Query 012737
Match_columns 457
No_of_seqs 130 out of 1277
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 15:15:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012737.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012737hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 6.1E-17 2.1E-21 162.8 24.1 365 20-421 7-380 (445)
2 3gia_A Uncharacterized protein 99.6 2.8E-13 9.7E-18 136.0 30.9 239 20-288 5-248 (444)
3 4djk_A Probable glutamate/gamm 99.5 3.7E-12 1.3E-16 130.2 26.7 247 20-290 10-263 (511)
4 2jln_A MHP1; hydantoin, transp 98.5 3.5E-05 1.2E-09 77.9 25.2 151 20-188 24-176 (501)
5 3dh4_A Sodium/glucose cotransp 98.0 0.0034 1.2E-07 63.8 27.3 150 20-190 19-170 (530)
6 2xq2_A Sodium/glucose cotransp 97.7 0.019 6.5E-07 59.1 26.8 150 20-190 48-199 (593)
7 2a65_A Leutaa, Na(+):neurotran 82.1 43 0.0015 33.3 26.3 31 23-53 9-40 (519)
8 4ain_A Glycine betaine transpo 36.3 3.3E+02 0.011 27.0 12.3 23 21-43 94-116 (539)
9 3tx3_A Uncharacterized protein 34.1 2.4E+02 0.0083 24.7 9.7 22 259-280 27-48 (249)
10 3l1l_A Arginine/agmatine antip 31.4 3.3E+02 0.011 25.6 14.6 48 90-137 260-307 (445)
11 2wsw_A BCCT family betaine/car 29.3 1.9E+02 0.0064 28.5 8.6 71 114-184 414-485 (509)
12 3gia_A Uncharacterized protein 28.0 2.9E+02 0.0099 26.1 10.0 47 91-137 259-305 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.76 E-value=6.1e-17 Score=162.82 Aligned_cols=365 Identities=13% Similarity=0.043 Sum_probs=205.7
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHHH
Q 012737 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRLN 99 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 99 (457)
+|+.+.++..+..+++++|+|++.+|...++.|.. +++..++.++........+.|...+. |+.| ...+..++.
T Consensus 7 ~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G----g~y~~~~~~ 80 (445)
T 3l1l_A 7 AHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG----GSYAYARRC 80 (445)
T ss_dssp CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT----THHHHHHHH
T ss_pred CCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC----CchhhHHhH
Confidence 67899999999999999999999999998888874 78888888999988888888866542 3333 566778999
Q ss_pred cCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchhHH
Q 012737 100 LGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWL 179 (457)
Q Consensus 100 ~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~ 179 (457)
+||+.+++..+...+.......++....++++..+++... .+ .....+.++..++...+ ..+..|....+
T Consensus 81 ~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~i-n~~g~~~~~~~ 150 (445)
T 3l1l_A 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------DP--WVLTITCVVVLWIFVLL-NIVGPKMITRV 150 (445)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-------SH--HHHHHHHHHHHHHHHHH-HHHCHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-------cc--HHHHHHHHHHHHHHHHH-HHhchHHHHHH
Confidence 9999999999999888877777787777777665443210 00 10011111111111111 12334444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCCCccch
Q 012737 180 SVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSPPPENK 259 (457)
Q Consensus 180 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~~ 259 (457)
+.+.....+. ..+...+......++. ...++.. ........+++.++...+|+|.|.+......+|+|||+ |
T Consensus 151 ~~~~~~~~i~---~~~~~~i~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~---r 222 (445)
T 3l1l_A 151 QAVATVLALI---PIVGIAVFGWFWFRGE-TYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPK---R 222 (445)
T ss_dssp HHHHHHHHHH---HHHHHHHTTSTTCCCC-CCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSHH---H
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHhChh-hcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc---c
Confidence 4333332221 1111111111111111 0001111 11111244677899999999999999999999999996 8
Q ss_pred hhhHHHHHHHHHHHHHHHhhhccccccccccccc----cccccccccCchhHHHHHHHHHHHHhhhcccccccchHHHHH
Q 012737 260 TMKMASMISIFITTFFYLCCGCFGYAAFGNDTPG----NLLTGFGFYEPYWLIDLANACIVLHLVGGYQIFSQPVFAFVE 335 (457)
Q Consensus 260 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~ 335 (457)
+.+|++..+..++.++|+..........+.+... ....-......++...+..+...+..+++.-......-..+.
