Query 012736
Match_columns 457
No_of_seqs 498 out of 3036
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 15:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012736.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012736hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 100.0 3.9E-35 1.3E-39 257.3 18.5 153 305-457 3-158 (159)
2 3rt3_B Ubiquitin-like protein 100.0 2.7E-35 9.3E-40 258.3 17.1 152 1-152 3-157 (159)
3 3u30_A Ubiquitin, linear DI-ub 100.0 1.8E-34 6E-39 256.3 17.5 155 302-456 18-172 (172)
4 3u30_A Ubiquitin, linear DI-ub 100.0 1.3E-34 4.4E-39 257.1 16.1 152 1-152 21-172 (172)
5 3b08_A Polyubiquitin-C, ubiqui 100.0 1.4E-32 4.8E-37 239.4 18.8 152 305-456 1-152 (152)
6 3b08_A Polyubiquitin-C, ubiqui 100.0 1.2E-32 3.9E-37 239.9 17.7 152 1-152 1-152 (152)
7 3phx_B Ubiquitin-like protein 99.8 1.3E-19 4.3E-24 138.9 10.5 77 379-455 3-79 (79)
8 3plu_A Ubiquitin-like modifier 99.8 1.8E-19 6E-24 138.6 10.0 79 373-451 14-92 (93)
9 4fbj_B NEDD8; effector-HOST ta 99.8 1.5E-19 5.1E-24 141.3 9.2 77 381-457 1-77 (88)
10 3plu_A Ubiquitin-like modifier 99.8 1.9E-19 6.5E-24 138.4 8.5 70 1-70 22-91 (93)
11 1ndd_A NEDD8, protein (ubiquit 99.8 6.5E-19 2.2E-23 133.8 9.8 76 381-456 1-76 (76)
12 2uyz_B Small ubiquitin-related 99.8 3.9E-19 1.3E-23 136.1 8.3 77 380-456 3-79 (79)
13 3dbh_I NEDD8; cell cycle, acti 99.8 4.9E-19 1.7E-23 138.6 9.0 79 378-456 10-88 (88)
14 4eew_A Large proline-rich prot 99.8 9.3E-19 3.2E-23 137.0 9.3 88 364-452 1-88 (88)
15 4hcn_B Polyubiquitin, ubiquiti 99.8 8.5E-19 2.9E-23 139.9 9.3 79 378-456 20-98 (98)
16 1wyw_B Ubiquitin-like protein 99.8 8.2E-19 2.8E-23 139.6 8.9 79 378-456 19-97 (97)
17 3n3k_B Ubiquitin; hydrolase, p 99.8 1.1E-18 3.6E-23 135.7 9.0 79 379-457 2-80 (85)
18 1wh3_A 59 kDa 2'-5'-oligoadeny 99.8 1.5E-18 5.1E-23 135.5 9.9 80 378-457 5-84 (87)
19 3a9j_A Ubiquitin; protein comp 99.8 1.8E-18 6.2E-23 131.3 10.1 76 381-456 1-76 (76)
20 1sif_A Ubiquitin; hydrophobic 99.8 1.2E-18 4E-23 136.2 9.1 79 379-457 8-86 (88)
21 3phx_B Ubiquitin-like protein 99.8 1.4E-18 4.6E-23 133.1 9.0 75 1-75 5-79 (79)
22 3k9o_B Ubiquitin, UBB+1; E2-25 99.8 2.4E-18 8.3E-23 136.9 10.0 78 380-457 1-78 (96)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.8 2.7E-18 9.1E-23 133.4 9.9 78 379-456 2-79 (85)
24 2l7r_A Ubiquitin-like protein 99.8 2E-18 6.8E-23 136.2 8.3 77 378-456 17-93 (93)
25 2kan_A Uncharacterized protein 99.8 3.4E-18 1.2E-22 135.0 9.6 79 378-457 13-92 (94)
26 2hj8_A Interferon-induced 17 k 99.7 2.1E-18 7.1E-23 134.8 8.0 78 379-456 3-80 (88)
27 2kdi_A Ubiquitin, vacuolar pro 99.7 2E-19 6.7E-24 147.3 2.1 104 74-177 7-113 (114)
28 4fbj_B NEDD8; effector-HOST ta 99.7 2.9E-18 9.8E-23 134.0 8.5 77 1-77 1-77 (88)
29 3vdz_A Ubiquitin-40S ribosomal 99.7 5.4E-18 1.8E-22 138.2 10.3 78 379-456 34-111 (111)
30 1wy8_A NP95-like ring finger p 99.7 6.7E-18 2.3E-22 132.3 10.5 79 379-457 6-86 (89)
31 1uh6_A Ubiquitin-like 5; beta- 99.7 2.2E-18 7.6E-23 135.4 7.3 70 1-70 29-98 (100)
32 2lxa_A Ubiquitin-like protein 99.7 2.4E-18 8.3E-23 133.0 6.8 74 1-74 2-79 (87)
33 2ojr_A Ubiquitin; lanthide-bin 99.7 5.8E-18 2E-22 138.2 9.3 78 379-456 34-111 (111)
34 3v6c_B Ubiquitin; structural g 99.7 9.8E-18 3.3E-22 131.9 9.9 77 378-454 15-91 (91)
35 2kdi_A Ubiquitin, vacuolar pro 99.7 5.3E-19 1.8E-23 144.7 2.6 104 150-253 7-113 (114)
36 1yx5_B Ubiquitin; proteasome, 99.7 8.2E-18 2.8E-22 134.3 9.2 91 1-91 1-91 (98)
37 2kk8_A Uncharacterized protein 99.7 5.4E-18 1.9E-22 130.8 7.9 73 1-73 11-84 (84)
38 4dwf_A HLA-B-associated transc 99.7 1.4E-17 5E-22 130.7 9.7 78 378-456 3-80 (90)
39 4eew_A Large proline-rich prot 99.7 9.2E-18 3.2E-22 131.2 8.2 87 61-148 2-88 (88)
40 4ajy_B Transcription elongatio 99.7 8.5E-18 2.9E-22 135.2 7.8 75 1-75 1-83 (118)
41 2uyz_B Small ubiquitin-related 99.7 8.4E-18 2.9E-22 128.7 7.3 76 1-76 4-79 (79)
42 1yx5_B Ubiquitin; proteasome, 99.7 2.5E-17 8.6E-22 131.4 10.2 77 381-457 1-77 (98)
43 2fnj_B Transcription elongatio 99.7 8.8E-18 3E-22 135.8 7.5 73 1-73 1-81 (118)
44 1uh6_A Ubiquitin-like 5; beta- 99.7 1.1E-17 3.9E-22 131.4 7.6 73 379-451 27-99 (100)
45 2kk8_A Uncharacterized protein 99.7 2E-17 6.9E-22 127.6 8.4 74 379-452 9-83 (84)
46 3l0w_B Monoubiquitinated proli 99.7 3.1E-17 1.1E-21 143.7 10.6 77 381-457 1-77 (169)
47 2faz_A Ubiquitin-like containi 99.7 3.7E-17 1.3E-21 124.8 9.6 75 379-453 1-77 (78)
48 1wyw_B Ubiquitin-like protein 99.7 1.4E-17 4.9E-22 132.4 7.4 76 1-76 22-97 (97)
49 1we6_A Splicing factor, putati 99.7 2.5E-17 8.4E-22 134.5 8.4 79 378-456 25-107 (111)
50 1ndd_A NEDD8, protein (ubiquit 99.7 4.6E-17 1.6E-21 123.5 9.2 76 1-76 1-76 (76)
51 2fnj_B Transcription elongatio 99.7 2.1E-17 7.2E-22 133.6 7.6 75 381-456 1-83 (118)
52 4dwf_A HLA-B-associated transc 99.7 3.4E-17 1.2E-21 128.6 8.5 74 1-75 6-79 (90)
53 1wgd_A Homocysteine-responsive 99.7 3.4E-17 1.2E-21 129.3 8.3 78 379-456 6-89 (93)
54 3b1l_X E3 ubiquitin-protein li 99.5 1.3E-18 4.4E-23 132.2 0.0 75 381-455 1-75 (76)
55 3dbh_I NEDD8; cell cycle, acti 99.7 3.2E-17 1.1E-21 128.2 7.8 76 1-76 13-88 (88)
56 2faz_A Ubiquitin-like containi 99.7 4E-17 1.4E-21 124.5 8.1 73 1-73 3-77 (78)
57 3q3f_A Ribonuclease/ubiquitin 99.7 5.5E-17 1.9E-21 143.5 9.8 81 377-457 102-182 (189)
58 1sif_A Ubiquitin; hydrophobic 99.7 5.2E-17 1.8E-21 126.8 8.5 76 1-76 10-85 (88)
59 3v6c_B Ubiquitin; structural g 99.7 4.6E-17 1.6E-21 128.0 8.2 74 1-74 18-91 (91)
60 4hcn_B Polyubiquitin, ubiquiti 99.7 5.6E-17 1.9E-21 129.3 8.6 76 1-76 23-98 (98)
61 4ajy_B Transcription elongatio 99.7 5.7E-17 2E-21 130.4 8.5 77 381-457 1-85 (118)
62 1se9_A Ubiquitin family; ubiqu 99.7 5.5E-17 1.9E-21 132.7 8.4 76 1-76 17-106 (126)
63 2hj8_A Interferon-induced 17 k 99.7 3.1E-17 1.1E-21 128.1 6.6 76 1-76 5-80 (88)
64 2dzi_A Ubiquitin-like protein 99.7 1E-16 3.5E-21 123.2 9.2 77 378-454 5-81 (81)
65 2lxa_A Ubiquitin-like protein 99.7 4.3E-17 1.5E-21 126.0 7.0 73 380-452 1-77 (87)
66 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 1E-16 3.5E-21 127.5 9.1 79 1-79 2-80 (96)
67 1yqb_A Ubiquilin 3; structural 99.7 1E-16 3.5E-21 128.0 9.0 78 378-456 20-97 (100)
68 3n3k_B Ubiquitin; hydrolase, p 99.7 8.3E-17 2.8E-21 124.9 8.2 76 1-76 4-79 (85)
69 2kan_A Uncharacterized protein 99.7 8.7E-17 3E-21 126.9 8.0 75 1-76 16-91 (94)
70 3l0w_B Monoubiquitinated proli 99.7 1E-16 3.4E-21 140.5 9.2 126 1-129 1-129 (169)
71 3a9j_A Ubiquitin; protein comp 99.7 1.6E-16 5.4E-21 120.5 9.1 76 1-76 1-76 (76)
72 1wju_A NEDD8 ultimate buster-1 99.7 1E-16 3.5E-21 125.9 8.1 66 390-456 29-94 (100)
73 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 1E-16 3.5E-21 125.0 8.0 76 1-76 8-83 (87)
74 1wgh_A Ubiquitin-like 3, HCG-1 99.7 1.1E-16 3.9E-21 129.8 8.4 74 1-74 17-100 (116)
75 2wyq_A HHR23A, UV excision rep 99.7 2.9E-16 9.8E-21 121.9 10.3 76 378-453 3-81 (85)
76 1wx8_A Riken cDNA 4931431F19; 99.7 6.6E-17 2.3E-21 128.5 6.8 77 379-456 16-92 (96)
77 3q3f_A Ribonuclease/ubiquitin 99.7 4.4E-17 1.5E-21 144.1 6.0 82 1-82 106-187 (189)
78 1v2y_A 3300001G02RIK protein; 99.7 6.6E-17 2.2E-21 128.8 6.2 78 379-456 6-99 (105)
79 4a20_A Ubiquitin-like protein 99.7 1.4E-16 4.9E-21 125.8 8.0 72 1-72 20-95 (98)
80 3mtn_B UBA80, ubcep1, ubiquiti 99.7 1.9E-16 6.4E-21 122.9 8.5 76 1-76 4-79 (85)
81 2l7r_A Ubiquitin-like protein 99.7 1.4E-16 4.9E-21 125.5 7.8 74 1-76 20-93 (93)
82 1uel_A HHR23B, UV excision rep 99.7 4.7E-16 1.6E-20 123.2 10.8 75 381-455 1-78 (95)
83 1se9_A Ubiquitin family; ubiqu 99.7 2.3E-16 7.7E-21 129.1 9.1 79 378-456 14-106 (126)
84 1we7_A SF3A1 protein; structur 99.7 2.6E-16 8.9E-21 129.2 9.5 79 379-457 24-112 (115)
85 1wy8_A NP95-like ring finger p 99.7 2E-16 6.7E-21 123.9 8.3 76 1-76 8-85 (89)
86 1v2y_A 3300001G02RIK protein; 99.7 4.6E-17 1.6E-21 129.7 4.6 76 1-76 8-99 (105)
87 3b1l_X E3 ubiquitin-protein li 99.5 7.3E-18 2.5E-22 128.0 0.0 75 1-75 1-75 (76)
88 3u5e_m 60S ribosomal protein L 99.7 7.9E-18 2.7E-22 141.0 0.0 77 381-457 1-77 (128)
89 3m62_B UV excision repair prot 99.7 1.5E-16 5.2E-21 128.5 7.4 74 1-74 2-75 (106)
90 3m62_B UV excision repair prot 99.7 2.3E-16 7.9E-21 127.4 8.4 74 380-453 1-74 (106)
91 3vdz_A Ubiquitin-40S ribosomal 99.7 2.6E-16 9E-21 128.2 8.7 76 1-76 36-111 (111)
92 1j8c_A Ubiquitin-like protein 99.6 4.2E-16 1.5E-20 129.4 10.0 77 379-456 31-107 (125)
93 3u5c_f 40S ribosomal protein S 99.6 1.1E-17 3.9E-22 143.0 0.0 76 381-456 1-76 (152)
94 4a20_A Ubiquitin-like protein 99.6 5.2E-16 1.8E-20 122.6 9.5 76 378-453 17-96 (98)
95 1uel_A HHR23B, UV excision rep 99.6 5.6E-16 1.9E-20 122.7 9.4 73 1-73 1-76 (95)
96 1v5o_A 1700011N24RIK protein; 99.6 3E-16 1E-20 125.9 7.8 78 379-456 6-88 (102)
97 2bwf_A Ubiquitin-like protein 99.6 7.5E-16 2.6E-20 117.1 9.6 71 381-452 5-75 (77)
98 1wx7_A Ubiquilin 3; ubiquitin- 99.6 4.9E-16 1.7E-20 125.7 9.0 77 379-456 16-92 (106)
99 2klc_A Ubiquilin-1; ubiquitin- 99.6 9.6E-16 3.3E-20 122.6 10.4 79 377-456 22-100 (101)
100 2wyq_A HHR23A, UV excision rep 99.6 5.3E-16 1.8E-20 120.3 8.7 73 1-73 6-81 (85)
101 1ttn_A DC-UBP, dendritic cell- 99.6 6.1E-16 2.1E-20 125.0 9.3 79 378-456 21-99 (106)
102 2dzi_A Ubiquitin-like protein 99.6 5.5E-16 1.9E-20 119.1 8.5 73 1-73 8-80 (81)
103 1wgh_A Ubiquitin-like 3, HCG-1 99.6 1.1E-15 3.7E-20 124.0 10.5 79 378-456 14-102 (116)
104 2gow_A HCG-1 protein, ubiquiti 99.6 3.3E-16 1.1E-20 129.0 7.3 75 1-75 18-102 (125)
105 3m63_B Ubiquitin domain-contai 99.6 1.4E-16 4.8E-21 127.3 4.9 91 359-452 9-99 (101)
106 1wgd_A Homocysteine-responsive 99.6 4.4E-16 1.5E-20 122.9 7.7 76 1-76 8-89 (93)
107 4dbg_A Ranbp-type and C3HC4-ty 99.6 6.4E-16 2.2E-20 122.4 8.5 73 1-73 25-100 (105)
108 1wju_A NEDD8 ultimate buster-1 99.6 6.2E-16 2.1E-20 121.5 7.9 71 4-75 19-93 (100)
109 2gow_A HCG-1 protein, ubiquiti 99.6 9.2E-16 3.1E-20 126.3 9.2 78 379-456 16-103 (125)
110 2bwf_A Ubiquitin-like protein 99.6 1.3E-15 4.3E-20 115.8 8.4 72 1-73 5-76 (77)
111 3m63_B Ubiquitin domain-contai 99.6 4.3E-16 1.5E-20 124.5 5.8 93 129-224 7-99 (101)
112 1ttn_A DC-UBP, dendritic cell- 99.6 1E-15 3.4E-20 123.7 7.4 74 1-74 24-97 (106)
113 2kdb_A Homocysteine-responsive 99.6 9.2E-16 3.1E-20 121.5 6.6 70 1-70 24-99 (99)
114 1yqb_A Ubiquilin 3; structural 99.6 1.8E-15 6E-20 120.8 7.9 74 1-75 23-96 (100)
115 2ojr_A Ubiquitin; lanthide-bin 99.6 3.3E-15 1.1E-19 121.8 8.9 76 1-76 36-111 (111)
116 4dbg_A Ranbp-type and C3HC4-ty 99.6 5.2E-15 1.8E-19 117.2 9.7 73 380-452 24-99 (105)
117 3u5e_m 60S ribosomal protein L 99.6 1.1E-16 3.8E-21 133.9 0.0 76 1-76 1-76 (128)
118 1wx8_A Riken cDNA 4931431F19; 99.6 1.4E-15 4.7E-20 120.8 6.3 75 1-76 18-92 (96)
119 1we6_A Splicing factor, putati 99.6 1.5E-15 5E-20 123.9 6.4 76 1-76 28-107 (111)
120 3u5c_f 40S ribosomal protein S 99.6 1.4E-16 4.8E-21 136.2 0.0 76 1-76 1-76 (152)
121 2klc_A Ubiquilin-1; ubiquitin- 99.6 6.6E-15 2.3E-19 117.7 8.6 73 1-74 26-98 (101)
122 1j8c_A Ubiquitin-like protein 99.6 6.1E-15 2.1E-19 122.4 8.5 75 1-76 33-107 (125)
123 2xzm_9 RPS31E; ribosome, trans 99.6 2.6E-16 8.9E-21 137.9 0.0 71 1-76 1-71 (189)
124 2kdb_A Homocysteine-responsive 99.6 4.5E-15 1.6E-19 117.5 6.8 72 379-450 22-99 (99)
125 2xzm_9 RPS31E; ribosome, trans 99.6 3.4E-16 1.2E-20 137.2 0.0 72 381-457 1-72 (189)
126 1v5o_A 1700011N24RIK protein; 99.6 4.9E-15 1.7E-19 118.8 6.7 76 1-76 8-88 (102)
127 1wx7_A Ubiquilin 3; ubiquitin- 99.5 8.9E-15 3.1E-19 118.2 7.9 74 1-75 18-91 (106)
128 2io1_B Small ubiquitin-related 99.5 1.9E-14 6.6E-19 112.8 9.0 80 378-457 5-84 (94)
129 2kd0_A LRR repeats and ubiquit 99.5 2.4E-14 8.3E-19 110.6 8.6 69 383-451 14-82 (85)
130 1wia_A Hypothetical ubiquitin- 99.5 3E-14 1E-18 112.8 9.1 74 379-455 6-80 (95)
131 2dzm_A FAS-associated factor 1 99.5 6.9E-15 2.4E-19 116.3 5.4 72 1-73 9-82 (100)
132 1v5t_A 8430435I17RIK protein; 99.5 2E-14 6.9E-19 112.4 7.7 73 379-452 6-82 (90)
133 2daf_A FLJ35834 protein; hypot 99.5 4.7E-14 1.6E-18 112.5 9.4 73 380-452 15-88 (118)
134 2dzj_A Synaptic glycoprotein S 99.5 1.1E-14 3.6E-19 113.1 5.5 69 1-69 11-85 (88)
135 1we7_A SF3A1 protein; structur 99.5 2.3E-14 7.9E-19 117.5 7.6 76 1-76 26-111 (115)
136 1x1m_A Ubiquitin-like protein 99.5 4.8E-14 1.6E-18 114.0 8.8 76 379-454 11-101 (107)
137 1v5t_A 8430435I17RIK protein; 99.5 2.8E-14 9.5E-19 111.6 6.9 72 1-73 8-83 (90)
138 1wgg_A Ubiquitin carboxyl-term 99.5 3.2E-14 1.1E-18 112.5 7.0 72 379-452 6-78 (96)
139 1wia_A Hypothetical ubiquitin- 99.5 3.4E-14 1.2E-18 112.5 7.1 71 1-74 8-79 (95)
140 2dzm_A FAS-associated factor 1 99.5 2.5E-14 8.6E-19 113.0 6.1 74 380-454 8-83 (100)
141 2kd0_A LRR repeats and ubiquit 99.5 5E-14 1.7E-18 108.9 7.6 70 3-72 14-83 (85)
142 2io0_B Small ubiquitin-related 99.5 1.3E-13 4.6E-18 107.2 10.0 80 378-457 3-82 (91)
143 1wgg_A Ubiquitin carboxyl-term 99.5 4.9E-14 1.7E-18 111.4 6.9 71 1-73 8-79 (96)
144 1wxv_A BAG-family molecular ch 99.5 9.9E-14 3.4E-18 109.1 8.5 74 379-453 6-85 (92)
145 2kjr_A CG11242; UBL, ubiquitin 99.5 1.4E-13 4.9E-18 108.1 9.2 72 379-450 14-93 (95)
146 3ai5_A Yeast enhanced green fl 99.5 9.7E-14 3.3E-18 131.5 9.7 77 378-454 231-307 (307)
147 2kjr_A CG11242; UBL, ubiquitin 99.5 8.8E-14 3E-18 109.3 7.9 70 2-71 17-94 (95)
148 2dzj_A Synaptic glycoprotein S 99.5 4.5E-14 1.5E-18 109.5 6.1 70 380-449 10-85 (88)
149 1x1m_A Ubiquitin-like protein 99.5 6E-14 2E-18 113.4 7.0 73 1-73 13-100 (107)
150 2daf_A FLJ35834 protein; hypot 99.5 1.1E-13 3.7E-18 110.5 7.8 79 76-154 15-94 (118)
151 4b6w_A Tubulin-specific chaper 99.5 1.4E-13 4.9E-18 106.0 7.8 65 388-452 12-83 (86)
152 4b6w_A Tubulin-specific chaper 99.5 9E-14 3.1E-18 107.2 6.5 70 3-72 5-83 (86)
153 1v86_A DNA segment, CHR 7, way 99.4 7.9E-14 2.7E-18 110.1 5.1 72 379-452 16-87 (95)
154 2d07_B Ubiquitin-like protein 99.4 4.8E-13 1.6E-17 104.8 9.4 79 378-456 15-93 (93)
155 3ai5_A Yeast enhanced green fl 99.4 2.3E-13 7.8E-18 129.0 8.3 74 1-74 234-307 (307)
156 1wxv_A BAG-family molecular ch 99.4 3.4E-13 1.2E-17 106.0 7.3 72 1-73 8-85 (92)
157 2kj6_A Tubulin folding cofacto 99.4 4.4E-13 1.5E-17 105.6 7.9 72 380-451 14-94 (97)
158 1oqy_A HHR23A, UV excision rep 99.4 3.2E-13 1.1E-17 131.7 7.9 78 379-456 6-87 (368)
159 1v86_A DNA segment, CHR 7, way 99.4 1.9E-13 6.4E-18 107.9 5.0 70 1-72 18-87 (95)
160 1wz0_A Ubiquitin-like protein 99.4 7.2E-13 2.5E-17 105.5 7.9 79 379-457 23-101 (104)
161 2kj6_A Tubulin folding cofacto 99.4 4.4E-13 1.5E-17 105.6 6.4 70 2-71 16-94 (97)
162 2io1_B Small ubiquitin-related 99.4 7.6E-13 2.6E-17 103.7 7.7 76 1-76 8-83 (94)
163 2eke_C Ubiquitin-like protein 99.4 1.4E-12 5E-17 103.8 8.7 77 379-456 30-106 (106)
164 1oqy_A HHR23A, UV excision rep 99.4 6.4E-13 2.2E-17 129.6 7.1 75 1-75 8-86 (368)
165 1v6e_A Cytoskeleton-associated 99.3 1.6E-12 5.5E-17 102.6 7.7 71 381-451 8-86 (95)
166 1wf9_A NPL4 family protein; be 99.3 7.2E-13 2.5E-17 106.9 5.6 72 380-452 7-94 (107)
167 1wf9_A NPL4 family protein; be 99.3 9E-13 3.1E-17 106.4 5.4 71 1-72 8-94 (107)
168 2k8h_A Small ubiquitin protein 99.3 1.4E-12 4.8E-17 104.7 6.2 79 378-456 24-102 (110)
169 1wm3_A Ubiquitin-like protein 99.3 1.1E-11 3.9E-16 92.2 8.9 70 381-450 2-71 (72)
170 1v6e_A Cytoskeleton-associated 99.3 4.7E-12 1.6E-16 99.9 6.9 70 2-71 9-86 (95)
171 2io0_B Small ubiquitin-related 99.3 1.1E-11 3.7E-16 96.3 8.3 76 1-76 6-81 (91)
172 1t0y_A Tubulin folding cofacto 99.3 1.2E-11 4.2E-16 102.1 8.7 72 380-451 6-85 (122)
173 2kzr_A Ubiquitin thioesterase 99.2 8.3E-12 2.8E-16 96.6 6.3 71 381-452 1-77 (86)
174 3a4r_A Nfatc2-interacting prot 99.2 4.2E-11 1.4E-15 90.7 9.6 73 378-450 5-78 (79)
175 1wm3_A Ubiquitin-like protein 99.2 2.3E-11 7.8E-16 90.6 7.6 70 1-70 2-71 (72)
176 1t0y_A Tubulin folding cofacto 99.2 1.9E-11 6.4E-16 101.0 7.8 71 2-72 8-86 (122)
177 2d07_B Ubiquitin-like protein 99.2 3.7E-11 1.3E-15 94.0 8.2 75 1-75 18-92 (93)
178 2kzr_A Ubiquitin thioesterase 99.2 2.7E-11 9.4E-16 93.6 5.5 70 1-71 1-76 (86)
179 1wz0_A Ubiquitin-like protein 99.1 4.7E-11 1.6E-15 95.0 6.4 76 1-76 25-100 (104)
180 3a4r_A Nfatc2-interacting prot 99.1 1.2E-10 4.2E-15 88.2 8.1 70 1-70 8-78 (79)
181 2k8h_A Small ubiquitin protein 99.1 4.2E-11 1.4E-15 96.1 5.5 77 1-77 27-103 (110)
182 2eke_C Ubiquitin-like protein 99.1 1.1E-10 3.6E-15 93.0 7.5 74 1-75 32-105 (106)
183 3shq_A UBLCP1; phosphatase, hy 99.1 6.8E-11 2.3E-15 113.7 7.3 71 305-376 6-79 (320)
184 3shq_A UBLCP1; phosphatase, hy 99.1 1.3E-10 4.3E-15 111.8 6.7 77 75-152 4-83 (320)
185 1wjn_A Tubulin-folding protein 99.0 7E-10 2.4E-14 87.7 9.1 72 380-451 9-91 (97)
186 3kyd_D Small ubiquitin-related 99.0 1.6E-09 5.6E-14 86.9 10.2 77 379-455 39-115 (115)
187 2ylm_A Ubiquitin carboxyl-term 98.9 1.3E-06 4.6E-11 89.8 31.2 345 89-435 38-502 (530)
188 3pge_A SUMO-modified prolifera 98.9 3E-09 1E-13 94.2 9.2 78 379-457 28-105 (200)
189 3tix_A Ubiquitin-like protein 98.9 2.1E-09 7.2E-14 92.7 7.4 78 379-457 56-133 (207)
190 3v7o_A Minor nucleoprotein VP3 98.8 6.5E-10 2.2E-14 97.2 0.3 79 378-457 19-97 (227)
191 1wjn_A Tubulin-folding protein 98.8 1.5E-08 5E-13 80.0 7.7 73 76-148 9-92 (97)
192 2ylm_A Ubiquitin carboxyl-term 98.7 1.6E-05 5.3E-10 81.8 29.5 331 11-343 36-479 (530)
193 3kyd_D Small ubiquitin-related 98.7 9.9E-08 3.4E-12 76.5 9.5 73 228-300 40-112 (115)
194 3goe_A DNA repair protein RAD6 98.6 3.1E-07 1E-11 66.7 9.6 69 383-451 12-81 (82)
195 2pjh_A Protein NPL4, nuclear p 98.5 5.2E-08 1.8E-12 73.6 3.9 71 379-450 3-78 (80)
196 3pge_A SUMO-modified prolifera 98.5 7.1E-07 2.4E-11 78.9 10.8 99 227-327 28-130 (200)
197 3tix_A Ubiquitin-like protein 98.4 5.3E-07 1.8E-11 77.8 7.4 76 228-304 57-132 (207)
198 2jxx_A Nfatc2-interacting prot 98.4 1.7E-06 5.8E-11 67.4 8.8 73 378-450 23-96 (97)
199 3ix6_A TS, tsase, thymidylate 98.3 6.4E-08 2.2E-12 93.0 0.2 79 378-457 19-97 (360)
200 3uf8_A Ubiquitin-like protein 98.3 2E-06 6.8E-11 77.6 8.5 79 378-457 19-97 (209)
201 4efo_A Serine/threonine-protei 98.2 4E-06 1.4E-10 64.4 7.6 55 7-61 20-76 (94)
202 3v7o_A Minor nucleoprotein VP3 98.1 2.9E-07 9.8E-12 80.6 0.1 82 71-153 16-97 (227)
203 3goe_A DNA repair protein RAD6 98.1 2.1E-05 7.2E-10 57.1 9.1 71 153-223 10-81 (82)
204 2pjh_A Protein NPL4, nuclear p 98.1 2E-06 7E-11 64.8 3.7 71 75-146 3-78 (80)
205 2l76_A Nfatc2-interacting prot 98.0 2.5E-05 8.5E-10 59.6 8.7 72 379-451 20-91 (95)
206 4efo_A Serine/threonine-protei 98.0 1.7E-05 5.7E-10 61.0 7.4 64 388-451 21-87 (94)
207 2al3_A TUG long isoform; TUG U 97.9 2.3E-05 7.8E-10 59.3 7.2 75 227-301 8-82 (90)
208 3ivf_A Talin-1; FERM domain, c 97.9 0.00049 1.7E-08 67.7 18.6 134 162-298 12-165 (371)
209 2jxx_A Nfatc2-interacting prot 97.9 5.9E-05 2E-09 58.6 8.5 71 228-298 25-96 (97)
210 3ivf_A Talin-1; FERM domain, c 97.8 0.00076 2.6E-08 66.3 18.5 136 314-452 12-167 (371)
211 3uf8_A Ubiquitin-like protein 97.8 8.8E-05 3E-09 66.7 10.5 91 226-318 19-109 (209)
212 4da1_A Protein phosphatase 1K, 97.8 2.5E-06 8.6E-11 84.7 0.0 77 380-457 30-106 (389)
213 2al3_A TUG long isoform; TUG U 97.8 8.7E-05 3E-09 56.1 7.7 74 379-452 8-81 (90)
214 2kc2_A Talin-1, F1; FERM, adhe 97.6 6.6E-05 2.3E-09 61.2 5.8 71 306-376 13-122 (128)
215 3ix6_A TS, tsase, thymidylate 97.6 8.9E-06 3E-10 78.2 -0.0 86 71-157 16-101 (360)
216 2kc2_A Talin-1, F1; FERM, adhe 97.6 9.7E-05 3.3E-09 60.2 5.7 71 382-452 13-122 (128)
217 2l76_A Nfatc2-interacting prot 97.5 0.00043 1.5E-08 52.8 8.2 70 229-299 22-91 (95)
218 2bps_A YUKD protein; ubiquitin 97.5 0.00033 1.1E-08 52.3 6.9 62 388-449 14-80 (81)
219 3qx1_A FAS-associated factor 1 97.0 0.003 1E-07 47.7 8.5 72 379-451 6-82 (84)
220 4da1_A Protein phosphatase 1K, 97.0 0.0001 3.6E-09 73.0 0.0 77 229-306 31-107 (389)
221 2bps_A YUKD protein; ubiquitin 96.7 0.006 2.1E-07 45.4 7.2 62 236-297 14-80 (81)
222 3qx1_A FAS-associated factor 1 96.6 0.0093 3.2E-07 45.0 8.4 70 305-375 8-82 (84)
223 1wj4_A KIAA0794 protein; UBX d 96.0 0.016 5.4E-07 47.2 6.9 72 379-451 42-118 (124)
224 2dzk_A UBX domain-containing p 95.9 0.034 1.1E-06 44.1 8.3 74 379-452 12-90 (109)
225 2dzk_A UBX domain-containing p 95.8 0.033 1.1E-06 44.2 7.8 72 305-376 14-90 (109)
226 1ryj_A Unknown; beta/alpha pro 95.8 0.1 3.5E-06 37.6 9.7 67 380-456 4-70 (70)
227 1wj4_A KIAA0794 protein; UBX d 95.6 0.034 1.2E-06 45.1 7.4 70 305-375 44-118 (124)
228 2daj_A KIAA0977 protein, COBL- 95.2 0.029 1E-06 41.3 5.0 64 380-443 10-76 (91)
229 4e71_A Plexin-B2, MM1; transme 95.1 0.11 3.7E-06 40.8 8.4 63 390-452 23-110 (111)
230 4e71_A Plexin-B2, MM1; transme 94.4 0.057 1.9E-06 42.5 5.2 64 9-72 22-110 (111)
231 2cr5_A Reproduction 8; UBX dom 94.2 0.16 5.6E-06 40.1 7.6 71 380-451 23-97 (109)
232 4a3p_A Ubiquitin carboxyl-term 94.0 0.11 3.7E-06 46.7 6.9 65 392-456 141-212 (217)
233 3h6n_A Plexin-D1; structural g 93.9 0.41 1.4E-05 38.4 9.3 64 389-452 15-104 (127)
234 2cr5_A Reproduction 8; UBX dom 93.8 0.17 5.7E-06 40.0 7.0 71 152-223 23-97 (109)
235 2l32_A Small archaeal modifier 93.8 0.13 4.5E-06 37.5 5.9 66 381-456 1-66 (74)
236 3jyu_A Ubiquitin carboxyl-term 93.8 0.16 5.5E-06 46.0 7.7 65 392-456 153-224 (231)
237 1s3s_G P47 protein; AAA ATPase 93.7 0.17 5.8E-06 41.2 7.0 69 379-447 51-123 (127)
238 2juo_A GA-binding protein alph 93.6 0.47 1.6E-05 34.8 8.3 58 241-298 5-62 (89)
239 3h6n_A Plexin-D1; structural g 93.1 0.46 1.6E-05 38.1 8.3 67 6-72 12-104 (127)
240 2r2o_A Plexin-B1; effector dom 92.9 0.29 1E-05 39.8 7.0 65 10-74 40-130 (138)
241 1s3s_G P47 protein; AAA ATPase 92.8 0.25 8.5E-06 40.2 6.7 68 152-219 52-123 (127)
242 1oey_A P67-PHOX, neutrophil cy 92.3 0.28 9.6E-06 36.4 5.8 47 379-427 4-50 (83)
243 2juo_A GA-binding protein alph 92.3 0.56 1.9E-05 34.4 7.1 61 393-453 5-65 (89)
244 2r2o_A Plexin-B1; effector dom 92.3 0.56 1.9E-05 38.2 7.9 63 391-453 41-129 (138)
245 4e74_A Plexin-A4; RBD, structu 92.0 0.49 1.7E-05 37.5 7.1 64 390-453 26-115 (117)
246 2daj_A KIAA0977 protein, COBL- 91.9 0.28 9.5E-06 36.2 5.1 64 152-215 10-76 (91)
247 1tyg_B YJBS; alpha beta barrel 91.8 0.55 1.9E-05 35.3 7.0 68 379-456 19-87 (87)
248 1vjk_A Molybdopterin convertin 91.6 1.3 4.4E-05 34.0 9.2 73 379-456 8-98 (98)
249 3rpf_C Molybdopterin convertin 90.0 1.2 4E-05 32.2 7.2 58 394-456 15-74 (74)
250 4e74_A Plexin-A4; RBD, structu 88.6 1.1 3.7E-05 35.5 6.4 63 10-72 26-114 (117)
251 3kuz_A Plexin-C1; structural g 88.5 3.3 0.00011 33.0 9.1 61 391-451 39-125 (126)
252 1f0z_A THis protein; ubiquitin 87.9 0.91 3.1E-05 32.0 5.2 58 394-456 9-66 (66)
253 3jyu_A Ubiquitin carboxyl-term 86.8 2.5 8.4E-05 38.1 8.7 62 165-226 154-222 (231)
254 1oey_A P67-PHOX, neutrophil cy 86.6 1.5 5E-05 32.5 5.7 47 230-276 5-51 (83)
255 3po0_A Small archaeal modifier 86.3 3.4 0.00011 30.8 7.9 61 391-456 18-89 (89)
256 4a3p_A Ubiquitin carboxyl-term 86.0 1.5 5.2E-05 39.1 6.8 62 164-225 141-209 (217)
257 2kl0_A Putative thiamin biosyn 85.7 0.95 3.2E-05 32.7 4.3 60 389-456 6-65 (73)
258 2l32_A Small archaeal modifier 85.2 1.9 6.4E-05 31.2 5.7 61 77-147 1-61 (74)
259 2kvr_A Ubiquitin carboxyl-term 84.2 0.96 3.3E-05 36.8 4.1 34 393-426 58-91 (130)
260 1fm0_D Molybdopterin convertin 83.4 3 0.0001 30.4 6.3 59 392-456 18-81 (81)
261 3kuz_A Plexin-C1; structural g 83.2 2.2 7.7E-05 34.0 5.7 60 11-70 39-124 (126)
262 3dwg_C 9.5 kDa culture filtrat 83.1 7.1 0.00024 29.3 8.5 62 393-456 19-93 (93)
263 1ef1_A Moesin; membrane, FERM 82.5 5.3 0.00018 37.1 9.2 73 380-453 1-79 (294)
264 2k5p_A THis protein, thiamine- 82.3 1.5 5E-05 32.2 4.1 61 389-456 6-69 (78)
265 1h4r_A Merlin; FERM, neurofibr 82.2 5.1 0.00017 37.7 9.1 75 378-453 20-99 (314)
266 1ryj_A Unknown; beta/alpha pro 81.0 11 0.00038 26.6 8.4 63 152-224 4-66 (70)
267 2q5w_D Molybdopterin convertin 80.7 3 0.0001 30.1 5.4 59 392-456 17-77 (77)
268 2kvr_A Ubiquitin carboxyl-term 80.3 1.7 5.7E-05 35.4 4.1 36 11-46 56-91 (130)
269 2cu3_A Unknown function protei 80.1 4.4 0.00015 28.1 5.9 60 389-456 5-64 (64)
270 2kmc_A Fermitin family homolog 79.6 11 0.00039 28.5 8.1 71 2-72 21-99 (102)
271 3hm6_X Plexin-B1; structural g 78.7 4.9 0.00017 41.0 7.8 62 87-148 274-361 (644)
272 1rws_A Hypothetical protein PF 76.7 0.83 2.8E-05 33.4 1.2 54 394-456 24-77 (77)
273 1vjk_A Molybdopterin convertin 76.4 11 0.00039 28.5 7.8 70 74-148 7-94 (98)
274 2i1j_A Moesin; FERM, coiled-co 75.7 9.6 0.00033 39.2 9.3 74 379-453 3-82 (575)
275 2kmc_A Fermitin family homolog 75.3 14 0.00047 28.1 7.4 71 381-451 20-98 (102)
276 1vd2_A Protein kinase C, IOTA 74.9 12 0.00042 27.9 7.3 48 379-427 5-53 (89)
277 3ig3_A Plxna3 protein; plexin 74.2 13 0.00045 37.9 9.4 64 390-453 246-335 (627)
278 3hm6_X Plexin-B1; structural g 74.0 5.8 0.0002 40.5 6.8 63 11-73 274-362 (644)
279 2g1e_A Hypothetical protein TA 73.8 12 0.00041 27.6 7.2 62 394-456 18-90 (90)
280 1h4r_A Merlin; FERM, neurofibr 73.2 16 0.00053 34.2 9.5 72 227-299 21-97 (314)
281 1ef1_A Moesin; membrane, FERM 73.1 14 0.00047 34.2 9.0 70 229-299 2-77 (294)
282 3u52_E Phenol hydroxylase comp 72.8 15 0.00051 28.9 7.4 65 392-456 39-113 (119)
283 1vd2_A Protein kinase C, IOTA 71.8 19 0.00065 26.9 7.6 48 76-124 6-54 (89)
284 1wgk_A Riken cDNA 2900073H19 p 70.5 33 0.0011 26.9 9.2 75 380-457 11-109 (114)
285 2i1j_A Moesin; FERM, coiled-co 68.8 16 0.00055 37.5 9.0 71 228-299 4-80 (575)
286 3qij_A Protein 4.1; cytoskelet 68.7 15 0.0005 34.2 8.1 75 378-452 15-95 (296)
287 2qjl_A URM1, ubiquitin-related 67.6 37 0.0013 25.6 9.4 65 391-456 20-99 (99)
288 3ig3_A Plxna3 protein; plexin 67.2 17 0.00057 37.1 8.4 65 10-74 246-336 (627)
289 1y8x_B Ubiquitin-activating en 66.6 13 0.00043 28.4 5.8 59 392-450 6-82 (98)
290 1ip9_A BEM1 protein; ubiquitin 64.9 15 0.00053 27.0 5.7 43 379-424 11-53 (85)
291 2inc_C TOUB protein; DIIRON, 4 64.1 40 0.0014 24.6 8.9 61 392-452 14-82 (83)
292 2kmm_A Guanosine-3',5'-BIS(dip 63.7 15 0.00051 25.8 5.6 61 1-70 1-61 (73)
293 1wgr_A Growth factor receptor- 62.8 17 0.00057 27.9 5.8 71 380-450 9-90 (100)
294 3rpf_C Molybdopterin convertin 62.4 26 0.0009 24.8 6.7 55 167-226 16-72 (74)
295 3po0_A Small archaeal modifier 60.8 44 0.0015 24.4 8.0 59 163-226 18-87 (89)
296 4eut_A Serine/threonine-protei 60.6 29 0.00099 33.3 8.8 43 7-49 318-360 (396)
297 1tyg_B YJBS; alpha beta barrel 60.1 32 0.0011 25.5 6.9 65 151-225 19-84 (87)
298 3qa8_A MGC80376 protein; kinas 59.8 7.7 0.00026 40.7 4.6 51 389-439 320-371 (676)
299 3ge3_C Toluene-4-monooxygenase 58.5 51 0.0017 24.1 7.3 60 392-451 16-82 (84)
300 3qij_A Protein 4.1; cytoskelet 58.1 22 0.00077 32.9 7.2 71 227-297 16-92 (296)
301 1wgr_A Growth factor receptor- 57.7 25 0.00085 26.9 6.0 40 75-114 8-47 (100)
302 1ip9_A BEM1 protein; ubiquitin 55.5 38 0.0013 24.9 6.3 38 75-113 11-48 (85)
303 4eut_A Serine/threonine-protei 54.8 20 0.00069 34.4 6.6 52 389-440 320-373 (396)
304 2kmm_A Guanosine-3',5'-BIS(dip 53.7 38 0.0013 23.5 6.3 62 381-451 1-62 (73)
305 1fm0_D Molybdopterin convertin 53.2 25 0.00087 25.2 5.4 54 240-299 18-76 (81)
306 3onh_A Ubiquitin-activating en 52.8 33 0.0011 27.3 6.1 56 394-450 9-77 (127)
307 1q1o_A Cell division control p 51.3 23 0.00077 27.0 4.8 40 74-113 3-49 (98)
308 1wgy_A RAP guanine nucleotide 46.6 76 0.0026 24.3 7.1 72 153-224 10-86 (104)
309 2lgx_A Fermitin family homolog 46.6 14 0.00049 28.4 3.0 70 2-72 28-102 (112)
310 2k9x_A Tburm1, uncharacterized 45.9 19 0.00066 28.0 3.8 76 228-305 4-103 (110)
311 2kl0_A Putative thiamin biosyn 45.3 25 0.00085 25.0 4.0 57 312-376 5-61 (73)
312 2cu3_A Unknown function protei 44.2 42 0.0014 22.9 5.0 58 311-376 3-60 (64)
313 3qa8_A MGC80376 protein; kinas 43.9 21 0.00072 37.4 4.9 52 312-363 319-371 (676)
314 2c7h_A RBBP6, retinoblastoma-b 43.0 72 0.0025 23.5 6.2 53 382-434 8-66 (86)
315 1j0g_A Hypothetical protein 18 42.3 63 0.0022 23.3 5.6 64 393-456 26-90 (92)
316 1wgy_A RAP guanine nucleotide 41.8 67 0.0023 24.7 6.1 72 77-148 10-86 (104)
317 1q1o_A Cell division control p 41.7 28 0.00094 26.5 3.9 47 380-426 5-63 (98)
318 2qjl_A URM1, ubiquitin-related 41.1 1.1E+02 0.0038 22.8 7.8 24 87-110 20-45 (99)
319 3dwg_C 9.5 kDa culture filtrat 41.1 1E+02 0.0035 22.5 8.0 60 166-227 20-92 (93)
320 2v1y_A Phosphatidylinositol-4, 40.1 1.1E+02 0.0036 23.7 7.1 60 231-290 22-95 (108)
321 2k9x_A Tburm1, uncharacterized 39.2 19 0.00066 28.0 2.8 75 380-456 4-102 (110)
322 1wgk_A Riken cDNA 2900073H19 p 39.0 1.3E+02 0.0046 23.2 8.5 76 76-152 11-108 (114)
323 2l52_A Methanosarcina acetivor 38.7 58 0.002 24.5 5.5 74 380-456 3-99 (99)
324 2q5w_D Molybdopterin convertin 37.2 56 0.0019 23.0 5.0 55 163-223 16-72 (77)
325 2zjd_A Microtubule-associated 36.9 1E+02 0.0034 24.7 6.8 43 242-284 56-100 (130)
326 4gmv_A RAS-associated and plec 35.2 68 0.0023 29.4 6.3 68 383-450 34-112 (281)
327 3au4_A Myosin-X; protein-prote 34.8 70 0.0024 32.4 7.0 48 379-426 215-264 (555)
328 1rax_A Protein (RA-domain of R 34.1 92 0.0031 24.2 5.8 70 2-74 32-112 (115)
329 3h9d_A ATG8, microtubule-assoc 33.9 58 0.002 25.7 4.9 58 394-451 51-112 (119)
330 3chb_D Cholera toxin; toxin/re 33.6 44 0.0015 24.2 3.7 44 307-352 39-92 (104)
331 1v8c_A MOAD related protein; r 33.2 93 0.0032 26.1 6.4 61 394-456 17-87 (168)
332 2v1y_A Phosphatidylinositol-4, 33.2 61 0.0021 25.1 4.7 32 306-337 21-52 (108)
333 2c7h_A RBBP6, retinoblastoma-b 32.7 57 0.002 24.1 4.3 56 14-74 21-82 (86)
334 1pqs_A Cell division control p 32.6 36 0.0012 24.6 3.2 26 316-341 3-28 (77)
335 2hj1_A Hypothetical protein; s 32.6 95 0.0033 23.4 5.7 69 380-453 12-86 (97)
336 1y8x_B Ubiquitin-activating en 32.1 72 0.0025 24.2 4.9 61 163-223 5-83 (98)
337 3onh_A Ubiquitin-activating en 31.1 1.1E+02 0.0038 24.3 6.0 52 172-224 19-79 (127)
338 1c1y_B Proto-onkogene serine/t 31.0 78 0.0027 22.8 4.6 42 155-197 4-45 (77)
339 2g1e_A Hypothetical protein TA 30.4 1.5E+02 0.0052 21.3 6.7 56 243-299 19-85 (90)
340 2inc_C TOUB protein; DIIRON, 4 30.2 1.6E+02 0.0054 21.4 7.4 60 88-147 14-81 (83)
341 3hk0_A Growth factor receptor- 30.0 81 0.0028 28.5 5.9 55 382-436 10-71 (256)
342 2zjd_A Microtubule-associated 29.9 1.1E+02 0.0039 24.4 6.0 75 74-148 33-119 (130)
343 3r8s_T 50S ribosomal protein L 29.3 65 0.0022 24.2 4.2 39 390-428 27-66 (93)
344 3rui_B Autophagy-related prote 29.0 1.9E+02 0.0063 22.7 7.0 43 242-284 50-93 (118)
345 2r2q_A Gamma-aminobutyric acid 28.5 1E+02 0.0035 23.7 5.4 44 242-285 47-91 (110)
346 1eo6_A GATE-16, golgi-associat 28.3 1.6E+02 0.0055 22.9 6.6 44 242-285 48-92 (117)
347 3kh0_A Ralgds, ralgef, RAL gua 28.1 2.2E+02 0.0075 22.8 7.2 75 2-76 29-111 (140)
348 3m95_A Autophagy related prote 27.8 66 0.0023 25.6 4.2 59 394-452 56-118 (125)
349 2eel_A Cell death activator CI 27.6 93 0.0032 23.2 4.7 49 401-452 28-78 (91)
350 3r8s_T 50S ribosomal protein L 26.9 61 0.0021 24.3 3.7 40 313-352 26-66 (93)
351 3h9d_A ATG8, microtubule-assoc 26.0 1.5E+02 0.0051 23.2 6.0 43 242-284 51-94 (119)
352 2j58_A WZA, outer membrane lip 25.9 4.2E+02 0.014 24.9 11.0 105 323-451 117-231 (359)
353 2r2q_A Gamma-aminobutyric acid 25.8 76 0.0026 24.5 4.2 58 394-451 47-108 (110)
354 1f2r_I Inhibitor of caspase-ac 25.7 78 0.0027 24.1 4.1 49 401-452 37-89 (100)
355 2lgx_A Fermitin family homolog 25.6 58 0.002 25.1 3.3 69 229-298 27-100 (112)
356 1vq8_S 50S ribosomal protein L 25.3 67 0.0023 23.6 3.6 34 390-423 22-55 (85)
357 3ge3_C Toluene-4-monooxygenase 25.3 2E+02 0.0068 21.0 6.5 60 88-147 16-82 (84)
358 1pqs_A Cell division control p 25.2 49 0.0017 23.9 2.7 36 392-427 3-43 (77)
359 1rws_A Hypothetical protein PF 24.4 38 0.0013 24.2 2.1 50 90-148 24-73 (77)
360 1c1y_B Proto-onkogene serine/t 24.2 1.4E+02 0.0048 21.5 4.9 42 3-45 4-45 (77)
361 1vq8_S 50S ribosomal protein L 24.1 61 0.0021 23.9 3.2 32 313-344 21-52 (85)
362 3lxf_A Ferredoxin; iron, iron- 24.1 93 0.0032 23.5 4.4 28 2-29 2-29 (104)
363 3m95_A Autophagy related prote 23.7 2.1E+02 0.0073 22.6 6.5 43 242-284 56-99 (125)
364 3pvl_A Myosin VIIA isoform 1; 23.4 95 0.0032 32.3 5.7 47 379-425 262-309 (655)
365 3rui_B Autophagy-related prote 23.3 1E+02 0.0035 24.2 4.6 58 394-451 50-111 (118)
366 3u52_E Phenol hydroxylase comp 22.9 2.7E+02 0.0093 21.7 8.6 69 306-374 24-107 (119)
367 3tca_A Amyloid beta A4 precurs 22.8 1.4E+02 0.0048 26.9 6.3 43 3-45 37-79 (291)
