Ce-ecCCC-------------CcccccCCCCC
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF--A--GK-QLEDG-------------RTLADYNIQKE 444 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~--~--g~-~L~d~-------------~tL~~~~i~~~ 444 (457)
..+.++|-..+||.++|++|-+.. +.| +++.-|.+ + |+ .|.|. .||+.|||.+|
T Consensus 202 ~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 281 (539)
T PF08337_consen 202 EEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPDG 281 (539)
T ss_dssp TCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--TT
T ss_pred ceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCCC
Confidence 457888889999999999997764 333 23333433 2 33 55543 58999999999
Q ss_pred CEEEEEEec
Q 012736 445 STLHLVLRL 453 (457)
Q Consensus 445 ~~i~l~~r~ 453 (457)
+++.+..+.
T Consensus 282 a~vaLv~k~ 290 (539)
T PF08337_consen 282 ATVALVPKQ 290 (539)
T ss_dssp EEEEEEES-
T ss_pred ceEEEeecc
Confidence 999998875
No 227
>KOG4261 consensus Talin [Cytoskeleton]
Probab=58.21 E-value=15 Score=39.52 Aligned_cols=102 Identities=26% Similarity=0.331 Sum_probs=77.4
Q ss_pred CcEEEEEeeCCCcHHHHHHHhhcccCCC---CCCceEE------ecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012736 314 GKTITLEVESSDTIDNVKAKIQDKEGIP---PDQQRLI------FAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip---~~~q~l~------~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~ 384 (457)
+-+-++-+.|+++|.|--+.|++++.-. +....|+ .+|--|++++++.+|-+.++.++.-..+.+ .+.
T Consensus 12 ~v~ktmqfepst~vyda~~~ire~~~~~~~~a~~yglf~~de~~~k~~wle~grt~~~y~~~n~d~~ey~~k~r---~lk 88 (1003)
T KOG4261|consen 12 NVVKTMQFEPSTLVYDACKVIREKFAEADVGASEYGLFLSDEDPSKGIWLEAGRTLDYYMLRNGDTLEYKRKQR---PLK 88 (1003)
T ss_pred ceeeeeeecCchHHHHHHHHHHHHhhhcccCchhcceeeecCCcccceeecCCccHHHHHHhcccccchhhhcc---cce
Confidence 3345688999999999999998875421 2222333 244557888999999888888877654332 356
Q ss_pred EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC
Q 012736 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 418 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 418 (457)
++.++|..-++.|+...+|.+|..-|+.+.||.-
T Consensus 89 vrmldg~vkti~vd~sq~v~~L~~~ic~~igItn 122 (1003)
T KOG4261|consen 89 VRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITN 122 (1003)
T ss_pred eeecccccceeeecccccHHHHHHHHHhccCccc
Confidence 7778898999999999999999999999999864
No 228
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=56.66 E-value=52 Score=25.07 Aligned_cols=53 Identities=19% Similarity=0.386 Sum_probs=41.2
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE-EcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~-~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+..+.+.+++..||+++-+. .|||..+--++ -||+...-+ |-+++|+.|.+.-
T Consensus 22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~~-----~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDFD-----YRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCCc-----ccCCCCCEEEEEe
Confidence 45688899999999987654 79999998665 489988754 5566799888753
No 229
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=56.49 E-value=64 Score=25.97 Aligned_cols=63 Identities=29% Similarity=0.333 Sum_probs=43.1
Q ss_pred cEEEEEecccccHHHHHHHHhhh----hC--CCCc-cceEeeccEE--ccCCCccccccc-----ccccceeEEEEe
Q 012736 11 KTITLEVESSDTIDNVKAKIQDK----EG--IPPD-QQRLIFAGKQ--LEDGRTLADYNI-----QKESTLHLVLRL 73 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~----~~--ip~~-~q~l~~~g~~--L~~~~tl~~y~i-----~~~sti~l~~~~ 73 (457)
.++++.+.+++|++++.+.+-.+ .+ -+++ ...|...|+. |..+..|.+|.. ..+..+||++..
T Consensus 29 ~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~~~~~L~L~~ 105 (108)
T smart00144 29 QTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNGREPHLVLMT 105 (108)
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcCCCceEEEEe
Confidence 67999999999999998877665 22 2222 4556666664 667777777753 355677777653
No 230
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=56.17 E-value=86 Score=23.72 Aligned_cols=45 Identities=24% Similarity=0.321 Sum_probs=34.6
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCC--CCCeEEEE------cCeecCCCC
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIP--PDQQRLIF------AGKQLEDGR 434 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip--~~~q~l~~------~g~~L~d~~ 434 (457)
+...++.|+.++|..++-..+.++.+++ +....|+- ..+.|.|+.
T Consensus 12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e 64 (87)
T cd01768 12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDE 64 (87)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCC
Confidence 6678999999999999999999999998 55555542 234666554
No 231
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=56.07 E-value=18 Score=37.86 Aligned_cols=65 Identities=35% Similarity=0.512 Sum_probs=42.3
Q ss_pred CcEEEEEecccccHHHHHHHHhhh--hCCCCcc------ceEee----ccE-EccCC-------------Cccccccccc
Q 012736 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGK-QLEDG-------------RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~~------q~l~~----~g~-~L~~~-------------~tl~~y~i~~ 63 (457)
+..+++.|-..|||..+|+||-+. -+.|.++ -.|-| .|+ .|.|. +||+.|+|.+
T Consensus 201 ~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 280 (539)
T PF08337_consen 201 SEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEWRQGRGGRLILQDEDSTSKVEGGWKRLNTLAHYKVPD 280 (539)
T ss_dssp STCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEEEETTSEEEEESSSSTTSEEETTEEE--BHHHHT--T
T ss_pred CceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceeeecCCCCcccccCCCCCcccCCCceEeccHhhcCCCC
Confidence 467889999999999999999664 4454433 23323 233 35442 5899999999
Q ss_pred ccceeEEEEec
Q 012736 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
++++-++.+..
T Consensus 281 ga~vaLv~k~~ 291 (539)
T PF08337_consen 281 GATVALVPKQH 291 (539)
T ss_dssp TEEEEEEES--
T ss_pred CceEEEeeccc
Confidence 99999988654
No 232
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=55.93 E-value=32 Score=25.66 Aligned_cols=39 Identities=21% Similarity=0.336 Sum_probs=31.2
Q ss_pred CCceEEEEee-cCccHHHHHHHHhhhcCCCCCCeEEEeCC
Q 012736 237 TGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAG 275 (457)
Q Consensus 237 ~g~~~~~~v~-~~~tV~~lK~~I~~~~~ip~~~q~L~~~g 275 (457)
+|....+.+. .+.+..+|+++|+++++++.....+.|.+
T Consensus 8 ~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D 47 (81)
T cd05992 8 GGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPD 47 (81)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeC
Confidence 3567778888 88899999999999999876555666644
No 233
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=54.98 E-value=46 Score=25.03 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=37.1
Q ss_pred ceEEeeecCCchHHHHHHHHhhhhC-CCC--CceEEEECCeecCCCCCccccCcCcCcEEEEEEE
Q 012736 163 KTITLEVESSDTIDNVKAKIQDKEG-IPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~g-ip~--~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (457)
....++++...||.+|.+.+..+.. +.. ..-.+..+|+... .++-+.+|++|.++..
T Consensus 19 ~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~-----~~~~l~dgDeVai~Pp 78 (82)
T PLN02799 19 SDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTT-----ESAALKDGDELAIIPP 78 (82)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcC-----CCcCcCCCCEEEEeCC
Confidence 4567788889999999999976541 111 1123456666653 3456788999877643
No 234
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=54.87 E-value=9 Score=30.08 Aligned_cols=30 Identities=33% Similarity=0.681 Sum_probs=21.2
Q ss_pred EEEecCccccccCccccc-ccccCCcceeEE
Q 012736 118 RLIFAGKQLEDGRTLADY-NIQKESTLHLVL 147 (457)
Q Consensus 118 ~L~~~g~~L~d~~tl~~y-~i~~~s~i~l~~ 147 (457)
.|.|+|++|..+.+|++| |-.+.+.|.+.+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl 33 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKL 33 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEe
Confidence 478999999999999999 333333343333
No 235
>PRK01777 hypothetical protein; Validated
Probab=54.40 E-value=92 Score=24.52 Aligned_cols=65 Identities=8% Similarity=0.074 Sum_probs=41.6
Q ss_pred ceeeEEEcC-CC--CEEEEEecCCccHHHHHHHHhhhcCCCCC--C-----eEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736 380 GMQIFVKTL-TG--KTITLEVESSDTIDNVKAKIQDKEGIPPD--Q-----QRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~-~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~--~-----q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|+|.|... .+ ....+++++++||.++-... ||+.. . -.+.-+|+...-+. -+++|+.|.+
T Consensus 3 ~i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~s----gi~~~~pei~~~~~~vgI~Gk~v~~d~-----~L~dGDRVeI 73 (95)
T PRK01777 3 KIRVEVVYALPERQYLQRLTLQEGATVEEAIRAS----GLLELRTDIDLAKNKVGIYSRPAKLTD-----VLRDGDRVEI 73 (95)
T ss_pred eeEEEEEEECCCceEEEEEEcCCCCcHHHHHHHc----CCCccCcccccccceEEEeCeECCCCC-----cCCCCCEEEE
Confidence 355555432 22 34678899999999987665 66555 2 24556778776544 4556999988
Q ss_pred EEec
Q 012736 450 VLRL 453 (457)
Q Consensus 450 ~~r~ 453 (457)
.-.|
T Consensus 74 yrPL 77 (95)
T PRK01777 74 YRPL 77 (95)
T ss_pred ecCC
Confidence 6554
No 236
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=54.20 E-value=25 Score=26.54 Aligned_cols=37 Identities=11% Similarity=0.238 Sum_probs=32.4
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCc
Q 012736 240 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~ 276 (457)
|+.+.+.+.....+|..+|.++++++++.-.|-|...
T Consensus 8 TVai~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~ 44 (78)
T cd06411 8 TVALRAPRGADVSSLRALLSQALPQQAQRGQLSYRAP 44 (78)
T ss_pred EEEEEccCCCCHHHHHHHHHHHhcCChhhcEEEecCC
Confidence 4567778999999999999999999999999999653
No 237
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=53.81 E-value=79 Score=22.57 Aligned_cols=57 Identities=12% Similarity=0.247 Sum_probs=37.9
Q ss_pred cCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEe
Q 012736 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (457)
+|+.+.+ + ..|+.+|.+.+ +++++......+++... .....+.-+++|+.|.++.-.
T Consensus 6 Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~-~~~~~~~~L~dgD~Ieiv~~V 62 (65)
T PRK06488 6 NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVH-KEARAQFVLHEGDRIEILSPM 62 (65)
T ss_pred CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcC-HHHcCccccCCCCEEEEEEec
Confidence 5666665 3 35888888765 56665555667787765 234456778999999876543
No 238
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.65 E-value=28 Score=32.75 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=55.7
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~ 374 (457)
..+.|+..+|.+++..++...|...++..+.-+.+.-++--.|. |.-..+ +-.++|..+++-|.+++.+.