T Consensus 223 ~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 302 (445)
T 3l1l_A 223 NVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAK 302 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998777655555543211 111111100123455566666666666654332222222222
Q ss_pred HHHhh-hCCCCCcccCcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHc----CChHHHHHHhhhhhcchhhhhhhh
Q 012737 336 RWFTR-KYPSSGFVNNFYTFKLPLLPPLRVNILRLCFRTAYVVSTTAVAIIF----PYFNQVLGVLGALNFWPLAIYFPV 410 (457)
Q Consensus 336 ~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~i----p~~~~v~~~~Ga~~~~~~~~ilP~ 410 (457)
..=.+ ..|+ ...+.+..+.| ..-..+..++..+ ..+.... ..++.+.++.+. ...+.|.+++
T Consensus 303 ~~a~dg~lP~--~~~~~~~~~~P--------~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~~~~y~~~~ 369 (445)
T 3l1l_A 303 AAADDGLFPP--IFARVNKAGTP--------VAGLIIVGILMTI-FQLSSISPNATKEFGLVSSVSVI--FTLVPYLYTC 369 (445)
T ss_dssp HHHHTTSSCG--GGGCCCTTCCC--------HHHHHHHHHHHHH-HHHSTTSHHHHCCCHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHhCCCCcH--HHHhcCCCCCC--------HHHHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 11111 1221 11111111222 2222222221111 1111112 236666666642 3478999999
Q ss_pred HHHHhHhccCC
Q 012737 411 EMYFVQKKIGA 421 (457)
Q Consensus 411 l~~~~~~~~~~ 421 (457)
+.+++.+|+++
T Consensus 370 ~~~~~~r~~~~ 380 (445)
T 3l1l_A 370 AALLLLGHGHF 380 (445)
T ss_dssp HHHHHHHSSSS
T ss_pred HHHHHHhhcCc
Confidence 99999887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.64 E-value=2.8e-13 Score=135.96 Aligned_cols=239 Identities=12% Similarity=0.069 Sum_probs=155.1
Q ss_pred cccchHHHHHHHHHhhhhccccchhHH-HHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012737 20 LRTGTLRSCVAHIITAVIGSGVLSLAW-STAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~-af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.+.++..+..+++++|+|++..|- +.+.+|. ..++..++.+++.......+.|...+. |+.| ...+.+++
T Consensus 5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~-P~~G----g~y~~~~~ 78 (444)
T 3gia_A 5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKI-VSNA----GPIAFIHK 78 (444)
T ss_dssp CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTC-CCTT----THHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC----cHHHhHHH
Confidence 578999999999999999999998764 4556776 678888999999999999999976653 3333 55678899
Q ss_pred HcCCcc-hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHH---HHHhhcCCCcC
Q 012737 99 NLGKTQ-TWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAV---QVVMSQIPDFH 174 (457)
Q Consensus 99 ~~Gk~~-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v---~~~l~~~~~l~ 174 (457)
.+||+. ..++.+...+........+....++++..+++.. ...++..+..++ +..+.-.+..|
T Consensus 79 ~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~in~~g~~ 145 (444)
T 3gia_A 79 AIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP-------------INTFNIAITEIGIVAFFTALNFFGSK 145 (444)
T ss_dssp HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------------CCHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999962 2233566666666677777778888777665320 011121111111 11111223344
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCCChhHHHHHHHHHHHHHHhhccCcceehhhhccccCC
Q 012737 175 NMEWLSVIAAIMSFAYSFIGFGLGFAKVIENGRIKGSIAGVPTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLKSP 254 (457)
Q Consensus 175 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p 254 (457)
....+..+.....+...++.++..+ ...++. +..+......+.+++.++....|+|.|.+......+|+|||
T Consensus 146 ~~~~~~~~~~~~~i~~~~~~ii~~~---~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P 217 (444)
T 3gia_A 146 AVGRAEFFIVLVKLLILGLFIFAGL---ITIHPS-----YVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENP 217 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHCCGG-----GTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHcChh-----hcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCc
Confidence 4444444444333322222221112 111111 12111122334567888999999999999999999999999
Q ss_pred CccchhhhHHHHHHHHHHHHHHHhhhcccccccc