368 2zjr_Q 50S ribosomal protein L 22.3 85 0.0029 23.6 3.7 33 389-422 22-54 (95)
369 3tca_A Amyloid beta A4 precurs 22.3 1.5E+02 0.0051 26.7 6.4 42 381-422 35-76 (291)
370 1eo6_A GATE-16, golgi-associat 22.1 94 0.0032 24.3 4.1 59 394-452 48-110 (117)
371 2dhz_A RAP guanine nucleotide 22.1 1.7E+02 0.0059 22.9 5.6 72 153-224 10-92 (120)
372 3tve_T 50S ribosomal protein L 21.3 99 0.0034 23.1 3.9 32 391-422 22-53 (92)
373 3tve_T 50S ribosomal protein L 20.7 79 0.0027 23.6 3.2 38 315-352 22-60 (92)
374 3j21_T 50S ribosomal protein L 20.6 1E+02 0.0035 22.7 3.8 34 390-423 23-56 (86)
375 3j21_T 50S ribosomal protein L 20.3 91 0.0031 23.0 3.4 32 313-344 22-53 (86)
376 3au4_A Myosin-X; protein-prote 20.3 1.8E+02 0.0061 29.3 6.9 45 229-273 217-263 (555)
377 4gdk_A Ubiquitin-like protein 20.3 1.5E+02 0.0051 22.0 4.7 43 242-284 23-67 (91)
378 4eku_A Protein-tyrosine kinase 20.1 1.6E+02 0.0053 28.4 6.1 51 388-438 35-96 (392)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=3.9e-35 Score=257.30 Aligned_cols=153 Identities=34% Similarity=0.493 Sum_probs=147.1
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE-e-cCeeccCCCcccccccccCceEEEEEE-ecCce
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 381 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~-~-~g~~L~d~~~l~~~~i~~~~~l~l~~~-~~~~~ 381 (457)
|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|. | +|..|+|+.+|++|++.++++++|+.+ .+++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 78999999999999999999999999999999999999999999 9 799999999999999999999999998 48899
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
+|+|++.+|+++.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++|++++|++||.
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999994
No 2
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=100.00 E-value=2.7e-35 Score=258.32 Aligned_cols=152 Identities=34% Similarity=0.508 Sum_probs=147.4
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEe-e-ccEEccCCCcccccccccccceeEEEE-ecCcE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-F-AGKQLEDGRTLADYNIQKESTLHLVLR-LRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~-~-~g~~L~~~~tl~~y~i~~~sti~l~~~-~~~~~ 77 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+ | +|+.|+|+.+|++|+|.+++++|++++ ++++|
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m 82 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPL 82 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCE
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcE
Confidence 89999999999999999999999999999999999999999999 9 799999999999999999999999999 58999
Q ss_pred EEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 78 ~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
+|+|++.+|+.+.++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+|++||+.++++||
T Consensus 83 ~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG 157 (159)
T 3rt3_B 83 SILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 157 (159)
T ss_dssp EEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998876
No 3
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.8e-34 Score=256.27 Aligned_cols=155 Identities=94% Similarity=1.292 Sum_probs=146.7
Q ss_pred cCceeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCce
Q 012736 302 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 381 (457)
Q Consensus 302 ~~~~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~ 381 (457)
...|+|+|++++|+++++++++++||.+||++|++++|+|+++|+|.|+|+.|+|+.+|++|++.++++++|+.+..+.|
T Consensus 18 ~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~ 97 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 97 (172)
T ss_dssp -CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|+|||
T Consensus 98 ~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 98 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred cceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
No 4
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=257.15 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=145.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|+|||++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++|+++
T Consensus 21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~ 100 (172)
T 3u30_A 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 100 (172)
T ss_dssp EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
|++.+|+.+.++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.++++||
T Consensus 101 Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 101 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp EEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred eecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999998775
No 5
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1.4e-32 Score=239.36 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.2
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 384 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~ 384 (457)
|+|+|+.++|+++++++++++||++||++|++++|+|+++|+|.|+|..|+|+.+|++|++.+++++++..+.++.|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999888899999
Q ss_pred EEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 385 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 385 v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998
No 6
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=100.00 E-value=1.2e-32 Score=239.88 Aligned_cols=152 Identities=96% Similarity=1.322 Sum_probs=148.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+++|+|+
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~ 80 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF 80 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeeccccccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecc
Q 012736 81 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 81 vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~ 152 (457)
|++.+|+.+.+++++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++||+.++++||
T Consensus 81 Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 81 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp EEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred eeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988775
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=138.91 Aligned_cols=77 Identities=35% Similarity=0.569 Sum_probs=75.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 455 (457)
++|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999998
No 8
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.80 E-value=1.8e-19 Score=138.62 Aligned_cols=79 Identities=24% Similarity=0.386 Sum_probs=71.3
Q ss_pred EEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 373 LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 373 l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|+...++.|+|||++..|+++.++|.|++||.+||++|++++|+||++|+|+|+|+.|+|+.||++|+|++|++|+|..
T Consensus 14 ~~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 14 LVPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp ------CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEE
T ss_pred ccCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEEe
Confidence 4555678899999999999999999999999999999999999999999999999999999999999999999999864
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.80 E-value=1.5e-19 Score=141.29 Aligned_cols=77 Identities=56% Similarity=0.917 Sum_probs=73.1
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999994
No 10
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.79 E-value=1.9e-19 Score=138.44 Aligned_cols=70 Identities=23% Similarity=0.433 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|||||+++.|+++++++.|+|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||.
T Consensus 22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 11
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.78 E-value=6.5e-19 Score=133.80 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.9
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 12
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.78 E-value=3.9e-19 Score=136.14 Aligned_cols=77 Identities=18% Similarity=0.425 Sum_probs=74.8
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.|+|+|++.+|+++.++|++++||++||++|+++.|+|+++|+|+|+|++|+|+.||++|||++|++|++.+|++||
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999998
No 13
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.78 E-value=4.9e-19 Score=138.61 Aligned_cols=79 Identities=57% Similarity=0.963 Sum_probs=76.9
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..+|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++||
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999999999998
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.77 E-value=9.3e-19 Score=136.96 Aligned_cols=88 Identities=28% Similarity=0.519 Sum_probs=72.2
Q ss_pred ccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC
Q 012736 364 NIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 443 (457)
Q Consensus 364 ~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~ 443 (457)
|..+++++++..+.+..|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++||| +
T Consensus 1 g~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~ 79 (88)
T 4eew_A 1 GMEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-G 79 (88)
T ss_dssp --------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-T
T ss_pred CCCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-C
Confidence 345778888888888899999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred CCEEEEEEe
Q 012736 444 ESTLHLVLR 452 (457)
Q Consensus 444 ~~~i~l~~r 452 (457)
|++|+|+.|
T Consensus 80 g~~i~lv~R 88 (88)
T 4eew_A 80 GKVIHLVER 88 (88)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEEC
Confidence 999999986
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.77 E-value=8.5e-19 Score=139.87 Aligned_cols=79 Identities=94% Similarity=1.267 Sum_probs=76.0
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|+|++.+|+++.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999999999998
No 16
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.77 E-value=8.2e-19 Score=139.59 Aligned_cols=79 Identities=18% Similarity=0.407 Sum_probs=76.9
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+..|+|+|++.+|+++.++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.||++|+|++|++|+|++|++||
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 4569999999999999999999999999999999999999999999999999999999999999999999999999998
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.1e-18 Score=135.71 Aligned_cols=79 Identities=77% Similarity=1.096 Sum_probs=73.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
.+|+|+|++.+|+++.++|++++||++||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGGG 80 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC---
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 3699999999999999999999999999999999999999999999999999999999999999999999999999983
No 18
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.77 E-value=1.5e-18 Score=135.48 Aligned_cols=80 Identities=34% Similarity=0.518 Sum_probs=77.3
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
+..|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+++++|++..|++||.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999994
No 19
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.77 E-value=1.8e-18 Score=131.32 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=74.7
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|+..+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999998
No 20
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=1.2e-18 Score=136.20 Aligned_cols=79 Identities=85% Similarity=1.225 Sum_probs=70.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
..|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG~ 86 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 86 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC------
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999999993
No 21
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=133.11 Aligned_cols=75 Identities=36% Similarity=0.595 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++|
T Consensus 5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999998764
No 22
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.76 E-value=2.4e-18 Score=136.91 Aligned_cols=78 Identities=94% Similarity=1.262 Sum_probs=74.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
.|+|+|++.+|+++.++|++++||.+||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|++||+
T Consensus 1 gm~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~ 78 (96)
T 3k9o_B 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYA 78 (96)
T ss_dssp -CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC--
T ss_pred CcEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999994
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=2.7e-18 Score=133.43 Aligned_cols=78 Identities=90% Similarity=1.218 Sum_probs=75.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+|+|+|++.+|+++.++|++++||.+||++|++.+++|+++|+|+|+|+.|+|+.+|++|+|+++++|++.+|++||
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999999998
No 24
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=136.21 Aligned_cols=77 Identities=38% Similarity=0.647 Sum_probs=72.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|+|++ |+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 4579999998 8999999999999999999999999999999999999999999999999999999999999999998
No 25
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.75 E-value=3.4e-18 Score=134.97 Aligned_cols=79 Identities=27% Similarity=0.411 Sum_probs=75.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|+|++..| ++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .+|++|||++|++|+|++|++||
T Consensus 13 ~~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 13 VRKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp SCCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred CCCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 4679999999888 899999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred C
Q 012736 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 92 ~ 92 (94)
T 2kan_A 92 A 92 (94)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=134.79 Aligned_cols=78 Identities=36% Similarity=0.590 Sum_probs=72.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+++||
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 27
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.75 E-value=2e-19 Score=147.33 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=97.9
Q ss_pred cCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeecce
Q 012736 74 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 153 (457)
Q Consensus 74 ~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~ 153 (457)
.++.+|+|++++|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++..++++++
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEe---eccCceEEeeecCCchHHH
Q 012736 154 QIFVK---TLTGKTITLEVESSDTIDN 177 (457)
Q Consensus 154 ~i~v~---~~~g~~~~~~v~~~~tV~~ 177 (457)
.++++ ...|++++++|.+++||..
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99988 5578999999999998853
No 28
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=2.9e-18 Score=133.96 Aligned_cols=77 Identities=56% Similarity=0.924 Sum_probs=73.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~ 77 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~ 77 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGG 77 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC---
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999988875
No 29
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.74 E-value=5.4e-18 Score=138.23 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|+|+..+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999999998
No 30
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=6.7e-18 Score=132.34 Aligned_cols=79 Identities=37% Similarity=0.617 Sum_probs=76.0
Q ss_pred CceeeEEEcCCC-CEEEE-EecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g-~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|+|+..+| +++.+ +|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 579999999999 79999 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012736 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 86 ~ 86 (89)
T 1wy8_A 86 P 86 (89)
T ss_dssp S
T ss_pred C
Confidence 4
No 31
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.74 E-value=2.2e-18 Score=135.44 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=68.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|||+++.|++++++|.++|||.+||++|++++|+|+++|+|+|+|++|+|+.||++|+|.+++|+||+
T Consensus 29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~ 98 (100)
T 1uh6_A 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELY 98 (100)
T ss_dssp EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999999999985
No 32
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-18 Score=132.98 Aligned_cols=74 Identities=22% Similarity=0.425 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEec--ccccHHHHHHHH-hhhhCCCCccceEeeccEEccCCCccccccc-ccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~--~~dtv~~ik~ki-~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~~ 74 (457)
|+|||++++|++++++|+ ++|||.++|++| ++++|+|+++|+|+|+|++|+|+.+|++|+| .+++++++..++.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~ 79 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 79 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCC
Confidence 899999999999999866 999999999999 9999999999999999999999999999999 7999999988753
No 33
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=138.18 Aligned_cols=78 Identities=94% Similarity=1.272 Sum_probs=75.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|+|+..+|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|.+|++||
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999999998
No 34
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.73 E-value=9.8e-18 Score=131.91 Aligned_cols=77 Identities=91% Similarity=1.263 Sum_probs=74.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
...|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999986
No 35
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.3e-19 Score=144.75 Aligned_cols=104 Identities=73% Similarity=0.983 Sum_probs=98.3
Q ss_pred ecceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEecCCe
Q 012736 150 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 229 (457)
Q Consensus 150 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~ 229 (457)
.+.++|+|++++|+.+.+++++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|++|+|.++++|+|+.+++++.
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~ 86 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGS 86 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEE---ccCCceEEEEeecCccHHH
Q 012736 230 QIFVK---TLTGKTITLEVESSDTIDN 253 (457)
Q Consensus 230 ~i~v~---~~~g~~~~~~v~~~~tV~~ 253 (457)
+++++ +..|++++++|++++||.+
T Consensus 87 ~~~~~~~~~~~g~~~~~~v~~~~~~~~ 113 (114)
T 2kdi_A 87 MGGAADEEELIRKAIELSLKESRNSGG 113 (114)
T ss_dssp CCSSCSSSHHHHHHHHSSSHHHHHGGG
T ss_pred eeeccccccccCceEEEEeccccccCC
Confidence 99988 4579999999999999864
No 36
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.73 E-value=8.2e-18 Score=134.27 Aligned_cols=91 Identities=81% Similarity=1.094 Sum_probs=75.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+.+++.+++
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~ 80 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPN 80 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC----
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCcEEEE
Q 012736 81 VKTLTGKTITL 91 (457)
Q Consensus 81 vk~~~g~~~~l 91 (457)
.++.+|+.-.+
T Consensus 81 ~~~v~~~~~~~ 91 (98)
T 1yx5_B 81 SSSVDKLAAAL 91 (98)
T ss_dssp -----------
T ss_pred cccCCCchhhh
Confidence 99998765443
No 37
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.73 E-value=5.4e-18 Score=130.83 Aligned_cols=73 Identities=33% Similarity=0.473 Sum_probs=70.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEE-ccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~-L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|||++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+. |+|+++|++|+|.+++++++++++
T Consensus 11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 8999999999999999999999999999999999999999999999999 999999999999999999998764
No 38
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.72 E-value=1.4e-17 Score=130.71 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=74.4
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+..|+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++||| +|++|+|+.|.+++
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPPQ 80 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC-
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCCC
Confidence 3579999999999999999999999999999999999999999999999999999999999999 89999999998876
No 39
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.72 E-value=9.2e-18 Score=131.25 Aligned_cols=87 Identities=29% Similarity=0.523 Sum_probs=71.8
Q ss_pred cccccceeEEEEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccC
Q 012736 61 IQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 140 (457)
Q Consensus 61 i~~~sti~l~~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~ 140 (457)
+..++++++..+.+..|+|+|++.+|+.+.++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+| +|
T Consensus 2 ~~~~~~~~~~~~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i-~g 80 (88)
T 4eew_A 2 MEPNDSTSTAVEEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GG 80 (88)
T ss_dssp -------------CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TT
T ss_pred CCCCCceEEeecCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC-CC
Confidence 45678899998888899999999999999999999999999999999999999999999999999999999999999 89
Q ss_pred CcceeEEE
Q 012736 141 STLHLVLR 148 (457)
Q Consensus 141 s~i~l~~~ 148 (457)
++||++.|
T Consensus 81 ~~i~lv~R 88 (88)
T 4eew_A 81 KVIHLVER 88 (88)
T ss_dssp EEEEEEEC
T ss_pred cEEEEEEC
Confidence 99999864
No 40
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.72 E-value=8.5e-18 Score=135.15 Aligned_cols=75 Identities=29% Similarity=0.437 Sum_probs=71.9
Q ss_pred CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccccc-------ccceeEEEE
Q 012736 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~-------~sti~l~~~ 72 (457)
|.||++...++ |++++|+++|||.+||++|++++|+|+++|+|+|+|++|+|++||++|+|.. ++|+||+++
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 89999999888 8899999999999999999999999999999999999999999999999999 999999998
Q ss_pred ecC
Q 012736 73 LRG 75 (457)
Q Consensus 73 ~~~ 75 (457)
..+
T Consensus 81 ~~~ 83 (118)
T 4ajy_B 81 ADD 83 (118)
T ss_dssp CSS
T ss_pred cCC
Confidence 644
No 41
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.72 E-value=8.4e-18 Score=128.67 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|+++|+|+|+|+.|+|++|+++|+|.+++++|++++.+++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999987763
No 42
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.72 E-value=2.5e-17 Score=131.44 Aligned_cols=77 Identities=95% Similarity=1.291 Sum_probs=74.7
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..|++||.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~ 77 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGR 77 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC-
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999983
No 43
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.72 E-value=8.8e-18 Score=135.82 Aligned_cols=73 Identities=29% Similarity=0.439 Sum_probs=69.9
Q ss_pred CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccc-------cccceeEEEE
Q 012736 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~-------~~sti~l~~~ 72 (457)
|+|||+...|+ +++++|+++|||.+||++|++++|||+++|+|+|+|++|+|++||++|+|. .+||+||+++
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 89999999887 699999999999999999999999999999999999999999999999999 7999999988
Q ss_pred e
Q 012736 73 L 73 (457)
Q Consensus 73 ~ 73 (457)
.
T Consensus 81 ~ 81 (118)
T 2fnj_B 81 A 81 (118)
T ss_dssp S
T ss_pred C
Confidence 3
No 44
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=1.1e-17 Score=131.40 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=70.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
++|+|+|+++.|+++.++|.|++||.+||++|++++|+|+++|+|+|+|++|+|+.||++|||+++++|+|+.
T Consensus 27 ~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 27 TMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp CEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 4599999999999999999999999999999999999999999999999999999999999999999999874
No 45
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.71 E-value=2e-17 Score=127.62 Aligned_cols=74 Identities=32% Similarity=0.472 Sum_probs=71.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCee-cCCCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ-LEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~-L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.-|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+. |+|+.+|++|||++|++|+|++|
T Consensus 9 ~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 9 SHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEEC
T ss_pred CceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEc
Confidence 359999999999999999999999999999999999999999999999999 99999999999999999999886
No 46
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.71 E-value=3.1e-17 Score=143.70 Aligned_cols=77 Identities=96% Similarity=1.293 Sum_probs=74.2
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||.+||.+|++++|+|+++|+|+|+|+.|+|+.+|++|||++|++|++++|++||.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999994
No 47
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.7e-17 Score=124.75 Aligned_cols=75 Identities=36% Similarity=0.657 Sum_probs=71.4
Q ss_pred CceeeEEEcCCCCEE-EEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 379 GGMQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~-~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
+.|+|+|++.+|+++ .++ |++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|++.+|+
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 469999999999885 999 999999999999999999999999999999999999999999999999999999986
No 48
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.71 E-value=1.4e-17 Score=132.37 Aligned_cols=76 Identities=18% Similarity=0.448 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|++|+|++||++|+|.++++||++++++++
T Consensus 22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987764
No 49
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.70 E-value=2.5e-17 Score=134.48 Aligned_cols=79 Identities=33% Similarity=0.468 Sum_probs=76.4
Q ss_pred cCceeeEEEcC---CCCEEEEEecC-CccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 378 RGGMQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~---~g~~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
+++|+|+|+++ +|+.+.++|++ ++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+|.+|+
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~ 104 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRE 104 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSS
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEc
Confidence 46799999998 88999999998 999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 012736 454 RGG 456 (457)
Q Consensus 454 ~GG 456 (457)
+||
T Consensus 105 ~GG 107 (111)
T 1we6_A 105 RSG 107 (111)
T ss_dssp CCS
T ss_pred CCC
Confidence 999
No 50
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.70 E-value=4.6e-17 Score=123.46 Aligned_cols=76 Identities=57% Similarity=0.952 Sum_probs=72.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++.+++
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987653
No 51
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.70 E-value=2.1e-17 Score=133.59 Aligned_cols=75 Identities=28% Similarity=0.431 Sum_probs=68.2
Q ss_pred eeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCC-------CCCEEEEEEe
Q 012736 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQ-------KESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~-------~~~~i~l~~r 452 (457)
|++|++...++ ++.++|.+++||++||.+|++++|||+++|||+|+|+.|+|++||++|||+ .++||+|++|
T Consensus 1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 55666655565 589999999999999999999999999999999999999999999999999 7999999999
Q ss_pred cCCC
Q 012736 453 LRGG 456 (457)
Q Consensus 453 ~~GG 456 (457)
.||
T Consensus 81 -~~g 83 (118)
T 2fnj_B 81 -ADD 83 (118)
T ss_dssp -SSS
T ss_pred -CCC
Confidence 665
No 52
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.70 E-value=3.4e-17 Score=128.58 Aligned_cols=74 Identities=34% Similarity=0.585 Sum_probs=71.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|||++++|++++++|.+++||.+||++|++++|+|+++|+|+|+|+.|+|+.+|++|+| +++++|++++.+.
T Consensus 6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC-CCcEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999 8999999998654
No 53
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=3.4e-17 Score=129.31 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=74.0
Q ss_pred CceeeEEEcCCCC--EEEEEecCCccHHHHHHHHhhhc--CCCCCCeEEEEcCeecCCCCccccc--CCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~~--gip~~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~l~~r 452 (457)
..|+|+|++.+|+ .+.++|++++||++||++|++.+ |+|+++|+|+|+|+.|+|+.+|++| +|+++++|+|++|
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeC
Confidence 4689999999888 67777889999999999999999 9999999999999999999999999 9999999999999
Q ss_pred cCCC
Q 012736 453 LRGG 456 (457)
Q Consensus 453 ~~GG 456 (457)
++||
T Consensus 86 ~~gg 89 (93)
T 1wgd_A 86 VKSG 89 (93)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9998
No 54
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.53 E-value=1.3e-18 Score=132.22 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=73.5
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 455 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++++|+||
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999998
No 55
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.69 E-value=3.2e-17 Score=128.21 Aligned_cols=76 Identities=58% Similarity=0.975 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887764
No 56
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=4e-17 Score=124.53 Aligned_cols=73 Identities=36% Similarity=0.643 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEE-EEE-ecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTI-TLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|+++ +++ |.+++||.++|++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 8999999999995 999 999999999999999999999999999999999999999999999999999999875
No 57
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.69 E-value=5.5e-17 Score=143.47 Aligned_cols=81 Identities=90% Similarity=1.184 Sum_probs=78.2
Q ss_pred ecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
....|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG 181 (189)
T 3q3f_A 102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 181 (189)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCC
T ss_pred cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCC
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 012736 457 F 457 (457)
Q Consensus 457 ~ 457 (457)
.