T Consensus 211 crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil~ 285 (290)
T KOG2689|consen 211 CRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLILE 285 (290)
T ss_pred eEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheecc
Confidence 46889999999999999999999999999999988777544444 554444 33578888898888887765
No 239
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=53.57 E-value=26 Score=28.86 Aligned_cols=54 Identities=20% Similarity=0.483 Sum_probs=36.5
Q ss_pred EecC-CccHHHHHHHHhhhc----CCCCCC------eEEEEc----------------C-eec---CCCCcccccCCCCC
Q 012736 396 EVES-SDTIDNVKAKIQDKE----GIPPDQ------QRLIFA----------------G-KQL---EDGRTLADYNIQKE 444 (457)
Q Consensus 396 ~v~~-~~tV~~lK~~i~~~~----gip~~~------q~l~~~----------------g-~~L---~d~~tL~~~~i~~~ 444 (457)
.|+. +.||.+|++.+.+.. |+||-+ .++++. . -.| +++.||.+|||.+.
T Consensus 21 ~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nE 100 (122)
T PF10209_consen 21 NVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENE 100 (122)
T ss_pred cCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCcc
Confidence 3776 889999988777654 665533 333331 1 144 56779999999998
Q ss_pred CEEEE
Q 012736 445 STLHL 449 (457)
Q Consensus 445 ~~i~l 449 (457)
.-|-+
T Consensus 101 TEiSf 105 (122)
T PF10209_consen 101 TEISF 105 (122)
T ss_pred ceeee
Confidence 87754
No 240
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=53.37 E-value=86 Score=22.88 Aligned_cols=52 Identities=10% Similarity=0.144 Sum_probs=38.8
Q ss_pred eEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEE
Q 012736 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (457)
...++++...||.+|-+.+ +++++.-.+..+|+... .++-+++|+.+.++.-
T Consensus 15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~-----~~~~l~~gD~Veii~~ 66 (70)
T PRK08364 15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVAL-----EDDPVKDGDYVEVIPV 66 (70)
T ss_pred ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECC-----CCcCcCCCCEEEEEcc
Confidence 4567788889999988766 66666666778888874 3666888998877643
No 241
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=52.33 E-value=83 Score=23.49 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=39.6
Q ss_pred eEEeeecCC-chHHHHHHHHhhhhC-CC--CCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 164 TITLEVESS-DTIDNVKAKIQDKEG-IP--PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 164 ~~~~~v~~~-~tV~~lK~~i~~~~g-ip--~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
...+++... .||.+|++.+.++++ +- .....+..+++...+ +.-+++|+.|.++..-.
T Consensus 17 ~~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v~vn~~~v~~-----~~~l~dgDevai~Ppvs 78 (80)
T TIGR01682 17 EETLELPDESTTVGELKEHLAKEGPELAASRGQVMVAVNEEYVTD-----DALLNEGDEVAFIPPVS 78 (80)
T ss_pred eEEEECCCCCcCHHHHHHHHHHhCchhhhhccceEEEECCEEcCC-----CcCcCCCCEEEEeCCCC
Confidence 356778766 899999999988763 11 122355567776664 56788899998775433
No 242
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=51.89 E-value=54 Score=24.04 Aligned_cols=61 Identities=11% Similarity=0.186 Sum_probs=46.3
Q ss_pred eEEeeecCCchHHHHHHHHhhhhCC--CCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 164 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gi--p~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
...+.+....||.+|.+.+..++.- ......+..+|+...+ .-.++-+++|++|.++....
T Consensus 13 ~~~~~~~~~~tv~~ll~~l~~~~p~~~~~~~~~v~vN~~~v~~--~~~~~~l~~gD~V~i~ppvs 75 (77)
T PF02597_consen 13 EEEIEVPEGSTVRDLLEALAERYPELALRDRVAVAVNGEIVPD--DGLDTPLKDGDEVAILPPVS 75 (77)
T ss_dssp EEEEEESSTSBHHHHHHHHCHHTGGGHTTTTEEEEETTEEEGG--GTTTSBEETTEEEEEEESTS
T ss_pred CeEEecCCCCcHHHHHHHHHhhccccccCccEEEEECCEEcCC--ccCCcCcCCCCEEEEECCCC
Confidence 5567888999999999999876531 2356777888988887 36677789999998875443
No 243
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=51.20 E-value=35 Score=36.62 Aligned_cols=44 Identities=23% Similarity=0.448 Sum_probs=38.9
Q ss_pred ccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccc
Q 012736 83 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 126 (457)
Q Consensus 83 ~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 126 (457)
..++..+.+.++++.|+..++++|...+|+|...|.|+|.|...
T Consensus 321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLS 364 (732)
T ss_pred eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCcc
Confidence 34567788899999999999999999999999999999997653
No 244
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=50.24 E-value=56 Score=24.46 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=34.6
Q ss_pred EEEEEccCCcEEE-EEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecC
Q 012736 78 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 123 (457)
Q Consensus 78 ~i~vk~~~g~~~~-l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g 123 (457)
.+.+. ..|.... +.+.++.+..+|+.+|+.+.+.+.....|.|..
T Consensus 3 ~vK~~-~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D 48 (84)
T PF00564_consen 3 RVKVR-YGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKD 48 (84)
T ss_dssp EEEEE-ETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEE
T ss_pred EEEEE-ECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeC
Confidence 34444 3344444 889999999999999999999997777887764
No 245
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=50.13 E-value=43 Score=25.31 Aligned_cols=48 Identities=21% Similarity=0.471 Sum_probs=34.0
Q ss_pred ccHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEE
Q 012736 401 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+..||+.+.+++.+++.+..+|.. +|..++|+.-+... +..|..+.+
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL---p~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL---PDNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS---SSSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC---CCCCEEEEE
Confidence 6899999999999999977777766 79999877432222 234555544
No 246
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=50.11 E-value=55 Score=24.91 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.8
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCC--CCCCeEEE
Q 012736 240 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 272 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~i--p~~~q~L~ 272 (457)
.-++.|...+|+.+|-+++.+++++ ++..+.|.
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7789999999999999999999998 55567774
No 247
>PF10787 YfmQ: Uncharacterised protein from bacillus cereus group; InterPro: IPR019723 This entry represents proteins conserved in the Bacillus cereus group. Several members are called YfmQ but the function is not known.
Probab=50.06 E-value=42 Score=28.23 Aligned_cols=87 Identities=22% Similarity=0.323 Sum_probs=62.1
Q ss_pred ccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCc------------ccccccccccceeEEEEecCcEEEEEEccCC
Q 012736 19 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRT------------LADYNIQKESTLHLVLRLRGGMQIFVKTLTG 86 (457)
Q Consensus 19 ~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~t------------l~~y~i~~~sti~l~~~~~~~~~i~vk~~~g 86 (457)
|+-.|+.+-+|.+=+.....+.=..-++|+.|++... |+.|.+.++..-.+.-+-.++..+.|++-.|
T Consensus 23 Pt~vVe~liskfe~H~kL~~~~~tVti~G~~Lege~K~~~I~~FNeAiFLekyY~~P~~e~~~l~pe~~gtPlvI~tKkG 102 (149)
T PF10787_consen 23 PTSVVEWLISKFELHPKLDEENTTVTIDGKRLEGEDKSQIIDQFNEAIFLEKYYIPPGNEERYLHPENSGTPLVIDTKKG 102 (149)
T ss_pred cHHHHHHHHHHheecccccccceEEEECCeecCchHHHHHHHHHhHHHHHHhhccCCCCcccccCcccCCCCEEEEeccC
Confidence 6778888888887777777777788999999987532 4456776666644444445677888998877
Q ss_pred c-EEEEEEeC-CCCHHHHHHH
Q 012736 87 K-TITLEVES-SDTIDNVKAK 105 (457)
Q Consensus 87 ~-~~~l~v~~-~~tV~~lK~~ 105 (457)
+ .+.+.+.+ +|-|.-+|+.
T Consensus 103 K~dv~f~vYsYdDHVDVVKQy 123 (149)
T PF10787_consen 103 KKDVTFFVYSYDDHVDVVKQY 123 (149)
T ss_pred cceeEEEEEecccHHHHHHHh
Confidence 6 47888766 4456666655
No 248
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=50.02 E-value=16 Score=28.74 Aligned_cols=29 Identities=38% Similarity=0.782 Sum_probs=22.9
Q ss_pred eEeeccEEccCCCcccccccccccceeEEE
Q 012736 42 RLIFAGKQLEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 42 ~l~~~g~~L~~~~tl~~y~i~~~sti~l~~ 71 (457)
.|.|.|++|.++.+|.+| +-.|..-.+++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNEKtKiiv 31 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNEKTKIIV 31 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCcceeEEE
Confidence 489999999999999999 66555545443
No 249
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=49.49 E-value=1.1e+02 Score=23.19 Aligned_cols=61 Identities=11% Similarity=0.255 Sum_probs=39.8
Q ss_pred ceEEeeecCCchHHHHHHHHhhhhCC------C-----CCceEEEECCeecCCCCCccccCcCcCcEEEEEEEecC
Q 012736 163 KTITLEVESSDTIDNVKAKIQDKEGI------P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gi------p-----~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (457)
....++++ ..||.+|.+.+.+++.- . .....+..+|+....+.. .-+++|+.|.++...++
T Consensus 16 ~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgdev~i~PpvsG 87 (88)
T TIGR01687 16 KSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGDVVAIFPPVSG 87 (88)
T ss_pred ceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCCEEEEeCCCcC
Confidence 34667776 88999999999877531 1 122445567776654321 57889999987764443
No 250
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=48.94 E-value=26 Score=28.19 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=28.7
Q ss_pred eEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCC
Q 012736 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 342 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~ 342 (457)
+++...+|.+.++.|....+-.++++++-.++|++.
T Consensus 3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~ 38 (105)
T PF14847_consen 3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE 38 (105)
T ss_dssp EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence 566788999999999999999999999999999988
No 251
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=48.86 E-value=92 Score=23.06 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=53.3
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeE-EEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..+.|++......+-...++.+++|+..-- +.-+|.-++..+|-+.+-++.|+.+.+.-|-|=|
T Consensus 18 kvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGINP~qtAGnvflkhgselrliPRDrvG 82 (82)
T cd01766 18 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRLIPRDRVG 82 (82)
T ss_pred eEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccChhhcccceeeecCCEeeecccccCC
Confidence 466888888888888888999999987664 4567999999999999999999999998876633
No 252
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=48.37 E-value=56 Score=24.90 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCCCEEEEEecC--CccHHHHHHHHhhhcCCC
Q 012736 388 LTGKTITLEVES--SDTIDNVKAKIQDKEGIP 417 (457)
Q Consensus 388 ~~g~~~~l~v~~--~~tV~~lK~~i~~~~gip 417 (457)
..|.+..+.+++ +.+..+|++.|+...+++
T Consensus 7 y~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l~ 38 (81)
T cd06396 7 YNGESQSFLVSDSENTTWASVEAMVKVSFGLN 38 (81)
T ss_pred ECCeEEEEEecCCCCCCHHHHHHHHHHHhCCC
Confidence 456788889998 779999999999999999
No 253
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=48.19 E-value=33 Score=27.50 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=32.2
Q ss_pred EecCCccHHHHHHHHhhhcCCCCCC-eEEEEcCeecCCCCcccc
Q 012736 396 EVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 396 ~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~g~~L~d~~tL~~ 438 (457)
=|+.+.||+++...|..+..+++++ ..|+.++..+..+.|+++
T Consensus 38 Lvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 38 LVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHHH
T ss_pred EEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHHH
Confidence 3799999999999999999998876 445557755567777765
No 254
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=47.96 E-value=60 Score=24.70 Aligned_cols=33 Identities=30% Similarity=0.337 Sum_probs=28.6
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCC--CCCCeEEE
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGI--PPDQQRLI 424 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gi--p~~~q~l~ 424 (457)
..++.|++++|+.++-..+.+++++ .+....|+
T Consensus 18 ~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 18 YKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 7899999999999999999999999 45555663
No 255
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=47.95 E-value=1.2e+02 Score=22.92 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=26.5
Q ss_pred CCcEEEEEecccccHHHHHHHHhhhhCCC
Q 012736 9 TGKTITLEVESSDTIDNVKAKIQDKEGIP 37 (457)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~~~~ip 37 (457)
+|..-++.|.+++|..+|-..+.+|.++.