Q 012737 255 PPENKTMKMASMISIFITTFFYLCCGCFGYAAFG 288 (457)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 288 (457)
+ |+.+|++..+..++.++|...........+
T Consensus 218 ~---r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~ 248 (444)
T 3gia_A 218 K---KNVPRAIFISILIVMFVYVGVAISAIGNLP 248 (444)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred c---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 5 789999999999999999977766544444
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.52 E-value=3.7e-12 Score=130.19 Aligned_cols=247 Identities=12% Similarity=0.030 Sum_probs=142.0
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHhhCcchHHHHHHHHHHHHH-HHHHHHHhccc--CCCCcCCcccccHHHHH
Q 012737 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQLGWIAGPASLLCFAIVTY-VSSFLLADCYR--SPDPINGKRNRSYIDAV 96 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~g~i~l~~~~~~~~-~s~~~l~~~~~--~~~~~~~~~~~~y~~l~ 96 (457)
+|+.+.++.++..++.++| +.++|. .+..|.. .++..++.+++.. .....+.|... . .| +| .....+
T Consensus 10 ~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~-~P-~G----G~y~~~ 79 (511)
T 4djk_A 10 AKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDG-WE-EG----GVFAWV 79 (511)
T ss_dssp --CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSC-C--------CHHHHH
T ss_pred CccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHccccc-CC-CC----ChhhhH
Confidence 7889999999999999986 577776 4667754 4444444444433 36677777655 4 33 34 556778
Q ss_pred HHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCch
Q 012737 97 RLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNM 176 (457)
Q Consensus 97 ~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l 176 (457)
++.+||+.+++..+...+.......++....++.+..++. .++-.... +......+++.++...+ -.+..|..
T Consensus 80 ~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~--~~~~~~~~~~~~~~~~i-n~~g~~~~ 152 (511)
T 4djk_A 80 SNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WPALNEDP--ITKTIAALIILWALALT-QFGGTKYT 152 (511)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CGGGTSCS--SHHHHHHHHHHHHHHHH-HHTCSSSH
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcccccCc--HHHHHHHHHHHHHHHHH-HHhChHHH
Confidence 9999999999999988888877777777766666654321 01000000 00011111111112222 23445555
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccc--cccccC-CCCChhHHHHHHHHHHHHHHhhccCcceehhhhcccc
Q 012737 177 EWLSVIAAIMS-FAYSFIGFGLGFAKVIENGRIK--GSIAGV-PTANLADKLWLAFQALGDIAFAYPYSIILLEIQDTLK 252 (457)
Q Consensus 177 ~~~s~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~ 252 (457)
..++.+..... +...+++++..+.....+++.. .+.++. ++.. ....+.++...+|+|.|.+......+|+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 153 ARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFS----KVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp HHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTT----STTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcc----cchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 55555543321 1111122222222111111110 011111 1111 11234567788999999999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHhhhcccccccccc
Q 012737 253 SPPPENKTMKMASMISIFITTFFYLCCGCFGYAAFGND 290 (457)
Q Consensus 253 ~p~~~~~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 290 (457)
||+ |+.+|++..+..++.++|+...+.-....+++
T Consensus 229 ~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 229 NPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp CCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred Ccc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 996 89999999999999999998877666666544
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.50 E-value=3.5e-05 Score=77.89 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=97.8
Q ss_pred cccchHHHHHHHHHhhhhccccchhHHHHHh-hCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012737 20 LRTGTLRSCVAHIITAVIGSGVLSLAWSTAQ-LGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~-~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
+|+.++++-+..-++..++.+.+.+...+.. .++..+++.+++..++....+.+....-. +.| .++.++.|.