T Consensus 182 ~ 182 (189)
T 3q3f_A 182 G 182 (189)
T ss_dssp C
T ss_pred C
Confidence 3
No 58
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=5.2e-17 Score=126.79 Aligned_cols=76 Identities=87% Similarity=1.271 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887764
No 59
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.69 E-value=4.6e-17 Score=128.04 Aligned_cols=74 Identities=92% Similarity=1.261 Sum_probs=71.8
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++
T Consensus 18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rlr 91 (91)
T 3v6c_B 18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91 (91)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998764
No 60
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.6e-17 Score=129.27 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988764
No 61
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.69 E-value=5.7e-17 Score=130.36 Aligned_cols=77 Identities=30% Similarity=0.452 Sum_probs=70.5
Q ss_pred eeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCC-------CCEEEEEEe
Q 012736 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK-------ESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~-------~~~i~l~~r 452 (457)
|.+|++...++ ++.++|.+++||.+||.+|++++|+|+++|||+|+|+.|+|++||++|||++ +++|+|++|
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEEC
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEe
Confidence 56778776666 7888999999999999999999999999999999999999999999999999 999999999
Q ss_pred cCCCC
Q 012736 453 LRGGF 457 (457)
Q Consensus 453 ~~GG~ 457 (457)
..|+|
T Consensus 81 ~~~~f 85 (118)
T 4ajy_B 81 ADDTF 85 (118)
T ss_dssp CSSCC
T ss_pred cCCCc
Confidence 85543
No 62
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.68 E-value=5.5e-17 Score=132.72 Aligned_cols=76 Identities=26% Similarity=0.458 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEE-EEEecccccHHHHHHHH-----hhhhCCCC--ccceEeeccEEccCCCcccccccccc------cc
Q 012736 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE------ST 66 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki-----~~~~~ip~--~~q~l~~~g~~L~~~~tl~~y~i~~~------st 66 (457)
|+|+|++.+|+.+ +++++++|||.+||++| ++++|+|+ ++|+|+|+|++|+|++||++|+|..+ +|
T Consensus 17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~t 96 (126)
T 1se9_A 17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTT 96 (126)
T ss_dssp EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEE
T ss_pred EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEE
Confidence 7899999999988 79999999999999999 77889997 89999999999999999999999988 78
Q ss_pred eeEEEEecCc
Q 012736 67 LHLVLRLRGG 76 (457)
Q Consensus 67 i~l~~~~~~~ 76 (457)
+||+++++++
T Consensus 97 mhlVlrl~g~ 106 (126)
T 1se9_A 97 MHVIIQAPVT 106 (126)
T ss_dssp EEEEECCCSS
T ss_pred EEEEeccCCc
Confidence 9999988764
No 63
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.68 E-value=3.1e-17 Score=128.08 Aligned_cols=76 Identities=37% Similarity=0.616 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+++++
T Consensus 5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg 80 (88)
T 2hj8_A 5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGG 80 (88)
T ss_dssp EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999887654
No 64
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=123.23 Aligned_cols=77 Identities=39% Similarity=0.674 Sum_probs=73.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
...|+|+|+..+|+.+.++|++++||++||++|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++.+|++
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~ 81 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKPL 81 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCCC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999874
No 65
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.68 E-value=4.3e-17 Score=125.99 Aligned_cols=73 Identities=22% Similarity=0.424 Sum_probs=69.1
Q ss_pred ceeeEEEcCCCCEEEEEec--CCccHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 012736 380 GMQIFVKTLTGKTITLEVE--SSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~--~~~tV~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r 452 (457)
.|+|+|++..|++++++|+ +++||.+||++| ++..|+|+++|+|+|+|+.|+|+.+|++|+| .+|++|+|.++
T Consensus 1 mmqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~ 77 (87)
T 2lxa_A 1 MVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 77 (87)
T ss_dssp CCEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEEC
T ss_pred CEEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcC
Confidence 4899999999999999866 999999999999 9999999999999999999999999999999 69999999876
No 66
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.68 E-value=1e-16 Score=127.46 Aligned_cols=79 Identities=91% Similarity=1.240 Sum_probs=74.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 79 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i 79 (457)
|+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++...
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~ 80 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADL 80 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC----
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999888664
No 67
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1e-16 Score=127.96 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=74.7
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|+|+..+|+ +.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 20 ~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 20 PHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp TTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred CCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 45799999999886 7999999999999999999999999999999999999999999999999999999999999997
No 68
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=8.3e-17 Score=124.94 Aligned_cols=76 Identities=80% Similarity=1.167 Sum_probs=72.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999988764
No 69
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.67 E-value=8.7e-17 Score=126.85 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=72.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|||++++| +++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ .+|++|+|.++++++++++++++
T Consensus 16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg 91 (94)
T 2kan_A 16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINR 91 (94)
T ss_dssp EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSS
T ss_pred EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCC
Confidence 7899999988 999999999999999999999999999999999999999999 99999999999999999988764
No 70
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.67 E-value=1e-16 Score=140.46 Aligned_cols=126 Identities=65% Similarity=0.859 Sum_probs=96.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|||+|++++|++++++|++++||.++|++|+++.|+|+++|+|+|+|+.|+|+++|++|+|.+++++|++++++++.+-.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~k~~ 80 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGGET 80 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC---CC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEeccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887766
Q ss_pred EEccC-Cc--EEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCcccccc
Q 012736 81 VKTLT-GK--TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG 129 (457)
Q Consensus 81 vk~~~-g~--~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~ 129 (457)
|++.. |. .-.+.+.++.++.+-.+.+.-.. .+..+..|+-+-|.+-
T Consensus 81 vkfs~~Gd~g~~~i~l~~~~~~~~~~~~~~i~~---~~~~~~~fsl~yl~~~ 129 (169)
T 3l0w_B 81 IKFVADGDIGSGSVIIKPFVDMEHPETSIKLEM---DQPVDLTFGAKYLLDI 129 (169)
T ss_dssp EEEEEECSSCEEEEEECCBCCSSCGGGCBEEEE---SSCEEEEEEHHHHHHH
T ss_pred ccccccCcccceeEEEecCCCCCCcccceEEec---CCcceEEEhHHHHHHH
Confidence 76542 32 34566666555432222111111 1234566666655543
No 71
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.67 E-value=1.6e-16 Score=120.49 Aligned_cols=76 Identities=95% Similarity=1.320 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|++++++|++++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 72
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1e-16 Score=125.93 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=64.0
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
++.++++|++++||++||++|++++|+|+++|+|+|+|+.|+|+.||++|||++|++| ++++++|.
T Consensus 29 ~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg~ 94 (100)
T 1wju_A 29 DRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQS 94 (100)
T ss_dssp SSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCCC
T ss_pred CcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECCC
Confidence 7789999999999999999999999999999999999999999999999999999999 99999985
No 73
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1e-16 Score=125.00 Aligned_cols=76 Identities=34% Similarity=0.532 Sum_probs=73.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG 83 (87)
T 1wh3_A 8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSG 83 (87)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCC
T ss_pred EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988765
No 74
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=1.1e-16 Score=129.84 Aligned_cols=74 Identities=24% Similarity=0.419 Sum_probs=68.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhh------hhCC--CCccceEeeccEEccCCCcccccccccc--cceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~~i--p~~~q~l~~~g~~L~~~~tl~~y~i~~~--sti~l~ 70 (457)
|+|+|+++.|++++++|++++||.+||++|++ ++|+ |+++|+|+|+|++|+|++||++|+|..+ +++||+
T Consensus 17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLv 96 (116)
T 1wgh_A 17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 96 (116)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 78999999999999999999999999999999 7786 6999999999999999999999999755 789999
Q ss_pred EEec
Q 012736 71 LRLR 74 (457)
Q Consensus 71 ~~~~ 74 (457)
+++.
T Consensus 97 lr~~ 100 (116)
T 1wgh_A 97 ARET 100 (116)
T ss_dssp ECSS
T ss_pred ccCC
Confidence 8765
No 75
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.67 E-value=2.9e-16 Score=121.86 Aligned_cols=76 Identities=29% Similarity=0.501 Sum_probs=71.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
+.+|+|+|++.+|+.+.++|++++||++||++|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+.
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 468999999999999999999999999999999998 8999999999999999999999999999999999998764
No 76
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=6.6e-17 Score=128.48 Aligned_cols=77 Identities=27% Similarity=0.340 Sum_probs=74.7
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|+|+.. |+.+.++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||
T Consensus 16 ~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 16 RIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp CEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred CcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 4689999998 9999999999999999999999999999999999999999999999999999999999999999998
No 77
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.66 E-value=4.4e-17 Score=144.05 Aligned_cols=82 Identities=91% Similarity=1.230 Sum_probs=79.8
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF 80 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~~i~ 80 (457)
|||||++++|++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++++..++
T Consensus 106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~f 185 (189)
T 3q3f_A 106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTF 185 (189)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCC
T ss_pred eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcce
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred EE
Q 012736 81 VK 82 (457)
Q Consensus 81 vk 82 (457)
||
T Consensus 186 vk 187 (189)
T 3q3f_A 186 TK 187 (189)
T ss_dssp CC
T ss_pred Ee
Confidence 75
No 78
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=6.6e-17 Score=128.83 Aligned_cols=78 Identities=24% Similarity=0.393 Sum_probs=73.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC---------------CCeEEEEcCeecC-CCCcccccCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP---------------DQQRLIFAGKQLE-DGRTLADYNIQ 442 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~---------------~~q~l~~~g~~L~-d~~tL~~~~i~ 442 (457)
..|+|+|++++|++++++|.+++||++||++|++++++|+ ++|+|+|+|+.|. |++||++|||+
T Consensus 6 ~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~ 85 (105)
T 1v2y_A 6 SGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIR 85 (105)
T ss_dssp CSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCC
T ss_pred CcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCC
Confidence 4699999999999999999999999999999999999988 4679999999996 66899999999
Q ss_pred CCCEEEEEEecCCC
Q 012736 443 KESTLHLVLRLRGG 456 (457)
Q Consensus 443 ~~~~i~l~~r~~GG 456 (457)
+|++|+++.|++|.
T Consensus 86 ~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 86 NRDEVSFIKKLGQK 99 (105)
T ss_dssp SSEEEEEEECSCSC
T ss_pred CCCEEEEEehhccC
Confidence 99999999999985
No 79
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.66 E-value=1.4e-16 Score=125.82 Aligned_cols=72 Identities=21% Similarity=0.440 Sum_probs=67.9
Q ss_pred CeEEEEcCCCcEEEE--EecccccHHHHHHHH-hhhhCCCCccceEeeccEEccCCCccccccc-ccccceeEEEE
Q 012736 1 MQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~--~v~~~dtv~~ik~ki-~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~ 72 (457)
|+|+|++++|++|++ +|.+++||.++|++| +++.|+|+++|+|+|+|+.|+|+.+|++|+| .++++++++++
T Consensus 20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvs 95 (98)
T 4a20_A 20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIK 95 (98)
T ss_dssp EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEe
Confidence 799999999998887 555999999999999 9999999999999999999999999999999 99999999875
No 80
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=1.9e-16 Score=122.90 Aligned_cols=76 Identities=92% Similarity=1.254 Sum_probs=73.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 81
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-16 Score=125.50 Aligned_cols=74 Identities=36% Similarity=0.620 Sum_probs=71.4
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++ |++++++|++++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++++++
T Consensus 20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999988764
No 82
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.7e-16 Score=123.18 Aligned_cols=75 Identities=29% Similarity=0.573 Sum_probs=71.5
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 455 (457)
|+|+|++.+|+.+.++|++++||++||.+|++. +|+|+++|+|+|+|+.|+|+.+|++|||++|++|++..+...
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCC
Confidence 789999999999999999999999999999999 899999999999999999999999999999999999987543
No 83
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.66 E-value=2.3e-16 Score=129.11 Aligned_cols=79 Identities=25% Similarity=0.440 Sum_probs=73.8
Q ss_pred cCceeeEEEcCCCCEE-EEEecCCccHHHHHHHH-----hhhcCCCC--CCeEEEEcCeecCCCCcccccCCCCC-----
Q 012736 378 RGGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKI-----QDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKE----- 444 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i-----~~~~gip~--~~q~l~~~g~~L~d~~tL~~~~i~~~----- 444 (457)
...|+|++++.+|+.+ .+++++++||++||++| ++++|+|+ ++|+|+|.|+.|+|+.||++|+|+.|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 4679999999999888 79999999999999999 66779997 89999999999999999999999998
Q ss_pred -CEEEEEEecCCC
Q 012736 445 -STLHLVLRLRGG 456 (457)
Q Consensus 445 -~~i~l~~r~~GG 456 (457)
++++|++|++||
T Consensus 94 v~tmhlVlrl~g~ 106 (126)
T 1se9_A 94 VTTMHVIIQAPVT 106 (126)
T ss_dssp CEEEEEEECCCSS
T ss_pred cEEEEEEeccCCc
Confidence 789999999997
No 84
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.66 E-value=2.6e-16 Score=129.19 Aligned_cols=79 Identities=29% Similarity=0.561 Sum_probs=72.4
Q ss_pred CceeeEEEcC----------CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEE
Q 012736 379 GGMQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLH 448 (457)
Q Consensus 379 ~~~~i~v~~~----------~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~ 448 (457)
.+++|.|+.. +|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~ 103 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIH 103 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEE
T ss_pred CCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEE
Confidence 4556666553 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCC
Q 012736 449 LVLRLRGGF 457 (457)
Q Consensus 449 l~~r~~GG~ 457 (457)
|++|++||.
T Consensus 104 lv~rl~GGk 112 (115)
T 1we7_A 104 LALKERSGP 112 (115)
T ss_dssp EEECCCSCC
T ss_pred EEEEcCCCC
Confidence 999999993
No 85
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=2e-16 Score=123.94 Aligned_cols=76 Identities=37% Similarity=0.627 Sum_probs=72.9
Q ss_pred CeEEEEcCCC-cEEEE-EecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTG-KTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g-~~~~~-~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+| +++++ +|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG 85 (89)
T 1wy8_A 8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSG 85 (89)
T ss_dssp EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCS
T ss_pred EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCC
Confidence 7999999999 79999 5999999999999999999999999999999999999999999999999999999988765
No 86
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=4.6e-17 Score=129.73 Aligned_cols=76 Identities=24% Similarity=0.385 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCc---------------cceEeeccEEcc-CCCcccccccccc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD---------------QQRLIFAGKQLE-DGRTLADYNIQKE 64 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~---------------~q~l~~~g~~L~-~~~tl~~y~i~~~ 64 (457)
|+|+|++++|++++++|.+++||.+||++|++++|+|+. +|+|+|+|+.|. |++||++|+|.++
T Consensus 8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g 87 (105)
T 1v2y_A 8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR 87 (105)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence 899999999999999999999999999999999999884 569999999996 6799999999999
Q ss_pred cceeEEEEecCc
Q 012736 65 STLHLVLRLRGG 76 (457)
Q Consensus 65 sti~l~~~~~~~ 76 (457)
+++||++++++.
T Consensus 88 ~~l~lv~~lr~~ 99 (105)
T 1v2y_A 88 DEVSFIKKLGQK 99 (105)
T ss_dssp EEEEEEECSCSC
T ss_pred CEEEEEehhccC
Confidence 999999987754
No 87
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.47 E-value=7.3e-18 Score=128.00 Aligned_cols=75 Identities=33% Similarity=0.588 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++++
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 899999999999999999999999999999999999999999999999999999999999999999999998764
No 88
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.65 E-value=7.9e-18 Score=140.96 Aligned_cols=77 Identities=96% Similarity=1.320 Sum_probs=0.4
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
|+|+|++.+|+++.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.||++|||++|++|+|++|++||.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999993
No 89
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.5e-16 Score=128.48 Aligned_cols=74 Identities=22% Similarity=0.437 Sum_probs=70.3
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++++..
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~ 75 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQK 75 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC-
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999998643
No 90
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.3e-16 Score=127.39 Aligned_cols=74 Identities=22% Similarity=0.409 Sum_probs=70.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
.|+|+|++.+|+++.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|.++.
T Consensus 1 mm~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~ 74 (106)
T 3m62_B 1 MVSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQ 74 (106)
T ss_dssp --CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC
T ss_pred CEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999874
No 91
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.65 E-value=2.6e-16 Score=128.18 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=73.2
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999988764
No 92
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.65 E-value=4.2e-16 Score=129.37 Aligned_cols=77 Identities=30% Similarity=0.367 Sum_probs=71.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|+|++. |+.+.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.|++||
T Consensus 31 ~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 31 KIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp CCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred CcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 4699999998 9999999999999999999999999999999999999999999999999999999999999999998
No 93
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.64 E-value=1.1e-17 Score=143.00 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|+|++.+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|++||
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999999
No 94
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.64 E-value=5.2e-16 Score=122.61 Aligned_cols=76 Identities=20% Similarity=0.413 Sum_probs=69.8
Q ss_pred cCceeeEEEcCCCCEEEE--EecCCccHHHHHHHH-hhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEec
Q 012736 378 RGGMQIFVKTLTGKTITL--EVESSDTIDNVKAKI-QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 453 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l--~v~~~~tV~~lK~~i-~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r~ 453 (457)
...|+|+|++.+|+++++ +|++++||++||++| ++..|+|+++|+|+|+|+.|+|+.+|++||| ++|++|++.++-
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECC
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeC
Confidence 467999999999998777 566999999999999 8899999999999999999999999999999 999999998753
No 95
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.6e-16 Score=122.71 Aligned_cols=73 Identities=30% Similarity=0.597 Sum_probs=70.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhh---hCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.+||++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.++++++++.+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeC
Confidence 899999999999999999999999999999999 8999999999999999999999999999999999998853
No 96
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=3e-16 Score=125.94 Aligned_cols=78 Identities=21% Similarity=0.397 Sum_probs=73.3
Q ss_pred CceeeEEEcCCC----CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEec
Q 012736 379 GGMQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 379 ~~~~i~v~~~~g----~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~ 453 (457)
..|+|+|++.++ +++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|..+.
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~ 85 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKD 85 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCC
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECC
Confidence 358999998754 7999999999999999999999999999999999999999988 69999999999999999999
Q ss_pred CCC
Q 012736 454 RGG 456 (457)
Q Consensus 454 ~GG 456 (457)
+||
T Consensus 86 ~gg 88 (102)
T 1v5o_A 86 NVG 88 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 998
No 97
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.64 E-value=7.5e-16 Score=117.08 Aligned_cols=71 Identities=34% Similarity=0.574 Sum_probs=68.8
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+|++ +|+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|++..+
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 8999999 8999999999999999999999999999999999999999999999999999999999999875
No 98
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=4.9e-16 Score=125.69 Aligned_cols=77 Identities=34% Similarity=0.442 Sum_probs=73.9
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|+|+...|+ +.++|++++||.+||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..|++||
T Consensus 16 ~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 16 HLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp SEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred ceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 4589999998886 7999999999999999999999999999999999999999999999999999999999999998
No 99
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.64 E-value=9.6e-16 Score=122.60 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=74.3
Q ss_pred ecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 377 LRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 377 ~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
....|+|+|+.. |+.+.++|++++||++||.+|++.+|+|++.|+|+|+|+.|+|+.+|++|||++|++|+|..++++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~~ 100 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQNR 100 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSSC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 456799999998 8899999999999999999999999999999999999999999999999999999999999998764
No 100
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.64 E-value=5.3e-16 Score=120.33 Aligned_cols=73 Identities=30% Similarity=0.540 Sum_probs=69.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhh---hCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~---~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.++|++|+++ .|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.
T Consensus 6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~ 81 (85)
T 2wyq_A 6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTK 81 (85)
T ss_dssp EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC-
T ss_pred EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcC
Confidence 799999999999999999999999999999998 8999999999999999999999999999999999998764
No 101
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=6.1e-16 Score=125.03 Aligned_cols=79 Identities=27% Similarity=0.449 Sum_probs=74.8
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|+|++.+|+++.++|++++||++||.+|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|+.+...+
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999987654
No 102
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=5.5e-16 Score=119.05 Aligned_cols=73 Identities=40% Similarity=0.690 Sum_probs=70.8
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++.+|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|+++++
T Consensus 8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999998765
No 103
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.1e-15 Score=124.04 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=71.5
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhh------hcCC--CCCCeEEEEcCeecCCCCcccccCCCCC--CEE
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGI--PPDQQRLIFAGKQLEDGRTLADYNIQKE--STL 447 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gi--p~~~q~l~~~g~~L~d~~tL~~~~i~~~--~~i 447 (457)
...|+|+|++..|++++++|++++||++||++|++ ++++ |+++|||+|.|+.|+|+.||++|+|..+ ++|
T Consensus 14 ~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tl 93 (116)
T 1wgh_A 14 ADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVM 93 (116)
T ss_dssp SSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEE
Confidence 35699999999999999999999999999999999 6675 6999999999999999999999999866 678
Q ss_pred EEEEecCCC
Q 012736 448 HLVLRLRGG 456 (457)
Q Consensus 448 ~l~~r~~GG 456 (457)
||++|+.+.
T Consensus 94 hLvlr~~~~ 102 (116)
T 1wgh_A 94 HLVARETLP 102 (116)
T ss_dssp EEEECSSCS
T ss_pred EEEccCCCC
Confidence 888887653
No 104
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=128.96 Aligned_cols=75 Identities=24% Similarity=0.378 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhh------hhCCC--CccceEeeccEEccCCCccccccccccc--ceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~------~~~ip--~~~q~l~~~g~~L~~~~tl~~y~i~~~s--ti~l~ 70 (457)
|+|+|+++.|++++++|++++||.+||++|++ ++|+| +++|+|+|+|+.|+|++||++|+|..++ ++||+
T Consensus 18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv 97 (125)
T 2gow_A 18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLV 97 (125)
T ss_dssp EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEE
T ss_pred EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEE
Confidence 68999999999999999999999999999999 88985 8999999999999999999999998665 78998
Q ss_pred EEecC
Q 012736 71 LRLRG 75 (457)
Q Consensus 71 ~~~~~ 75 (457)
++++.
T Consensus 98 ~r~~~ 102 (125)
T 2gow_A 98 ARETL 102 (125)
T ss_dssp ECSCC
T ss_pred ecCCC
Confidence 88654
No 105
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.4e-16 Score=127.32 Aligned_cols=91 Identities=32% Similarity=0.533 Sum_probs=67.7
Q ss_pred cccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccc
Q 012736 359 TLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD 438 (457)
Q Consensus 359 ~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~ 438 (457)
..++|.++ +|.++.......|.|+|++ .|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++
T Consensus 9 ~~~~~~~~--~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ 85 (101)
T 3m63_B 9 PMSDYDIP--TTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVES 85 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTT
T ss_pred CccccCCC--cceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHH
Confidence 45677775 5666665555567888887 88999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCEEEEEEe
Q 012736 439 YNIQKESTLHLVLR 452 (457)
Q Consensus 439 ~~i~~~~~i~l~~r 452 (457)
|||++|++|+|+.+
T Consensus 86 ~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 86 YHIQDGHSVHLVKS 99 (101)
T ss_dssp TTCCTTEEEEECCC
T ss_pred CCCCCCCEEEEEeC
Confidence 99999999999865
No 106
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=4.4e-16 Score=122.86 Aligned_cols=76 Identities=29% Similarity=0.482 Sum_probs=71.6
Q ss_pred CeEEEEcCCCc--EEEEEecccccHHHHHHHHhhhh--CCCCccceEeeccEEccCCCccccc--ccccccceeEEEEec
Q 012736 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDKE--GIPPDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~~--~ip~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~~~~~ 74 (457)
|+|+|++.+|+ +++++|.+++||.++|++|+++. |+|+++|+|+|.|+.|+|+.+|++| +|.+++++||+++++
T Consensus 8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~ 87 (93)
T 1wgd_A 8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVK 87 (93)
T ss_dssp CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCC
T ss_pred EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCC
Confidence 79999999998 77888889999999999999998 9999999999999999999999999 999999999998876
Q ss_pred Cc
Q 012736 75 GG 76 (457)
Q Consensus 75 ~~ 76 (457)
++
T Consensus 88 gg 89 (93)
T 1wgd_A 88 SG 89 (93)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 107
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.63 E-value=6.4e-16 Score=122.42 Aligned_cols=73 Identities=23% Similarity=0.240 Sum_probs=68.7
Q ss_pred CeEEEEcCCC--cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccccc-ccccceeEEEEe
Q 012736 1 MQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i-~~~sti~l~~~~ 73 (457)
|+|||++..| .+++++|.|++||.+||++|++++|+|+++|+++|+|+.++|++||++|+| .+++++||++-.
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~~ 100 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLLS 100 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEECC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEEe
Confidence 6899999875 799999999999999999999999999999999999999999999999999 699999998753
No 108
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.63 E-value=6.2e-16 Score=121.50 Aligned_cols=71 Identities=23% Similarity=0.294 Sum_probs=64.2
Q ss_pred EEEcCC----CcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 4 FVKTLT----GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 4 ~~~~~~----g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
-|+..+ |++++++|++++||.++|++|++++|+|+++|+|+|+|++|+|++||++|+|.+++++ +++++++
T Consensus 19 ~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 19 EVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp EEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred EEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 344555 7899999999999999999999999999999999999999999999999999999999 6665553
No 109
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=9.2e-16 Score=126.33 Aligned_cols=78 Identities=23% Similarity=0.342 Sum_probs=72.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhh------hcCCC--CCCeEEEEcCeecCCCCcccccCCCCCC--EEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD------KEGIP--PDQQRLIFAGKQLEDGRTLADYNIQKES--TLH 448 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~------~~gip--~~~q~l~~~g~~L~d~~tL~~~~i~~~~--~i~ 448 (457)
..|+|+|++.+|++++++|++++||++||++|++ ++|+| +++|+|+|.|+.|+|+.||++|+|..++ +++
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMH 95 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEE
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEE
Confidence 4589999999999999999999999999999999 78884 9999999999999999999999999776 789
Q ss_pred EEEecCCC
Q 012736 449 LVLRLRGG 456 (457)
Q Consensus 449 l~~r~~GG 456 (457)
|++|++||
T Consensus 96 lv~r~~~~ 103 (125)
T 2gow_A 96 LVARETLP 103 (125)
T ss_dssp EEECSCCS
T ss_pred EEecCCCC
Confidence 99999876
No 110
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.61 E-value=1.3e-15 Score=115.82 Aligned_cols=72 Identities=33% Similarity=0.559 Sum_probs=69.1
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++ +|++++++|.+++||.++|++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++.++
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEcC
Confidence 7899999 99999999999999999999999999999999999999999999999999999999999998653
No 111
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.3e-16 Score=124.51 Aligned_cols=93 Identities=31% Similarity=0.518 Sum_probs=67.6
Q ss_pred cCcccccccccCCcceeEEEeecceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCc
Q 012736 129 GRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 208 (457)
Q Consensus 129 ~~tl~~y~i~~~s~i~l~~~~~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL 208 (457)
...+++|.| +++.++..+....+.|+|+. +|+.+.++|++++||.+||++|++..|+|+++|+|+|+|+.|+|+.+|
T Consensus 7 ~~~~~~~~~--~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDI--PTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ------------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCC--CcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 457889988 46667766666667888887 899999999999999999999999999999999999999999999999
Q ss_pred cccCcCcCcEEEEEEE
Q 012736 209 ADYNIQKESTLHLVLR 224 (457)
Q Consensus 209 ~~y~i~~~~~i~l~~~ 224 (457)
++|||++|++|+|+.+
T Consensus 84 ~~~gI~~g~tI~lv~~ 99 (101)
T 3m63_B 84 ESYHIQDGHSVHLVKS 99 (101)
T ss_dssp TTTTCCTTEEEEECCC
T ss_pred HHCCCCCCCEEEEEeC
Confidence 9999999999999865
No 112
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=1e-15 Score=123.74 Aligned_cols=74 Identities=28% Similarity=0.525 Sum_probs=71.3
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||.+|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++.+.+
T Consensus 24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~ 97 (106)
T 1ttn_A 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQP 97 (106)
T ss_dssp EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCS
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999988643
No 113
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.60 E-value=9.2e-16 Score=121.52 Aligned_cols=70 Identities=24% Similarity=0.394 Sum_probs=65.2
Q ss_pred CeEEEEcCCCc--EEEEEecccccHHHHHHHHhhh-hCCC-CccceEeeccEEccCCCccccc--ccccccceeEE
Q 012736 1 MQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIP-PDQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~--~~~~~v~~~dtv~~ik~ki~~~-~~ip-~~~q~l~~~g~~L~~~~tl~~y--~i~~~sti~l~ 70 (457)
|+|+|++++|+ +++++|.+++||.+||++|+++ +|+| +++|+|+|+|++|+|+++|++| +|.+++++||+
T Consensus 24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 78999999998 7899999999999999999986 6766 4999999999999999999999 99999999984
No 114
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.59 E-value=1.8e-15 Score=120.76 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|+ ++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++++.++
T Consensus 23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 115
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=121.79 Aligned_cols=76 Identities=96% Similarity=1.322 Sum_probs=72.9
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++.+|++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999987763
No 116
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.59 E-value=5.2e-15 Score=117.20 Aligned_cols=73 Identities=23% Similarity=0.245 Sum_probs=68.0
Q ss_pred ceeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCC-CCCCEEEEEEe
Q 012736 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI-QKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i-~~~~~i~l~~r 452 (457)
.|+|+|++..+ .+++++|.|++||++||++|++++|+||+.|||+|+|+.++|+.||++||| ++|++++|.+.
T Consensus 24 ~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 24 RLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 48899998874 689999999999999999999999999999999999999999999999999 59999999873
No 117
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.58 E-value=1.1e-16 Score=133.93 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++++|++++++|++++||.+||++|++..|+|++.|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG 76 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999887765
No 118
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.58 E-value=1.4e-15 Score=120.80 Aligned_cols=75 Identities=28% Similarity=0.373 Sum_probs=71.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++. |++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|+|.+++++|++++++++
T Consensus 18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999876653
No 119
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=1.5e-15 Score=123.89 Aligned_cols=76 Identities=33% Similarity=0.468 Sum_probs=72.9
Q ss_pred CeEEEEcC---CCcEEEEEecc-cccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTL---TGKTITLEVES-SDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~---~g~~~~~~v~~-~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|+++ +|++++++|.+ ++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 68999999 89999999998 999999999999999999999999999999999999999999999999999887765
No 120
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.58 E-value=1.4e-16 Score=136.24 Aligned_cols=76 Identities=97% Similarity=1.333 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|||+|++++|++++++|++++||.+||++|++.+|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++++++++
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999987764
No 121
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.56 E-value=6.6e-15 Score=117.70 Aligned_cols=73 Identities=33% Similarity=0.450 Sum_probs=70.2
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++. |++++++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+++
T Consensus 26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCC
Confidence 78999999 89999999999999999999999999999999999999999999999999999999999988754
No 122
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.56 E-value=6.1e-15 Score=122.37 Aligned_cols=75 Identities=31% Similarity=0.401 Sum_probs=69.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|+|++. |++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|.+|+|.+++++|++.+.+++
T Consensus 33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg 107 (125)
T 1j8c_A 33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPN 107 (125)
T ss_dssp EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC----
T ss_pred EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCC
Confidence 78999999 9999999999999999999999999999999999999999999999999999999999999886654
No 123
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.56 E-value=2.6e-16 Score=137.92 Aligned_cols=71 Identities=30% Similarity=0.415 Sum_probs=0.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|||||++++|++++|+|+++|||.+||++|++++|||+++|+|+|+|++|+|+++|+ ++|||||+++++++
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG 71 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGG 71 (189)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCC
Confidence 899999999999999999999999999999999999999999999999999999998 89999999998776
No 124
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.55 E-value=4.5e-15 Score=117.51 Aligned_cols=72 Identities=24% Similarity=0.358 Sum_probs=65.6
Q ss_pred CceeeEEEcCCCC--EEEEEecCCccHHHHHHHHhhh-cCCCC-CCeEEEEcCeecCCCCccccc--CCCCCCEEEEE
Q 012736 379 GGMQIFVKTLTGK--TITLEVESSDTIDNVKAKIQDK-EGIPP-DQQRLIFAGKQLEDGRTLADY--NIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~--~~~l~v~~~~tV~~lK~~i~~~-~gip~-~~q~l~~~g~~L~d~~tL~~~--~i~~~~~i~l~ 450 (457)
..|+|+|++++|+ .++++|++++||++||++|+++ .|+|| ++|||+|.|+.|+|+.+|++| +|+++++|+|+
T Consensus 22 ~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 22 HPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp -CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred CeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 5799999999988 6799999999999999999996 56665 999999999999999999999 99999999974
No 125
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.55 E-value=3.4e-16 Score=137.16 Aligned_cols=72 Identities=29% Similarity=0.394 Sum_probs=0.4
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
|+|||++++|++++++|++++||.+||.+|++.+|||+++|+|+|+|++|+|+.||+ ++|||+|++|++||.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs-----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT-----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------------------------------------C
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc-----CCCEEEEEEecCCCc
Confidence 789999999999999999999999999999999999999999999999999999999 899999999999993
No 126
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.55 E-value=4.9e-15 Score=118.78 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=70.3
Q ss_pred CeEEEEcCCC----cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTG----KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g----~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+| ++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+ ++|++|+|.+++++|++.+.++
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 7999999755 7999999999999999999999999999999999999999887 6999999999999999887654
Q ss_pred c
Q 012736 76 G 76 (457)
Q Consensus 76 ~ 76 (457)
+
T Consensus 88 g 88 (102)
T 1v5o_A 88 G 88 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 127
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=8.9e-15 Score=118.22 Aligned_cols=74 Identities=35% Similarity=0.490 Sum_probs=70.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|+|++.+|+ +.++|.+++||.+||++|+++.|+|++.|+|+|+|+.|+|+++|++|+|.++++||++.+.++
T Consensus 18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 78999999997 799999999999999999999999999999999999999999999999999999999987654
No 128
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.54 E-value=1.9e-14 Score=112.82 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=76.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
+..|+|+|++.+|+.+.++|.+++++..|+.+++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||+
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999994
No 129
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.53 E-value=2.4e-14 Score=110.63 Aligned_cols=69 Identities=29% Similarity=0.459 Sum_probs=64.8
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
++++..+|+.+.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|..
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~ 82 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMA 82 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEEC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEE
Confidence 455667899999999999999999999999999999999999999999999999999999999999875
No 130
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.52 E-value=3e-14 Score=112.81 Aligned_cols=74 Identities=27% Similarity=0.410 Sum_probs=70.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCC-CcccccCCCCCCEEEEEEecCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~~G 455 (457)
..|+|+|++.+|+.+.++|++++||.+||.+|++.+ +++|+|+|+|+.|+|+ .+|++|||++|++|+|+.+..+
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 569999999999999999999999999999999998 8999999999999999 9999999999999999998655
No 131
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=6.9e-15 Score=116.26 Aligned_cols=72 Identities=19% Similarity=0.298 Sum_probs=67.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee--ccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~--~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|++|+.+.+|++++++|++++||.+||++|++++|||+++|+|++ .|+ |+|+.+|++|+|..++++|++++.
T Consensus 9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecC
Confidence 788999999999999999999999999999999999999999986 566 999999999999999999998864
No 132
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.52 E-value=2e-14 Score=112.40 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=68.7
Q ss_pred CceeeEEEcCCCCEEEE-EecCCccHHHHHHHHhhhcCCCCCCeEEE---EcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l-~v~~~~tV~~lK~~i~~~~gip~~~q~l~---~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+. .|+++.+ +|++++||.+||++|++++|+|+++|+|+ |+|+.|+|+.+|++|||++|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~ 82 (90)
T 1v5t_A 6 SGLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGT 82 (90)
T ss_dssp CSCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECC
T ss_pred ceEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEec
Confidence 468999996 7899999 99999999999999999999999999999 9999999999999999999999998753
No 133
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.7e-14 Score=112.54 Aligned_cols=73 Identities=16% Similarity=0.294 Sum_probs=68.3
Q ss_pred ceeeEEE-cCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 380 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 380 ~~~i~v~-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+.|.|+ ...|+.+++.++++.||.+||+.++...++|++.|+|+|+|+.|.|+.||++|||++|.||||+.+
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~ 88 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIF 88 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEE
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEe
Confidence 4566766 667889999999999999999999999999999999999999999999999999999999999987
No 134
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.1e-14 Score=113.08 Aligned_cols=69 Identities=23% Similarity=0.305 Sum_probs=64.4
Q ss_pred CeEEEEcCCCcEE--EE-EecccccHHHHHHHHhh-hhCCCCccceEeec--cEEccCCCcccccccccccceeE
Q 012736 1 MQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 69 (457)
Q Consensus 1 ~~i~~~~~~g~~~--~~-~v~~~dtv~~ik~ki~~-~~~ip~~~q~l~~~--g~~L~~~~tl~~y~i~~~sti~l 69 (457)
|+|+|++..|+.+ ++ +|+|++||.+||++|++ +.|+|+++|+|+|. |+.|+|++||++|+|.+++++|+
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 8999999998775 58 99999999999999999 58999999999987 99999999999999999999876
No 135
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.51 E-value=2.3e-14 Score=117.49 Aligned_cols=76 Identities=29% Similarity=0.577 Sum_probs=70.4
Q ss_pred CeEEEEcC----------CCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTL----------TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~----------~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
++|.|+.+ +|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++|++
T Consensus 26 i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 26 VSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEE
T ss_pred EEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEE
Confidence 35677765 48999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCc
Q 012736 71 LRLRGG 76 (457)
Q Consensus 71 ~~~~~~ 76 (457)
++++++
T Consensus 106 ~rl~GG 111 (115)
T 1we7_A 106 LKERSG 111 (115)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 988765
No 136
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.50 E-value=4.8e-14 Score=113.98 Aligned_cols=76 Identities=28% Similarity=0.393 Sum_probs=70.0
Q ss_pred CceeeEEEcCCC---CEEEEEecC---------CccHHHHHHHHhhhc--CCCCCC-eEEEEcCeecCCCCcccccCCCC
Q 012736 379 GGMQIFVKTLTG---KTITLEVES---------SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQK 443 (457)
Q Consensus 379 ~~~~i~v~~~~g---~~~~l~v~~---------~~tV~~lK~~i~~~~--gip~~~-q~l~~~g~~L~d~~tL~~~~i~~ 443 (457)
..|+|+|+..++ +.+.+++++ ++||.+||++|++.+ |+|+++ |+|+|+|+.|+|+.+|++|||++
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~ 90 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQP 90 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCT
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCC
Confidence 458999999988 789999554 499999999999999 999999 99999999999999999999999
Q ss_pred CCEEEEEEecC
Q 012736 444 ESTLHLVLRLR 454 (457)
Q Consensus 444 ~~~i~l~~r~~ 454 (457)
|++|+|+.|..