T Consensus 11 ~~~~kti~V~~~~t~~~Vi~~~l~k~~l~ 39 (87)
T cd01768 11 GGTYKTLRVSKDTTAQDVIQQLLKKFGLD 39 (87)
T ss_pred CccEEEEEECCCCCHHHHHHHHHHHhCCc
Confidence 36678899999999999999999999987
No 256
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=47.88 E-value=43 Score=27.59 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=38.8
Q ss_pred ecC-CchHHHHHHHHhhhh----CCCC------CceEEEEC-----------------Ceec---CCCCCccccCcCcCc
Q 012736 169 VES-SDTIDNVKAKIQDKE----GIPP------DQQRLIFA-----------------GKQL---EDGRTLADYNIQKES 217 (457)
Q Consensus 169 v~~-~~tV~~lK~~i~~~~----gip~------~~q~L~~~-----------------g~~L---~d~~tL~~y~i~~~~ 217 (457)
|+. +.||.+|++.+.+.. |+|| +...+.+. ...| +++.+|.++||.+..
T Consensus 22 vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~nET 101 (122)
T PF10209_consen 22 VDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVENET 101 (122)
T ss_pred CCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCccc
Confidence 665 889999988876543 4544 22333322 1356 778999999999999
Q ss_pred EEEEEEE
Q 012736 218 TLHLVLR 224 (457)
Q Consensus 218 ~i~l~~~ 224 (457)
.|.++..
T Consensus 102 EiSfF~~ 108 (122)
T PF10209_consen 102 EISFFNM 108 (122)
T ss_pred eeeeeCH
Confidence 9987654
No 257
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=47.26 E-value=1.5e+02 Score=23.83 Aligned_cols=74 Identities=27% Similarity=0.302 Sum_probs=47.6
Q ss_pred cEEEEEEccC-CcEEEEEEeCCCCHHHHHHHHhhhh----C--CCCC-CeEEEecCcc--ccccCcccccc-----cccC
Q 012736 76 GMQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKE----G--IPPD-QQRLIFAGKQ--LEDGRTLADYN-----IQKE 140 (457)
Q Consensus 76 ~~~i~vk~~~-g~~~~l~v~~~~tV~~lK~~i~~~~----g--ip~~-~q~L~~~g~~--L~d~~tl~~y~-----i~~~ 140 (457)
.+.|.|...+ ...+++.+++++|+.++.+.+-.+. + -+++ +-.|--.|+. |..+..|.+|. +..+
T Consensus 17 ~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~yIr~cl~~~ 96 (108)
T smart00144 17 KILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKMLSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFEYIRNCLKNG 96 (108)
T ss_pred eEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHHHhccccccCCCCcEEEEecCcEEEEeCCeeeechHHHHHHHhcC
Confidence 3445554433 3568999999999999998876651 1 2233 4455566754 55666777764 5667
Q ss_pred CcceeEEEe
Q 012736 141 STLHLVLRL 149 (457)
Q Consensus 141 s~i~l~~~~ 149 (457)
..++|.+..
T Consensus 97 ~~~~L~L~~ 105 (108)
T smart00144 97 REPHLVLMT 105 (108)
T ss_pred CCceEEEEe
Confidence 788877643
No 258
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=46.03 E-value=47 Score=26.04 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=38.8
Q ss_pred EEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe-------ecCCCC---cc--cccCCCCCCEEEEEEecCCC
Q 012736 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QLEDGR---TL--ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-------~L~d~~---tL--~~~~i~~~~~i~l~~r~~GG 456 (457)
+++....||.+|-..+++.. |...-+++..+- .|-|+. .+ .++-+++|+.|.+.-.+-||
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~GG 94 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHGG 94 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCCC
Confidence 33446779999999999886 333334443221 221222 23 36778999999998888887
No 259
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=46.01 E-value=68 Score=24.54 Aligned_cols=52 Identities=25% Similarity=0.394 Sum_probs=37.3
Q ss_pred eeEEEc-CCCCEEEEEecCCccHHHHHHHHhhhcCCCC--CCeEEE--E-cC--eecCCC
Q 012736 382 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLI--F-AG--KQLEDG 433 (457)
Q Consensus 382 ~i~v~~-~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~--~-~g--~~L~d~ 433 (457)
+|+... .++...++.|++++|..++-..+.++.+++. ....|+ . +| +.|.++
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~~~~~er~L~~~ 65 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVLPDGKERVLPDD 65 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEeCCcEEEEeCCC
Confidence 344433 3466789999999999999999999999975 345554 2 34 466654
No 260
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=45.28 E-value=57 Score=24.99 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=30.9
Q ss_pred eEEEEc-CCCcEEEEEecccccHHHHHHHHhhhhCCCCc
Q 012736 2 QIFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 39 (457)
Q Consensus 2 ~i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~ 39 (457)
.||... .++..-++.|.+++|+.++-..+.+|.++..+
T Consensus 6 rV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~ 44 (90)
T smart00314 6 RVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDD 44 (90)
T ss_pred EEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCC
Confidence 345544 44778889999999999999999999998753
No 261
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=44.27 E-value=72 Score=25.21 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=34.5
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec
Q 012736 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 122 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~ 122 (457)
++..+|.+.-+.|+.+.+..+|+.++.+..+++.. ..|.|.
T Consensus 17 l~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 17 LRYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 45678999999999999999999999999988875 555443
No 262
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.17 E-value=37 Score=32.84 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=42.6
Q ss_pred EEEeeCCCcHHHHHHHhhcccCCCCCCceEEe---cCe-----eccCCCcccccccccCceEEEE
Q 012736 318 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGK-----QLEDGRTLADYNIQKESTLHLV 374 (457)
Q Consensus 318 ~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~---~g~-----~L~d~~~l~~~~i~~~~~l~l~ 374 (457)
+..+...-||.|++..+..+-|+.+.+++|++ .|+ ..+.+..|.+|+|+.|+.+.+.
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L~eD~rt~~~ss~~~N~~L~~fkIedGDs~lvq 415 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLLREDGRTDDFSSSDYNMPLHYFKIEDGDSFLVQ 415 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEEcccCccCCccccCCCCcceEEeccCCCEeeee
Confidence 35666778999999999999999999999984 232 2344566777777777766554
No 263
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=43.55 E-value=91 Score=32.20 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=54.2
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCC------CCCCeEEEe-CCcccCCCccccccccCCCCeEEEEEee
Q 012736 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI------PPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~i------p~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
+|+|... .+.+.+.+..+-.|.++--.|.+..+- ++....|.- +|..++.++||.+.+|.+|+.++|..+.
T Consensus 4 RVtV~~~-~~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG~~L~L~p~~ 81 (452)
T TIGR02958 4 RVTVLAG-RRAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPDASLAEAGVRDGELLVLVPAS 81 (452)
T ss_pred EEEEeeC-CeeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCCCCHHHcCCCCCCeEEEeeCC
Confidence 3455443 345888889999999999888887753 233455553 6789999999999999999999998644
No 264
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=43.50 E-value=1.1e+02 Score=21.78 Aligned_cols=55 Identities=18% Similarity=0.331 Sum_probs=37.9
Q ss_pred eeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
++++...||.+|.+.+ +++.+...+..+|+....+ ...++-+.+|+.|.++.-..
T Consensus 9 ~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~~-~~~~~~L~~gD~V~ii~~v~ 63 (65)
T cd00565 9 REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPRS-EWASTPLQDGDRIEIVTAVG 63 (65)
T ss_pred EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCHH-HcCceecCCCCEEEEEEecc
Confidence 4455678899888766 4666677777888876442 33345689999998775443
No 265
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=43.08 E-value=1e+02 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.258 Sum_probs=28.0
Q ss_pred CCCCEEEEEecCCccHHHHHHHHhhhcCCCCC
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD 419 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~ 419 (457)
.++.-.++.++.++||+|+-..++.+..++..
T Consensus 10 ~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~ 41 (97)
T cd01775 10 SDGTFTTLSCPLNTTVSELIPQLAKKFYLPSG 41 (97)
T ss_pred cCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCC
Confidence 45666899999999999999999999988873
No 266
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=43.06 E-value=2.2e+02 Score=24.64 Aligned_cols=143 Identities=17% Similarity=0.153 Sum_probs=69.9
Q ss_pred cccCCCCeEEEEEeecCceeeEEEecCCcEEEEEe-----eCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCccc
Q 012736 287 YNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEV-----ESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLA 361 (457)
Q Consensus 287 ~~i~~~~tl~l~~~~~~~~~i~i~~~~g~~~~l~v-----~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~ 361 (457)
|-+.+||.|.+...-.+.+.-.+..-.+-++++.. -.+.|++++++.|++++. +
T Consensus 1 Y~l~pGD~l~i~v~~~~~~~~~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~------~--------------- 59 (165)
T TIGR03027 1 YVIGPGDSLNINVWRNPELSGSVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLA------K--------------- 59 (165)
T ss_pred CCcCCCCEEEEEEcCCcccccceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHH------H---------------
Confidence 44566666655544333333222222222233221 268899999999998853 0
Q ss_pred ccccccCceEEEEEEe-cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCC-CCCCeEEEE--cCe--ec-----
Q 012736 362 DYNIQKESTLHLVLRL-RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF--AGK--QL----- 430 (457)
Q Consensus 362 ~~~i~~~~~l~l~~~~-~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gi-p~~~q~l~~--~g~--~L----- 430 (457)
|=..+.-++.+..-. .....++|-..-.+.-.+.+.++.|+.++-...-....- ....-.+.- +|+ ..
T Consensus 60 -~~~~p~v~V~v~~~~~~~~~~V~V~GeV~~PG~y~~~~~~tl~~ai~~AGG~~~~a~~~~v~i~R~~~~~~~~~~idl~ 138 (165)
T TIGR03027 60 -YVRNPVVTVIVTGFIGPFSEQIRVVGAAANPQALPYREGMTLLDVMIAVGGLTDFADGNRAVIVRTVDGEQKQISVRLK 138 (165)
T ss_pred -hccCCeEEEEEeecccCCCcEEEEEEEeCCCceeeeCCCCcHHHHHHHcCCCCcccCCCeEEEEECCCCceEEEEEEHH
Confidence 000122222222110 123556665544334445567888888776654333221 122334443 232 11
Q ss_pred ---CCCCcccccCCCCCCEEEEEE
Q 012736 431 ---EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 431 ---~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+...=.+.-+++||+|++--
T Consensus 139 ~l~~~g~~~~n~~L~~gD~I~Vp~ 162 (165)
T TIGR03027 139 DLIKDGDVTANVELKPGDVLIIPE 162 (165)
T ss_pred HHhhcCCccCCceeCCCCEEEEec
Confidence 112222456688999998753
No 267
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=42.91 E-value=62 Score=26.70 Aligned_cols=74 Identities=16% Similarity=0.252 Sum_probs=47.4
Q ss_pred cCcEEEEEEccC---CcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccc---cccCCcceeEE
Q 012736 74 RGGMQIFVKTLT---GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN---IQKESTLHLVL 147 (457)
Q Consensus 74 ~~~~~i~vk~~~---g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~---i~~~s~i~l~~ 147 (457)
++.+.|.|+-.. .+..-+-|+.+.||+++..-|..+.++++++.-|+.++..+....++++.. -.++..+++..