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~----~~G---l~~~v~~R~ 96 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI----RWG---INFTVAARM 96 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHC---CCHHHHTTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh----hcC---CChhhhhHh
Confidence 6777888887777887777777766655544 33344555544444444444443333211 112 379999999
Q ss_pred HcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccC-CccchHhHHHHHHHhhcCCCcCchh
Q 012737 99 NLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYG-DTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
.||+++..+..++..+..+|....-....++.+.+.+.... . .. .....+++.++.+++. ...++.++
T Consensus 97 ~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g---------~~~~~v~~~i~~~l~~~~~-~~G~~~i~ 165 (501)
T 2jln_A 97 PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G---------FTNLPLWIVIFGAIQVVTT-FYGITFIR 165 (501)
T ss_dssp TSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------CCCHHHHHHHHHHHHHHHH-TTHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------cchHHHHHHHHHHHHHHHH-HhCHHHHH
Confidence 99999999999999999999998888889999988765321 0 11 1233445555556665 44567777
Q ss_pred HHHHHHHHHHH
Q 012737 178 WLSVIAAIMSF 188 (457)
Q Consensus 178 ~~s~~~~~~~~ 188 (457)
++..+.....+
T Consensus 166 ~~~~~~~p~~~ 176 (501)
T 2jln_A 166 WMNVFASPVLL 176 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77666665444
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.02 E-value=0.0034 Score=63.79 Aligned_cols=150 Identities=11% Similarity=0.072 Sum_probs=86.2
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012737 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+++...+.+..+.+++. ++++|-...+.|+......... ++.....+..+.+..++. +..|.+|.-++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~------~~~T~~e~l~~ 91 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK------GIYTIPEFVEK 91 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT------TCCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHc------CCccHHHHHHH
Confidence 578899999999998888877 7889988888887643211111 111112222233322221 13599999999
Q ss_pred HcCCcchhhhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012737 99 NLGKTQTWFCGLLQNL-TFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
-||++.+.+..+...+ +.+..+.+.+...+..++.+++ .+...-+++.++++........++...
T Consensus 92 Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~aV~ 157 (530)
T 3dh4_A 92 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 157 (530)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHHTTC------CC
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999888777665443 2222333334444555555432 222333455566666777778888888
Q ss_pred HHHHHHHHHHHHH
Q 012737 178 WLSVIAAIMSFAY 190 (457)
Q Consensus 178 ~~s~~~~~~~~~~ 190 (457)
+.-.+..+.++.-
T Consensus 158 ~TD~iQ~~im~~g 170 (530)
T 3dh4_A 158 WTDVIQVFFLVLG 170 (530)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888877766543
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.70 E-value=0.019 Score=59.07 Aligned_cols=150 Identities=12% Similarity=0.092 Sum_probs=84.7
Q ss_pred cccchHHHHHHHHHhhhhccc-cchhHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHhcccCCCCcCCcccccHHHHHHH
Q 012737 20 LRTGTLRSCVAHIITAVIGSG-VLSLAWSTAQLGWIAGPASLLCFAIVTYVSSFLLADCYRSPDPINGKRNRSYIDAVRL 98 (457)
Q Consensus 20 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~g~i~l~~~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 98 (457)
.|+.+++...+.+..+.+++. .++.|-...+.|+......... .+........+.+-.++ .+ ..|.+|.-++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r----~~--~~T~~e~l~~ 120 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIE----KG--IYTIPEFVEK 120 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHH----TT--CCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHh----CC--CCCcHHHHHH
Confidence 578889999999988888776 6788988888887533221111 11111112222222222 11 3599999999
Q ss_pred HcCCcchhhhHHHHHH-HHHHHHHHHHHHhhhhHHHHHHhcccccCCCCCccccCCccchHhHHHHHHHhhcCCCcCchh
Q 012737 99 NLGKTQTWFCGLLQNL-TFYGTAVAYVITTSTSMRAIQKSNCYHREGHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNME 177 (457)
Q Consensus 99 ~~Gk~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~ 177 (457)
-|||+.+.+..+...+ +.+......+...+..++.+++ .+...-+++.++++........++...