T Consensus 91 g~~i~lv~~~~ 101 (107)
T 1x1m_A 91 GSTVHVLRKSW 101 (107)
T ss_dssp TCEEEEEESSC
T ss_pred CCEEEEEeCCC
Confidence 99999998764
No 137
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.50 E-value=2.8e-14 Score=111.61 Aligned_cols=72 Identities=21% Similarity=0.412 Sum_probs=68.5
Q ss_pred CeEEEEcCCCcEEEE-EecccccHHHHHHHHhhhhCCCCccceEe---eccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITL-EVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~-~v~~~dtv~~ik~ki~~~~~ip~~~q~l~---~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|+. +|+++++ +|.+++||.+||++|+++.|+|+++|+|+ |.|+.|+|+.+|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 7899996 8999999 99999999999999999999999999999 99999999999999999999999997653
No 138
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=3.2e-14 Score=112.47 Aligned_cols=72 Identities=18% Similarity=0.326 Sum_probs=66.8
Q ss_pred CceeeEEEcCCCCEE-EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~-~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+. .|+++ .++|++++||.+||++|++.+|+|+++|+|+|.|+.|+|+ +|++|||++|++|+|...
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~ 78 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGS 78 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEec
Confidence 458899995 68899 6999999999999999999999999999999999999999 999999999999998653
No 139
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.49 E-value=3.4e-14 Score=112.47 Aligned_cols=71 Identities=25% Similarity=0.364 Sum_probs=67.6
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCC-CcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~-~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++.+|+++.++|.+++||.+||++|+++. +++|+|+|+|+.|+|+ ++|++|+|.+++++|++++.+
T Consensus 8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~ 79 (95)
T 1wia_A 8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPP 79 (95)
T ss_dssp EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCC
Confidence 7999999999999999999999999999999998 8899999999999999 999999999999999988654
No 140
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.5e-14 Score=113.05 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=68.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
.|.+++....|++++++|++++||++||++|++++||||++|+|+| .|+ |+|+.+|++|+|++|++|+|+++-.
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~ 83 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDL 83 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSS
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCC
Confidence 5888888889999999999999999999999999999999999987 566 9999999999999999999988743
No 141
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.49 E-value=5e-14 Score=108.87 Aligned_cols=70 Identities=29% Similarity=0.452 Sum_probs=66.7
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
+++++.+|++++++|++++||.+||++|+++.|+|++.|+|+|+|+.|+|+.+|++|+|.++++++++.+
T Consensus 14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 5788899999999999999999999999999999999999999999999999999999999999998754
No 142
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.49 E-value=1.3e-13 Score=107.15 Aligned_cols=80 Identities=16% Similarity=0.379 Sum_probs=76.5
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
+..|+|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++..+++||+
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999994
No 143
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.48 E-value=4.9e-14 Score=111.42 Aligned_cols=71 Identities=17% Similarity=0.292 Sum_probs=66.8
Q ss_pred CeEEEEcCCCcEE-EEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTI-TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~-~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|+. +|+++ .++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+|+ +|++|+|.++++++|+...
T Consensus 8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~ 79 (96)
T 1wgg_A 8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSA 79 (96)
T ss_dssp EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCC
T ss_pred EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecc
Confidence 7899995 79999 5999999999999999999999999999999999999999 9999999999999997654
No 144
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.47 E-value=9.9e-14 Score=109.08 Aligned_cols=74 Identities=24% Similarity=0.453 Sum_probs=68.0
Q ss_pred CceeeEEEcCCCCEEEEEecCC-----ccHHHHHHHHhhhcCCCCCCeEEEEcCeecCC-CCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~-----~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d-~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+. .|+.+.++|+++ +||.+||++|++.+|+|+++|+|+|+|+.|+| +.+|++|||++|++|+|..+
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence 468999998 588999999995 99999999999999999999999999999998 56899999999999999875
Q ss_pred c
Q 012736 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
.
T Consensus 85 ~ 85 (92)
T 1wxv_A 85 K 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 145
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.47 E-value=1.4e-13 Score=108.08 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=63.5
Q ss_pred CceeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc--Ce---ec-CCCCcccccCCCCCCEEEEE
Q 012736 379 GGMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~--g~---~L-~d~~tL~~~~i~~~~~i~l~ 450 (457)
..+.|+|+...+ +.+++++++++||++||++|+.++||||++|+|+|. |+ .| +|+.+|++|||++|++|+|+
T Consensus 14 ~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 14 DFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp CEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred CeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 446778876655 489999999999999999999999999999999997 45 55 89999999999999999986
No 146
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=9.7e-14 Score=131.48 Aligned_cols=77 Identities=94% Similarity=1.277 Sum_probs=72.4
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 454 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~ 454 (457)
...|+|+|+..+|+++.++|++++||++||++|++.+|+|+++|+|+|+|+.|+|+.+|++|||++|++|+|++|+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999986
No 147
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.47 E-value=8.8e-14 Score=109.29 Aligned_cols=70 Identities=14% Similarity=0.181 Sum_probs=63.0
Q ss_pred eEEEEcCCC--cEEEEEecccccHHHHHHHHhhhhCCCCccceEeec--cE---Ec-cCCCcccccccccccceeEEE
Q 012736 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GK---QL-EDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~--g~---~L-~~~~tl~~y~i~~~sti~l~~ 71 (457)
.|+|+..++ ++++++|.+++||.+||+||++++|+|+++|+|+|. |+ +| +|+++|++|+|.+++++|++-
T Consensus 17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence 578887766 489999999999999999999999999999999998 45 45 899999999999999999863
No 148
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=4.5e-14 Score=109.54 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=64.6
Q ss_pred ceeeEEEcCCCCEE--EE-EecCCccHHHHHHHHhh-hcCCCCCCeEEEEc--CeecCCCCcccccCCCCCCEEEE
Q 012736 380 GMQIFVKTLTGKTI--TL-EVESSDTIDNVKAKIQD-KEGIPPDQQRLIFA--GKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 380 ~~~i~v~~~~g~~~--~l-~v~~~~tV~~lK~~i~~-~~gip~~~q~l~~~--g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
.|+|+|++..|+.+ .+ +|+|++||++||++|++ +.|+||++|+|+|. |+.|+|+.||++|||++|++|++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 58999999988765 58 99999999999999999 58999999999987 99999999999999999999876
No 149
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.47 E-value=6e-14 Score=113.42 Aligned_cols=73 Identities=29% Similarity=0.407 Sum_probs=68.3
Q ss_pred CeEEEEcCCC---cEEEEEe--------cc-cccHHHHHHHHhhhh--CCCCcc-ceEeeccEEccCCCccccccccccc
Q 012736 1 MQIFVKTLTG---KTITLEV--------ES-SDTIDNVKAKIQDKE--GIPPDQ-QRLIFAGKQLEDGRTLADYNIQKES 65 (457)
Q Consensus 1 ~~i~~~~~~g---~~~~~~v--------~~-~dtv~~ik~ki~~~~--~ip~~~-q~l~~~g~~L~~~~tl~~y~i~~~s 65 (457)
|+|+|++.+| +++++++ .+ ++||.+||++|+++. |+|++. |+|+|.|+.|+|+++|++|+|.+++
T Consensus 13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~ 92 (107)
T 1x1m_A 13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGS 92 (107)
T ss_dssp CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTC
T ss_pred eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCC
Confidence 7899999999 8999995 45 499999999999999 999999 9999999999999999999999999
Q ss_pred ceeEEEEe
Q 012736 66 TLHLVLRL 73 (457)
Q Consensus 66 ti~l~~~~ 73 (457)
++|++.+.
T Consensus 93 ~i~lv~~~ 100 (107)
T 1x1m_A 93 TVHVLRKS 100 (107)
T ss_dssp EEEEEESS
T ss_pred EEEEEeCC
Confidence 99998864
No 150
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=110.48 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=71.6
Q ss_pred cEEEEEE-ccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEeeccee
Q 012736 76 GMQIFVK-TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 154 (457)
Q Consensus 76 ~~~i~vk-~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~~~~ 154 (457)
.+.|.|+ .++++.+.++++++.||.+||++++...++|+++|+|+|+||.|.|+.||++|||++|.+|||+.+......
T Consensus 15 ~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 15 LATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNPDL 94 (118)
T ss_dssp CEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCTTT
T ss_pred cEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCCcc
Confidence 4667776 667889999999999999999999999999999999999999999999999999999999999998755433
No 151
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.45 E-value=1.4e-13 Score=106.02 Aligned_cols=65 Identities=18% Similarity=0.286 Sum_probs=59.5
Q ss_pred CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-------~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
...+.++..+++++||++||++|+.++|+||++|+|+| .|+.|+|+++|++|||++|++|||+-+
T Consensus 12 ~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 12 SRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp CSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred CCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 44567789999999999999999999999999999997 488999999999999999999999753
No 152
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.45 E-value=9e-14 Score=107.18 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=62.2
Q ss_pred EEEEc--CCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee-------ccEEccCCCcccccccccccceeEEEE
Q 012736 3 IFVKT--LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 3 i~~~~--~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~-------~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|.|.. ..++.+...+++++||.+||+||+.++|+|+++|+|+| .|+.|+|+++|.+|+|.+++++|++-.
T Consensus 5 v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~ 83 (86)
T 4b6w_A 5 VSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDL 83 (86)
T ss_dssp EEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEEC
T ss_pred EEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeC
Confidence 44443 44567789999999999999999999999999999996 589999999999999999999999864
No 153
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=7.9e-14 Score=110.10 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=65.6
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|+|+|+ ..|+++.++|++++||.+||++|++.+|+|+++|+|+|.|+.|+ +.+|++|||++|++|+|+..
T Consensus 16 ~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ld-d~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 16 ELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPE-DKTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp CCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCS-SSBHHHHCCCTTEEEEECCS
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCC-cCcHHHCCCCCCCEEEEEec
Confidence 35788998 46889999999999999999999999999999999999999994 55999999999999998754
No 154
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.43 E-value=4.8e-13 Score=104.79 Aligned_cols=79 Identities=16% Similarity=0.384 Sum_probs=73.3
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...|+|.|++.+|+.+.++|.+++++..|+..++++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999999998
No 155
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.42 E-value=2.3e-13 Score=128.96 Aligned_cols=74 Identities=96% Similarity=1.299 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEec
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 74 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~ 74 (457)
|+|+|++++|++++++|.+++||.+||++|+++.|+|+++|+|+|+|+.|+|+.+|++|+|.+++++||+++++
T Consensus 234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRLr 307 (307)
T 3ai5_A 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307 (307)
T ss_dssp EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC---
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999998753
No 156
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.41 E-value=3.4e-13 Score=106.00 Aligned_cols=72 Identities=24% Similarity=0.433 Sum_probs=66.8
Q ss_pred CeEEEEcCCCcEEEEEeccc-----ccHHHHHHHHhhhhCCCCccceEeeccEEccC-CCcccccccccccceeEEEEe
Q 012736 1 MQIFVKTLTGKTITLEVESS-----DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED-GRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~-----dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~-~~tl~~y~i~~~sti~l~~~~ 73 (457)
|+|+|++ .|++++++|.++ +||.+||++|+++.|+|+++|+|+|.|+.|.| +.+|++|+|.+++++|++.+.
T Consensus 8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6899999 589999999995 99999999999999999999999999999988 568999999999999998754
No 157
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.41 E-value=4.4e-13 Score=105.56 Aligned_cols=72 Identities=15% Similarity=0.207 Sum_probs=62.1
Q ss_pred ceeeEEEcCCC--CEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCe---e----cCCCCcccccCCCCCCEEEEE
Q 012736 380 GMQIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 380 ~~~i~v~~~~g--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~---~----L~d~~tL~~~~i~~~~~i~l~ 450 (457)
.+.++|..... +.+++++++++||++||++|+.++||||++|+|+|.|+ . ++|+.+|++|||++|++|+|+
T Consensus 14 ~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlv 93 (97)
T 2kj6_A 14 SVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHII 93 (97)
T ss_dssp CEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEE
T ss_pred eEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEE
Confidence 45667765433 47899999999999999999999999999999999883 3 489999999999999999986
Q ss_pred E
Q 012736 451 L 451 (457)
Q Consensus 451 ~ 451 (457)
-
T Consensus 94 d 94 (97)
T 2kj6_A 94 D 94 (97)
T ss_dssp E
T ss_pred e
Confidence 3
No 158
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.40 E-value=3.2e-13 Score=131.75 Aligned_cols=78 Identities=31% Similarity=0.572 Sum_probs=74.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhh---hcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEE-EEEEecC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLR 454 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~---~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i-~l~~r~~ 454 (457)
..|+|+|++.+|+++.++|++++||.+||.+|++ ++|+|+++|+|+|+|+.|+|+++|++|||++|++| +++.|.+
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCC
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCC
Confidence 5799999999999999999999999999999999 67899999999999999999999999999999998 8999988
Q ss_pred CC
Q 012736 455 GG 456 (457)
Q Consensus 455 GG 456 (457)
||
T Consensus 86 ~~ 87 (368)
T 1oqy_A 86 AG 87 (368)
T ss_dssp SS
T ss_pred CC
Confidence 86
No 159
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.39 E-value=1.9e-13 Score=107.92 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=64.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
|+|+|+ .+|+++.++|.+++||.+||++|+++.|+|+++|+|+|.|+.|+| .+|++|+|.+++++||+..
T Consensus 18 ~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~~g~~i~lv~~ 87 (95)
T 1v86_A 18 VDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVTSGAKIMVVGS 87 (95)
T ss_dssp EEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCCTTEEEEECCS
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCCCCCEEEEEec
Confidence 678898 579999999999999999999999999999999999999999954 5999999999999999754
No 160
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.39 E-value=7.2e-13 Score=105.54 Aligned_cols=79 Identities=15% Similarity=0.340 Sum_probs=76.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
..|+|.|++.+|+.+.++|.+++++..|+..++++.|+|++.++|+|+|+.|.++.|+++|++++|++|+++.+++||.
T Consensus 23 ~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG~ 101 (104)
T 1wz0_A 23 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSGP 101 (104)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCCS
T ss_pred CeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999994
No 161
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.38 E-value=4.4e-13 Score=105.57 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred eEEEEcCCC--cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccE---E----ccCCCcccccccccccceeEEE
Q 012736 2 QIFVKTLTG--KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK---Q----LEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g--~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~---~----L~~~~tl~~y~i~~~sti~l~~ 71 (457)
.++|...+. ++++++|++++||.+||+||++++|+|+++|+|+|+|+ . ++|+++|.+|+|.++++||++-
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEe
Confidence 467776544 58999999999999999999999999999999999983 3 4889999999999999999975
No 162
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.38 E-value=7.6e-13 Score=103.71 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|+++|+|+|+|++|.++.|+++|+++++++||++++.+++
T Consensus 8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG 83 (94)
T 2io1_B 8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 83 (94)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEES
T ss_pred EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999987765
No 163
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.37 E-value=1.4e-12 Score=103.77 Aligned_cols=77 Identities=13% Similarity=0.320 Sum_probs=71.9
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|.|++ +|+...++|.+++++..|+...+++.|+++++++|+|+|+.|.++.|.++|++++|++|++.++++||
T Consensus 30 ~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 30 THINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp SEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred CeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 458899999 99999999999999999999999999999999999999999999999999999999999999999998
No 164
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.36 E-value=6.4e-13 Score=129.64 Aligned_cols=75 Identities=31% Similarity=0.561 Sum_probs=70.4
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhh---hhCCCCccceEeeccEEccCCCcccccccccccce-eEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQD---KEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL-HLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~---~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti-~l~~~~~~ 75 (457)
|+|+|++++|++++++|.+++||.+||++|++ +.|+|+++|+|+|.|+.|+|+++|.+|+|.++++| |++.+.++
T Consensus 8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~ 86 (368)
T 1oqy_A 8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKA 86 (368)
T ss_dssp CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCS
T ss_pred EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCC
Confidence 89999999999999999999999999999999 67899999999999999999999999999999998 77766554
No 165
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.35 E-value=1.6e-12 Score=102.60 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=61.8
Q ss_pred eeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC---ee----cCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~~----L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+.|+|+..... .++++|++++||++||++|+.++|+|+++|+|+|.| +. ++|+.+|++|||++|++|+|.-
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 56777765442 689999999999999999999999999999999986 43 4899999999999999999864
No 166
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.35 E-value=7.2e-13 Score=106.94 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=65.8
Q ss_pred ceeeEEEcCCCCEEEEEec-CCccHHHHHHHHhhhcCCCCCCeEEEEcCe-----------e----cCCCCcccccCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQK 443 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~-~~~tV~~lK~~i~~~~gip~~~q~l~~~g~-----------~----L~d~~tL~~~~i~~ 443 (457)
.|.|+|++.+|+. .++|+ +++||.+||++|++++|+|+++|+|+|.|+ . ++|+.+|++|||++
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~ 85 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAH 85 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCT
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCC
Confidence 4899999999964 79999 999999999999999999999999999988 4 57889999999999
Q ss_pred CCEEEEEEe
Q 012736 444 ESTLHLVLR 452 (457)
Q Consensus 444 ~~~i~l~~r 452 (457)
|++|+|...
T Consensus 86 G~~L~l~~~ 94 (107)
T 1wf9_A 86 GSMVYLAYE 94 (107)
T ss_dssp TCEEECCCS
T ss_pred CCEEEEEeC
Confidence 999998754
No 167
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.33 E-value=9e-13 Score=106.36 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=65.8
Q ss_pred CeEEEEcCCCcEEEEEec-ccccHHHHHHHHhhhhCCCCccceEeeccE-----------E----ccCCCcccccccccc
Q 012736 1 MQIFVKTLTGKTITLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-----------Q----LEDGRTLADYNIQKE 64 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~-~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~-----------~----L~~~~tl~~y~i~~~ 64 (457)
|+|+|++.+|+. .++|+ +++||.+||++|+++.|+|+++|+|+|+|+ . ++|+++|++|+|.++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G 86 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG 86 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence 789999999976 79999 999999999999999999999999999988 4 588999999999999
Q ss_pred cceeEEEE
Q 012736 65 STLHLVLR 72 (457)
Q Consensus 65 sti~l~~~ 72 (457)
+++||+..
T Consensus 87 ~~L~l~~~ 94 (107)
T 1wf9_A 87 SMVYLAYE 94 (107)
T ss_dssp CEEECCCS
T ss_pred CEEEEEeC
Confidence 99998754
No 168
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.33 E-value=1.4e-12 Score=104.70 Aligned_cols=79 Identities=15% Similarity=0.388 Sum_probs=76.3
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+..|+|.|++.+|+.+.++|.+++++..|+...+++.|+|+++++|+|+|+.|.++.|+++|++++|++|++.++++||
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg 102 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGG 102 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCc
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999999
No 169
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.29 E-value=1.1e-11 Score=92.24 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=67.9
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
|+|.|++.+|+...++|.+++++..|+.+.+++.|+|+++++++|+|+.|.++.|+++|++++|++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6889999999999999999999999999999999999999999999999999999999999999999986
No 170
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.28 E-value=4.7e-12 Score=99.89 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=61.4
Q ss_pred eEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeecc---EE----ccCCCcccccccccccceeEEE
Q 012736 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---KQ----LEDGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g---~~----L~~~~tl~~y~i~~~sti~l~~ 71 (457)
.|+|+..++. .++++|.+++||.+||++|++++|+|+++|+|+|.| +. ++|+++|.+|+|.+++++|++-
T Consensus 9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBC
T ss_pred EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEE
Confidence 4567765443 799999999999999999999999999999999987 43 5899999999999999999865
No 171
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.1e-11 Score=96.33 Aligned_cols=76 Identities=17% Similarity=0.403 Sum_probs=72.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++++...++
T Consensus 6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg 81 (91)
T 2io0_B 6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 81 (91)
T ss_dssp EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCC
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999887654
No 172
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.26 E-value=1.2e-11 Score=102.08 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=62.8
Q ss_pred ceeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC---e---ec-CCCCcccccCCCCCCEEEEEE
Q 012736 380 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---QL-EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g---~---~L-~d~~tL~~~~i~~~~~i~l~~ 451 (457)
.+.|+|+...+. .+++++++++||++||.+|+..+||||++|+|+|.| + .| +|+.+|++|||++|++|||+-
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEe
Confidence 467777765442 689999999999999999999999999999999987 4 34 788999999999999999875
No 173
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.24 E-value=8.3e-12 Score=96.57 Aligned_cols=71 Identities=24% Similarity=0.343 Sum_probs=63.4
Q ss_pred eeeEEEcCCCCEEEEE-ecCCccHHHHHHHHhhhcCCCCCCeEEEEc--CeecC---CCCcccccCCCCCCEEEEEEe
Q 012736 381 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~-v~~~~tV~~lK~~i~~~~gip~~~q~l~~~--g~~L~---d~~tL~~~~i~~~~~i~l~~r 452 (457)
|+|+|++.+|+ +.++ +++++||++||..|++++|+|++.|+|+|+ ++.|+ |+.+|++|||.+|++|+|.-.
T Consensus 1 m~i~vr~~~G~-~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGT-HLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEE-EEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred CEEEEEcCCCC-EEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 78999999996 4577 999999999999999999999999999997 47874 678999999999999998643
No 174
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.23 E-value=4.2e-11 Score=90.75 Aligned_cols=73 Identities=10% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCceeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736 378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+..|+|.|++.+|+ .+.++|.+++++..|+...+++.|+++++++|+|+|+.|.++.|+++|++++|++|++.
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35689999999996 89999999999999999999999999999999999999999999999999999999985
No 175
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.22 E-value=2.3e-11 Score=90.59 Aligned_cols=70 Identities=16% Similarity=0.384 Sum_probs=68.0
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|++|.++.|+++|++.++++|++.
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999985
No 176
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.22 E-value=1.9e-11 Score=100.99 Aligned_cols=71 Identities=14% Similarity=0.252 Sum_probs=62.8
Q ss_pred eEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeecc---E---E-ccCCCcccccccccccceeEEEE
Q 012736 2 QIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG---K---Q-LEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g---~---~-L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
.|+|+..++. .+++++.+++||.+||.+|+++.|+|+++|+|+|.| + + ++|+++|.+|+|.++++||++..
T Consensus 8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~ 86 (122)
T 1t0y_A 8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV 86 (122)
T ss_dssp EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence 5677776553 789999999999999999999999999999999987 3 3 47899999999999999999873
No 177
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.20 E-value=3.7e-11 Score=94.01 Aligned_cols=75 Identities=16% Similarity=0.379 Sum_probs=70.7
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|++.++|+|+|++|.++.|+++|++.++++|+++++..+
T Consensus 18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~G 92 (93)
T 2d07_B 18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTG 92 (93)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999987665
No 178
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.16 E-value=2.7e-11 Score=93.63 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=63.3
Q ss_pred CeEEEEcCCCcEEEEE-ecccccHHHHHHHHhhhhCCCCccceEeec--cEEcc---CCCcccccccccccceeEEE
Q 012736 1 MQIFVKTLTGKTITLE-VESSDTIDNVKAKIQDKEGIPPDQQRLIFA--GKQLE---DGRTLADYNIQKESTLHLVL 71 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~-v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~--g~~L~---~~~tl~~y~i~~~sti~l~~ 71 (457)
|+|+|++.+|+.. ++ +.+++||.+||++|+++.|+|+++|+|+|+ ++.|+ ++.+|++|+|.+++++|+.-
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~ 76 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEE 76 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEe
Confidence 8999999999754 77 999999999999999999999999999997 47774 67899999999999999854
No 179
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.15 E-value=4.7e-11 Score=95.02 Aligned_cols=76 Identities=16% Similarity=0.376 Sum_probs=72.3
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCc
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~ 76 (457)
|+|.|++.+|+.+.+.|.+++++..|+++++++.|+|++.++|+|+|++|.++.|+++|++.++++||++++..++
T Consensus 25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999998876653
No 180
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.14 E-value=1.2e-10 Score=88.17 Aligned_cols=70 Identities=10% Similarity=0.274 Sum_probs=67.3
Q ss_pred CeEEEEcCCCc-EEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~-~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|+|.|++.+|+ .+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++.
T Consensus 8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 68999999996 99999999999999999999999999999999999999999999999999999999874
No 181
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.13 E-value=4.2e-11 Score=96.07 Aligned_cols=77 Identities=16% Similarity=0.428 Sum_probs=73.3
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecCcE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 77 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~~~ 77 (457)
|+|.|++.+|+.+.+.|.+++++..|+++.+++.|+|+++++|+|+|++|.++.|+++|++.++++|++++...+++
T Consensus 27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~ 103 (110)
T 2k8h_A 27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGL 103 (110)
T ss_dssp EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC-
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999887764
No 182
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.13 E-value=1.1e-10 Score=92.98 Aligned_cols=74 Identities=12% Similarity=0.314 Sum_probs=69.8
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEEEEecC
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~~~~~~ 75 (457)
|+|.|++ +|+.+.+.|.+++++..|+++.+++.|+|++.++|+|+|++|.++.|.++|++.++++|+++++..+
T Consensus 32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~G 105 (106)
T 2eke_C 32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIG 105 (106)
T ss_dssp EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC--
T ss_pred EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeeccc
Confidence 6899999 9999999999999999999999999999999999999999999999999999999999999987665
No 183
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.12 E-value=6.8e-11 Score=113.73 Aligned_cols=71 Identities=23% Similarity=0.470 Sum_probs=65.3
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE---ecCeeccCCCcccccccccCceEEEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~---~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
++|+|+ |+|+++++++++++||++||++|++++||||++|+|+ ++|+.|+|+.+|++|+|++|++++|+-+
T Consensus 6 i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs 79 (320)
T 3shq_A 6 VVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGS 79 (320)
T ss_dssp EEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECC
T ss_pred EEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEcc
Confidence 578888 8999999999999999999999999999999999999 8899999999999999999999999843
No 184
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.07 E-value=1.3e-10 Score=111.83 Aligned_cols=77 Identities=21% Similarity=0.424 Sum_probs=67.8
Q ss_pred CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE---ecCccccccCcccccccccCCcceeEEEeec
Q 012736 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQLEDGRTLADYNIQKESTLHLVLRLRG 151 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~~ 151 (457)
..|.|+|+ .+|+.+.++|++++||++||++|++++|+||++|+|+ |+|+.|+|+.+|++|+|++|++|+|+..+..
T Consensus 4 ~~i~i~Vk-~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 4 KEVVVIVK-WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp CEEEEEEE-ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred ceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 35788898 5899999999999999999999999999999999999 8999999999999999999999999876554
Q ss_pred c
Q 012736 152 G 152 (457)
Q Consensus 152 ~ 152 (457)
.
T Consensus 83 ~ 83 (320)
T 3shq_A 83 D 83 (320)
T ss_dssp -
T ss_pred h
Confidence 3
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=7e-10 Score=87.72 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=61.6
Q ss_pred ceeeEEEc---CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC-------eec-CCCCcccccCCCCCCEEE
Q 012736 380 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG-------KQL-EDGRTLADYNIQKESTLH 448 (457)
Q Consensus 380 ~~~i~v~~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g-------~~L-~d~~tL~~~~i~~~~~i~ 448 (457)
.+.|+|++ .+|+.+...+++++||++||.+|+..+|+|+..|+|.|.+ ..| +|+.+|++|||.+|++|+
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35566664 4677899999999999999999999999999999999873 235 577799999999999999
Q ss_pred EEE
Q 012736 449 LVL 451 (457)
Q Consensus 449 l~~ 451 (457)
|.-
T Consensus 89 V~d 91 (97)
T 1wjn_A 89 VRW 91 (97)
T ss_dssp EEC
T ss_pred EEe
Confidence 875
No 186
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=99.02 E-value=1.6e-09 Score=86.90 Aligned_cols=77 Identities=17% Similarity=0.385 Sum_probs=73.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 455 (457)
..++|.|++.+|+...++|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++|++|++..+..|
T Consensus 39 ~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q~G 115 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQCG 115 (115)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCCC
T ss_pred CeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeeccC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999998876
No 187
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.94 E-value=1.3e-06 Score=89.76 Aligned_cols=345 Identities=12% Similarity=0.186 Sum_probs=222.9
Q ss_pred EEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEec-Ccc-------c-c----ccCcccccccccCCcceeEEEe------
Q 012736 89 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQ-------L-E----DGRTLADYNIQKESTLHLVLRL------ 149 (457)
Q Consensus 89 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~-g~~-------L-~----d~~tl~~y~i~~~s~i~l~~~~------ 149 (457)
..+.|..+.|+.+||+++++..|+|+++|||..- .+. + + .+.++.++. ..++.+.+-+..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~~~ 116 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPELA 116 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHHHH
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccccC
Confidence 4678999999999999999999999999998622 111 1 1 122333321 123333333321
Q ss_pred -----------ecceeeeEeecc--CceEE----eeecCCchHHHHHHHHhhhhCCCCCceEEEEC------CeecC-CC
Q 012736 150 -----------RGGMQIFVKTLT--GKTIT----LEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA------GKQLE-DG 205 (457)
Q Consensus 150 -----------~~~~~i~v~~~~--g~~~~----~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~------g~~L~-d~ 205 (457)
...+.|++|..+ .+++. +.|+..++|.++-..|.+..|+|++.-..+|. -..|+ .+
T Consensus 117 ~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~ 196 (530)
T 2ylm_A 117 ASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYD 196 (530)
T ss_dssp TTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSS
T ss_pred CccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccccc
Confidence 113678888765 33443 56889999999999999999999987666654 24566 57
Q ss_pred CCcccc--CcCcCcEEEEEEEec-C-----------------CeeEEEEc---cCCceEEEEeecCccHHHHHHHHhhhc
Q 012736 206 RTLADY--NIQKESTLHLVLRLR-G-----------------GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKE 262 (457)
Q Consensus 206 ~tL~~y--~i~~~~~i~l~~~~~-~-----------------~~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~I~~~~ 262 (457)
.|+.+. .+.+|+.|.+-.... . .+.|.++. .+...+.++++...|-.+|.+.+.++.
T Consensus 197 ~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~~l 276 (530)
T 2ylm_A 197 VSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQRL 276 (530)
T ss_dssp SBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHHHH
T ss_pred ccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHHHh
Confidence 899999 999999986554432 1 12333332 346679999999999999999999999
Q ss_pred CCCCCCeEEEeC----Ccc-----cCCCcccccccc----CCCCeEEEEEee---------cCceeeEEEecCC--cEEE
Q 012736 263 GIPPDQQRLIFA----GKQ-----LEDGRTLADYNI----QKESTLHLVLRL---------RGGMQIFVKTLTG--KTIT 318 (457)
Q Consensus 263 ~ip~~~q~L~~~----g~~-----L~d~~tl~~~~i----~~~~tl~l~~~~---------~~~~~i~i~~~~g--~~~~ 318 (457)
+++|..-||.-. |.. ...+.+|.+.=- ...+.+++.. + ...+.|+....+. +.+.
T Consensus 277 ~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Yev-L~ipl~ElE~~r~~kv~w~~~~~~~~~~~ 355 (530)
T 2ylm_A 277 NTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQQ-LKMKITDFENRRSFKCIWLNSQFREEEIT 355 (530)
T ss_dssp TSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEEE-CSSCHHHHHSBCCEEEEEECTTSCEEEEE
T ss_pred CCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEEE-CCCCHHHHhhCceEEEEEECCCCceEEEE
Confidence 999998887622 221 222345433211 1124454432 2 2223443332221 3677
Q ss_pred EEeeCCCcHHHHHHHhhcccCCCC---CCceEE--ecCe---eccCCCcccccccccCceEEEEEEec--------Ccee
Q 012736 319 LEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRLR--------GGMQ 382 (457)
Q Consensus 319 l~v~~~~Tv~~lK~~I~~~~~ip~---~~q~l~--~~g~---~L~d~~~l~~~~i~~~~~l~l~~~~~--------~~~~ 382 (457)
+.++.+.||.||-+.++.+.+++. .+-++. ++++ +++++..++.++=....++++..-.. ..+-
T Consensus 356 l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~~l 435 (530)
T 2ylm_A 356 LYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENEML 435 (530)
T ss_dssp ECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTEEE
T ss_pred EEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCcEE
Confidence 889999999999999999999974 334443 5554 46777777765432244444432111 1122
Q ss_pred eEEEc-------CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCe---E--EEEcC--eecCCCCc
Q 012736 383 IFVKT-------LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ---R--LIFAG--KQLEDGRT 435 (457)
Q Consensus 383 i~v~~-------~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q---~--l~~~g--~~L~d~~t 435 (457)
|.|-. .-|..+.+.|.++.|+.++|++|.+++|++...+ + ++-.+ ..++|+..
T Consensus 436 i~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~keF~K~Kfa~v~~~~~~yl~d~d~ 502 (530)
T 2ylm_A 436 VTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEKEFEKFKFAIVMMGRHQYINEDEY 502 (530)
T ss_dssp EEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHHHHTTCEEEEEETTEEEECCTTTC
T ss_pred EEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHhhhhhEEEEEEECCcccccCCccc
Confidence 33321 1266889999999999999999999999996533 3 33334 45777543
No 188
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=3e-09 Score=94.15 Aligned_cols=78 Identities=13% Similarity=0.276 Sum_probs=73.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
.-++|.|+ .+|+...++|.+++++..|+...+++.|+|++++|++|+|++|.++.|.+++++++|++|++..+++||.
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~ 105 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGG 105 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCc
Confidence 34778887 4889999999999999999999999999999999999999999999999999999999999999999994
No 189
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.91 E-value=2.1e-09 Score=92.68 Aligned_cols=78 Identities=12% Similarity=0.287 Sum_probs=73.5
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
..++|.|+ .+|....++|.+++++..|+...+++.|++++.++++|+|+.|.++.|.+++++++||+|++..+++||.
T Consensus 56 e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 56 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp CEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred CcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 44778887 4889999999999999999999999999999999999999999999999999999999999999999993
No 190
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.79 E-value=6.5e-10 Score=97.16 Aligned_cols=79 Identities=13% Similarity=0.311 Sum_probs=1.5
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
+..|+|.| ..+|+...++|.+++++..|+...+++.|++++.+|+.|+|+.+.++.|.+++++++||+|++..+++||+
T Consensus 19 ~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~ 97 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGL 97 (227)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred CCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCc
Confidence 45688888 77899999999999999999999999999999999999999999999999999999999999999999995
No 191
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.78 E-value=1.5e-08 Score=80.03 Aligned_cols=73 Identities=16% Similarity=0.234 Sum_probs=61.7
Q ss_pred cEEEEEEc---cCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCc-------cc-cccCcccccccccCCcce
Q 012736 76 GMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-------QL-EDGRTLADYNIQKESTLH 144 (457)
Q Consensus 76 ~~~i~vk~---~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~-------~L-~d~~tl~~y~i~~~s~i~ 144 (457)
.+.|+|+. .+|+.+...++++.||++||.+|+..+|+|+..|+|.|.+. .| +|.++|+.|++.+|++||
T Consensus 9 ~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~ 88 (97)
T 1wjn_A 9 LLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLL 88 (97)
T ss_dssp EEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEE
T ss_pred cEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEE
Confidence 35566654 46778899999999999999999999999999999998731 24 678999999999999999
Q ss_pred eEEE
Q 012736 145 LVLR 148 (457)
Q Consensus 145 l~~~ 148 (457)
+...