T Consensus 25 PdrIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k~flfVnn~lp~~s~~mg~lYe~~KDeDGFLYi~Y 104 (121)
T PTZ00380 25 PGHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKKVTLAIEGSTPAVTATVGDIADACKRDDGFLYVSV 104 (121)
T ss_pred CCccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhHEEEEECCccCCccchHHHHHHHhcCCCCeEEEEE
Confidence 344555554321 233334699999999999999999999998843444555556666777642 23344555554
No 268
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=41.89 E-value=1.4e+02 Score=23.01 Aligned_cols=52 Identities=17% Similarity=0.244 Sum_probs=30.0
Q ss_pred CccHHHHHHHHhh-hcCCCC-C---CeEEEeCCc----ccCCCccccccccCCCCeEEEEE
Q 012736 248 SDTIDNVKAKIQD-KEGIPP-D---QQRLIFAGK----QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 248 ~~tV~~lK~~I~~-~~~ip~-~---~q~L~~~g~----~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..|++++-+.+.+ ++|+.. + ...++|... .-...++|+++||.+|+.+.+-.
T Consensus 8 ~~TL~~lv~~Vlk~~Lg~~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~gs~L~v~D 68 (87)
T PF14732_consen 8 KMTLGDLVEKVLKKKLGMNEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNGSILTVDD 68 (87)
T ss_dssp T-BHHHHHHHCCCCCS--SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT-EEEEEE
T ss_pred hCcHHHHHHHHHHhccCCCCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCCCEEEEEE
Confidence 3499999888654 677533 2 345555432 34558899999999999885544
No 269
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=41.72 E-value=36 Score=26.71 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=34.5
Q ss_pred eeecCCchHHHHHHHHhhhhCCCCCceEEEECC-------eecCCC---CCc--cccCcCcCcEEEEEEEecC
Q 012736 167 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQLEDG---RTL--ADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g-------~~L~d~---~tL--~~y~i~~~~~i~l~~~~~~ 227 (457)
++++...||.+|-+.+.+.+ |....+++..+ ..|-++ +.+ .++-+++|++|.++....+
T Consensus 23 ~~~~~~~tV~dll~~L~~~~--~~~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dgD~v~i~P~v~G 93 (94)
T cd01764 23 LDGEKPVTVGDLLDYVASNL--LEERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDGDHVVFISTLHG 93 (94)
T ss_pred ccCCCCCcHHHHHHHHHHhC--chhhhhhEecCCcccCCEEEEECCccccccCCcccCCCCcCEEEEECCCCC
Confidence 44446779999999998776 22233333222 122122 223 3577899999987765443
No 270
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=41.13 E-value=45 Score=27.13 Aligned_cols=58 Identities=14% Similarity=0.159 Sum_probs=39.8
Q ss_pred EEecCCccHHHHHHHHhhhcCCCCCCeE-EEEcCeecCCCCcccc---cCCCCCCEEEEEEe
Q 012736 395 LEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQLEDGRTLAD---YNIQKESTLHLVLR 452 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~~L~d~~tL~~---~~i~~~~~i~l~~r 452 (457)
+-|+.+.||+++...|..+.++++++-. |+.++.....+.++++ +.=.++.-|++...
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~~~lY~~~kd~DGfLyl~Ys 106 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYS 106 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHHHHHHHHhCCCCCEEEEEEe
Confidence 4599999999999999999999988754 4445544455555443 22233556777654
No 271
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=40.90 E-value=1.2e+02 Score=24.20 Aligned_cols=71 Identities=23% Similarity=0.398 Sum_probs=42.2
Q ss_pred eeeEEEcC-CCCEEEEEecCCccHHHHHHHHhhh--cCCCCC----CeEEEEcCe--ecCCCCcccccC-----CCCCCE
Q 012736 381 MQIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIPPD----QQRLIFAGK--QLEDGRTLADYN-----IQKEST 446 (457)
Q Consensus 381 ~~i~v~~~-~g~~~~l~v~~~~tV~~lK~~i~~~--~gip~~----~q~l~~~g~--~L~d~~tL~~~~-----i~~~~~ 446 (457)
+.|.|... .+..+++.|+.+.|+.+|...+-.+ .+..+. +..|--.|+ -|..+..|.+|. +..+-.
T Consensus 17 i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~ 96 (106)
T PF00794_consen 17 IKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKD 96 (106)
T ss_dssp EEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--
T ss_pred EEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCC
Confidence 44445444 5668999999999999999888877 222222 456655665 556777787773 234445
Q ss_pred EEEEE
Q 012736 447 LHLVL 451 (457)
Q Consensus 447 i~l~~ 451 (457)
++|.+
T Consensus 97 ~~L~L 101 (106)
T PF00794_consen 97 PHLVL 101 (106)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 55544
No 272
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=40.81 E-value=1.7e+02 Score=22.54 Aligned_cols=61 Identities=23% Similarity=0.375 Sum_probs=43.9
Q ss_pred EEEEEecCCccHHHHHHHHhhhc-C--CCC--C-CeEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 012736 392 TITLEVESSDTIDNVKAKIQDKE-G--IPP--D-QQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip~--~-~q~l~~~g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
...+-|+..+|+.++=++++... | +++ . ..++.++| ..+..+.++++.||.+-+.|.+...
T Consensus 16 ~~Lv~VDt~dTmdqVA~k~A~HsVGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~e~vev~~~ 84 (85)
T PF06234_consen 16 LQLVPVDTEDTMDQVAAKVAHHSVGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPMEWVEVRFE 84 (85)
T ss_dssp EEEEEEETT-BHHHHHHHHHTTTTTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TTEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHhhhhcceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcceEEEEEEc
Confidence 45678999999999999998764 3 333 2 45677888 8999999999999999999988754
No 273
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=40.64 E-value=86 Score=25.27 Aligned_cols=39 Identities=5% Similarity=0.194 Sum_probs=33.8
Q ss_pred eEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeec
Q 012736 164 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 202 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L 202 (457)
.-.+.|++++|++.+...+.+..++++..+.++|-+..-
T Consensus 46 ~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 46 KSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred cceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 446789999999999999999999999999988866544
No 274
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=40.54 E-value=96 Score=23.86 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=46.5
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCc----ccccCCCCCCEEE
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRT----LADYNIQKESTLH 448 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~t----L~~~~i~~~~~i~ 448 (457)
|.|-..+|...++.|+..+|+.++-..++.+.....+.-.-.+. .+.++|... |+..+....+.++
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvdvl~~W~~~~~n~l~ 81 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVEVLSTWHSAGNSVLF 81 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHHHHHhcccCCCcEEE
Confidence 44555778899999999999999999999999887766554442 345566653 4445554444443
No 275
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=40.00 E-value=85 Score=24.16 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=40.0
Q ss_pred EEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeE-EE------ecCccccccCcccc
Q 012736 79 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LI------FAGKQLEDGRTLAD 134 (457)
Q Consensus 79 i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-L~------~~g~~L~d~~tl~~ 134 (457)
|.|-..+|....+.|+...|++++-+.+..+.....+.-- |+ .-.+.++|+..+.+
T Consensus 5 vkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~P~l~lER~~EDHE~vvd 67 (85)
T cd01787 5 VKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHLPHLQLERLFEDHELVVE 67 (85)
T ss_pred EEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEecchhhhhhhccchHHHHH
Confidence 5566688999999999999999999999999886554322 21 11355666654444
No 276
>PRK07440 hypothetical protein; Provisional
Probab=39.38 E-value=1.5e+02 Score=21.67 Aligned_cols=62 Identities=16% Similarity=0.277 Sum_probs=40.5
Q ss_pred ceeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEE
Q 012736 304 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 304 ~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.|.|. .||+. .++....|+.+|-+ .+++++..--.-.+|..++-+. +.+.-++.++.+.+..
T Consensus 4 ~m~i~---vNG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r~~-w~~~~L~~gD~IEIv~ 65 (70)
T PRK07440 4 PITLQ---VNGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHRQF-WEQTQVQPGDRLEIVT 65 (70)
T ss_pred ceEEE---ECCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCHHH-cCceecCCCCEEEEEE
Confidence 35553 45765 45567889998854 4456665444557777775433 5677788888888764
No 277
>PF03671 Ufm1: Ubiquitin fold modifier 1 protein; InterPro: IPR005375 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin-like molecules (UBLs) can be divided into two subclasses: type-1 UBLs, which ligate to target proteins in a manner similar, but not identical, to the ubiquitylation pathway, such as SUMO, NEDD8, and UCRP/ISG15, and type-2 UBLs (also called UDPs, ubiquitin-domain proteins), which contain ubiquitin-like structure embedded in a variety of different classes of large proteins with apparently distinct functions, such as Rad23, Elongin B, Scythe, Parkin, and HOIL-1. This entry represents Ufm1 (ubiquitin-fold modifier), which is a ubiquitin-like protein with structural similarities to ubiquitin [, ]. Ufm1 is one of a number of ubiquitin-like modifiers that conjugate to target proteins in cells through Uba5 (E1) and Ufc1 (E2). The Ufm1-system is conserved in metazoa and plants, suggesting it has a potential role in multicellular organisms []. Human Ufm1 is synthesized as a precursor consisting of 85 amino-acid residues. Prior to activation by Uba5, the extra amino acids at the C-terminal region of Ufm1 are removed to expose Gly, which is necessary for conjugation to target molecule(s). C-terminal processing of Ufm1 requires two specific cysteine peptidases (IPR012462 from INTERPRO): UfSP1 and UfSP2; both peptidases are also able to release Ufm1 from Ufm1-conjugated cellular proteins. UfSP2 is present in most, if not all, of multi-cellular organisms including plant, nematode, fly, and mammal, whereas UfSP1 is not present in plants and nematodes []. For further information on ubiquitin, please see Protein of the Month [].; PDB: 1J0G_A 1WXS_A 1L7Y_A.
Probab=38.78 E-value=1e+02 Score=22.77 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=45.0
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccCCCCCCEEEE
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..+.|+++.....+-...++.+.+|+..--++- +|.-+...+|-.+.-++.|+.|.+
T Consensus 18 kv~sVPE~apftaVlkfaAeeF~vp~~tsaiItndG~GInP~QTag~vflKhGseLrl 75 (76)
T PF03671_consen 18 KVISVPEEAPFTAVLKFAAEEFKVPPATSAIITNDGVGINPQQTAGNVFLKHGSELRL 75 (76)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTS-SSSEEEEESSS-EE-TTSBHHHHHHHT-SEEEE
T ss_pred eEEecCCCCchHHHHHHHHHHcCCCCceEEEEecCCcccccchhhhhhHhhcCcEeee
Confidence 567899999888888888999999998876655 699999999988888888998876
No 278
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=37.76 E-value=66 Score=24.03 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=28.1
Q ss_pred CccHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCC
Q 012736 400 SDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGR 434 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~~~q~l--~~~g~~L~d~~ 434 (457)
-.+..+|+.+.+++.++|...-+| .-+|..++|+.
