Query 012738
Match_columns 457
No_of_seqs 359 out of 1765
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 15:16:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012738.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012738hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z2q_A LM5-1; membrane protein 99.8 5.6E-21 1.9E-25 156.9 3.3 69 140-210 11-79 (84)
2 1x4u_A Zinc finger, FYVE domai 99.8 1.5E-20 5.1E-25 154.4 5.4 70 140-210 4-78 (84)
3 2yw8_A RUN and FYVE domain-con 99.8 3.4E-20 1.2E-24 151.6 4.1 67 140-210 9-75 (82)
4 3t7l_A Zinc finger FYVE domain 99.8 1.9E-20 6.6E-25 155.7 2.6 73 137-213 7-79 (90)
5 1vfy_A Phosphatidylinositol-3- 99.8 2.7E-20 9.1E-25 149.0 1.4 67 140-211 4-70 (73)
6 1joc_A EEA1, early endosomal a 99.8 1.6E-19 5.5E-24 158.8 3.5 65 141-209 60-124 (125)
7 1dvp_A HRS, hepatocyte growth 99.7 7E-18 2.4E-22 161.4 3.2 66 139-209 153-218 (220)
8 3zyq_A Hepatocyte growth facto 99.7 8.9E-18 3E-22 161.5 3.4 68 138-210 155-222 (226)
9 1wfk_A Zinc finger, FYVE domai 99.7 2.1E-17 7.3E-22 136.7 3.6 61 147-210 6-66 (88)
10 1y02_A CARP2, FYVE-ring finger 99.6 1.5E-16 5E-21 138.7 0.8 59 141-209 10-68 (120)
11 3mpx_A FYVE, rhogef and PH dom 99.6 1.3E-16 4.3E-21 165.5 0.0 71 137-210 362-432 (434)
12 2vrw_B P95VAV, VAV1, proto-onc 97.8 6.6E-06 2.3E-10 84.4 2.3 45 140-184 347-391 (406)
13 1zbd_B Rabphilin-3A; G protein 96.0 0.0036 1.2E-07 55.1 3.1 55 148-207 53-107 (134)
14 2zet_C Melanophilin; complex, 95.4 0.0049 1.7E-07 55.5 1.6 50 150-207 68-117 (153)
15 3ky9_A Proto-oncogene VAV; cal 94.8 0.011 3.8E-07 63.5 2.7 44 141-184 520-563 (587)
16 2csz_A Synaptotagmin-like prot 92.2 0.076 2.6E-06 42.2 2.6 50 150-208 25-74 (76)
17 1wff_A Riken cDNA 2810002D23 p 91.8 0.17 5.8E-06 41.0 4.4 31 148-181 23-53 (85)
18 1wfh_A Zinc finger (AN1-like) 90.4 0.19 6.6E-06 38.6 3.2 28 150-181 15-42 (64)
19 1wfp_A Zinc finger (AN1-like) 89.3 0.37 1.3E-05 38.0 4.2 29 149-181 24-52 (74)
20 1wfl_A Zinc finger protein 216 88.0 0.47 1.6E-05 37.4 3.9 28 150-181 25-52 (74)
21 1wg2_A Zinc finger (AN1-like) 85.9 0.56 1.9E-05 36.0 3.2 28 150-181 15-42 (64)
22 1z60_A TFIIH basal transcripti 82.4 0.14 4.9E-06 38.7 -1.4 30 151-182 16-45 (59)
23 1x4w_A Hypothetical protein FL 76.2 1.1 3.8E-05 34.7 1.8 32 148-181 13-45 (67)
24 2e72_A POGO transposable eleme 75.8 0.45 1.5E-05 34.4 -0.5 35 142-177 5-40 (49)
25 2ecm_A Ring finger and CHY zin 75.7 1.7 5.8E-05 30.7 2.7 50 149-208 4-53 (55)
26 2ect_A Ring finger protein 126 74.6 1.6 5.4E-05 33.4 2.4 50 150-210 15-64 (78)
27 2a20_A Regulating synaptic mem 72.8 2.4 8.1E-05 32.0 2.8 53 148-207 7-60 (62)
28 1bor_A Transcription factor PM 72.2 3.4 0.00012 29.8 3.6 45 148-209 4-48 (56)