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9763
No 192
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=98.70 E-value=1.6e-05 Score=81.85 Aligned_cols=331 Identities=13% Similarity=0.175 Sum_probs=214.4
Q ss_pred cEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEE--------ccC-----CCcccccccccccceeEEEEe----
Q 012736 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ--------LED-----GRTLADYNIQKESTLHLVLRL---- 73 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~--------L~~-----~~tl~~y~i~~~sti~l~~~~---- 73 (457)
...++.|....|+.++|+.|.+..|+|+++|||+.-... +.+ +.++.++. ...+.+++.+..
T Consensus 36 ~~~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~~~~RqN~T~Rp~~~~~~~~~~~~~~~~~-~~~~~~~lflE~~~~~ 114 (530)
T 2ylm_A 36 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRPAMLDNEADGNKTMIELS-DNENPWTIFLETVDPE 114 (530)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEEEEECTTSCEEECCCCHHHHTTSBHHHHH-TSCSSEEEEEEECCHH
T ss_pred CcceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEEEEcCCCCccCCccCCccccHHHHHHHHh-ccCCceEEEEEecccc
Confidence 445789999999999999999999999999999863221 111 11222221 122234444321
Q ss_pred -------------cCcEEEEEEccC--CcEE----EEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecC------cccc-
Q 012736 74 -------------RGGMQIFVKTLT--GKTI----TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG------KQLE- 127 (457)
Q Consensus 74 -------------~~~~~i~vk~~~--g~~~----~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g------~~L~- 127 (457)
...+-|++|..+ .+.+ .+.|+.+++|.++-..|.++.|+|++.-..+|.- ..|+
T Consensus 115 ~~~~~~~l~~~~~~~~iLlFlK~yDp~~q~L~~~G~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~ 194 (530)
T 2ylm_A 115 LAASGATLPKFDKDHDVMLFLKMYDPKTRSLNYCGHIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQD 194 (530)
T ss_dssp HHTTTCCCCCCCTTTEEEEEEEEEETTTTEEEEEEEEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCC
T ss_pred cCCccccCCCCCCCCcEEEEEEeeCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEccc
Confidence 124778888654 2332 3678999999999999999999999887776652 3466
Q ss_pred ccCccccc--ccccCCcceeEEEee------------------cceeeeEee---ccCceEEeeecCCchHHHHHHHHhh
Q 012736 128 DGRTLADY--NIQKESTLHLVLRLR------------------GGMQIFVKT---LTGKTITLEVESSDTIDNVKAKIQD 184 (457)
Q Consensus 128 d~~tl~~y--~i~~~s~i~l~~~~~------------------~~~~i~v~~---~~g~~~~~~v~~~~tV~~lK~~i~~ 184 (457)
.+.|+.+. ++.+|+.|..-.... ..+.|.++. .+...+.++++...|-.++-++|.+
T Consensus 195 ~~~t~~~~~~eL~~GdII~fQ~~~~~~~~~~y~~v~~yy~~l~nrv~V~f~~~~~~~~~~F~l~Ls~~~~Y~~la~~va~ 274 (530)
T 2ylm_A 195 YDVSLDKALDELMDGDIIVFQKDDPENDNSELPTAKEYFRDLYHRVDVIFCDKTIPNDPGFVVTLSNRMNYFQVAKTVAQ 274 (530)
T ss_dssp SSSBHHHHSTTCCTTEEEEEEECCGGGGGSSSCSHHHHHHHHHHEEEEEEEETTSTTCCCEEEEEETTCCHHHHHHHHHH
T ss_pred ccccHHHHHhcccCCCEEEEEecCCccccccCCCHHHHHHHHhcceEEEEeecCCCCCCCeEEEECCCCCHHHHHHHHHH
Confidence 57899999 999999887765432 123444443 2356799999999999999999999
Q ss_pred hhCCCCCceEEEEC----Ce---e--cCCCCCccccCc----CcCcEEEEEEEec---------CCeeEEEEccCC--ce
Q 012736 185 KEGIPPDQQRLIFA----GK---Q--LEDGRTLADYNI----QKESTLHLVLRLR---------GGMQIFVKTLTG--KT 240 (457)
Q Consensus 185 ~~gip~~~q~L~~~----g~---~--L~d~~tL~~y~i----~~~~~i~l~~~~~---------~~~~i~v~~~~g--~~ 240 (457)
..++.|+..||.-. |+ . ...+.+|.+.=. .....+..- .++ ..+.|+...... ..
T Consensus 275 ~l~~dP~~lRf~~~~~~~~~p~~~i~~~~~~~L~d~l~~~~~~~~~~l~Ye-vL~ipl~ElE~~r~~kv~w~~~~~~~~~ 353 (530)
T 2ylm_A 275 RLNTDPMLLQFFKSQGYRDGPGNPLRHNYEGTLRDLLQFFKPRQPKKLYYQ-QLKMKITDFENRRSFKCIWLNSQFREEE 353 (530)
T ss_dssp HHTSCGGGEEEECCCTTSCSCCSBCCTTCCSCHHHHSTTSCSSSCCEEEEE-ECSSCHHHHHSBCCEEEEEECTTSCEEE
T ss_pred HhCCCchhEEEEecccccCCCCCccccCCCCcHHHHhhcccCCCCCeEEEE-ECCCCHHHHhhCceEEEEEECCCCceEE
Confidence 99999988877521 21 1 122344433211 111223221 111 123343333222 26
Q ss_pred EEEEeecCccHHHHHHHHhhhcCCCC---CCeEEE--eCCc---ccCCCccccccccCCCCeEEEEEee--------cCc
Q 012736 241 ITLEVESSDTIDNVKAKIQDKEGIPP---DQQRLI--FAGK---QLEDGRTLADYNIQKESTLHLVLRL--------RGG 304 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~---~~q~L~--~~g~---~L~d~~tl~~~~i~~~~tl~l~~~~--------~~~ 304 (457)
+.+-+..+.||++|-+.+.++.+++. ...|+. ++++ .+.++.++...+=....++++.--. ...
T Consensus 354 ~~l~vpK~gtV~Dll~~l~k~~~~~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i~d~~~~~~rieeip~ee~~~~~~~~ 433 (530)
T 2ylm_A 354 ITLYPDKHGCVRDLLEECKKAVELGEKASGKLRLLEIVSYKIIGVHQEDELLECLSPATSRTFRIEEIPLDQVDIDKENE 433 (530)
T ss_dssp EEECCBTTCBHHHHHHHHHTTCCCCTTCCCCEEEEEEETTEEEEEECTTSBGGGSCCCTTCEEEEEECCGGGSSCCTTTE
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCCCcCCcccEEEEEEECCEEEEecCCCcccccccccccceEEEEECCHHHhccCCCCc
Confidence 66778899999999999999999873 445554 4554 3666777765432224444432211 111
Q ss_pred eeeEEEec-------CCcEEEEEeeCCCcHHHHHHHhhcccCCCCC
Q 012736 305 MQIFVKTL-------TGKTITLEVESSDTIDNVKAKIQDKEGIPPD 343 (457)
Q Consensus 305 ~~i~i~~~-------~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~ 343 (457)
+-|.|-.. -|..+.+.+.++.|+.++|++|++++||+..
T Consensus 434 ~li~V~hf~k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rlgv~~k 479 (530)
T 2ylm_A 434 MLVTVAHFHKEVFGTFGIPFLLRIHQGEHFREVMKRIQSLLDIQEK 479 (530)
T ss_dssp EEEEEEEESSSTTCEEEEEEEEEEETTCCHHHHHHHHHHHHCCCHH
T ss_pred EEEEEEEeccCcccccCCCeEEEecCCCcHHHHHHHHHHHhCCCHh
Confidence 22333222 3678889999999999999999999999975
No 193
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.67 E-value=9.9e-08 Score=76.53 Aligned_cols=73 Identities=16% Similarity=0.397 Sum_probs=68.5
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEe
Q 012736 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 300 (457)
Q Consensus 228 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~ 300 (457)
.+.|.|+..+|+.+.+.|.+++++..|+...+++.|+++.+++|+|.|+.+.++.|..++++.++++|+++..
T Consensus 40 ~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 40 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEEC
T ss_pred eEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEee
Confidence 3667788889999999999999999999999999999999999999999999999999999999999988764
No 194
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.61 E-value=3.1e-07 Score=66.72 Aligned_cols=69 Identities=16% Similarity=0.320 Sum_probs=61.5
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
+.++.....-+.+.|+++++|.+|.+.-+.+.|||++ ..+|.|+|..|.++.++++|++++|+.|.+.+
T Consensus 12 ~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 12 LLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 3444444445889999999999999999999999999 99999999999999999999999999999875
No 195
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.53 E-value=5.2e-08 Score=73.60 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=61.0
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCee---c--CCCCcccccCCCCCCEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~---L--~d~~tL~~~~i~~~~~i~l~ 450 (457)
.+|.|.+++.+| ++.+++++++|+.+|+.+|++.++++++.|.+.++..+ | .++.+|+++||+.|++|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 358899999988 67889999999999999999999999999888765544 3 47789999999999999874
No 196
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.49 E-value=7.1e-07 Score=78.92 Aligned_cols=99 Identities=11% Similarity=0.255 Sum_probs=79.9
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc--
Q 012736 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG-- 304 (457)
Q Consensus 227 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~-- 304 (457)
.-+.+.|+ .+|+.+.+.+++.+++..|+...+++.|+|++++||+|.|+.+.++.|..++++.+|++|+++..+.++
T Consensus 28 ~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg~k 106 (200)
T 3pge_A 28 THINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGGG 106 (200)
T ss_dssp CCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCCC-
T ss_pred CeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcCcC
Confidence 34667776 489999999999999999999999999999999999999999999999999999999999999887554
Q ss_pred --eeeEEEecCCcEEEEEeeCCCcH
Q 012736 305 --MQIFVKTLTGKTITLEVESSDTI 327 (457)
Q Consensus 305 --~~i~i~~~~g~~~~l~v~~~~Tv 327 (457)
+.+....-.| .-.+.+.++..+
T Consensus 107 d~v~Fs~~GD~G-~~~i~l~~~~~~ 130 (200)
T 3pge_A 107 ETIKFVADGDIG-SGSVIIKPFVDM 130 (200)
T ss_dssp CCEEEEEECSSC-EEEEEECCBCCS
T ss_pred ceEEEEeeccCC-eEEEEEecCCCC
Confidence 3444443333 334455554433
No 197
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.40 E-value=5.3e-07 Score=77.81 Aligned_cols=76 Identities=12% Similarity=0.291 Sum_probs=70.0
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCc
Q 012736 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 304 (457)
Q Consensus 228 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~ 304 (457)
.+.|.|+ .+|..+.+.|++++++..|+...+++.|+|+.+++|+|+|+.+.++.|..++++.++|+|+++..+.++
T Consensus 57 ~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG 132 (207)
T 3tix_A 57 HINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGG 132 (207)
T ss_dssp EEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTT
T ss_pred cEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 3566676 489999999999999999999999999999999999999999999999999999999999998877665
No 198
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=98.36 E-value=1.7e-06 Score=67.36 Aligned_cols=73 Identities=12% Similarity=0.273 Sum_probs=67.6
Q ss_pred cCceeeEEEcCCCC-EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEE
Q 012736 378 RGGMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 450 (457)
Q Consensus 378 ~~~~~i~v~~~~g~-~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~ 450 (457)
+..+.|.|+..+|+ ...+.|.+++++..|....+++.|++++..++.|+|..|.++.|.+++++++|++|.+.
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 35577888888885 78999999999999999999999999999999999999999999999999999999875
No 199
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.33 E-value=6.4e-08 Score=93.00 Aligned_cols=79 Identities=13% Similarity=0.320 Sum_probs=0.7
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
...++|.|++ +|+...++|.+++++..|+...+++.|++++.+++.|+|+.+.++.|.+++++++|++|++..+++|||
T Consensus 19 ~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~ 97 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGM 97 (360)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred CCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchH
Confidence 3456778876 677889999999999999999999999999999999999999999999999999999999999999996
No 200
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=98.27 E-value=2e-06 Score=77.59 Aligned_cols=79 Identities=13% Similarity=0.302 Sum_probs=73.6
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
...+.|.|++ +|+...+++.+++++..|+...+++.|+|+++++++|+|+.+.++.|..+++++++++|++...+.||.
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 4557788887 777889999999999999999999999999999999999999999999999999999999999999983
No 201
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.21 E-value=4e-06 Score=64.40 Aligned_cols=55 Identities=18% Similarity=0.227 Sum_probs=45.8
Q ss_pred cCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccC--CCccccccc
Q 012736 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLED--GRTLADYNI 61 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~--~~tl~~y~i 61 (457)
...+..+.+.|.+.+||..+|++|++++|||+.+|+|+|.|+.|.- ++.-..|.-
T Consensus 20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~ 76 (94)
T 4efo_A 20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPK 76 (94)
T ss_dssp TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCC
T ss_pred cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCC
Confidence 3567899999999999999999999999999999999999988653 333444433
No 202
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.14 E-value=2.9e-07 Score=80.60 Aligned_cols=82 Identities=12% Similarity=0.312 Sum_probs=1.2
Q ss_pred EEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEee
Q 012736 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 71 ~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
..+...|+|.| ..+|+.+.+.|.+++++..|++...++.|++++.++++|+|+.+.++.|.+++++.+|++|++.....
T Consensus 16 ~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~ 94 (227)
T 3v7o_A 16 VKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEeccc
Confidence 34456788888 77899999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cce
Q 012736 151 GGM 153 (457)
Q Consensus 151 ~~~ 153 (457)
||.
T Consensus 95 GG~ 97 (227)
T 3v7o_A 95 GGL 97 (227)
T ss_dssp -CC
T ss_pred CCc
Confidence 774
No 203
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.10 E-value=2.1e-05 Score=57.14 Aligned_cols=71 Identities=15% Similarity=0.323 Sum_probs=63.9
Q ss_pred eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCC-ceEEEECCeecCCCCCccccCcCcCcEEEEEE
Q 012736 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 223 (457)
+.+.++......+.+.+.++.+|.+|-+.-+.+.|||++ ..+|.|.|..|+.+.++++|.+.+++.|.+++
T Consensus 10 ~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 10 ITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp EEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 345566666778999999999999999999999999999 89999999999999999999999999998764
No 204
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.09 E-value=2e-06 Score=64.79 Aligned_cols=71 Identities=14% Similarity=0.221 Sum_probs=58.9
Q ss_pred CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCcc---c--cccCcccccccccCCcceeE
Q 012736 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ---L--EDGRTLADYNIQKESTLHLV 146 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~---L--~d~~tl~~y~i~~~s~i~l~ 146 (457)
+.|.|.|++.+| .+.+++++++|+.+|+++|++..+++++.|.+.++... | .++.+++++|+++|+.|++.
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 347788888887 66788999999999999999999999999888755433 3 47889999999999998874
No 205
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=98.03 E-value=2.5e-05 Score=59.63 Aligned_cols=72 Identities=14% Similarity=0.276 Sum_probs=66.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
..++|.|+. .|....+.+..++....|....+++.|++++..++.|+|..+.++.|.+++|+++|++|.+..
T Consensus 20 ~~IniKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 20 RLFPLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp CCEEEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred CeEEEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 346778885 688899999999999999999999999999999999999999999999999999999998764
No 206
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.00 E-value=1.7e-05 Score=60.96 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=48.4
Q ss_pred CCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecC--CCCcccccCC-CCCCEEEEEE
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE--DGRTLADYNI-QKESTLHLVL 451 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~--d~~tL~~~~i-~~~~~i~l~~ 451 (457)
..++.+.+.+.+.+||..+|++|++.+|||+++|+|+|.|+.|. ++..-..|-- ...+-|.|..
T Consensus 21 ~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s 87 (94)
T 4efo_A 21 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS 87 (94)
T ss_dssp TTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEE
T ss_pred ccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEe
Confidence 45778999999999999999999999999999999999998775 3333333322 2234444443
No 207
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.95 E-value=2.3e-05 Score=59.29 Aligned_cols=75 Identities=20% Similarity=0.239 Sum_probs=69.1
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEee
Q 012736 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 301 (457)
Q Consensus 227 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~ 301 (457)
++|.|.|-..+|+..++.|.++.++.++-++.++++|++++++.|.|+++.++-+.+++.-|+.+++.|.|+...
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s 82 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVS 82 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEcc
Confidence 467888888999999999999999999999999999999999999999999999999999999999999887654
No 208
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.92 E-value=0.00049 Score=67.67 Aligned_cols=134 Identities=24% Similarity=0.353 Sum_probs=104.5
Q ss_pred CceEEeeecCCchHHHHHHHHhhhhC----CCCCceEEEE------CCeecCCCCCccccCcCcCcEEEEEEEecCCeeE
Q 012736 162 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 231 (457)
Q Consensus 162 g~~~~~~v~~~~tV~~lK~~i~~~~g----ip~~~q~L~~------~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~~~~i 231 (457)
+.+-++.++++.||.++...|.++.. .+.++.-|.- .|+-|++++||..|++.+++.+....++ +.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~---~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQ---RPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECE---EEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCce---eEE
Confidence 55667899999999999999988764 3566777765 3677999999999999999988776543 578
Q ss_pred EEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeCC---------cccCCCccccccccCCCCeEEEE
Q 012736 232 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG---------KQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 232 ~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~g---------~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.|..++|....+.++++.|+.++-..|+++.|+.... .-|.+.. .-|+..+++...+.....++++.
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~fr 165 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLR 165 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEE
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEE
Confidence 8999999999999999999999999999999986544 4455532 12555677777666555566554
No 209
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.87 E-value=5.9e-05 Score=58.61 Aligned_cols=71 Identities=13% Similarity=0.287 Sum_probs=64.4
Q ss_pred CeeEEEEccCCc-eEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736 228 GMQIFVKTLTGK-TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 228 ~~~i~v~~~~g~-~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
.+.+.|+..+|. .+.+.|.+.+++..|....+++.|+++...+|+|.|+.+.++.|..+.++.++++|.+.
T Consensus 25 ~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 25 QLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred eEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 356667777884 89999999999999999999999999999999999999999999999999999998654
No 210
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.85 E-value=0.00076 Score=66.30 Aligned_cols=136 Identities=24% Similarity=0.343 Sum_probs=107.1
Q ss_pred CcEEEEEeeCCCcHHHHHHHhhcccC----CCCCCceEEe------cCeeccCCCcccccccccCceEEEEEEecCceee
Q 012736 314 GKTITLEVESSDTIDNVKAKIQDKEG----IPPDQQRLIF------AGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQI 383 (457)
Q Consensus 314 g~~~~l~v~~~~Tv~~lK~~I~~~~~----ip~~~q~l~~------~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i 383 (457)
+-+-++.+++++||.|.-..|.++.. .+++.--|.| +|.=|+++++|..|++.++..+.... ..+.+
T Consensus 12 ~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~---~~~~~ 88 (371)
T 3ivf_A 12 NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRK---KQRPL 88 (371)
T ss_dssp TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEE---CEEEE
T ss_pred ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccC---ceeEE
Confidence 56677999999999999999988864 3455556777 33448889999999999999888875 46788
Q ss_pred EEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEEcC---------eecCCCCcccccCCCCCCEEEEEEe
Q 012736 384 FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFAG---------KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 384 ~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~g---------~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.|..++|....+.|++++|+.++-..|+.+.|+... .+-|.+.. .-|+.++++.+.+.....++++..|
T Consensus 89 ~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~~~~~l~frvK 167 (371)
T 3ivf_A 89 KIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVEEHETLLLRRK 167 (371)
T ss_dssp EEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSBTGGGTCCTTCEEEEEEC
T ss_pred EEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCchhHhhCCCCCceEEEEEE
Confidence 999999999999999999999999999999998643 34555432 2445567788777776777766554
No 211
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.84 E-value=8.8e-05 Score=66.72 Aligned_cols=91 Identities=14% Similarity=0.310 Sum_probs=76.7
Q ss_pred cCCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCce
Q 012736 226 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGM 305 (457)
Q Consensus 226 ~~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~ 305 (457)
...+.+.|+. .|+.+.+.+.+++.+..|+...+++.|+|+++++|.|.|+.+.++.|..+....++++|.+...+.++.
T Consensus 19 ~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 19 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGS 97 (209)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCC
T ss_pred CCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccc
Confidence 3445666766 778889999999999999999999999999999999999999999999999999999999988776665
Q ss_pred eeEEEecCCcEEE
Q 012736 306 QIFVKTLTGKTIT 318 (457)
Q Consensus 306 ~i~i~~~~g~~~~ 318 (457)
.+ +++.+|-.+.
T Consensus 98 t~-~~~~sGl~~~ 109 (209)
T 3uf8_A 98 TV-VTTESGLKYE 109 (209)
T ss_dssp CC-EECTTSCEEE
T ss_pred cc-cCCCCceEEE
Confidence 43 4455554444
No 212
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.82 E-value=2.5e-06 Score=84.73 Aligned_cols=77 Identities=12% Similarity=0.299 Sum_probs=0.0
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG~ 457 (457)
.+.|.|++ +|....+++.+++++..|+...+++.|+++.+++++|+|+.|.++.|.+++++++|++|++...++||.
T Consensus 30 ~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~ 106 (389)
T 4da1_A 30 HINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGE 106 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred cEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeecccccc
Confidence 45667776 677788999999999999999999999999999999999999999999999999999999999999994
No 213
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.77 E-value=8.7e-05 Score=56.11 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=68.7
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
..|.+.|-..+++...++|.|++++.++-+..++++|+++++-.|.|+++.|+-+..+.-.|+-+|+.+.++..
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~ 81 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPV 81 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECS
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999998754
No 214
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.65 E-value=6.6e-05 Score=61.17 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=60.5
Q ss_pred eeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCC-------------------------------------CceEE
Q 012736 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 348 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~-------------------------------------~q~l~ 348 (457)
.+.|++++|...++.|+.+.||.+++..|+.+.||+.. +|+|-
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 58899999999999999999999999999999999855 33432
Q ss_pred e--cCeeccCCCcccccccccCceEEEEEE
Q 012736 349 F--AGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 349 ~--~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
- ..+-|+++++|.++||.+++++.|+.+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 225689999999999999999998864
No 215
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.60 E-value=8.9e-06 Score=78.16 Aligned_cols=86 Identities=13% Similarity=0.343 Sum_probs=2.9
Q ss_pred EEecCcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEEee
Q 012736 71 LRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 150 (457)
Q Consensus 71 ~~~~~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~~~ 150 (457)
..+...+.|.|+. +|+.+.+.|.++++...|++...++.|++++.+++.|+|+.+.++.|.+++++.+|++|++..+..
T Consensus 16 ~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 16 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccC
Confidence 3445567788876 678899999999999999999999999999999999999999999999999999999999999888
Q ss_pred cceeeeE
Q 012736 151 GGMQIFV 157 (457)
Q Consensus 151 ~~~~i~v 157 (457)
|||..+.
T Consensus 95 g~~~~Yl 101 (360)
T 3ix6_A 95 GGMRTYL 101 (360)
T ss_dssp --CHHHH
T ss_pred chHHHHH
Confidence 8876554
No 216
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.56 E-value=9.7e-05 Score=60.18 Aligned_cols=71 Identities=27% Similarity=0.393 Sum_probs=58.6
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-------------------------------------CeEEE
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-------------------------------------QQRLI 424 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-------------------------------------~q~l~ 424 (457)
.+.|+.++|+..++.|+.+.+|.+++..|+.+.||+.. .|+|.
T Consensus 13 ~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 13 PLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred cEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 47889999999999999999999999999999999855 23331
Q ss_pred E--cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 425 F--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 425 ~--~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
. ++.-|+++.||.++||.++++|.|..+
T Consensus 93 ~dd~~~WLD~srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDHGRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECSSSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccCCCcHHHcCCCCCCEEEEEEE
Confidence 1 125567788999999999999887654
No 217
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.51 E-value=0.00043 Score=52.83 Aligned_cols=70 Identities=14% Similarity=0.304 Sum_probs=64.1
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+.+.|+ .+|..+.+.+..++..+.|....+++.|++++.-+|+|.|..+.++.|..+.++.++++|..+.
T Consensus 22 IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~ 91 (95)
T 2l76_A 22 FPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVV 91 (95)
T ss_dssp EEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEE
T ss_pred EEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEE
Confidence 455566 4788999999999999999999999999999999999999999999999999999999997654
No 218
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.46 E-value=0.00033 Score=52.28 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=53.9
Q ss_pred CCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-----CeEEEEcCeecCCCCcccccCCCCCCEEEE
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 449 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-----~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l 449 (457)
..|+++.+.++...||..|+..+.+.++++.. ..++.-.|..|.++++|++|+|.+||.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 47899999999999999999999999988752 335555788999999999999999999875
No 219
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.04 E-value=0.003 Score=47.75 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=61.3
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC---CCCcccccCCCCCCEEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~---d~~tL~~~~i~~~~~i~l~~ 451 (457)
+...|-|+..+|+...-....++||.+|...|.. .+.++..+.|. |-.+.|. .+.||+++|+.+.++|.|.-
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 4467889999999888999999999999999998 67888888888 4467784 45799999999999998754
No 220
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.00 E-value=0.0001 Score=72.99 Aligned_cols=77 Identities=12% Similarity=0.317 Sum_probs=0.0
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEEEeecCcee
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQ 306 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~~~~~~~~ 306 (457)
+.+.|+. .|..+.+.+++.++...|+...+++.|+|+.+++|+|+|+.+.++.|..+.++.++++|.++..+.++..
T Consensus 31 i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n 107 (389)
T 4da1_A 31 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGEN 107 (389)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred EEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccc
Confidence 4555655 6788889999999999999999999999999999999999999999999999999999998887755543
No 221
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=96.66 E-value=0.006 Score=45.39 Aligned_cols=62 Identities=15% Similarity=0.219 Sum_probs=52.6
Q ss_pred cCCceEEEEeecCccHHHHHHHHhhhcCCCCC-----CeEEEeCCcccCCCccccccccCCCCeEEE
Q 012736 236 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-----QQRLIFAGKQLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 236 ~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~-----~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l 297 (457)
..++++.+.+...-||..|.+.+.+.++++.. +-+..-.+..|.++.+|++|+|.+||.|.+
T Consensus 14 y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 14 YNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp TTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred cCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 57899999999999999999999999997542 234445677899999999999999999853
No 222
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=96.65 E-value=0.0093 Score=44.98 Aligned_cols=70 Identities=19% Similarity=0.360 Sum_probs=59.5
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~ 375 (457)
..|.|+..+|..+.-..+.++|+.+|..-|.. .+.++....|+ |..+.+ +.+.+|.++|+.+.++|.+..
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~ 82 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEA 82 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEe
Confidence 36788999999999999999999999999998 56677777777 677777 567999999999999988864
No 223
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.01 E-value=0.016 Score=47.20 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=60.9
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeec--CC-CCcccccCCCCCCEEEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL--ED-GRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L--~d-~~tL~~~~i~~~~~i~l~~ 451 (457)
+...|-||.++|+...-.+..++||.+|...|... +.++..+.|. |-.+.| +| +.||.++|+.+..+|.|..
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 45788999999999999999999999999999887 8888888887 457788 33 6799999999988877653
No 224
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.90 E-value=0.034 Score=44.12 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=62.1
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--C-CCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--D-GRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d-~~tL~~~~i~~~~~i~l~~r 452 (457)
+...|-||.++|+...-....++||.+|...|....+.+...+.|. |-.+.+. | +.||.++|+.+..+|.+...
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 3467889999999999999999999999999999988887778776 4566776 3 57999999999988887654
No 225
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=95.80 E-value=0.033 Score=44.16 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=61.4
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeecc---CCCcccccccccCceEEEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE---DGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L~---d~~~l~~~~i~~~~~l~l~~~ 376 (457)
..|.|+..+|..+.-.++.++|+.+|..-|....+.+...-.|+ |..+.+. .+.+|.+.|+.+..+|.+...
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~ 90 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA 90 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence 46888999999999999999999999999999877776666676 7777775 478999999999988888754
No 226
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=95.76 E-value=0.1 Score=37.62 Aligned_cols=67 Identities=24% Similarity=0.337 Sum_probs=54.2
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.|+|+|....+ ...++++...|+.+|...+ ++++....+..||..+..+. -+++||.|.+.-..-||
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~V~GG 70 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRVIYGG 70 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEECTTCC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEeccccC
Confidence 58888886654 3567888889999999886 56778888889999997665 57789999998888877
No 227
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=95.60 E-value=0.034 Score=45.14 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=59.9
Q ss_pred eeeEEEecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEE--ecCeec---cCCCcccccccccCceEEEEE
Q 012736 305 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQL---EDGRTLADYNIQKESTLHLVL 375 (457)
Q Consensus 305 ~~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~--~~g~~L---~d~~~l~~~~i~~~~~l~l~~ 375 (457)
..|.|+..+|..+.-.++.++|+.+|..-|... +.++..-.|+ |..+.| +.+.+|.+.|+.+..+|.+..
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~ 118 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQE 118 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEE
Confidence 468889999999999999999999999999887 7766666676 778888 458999999999988888874
No 228
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.21 E-value=0.029 Score=41.30 Aligned_cols=64 Identities=13% Similarity=0.227 Sum_probs=55.5
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc---CeecCCCCcccccCCCC
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA---GKQLEDGRTLADYNIQK 443 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~---g~~L~d~~tL~~~~i~~ 443 (457)
++.+.|.....+...+.|+|..++++|-..|+++-.+.|++-.|... +.+|+=+++|.||||++
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 45566667777788999999999999999999999999999998864 55788889999999986
No 229
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.10 E-value=0.11 Score=40.83 Aligned_cols=63 Identities=38% Similarity=0.494 Sum_probs=46.3
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhc--CCC------CCCeEEEE----cCeecCCC-------------CcccccCCCCC
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGKQLEDG-------------RTLADYNIQKE 444 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~----~g~~L~d~-------------~tL~~~~i~~~ 444 (457)
+..+.++|-..+||.++|++|-+.. |.| ++...|-+ .|+.|.|. .||+.|+|.+|
T Consensus 23 ~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 102 (111)
T 4e71_A 23 VDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRDG 102 (111)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCTT
T ss_pred CCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCCC
Confidence 4468888889999999999997764 454 34555665 25566652 48999999999
Q ss_pred CEEEEEEe
Q 012736 445 STLHLVLR 452 (457)
Q Consensus 445 ~~i~l~~r 452 (457)
+++.++-|
T Consensus 103 atl~l~~~ 110 (111)
T 4e71_A 103 ATLILSKV 110 (111)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99988764
No 230
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.42 E-value=0.057 Score=42.46 Aligned_cols=64 Identities=34% Similarity=0.402 Sum_probs=43.7
Q ss_pred CCcEEEEEecccccHHHHHHHHhhh--hCCCCcc------ceEee----ccEEccCC-------------Cccccccccc
Q 012736 9 TGKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQLEDG-------------RTLADYNIQK 63 (457)
Q Consensus 9 ~g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~~------q~l~~----~g~~L~~~-------------~tl~~y~i~~ 63 (457)
++..+++.|-..|||..+|+||-+. .|.|.++ ..|-| .|+.|.|. +||++|+|.+
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 3567888899999999999999653 5666553 33444 34556541 5899999999
Q ss_pred ccceeEEEE
Q 012736 64 ESTLHLVLR 72 (457)
Q Consensus 64 ~sti~l~~~ 72 (457)
++++-++.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999987653
No 231
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=94.21 E-value=0.16 Score=40.07 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=58.7
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE--EcCeecC--CCCcccccCCCCCCEEEEEE
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~--~~g~~L~--d~~tL~~~~i~~~~~i~l~~ 451 (457)
...|-||..+|+.+.-.+..++||.+|...|... +..+..+.|. |-.+.|. .+.||+++|+.+..+|.|.-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678889999998888999999999999999965 5566777776 4467776 46799999999999987754
No 232
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=93.96 E-value=0.11 Score=46.69 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=53.2
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEE--E-c--CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--F-A--GKQLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~--~-~--g~~L~d-~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++..++..+||.+|+..++...+||++ ..||- + . ...|+| ++||.++++.++..|.+-.|...|
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~~dg 212 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKNEDG 212 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECCCC-
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 4677889999999999999999999997 67764 2 2 235665 469999999999999999987665
No 233
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.92 E-value=0.41 Score=38.38 Aligned_cols=64 Identities=28% Similarity=0.414 Sum_probs=48.2
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhc--CCC------CCCeEEEE-c---Ce-ecCCC-------------CcccccCCC
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF-A---GK-QLEDG-------------RTLADYNIQ 442 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~-~---g~-~L~d~-------------~tL~~~~i~ 442 (457)
.+..+.++|-..+||.++|++|-+.. |.| ++...|-+ . |+ .|.|. .||+.|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 44568888889999999999997764 454 35666766 2 33 36542 589999999
Q ss_pred CCCEEEEEEe
Q 012736 443 KESTLHLVLR 452 (457)
Q Consensus 443 ~~~~i~l~~r 452 (457)
+|+++.+..+
T Consensus 95 dgatv~l~~~ 104 (127)
T 3h6n_A 95 EGASLAMSLI 104 (127)
T ss_dssp TTCEEEEEEC
T ss_pred CCCEEEEEEc
Confidence 9999999765
No 234
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.84 E-value=0.17 Score=40.03 Aligned_cols=71 Identities=18% Similarity=0.228 Sum_probs=57.6
Q ss_pred ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE--ECCeecC--CCCCccccCcCcCcEEEEEE
Q 012736 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI--FAGKQLE--DGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~--~~g~~L~--d~~tL~~y~i~~~~~i~l~~ 223 (457)
...|.|+.++|+.+.-....++||.+|...|... +.....+.|+ |-.+.+. .+.||.+.|+.+..++.+..
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~ 97 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEE 97 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEe
Confidence 4678888999999998999999999999999865 5555667776 4577775 46899999999998886644
No 235
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=93.84 E-value=0.13 Score=37.49 Aligned_cols=66 Identities=14% Similarity=0.350 Sum_probs=50.1
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
|+|.|+........++++++.||++|-. ..|+|++.-.+..||+.+..+. +.+|+.|.+.--.-||
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~~V~G~ 66 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLRLIKGG 66 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECSSCSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEEeeccc
Confidence 6677776544556789999999998765 4799999988888999887665 2348999886665555
No 236
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=93.77 E-value=0.16 Score=45.99 Aligned_cols=65 Identities=20% Similarity=0.305 Sum_probs=53.5
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEE-c----CeecCC-CCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~-~----g~~L~d-~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++..++..+||.+|+..++...+||++ ..||-. . ...|.| +.||.++++.++..|.+-.|..-|
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 3567789999999999999999999997 577754 3 336665 579999999999999999886554
No 237
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=93.68 E-value=0.17 Score=41.19 Aligned_cols=69 Identities=20% Similarity=0.338 Sum_probs=55.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhc-CCCCCCeEEE--EcCeecCC-CCcccccCCCCCCEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 447 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~-gip~~~q~l~--~~g~~L~d-~~tL~~~~i~~~~~i 447 (457)
+...|-|+..+|+...-.+..++||.+|...|.... +.+...+.|. |-.+.|+| +.||.++|+.+..+|
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 356788999999999999999999999999999863 4556677776 45778875 579999999875443
No 238
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=93.62 E-value=0.47 Score=34.82 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=50.6
Q ss_pred EEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCcccCCCccccccccCCCCeEEEE
Q 012736 241 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 241 ~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
+.-.++-..++..||..++.+.|++.+.+.+...+..|+++++|.+.|++-+..+.+.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQin 62 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLS 62 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEE
Confidence 3445666778999999999999999999999999988999999999999988887653
No 239
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=93.05 E-value=0.46 Score=38.10 Aligned_cols=67 Identities=25% Similarity=0.402 Sum_probs=48.8
Q ss_pred EcCCCcEEEEEecccccHHHHHHHHhhh--hCCCCc------cceEee----ccEE-ccC--------C-----Cccccc
Q 012736 6 KTLTGKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGKQ-LED--------G-----RTLADY 59 (457)
Q Consensus 6 ~~~~g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~------~q~l~~----~g~~-L~~--------~-----~tl~~y 59 (457)
...++..+++.|-..|||..+|+||-+. .|.|.+ ...|-| .|+. |.| + +||+.|
T Consensus 12 ~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY 91 (127)
T 3h6n_A 12 QGCGMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHY 91 (127)
T ss_dssp ETSCCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTT
T ss_pred cCCCCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEecccccc
Confidence 3445677889999999999999999664 566653 344544 2332 544 1 589999
Q ss_pred ccccccceeEEEE
Q 012736 60 NIQKESTLHLVLR 72 (457)
Q Consensus 60 ~i~~~sti~l~~~ 72 (457)
+|.+++++-++.+
T Consensus 92 ~V~dgatv~l~~~ 104 (127)
T 3h6n_A 92 KIPEGASLAMSLI 104 (127)
T ss_dssp TCCTTCEEEEEEC
T ss_pred CCCCCCEEEEEEc
Confidence 9999999988765
No 240
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.91 E-value=0.29 Score=39.82 Aligned_cols=65 Identities=32% Similarity=0.512 Sum_probs=46.7
Q ss_pred CcEEEEEecccccHHHHHHHHhhh--hCCCCcc------ceEee----ccEE-ccCC-------------Cccccccccc
Q 012736 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPDQ------QRLIF----AGKQ-LEDG-------------RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~~------q~l~~----~g~~-L~~~-------------~tl~~y~i~~ 63 (457)
...+++.|-..|||..+|+||-+. -|+|.++ --|-| .|+. |.|. +||+.|+|.+
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 367889999999999999999764 5676543 23333 2433 5542 4899999999
Q ss_pred ccceeEEEEec
Q 012736 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
++++-++.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999887643
No 241
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=92.85 E-value=0.25 Score=40.20 Aligned_cols=68 Identities=21% Similarity=0.351 Sum_probs=54.7
Q ss_pred ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhh-CCCCCceEEE--ECCeecCC-CCCccccCcCcCcEE
Q 012736 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE-GIPPDQQRLI--FAGKQLED-GRTLADYNIQKESTL 219 (457)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~-gip~~~q~L~--~~g~~L~d-~~tL~~y~i~~~~~i 219 (457)
...|.|+..+|..+.-....++||.+|...|.... +.+...+.|+ |-.+.++| +.||.+.|+.+...+
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psavl 123 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVIV 123 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEEE
T ss_pred cEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceEE
Confidence 46778888999999999999999999999998864 3555667776 45788865 689999999985544
No 242
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.35 E-value=0.28 Score=36.43 Aligned_cols=47 Identities=11% Similarity=0.158 Sum_probs=42.0
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 427 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g 427 (457)
.+|.|.|.+. -++.+.|+++.+..+|..+|+++.++|++...|.|..