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEe 54 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEE 54 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHH
Confidence 358999999999999999655544 44899998775
No 279
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=36.95 E-value=17 Score=35.92 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.1
Q ss_pred ccCCcEEEEEEe-CCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcc
Q 012736 83 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 132 (457)
Q Consensus 83 ~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl 132 (457)
..+|....+.+. .++.+..+|+++.+..++++..|.+.+.|..|.|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 466777777777 67789999999999999999999999999999887443
No 280
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=36.17 E-value=78 Score=24.01 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=33.3
Q ss_pred CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 425 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~ 425 (457)
.+|.+.-+.++..-|-+.|+++|+..+.+|++..-+.|
T Consensus 7 ~~g~~RRf~~~~~pt~~~L~~kl~~Lf~lp~~~~~vtY 44 (82)
T cd06397 7 FLGDTRRIVFPDIPTWEALASKLENLYNLPEIKVGVTY 44 (82)
T ss_pred eCCceEEEecCCCccHHHHHHHHHHHhCCChhHeEEEE
Confidence 45667778888888999999999999999999888888
No 281
>PRK08453 fliD flagellar capping protein; Validated
Probab=35.82 E-value=1.1e+02 Score=33.35 Aligned_cols=86 Identities=22% Similarity=0.321 Sum_probs=48.5
Q ss_pred ecCCcEEEEEeeCCCcHHHHHHHhhccc-----------CCCCCCceEEecCeeccCC------CcccccccccCceEEE
Q 012736 311 TLTGKTITLEVESSDTIDNVKAKIQDKE-----------GIPPDQQRLIFAGKQLEDG------RTLADYNIQKESTLHL 373 (457)
Q Consensus 311 ~~~g~~~~l~v~~~~Tv~~lK~~I~~~~-----------~ip~~~q~l~~~g~~L~d~------~~l~~~~i~~~~~l~l 373 (457)
..+|++|+++|+..+|+++|+..|-+-. | ..+..+|++.+...-.+ .+|....++++. +.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~-~~~ 211 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNA-LSL 211 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcc-ccc
Confidence 3469999999999999999999998532 2 11112333333322111 122222222222 111
Q ss_pred -EEEecCceeeEEEcCCCCEEEEEec
Q 012736 374 -VLRLRGGMQIFVKTLTGKTITLEVE 398 (457)
Q Consensus 374 -~~~~~~~~~i~v~~~~g~~~~l~v~ 398 (457)
...-.+...|+++...|+.+.+.+.
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 237 (673)
T PRK08453 212 VDGSGKGDLSLNLKDADGNMHTVPIM 237 (673)
T ss_pred ccccccccceeeeeccCCcccccccc
Confidence 1112356889999888877766544
No 282
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=35.80 E-value=1.4e+02 Score=22.73 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=40.3
Q ss_pred CceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCccccccccCCCCeEEEEE
Q 012736 238 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 238 g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+..+.+...+..||+++-+ .+|+|..+--+++ ||+..+- +|-+++|+.+.+..
T Consensus 22 ~~~~~~~~~~~~tvkd~IE----sLGVP~tEV~~i~vNG~~v~~-----~~~~~~Gd~v~V~P 75 (81)
T PF14451_consen 22 GGPFTHPFDGGATVKDVIE----SLGVPHTEVGLILVNGRPVDF-----DYRLKDGDRVAVYP 75 (81)
T ss_pred CCceEEecCCCCcHHHHHH----HcCCChHHeEEEEECCEECCC-----cccCCCCCEEEEEe
Confidence 5678889999999998864 5799999866665 7776443 47788999987654
No 283
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.89 E-value=1e+02 Score=29.17 Aligned_cols=71 Identities=15% Similarity=0.255 Sum_probs=55.3
Q ss_pred cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecC---CCCCccccCcCcCcEEEE
Q 012736 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHL 221 (457)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~---d~~tL~~y~i~~~~~i~l 221 (457)
....+.|+.++|+++...+++..+...++.-|....+...+.+.|. |-...+. -.++|...++.+.+++.+
T Consensus 209 s~crlQiRl~DG~Tl~~tF~a~E~L~~VR~wVd~n~~~~~~P~~f~t~fPR~tf~edD~~KpLq~L~L~Psa~lil 284 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTLTQTFNARETLAAVRLWVDLNRGDGLDPYSFHTGFPRVTFTEDDELKPLQELDLVPSAVLIL 284 (290)
T ss_pred cceEEEEEcCCCCeeeeecCchhhHHHHHHHHHHhccCCCCCeeeecCCCceecccccccccHHHhccccchheec
Confidence 4577889999999999999999999999999999988777666664 3233332 247888888888777644
No 284
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=34.83 E-value=1.6e+02 Score=23.44 Aligned_cols=70 Identities=23% Similarity=0.395 Sum_probs=42.0
Q ss_pred eEEEEcc-CCceEEEEeecCccHHHHHHHHhhh--cCCC----CCCeEEEeCCcc--cCCCccccccc-----cCCCCeE
Q 012736 230 QIFVKTL-TGKTITLEVESSDTIDNVKAKIQDK--EGIP----PDQQRLIFAGKQ--LEDGRTLADYN-----IQKESTL 295 (457)
Q Consensus 230 ~i~v~~~-~g~~~~~~v~~~~tV~~lK~~I~~~--~~ip----~~~q~L~~~g~~--L~d~~tl~~~~-----i~~~~tl 295 (457)
.|.|... .+.++++.++.++|+.+|.+++-.+ .++. .+++.|.-.|+. |..+..|.+|. ++.+-.+
T Consensus 18 ~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~yIr~cl~~~~~~ 97 (106)
T PF00794_consen 18 KVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKDLLPPDPEDDYVLKVCGREEYLLGDHPLSQYEYIRQCLKRGKDP 97 (106)
T ss_dssp EEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHHTT-CHHHHGEEEEETTSSEEE-SSS-GGGBHHHHHHHHCT--E
T ss_pred EEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhhcCCcccccCEEEEecCceEEeeCCeeeeccHHHHHHHhcCCCc
Confidence 3444444 5678999999999999998887665 1221 226778777764 55667776664 4455555
Q ss_pred EEEE
Q 012736 296 HLVL 299 (457)
Q Consensus 296 ~l~~ 299 (457)
+|..
T Consensus 98 ~L~L 101 (106)
T PF00794_consen 98 HLVL 101 (106)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5543
No 285
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=34.61 E-value=49 Score=25.38 Aligned_cols=55 Identities=20% Similarity=0.291 Sum_probs=37.3
Q ss_pred EEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCee--------cC------CCCcccccCCCCCCEEEEE
Q 012736 395 LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LE------DGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 395 l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~--------L~------d~~tL~~~~i~~~~~i~l~ 450 (457)
++|+++.|+.+|-+.+++...+....=.+..+++. |+ =+++|.+. +.+|+.|.|+
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~k~LYm~~pp~Lee~Tr~NL~k~l~eL-~~~g~ei~Vt 69 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTANKTLYMQSPPSLEEATRPNLSKKLKEL-LSDGEEITVT 69 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSEEEEEESSSHHHHHHTGGGGSSBTTTT-HHSSEEEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCCceEEEeCCHHHHHHhhhhhhhhHHHH-hcCCCEEEEE
Confidence 57899999999999999985333333333333332 32 13689999 8899988875
No 286
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=34.53 E-value=1.3e+02 Score=23.35 Aligned_cols=65 Identities=15% Similarity=0.284 Sum_probs=43.4
Q ss_pred CCCEEEEEec-----CCccHHHHHHHHhhhcCCCC-CCeEEEEc---Ce--ecCCCCccc----c-cCCCCCCEEEEEEe
Q 012736 389 TGKTITLEVE-----SSDTIDNVKAKIQDKEGIPP-DQQRLIFA---GK--QLEDGRTLA----D-YNIQKESTLHLVLR 452 (457)
Q Consensus 389 ~g~~~~l~v~-----~~~tV~~lK~~i~~~~gip~-~~q~l~~~---g~--~L~d~~tL~----~-~~i~~~~~i~l~~r 452 (457)
.|..+-+.++ ++.+..+|+.+|++..++++ ....|.|. |. .|.++.-|. . +.-....++.+.++
T Consensus 8 ~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Dedgd~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v~ 87 (91)
T cd06398 8 GGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTDEDGDVVTLVDDNDLTDAIQYFCSGSRLNPLRIDVT 87 (91)
T ss_pred CCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEECCCCCEEEEccHHHHHHHHHHHhccCCCceEEEEEE
Confidence 4556667776 47899999999999999998 66677774 32 333333222 2 33446778877765
Q ss_pred c
Q 012736 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
+
T Consensus 88 ~ 88 (91)
T cd06398 88 V 88 (91)
T ss_pred E
Confidence 4
No 287
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=34.26 E-value=1.1e+02 Score=23.78 Aligned_cols=40 Identities=13% Similarity=0.295 Sum_probs=30.3
Q ss_pred cCCceEEEEeec-----CccHHHHHHHHhhhcCCCC-CCeEEEeCC
Q 012736 236 LTGKTITLEVES-----SDTIDNVKAKIQDKEGIPP-DQQRLIFAG 275 (457)
Q Consensus 236 ~~g~~~~~~v~~-----~~tV~~lK~~I~~~~~ip~-~~q~L~~~g 275 (457)
.+|...++.+.. +-+...|+++|.+.+++++ ....|.|.+
T Consensus 7 y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~D 52 (91)
T cd06398 7 YGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSLTYTD 52 (91)
T ss_pred eCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEEEEEC
Confidence 455566666664 5799999999999999988 456666654
No 288
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=34.24 E-value=1.3e+02 Score=22.37 Aligned_cols=61 Identities=16% Similarity=0.360 Sum_probs=38.6
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcC-CCCCCeEEEE------cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEG-IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~l~~------~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+.+.+-.+|+.|+.+|+..|.++.. +-|+..-+.- +|--|+.+.+.++. ...+++|.+.++
T Consensus 3 kKFLhlt~~~~tl~~L~~eI~~~f~kLYP~~~~~~I~~LQD~~~cDLD~d~~V~DV-f~~~~~vrvi~~ 70 (73)
T PF10407_consen 3 KKFLHLTDPNNTLSQLKEEIEERFKKLYPNEPELEILSLQDSDGCDLDPDFLVKDV-FNSNNVVRVILK 70 (73)
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHCCCCCCceEEEeecCCCCCCCcccEeeee-eccCCEEEEEec
Confidence 3466678999999999999999874 4444432221 23344444555554 336777777654
No 289
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=33.67 E-value=70 Score=24.97 Aligned_cols=39 Identities=21% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE-EEcCe
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL-IFAGK 428 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l-~~~g~ 428 (457)
...+++.|++..|=.++|..|+..+|+++..-+- ...|+
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 4589999999999999999999999999987753 34443
No 290
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=66 Score=25.90 Aligned_cols=40 Identities=8% Similarity=0.216 Sum_probs=33.6
Q ss_pred cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEc
Q 012736 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L 50 (457)
|.-.+.|.+++|+..+-..+++..+++++.|-.+|-....
T Consensus 45 K~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~sF 84 (116)
T KOG3439|consen 45 KKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNSF 84 (116)
T ss_pred ecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCcc
Confidence 4456789999999999999999999999998777755544
No 291
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=33.05 E-value=56 Score=35.60 Aligned_cols=52 Identities=21% Similarity=0.426 Sum_probs=42.8
Q ss_pred CCCEEEEEecC-CccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccC
Q 012736 389 TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYN 440 (457)
Q Consensus 389 ~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~~ 440 (457)
.|+..+++... ..|+++||.+|+.+.|+...+|.+.- +|..+..++.|+.|.