T Consensus 121 Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 121 RFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999887776655443 2333333344445666666553 122233445555556667778888888
Q ss_pred HHHHHHHHHHHHH
Q 012737 178 WLSVIAAIMSFAY 190 (457)
Q Consensus 178 ~~s~~~~~~~~~~ 190 (457)
+.-.+..+..+..
T Consensus 187 ~TD~iQ~iiml~~ 199 (593)
T 2xq2_A 187 WTDVIQVFFLVLG 199 (593)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8877777665543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=82.08 E-value=43 Score=33.32 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=24.6
Q ss_pred chHHHHHHHHHhhhhccc-cchhHHHHHhhCc
Q 012737 23 GTLRSCVAHIITAVIGSG-VLSLAWSTAQLGW 53 (457)
Q Consensus 23 ~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~ 53 (457)
.|-.+-++..+++.+|-| +.-.||...+-|-
T Consensus 9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGG 40 (519)
T 2a65_A 9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGG 40 (519)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 345667788899999999 7889998887663
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=36.32 E-value=3.3e+02 Score=26.99 Aligned_cols=23 Identities=17% Similarity=0.195 Sum_probs=18.0
Q ss_pred ccchHHHHHHHHHhhhhccccch
Q 012737 21 RTGTLRSCVAHIITAVIGSGVLS 43 (457)
Q Consensus 21 ~~~s~~~a~~~li~~~iG~GiL~ 43 (457)
..-|.++-+..++.+-+|+|++-
T Consensus 94 PefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 94 PEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCcchHHHHHHHHHhhcchhee
Confidence 34567777888899999999874
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=34.06 E-value=2.4e+02 Score=24.74 Aligned_cols=22 Identities=9% Similarity=0.187 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHhhh
Q 012737 259 KTMKMASMISIFITTFFYLCCG 280 (457)
Q Consensus 259 ~~~~~~~~~~~~~~~~~Y~~~g 280 (457)
+++++.+.....+..++|....
T Consensus 27 p~lr~~vl~Pllinl~L~~~~~ 48 (249)
T 3tx3_A 27 KGLRRYVVVPILTNLILFSLAF 48 (249)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888877777766554
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.44 E-value=3.3e+02 Score=25.57 Aligned_cols=48 Identities=17% Similarity=0.271 Sum_probs=42.4
Q ss_pred ccHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 012737 90 RSYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKS 137 (457)
Q Consensus 90 ~~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 137 (457)
..+.++.+..+|+++..++.+...+..+++..+++...++.+...-.+
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 368899999999999999999999999999999999999988887654
No 11
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=29.35 E-value=1.9e+02 Score=28.53 Aligned_cols=71 Identities=7% Similarity=0.071 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHhcccccC-CCCCccccCCccchHhHHHHHHHhhcCCCcCchhHHHHHHH
Q 012737 114 LTFYGTAVAYVITTSTSMRAIQKSNCYHRE-GHNAPCAYGDTKHMLLFGAVQVVMSQIPDFHNMEWLSVIAA 184 (457)
Q Consensus 114 ~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~v~~~l~~~~~l~~l~~~s~~~~ 184 (457)
......+..+.++..|+....+...+.... +++++....+..|.++.+.+...+.....++.++..+.++.
T Consensus 414 ~l~iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~a 485 (509)
T 2wsw_A 414 WGFFILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGG 485 (509)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334455667889999999888887765432 12334344555666666555554444445666665554444
No 12
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=27.95 E-value=2.9e+02 Score=26.07 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=39.2
Q ss_pred cHHHHHHHHcCCcchhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHh
Q 012737 91 SYIDAVRLNLGKTQTWFCGLLQNLTFYGTAVAYVITTSTSMRAIQKS 137 (457)
Q Consensus 91 ~y~~l~~~~~Gk~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 137 (457)
...+..+..+|+++..++.+...+..+++..+.+...++.+.....+
T Consensus 259 ~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 305 (444)
T 3gia_A 259 ALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD 305 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 56778888889888888888888888899888888888888887664
Done!