T Consensus 4 ~~~~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 4 MAYTLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp SCEEEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred CcEEEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 4577888876 4899999999999999999999999999999999954
No 243
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=92.32 E-value=0.56 Score=34.41 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=53.8
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
+.-.++-+.++..||..++.+.|++.+.-.+...+..|+++++|.+-+|+-.-.+.+.+-.
T Consensus 5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 3445677889999999999999999999999999999999999999999988888887654
No 244
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=92.25 E-value=0.56 Score=38.20 Aligned_cols=63 Identities=32% Similarity=0.488 Sum_probs=47.0
Q ss_pred CEEEEEecCCccHHHHHHHHhhhc--CCCC------CCeEEEE----cCe-ecCCC-------------CcccccCCCCC
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF----AGK-QLEDG-------------RTLADYNIQKE 444 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~--gip~------~~q~l~~----~g~-~L~d~-------------~tL~~~~i~~~ 444 (457)
..+.++|-..+||.++|++|-+.. |.|- ++.-|-+ .|+ .|.|. .||+.|+|.+|
T Consensus 41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg 120 (138)
T 2r2o_A 41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 120 (138)
T ss_dssp CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence 458889999999999999998775 4543 3445554 243 36553 48999999999
Q ss_pred CEEEEEEec
Q 012736 445 STLHLVLRL 453 (457)
Q Consensus 445 ~~i~l~~r~ 453 (457)
+++.+.-|.
T Consensus 121 a~l~l~~~~ 129 (138)
T 2r2o_A 121 ATVALVPCL 129 (138)
T ss_dssp CEEEEEEC-
T ss_pred CEEEEEECC
Confidence 999998764
No 245
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.99 E-value=0.49 Score=37.53 Aligned_cols=64 Identities=31% Similarity=0.481 Sum_probs=47.0
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhc--CCCC------CCeEEEE-cC---e-ecCCC-------------CcccccCCCC
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKE--GIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQK 443 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~--gip~------~~q~l~~-~g---~-~L~d~-------------~tL~~~~i~~ 443 (457)
...+.++|-..+||.++|++|-+.. |.|. +...|-+ .| + .|.|. .||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 3457888889999999999997764 5553 4555665 23 3 35542 5899999999
Q ss_pred CCEEEEEEec
Q 012736 444 ESTLHLVLRL 453 (457)
Q Consensus 444 ~~~i~l~~r~ 453 (457)
|+++.+..|.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998764
No 246
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.89 E-value=0.28 Score=36.16 Aligned_cols=64 Identities=13% Similarity=0.235 Sum_probs=54.7
Q ss_pred ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEE---CCeecCCCCCccccCcCc
Q 012736 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF---AGKQLEDGRTLADYNIQK 215 (457)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~---~g~~L~d~~tL~~y~i~~ 215 (457)
.+.+.|.....+...+.|+|.-+.+++--.|.++..+.++...|.. .+..|+-+++|.||||++
T Consensus 10 TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 10 TVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred EEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 3455666666777889999999999999999999999999888864 367899999999999997
No 247
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=91.83 E-value=0.55 Score=35.29 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=48.2
Q ss_pred CceeeEEEcCCCCEEEEEecCC-ccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 379 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~-~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..|+|.|+ |+ .++++.. .||.+|.+.+ ++++....+..||..+..+ ...+.-+++||.|.+.-..-||
T Consensus 19 ~~M~I~vN---Ge--~~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V~GG 87 (87)
T 1tyg_B 19 GRHMLQLN---GK--DVKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFVGGG 87 (87)
T ss_dssp ---CEEET---TE--EECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEECCC-
T ss_pred cceEEEEC---CE--EEECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEcccccC
Confidence 45777665 43 4566777 8999999876 5777777888899988643 3344568889999999888777
No 248
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=91.65 E-value=1.3 Score=34.00 Aligned_cols=73 Identities=14% Similarity=0.322 Sum_probs=50.9
Q ss_pred CceeeEEEcCC------C-CEEEEEecCCccHHHHHHHHhhhcC-C----------CCCCeEEEEcCeecCCCCcccccC
Q 012736 379 GGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADYN 440 (457)
Q Consensus 379 ~~~~i~v~~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~l~~~g~~L~d~~tL~~~~ 440 (457)
++|+|.|+... | ....++++...||.+|...+..... + ......+..||+.... +.-
T Consensus 8 ~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~ 82 (98)
T 1vjk_A 8 GSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEE 82 (98)
T ss_dssp -CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCB
T ss_pred CcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCC
Confidence 57888887542 3 4677888888999999999987641 1 1234567788887764 456
Q ss_pred CCCCCEEEEEEecCCC
Q 012736 441 IQKESTLHLVLRLRGG 456 (457)
Q Consensus 441 i~~~~~i~l~~r~~GG 456 (457)
+++|+.|.+.-..-||
T Consensus 83 L~dGDeV~i~ppv~GG 98 (98)
T 1vjk_A 83 LKDGDVVGVFPPVSGG 98 (98)
T ss_dssp CCTTCEEEEESCC---
T ss_pred CCCCCEEEEECCCCCC
Confidence 7889999998887777
No 249
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=90.01 E-value=1.2 Score=32.20 Aligned_cols=58 Identities=14% Similarity=0.370 Sum_probs=42.4
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCC--CCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+++ ...||.+|...+....++.. ....+.-||+.+.+ .+.-+++|+.|.+.-...||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~PpvsGG 74 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVCGG 74 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBCCC
T ss_pred EEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCCCC
Confidence 3566 67899999999987544332 44567778887543 24557889999999988888
No 250
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=88.58 E-value=1.1 Score=35.52 Aligned_cols=63 Identities=32% Similarity=0.513 Sum_probs=45.5
Q ss_pred CcEEEEEecccccHHHHHHHHhh--hhCCCCcc------ceEee-cc---E-EccC---------C----Cccccccccc
Q 012736 10 GKTITLEVESSDTIDNVKAKIQD--KEGIPPDQ------QRLIF-AG---K-QLED---------G----RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~--~~~ip~~~------q~l~~-~g---~-~L~~---------~----~tl~~y~i~~ 63 (457)
+..+++.|-..|||..+|+||-+ +.|.|.++ ..|-| .| + .|.| + +||++|+|.+
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 45688888899999999999965 35676553 34444 22 3 2444 1 5899999999
Q ss_pred ccceeEEEE
Q 012736 64 ESTLHLVLR 72 (457)
Q Consensus 64 ~sti~l~~~ 72 (457)
++++-++.+
T Consensus 106 gatl~l~~~ 114 (117)
T 4e74_A 106 GSVVALVSK 114 (117)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999988765
No 251
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=88.54 E-value=3.3 Score=33.04 Aligned_cols=61 Identities=33% Similarity=0.502 Sum_probs=42.9
Q ss_pred CEEEEEecCCccHHHHHHHHhhh----cCCCC----CCeEEEE--c--CeecCC----------C----CcccccCCCCC
Q 012736 391 KTITLEVESSDTIDNVKAKIQDK----EGIPP----DQQRLIF--A--GKQLED----------G----RTLADYNIQKE 444 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~----~gip~----~~q~l~~--~--g~~L~d----------~----~tL~~~~i~~~ 444 (457)
..+.++|-..+||.++|++|-+. .|.|- +.+.|-| + |..|.| . .||+.|+|.+|
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 46788888999999999998654 36654 3444544 1 223332 1 47899999999
Q ss_pred CEEEEEE
Q 012736 445 STLHLVL 451 (457)
Q Consensus 445 ~~i~l~~ 451 (457)
+++.+..
T Consensus 119 atlal~k 125 (126)
T 3kuz_A 119 STIKVFK 125 (126)
T ss_dssp CEEEEEE
T ss_pred CEEEEee
Confidence 9998764
No 252
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=87.91 E-value=0.91 Score=31.99 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=43.4
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++++...||.+|...+ ++++....+..||..+..+ ...+.-+++|+.|.+.-..-||
T Consensus 9 ~~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~~gD~v~i~~~V~GG 66 (66)
T 1f0z_A 9 AMQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPRE-QWAQHIVQDGDQILLFQVIAGG 66 (66)
T ss_dssp EECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECHH-HHTTCCCCTTEEECEEESCCCC
T ss_pred EEEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCch-hcCCcCCCCCCEEEEEeecccC
Confidence 34667889999999887 5677777888899987632 1223457789999998877777
No 253
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=86.81 E-value=2.5 Score=38.08 Aligned_cols=62 Identities=19% Similarity=0.284 Sum_probs=50.5
Q ss_pred EEeeecCCchHHHHHHHHhhhhCCCCC-ceEEEE-C----CeecCC-CCCccccCcCcCcEEEEEEEec
Q 012736 165 ITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF-A----GKQLED-GRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 165 ~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~~-~----g~~L~d-~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
++..++..+||.+|++.+.+.++++.+ .-||-. . ...|.| +.||.++++.++..|.+-.+..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 557789999999999999999999997 588853 3 346665 5899999999999997766643
No 254
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=86.61 E-value=1.5 Score=32.54 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=40.6
Q ss_pred eEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCc
Q 012736 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK 276 (457)
Q Consensus 230 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~ 276 (457)
.+.|+....-++.+.|.++-+..+|+++|.+++++|++.-.|.|..+
T Consensus 5 ~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred cEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 35566655578999999999999999999999999999999999764
No 255
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=86.29 E-value=3.4 Score=30.81 Aligned_cols=61 Identities=15% Similarity=0.245 Sum_probs=46.6
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcC-C-----C-----CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~g-i-----p-----~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
....++++...||.+|.+.+..... + . .....+.-||+.... +.-+++|+.|.+.-..-||
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~GG 89 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVSGG 89 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCSCC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCCCC
Confidence 4677888888999999999988752 1 0 023577788988875 4457789999999988887
No 256
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=86.02 E-value=1.5 Score=39.06 Aligned_cols=62 Identities=23% Similarity=0.386 Sum_probs=50.0
Q ss_pred eEEeeecCCchHHHHHHHHhhhhCCCCC-ceEEE--EC-C--eecCC-CCCccccCcCcCcEEEEEEEe
Q 012736 164 TITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLI--FA-G--KQLED-GRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 164 ~~~~~v~~~~tV~~lK~~i~~~~gip~~-~q~L~--~~-g--~~L~d-~~tL~~y~i~~~~~i~l~~~~ 225 (457)
..++.++..+||.+|++.+.+.+++|.+ ..||- +. + ..|++ +.||.++++.++..|.+-++.
T Consensus 141 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 141 VVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred ceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 3567789999999999999999999987 57873 32 2 45655 579999999999999776664
No 257
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=85.67 E-value=0.95 Score=32.73 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=45.5
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+|+. .++ +..||++|-.. .++++...-+..||..+..+ ..++.-+++||.|.+....-||
T Consensus 6 NG~~--~e~-~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~-~~~~~~L~dGD~veIv~~VgGG 65 (73)
T 2kl0_A 6 NGEQ--REV-QSASVAALMTE----LDCTGGHFAVALNYDVVPRG-KWDETPVTAGDEIEILTPRQGG 65 (73)
T ss_dssp TTEE--ECC-CCSBHHHHHHH----TTCCSSSCEEEESSSEECHH-HHTTCBCCTTCEEEEECCCCCC
T ss_pred CCEE--EEc-CCCcHHHHHHH----cCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEccccCC
Confidence 3543 445 67899998775 57888888889999988542 3445567789999999888888
No 258
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=85.24 E-value=1.9 Score=31.23 Aligned_cols=61 Identities=11% Similarity=0.289 Sum_probs=45.1
Q ss_pred EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEE
Q 012736 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
|+|+|+..+.+...++++...||++|=+ ..|+|++.-.+..+|+.+..+. +.+|+.+.+.-
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d~------~l~GD~VeIv~ 61 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPEDQ------SVEVDRVKVLR 61 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTTS------SSCCCCEEECS
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHHH------CCCCCEEEEEE
Confidence 6788887755556688999999999764 4699998888888998876544 23477666643
No 259
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=84.19 E-value=0.96 Score=36.80 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=31.2
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 426 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~ 426 (457)
..+.|..++|+.+||..|++..|+|+++|||-..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 5689999999999999999999999999998764
No 260
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=83.44 E-value=3 Score=30.41 Aligned_cols=59 Identities=7% Similarity=0.153 Sum_probs=43.3
Q ss_pred EEEEEecCCccHHHHHHHHhhhcC-----CCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~g-----ip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...++ .+..||.+|...+..... ++.....+..||+.... +.-+++|+.|.+.-..-||
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~-----~~~l~~gD~V~i~Ppv~GG 81 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF-----DHPLTDGDEVAFFPPVTGG 81 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT-----TCBCCTTCEEEEECCCCCC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC-----CCCCCCCCEEEEeCCCCCC
Confidence 45555 567899999999986632 23344578889988754 4457789999998888887
No 261
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=83.16 E-value=2.2 Score=34.00 Aligned_cols=60 Identities=33% Similarity=0.486 Sum_probs=41.5
Q ss_pred cEEEEEecccccHHHHHHHHhhh----hCCCCcc----ceEee----ccEEccC----------C----Ccccccccccc
Q 012736 11 KTITLEVESSDTIDNVKAKIQDK----EGIPPDQ----QRLIF----AGKQLED----------G----RTLADYNIQKE 64 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~----~~ip~~~----q~l~~----~g~~L~~----------~----~tl~~y~i~~~ 64 (457)
..+++.|-..|||..+|+||-+. .|.|.++ ..|-| .|..|.| + +||+.|+|.++
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56888999999999999999553 5777642 23333 1222222 1 47888999999
Q ss_pred cceeEE
Q 012736 65 STLHLV 70 (457)
Q Consensus 65 sti~l~ 70 (457)
+++-++
T Consensus 119 atlal~ 124 (126)
T 3kuz_A 119 STIKVF 124 (126)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 998765
No 262
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=83.11 E-value=7.1 Score=29.27 Aligned_cols=62 Identities=15% Similarity=0.229 Sum_probs=43.5
Q ss_pred EEEEecCCccHHHHHHHHhhhcC-C-----C-------CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEG-I-----P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~g-i-----p-------~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..+++ +..||.+|...+..+.. + . .....+.-||+...+..-+ +.-+++|+.|.+.-..-||
T Consensus 19 ~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~~-~~~L~~gDeV~i~Ppv~GG 93 (93)
T 3dwg_C 19 KSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGGL-ATAIADGDSVTILPAVAGG 93 (93)
T ss_dssp SEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTGG-GCBCCTTCEEEEEECCTTC
T ss_pred eEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCCC-CcCCCCCCEEEEECCCCCC
Confidence 34664 56899999999998752 0 1 1135677788887643222 3457889999999999888
No 263
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=82.51 E-value=5.3 Score=37.08 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=55.3
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEEE---cCe--ecCCCCcccccCCCCCCEEEEEEec
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGK--QLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~---~g~--~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
++.+.|..++| +..+.+++++|+.++-..|++..|+.... +-|.+ +|. -|+.++++.+.++..+....+.+|.
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~fr~ 79 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKFRA 79 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEEEE
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEEEE
Confidence 35677788888 68899999999999999999999987644 45555 232 4677788888877666666666654
No 264
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=82.28 E-value=1.5 Score=32.18 Aligned_cols=61 Identities=15% Similarity=0.328 Sum_probs=46.2
Q ss_pred CCCEEEEEec--CCccHHHHHHHHhhhcCCC-CCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 389 TGKTITLEVE--SSDTIDNVKAKIQDKEGIP-PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~--~~~tV~~lK~~i~~~~gip-~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+|+ ..+++ .+.||.+|-..+ |++ +...-+..||..+..+ ..++.-+++||.|.+....-||
T Consensus 6 NGe--~~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr~-~~~~~~L~dGD~IEIv~~VgGG 69 (78)
T 2k5p_A 6 NGK--PSTVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLERE-AFDATTVKDGDAVEFLYFMGGG 69 (78)
T ss_dssp TTE--EEECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCTT-HHHHCEECSSBCEEECCCCCCS
T ss_pred CCE--EEEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECChH-HcCcccCCCCCEEEEEeeecCC
Confidence 354 34556 779999998754 677 7777888999988654 4555667789999998888888
No 265
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=82.22 E-value=5.1 Score=37.65 Aligned_cols=75 Identities=11% Similarity=0.122 Sum_probs=57.7
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEE--cCe--ecCCCCcccccCCCCCCEEEEEEe
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIF--AGK--QLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~--~g~--~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
+.++.+.|..++| ++.+.+++++|+.+|-..|+...|+... .+-|.| +|. -|+.++++.+.++..+....+.+|
T Consensus 20 ~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~fr 98 (314)
T 1h4r_A 20 PKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHFL 98 (314)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEEE
T ss_pred CCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEEE
Confidence 4567888888998 7889999999999999999999998753 345555 333 377788899988776666666665
Q ss_pred c
Q 012736 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
.
T Consensus 99 ~ 99 (314)
T 1h4r_A 99 A 99 (314)
T ss_dssp E
T ss_pred E
Confidence 3
No 266
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=80.99 E-value=11 Score=26.56 Aligned_cols=63 Identities=22% Similarity=0.283 Sum_probs=44.1
Q ss_pred ceeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEE
Q 012736 152 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 152 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~ 224 (457)
.|.|.|....+ ...+++....||.+|.+.+ +++++.-....+|+....+. -+++|+.|.++..
T Consensus 4 ~m~i~vNg~~~-~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~~-----~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 4 GMKFTVITDDG-KKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDEE-----EIFDGDIIEVIRV 66 (70)
T ss_dssp CEEEEEEETTE-EEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTTS-----BCCTTCEEEEEEC
T ss_pred eEEEEEeCccC-ceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCcc-----cCCCCCEEEEEec
Confidence 46666654322 2356777788999999876 56666667778898886554 6888999877643
No 267
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=80.70 E-value=3 Score=30.06 Aligned_cols=59 Identities=14% Similarity=0.218 Sum_probs=43.7
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCe--EEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q--~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
...++++...||.+|.+.+..... ..... .+..||+....+ .-+++||.|.+.-..-||
T Consensus 17 ~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~-----~~L~~gD~V~i~ppv~GG 77 (77)
T 2q5w_D 17 QEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS-----DFIQPNDTVALIPPVSGG 77 (77)
T ss_dssp EEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT-----SEECTTCEEEEECSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC-----CCcCCCCEEEEECCCCCC
Confidence 456777788899999999887641 01223 678899988754 457789999998877777
No 268
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=80.28 E-value=1.7 Score=35.38 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=32.6
Q ss_pred cEEEEEecccccHHHHHHHHhhhhCCCCccceEeec
Q 012736 11 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA 46 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~ 46 (457)
...++.|..+.|+.++++.|.+..|+|+++|+|+.-
T Consensus 56 ~~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~~ 91 (130)
T 2kvr_A 56 KYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPM 91 (130)
T ss_dssp SCEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEEC
T ss_pred CcceEEEeccCcHHHHHHHHHHHhCCCcccEEEEEe
Confidence 455789999999999999999999999999999874
No 269
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=80.13 E-value=4.4 Score=28.13 Aligned_cols=60 Identities=13% Similarity=0.312 Sum_probs=43.4
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
+|+.+ ++ ...||.+|...+ ++++....+..||..+..+ .-.+.-+++|+.|.+.-..-||
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~V~GG 64 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVALMQGG 64 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEECCCC-
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEeecccC
Confidence 45444 55 678999999887 4667777888899988643 2234457889999998888777
No 270
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=79.58 E-value=11 Score=28.49 Aligned_cols=71 Identities=24% Similarity=0.263 Sum_probs=55.8
Q ss_pred eEEEEcCCC---cEEEEEecccccHHHHHHHHhhhhCCCCcc--ceEeec---cEEccCCCcccccccccccceeEEEE
Q 012736 2 QIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g---~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~--q~l~~~---g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
.|+|..++. ...+++|...--|..+..|+-++.+++.+. --|.+- -..|.-..||..|+|+..+.+++...
T Consensus 21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 589999775 678899999999999999999999887653 233332 23466678999999999999988653
No 271
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=78.75 E-value=4.9 Score=41.01 Aligned_cols=62 Identities=29% Similarity=0.489 Sum_probs=44.7
Q ss_pred cEEEEEEeCCCCHHHHHHHHhhh--hCCCC------CCeEEEe-cC---c-ccccc-------------CcccccccccC
Q 012736 87 KTITLEVESSDTIDNVKAKIQDK--EGIPP------DQQRLIF-AG---K-QLEDG-------------RTLADYNIQKE 140 (457)
Q Consensus 87 ~~~~l~v~~~~tV~~lK~~i~~~--~gip~------~~q~L~~-~g---~-~L~d~-------------~tl~~y~i~~~ 140 (457)
..+.+.|-..|||.++|+||-+. .|.|- ++..|-+ .| + .|.|. .||++|+|.+|
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45888899999999999999864 35553 3444544 22 2 24431 49999999999
Q ss_pred CcceeEEE
Q 012736 141 STLHLVLR 148 (457)
Q Consensus 141 s~i~l~~~ 148 (457)
+++-++.+
T Consensus 354 a~v~L~p~ 361 (644)
T 3hm6_X 354 ATVALVPC 361 (644)
T ss_dssp CEEEEEEC
T ss_pred cEEEEEec
Confidence 99887654
No 272
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=76.69 E-value=0.83 Score=33.36 Aligned_cols=54 Identities=11% Similarity=0.260 Sum_probs=42.2
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+++++..||.+|...+ ++++....+..||+....+ .-+++||.|.+.-..-||
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~ppv~GG 77 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPVVSGG 77 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCCCCCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcccccC
Confidence 45667789999998876 4677777788899988765 457789999888777776
No 273
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=76.36 E-value=11 Score=28.46 Aligned_cols=70 Identities=11% Similarity=0.268 Sum_probs=45.8
Q ss_pred cCcEEEEEEccC------C-cEEEEEEeCCCCHHHHHHHHhhhhC-C----------CCCCeEEEecCccccccCccccc
Q 012736 74 RGGMQIFVKTLT------G-KTITLEVESSDTIDNVKAKIQDKEG-I----------PPDQQRLIFAGKQLEDGRTLADY 135 (457)
Q Consensus 74 ~~~~~i~vk~~~------g-~~~~l~v~~~~tV~~lK~~i~~~~g-i----------p~~~q~L~~~g~~L~d~~tl~~y 135 (457)
.+.|.|.|+... | ....+++....||.+|.+.+..... + ....-.+..+|+.... ++
T Consensus 7 ~~~~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~ 81 (98)
T 1vjk_A 7 HGSVKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DE 81 (98)
T ss_dssp --CEEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TC
T ss_pred cCcEEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CC
Confidence 367888888543 3 4677888888999999999876531 1 1123456667776642 55
Q ss_pred ccccCCcceeEEE
Q 012736 136 NIQKESTLHLVLR 148 (457)
Q Consensus 136 ~i~~~s~i~l~~~ 148 (457)
-+++|+.|.+...
T Consensus 82 ~L~dGDeV~i~pp 94 (98)
T 1vjk_A 82 ELKDGDVVGVFPP 94 (98)
T ss_dssp BCCTTCEEEEESC
T ss_pred CCCCCCEEEEECC
Confidence 6778888777543
No 274
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=75.72 E-value=9.6 Score=39.18 Aligned_cols=74 Identities=15% Similarity=0.265 Sum_probs=57.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCC-CeEEEEc---C--eecCCCCcccccCCCCCCEEEEEEe
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD-QQRLIFA---G--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~-~q~l~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.++.+.|..++| ++.+.|++++|+.+|-..|+...|+... .+-|.|. | .-|+.++++.+.++..+....+.+|
T Consensus 3 k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 3 KSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEEE
T ss_pred ceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEEE
Confidence 456788888888 6889999999999999999999998654 4556653 2 2566778888888777777666666
Q ss_pred c
Q 012736 453 L 453 (457)
Q Consensus 453 ~ 453 (457)
.
T Consensus 82 v 82 (575)
T 2i1j_A 82 A 82 (575)
T ss_dssp E
T ss_pred E
Confidence 4
No 275
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=75.34 E-value=14 Score=28.06 Aligned_cols=71 Identities=25% Similarity=0.305 Sum_probs=52.7
Q ss_pred eeeEEEcCCC---CEEEEEecCCccHHHHHHHHhhhcCCCCCC--eEEEEcCe---ecCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTG---KTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFAGK---QLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g---~~~~l~v~~~~tV~~lK~~i~~~~gip~~~--q~l~~~g~---~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
..|+|.+++. ...++.|..+.-|+.+..++-+..+++.+- --|-..-+ .|.-..||..|||+.++.++.+-
T Consensus 20 L~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp 98 (102)
T 2kmc_A 20 LVVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP 98 (102)
T ss_dssp EEEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred EEEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence 4577777553 568899999999999999999888776542 22333222 45677899999999999888764
No 276
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=74.94 E-value=12 Score=27.93 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=38.2
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEEEcC
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAG 427 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~g 427 (457)
..|+|.+.. +|..+.+.++++.+..+|.+++.+..+++.++ +.+.|-.
T Consensus 5 ~~vkvK~~~-~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~D 53 (89)
T 1vd2_A 5 SQVRVKAYY-RGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWID 53 (89)
T ss_dssp SCEEEEEES-SSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECC
T ss_pred CeEEEEEEe-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEEC
Confidence 345565554 47799999999999999999999999998665 6677743
No 277
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=74.18 E-value=13 Score=37.88 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=46.5
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhc--CCC------CCCeEEEE----cCe-ecCCC-------------CcccccCCCC
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKE--GIP------PDQQRLIF----AGK-QLEDG-------------RTLADYNIQK 443 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~--gip------~~~q~l~~----~g~-~L~d~-------------~tL~~~~i~~ 443 (457)
...+.++|-..+||.++|++|-+.. |.| +++..|-+ .|+ .|.|. .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 3567888999999999999998764 444 45556655 233 35442 5899999999
Q ss_pred CCEEEEEEec
Q 012736 444 ESTLHLVLRL 453 (457)
Q Consensus 444 ~~~i~l~~r~ 453 (457)
|+++.++-|.
T Consensus 326 ga~v~L~p~~ 335 (627)
T 3ig3_A 326 GSLVALVPKQ 335 (627)
T ss_dssp TCEEEEEEC-
T ss_pred CceEEEEecc
Confidence 9999987664
No 278
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=74.00 E-value=5.8 Score=40.48 Aligned_cols=63 Identities=33% Similarity=0.522 Sum_probs=45.8
Q ss_pred cEEEEEecccccHHHHHHHHhh--hhCCCCccc------eEee----ccE-EccCC-------------Ccccccccccc
Q 012736 11 KTITLEVESSDTIDNVKAKIQD--KEGIPPDQQ------RLIF----AGK-QLEDG-------------RTLADYNIQKE 64 (457)
Q Consensus 11 ~~~~~~v~~~dtv~~ik~ki~~--~~~ip~~~q------~l~~----~g~-~L~~~-------------~tl~~y~i~~~ 64 (457)
..+++.|-..|||..+|+||-+ +.|.|.+++ .|-| .|+ .|.|. +||++|+|.++
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 4688888899999999999965 467776543 3444 233 24441 58999999999
Q ss_pred cceeEEEEe
Q 012736 65 STLHLVLRL 73 (457)
Q Consensus 65 sti~l~~~~ 73 (457)
+++-|+.+.
T Consensus 354 a~v~L~p~~ 362 (644)
T 3hm6_X 354 ATVALVPCL 362 (644)
T ss_dssp CEEEEEEC-
T ss_pred cEEEEEecc
Confidence 999887654
No 279
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=73.83 E-value=12 Score=27.60 Aligned_cols=62 Identities=13% Similarity=0.254 Sum_probs=42.9
Q ss_pred EEEecCCccHHHHHHHHhhhcC------C-----CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~g------i-----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++++...||.+|...+..... + ......+..||+...... -.+.-+++|+.|.+.-..-||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~ppv~GG 90 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFPPVAGG 90 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEECCTTCC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeCCCCCC
Confidence 3456667899999999987741 1 113456788888775321 124457889999998888777
No 280
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=73.15 E-value=16 Score=34.20 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=53.4
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEe--CCcc--cCCCccccccccCCCCeEEEEE
Q 012736 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF--AGKQ--LEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 227 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~--~g~~--L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..+.+.|..++| ++.+.++++.|+.+|-+.|+++.||...+ .-|.+ .|.. |+.++++.+..+..+....+..
T Consensus 21 ~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~~~~~l~f 97 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKEEPVTFHF 97 (314)
T ss_dssp CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTTSBGGGSSCCCSSSEEEEE
T ss_pred CeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCccCHHHcCCCCCCCEEEEE
Confidence 345677888898 89999999999999999999999997654 33544 3322 7778888887766555544433
No 281
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=73.07 E-value=14 Score=34.18 Aligned_cols=70 Identities=16% Similarity=0.264 Sum_probs=51.2
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEe---CCcc--cCCCccccccccCCCCeEEEEE
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIF---AGKQ--LEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~---~g~~--L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
+.+.|..++| ++.+.++++.|+.+|-+.|+++.|+.... .-|.+ +|.. |+..+++.+.+++.+....+..
T Consensus 2 i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccCHHhhccCCCCCEEEEE
Confidence 4566777888 78899999999999999999999996654 34554 2322 6778888887666555554433
No 282
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=72.77 E-value=15 Score=28.86 Aligned_cols=65 Identities=14% Similarity=0.137 Sum_probs=52.0
Q ss_pred EEEEEecCCccHHHHHHHHhhh--------cCCCCCCeEEEEcCeecC--CCCcccccCCCCCCEEEEEEecCCC
Q 012736 392 TITLEVESSDTIDNVKAKIQDK--------EGIPPDQQRLIFAGKQLE--DGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~--------~gip~~~q~l~~~g~~L~--d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.+.+-|+|.++.++|-+.+-.- ..|+-+.-.|..+|++.. .+++|++-|+..-|.|.+...-+-|
T Consensus 39 p~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~TPgL~G 113 (119)
T 3u52_E 39 PFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVTTPGLKG 113 (119)
T ss_dssp CEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEECTTCCC
T ss_pred ceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEeCCCcCc
Confidence 5889999999999998776543 356666668999999996 4579999999999999887664433
No 283
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=71.76 E-value=19 Score=26.90 Aligned_cols=48 Identities=10% Similarity=0.192 Sum_probs=37.5
Q ss_pred cEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCC-eEEEecCc
Q 012736 76 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFAGK 124 (457)
Q Consensus 76 ~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~L~~~g~ 124 (457)
.|.|.+. .+|..+.+.++++.+..+|.+++.+..+++..+ -.+.|...
T Consensus 6 ~vkvK~~-~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DE 54 (89)
T 1vd2_A 6 QVRVKAY-YRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDE 54 (89)
T ss_dssp CEEEEEE-SSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCS
T ss_pred eEEEEEE-eCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECC
Confidence 4555553 557889999999999999999999999987644 56666644
No 284
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=70.48 E-value=33 Score=26.85 Aligned_cols=75 Identities=17% Similarity=0.189 Sum_probs=46.0
Q ss_pred ceeeEEEcC------CC--CEEEEEecC---CccHHHHHHHHhhhc-CCC---------CC-CeEEEEcCeecCCCCcc-
Q 012736 380 GMQIFVKTL------TG--KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PD-QQRLIFAGKQLEDGRTL- 436 (457)
Q Consensus 380 ~~~i~v~~~------~g--~~~~l~v~~---~~tV~~lK~~i~~~~-gip---------~~-~q~l~~~g~~L~d~~tL- 436 (457)
+|+|.|+.. .| +.+.++++. ..||.+|...+++.+ +.. .. ...++-||+..+ .|
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~---~l~ 87 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE---LLG 87 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH---HHC
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee---ccC
Confidence 366666643 23 366788884 369999999999886 111 00 122333443211 11
Q ss_pred -cccCCCCCCEEEEEEecCCCC
Q 012736 437 -ADYNIQKESTLHLVLRLRGGF 457 (457)
Q Consensus 437 -~~~~i~~~~~i~l~~r~~GG~ 457 (457)
.++-+++||.|.+.-.+-||.
T Consensus 88 gldt~L~dGDeV~iip~vaGG~ 109 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTLHGGS 109 (114)
T ss_dssp TTTCBCCSSEEEEEEECSCCCC
T ss_pred CcCcCCCCCCEEEEeCCCCCCC
Confidence 356788899999988888883
No 285
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.78 E-value=16 Score=37.46 Aligned_cols=71 Identities=14% Similarity=0.266 Sum_probs=52.2
Q ss_pred CeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeC---Cc--ccCCCccccccccCCCCeEEEEE
Q 012736 228 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 228 ~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~---g~--~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.+.+.|..++| ++.+.++++.|+.+|-..|+.+.||.... .-|.+. |. -|+.++++.+.++..+....|..
T Consensus 4 ~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~~~~~L~F 80 (575)
T 2i1j_A 4 SMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKF 80 (575)
T ss_dssp EEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCCSSEEEEE
T ss_pred eEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhccccHHHhcccCCCCeEEEE
Confidence 45667778888 78899999999999999999999996554 445552 21 26667888887766666554443
No 286
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=68.74 E-value=15 Score=34.19 Aligned_cols=75 Identities=8% Similarity=0.003 Sum_probs=53.4
Q ss_pred cCceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCC-eEEEEc---C--eecCCCCcccccCCCCCCEEEEEE
Q 012736 378 RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---G--KQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 378 ~~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-q~l~~~---g--~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
...+.+.|..++|...++.|++.+|+.||-..|++..|+.... +-|.+. | .-|+.++++.+........+++..