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~S 56 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEIS 56 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhc
Confidence 47777787774 56999999999999999999998765 577788888888775
No 292
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=32.81 E-value=57 Score=23.99 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=32.5
Q ss_pred ccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736 401 DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|+++|....++++|++ ..-.+.-+|-+++|=.. |.+|+.|++
T Consensus 26 ~SleeLl~ia~~kfg~~-~~~v~~~dgaeIdDI~~-----IRDgD~L~~ 68 (69)
T PF11834_consen 26 DSLEELLKIASEKFGFS-ATKVLNEDGAEIDDIDV-----IRDGDHLYL 68 (69)
T ss_pred ccHHHHHHHHHHHhCCC-ceEEEcCCCCEEeEEEE-----EEcCCEEEE
Confidence 79999999999999997 45556667777776443 345777765
No 293
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=32.67 E-value=1.8e+02 Score=20.59 Aligned_cols=58 Identities=17% Similarity=0.349 Sum_probs=37.6
Q ss_pred cCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEe
Q 012736 161 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 161 ~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (457)
+|+.+ ++....||.+|.+.+ +++++.-.+..+|+....+ ...++-+++|+.|.++.-.
T Consensus 4 Ng~~~--~~~~~~tv~~ll~~l----~~~~~~v~v~vN~~iv~~~-~~~~~~L~~gD~veii~~V 61 (64)
T TIGR01683 4 NGEPV--EVEDGLTLAALLESL----GLDPRRVAVAVNGEIVPRS-EWDDTILKEGDRIEIVTFV 61 (64)
T ss_pred CCeEE--EcCCCCcHHHHHHHc----CCCCCeEEEEECCEEcCHH-HcCceecCCCCEEEEEEec
Confidence 34443 445677899888755 5666666667888776322 2334678999999876543
No 294
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=31.95 E-value=77 Score=24.46 Aligned_cols=59 Identities=7% Similarity=0.081 Sum_probs=40.2
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeE-EEEcCeec-CCCCc---ccccCCCCCCEEEEEEe
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQL-EDGRT---LADYNIQKESTLHLVLR 452 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~~L-~d~~t---L~~~~i~~~~~i~l~~r 452 (457)
..+.|+.+.|++++...|..+.++++++-. |+.+..-+ ..+.+ |.++- .++.-|++...
T Consensus 18 ~kflv~~~~tv~~~~~~lrk~L~l~~~~slflyvnn~f~p~~d~~~g~LY~~~-~~dGfLyi~Ys 81 (87)
T cd01612 18 KVFKISATQSFQAVIDFLRKRLKLKASDSLFLYINNSFAPSPDENVGNLYRCF-GTNGELIVSYC 81 (87)
T ss_pred cEEEeCCCCCHHHHHHHHHHHhCCCccCeEEEEECCccCCCchhHHHHHHHhc-CCCCEEEEEEe
Confidence 345699999999999999999999887744 44454323 34444 44444 55666777653
No 295
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=31.85 E-value=84 Score=23.76 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=27.7
Q ss_pred CccHHHHHHHHhhhcCCCCCCeEE--EEcCeecCCCC
Q 012736 400 SDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLEDGR 434 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~~~q~l--~~~g~~L~d~~ 434 (457)
-.+..+|+.+.+++.++|...-++ .-+|.+++|+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEe 56 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEE 56 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHH
Confidence 358999999999999996555544 45899998775
No 296
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=31.85 E-value=86 Score=23.70 Aligned_cols=33 Identities=18% Similarity=0.305 Sum_probs=23.9
Q ss_pred EEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEe
Q 012736 241 ITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF 273 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~ 273 (457)
+.+.+..+.|+.++|+.+.+... -.++.|.+.+
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~ 42 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSC 42 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEE
T ss_pred eEEEccCcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEE
Confidence 57889999999999999887643 2566666665
No 297
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=31.59 E-value=3.1e+02 Score=23.59 Aligned_cols=111 Identities=23% Similarity=0.378 Sum_probs=69.4
Q ss_pred EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc----ceeEEEEec-CcEEEEEEccCC
Q 012736 12 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLR-GGMQIFVKTLTG 86 (457)
Q Consensus 12 ~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~s----ti~l~~~~~-~~~~i~vk~~~g 86 (457)
.|+-+.-.-+|.+.+=.+|.+-.|| .+.+.+|..|... --|+...+. .-+-++... ..+.+.|+. |
T Consensus 5 IfP~R~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~---VpyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G 75 (153)
T PF02505_consen 5 IFPHRLLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKT---VPYGPARGTPVNHPDRKVINVGGEEVELTVKV--G 75 (153)
T ss_pred EechhcCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCC---CCCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e
Confidence 3445556678999999999887776 5788899988642 134443332 222233322 245555542 2
Q ss_pred cEEEEEEeC-CCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccc
Q 012736 87 KTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (457)
Q Consensus 87 ~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~ 136 (457)
.+.+++.. .+.+..+++-..+...++-+ +..|+-+....|++||-
T Consensus 76 -ri~lele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY~ 121 (153)
T PF02505_consen 76 -RIILELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDYA 121 (153)
T ss_pred -EEEEEecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhhh
Confidence 46777877 66777777666655433322 23588899999999983
No 298
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=31.55 E-value=79 Score=23.62 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=30.3
Q ss_pred CCcHHHHHHHhhcccCCCCCCceEE--ecCeeccCCCccccc
Q 012736 324 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 363 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~l~~~ 363 (457)
..+.++|+.+..+++++|...-.++ -.|.+++|+.-+..+
T Consensus 18 A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGT~VddEeyF~tL 59 (74)
T smart00266 18 ASSLEELLSKVCDKLALPDSPVTLVLEEDGTIVDDEEYFQTL 59 (74)
T ss_pred cCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEEccHHHHhcC
Confidence 4689999999999999995444444 588888877655554
No 299
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=31.48 E-value=1.9e+02 Score=23.18 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=30.1
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCcccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLA 285 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~ 285 (457)
.+-|..+.||+++...|..+..+++++-.++| ++.....+.|+.
T Consensus 36 KfLvp~~~tv~qf~~~ir~rl~l~~~~alfl~Vn~~lp~~s~tm~ 80 (104)
T PF02991_consen 36 KFLVPKDLTVGQFVYIIRKRLQLSPEQALFLFVNNTLPSTSSTMG 80 (104)
T ss_dssp EEEEETTSBHHHHHHHHHHHTT--TTS-EEEEBTTBESSTTSBHH
T ss_pred EEEEcCCCchhhHHHHhhhhhcCCCCceEEEEEcCcccchhhHHH
Confidence 34578899999999999999999998744444 554445555553
No 300
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.35 E-value=60 Score=25.37 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=32.4
Q ss_pred CcEEEEEeeCCCcHHHHHHHhhcccCCCCCCce-EEecCe
Q 012736 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
.+++++.|++.+|=.++|+.|+..+++++..-+ +...|.
T Consensus 20 ~n~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~~~~gk 59 (92)
T PRK05738 20 QNKYVFEVAPDATKPEIKAAVEKLFGVKVESVNTLNVKGK 59 (92)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceeEEEEEEeCCc
Confidence 578999999999999999999999999997543 334443
No 301
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=30.77 E-value=26 Score=34.69 Aligned_cols=50 Identities=34% Similarity=0.564 Sum_probs=43.9
Q ss_pred ecCCcEEEEEee-CCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcc
Q 012736 311 TLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 360 (457)
Q Consensus 311 ~~~g~~~~l~v~-~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l 360 (457)
..+|+++.+.+. .+..+..+|.++....++++..|++.+.|..|+|+..+
T Consensus 289 ~~dg~~~~~~~~~~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 289 PADGQVIKITVQSLSENVASLKEKIADESQIPANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCCceeeeccccccccccccccccccccccchhheeeccCCcccCccccc
Confidence 457788887777 78889999999999999999999999999999888544
No 302
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=30.40 E-value=84 Score=23.69 Aligned_cols=33 Identities=12% Similarity=0.214 Sum_probs=30.2
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
..+++.|++..|=.++|..|+..+|+.+..-+-
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt 47 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNT 47 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 589999999999999999999999999887764
No 303
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.94 E-value=66 Score=24.24 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=28.9
Q ss_pred CcEEEEEeeCCCcHHHHHHHhhcccCCCCCCc
Q 012736 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 345 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q 345 (457)
.++|++.|++.+|=.++|+.|+..+++.+..-
T Consensus 14 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~V 45 (77)
T TIGR03636 14 ENKLTFIVDRKATKGDIKRAVEKLFDVKVEKV 45 (77)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEE
Confidence 46899999999999999999999999988753
No 304
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=29.75 E-value=58 Score=25.35 Aligned_cols=39 Identities=23% Similarity=0.408 Sum_probs=33.2
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcCCCCCCeE-EEEcCee
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 429 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~~ 429 (457)
..+++.|+++.|=.++|..|+..+|+++..-+ +.+.|+.
T Consensus 21 n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 21 NQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 57999999999999999999999999997765 4455553
No 305
>PRK08453 fliD flagellar capping protein; Validated
Probab=29.73 E-value=1.5e+02 Score=32.15 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=54.7
Q ss_pred ccCCceEEEEeecCccHHHHHHHHhhh-----------cCCCCCCeEEEeCCcccCCCccc------cccccCCCCeEEE
Q 012736 235 TLTGKTITLEVESSDTIDNVKAKIQDK-----------EGIPPDQQRLIFAGKQLEDGRTL------ADYNIQKESTLHL 297 (457)
Q Consensus 235 ~~~g~~~~~~v~~~~tV~~lK~~I~~~-----------~~ip~~~q~L~~~g~~L~d~~tl------~~~~i~~~~tl~l 297 (457)
...|++++++|.+..|+++|+.+|-+. .| ..+-|+|+..+...-.+..+ ..-.+..|.--.+
T Consensus 134 ~~~G~~~sIdi~~gtTL~~L~~~INd~~n~~V~Asiv~tG-~~~~y~L~l~s~etGa~n~I~~~~~~~~~~~~~~~~~~~ 212 (673)
T PRK08453 134 YTQGKDYAIDIKAGMTLGDVAQSITDATNGEVMGIVMKTG-GNDPYQLMINSKNTGEDNRIYFGSTLQSTLTNKNALSLV 212 (673)
T ss_pred EECCEEEEEEeCCCCcHHHHHHHhcCCCCCCeEEEEEecC-CCccEEEEEeccCcCCCceEEEeccccccccCCcccccc
Confidence 346999999999999999999999842 23 22248888877766544433 3333433331101
Q ss_pred EEeecCceeeEEEecCCcEEEEEe
Q 012736 298 VLRLRGGMQIFVKTLTGKTITLEV 321 (457)
Q Consensus 298 ~~~~~~~~~i~i~~~~g~~~~l~v 321 (457)
-.--.+...|++|.-+|+.+++.+
T Consensus 213 ~~~~~~~~~~~~~~~~g~~~~~~~ 236 (673)
T PRK08453 213 DGSGKGDLSLNLKDADGNMHTVPI 236 (673)
T ss_pred cccccccceeeeeccCCccccccc
Confidence 111244467888888888776554
No 306
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=27.34 E-value=1.2e+02 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=27.6
Q ss_pred ccHHHHHHHHhhhcCCCCCCe--EEEEcCeecCCCC
Q 012736 401 DTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGR 434 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q--~l~~~g~~L~d~~ 434 (457)
.+..||+.+.++..+++...- .|.-+|..++++.
T Consensus 21 ~sL~EL~~K~~~~l~~~~~~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 21 SSLQELISKTLDALVITSGLVTLVLEEDGTVVDTEE 56 (78)
T ss_pred cCHHHHHHHHHHHhCCCCCCcEEEEeCCCCEEccHH
Confidence 589999999999999986544 4456899998775
No 307
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=27.27 E-value=98 Score=33.83 Aligned_cols=62 Identities=18% Similarity=0.380 Sum_probs=47.7
Q ss_pred CCceEEEEeecC-ccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCccccccccC--CCCeEEEE
Q 012736 237 TGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQ--KESTLHLV 298 (457)
Q Consensus 237 ~g~~~~~~v~~~-~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl~~~~i~--~~~tl~l~ 298 (457)
.|.+.++..+.. .|+.+||.+|+.+.|+....+.|+- +|.-|..++.+..|.-. +.+.++++
T Consensus 3 rGqaltFDleaetqT~adLk~aiqke~~~aIq~~tfl~egGecmaadkrl~e~StaGTdTnPiffF 68 (1424)
T KOG4572|consen 3 RGQALTFDLEAETQTFADLKDAIQKEVGHAIQDLTFLDEGGECMAADKRLAEISTAGTDTNPIFFF 68 (1424)
T ss_pred CCceeEEeecceeehHHHHHHHHHHHhchhhceeeeeecCCcCcccccchhhhccccCCCCceEEe
Confidence 467777777644 4999999999999999998888775 56678889999888744 33456555
No 308
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=26.98 E-value=1.4e+02 Score=22.64 Aligned_cols=48 Identities=21% Similarity=0.433 Sum_probs=33.4
Q ss_pred CcHHHHHHHhhcccCCCCCCceEE--ecCeeccCCCcccccccccCceEEEEE
Q 012736 325 DTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 325 ~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~l~~~~i~~~~~l~l~~ 375 (457)
.+.+||+.+..++++++...-.|+ -.|.+.+|+.-+..+ + .+|..+..
T Consensus 21 ~sL~eL~~K~~~~l~~~~~~~~lvL~eDGT~VddEeyF~tL--p-~nT~lm~L 70 (78)
T PF02017_consen 21 SSLEELLEKACDKLQLPEEPVRLVLEEDGTEVDDEEYFQTL--P-DNTVLMLL 70 (78)
T ss_dssp SSHHHHHHHHHHHHT-SSSTCEEEETTTTCBESSCHHHCCS--S-SSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCcCcEEEEeCCCcEEccHHHHhhC--C-CCCEEEEE
Confidence 689999999999999997655666 478888877655554 3 34444443
No 309
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=25.86 E-value=1.1e+02 Score=23.15 Aligned_cols=35 Identities=17% Similarity=0.248 Sum_probs=27.6
Q ss_pred CccHHHHHHHHhhhcCCCC----CCeEEEEcCeecCCCC
Q 012736 400 SDTIDNVKAKIQDKEGIPP----DQQRLIFAGKQLEDGR 434 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~----~~q~l~~~g~~L~d~~ 434 (457)
-.+..+|+.+.+++.++|. ....|.-+|.+++|+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~~~lvL~eDGT~VddEe 58 (80)
T cd06536 20 ASSLEELRIKACESLGFDSSSAPITLVLAEDGTIVEDED 58 (80)
T ss_pred cCCHHHHHHHHHHHhCCCCCCCceEEEEecCCcEEccHH
Confidence 3589999999999999983 3344556899998775
No 310
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=25.79 E-value=96 Score=23.63 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=28.4
Q ss_pred eEEEEeecCccHHHHHHHHhhhcCC-CCCCeEEEe
Q 012736 240 TITLEVESSDTIDNVKAKIQDKEGI-PPDQQRLIF 273 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~i-p~~~q~L~~ 273 (457)
.-++.|.++.|.++|=+++..++++ .|+.+.|.+
T Consensus 15 ~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl 49 (87)
T cd01776 15 GKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFL 49 (87)
T ss_pred eeeeecCCCCcHHHHHHHHHHHhccCChhheeEEE
Confidence 3458899999999999999999998 677777654
No 311
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.78 E-value=40 Score=34.12 Aligned_cols=52 Identities=25% Similarity=0.265 Sum_probs=46.0
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES 445 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~ 445 (457)
.++++.+-|=.++...|+++.||+..+.+.+-+|+.|.-.+||++-|++..-
T Consensus 53 l~k~sL~i~Gselqa~iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq 104 (568)
T KOG2561|consen 53 LKKCSLHITGSELQALIAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQ 104 (568)
T ss_pred hhhcccccccHHHHHHHHHHcCCchhhhheeeccceeecccchhhhhhhhhh
Confidence 4566777788999999999999999999999999999999999999987543
No 312
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=25.18 E-value=1.5e+02 Score=20.92 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=36.4
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeE
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l 69 (457)
|.|.+++|+... ++.+.|+.++...|....+-..- .-..+|+..+- +|.+.+++++.+
T Consensus 1 I~v~lpdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~--~A~Vng~~vdl-----~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYLPDGSIKE--LPEGSTVLDVAYSIHSSLAKRAV--AAKVNGQLVDL-----DHPLEDGDVVEI 58 (60)
T ss_dssp EEEEETTSCEEE--EETTBBHHHHHHHHSHHHHHCEE--EEEETTEEEET-----TSBB-SSEEEEE
T ss_pred CEEECCCCCeee--CCCCCCHHHHHHHHCHHHHhhee--EEEEcCEECCC-----CCCcCCCCEEEE
Confidence 566779998876 67778899999999876542211 12356665543 444555555544
No 313
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.14 E-value=1.2e+02 Score=23.28 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.7
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
...+++.|++..+=.++|..|+..+|+++..-+-
T Consensus 21 ~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT 54 (84)
T PRK14548 21 ENKLTFIVDRRATKPDIKRAVEELFDVKVEKVNT 54 (84)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceEEEEe
Confidence 3589999999999999999999999999987764
No 314
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=24.88 E-value=2.7e+02 Score=23.89 Aligned_cols=109 Identities=23% Similarity=0.376 Sum_probs=69.9
Q ss_pred eeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCc----eEEEEEEe-cCceeeEEEcCCCCEEEE
Q 012736 321 VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRL-RGGMQIFVKTLTGKTITL 395 (457)
Q Consensus 321 v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~----~l~l~~~~-~~~~~i~v~~~~g~~~~l 395 (457)
+-.-+|.+.|=..|.+..|| .+.+.+|..|.... .||...|. .-+-.... ...+.+.|+. | .+.+
T Consensus 10 ~L~peTtEklLN~l~~i~GI----~R~vi~Gp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~v--G-ri~l 79 (153)
T PF02505_consen 10 LLKPETTEKLLNELYSIEGI----RRVVIHGPRLPKTV---PYGPARGTPVNHPDRKVINVGGEEVELTVKV--G-RIIL 79 (153)
T ss_pred cCCHHHHHHHHHHHhccCCE----EEEEEECCCCCCCC---CCCCCCCCcCCCCcceEEEECCEEEEEEEEE--e-EEEE
Confidence 34567888888888887664 46677887776544 45554333 22222211 3456666664 4 3778
Q ss_pred EecC-CccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCC
Q 012736 396 EVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 444 (457)
Q Consensus 396 ~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~ 444 (457)
++.. .+.+..+++...+...++-+ +..|+-+....|+.|| ++.|
T Consensus 80 ele~~~~~ie~I~~iCee~lpf~y~----i~~G~f~r~~~TvtDY-~KyG 124 (153)
T PF02505_consen 80 ELEDEEDVIEKIREICEEVLPFGYD----IKEGKFIRTKPTVTDY-AKYG 124 (153)
T ss_pred EecCcHHHHHHHHHHHHHhCCCceE----eeeeEEeccCCchhhh-hhcC
Confidence 8888 78888888888876633322 2369999999999998 3333
No 315
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=24.81 E-value=90 Score=23.96 Aligned_cols=32 Identities=13% Similarity=0.251 Sum_probs=29.1
Q ss_pred CCcEEEEEeeCCCcHHHHHHHhhcccCCCCCC
Q 012736 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~ 344 (457)
+.+++++.|++.+|=.++|+.|+..+++++..
T Consensus 20 ~~n~y~F~V~~~anK~eIK~AvE~lf~VkV~~ 51 (84)
T PRK14548 20 KENKLTFIVDRRATKPDIKRAVEELFDVKVEK 51 (84)
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCceEE
Confidence 34689999999999999999999999998874
No 316
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=24.62 E-value=1.7e+02 Score=29.52 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=62.9
Q ss_pred cceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEE--EECCeecCC---CCCccccCcCcCcEEEEEEEe
Q 012736 151 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL--IFAGKQLED---GRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L--~~~g~~L~d---~~tL~~y~i~~~~~i~l~~~~ 225 (457)
+...+.|+.++|..++-..+.++-...++.-+...-++......| .|-.|+..+ .++|.+..+.+...+.++.+.
T Consensus 313 d~~rLqiRLPdGssfte~Fps~~vL~~vr~yvrq~~~i~~g~f~LatpyPRReft~eDy~KtllEl~L~psaalvvlpk~ 392 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFTEKFPSTSVLRMVRDYVRQNQTIGLGAFDLATPYPRREFTDEDYDKTLLELRLFPSAALVVLPKK 392 (506)
T ss_pred ceeEEEEecCCccchhhcCCcchHHHHHHHHHHhcccccccceeeccccccccccchhhhhhHHHhccCCcceEEEEecC
Confidence 557888899999999999999999999999999888777777666 366676643 479999999999998877776
Q ss_pred cCC
Q 012736 226 RGG 228 (457)
Q Consensus 226 ~~~ 228 (457)
+..
T Consensus 393 r~t 395 (506)
T KOG2507|consen 393 RAT 395 (506)
T ss_pred Ccc
Confidence 543
No 317
>TIGR00038 efp translation elongation factor P. function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.
Probab=23.91 E-value=87 Score=27.96 Aligned_cols=86 Identities=21% Similarity=0.274 Sum_probs=46.5
Q ss_pred EEEEc-CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeecc--EEccCCCcccccccccccceeEEEEecCcEEE
Q 012736 3 IFVKT-LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (457)
Q Consensus 3 i~~~~-~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g--~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i 79 (457)
+-+++ .+|+.+.-..+.+|.++.. .--..+.|.|+.+| ..+-|..+.++|.+..+.--.-..-+.++|.+
T Consensus 38 vk~knL~tG~~~e~~f~~~~kve~~-------~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~v 110 (184)
T TIGR00038 38 VKLKNLLTGKVLEKTFRSGEKVEKA-------DVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEV 110 (184)
T ss_pred EEEEECCCCCEEEEEeCCCCEEEcc-------cEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCEE
Confidence 33443 4677766666666633322 11123456777766 33445556666766543211111224567778
Q ss_pred EEEccCCcEEEEEEeC
Q 012736 80 FVKTLTGKTITLEVES 95 (457)
Q Consensus 80 ~vk~~~g~~~~l~v~~ 95 (457)
.|...+|+.+.++++.