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~frv 94 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTFNV 94 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEEEE
Confidence 3567888999999999999999999999999999999987544 556553 2 246677777776544444555443
Q ss_pred e
Q 012736 452 R 452 (457)
Q Consensus 452 r 452 (457)
+
T Consensus 95 k 95 (296)
T 3qij_A 95 K 95 (296)
T ss_dssp S
T ss_pred E
Confidence 3
No 287
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=67.64 E-value=37 Score=25.58 Aligned_cols=65 Identities=15% Similarity=0.250 Sum_probs=40.7
Q ss_pred CEEEEEec--CCccHHHHHHHHhhhcC-CCCC------------CeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCC
Q 012736 391 KTITLEVE--SSDTIDNVKAKIQDKEG-IPPD------------QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 455 (457)
Q Consensus 391 ~~~~l~v~--~~~tV~~lK~~i~~~~g-ip~~------------~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~G 455 (457)
+...++++ +..||.+|...+.++.. ..+. ...+.-||+..+-... .++-+++|+.|.+.-..-|
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~-~d~~L~dgDeVa~~Ppv~G 98 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGE-KDYILEDGDIISFTSTLHG 98 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTG-GGCBCCTTCEEEEEECTTC
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCC-CCcCcCCCCEEEEECCCCC
Confidence 35666776 67899999999998763 1110 1123445553220000 2456888999999888888
Q ss_pred C
Q 012736 456 G 456 (457)
Q Consensus 456 G 456 (457)
|
T Consensus 99 G 99 (99)
T 2qjl_A 99 G 99 (99)
T ss_dssp C
T ss_pred C
Confidence 7
No 288
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=67.20 E-value=17 Score=37.14 Aligned_cols=65 Identities=28% Similarity=0.459 Sum_probs=45.6
Q ss_pred CcEEEEEecccccHHHHHHHHhhh--hCCCCc------cceEee----ccE-EccC---------C----Cccccccccc
Q 012736 10 GKTITLEVESSDTIDNVKAKIQDK--EGIPPD------QQRLIF----AGK-QLED---------G----RTLADYNIQK 63 (457)
Q Consensus 10 g~~~~~~v~~~dtv~~ik~ki~~~--~~ip~~------~q~l~~----~g~-~L~~---------~----~tl~~y~i~~ 63 (457)
...+++.|-..|||..+|+||-+. .|.|.+ ...|-| .|+ .|.| + .||++|+|.+
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 367888888999999999999664 566654 334444 233 2433 1 5899999999
Q ss_pred ccceeEEEEec
Q 012736 64 ESTLHLVLRLR 74 (457)
Q Consensus 64 ~sti~l~~~~~ 74 (457)
|+++-|+.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999987643
No 289
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=66.58 E-value=13 Score=28.45 Aligned_cols=59 Identities=10% Similarity=0.264 Sum_probs=41.3
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc----Ce--------ecCC------CCcccccCCCCCCEEEEE
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA----GK--------QLED------GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~----g~--------~L~d------~~tL~~~~i~~~~~i~l~ 450 (457)
...++|+++.|..+|.+.+++.-.+....=.|... |+ .|+. +++|.+.|+.+|+.|+|+
T Consensus 6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~Vt 82 (98)
T 1y8x_B 6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVA 82 (98)
T ss_dssp CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEE
T ss_pred cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEE
Confidence 45789999999999999999954332222223333 33 3332 367999999999999886
No 290
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=64.94 E-value=15 Score=26.99 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=33.8
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI 424 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~ 424 (457)
..|+|.+-.. +..+.+.|+++.+..+|+.+|..+..+. .+.++
T Consensus 11 ~~~KVK~yy~-DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 11 KTTKIKFYYK-DDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp CCEEEEECBT-TCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred CceEEEEEec-CcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 3566666554 4589999999999999999999999883 44443
No 291
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=64.09 E-value=40 Score=24.64 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=49.6
Q ss_pred EEEEEecCCccHHHHHHHHhhhc-C--C---CCCCeEEEEcC--eecCCCCcccccCCCCCCEEEEEEe
Q 012736 392 TITLEVESSDTIDNVKAKIQDKE-G--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-g--i---p~~~q~l~~~g--~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
...+.|+..+|+.++=++++... | + |-.-.+..++| +.+..+.|+++.||.+-+.|.+...
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~~ 82 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIFM 82 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEEc
Confidence 45678999999999999988764 3 3 22245778898 8999999999999999999988754
No 292
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=63.66 E-value=15 Score=25.80 Aligned_cols=61 Identities=13% Similarity=0.130 Sum_probs=38.5
Q ss_pred CeEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCcccccccccccceeEE
Q 012736 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70 (457)
Q Consensus 1 ~~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y~i~~~sti~l~ 70 (457)
|.|.|..++|+. .++....|+.++-..+....+-. .--...+|+..+-+ +.+.+++++.++
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~~~--~vaa~vNg~lvdl~-----~~L~~~~~Veiv 61 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLGDH--CIGAKVNHKLVPLS-----YVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHHHT--EEEEEETTEECCTT-----CBCCSSSBEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccccc--eEEEEECCEEeCCC-----cCcCCCCEEEEE
Confidence 889999999987 46677899999988885432111 11123577765543 444455665554
No 293
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=62.78 E-value=17 Score=27.87 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=50.0
Q ss_pred ceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-------cCeecCCCCc----ccccCCCCCCEEE
Q 012736 380 GMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-------AGKQLEDGRT----LADYNIQKESTLH 448 (457)
Q Consensus 380 ~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-------~g~~L~d~~t----L~~~~i~~~~~i~ 448 (457)
+.-|.|-..+|...++.|++++|+.++-+.++.+.+...+.-.-++ --+.++|... ++...+.....+.
T Consensus 9 k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~ 88 (100)
T 1wgr_A 9 PHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFV 88 (100)
T ss_dssp CEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEE
T ss_pred CEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEE
Confidence 3445666688999999999999999999999999987755543222 2356778764 4445555555554
Q ss_pred EE
Q 012736 449 LV 450 (457)
Q Consensus 449 l~ 450 (457)
..
T Consensus 89 F~ 90 (100)
T 1wgr_A 89 FR 90 (100)
T ss_dssp EC
T ss_pred Ee
Confidence 43
No 294
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=62.41 E-value=26 Score=24.77 Aligned_cols=55 Identities=11% Similarity=0.308 Sum_probs=36.1
Q ss_pred eeecCCchHHHHHHHHhhhhCCCC--CceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 167 LEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 167 ~~v~~~~tV~~lK~~i~~~~gip~--~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
+++ ...||.+|.+.+..+.++.. ..-.+.-+|+...+ .++-+++|+.|.++....
T Consensus 16 ~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~----~~~~l~~gDeV~i~Ppvs 72 (74)
T 3rpf_C 16 FFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDN----LNTPLKDGDVISLLPPVC 72 (74)
T ss_dssp EEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECC----TTCCCCTTCEEEEECCBC
T ss_pred Eee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCC----CCcCCCCCCEEEEECCCC
Confidence 555 56899999999986543322 33455566766432 356788999998775433
No 295
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=60.82 E-value=44 Score=24.41 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=40.7
Q ss_pred ceEEeeecCCchHHHHHHHHhhhhC-C-----C-----CCceEEEECCeecCCCCCccccCcCcCcEEEEEEEec
Q 012736 163 KTITLEVESSDTIDNVKAKIQDKEG-I-----P-----PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLR 226 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~g-i-----p-----~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~ 226 (457)
....++++...||.+|.+.+..+.. + . .....+.-+|+.... ++-+++|+.|.++....
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-----~~~l~~gDeV~i~Ppv~ 87 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL-----GEATAAGDELALFPPVS 87 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT-----TSBCCTTCEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC-----CcccCCCCEEEEECCCC
Confidence 5667888888999999999977642 1 1 012456677776654 56688899998775433
No 296
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=60.62 E-value=29 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=38.0
Q ss_pred cCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEeeccEE
Q 012736 7 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQ 49 (457)
Q Consensus 7 ~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~ 49 (457)
..+-....+.+.+.+|+.++++++++..+++++.|.|++.+..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~ 360 (396)
T 4eut_A 318 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 360 (396)
T ss_dssp TTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSE
T ss_pred eccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCC
Confidence 3455677889999999999999999999999999999999843
No 297
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=60.09 E-value=32 Score=25.46 Aligned_cols=65 Identities=11% Similarity=0.151 Sum_probs=41.9
Q ss_pred cceeeeEeeccCceEEeeecCC-chHHHHHHHHhhhhCCCCCceEEEECCeecCCCCCccccCcCcCcEEEEEEEe
Q 012736 151 GGMQIFVKTLTGKTITLEVESS-DTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 225 (457)
Q Consensus 151 ~~~~i~v~~~~g~~~~~~v~~~-~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~ 225 (457)
..|.|.| +|+. +++... .||.+|.+.+ ++++....+..+|+..... ...++-+++|+.|.++...
T Consensus 19 ~~M~I~v---NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~~-~~~~~~L~dGD~Vei~~~V 84 (87)
T 1tyg_B 19 GRHMLQL---NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGKE-RYHEVELCDRDVIEIVHFV 84 (87)
T ss_dssp ---CEEE---TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECGG-GTTTSBCCSSSEEEEEEEC
T ss_pred cceEEEE---CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECChh-hcCCcCCCCCCEEEEEccc
Confidence 3455555 3554 445666 8999998876 5666666677888876432 3345678999999887543
No 298
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=59.76 E-value=7.7 Score=40.73 Aligned_cols=51 Identities=31% Similarity=0.602 Sum_probs=42.4
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc-CeecCCCCccccc
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADY 439 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-g~~L~d~~tL~~~ 439 (457)
..+.+.+.+.+++|+.+++..|++.+|||++.|.+++. |..+++.....+|
T Consensus 320 ~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 320 SGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred ccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34556789999999999999999999999999999885 5566666666665
No 299
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=58.53 E-value=51 Score=24.09 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=49.8
Q ss_pred EEEEEecCCccHHHHHHHHhhhc-C--CC--CCCeEEEEcCee--cCCCCcccccCCCCCCEEEEEE
Q 012736 392 TITLEVESSDTIDNVKAKIQDKE-G--IP--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~-g--ip--~~~q~l~~~g~~--L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
...+.|+..+|+.++=++++... | ++ |.-.+..++|.. |.++.|+++.||++-+.|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 45678999999999999988764 3 22 235688899998 9999999999999999998875
No 300
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=58.07 E-value=22 Score=32.89 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=49.8
Q ss_pred CCeeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCCCC-eEEEeC---Cc--ccCCCccccccccCCCCeEEE
Q 012736 227 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-QRLIFA---GK--QLEDGRTLADYNIQKESTLHL 297 (457)
Q Consensus 227 ~~~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~~~-q~L~~~---g~--~L~d~~tl~~~~i~~~~tl~l 297 (457)
..+.+.|..++|...++.+++..|+.+|-..|+++.||.... .-|.+. |. -|+..+++.+.......++++
T Consensus 16 ~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~~~~~l~f 92 (296)
T 3qij_A 16 FQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKEIKKQVRGVPWNFTF 92 (296)
T ss_dssp -CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSBHHHHC---CCEEEE
T ss_pred ceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchhHHHhcCCCCcEEEE
Confidence 346778888999999999999999999999999999986554 445553 21 266677776654322234443
No 301
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=57.67 E-value=25 Score=26.87 Aligned_cols=40 Identities=15% Similarity=0.101 Sum_probs=33.9
Q ss_pred CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCC
Q 012736 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP 114 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~ 114 (457)
++.-|.|-..+|....+.|++.+|++++-+.+..+.+...
T Consensus 8 ~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~ 47 (100)
T 1wgr_A 8 RPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALS 47 (100)
T ss_dssp SCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCC
T ss_pred CCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCC
Confidence 4455667678999999999999999999999999887653
No 302
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=55.48 E-value=38 Score=24.90 Aligned_cols=38 Identities=13% Similarity=0.168 Sum_probs=31.6
Q ss_pred CcEEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCC
Q 012736 75 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIP 113 (457)
Q Consensus 75 ~~~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (457)
+.|.|.+- ..+..+.+.|+++.+..+|+.+|.++..+.
T Consensus 11 ~~~KVK~y-y~DDIiAIrvP~di~~~~L~dKi~~RLk~~ 48 (85)
T 1ip9_A 11 KTTKIKFY-YKDDIFALMLKGDTTYKELRSKIAPRIDTD 48 (85)
T ss_dssp CCEEEEEC-BTTCCEEEEECSCCCHHHHHHHHHHHHTSS
T ss_pred CceEEEEE-ecCcEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45666663 556789999999999999999999998883
No 303
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=54.85 E-value=20 Score=34.44 Aligned_cols=52 Identities=21% Similarity=0.328 Sum_probs=40.8
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeec--CCCCcccccC
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL--EDGRTLADYN 440 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L--~d~~tL~~~~ 440 (457)
+-....+.+++..|+.++++.+++.++++++.|.+.+.+..+ +....-..|.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 320 QMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp TTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSC
T ss_pred cceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCC
Confidence 344677888999999999999999999999999999988433 3444444443
No 304
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=53.71 E-value=38 Score=23.54 Aligned_cols=62 Identities=11% Similarity=0.097 Sum_probs=39.4
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~ 451 (457)
|.+.|..++|+. .+++.+.|+.++-..+.... +....-...+|+..+-+ +-+++|+.|.+..
T Consensus 1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl~-----~~L~~~~~Veivt 62 (73)
T 2kmm_A 1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPLS-----YVLNSGDQVEVLS 62 (73)
T ss_dssp CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCTT-----CBCCSSSBEEEEE
T ss_pred CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCCC-----cCcCCCCEEEEEE
Confidence 567777777865 56778899999988874332 12223334578766544 3344577777654
No 305
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=53.21 E-value=25 Score=25.15 Aligned_cols=54 Identities=4% Similarity=0.095 Sum_probs=37.1
Q ss_pred eEEEEeecCccHHHHHHHHhhhcC-----CCCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012736 240 TITLEVESSDTIDNVKAKIQDKEG-----IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 240 ~~~~~v~~~~tV~~lK~~I~~~~~-----ip~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
..+++ .+..||.+|.+.+..+++ ++.....+..||+... .+..+++|+.+.++.
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~-----~~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVS-----FDHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECC-----TTCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECC-----CCCCCCCCCEEEEeC
Confidence 45555 567799999999886643 3333455667787654 355789999987764
No 306
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=52.84 E-value=33 Score=27.33 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=39.4
Q ss_pred EEEecC----CccHHHHHHHHhhhcCCCCCCeEEEE--cCeecC-----C--CCcccccCCCCCCEEEEE
Q 012736 394 TLEVES----SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLV 450 (457)
Q Consensus 394 ~l~v~~----~~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~-----d--~~tL~~~~i~~~~~i~l~ 450 (457)
.+.|++ ..|..+|-..+..++|.+. ...+.- +.+.|- | +++|++.|+++|+.|.+.
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~ 77 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFS 77 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEE
Confidence 355554 4699999888988888764 555542 234442 2 369999999999998775
No 307
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=51.33 E-value=23 Score=26.99 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=31.7
Q ss_pred cCcEEEEEEccC-------CcEEEEEEeCCCCHHHHHHHHhhhhCCC
Q 012736 74 RGGMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIP 113 (457)
Q Consensus 74 ~~~~~i~vk~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip 113 (457)
.+.+.|.|...+ +..+.+-|+++.+..+|..+|.++.+++
T Consensus 3 ~~sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~ 49 (98)
T 1q1o_A 3 LGSILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNT 49 (98)
T ss_dssp SSCEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCC
Confidence 345667776442 5578999999999999999999998765
No 308
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=46.63 E-value=76 Score=24.33 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=50.5
Q ss_pred eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEE---ECCee--cCCCCCccccCcCcCcEEEEEEE
Q 012736 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~--L~d~~tL~~y~i~~~~~i~l~~~ 224 (457)
+...|-..+...+++.+....|+.+++..+.++.+...+.+.|+ ++|.. |.++..--.-.+.-+..|++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33345556777888899999999999999999999887778876 56753 45544433335556666666554
No 309
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=46.56 E-value=14 Score=28.40 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=53.1
Q ss_pred eEEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCcc--ceEeec---cEEccCCCcccccccccccceeEEEE
Q 012736 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ--QRLIFA---GKQLEDGRTLADYNIQKESTLHLVLR 72 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~--q~l~~~---g~~L~~~~tl~~y~i~~~sti~l~~~ 72 (457)
.|+|..++ ...+++|...--|..+..|+-++.+++.+. --|.+- -..|.-..||..|+|+..+.+++...
T Consensus 28 ~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp~ 102 (112)
T 2lgx_A 28 SVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTPQ 102 (112)
T ss_dssp ECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC-
T ss_pred EEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecCC
Confidence 35666666 788899998899999999999998887643 234442 23466778999999999999887543
No 310
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=45.89 E-value=19 Score=28.03 Aligned_cols=76 Identities=16% Similarity=0.281 Sum_probs=42.0
Q ss_pred CeeEEEEccC------CceEEEEeec----CccHHHHHHHHhhhcCCCCCCeEEE-eCC--c------ccCCCccc----
Q 012736 228 GMQIFVKTLT------GKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRTL---- 284 (457)
Q Consensus 228 ~~~i~v~~~~------g~~~~~~v~~----~~tV~~lK~~I~~~~~ip~~~q~L~-~~g--~------~L~d~~tl---- 284 (457)
.|.|.|+... |+...+++.. ..||++|-+.+.+++. ...-.|. -+| . .|-|++..
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~~--~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNYV--KERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTTC--CSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHcc--ccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 3455555432 4555677663 2499999999888752 1111111 112 1 12222222
Q ss_pred -cccccCCCCeEEEEEeecCce
Q 012736 285 -ADYNIQKESTLHLVLRLRGGM 305 (457)
Q Consensus 285 -~~~~i~~~~tl~l~~~~~~~~ 305 (457)
.+|.+++||.|.+++..+++.
T Consensus 82 gldt~L~dgD~V~fistlhg~~ 103 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGGL 103 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC-
T ss_pred CcccCCCCcCEEEEeCCCcccc
Confidence 457899999988876665553
No 311
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=45.25 E-value=25 Score=25.05 Aligned_cols=57 Identities=5% Similarity=0.156 Sum_probs=39.9
Q ss_pred cCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012736 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
.||+.+.+ +..|+.+|-+. +++++..--...+|..++.+. +.+.-++.|+.+.+...
T Consensus 5 vNG~~~e~---~~~Tl~~LL~~----l~~~~~~vAV~vNg~iVpr~~-~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 5 INGEQREV---QSASVAALMTE----LDCTGGHFAVALNYDVVPRGK-WDETPVTAGDEIEILTP 61 (73)
T ss_dssp ETTEEECC---CCSBHHHHHHH----TTCCSSSCEEEESSSEECHHH-HTTCBCCTTCEEEEECC
T ss_pred ECCEEEEc---CCCcHHHHHHH----cCCCCCcEEEEECCEECChHH-cCcccCCCCCEEEEEcc
Confidence 56776554 67899999664 467766555567887775433 56777888999888743
No 312
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=44.16 E-value=42 Score=22.91 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=38.7
Q ss_pred ecCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEE
Q 012736 311 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 376 (457)
Q Consensus 311 ~~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~ 376 (457)
..||+.+. + +..|+.+|.+.+. +++..-....+|...+.+ .+.+..++.++.+.+...
T Consensus 3 ~vNg~~~~--~-~~~tv~~ll~~l~----~~~~~v~vavN~~~v~~~-~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 3 WLNGEPRP--L-EGKTLKEVLEEMG----VELKGVAVLLNEEAFLGL-EVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EETTEEEC--C-TTCCHHHHHHHHT----BCGGGEEEEETTEEEEGG-GCCCCCCCTTCEEEEEEC
T ss_pred EECCEEEE--c-CCCcHHHHHHHcC----CCCCcEEEEECCEECCcc-ccCCcCCCCCCEEEEEee
Confidence 35777665 4 6789999988774 444443444777766543 245667888898888753
No 313
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=43.88 E-value=21 Score=37.39 Aligned_cols=52 Identities=29% Similarity=0.569 Sum_probs=40.7
Q ss_pred cCCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCceEEecCe-eccCCCccccc
Q 012736 312 LTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGK-QLEDGRTLADY 363 (457)
Q Consensus 312 ~~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~-~L~d~~~l~~~ 363 (457)
...+.+++.+.++.|+.+++..|++.||||+..|.+.+.++ .+++......|
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~ 371 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQY 371 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhh
Confidence 34555678899999999999999999999999999996544 45555444444
No 314
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=42.99 E-value=72 Score=23.53 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=34.3
Q ss_pred eeEEEcCCCC-EEEEEecC-CccHHHHHHHHhhhcCCCCCCeEE-EEc---CeecCCCC
Q 012736 382 QIFVKTLTGK-TITLEVES-SDTIDNVKAKIQDKEGIPPDQQRL-IFA---GKQLEDGR 434 (457)
Q Consensus 382 ~i~v~~~~g~-~~~l~v~~-~~tV~~lK~~i~~~~gip~~~q~l-~~~---g~~L~d~~ 434 (457)
.|+-+..+.+ ...+.++. +.+|.|||..|..+.++-....-| +++ |.+..|+.
T Consensus 8 ~V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i~na~T~eeY~Dd~ 66 (86)
T 2c7h_A 8 CVHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQITNAQTKEEYTDDN 66 (86)
T ss_dssp EEEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEEEESSSCCEECSTT
T ss_pred EEEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEEeCCCCCCccCCCc
Confidence 4555655443 45677774 559999999999998876555554 343 33444544
No 315
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=42.31 E-value=63 Score=23.33 Aligned_cols=64 Identities=20% Similarity=0.261 Sum_probs=54.8
Q ss_pred EEEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 393 ITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 393 ~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
..+.|++......+-...++.+.+|+..--++- +|.-++..+|-...-++.||.|.+.-|-|=|
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP~QtAGnvFlKhGseLrlIPRDRVG 90 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINPAQTAGNVFLKHGSELRIIPRDRVG 90 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCCSSBHHHHHHHTCSEEEEEECCSSC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccChhhccchhhhhcCceeEeccccccc
Confidence 467899999999999999999999998876554 6888999999888888999999999887655
No 316
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=41.79 E-value=67 Score=24.65 Aligned_cols=72 Identities=10% Similarity=0.211 Sum_probs=47.9
Q ss_pred EEEEEEccCCcEEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE---ecCcc--ccccCcccccccccCCcceeEEE
Q 012736 77 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI---FAGKQ--LEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 77 ~~i~vk~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~---~~g~~--L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
+...|-..+..-+++.+....|+.+++..++++.+...+.+.|. ++|.. |+++..--.-.+.-++.|++..+
T Consensus 10 i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~NgRLfvc~k 86 (104)
T 1wgy_A 10 IFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEASGRIYVYRK 86 (104)
T ss_dssp CCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCSSCEEEEEEC
T ss_pred eEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccccceEEEeeh
Confidence 33344445666788889999999999999999999877778776 67754 34443322233444555555543
No 317
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=41.71 E-value=28 Score=26.50 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=34.9
Q ss_pred ceeeEEEcCC-------CCEEEEEecCCccHHHHHHHHhhhcCCCCCC-----eEEEEc
Q 012736 380 GMQIFVKTLT-------GKTITLEVESSDTIDNVKAKIQDKEGIPPDQ-----QRLIFA 426 (457)
Q Consensus 380 ~~~i~v~~~~-------g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~-----q~l~~~ 426 (457)
.+.|.+...+ +..+.+-|+++.+..+|..+|.++.+++... .+|-|.
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYk 63 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQ 63 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEE
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEE
Confidence 3556666542 5579999999999999999999999876322 356664
No 318
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=41.12 E-value=1.1e+02 Score=22.83 Aligned_cols=24 Identities=8% Similarity=0.223 Sum_probs=19.0
Q ss_pred cEEEEEEe--CCCCHHHHHHHHhhhh
Q 012736 87 KTITLEVE--SSDTIDNVKAKIQDKE 110 (457)
Q Consensus 87 ~~~~l~v~--~~~tV~~lK~~i~~~~ 110 (457)
+...+++. ...||.+|.+.+.++.
T Consensus 20 ~~~~~~l~~~~~~Tv~~L~~~L~~~~ 45 (99)
T 2qjl_A 20 RVHKIKMDKEDPVTVGDLIDHIVSTM 45 (99)
T ss_dssp CEEEEEECSCSCCBHHHHHHHHHHHT
T ss_pred cEEEEecCCCCCCcHHHHHHHHHHHC
Confidence 45677776 6789999999998765
No 319
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=41.07 E-value=1e+02 Score=22.53 Aligned_cols=60 Identities=10% Similarity=0.136 Sum_probs=37.7
Q ss_pred EeeecCCchHHHHHHHHhhhhCC------C-------CCceEEEECCeecCCCCCccccCcCcCcEEEEEEEecC
Q 012736 166 TLEVESSDTIDNVKAKIQDKEGI------P-------PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 227 (457)
Q Consensus 166 ~~~v~~~~tV~~lK~~i~~~~gi------p-------~~~q~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~~~~~ 227 (457)
.+++ ...||.+|.+.+..++.- . .....+.-+|+......- .++-+++|++|.++....+
T Consensus 20 ~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~~~-~~~~L~~gDeV~i~Ppv~G 92 (93)
T 3dwg_C 20 SVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFSGG-LATAIADGDSVTILPAVAG 92 (93)
T ss_dssp EEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGTTG-GGCBCCTTCEEEEEECCTT
T ss_pred EEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCcCC-CCcCCCCCCEEEEECCCCC
Confidence 4554 467999999999876520 1 012455667776653211 3567899999988765443
No 320
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=40.06 E-value=1.1e+02 Score=23.71 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=42.1
Q ss_pred EEEEccCCceEEEEeecCccHHHHHHHHhhhcC--------CCCCCeEEEe-C--Cc--cc-CCCccccccccC
Q 012736 231 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG--------IPPDQQRLIF-A--GK--QL-EDGRTLADYNIQ 290 (457)
Q Consensus 231 i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~--------ip~~~q~L~~-~--g~--~L-~d~~tl~~~~i~ 290 (457)
+..-.++|-.+.+.+..+.|+.++|+.+.+..+ -.++.|.+.. + ++ ++ ++++-|.+...-
T Consensus 22 v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf 95 (108)
T 2v1y_A 22 VECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 95 (108)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS
T ss_pred EEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc
Confidence 334456777888999999999999999887633 4677787776 2 22 24 556777765544
No 321
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=39.15 E-value=19 Score=28.01 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=44.3
Q ss_pred ceeeEEEcC------CCCEEEEEecC----CccHHHHHHHHhhhcCCCCCCeEEE-EcC--e------ecCCCCc---c-
Q 012736 380 GMQIFVKTL------TGKTITLEVES----SDTIDNVKAKIQDKEGIPPDQQRLI-FAG--K------QLEDGRT---L- 436 (457)
Q Consensus 380 ~~~i~v~~~------~g~~~~l~v~~----~~tV~~lK~~i~~~~gip~~~q~l~-~~g--~------~L~d~~t---L- 436 (457)
+|+|.|+.. -|+.+.++++. ..||.+|-..+++.. |...-.|+ -+| . .|-|+.- |
T Consensus 4 ~m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e~l~ 81 (110)
T 2k9x_A 4 HNHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAEVVG 81 (110)
T ss_dssp SSCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHHHHT
T ss_pred ccEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeeeccC
Confidence 355666542 34556777773 249999999998875 22222222 112 1 2222221 1
Q ss_pred -cccCCCCCCEEEEEEecCCC
Q 012736 437 -ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 437 -~~~~i~~~~~i~l~~r~~GG 456 (457)
.+|-+++||.|.+...+-||
T Consensus 82 gldt~L~dgD~V~fistlhg~ 102 (110)
T 2k9x_A 82 GMDYVLNDGDTVEFISTLHGG 102 (110)
T ss_dssp SSCCCCCSSCEEEEEECCCCC
T ss_pred CcccCCCCcCEEEEeCCCccc
Confidence 35778999999998878777
No 322
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=38.95 E-value=1.3e+02 Score=23.23 Aligned_cols=76 Identities=16% Similarity=0.138 Sum_probs=43.4
Q ss_pred cEEEEEEccC------C--cEEEEEEeC---CCCHHHHHHHHhhhh-CCC---------CC-CeEEEecCccccccCccc
Q 012736 76 GMQIFVKTLT------G--KTITLEVES---SDTIDNVKAKIQDKE-GIP---------PD-QQRLIFAGKQLEDGRTLA 133 (457)
Q Consensus 76 ~~~i~vk~~~------g--~~~~l~v~~---~~tV~~lK~~i~~~~-gip---------~~-~q~L~~~g~~L~d~~tl~ 133 (457)
.|.|+|+... | +.+.++++. ..||.+|-+.+.+.. +.. .. ...++.||+..+-- -=.
T Consensus 11 ~M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l-~gl 89 (114)
T 1wgk_A 11 PLCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELL-GEL 89 (114)
T ss_dssp CEEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHH-CTT
T ss_pred CcEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeecc-CCc
Confidence 3777777542 3 366788873 369999999998765 110 00 12233344311100 013
Q ss_pred ccccccCCcceeEEEeecc
Q 012736 134 DYNIQKESTLHLVLRLRGG 152 (457)
Q Consensus 134 ~y~i~~~s~i~l~~~~~~~ 152 (457)
+|-+++|+.|.+.....||
T Consensus 90 dt~L~dGDeV~iip~vaGG 108 (114)
T 1wgk_A 90 DYQLQDQDSILFISTLHGG 108 (114)
T ss_dssp TCBCCSSEEEEEEECSCCC
T ss_pred CcCCCCCCEEEEeCCCCCC
Confidence 5778888888877666665
No 323
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=38.68 E-value=58 Score=24.49 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=45.7
Q ss_pred ceeeEEEcCC------CCEEEEEecCCccHHHHHHHHhhhcC-CCC---------CCe-------EEEEcCeecCCCCcc
Q 012736 380 GMQIFVKTLT------GKTITLEVESSDTIDNVKAKIQDKEG-IPP---------DQQ-------RLIFAGKQLEDGRTL 436 (457)
Q Consensus 380 ~~~i~v~~~~------g~~~~l~v~~~~tV~~lK~~i~~~~g-ip~---------~~q-------~l~~~g~~L~d~~tL 436 (457)
+|+|.|+... |. ..++++ ..||.+|...+..... +.. ... .+..||+...... =
T Consensus 3 mm~v~V~~fa~lr~~~g~-~~~~l~-~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~~-~ 79 (99)
T 2l52_A 3 MAEVKVKLFANLREAAGT-PELPLS-GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHLE-G 79 (99)
T ss_dssp CCEEEEEECTHHHHHHSS-SEEEEE-CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGTT-S
T ss_pred ceEEEEEEeHHHHHHhCC-CeEEEe-CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEccccC-C
Confidence 3566666432 32 233444 6899999999987741 111 022 6777887664221 1
Q ss_pred cccCCCCCCEEEEEEecCCC
Q 012736 437 ADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 437 ~~~~i~~~~~i~l~~r~~GG 456 (457)
.+.-+++|+.|.+.-..-||
T Consensus 80 ~~~~L~~gD~V~i~ppv~GG 99 (99)
T 2l52_A 80 LETLLKDSDEIGILPPVSGG 99 (99)
T ss_dssp TTSCCCTTEEEEEECCCSCC
T ss_pred CCCCCCCCCEEEEECCCCCC
Confidence 23457889999998888777
No 324
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=37.20 E-value=56 Score=22.97 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=37.8
Q ss_pred ceEEeeecCCchHHHHHHHHhhhhCCCCCce--EEEECCeecCCCCCccccCcCcCcEEEEEE
Q 012736 163 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQ--RLIFAGKQLEDGRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q--~L~~~g~~L~d~~tL~~y~i~~~~~i~l~~ 223 (457)
....+++....||.+|.+.+...+.- .... .+..+|+.... +.-+++|+.|.++.
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p~-~~~v~~~v~vNg~~v~~-----~~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYPQ-INNKKFQVAVNEEFVQK-----SDFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCGG-GTTCCCEEEETTEEECT-----TSEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCcc-hhcceEEEEECCEECCC-----CCCcCCCCEEEEEC
Confidence 34567777888999999998765310 1222 56778887754 35788899887754
No 325
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=36.86 E-value=1e+02 Score=24.69 Aligned_cols=43 Identities=9% Similarity=0.189 Sum_probs=33.9
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEE-eCCccc-CCCccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~-~~g~~L-~d~~tl 284 (457)
.+-|.++.||+++...|.++.++++++-.++ |.+..+ ..+.++
T Consensus 56 KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m 100 (130)
T 2zjd_A 56 KFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPI 100 (130)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBH
T ss_pred EEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchH
Confidence 4678899999999999999999999987767 766554 334444
No 326
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=35.16 E-value=68 Score=29.45 Aligned_cols=68 Identities=18% Similarity=0.244 Sum_probs=46.2
Q ss_pred eEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCcccc----cCCCCCCEEEEE
Q 012736 383 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTLAD----YNIQKESTLHLV 450 (457)
Q Consensus 383 i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~tL~~----~~i~~~~~i~l~ 450 (457)
+.|-..+|...++.|++++|+.||-..++.+.+.+.+.-..++. -++|+|...+.+ ........+.+.
T Consensus 34 vkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~~l~lER~ledhE~V~dvl~~W~~ds~n~l~f~ 112 (281)
T 4gmv_A 34 IRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIFM 112 (281)
T ss_dssp EEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEGGGTEEEECCTTSBHHHHHTTSCTTCCCEEEEE
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcCCccceeccccchhHHHHHHhcccCCCceEEEE
Confidence 44444568899999999999999999999888876555444442 357777765443 344445554443
No 327
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=34.75 E-value=70 Score=32.43 Aligned_cols=48 Identities=17% Similarity=0.099 Sum_probs=40.4
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC--CCeEEEEc
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFA 426 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~--~~q~l~~~ 426 (457)
.++.+.|..++|....+.|++.+|+.+|-..|+.+.|+.. +.+-|++.
T Consensus 215 ~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~ 264 (555)
T 3au4_A 215 QEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEY 264 (555)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEE
T ss_pred CCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEE
Confidence 3466777888999999999999999999999999999974 45666653
No 328
>1rax_A Protein (RA-domain of RAL guanosine dissociation stimulator); RAS-binding domain, ralgef, ralgds, RAS; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=34.09 E-value=92 Score=24.18 Aligned_cols=70 Identities=24% Similarity=0.367 Sum_probs=45.4
Q ss_pred eEEEEcCCCcEEE-EEecccccHHHHHHHHhhhhCCCCc---cceEeeccEEccCCCcc-------cccccccccceeEE
Q 012736 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPD---QQRLIFAGKQLEDGRTL-------ADYNIQKESTLHLV 70 (457)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~ip~~---~q~l~~~g~~L~~~~tl-------~~y~i~~~sti~l~ 70 (457)
.|.+++.+|.-+. |.+...|....+-++.-+|+++..+ ...| + +.|++++-| -.|-+.......++
T Consensus 32 RVs~d~~~gn~YKSIlltsqDktp~VI~raL~Khnl~~~~~~~y~L-~--Q~Lp~~kEL~iPd~aNVFYAm~~s~~~dFv 108 (115)
T 1rax_A 32 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYEL-L--QILSDDRKLKIPENANVFYAMNSTANYDFV 108 (115)
T ss_dssp EEEESSSSCCCCEEEEEETTCCHHHHHHHHHHHHTCTTSCSTTEEE-E--EECSSSCEEEECTTSCHHHHSCTTSCCEEE
T ss_pred EEEEecCCCcEEEEEEEecCCCcHHHHHHHHHHcCCCCCCccceEE-E--EEcCCCCeEecCCCcceEEEEcCCCCccEE
Confidence 4667777786554 8899999999999999999998743 2233 1 344443322 14555555566666
Q ss_pred EEec
Q 012736 71 LRLR 74 (457)
Q Consensus 71 ~~~~ 74 (457)
+|.+
T Consensus 109 LR~r 112 (115)
T 1rax_A 109 LKKR 112 (115)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 6654
No 329
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=33.89 E-value=58 Score=25.65 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=40.1
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCe-EEEEcCeecCCCCcccc---cCCCCCCEEEEEE
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQ-RLIFAGKQLEDGRTLAD---YNIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q-~l~~~g~~L~d~~tL~~---~~i~~~~~i~l~~ 451 (457)
-+-|+.+.||+++...|..+.++++++- -|+-++.....+.++++ +.-.++.-|++..
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kd~DGfLyv~Y 112 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQMADIYSKYKDEDGFLYMKY 112 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchHHHHHHHcCCCCCeEEEEE
Confidence 3568999999999999999999998874 44457774455566543 2222344566654
No 330
>3chb_D Cholera toxin; toxin/receptor complex, pentasaccharide; HET: GAL NGA SIA BGC MES; 1.25A {Vibrio cholerae} SCOP: b.40.2.1 PDB: 2chb_D* 1jr0_D* 1fgb_D 1eei_D* 1llr_D* 1md2_D* 1pzj_D* 1pzk_D* 1rcv_D* 1rd9_D* 1rdp_D* 1rf2_D* 1s5b_D 1s5c_D 1s5d_D* 1s5e_D* 1s5f_D* 1chp_D 1chq_D 1ct1_D* ...
Probab=33.61 E-value=44 Score=24.16 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=0.0
Q ss_pred eEEEecCCcEEEEEeeCCCcHHHHHHHhhc---------ccCCCCCCceEE-ecCe
Q 012736 307 IFVKTLTGKTITLEVESSDTIDNVKAKIQD---------KEGIPPDQQRLI-FAGK 352 (457)
Q Consensus 307 i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~---------~~~ip~~~q~l~-~~g~ 352 (457)
+.|..-+|-+|.++|+.+.-++.-|+.|+. .+++.++ +|+ |+++
T Consensus 39 viisf~ngatfqvevpgsqh~~sqk~~~ermkdtlr~ay~t~~ki~--klcvwnnk 92 (104)
T 3chb_D 39 AIITFKNGATFQVEVPGSQHIDSQKKAIERMKDTLRIAYLTEAKVE--KLCVWNNK 92 (104)
T ss_dssp EEEECTTCCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHTCCEE--EEEEETTS
T ss_pred EEEEecCCcEEEEecCcchhhhhhhhHHHHHHHHHHHHHHhccchh--heeeecCC
No 331
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=33.21 E-value=93 Score=26.06 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=42.6
Q ss_pred EEEecCCccHHHHHHHHhhhcC-C---------CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEecCCC
Q 012736 394 TLEVESSDTIDNVKAKIQDKEG-I---------PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 456 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~g-i---------p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 456 (457)
.++++. .||.+|...+..... + ......+..||+......- .+.-+++|+.|.+.-..-||
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~~~-~dt~L~dGDeVai~PpVsGG 87 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYLQG-LSTPLSPGATLDLFPPVAGG 87 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGTTG-GGCBCCTTCEEEEECSCCSE
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCcCC-CccCCCCCCEEEEECccccc
Confidence 445665 899999999987641 1 0234567788888765322 23458899999998888887
No 332
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=33.20 E-value=61 Score=25.06 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=27.0
Q ss_pred eeEEEecCCcEEEEEeeCCCcHHHHHHHhhcc
Q 012736 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDK 337 (457)
Q Consensus 306 ~i~i~~~~g~~~~l~v~~~~Tv~~lK~~I~~~ 337 (457)
.+.+=..||-.++++++.++|+.++|+.+.+.