T Consensus 111 ~v~~~~~~~i~v~lP~ 126 (184)
T TIGR00038 111 SVTFYNGEPIGVELPN 126 (184)
T ss_pred EEEEECCEEEEEECCC
Confidence 8877777776666543
No 318
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.42 E-value=1.4e+02 Score=29.88 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=34.7
Q ss_pred CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEc
Q 012736 8 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL 50 (457)
Q Consensus 8 ~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L 50 (457)
++|.++++++..|||-+.+-+-+..+.|.| .+.+.|-|-.|
T Consensus 115 png~~i~i~~~~s~tt~~vl~~v~~kl~l~--~e~i~~f~lFl 155 (407)
T KOG3784|consen 115 PNGEKITINCLVSDTASLVLKSVCRKLGLP--DELIGYFGLFL 155 (407)
T ss_pred cCCceEEEEEEecccHHHHHHHHHhhcCCc--hHhhhheeeeE
Confidence 999999999999999999999999999998 34455545554
No 319
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=23.31 E-value=7.7e+02 Score=24.76 Aligned_cols=140 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred ccccCCCCeEEEEEeecCceee------------EEEecCCcEEEEEee----CCCcHHHHHHHhhcccCCCCCCceEEe
Q 012736 286 DYNIQKESTLHLVLRLRGGMQI------------FVKTLTGKTITLEVE----SSDTIDNVKAKIQDKEGIPPDQQRLIF 349 (457)
Q Consensus 286 ~~~i~~~~tl~l~~~~~~~~~i------------~i~~~~g~~~~l~v~----~~~Tv~~lK~~I~~~~~ip~~~q~l~~ 349 (457)
+|-|..||.|.+...-++.... +....+|...--.+- .+.|+.++++.|..+
T Consensus 84 ~Y~igpGDvL~I~V~~~peL~~~~~~~~~~~~~g~~V~~dG~I~~P~vG~V~vaG~T~~e~~~~I~~~------------ 151 (379)
T PRK15078 84 EYRVGPGDVLNVTVWDHPELTTPAGQYRSASDTGNWVHADGTIFYPYIGKVHVAGKTVTEIRSDITGR------------ 151 (379)
T ss_pred CcEECCCCEEEEEEecCcccccccccccccccCCCEECCCCeEeeccCceEEECCCCHHHHHHHHHHH------------
Q ss_pred cCeeccCCCcccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecC-CccHHHHHHHHhhhc-CCCCCCeEEEEcC
Q 012736 350 AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SDTIDNVKAKIQDKE-GIPPDQQRLIFAG 427 (457)
Q Consensus 350 ~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~tV~~lK~~i~~~~-gip~~~q~l~~~g 427 (457)
|+.|-..+.-++.+. ...+.+|+|...-.+.=.+.+.+ ..|+.++-.+.-... .-....-.|..+|
T Consensus 152 ----------L~~~~~~PqV~V~v~--~~~s~~V~V~GeV~~PG~~~l~~~~~tlldaIa~AGG~~~~a~~~~V~l~R~g 219 (379)
T PRK15078 152 ----------LAKYIESPQVDVNIA--AFRSQKAYVTGEVNKSGQQAITNVPLTILDAINAAGGLTDDADWRNVVLTHNG 219 (379)
T ss_pred ----------HHHhccCCeEEEEEc--cCCceEEEEEceecCCeEEEecCCCccHHHHHHHccCCCcccccceEEEEECC
Q ss_pred ee--------cCCCCcccccCCCCCCEEEE
Q 012736 428 KQ--------LEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 428 ~~--------L~d~~tL~~~~i~~~~~i~l 449 (457)
+. +.+...-.+.-+++||+|++
T Consensus 220 ~~~~i~l~~ll~~g~~~~ni~L~~GDvI~V 249 (379)
T PRK15078 220 KEERISLQALMQNGDLSQNRLLYPGDILYV 249 (379)
T ss_pred eEEEEEHHHHHhcCCcccCceeCCCCEEEE
No 320
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=23.08 E-value=1.5e+02 Score=22.46 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=27.3
Q ss_pred CccHHHHHHHHhhhcCCCC-CCeEEEEcCeecCCCC
Q 012736 400 SDTIDNVKAKIQDKEGIPP-DQQRLIFAGKQLEDGR 434 (457)
Q Consensus 400 ~~tV~~lK~~i~~~~gip~-~~q~l~~~g~~L~d~~ 434 (457)
-.+..+|+.+.+++.+++. ....|.-+|..++|+.
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 20 ADSLEDLLNKVLDALLLDCISSLVLDEDGTGVDTEE 55 (79)
T ss_pred cCCHHHHHHHHHHHcCCCCccEEEEecCCcEEccHH
Confidence 3589999999999999963 2245556899998775
No 321
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=23.02 E-value=71 Score=24.86 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=33.0
Q ss_pred CcEEEEEeeCCCcHHHHHHHhhcccCCCCCCce-EEecCee
Q 012736 314 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGKQ 353 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~~ 353 (457)
...+++.|++++|=.|+|+.|+..+|+++..-+ +.+.|..
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~ 60 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKK 60 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCc
Confidence 467999999999999999999999999997533 4466553
No 322
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=22.98 E-value=3e+02 Score=22.38 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=32.6
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|..+.||+++...|..+..+++++-.++|-+..+ ..+.++
T Consensus 44 KflVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn~~~p~~~~~~ 87 (112)
T cd01611 44 KYLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVNNSLPPTSATM 87 (112)
T ss_pred eEEecCCCCHHHHHHHHHHHhCCCccceEEEEECCccCCchhHH
Confidence 3568999999999999999999999986666644333 445444
No 323
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=22.90 E-value=90 Score=23.58 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=17.6
Q ss_pred EEEEeeCCCcHHHHHHHhhcc
Q 012736 317 ITLEVESSDTIDNVKAKIQDK 337 (457)
Q Consensus 317 ~~l~v~~~~Tv~~lK~~I~~~ 337 (457)
++++++.++|+.++|+.+.+.
T Consensus 2 i~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 2 IPLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEEETT-BHHHHHHHHHHH
T ss_pred eEEEccCcCcHHHHHHHHHHH
Confidence 568999999999999998765
No 324
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=22.66 E-value=2.8e+02 Score=21.88 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.0
Q ss_pred EEccCCceEEEEeecCccHHHHHHHHhhhcCCCC-CCeEEE
Q 012736 233 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLI 272 (457)
Q Consensus 233 v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~~q~L~ 272 (457)
|--.++...++.+..+.||++|-.++..++.++. ..++|.
T Consensus 7 IFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~ 47 (97)
T cd01775 7 VFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLS 47 (97)
T ss_pred EEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEE
Confidence 3345566677889999999999999999999866 445554
No 325
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=21.88 E-value=1.4e+02 Score=22.59 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=30.0
Q ss_pred CCcHHHHHHHhhcccCCCCCCceEE--ecCeeccCCCccccc
Q 012736 324 SDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLEDGRTLADY 363 (457)
Q Consensus 324 ~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~d~~~l~~~ 363 (457)
..+.++|+.+..+++++|...-.++ -.|.+++|+.-+..+
T Consensus 20 A~sL~eL~~K~~~~l~l~~~~~~lvL~eDGTeVddEeYF~tL 61 (78)
T cd01615 20 ASSLEELLSKACEKLKLPSAPVTLVLEEDGTEVDDEEYFQTL 61 (78)
T ss_pred cCCHHHHHHHHHHHcCCCCCCeEEEEeCCCcEEccHHHHhcC
Confidence 4589999999999999975444444 578888877755554
No 326
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=21.34 E-value=2.1e+02 Score=28.19 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=48.2
Q ss_pred EEEEecCCccHHHHHHHHhhhc--------------C-CCCCCeEEEEcCeecCCCCcccc---cCCCCCCEEEEEEecC
Q 012736 393 ITLEVESSDTIDNVKAKIQDKE--------------G-IPPDQQRLIFAGKQLEDGRTLAD---YNIQKESTLHLVLRLR 454 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~--------------g-ip~~~q~l~~~g~~L~d~~tL~~---~~i~~~~~i~l~~r~~ 454 (457)
.-|..+..-.|..++..|+++. . -|.+...|+|+|+.|.++.||+- +=.+.+.-|.|..|..
T Consensus 250 ~rL~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr~~~WK~~~di~L~YR~k 329 (331)
T PF11816_consen 250 SRLNAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVRTFIWKSSGDIVLHYRRK 329 (331)
T ss_pred ceecccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHHHhhccCCCeEEEEEEec
Confidence 3466666678888888888887 2 56677789999999999987665 4467788888888876
Q ss_pred C
Q 012736 455 G 455 (457)
Q Consensus 455 G 455 (457)
|
T Consensus 330 ~ 330 (331)
T PF11816_consen 330 G 330 (331)
T ss_pred C
Confidence 5
No 327
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=21.22 E-value=76 Score=26.57 Aligned_cols=27 Identities=19% Similarity=0.352 Sum_probs=23.1
Q ss_pred cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 426 AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 426 ~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+-+..+|++||++++++-|+-|++.+.
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~ 136 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAIT 136 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEec
Confidence 445668899999999999999999875
No 328
>CHL00030 rpl23 ribosomal protein L23
Probab=21.19 E-value=1.2e+02 Score=23.68 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=30.2
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
...+++.|+++.|=.++|..|+..+|+.+..-+-
T Consensus 19 ~n~y~F~V~~~anK~eIK~avE~lf~VkV~~VNt 52 (93)
T CHL00030 19 KNQYTFDVDSGSTKTEIKHWIELFFGVKVIAVNS 52 (93)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCeEEEEEE
Confidence 3589999999999999999999999998877653
No 329
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=20.90 E-value=5.4e+02 Score=22.06 Aligned_cols=110 Identities=21% Similarity=0.369 Sum_probs=67.0
Q ss_pred EEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccccc----ceeEEEEec-CcEEEEEEccCCc
Q 012736 13 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKES----TLHLVLRLR-GGMQIFVKTLTGK 87 (457)
Q Consensus 13 ~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~s----ti~l~~~~~-~~~~i~vk~~~g~ 87 (457)
|+-++-..+|.+.+=.++.+-.|| .+.+.+|..|...- -|+...+. .-+-.+... ..+.+.|+. |
T Consensus 5 fP~R~L~~eTtEklLN~l~~i~gI----~R~vIhGp~LPk~V---pyGPa~G~pv~h~~Rk~I~V~g~~veL~V~V--G- 74 (150)
T TIGR03260 5 FPHRLLKAETTEKLLNKLYDLDGI----LRVVIHGQRLPKKV---PYGPARGLPVNHPDRKTIRVKGEDVELRVQV--G- 74 (150)
T ss_pred echhhCCHHHHHHHHHHhhccCCE----EEEEEECCCCCCCC---CCCcccCCCCCCCcceEEEECCEEEEEEEEE--e-
Confidence 444555668888888888877766 57888898886531 23333332 222222222 245555542 2
Q ss_pred EEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccc
Q 012736 88 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 136 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~ 136 (457)
.+-+++...+.+.++++-..+...++-+ +..|+-+.+..|++||-
T Consensus 75 rI~le~~~~~~i~~I~eiC~e~~pF~y~----i~~g~f~r~~~TvtDY~ 119 (150)
T TIGR03260 75 RIILELEDEDIVEEIEEICKEMLPFGYE----VRVGKFLRTKPTVTDYI 119 (150)
T ss_pred EEEEEecCHHHHHHHHHHHHhhCCCceE----eeeeeEeecCCchhhhh
Confidence 4566777777788877776655543332 24477888899999984
No 330
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=20.61 E-value=1.7e+02 Score=26.36 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=32.0
Q ss_pred cccc-ccccceeEEEEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhh
Q 012736 58 DYNI-QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 110 (457)
Q Consensus 58 ~y~i-~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~ 110 (457)
+++. ..++|+|++-.--++-.|.. ...+.|.+.||.++|.++|.+.+
T Consensus 126 ~aG~k~sG~TVH~V~e~vD~GpII~------Q~~Vpv~~~Dt~etl~~RV~~~E 173 (200)
T COG0299 126 EAGVKVSGCTVHFVTEGVDTGPIIA------QAAVPVLPGDTAETLEARVLEQE 173 (200)
T ss_pred HcCCCccCcEEEEEccCCCCCCeEE------EEeeeecCCCCHHHHHHHHHHHH
Confidence 3444 37888888765322223333 23678999999999999998765
Done!