T Consensus 21 ~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~e 52 (108)
T 2v1y_A 21 LVECLLPNGMIVTLECLREATLITIKHELFKE 52 (108)
T ss_dssp EEEEECTTSCEEEEEEETTCBHHHHHHHHHHH
T ss_pred EEEEEcCcEEEEEEEeeccccHHHHHHHHHHH
Confidence 45556778888899999999999999998765
No 333
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=32.73 E-value=57 Score=24.07 Aligned_cols=56 Identities=18% Similarity=0.215 Sum_probs=32.4
Q ss_pred EEEec-ccccHHHHHHHHhhhhCCCCccceEeeccEEccCCCccccc-----ccccccceeEEEEec
Q 012736 14 TLEVE-SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADY-----NIQKESTLHLVLRLR 74 (457)
Q Consensus 14 ~~~v~-~~dtv~~ik~ki~~~~~ip~~~q~l~~~g~~L~~~~tl~~y-----~i~~~sti~l~~~~~ 74 (457)
++.++ .+-+|.+||+.|-.+.+.-...-.|.+ .+..|-++| -|..++++-+...|.
T Consensus 21 ~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~i-----~na~T~eeY~Dd~~lIprnssViVrRvP~ 82 (86)
T 2c7h_A 21 TVTFDGLHISLCDLKKQIMGREKLKAADCDLQI-----TNAQTKEEYTDDNALIPKNSSVIVRRIPI 82 (86)
T ss_dssp EEEESSSEEEHHHHHHHHHHHHTCCTTTEEEEE-----EESSSCCEECSTTCEEETTCCEEEEEEEC
T ss_pred eEEEcCCEEEHHHHHHHHHHHhCCCCCcccEEE-----eCCCCCCccCCCceEEecCCEEEEEeccC
Confidence 34444 368999999999888776543333333 223333333 366777766554443
No 334
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=32.63 E-value=36 Score=24.56 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.7
Q ss_pred EEEEEeeCCCcHHHHHHHhhcccCCC
Q 012736 316 TITLEVESSDTIDNVKAKIQDKEGIP 341 (457)
Q Consensus 316 ~~~l~v~~~~Tv~~lK~~I~~~~~ip 341 (457)
.+++.|+++.+..+|..+|.++++++
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 57789999999999999999999875
No 335
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=32.60 E-value=95 Score=23.39 Aligned_cols=69 Identities=7% Similarity=0.042 Sum_probs=46.0
Q ss_pred ceeeEEEcC-C--CCEEEEEecCCccHHHHHHHHhhh---cCCCCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEec
Q 012736 380 GMQIFVKTL-T--GKTITLEVESSDTIDNVKAKIQDK---EGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRL 453 (457)
Q Consensus 380 ~~~i~v~~~-~--g~~~~l~v~~~~tV~~lK~~i~~~---~gip~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~ 453 (457)
.|.|.|.+. . .....++++++.||.++-....-. ..|......+-.+|+.... +.-+++||.|.+.-.+
T Consensus 12 ~~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~-----d~~L~dGDRVEIyrpl 86 (97)
T 2hj1_A 12 QINIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL-----TDVLKEGDRIEIYRPL 86 (97)
T ss_dssp EEEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT-----TCBCCTTCEEEECCCC
T ss_pred eEEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC-----CccCCCCCEEEEEecc
Confidence 345555432 2 235677899999999998887542 2455556778888888873 4446679999876543
No 336
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=32.08 E-value=72 Score=24.16 Aligned_cols=61 Identities=11% Similarity=0.245 Sum_probs=41.1
Q ss_pred ceEEeeecCCchHHHHHHHHhhhhCCCCC-----------ceEEEECC-eecCC------CCCccccCcCcCcEEEEEE
Q 012736 163 KTITLEVESSDTIDNVKAKIQDKEGIPPD-----------QQRLIFAG-KQLED------GRTLADYNIQKESTLHLVL 223 (457)
Q Consensus 163 ~~~~~~v~~~~tV~~lK~~i~~~~gip~~-----------~q~L~~~g-~~L~d------~~tL~~y~i~~~~~i~l~~ 223 (457)
....++++++.|..++-+.+.+.-.+... ...|.+.+ ..|+. +++|.+.|+.+|..|++.-
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 35578999999999999999874332222 23333332 23322 5789999999999987753
No 337
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=31.15 E-value=1.1e+02 Score=24.30 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=36.6
Q ss_pred CchHHHHHHHHhhhhCCCCCceEEEE--CCeecC-----C--CCCccccCcCcCcEEEEEEE
Q 012736 172 SDTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLE-----D--GRTLADYNIQKESTLHLVLR 224 (457)
Q Consensus 172 ~~tV~~lK~~i~~~~gip~~~q~L~~--~g~~L~-----d--~~tL~~y~i~~~~~i~l~~~ 224 (457)
..|..+|-+.++.++|.+. ...+.- ..+.|- | +++|.+.|+..|+.+.+.-.
T Consensus 19 ~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 19 KMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp HCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred ccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 4588888888888888864 333332 234442 2 58999999999999977653
No 338
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=30.95 E-value=78 Score=22.79 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred eeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCCceEEEE
Q 012736 155 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 197 (457)
Q Consensus 155 i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~ 197 (457)
+.+..++++.-.++|.++.|+.+.-.+.-++.++.++. .-+|
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEE
Confidence 45667888888999999999999999999999998854 4444
No 339
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=30.45 E-value=1.5e+02 Score=21.27 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=36.0
Q ss_pred EEeecCccHHHHHHHHhhhcC------C-----CCCCeEEEeCCcccCCCccccccccCCCCeEEEEE
Q 012736 243 LEVESSDTIDNVKAKIQDKEG------I-----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVL 299 (457)
Q Consensus 243 ~~v~~~~tV~~lK~~I~~~~~------i-----p~~~q~L~~~g~~L~d~~tl~~~~i~~~~tl~l~~ 299 (457)
.++....||.+|.+.+..+++ + .........||+...... -.+..+++|+.+.++.
T Consensus 19 ~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~-~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 19 ETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSMK-GLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGTC-SSSCBCCTTCEEEEEC
T ss_pred EEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEccccC-CCCcCCCCCCEEEEeC
Confidence 345566899999999987752 1 013345666777654221 2345689999987764
No 340
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=30.20 E-value=1.6e+02 Score=21.45 Aligned_cols=60 Identities=20% Similarity=0.311 Sum_probs=46.9
Q ss_pred EEEEEEeCCCCHHHHHHHHhhh-hC--C---CCCCeEEEecC--ccccccCcccccccccCCcceeEE
Q 012736 88 TITLEVESSDTIDNVKAKIQDK-EG--I---PPDQQRLIFAG--KQLEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~-~g--i---p~~~q~L~~~g--~~L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
...+.|+.++|+.++=++++.. .| + |..-.++.++| +.|..+.|+++-||.+-..|.+..
T Consensus 14 ~~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 14 IQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCceEEEEEE
Confidence 3567799999999999999864 34 3 22346777899 889999999999999888777654
No 341
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=30.03 E-value=81 Score=28.47 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=36.3
Q ss_pred eeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEEEEc-------CeecCCCCcc
Q 012736 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFA-------GKQLEDGRTL 436 (457)
Q Consensus 382 ~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~~-------g~~L~d~~tL 436 (457)
.|.|-..+|...++.|++++|+.||=..+..+.+++.+.-..++. -++|+|...+
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledhE~V 71 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDHELV 71 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTTSBH
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccchhH
Confidence 344445678899999999999999999999888776555544443 4577776543
No 342
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=29.90 E-value=1.1e+02 Score=24.40 Aligned_cols=75 Identities=9% Similarity=0.218 Sum_probs=49.4
Q ss_pred cCcEEEEEEccCCc-------EEEEEEeCCCCHHHHHHHHhhhhCCCCCCeEEE-ecCccc-cccCcccccc---cccCC
Q 012736 74 RGGMQIFVKTLTGK-------TITLEVESSDTIDNVKAKIQDKEGIPPDQQRLI-FAGKQL-EDGRTLADYN---IQKES 141 (457)
Q Consensus 74 ~~~~~i~vk~~~g~-------~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~-~~g~~L-~d~~tl~~y~---i~~~s 141 (457)
++.+.|.|+-..+. .-.+-|+.+.||+++..-|..+..+++++-.++ |.+..+ ..+.++++.. -.++.
T Consensus 33 P~kIPVIvEk~~~s~~~P~Ldk~KflVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kdeDG 112 (130)
T 2zjd_A 33 PTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDG 112 (130)
T ss_dssp TTEEEEEEEECTTCCSSCCCSCCEEEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCTTS
T ss_pred CCceEEEEEEcCCCCcCccccccEEEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCCCC
Confidence 34556666433221 234569999999999999999999999876666 766655 4455666642 12455
Q ss_pred cceeEEE
Q 012736 142 TLHLVLR 148 (457)
Q Consensus 142 ~i~l~~~ 148 (457)
.+++...
T Consensus 113 fLyv~Ys 119 (130)
T 2zjd_A 113 FLYMVYA 119 (130)
T ss_dssp CEEEEEE
T ss_pred EEEEEEe
Confidence 6666654
No 343
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=29.31 E-value=65 Score=24.16 Aligned_cols=39 Identities=28% Similarity=0.367 Sum_probs=33.0
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeE-EEEcCe
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 428 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~-l~~~g~ 428 (457)
...+++.|++..+=.++|..|+..+++.+..-+ +...|+
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 358999999999999999999999999998775 344444
No 344
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=28.98 E-value=1.9e+02 Score=22.65 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=32.6
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|.++.||+++...|.++..+++++-.++|-+..+ ..+.++
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m 93 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALM 93 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchH
Confidence 4568899999999999999999999887766643334 334444
No 345
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=28.48 E-value=1e+02 Score=23.74 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=32.6
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCcccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl~ 285 (457)
.+-|..+.||+++...|..+.++++++-.++|.+..+ ..+.++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~ 91 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMG 91 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHH
Confidence 4677889999999999999999999886566644434 4444443
No 346
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=28.26 E-value=1.6e+02 Score=22.91 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=32.5
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCcccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTLA 285 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl~ 285 (457)
.+-|..+.||+++...|..+.++++++-.++|.+..+ ..+.++.
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~ 92 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMG 92 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHH
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHH
Confidence 3567889999999999999999999886666644434 4444443
No 347
>3kh0_A Ralgds, ralgef, RAL guanine nucleotide dissociation stimulator; structural genomics consortium, SGC, RAS-association domain, alternative splicing; 2.10A {Homo sapiens} PDB: 2rgf_A 1lxd_A
Probab=28.14 E-value=2.2e+02 Score=22.84 Aligned_cols=75 Identities=19% Similarity=0.257 Sum_probs=52.3
Q ss_pred eEEEEcCCCcEEE-EEecccccHHHHHHHHhhhhCCCCcc---ceE---eeccEEcc-CCCcccccccccccceeEEEEe
Q 012736 2 QIFVKTLTGKTIT-LEVESSDTIDNVKAKIQDKEGIPPDQ---QRL---IFAGKQLE-DGRTLADYNIQKESTLHLVLRL 73 (457)
Q Consensus 2 ~i~~~~~~g~~~~-~~v~~~dtv~~ik~ki~~~~~ip~~~---q~l---~~~g~~L~-~~~tl~~y~i~~~sti~l~~~~ 73 (457)
.|.++..+|.-+. |.+...|...++-++.-+|+++..+. ..| +=.|++|. .+..=-.|-+.......++++.
T Consensus 29 RVsvd~~~gnlYKSIllTsqDrtp~VI~rAL~Khnl~~~~~~~y~LvQ~Lp~~kEL~IPd~ANVFYAM~~sa~~dFvLR~ 108 (140)
T 3kh0_A 29 RVSLDVDNGNMYKSILVTSQDKAPAVIRKAMDKHNLEEEEPEDYELLQILSDDRKLKIPENANVFYAMNSTANYDFVLKK 108 (140)
T ss_dssp EEEEECSSSEEEEEEEEETTCBHHHHHHHHHHHTTCTTSCGGGEEEEEEEETTEEEECCTTCBHHHHSCTTSCCEEEEEE
T ss_pred EEEEEcCCCcEEEEEEeecccccHHHHHHHHHHhCCCCCchhceEEEEEcCCCCeEecCCCCceEEEecCCCCccEEEee
Confidence 4677888887665 99999999999999999999986653 122 12466652 2222336777777778888886
Q ss_pred cCc
Q 012736 74 RGG 76 (457)
Q Consensus 74 ~~~ 76 (457)
++.
T Consensus 109 k~~ 111 (140)
T 3kh0_A 109 RTF 111 (140)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 348
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=27.77 E-value=66 Score=25.57 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=39.3
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCccccc---CCCCCCEEEEEEe
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVLR 452 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~---~i~~~~~i~l~~r 452 (457)
-+-|+.+.||+++...|..+..+++++-..+| ++.....+.++++. .-.++.-|++...
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m~~lY~~~kdeDGfLY~~Ys 118 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATMGSLYQEHHDEDFFLYIAFS 118 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEec
Confidence 35689999999999999999999998855444 55433455555432 2223334666543
No 349
>2eel_A Cell death activator CIDE-A; CIDE-N domain, cell death- inducing DFFA-like effector A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.57 E-value=93 Score=23.21 Aligned_cols=49 Identities=14% Similarity=0.266 Sum_probs=34.4
Q ss_pred ccHHHHHHHHhhhcCCCCCCeEEEE--cCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 401 DTIDNVKAKIQDKEGIPPDQQRLIF--AGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gip~~~q~l~~--~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+..||+.+.+++.+++...-+|+. +|..++|+.-+.-+ +..|+.+.++
T Consensus 28 ~sL~EL~~K~~~~l~l~~~~~~lvLeeDGT~VddEeyF~tL---p~nT~lmvL~ 78 (91)
T 2eel_A 28 SSLQELISKTLDALVIATGLVTLVLEEDGTVVDTEEFFQTL---GDNTHFMILE 78 (91)
T ss_dssp SSHHHHHHHHHHHTTCSSSCEEEEETTTCCBCCCHHHHTTS---CSSEEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcEEEEeeCCcEEechhhhhhC---CCCCEEEEEc
Confidence 4799999999999999865666655 69999877533332 2456666554
No 350
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=26.85 E-value=61 Score=24.30 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=33.2
Q ss_pred CCcEEEEEeeCCCcHHHHHHHhhcccCCCCCCce-EEecCe
Q 012736 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
...++++.|++.+|=.++|+.++..+++.+..=+ +...|.
T Consensus 26 ~~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK 66 (93)
T 3r8s_T 26 KSNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGK 66 (93)
T ss_dssp TTSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCC
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCc
Confidence 3478999999999999999999999999998533 445554
No 351
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=25.95 E-value=1.5e+02 Score=23.24 Aligned_cols=43 Identities=9% Similarity=0.219 Sum_probs=32.8
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCCCccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d~~tl 284 (457)
.+-|.++.||+++...|.++..+++++-.++| ++.....+.++
T Consensus 51 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m 94 (119)
T 3h9d_A 51 KFLVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDTVLPSSAQM 94 (119)
T ss_dssp EEEEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTEECCTTSBH
T ss_pred eEEcCCCCCHHHHHHHHHHHhCCCccceEEEEECCcCCCccchH
Confidence 35788999999999999999999999866555 55533445554
No 352
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=25.87 E-value=4.2e+02 Score=24.93 Aligned_cols=105 Identities=10% Similarity=0.110 Sum_probs=68.6
Q ss_pred CCCcHHHHHHHhhcccCCCCCCceEEecCeeccCCCcccccccccCceEEEEEEecCceeeEEEcCCCCEEEEEecC-Cc
Q 012736 323 SSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVES-SD 401 (457)
Q Consensus 323 ~~~Tv~~lK~~I~~~~~ip~~~q~l~~~g~~L~d~~~l~~~~i~~~~~l~l~~~~~~~~~i~v~~~~g~~~~l~v~~-~~ 401 (457)
.+.|+.++++.|.+++. .|-..+ .+.+......+.+|+|...-.+.=.+.+.+ ..
T Consensus 117 aG~T~~e~~~~I~~~L~----------------------~~~~~P--~V~V~v~~~~~~~V~V~GeV~~PG~y~l~~~~~ 172 (359)
T 2j58_A 117 AGKTVSQVRQDITSRLT----------------------TYIESP--QVDVSIAAFRSQKVYVTGEVANSGKQAITNIPL 172 (359)
T ss_dssp TTCCHHHHHHHHHHHHT----------------------TTSSSC--CEEEEEEECCSCEEEEEESBSSCEEEECCSSCC
T ss_pred CCCCHHHHHHHHHHHHH----------------------HhccCC--eEEEEEccCCceEEEEEceecCCeEEEeCCCCC
Confidence 68899999999998843 111122 344444444567889987666666778888 88
Q ss_pred cHHHHHHHHhhhcC-CCCCCeEEEEcCeec--------CCCCcccccCCCCCCEEEEEE
Q 012736 402 TIDNVKAKIQDKEG-IPPDQQRLIFAGKQL--------EDGRTLADYNIQKESTLHLVL 451 (457)
Q Consensus 402 tV~~lK~~i~~~~g-ip~~~q~l~~~g~~L--------~d~~tL~~~~i~~~~~i~l~~ 451 (457)
||.+.-.+.-.... -......|.-+|+.. .+...-.++-+++||+|++--
T Consensus 173 tl~~ai~~AGG~t~~a~~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~ 231 (359)
T 2j58_A 173 TVMDAINAAGGLAADADWRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPS 231 (359)
T ss_dssp BHHHHHHHTTSBCTTBCTTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECB
T ss_pred cHHHHHHHcCCCCcccccceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEee
Confidence 99887766554432 223556777788743 223334557789999998853
No 353
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=25.82 E-value=76 Score=24.51 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=38.3
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCccccc---CCCCCCEEEEEE
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~---~i~~~~~i~l~~ 451 (457)
-+-|+.+.||+++...|..+.++++++-..+| ++.....+.++++. .-.++.-|+++.
T Consensus 47 KflVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Y 108 (110)
T 2r2q_A 47 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAY 108 (110)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred EEEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHHHHHcCCCCCEEEEEE
Confidence 45678899999999999999999988754444 55544455565543 212233465543
No 354
>1f2r_I Inhibitor of caspase-activated DNAse; alpha-beta roll, protein-protein complex, DNA binding protein; NMR {Mus musculus} SCOP: d.15.2.1
Probab=25.71 E-value=78 Score=24.07 Aligned_cols=49 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred ccHHHHHHHHhhhcCC----CCCCeEEEEcCeecCCCCcccccCCCCCCEEEEEEe
Q 012736 401 DTIDNVKAKIQDKEGI----PPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 452 (457)
Q Consensus 401 ~tV~~lK~~i~~~~gi----p~~~q~l~~~g~~L~d~~tL~~~~i~~~~~i~l~~r 452 (457)
.+..+|+.+.+++.++ .+....|..+|..++|+.-+... +..|+.+.++
T Consensus 37 ~SL~EL~~K~~~~l~l~~~~~~~~lvLeeDGT~VddEeYF~tL---p~nT~lmvL~ 89 (100)
T 1f2r_I 37 SSLEELRSKACELLAIDKSLTPITLVLAEDGTIVDDDDYFLCL---PSNTKFVALA 89 (100)
T ss_dssp SSHHHHHHHHHHHHCCCGGGCSCEEEESSSCCBCCSSSSSSSS---CSCCEEEEEC
T ss_pred CCHHHHHHHHHHHhccCCCCCceEEEEeeCCcEEechhHhhcC---CCCCEEEEEc
No 355
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.55 E-value=58 Score=25.05 Aligned_cols=69 Identities=23% Similarity=0.369 Sum_probs=51.7
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCC--CCeEEEeCC---cccCCCccccccccCCCCeEEEE
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP--DQQRLIFAG---KQLEDGRTLADYNIQKESTLHLV 298 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~--~~q~L~~~g---~~L~d~~tl~~~~i~~~~tl~l~ 298 (457)
..|+|...+ ...++.|....-|+.|..++-++..++- .++.|-.-. +.+.-..||..|||+....+++-
T Consensus 27 L~V~V~d~~-~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ft 100 (112)
T 2lgx_A 27 LSVHVTDVN-RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFT 100 (112)
T ss_dssp EECCBTTTT-BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBB
T ss_pred EEEEEecCC-ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceec
Confidence 455555544 6777888888899999999998877644 467676543 34788999999999998887653
No 356
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=25.29 E-value=67 Score=23.63 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=30.2
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
..++++.|++..|=.++|+.++..+++.+..-+-
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT 55 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVNT 55 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEEe
Confidence 4579999999999999999999999999876653
No 357
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=25.29 E-value=2e+02 Score=20.96 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=47.5
Q ss_pred EEEEEEeCCCCHHHHHHHHhhh-hCC--C--CCCeEEEecCcc--ccccCcccccccccCCcceeEE
Q 012736 88 TITLEVESSDTIDNVKAKIQDK-EGI--P--PDQQRLIFAGKQ--LEDGRTLADYNIQKESTLHLVL 147 (457)
Q Consensus 88 ~~~l~v~~~~tV~~lK~~i~~~-~gi--p--~~~q~L~~~g~~--L~d~~tl~~y~i~~~s~i~l~~ 147 (457)
...+.|+..+|+.++=++++.. .|. + |...++..+|.. |..+.|+++-||.+-..|.+..
T Consensus 16 ~~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 16 VQLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTCEEEEEE
T ss_pred EEEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCCCEeeccCCCcceEEEEEE
Confidence 3567799999999999999864 342 1 235678899988 9999999999999888777653
No 358
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=25.24 E-value=49 Score=23.89 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.9
Q ss_pred EEEEEecCCccHHHHHHHHhhhcCCC-----CCCeEEEEcC
Q 012736 392 TITLEVESSDTIDNVKAKIQDKEGIP-----PDQQRLIFAG 427 (457)
Q Consensus 392 ~~~l~v~~~~tV~~lK~~i~~~~gip-----~~~q~l~~~g 427 (457)
.+.+-|+++.+..+|..+|.++.++. ....+|-|..
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkD 43 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQD 43 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEc
Confidence 67899999999999999999999976 3556676643
No 359
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=24.41 E-value=38 Score=24.18 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=34.4
Q ss_pred EEEEeCCCCHHHHHHHHhhhhCCCCCCeEEEecCccccccCcccccccccCCcceeEEE
Q 012736 90 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLR 148 (457)
Q Consensus 90 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tl~~y~i~~~s~i~l~~~ 148 (457)
.++++...||.+|.+.+ ++++..-.+..+|+....+ +-+++|+.|.+...
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~-----~~L~dGD~V~i~pp 73 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED-----DEVKDGDFVEVIPV 73 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS-----SCCCSSCCCBCSCC
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC-----CCcCCCCEEEEEcc
Confidence 34556678999998765 4666666677888877543 55777887776543
No 360
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=24.18 E-value=1.4e+02 Score=21.46 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=35.0
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~ 45 (457)
|-+-.+|++...++|.|+.|+.+.=.|+-++-|+.++. .-.|
T Consensus 4 irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~pe~-C~V~ 45 (77)
T 1c1y_B 4 IRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQPEC-CAVF 45 (77)
T ss_dssp EEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCGGG-EEEE
T ss_pred EEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCHHH-eEEE
Confidence 34556899999999999999999999999999997764 4444
No 361
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.11 E-value=61 Score=23.86 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCcEEEEEeeCCCcHHHHHHHhhcccCCCCCC
Q 012736 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~ 344 (457)
..+++++.|++.+|=.++|+.++..+++.+..
T Consensus 21 ~~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~ 52 (85)
T 1vq8_S 21 FQNKLQFAVDDRASKGEVADAVEEQYDVTVEQ 52 (85)
T ss_dssp HSCEEEEEECTTCCHHHHHHHHHHHHCCCEEE
T ss_pred hCCEEEEEECCCCCHHHHHHHHHHHhCCCceE
Confidence 35689999999999999999999999999875
No 362
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.10 E-value=93 Score=23.53 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=24.3
Q ss_pred eEEEEcCCCcEEEEEecccccHHHHHHH
Q 012736 2 QIFVKTLTGKTITLEVESSDTIDNVKAK 29 (457)
Q Consensus 2 ~i~~~~~~g~~~~~~v~~~dtv~~ik~k 29 (457)
+|.|.+.+|+..++++.+.+|+.+.-.+
T Consensus 2 ~vt~~~~~G~~~~~~~~~g~tll~a~~~ 29 (104)
T 3lxf_A 2 AILVTTRDGTRTEIQAEPGLSLMEALRD 29 (104)
T ss_dssp EEEEECTTSCEEEEECCTTSBHHHHHHH
T ss_pred EEEEEeCCCCEEEEEECCCChHHHHHHH
Confidence 5888899999999999999999986543
No 363
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=23.71 E-value=2.1e+02 Score=22.58 Aligned_cols=43 Identities=16% Similarity=0.245 Sum_probs=32.8
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEeCCccc-CCCccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQL-EDGRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~~g~~L-~d~~tl 284 (457)
.+-|.++.||+++...|.++..+++++-.++|-+..+ ..+.++
T Consensus 56 KflVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn~lPs~s~~m 99 (125)
T 3m95_A 56 KYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNVIPPTSATM 99 (125)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBH
T ss_pred EEEcCCCCEeeeehhhhHhhcCCCccccEEEEECCccCCccchH
Confidence 3578899999999999999999999986666644344 334444
No 364
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.37 E-value=95 Score=32.28 Aligned_cols=47 Identities=21% Similarity=0.179 Sum_probs=39.9
Q ss_pred CceeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCC-CCeEEEE
Q 012736 379 GGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-DQQRLIF 425 (457)
Q Consensus 379 ~~~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~-~~q~l~~ 425 (457)
..+.+.|..++|....+.|++.+|+.++-..|+.+.|+.. +.+-|++
T Consensus 262 ~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 262 KPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp CCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred CceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 4577888889999999999999999999999999999754 4556665
No 365
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=23.29 E-value=1e+02 Score=24.16 Aligned_cols=58 Identities=16% Similarity=0.212 Sum_probs=38.7
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCcccc---cCCCCCCEEEEEE
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLAD---YNIQKESTLHLVL 451 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~---~~i~~~~~i~l~~ 451 (457)
-+-|+.+.||+++...|..+..+++++-..+| ++.....+.++++ +.-.++.-|+++.
T Consensus 50 KflVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Y 111 (118)
T 3rui_B 50 KYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTY 111 (118)
T ss_dssp EEEEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEE
T ss_pred eEEcCCCCCHHHHHHHHHHHhCcCCCccEEEEECCccCCccchHHHHHHHcCCCCCeEEEEE
Confidence 35599999999999999999999987755555 5543344555443 2222344465554
No 366
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=22.93 E-value=2.7e+02 Score=21.71 Aligned_cols=69 Identities=13% Similarity=0.169 Sum_probs=50.7
Q ss_pred eeEEEecCC-----cEEEEEeeCCCcHHHHHHHhhc-ccC-------CCCCCceEEecCeec--cCCCcccccccccCce
Q 012736 306 QIFVKTLTG-----KTITLEVESSDTIDNVKAKIQD-KEG-------IPPDQQRLIFAGKQL--EDGRTLADYNIQKEST 370 (457)
Q Consensus 306 ~i~i~~~~g-----~~~~l~v~~~~Tv~~lK~~I~~-~~~-------ip~~~q~l~~~g~~L--~d~~~l~~~~i~~~~~ 370 (457)
++-...|++ --+.+.++|.++.++|-+++-. -++ |.-++-.+..+|+.. +.+++|++.|+.--|.
T Consensus 24 qLlYigWd~HllFcap~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~ 103 (119)
T 3u52_E 24 QLLYVYWPDHLLFCAPFALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSM 103 (119)
T ss_dssp EEEEEECTTCTTSCSCEEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEE
T ss_pred EEEEEEecCCeeecCceeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchhe
Confidence 333345776 3567999999999999888653 333 454555677788876 6789999999988788
Q ss_pred EEEE
Q 012736 371 LHLV 374 (457)
Q Consensus 371 l~l~ 374 (457)
|+++
T Consensus 104 lrf~ 107 (119)
T 3u52_E 104 LTVT 107 (119)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7776
No 367
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.84 E-value=1.4e+02 Score=26.86 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=35.0
Q ss_pred EEEEcCCCcEEEEEecccccHHHHHHHHhhhhCCCCccceEee
Q 012736 3 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF 45 (457)
Q Consensus 3 i~~~~~~g~~~~~~v~~~dtv~~ik~ki~~~~~ip~~~q~l~~ 45 (457)
|-|...+|.+.++.|+++.|+.++-..+.++.+++.....-++
T Consensus 37 v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 37 VKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4455678999999999999999999999999998776544443
No 368
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.29 E-value=85 Score=23.60 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeE
Q 012736 389 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 389 ~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
+++ +++.|++..|=.++|..|+..+++.+..-+
T Consensus 22 ~n~-y~F~V~~~anK~eIK~aVE~lf~VkV~~VN 54 (95)
T 2zjr_Q 22 RGV-YSFWVSPKATKTEIKDAIQQAFGVRVIGIS 54 (95)
T ss_dssp TTC-CEEEECSSCTHHHHHHHHHHHHCCCCSEEE
T ss_pred CCE-EEEEEcCCCCHHHHHHHHHHHhCCCceEEE
Confidence 344 999999999999999999999999998765
No 369
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=22.29 E-value=1.5e+02 Score=26.65 Aligned_cols=42 Identities=14% Similarity=0.107 Sum_probs=34.7
Q ss_pred eeeEEEcCCCCEEEEEecCCccHHHHHHHHhhhcCCCCCCeE
Q 012736 381 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 381 ~~i~v~~~~g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
+.|.|-..+|.+.++.|++++|..++-..+..+.+++.+...
T Consensus 35 ~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~ 76 (291)
T 3tca_A 35 LVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDW 76 (291)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTE
T ss_pred eEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCe
Confidence 345555678889999999999999999999999998776544
No 370
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=22.10 E-value=94 Score=24.30 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=39.8
Q ss_pred EEEecCCccHHHHHHHHhhhcCCCCCCeEEEE-cCeecCCCCccccc---CCCCCCEEEEEEe
Q 012736 394 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLEDGRTLADY---NIQKESTLHLVLR 452 (457)
Q Consensus 394 ~l~v~~~~tV~~lK~~i~~~~gip~~~q~l~~-~g~~L~d~~tL~~~---~i~~~~~i~l~~r 452 (457)
-+-|+.+.||+++...|..+.++++++-..+| ++.....+.++++. .-..+.-|+++..
T Consensus 48 KflVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys 110 (117)
T 1eo6_A 48 KYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYS 110 (117)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EEEcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEe
Confidence 35688899999999999999999988754445 55533455555543 2223445777654
No 371
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=22.09 E-value=1.7e+02 Score=22.95 Aligned_cols=72 Identities=14% Similarity=0.131 Sum_probs=46.8
Q ss_pred eeeeEeeccCceEEeeecCCchHHHHHHHHhhhhCCCCC------ceEEE---ECCe--ecCCCCCccccCcCcCcEEEE
Q 012736 153 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPD------QQRLI---FAGK--QLEDGRTLADYNIQKESTLHL 221 (457)
Q Consensus 153 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~------~q~L~---~~g~--~L~d~~tL~~y~i~~~~~i~l 221 (457)
+...|-..+...+++.+....|+.+++..+.++.+...+ .+.|+ ++|. .|.++..--.-.+.-+..|.+
T Consensus 10 i~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~NgRLfv 89 (120)
T 2dhz_A 10 IFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGINSHLFA 89 (120)
T ss_dssp EEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSSEEEEE
T ss_pred EEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeeccccceEEE
Confidence 344455566777788899999999999999999887554 67665 5664 345443333334455555555
Q ss_pred EEE
Q 012736 222 VLR 224 (457)
Q Consensus 222 ~~~ 224 (457)
..+
T Consensus 90 c~k 92 (120)
T 2dhz_A 90 CTR 92 (120)
T ss_dssp ECT
T ss_pred eeh
Confidence 443
No 372
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=21.35 E-value=99 Score=23.07 Aligned_cols=32 Identities=13% Similarity=0.074 Sum_probs=29.6
Q ss_pred CEEEEEecCCccHHHHHHHHhhhcCCCCCCeE
Q 012736 391 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR 422 (457)
Q Consensus 391 ~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~ 422 (457)
..+++.|++..+=.++|+.|+..+++.+..-+
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~Vn 53 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVN 53 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeee
Confidence 68999999999999999999999999987764
No 373
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.70 E-value=79 Score=23.63 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=32.1
Q ss_pred cEEEEEeeCCCcHHHHHHHhhcccCCCCCCce-EEecCe
Q 012736 315 KTITLEVESSDTIDNVKAKIQDKEGIPPDQQR-LIFAGK 352 (457)
Q Consensus 315 ~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~q~-l~~~g~ 352 (457)
+++++.|++.+|=.++|+.++..+++.+..-+ +...|.
T Consensus 22 n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK 60 (92)
T 3tve_T 22 GKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGK 60 (92)
T ss_dssp TEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCc
Confidence 78999999999999999999999999987533 345554
No 374
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.63 E-value=1e+02 Score=22.68 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=30.3
Q ss_pred CCEEEEEecCCccHHHHHHHHhhhcCCCCCCeEE
Q 012736 390 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRL 423 (457)
Q Consensus 390 g~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~l 423 (457)
..++++.|++..+=.++|+.++..+++.+..-+-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 4589999999999999999999999999876654
No 375
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.34 E-value=91 Score=22.97 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=29.0
Q ss_pred CCcEEEEEeeCCCcHHHHHHHhhcccCCCCCC
Q 012736 313 TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ 344 (457)
Q Consensus 313 ~g~~~~l~v~~~~Tv~~lK~~I~~~~~ip~~~ 344 (457)
..+++++.|++.+|=.++|+.++..+++.+..
T Consensus 22 ~~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~ 53 (86)
T 3j21_T 22 KENKLTFIVDRRATKQDIKRAVEEIFNVKVEK 53 (86)
T ss_dssp TSCEEEEEECTTCCHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEEcCCCCHHHHHHHHHHHcCCCceE
Confidence 35789999999999999999999999998874
No 376
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=20.30 E-value=1.8e+02 Score=29.35 Aligned_cols=45 Identities=18% Similarity=0.117 Sum_probs=37.1
Q ss_pred eeEEEEccCCceEEEEeecCccHHHHHHHHhhhcCCCC-C-CeEEEe
Q 012736 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPP-D-QQRLIF 273 (457)
Q Consensus 229 ~~i~v~~~~g~~~~~~v~~~~tV~~lK~~I~~~~~ip~-~-~q~L~~ 273 (457)
+.+.|..++|....+.+++..|+++|-..++++.|+.. . ..-|..
T Consensus 217 ~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 217 MTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred cceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 45667788999999999999999999999999999974 3 344544
No 377
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=20.26 E-value=1.5e+02 Score=21.98 Aligned_cols=43 Identities=16% Similarity=0.184 Sum_probs=32.8
Q ss_pred EEEeecCccHHHHHHHHhhhcCCCCCCeEEEe-CCcccCC-Cccc
Q 012736 242 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIF-AGKQLED-GRTL 284 (457)
Q Consensus 242 ~~~v~~~~tV~~lK~~I~~~~~ip~~~q~L~~-~g~~L~d-~~tl 284 (457)
.+.|.++.||+.+..-|.++..+++++-.++| ++.-+.. +.++
T Consensus 23 KflVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~ 67 (91)
T 4gdk_A 23 KWAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEV 67 (91)
T ss_dssp EEEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBH
T ss_pred EEEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHH
Confidence 47788999999999999999999999866666 4433332 4444
No 378
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=20.11 E-value=1.6e+02 Score=28.42 Aligned_cols=51 Identities=12% Similarity=0.043 Sum_probs=38.6
Q ss_pred CCCCEEEEEecCCccHHHHHHHHh--hhcCC---CCCCeEEEEc------CeecCCCCcccc
Q 012736 388 LTGKTITLEVESSDTIDNVKAKIQ--DKEGI---PPDQQRLIFA------GKQLEDGRTLAD 438 (457)
Q Consensus 388 ~~g~~~~l~v~~~~tV~~lK~~i~--~~~gi---p~~~q~l~~~------g~~L~d~~tL~~ 438 (457)
++|....+.+++++||.++-..|+ .+.|+ .++.+-|.+. ..-|+++.+|.+
T Consensus 35 ~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~l~~ 96 (392)
T 4eku_A 35 PGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMTVGE 96 (392)
T ss_dssp GGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSBHHH
T ss_pred CCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCcHHH
Confidence 678888999999999999999999 56775 3445666542 246677777766
Done!