29 3lrq_A E3 ubiquitin-protein li 70.9 1.1 3.9E-05 36.4 0.8 47 151-209 23-69 (100)
30 1iym_A EL5; ring-H2 finger, ub 70.7 2.7 9.4E-05 29.6 2.7 49 150-208 5-53 (55)
31 2yur_A Retinoblastoma-binding 70.3 1.2 4.2E-05 33.9 0.8 48 151-209 16-63 (74)
32 2jrp_A Putative cytoplasmic pr 69.8 3.6 0.00012 33.0 3.4 56 151-210 3-63 (81)
33 2ysl_A Tripartite motif-contai 69.6 1.8 6E-05 32.5 1.5 50 150-210 20-69 (73)
34 1twf_L ABC10-alpha, DNA-direct 68.8 1.9 6.6E-05 33.5 1.6 25 151-175 29-53 (70)
35 2kiz_A E3 ubiquitin-protein li 65.9 3.2 0.00011 30.8 2.3 51 149-210 13-63 (69)
36 1x4j_A Ring finger protein 38; 65.7 2.1 7.1E-05 32.6 1.2 51 149-210 22-72 (75)
37 1jm7_B BARD1, BRCA1-associated 61.5 4 0.00014 33.9 2.4 44 151-209 23-66 (117)
38 1e4u_A Transcriptional repress 61.0 3.2 0.00011 32.5 1.5 52 149-210 10-62 (78)
39 2ct2_A Tripartite motif protei 60.8 3 0.0001 32.3 1.4 53 150-209 15-67 (88)
40 1chc_A Equine herpes virus-1 r 60.4 4.3 0.00015 29.9 2.1 48 150-210 5-52 (68)
41 2egp_A Tripartite motif-contai 59.1 3.4 0.00012 31.4 1.4 54 150-210 12-65 (79)
42 2ecl_A Ring-box protein 2; RNF 58.9 4.9 0.00017 31.2 2.3 60 141-209 6-75 (81)
43 2djb_A Polycomb group ring fin 58.2 4.1 0.00014 30.6 1.7 48 150-210 15-62 (72)
44 2ysj_A Tripartite motif-contai 55.5 4 0.00014 29.7 1.2 31 150-185 20-50 (63)
45 2d8t_A Dactylidin, ring finger 55.2 2.6 8.8E-05 31.7 0.1 46 150-209 15-60 (71)
46 2ckl_B Ubiquitin ligase protei 54.4 3.2 0.00011 36.6 0.6 48 151-210 55-102 (165)
47 2ecv_A Tripartite motif-contai 52.0 7.1 0.00024 29.7 2.2 53 150-210 19-71 (85)
48 2l0b_A E3 ubiquitin-protein li 51.8 2 6.8E-05 34.3 -1.1 50 149-209 39-88 (91)
49 2csy_A Zinc finger protein 183 50.9 5.5 0.00019 30.6 1.4 46 150-209 15-60 (81)
50 2y43_A E3 ubiquitin-protein li 50.7 4.4 0.00015 32.4 0.8 47 151-210 23-69 (99)
51 2ckl_A Polycomb group ring fin 49.9 4.2 0.00014 33.1 0.6 47 151-210 16-62 (108)
52 2ep4_A Ring finger protein 24; 49.7 5.7 0.00019 29.8 1.2 51 150-211 15-65 (74)
53 2ecy_A TNF receptor-associated 49.6 2.1 7.1E-05 31.7 -1.3 48 150-210 15-62 (66)
54 3fl2_A E3 ubiquitin-protein li 49.2 2.8 9.7E-05 35.1 -0.6 47 151-210 53-99 (124)
55 1x4v_A Hypothetical protein LO 48.1 12 0.00041 28.4 2.8 27 150-180 12-40 (63)
56 2ecj_A Tripartite motif-contai 46.9 9.4 0.00032 26.9 2.0 31 150-185 15-45 (58)
57 2jne_A Hypothetical protein YF 45.8 11 0.00038 31.2 2.4 25 151-176 33-57 (101)
58 3ztg_A E3 ubiquitin-protein li 45.7 7.7 0.00026 30.4 1.5 48 150-208 13-60 (92)
59 4gzn_C ZFP-57, zinc finger pro 45.7 7.5 0.00026 28.6 1.3 11 151-161 5-15 (60)
60 2lv2_A Insulinoma-associated p 45.0 12 0.00042 29.4 2.6 12 150-161 28-39 (85)
61 1wim_A KIAA0161 protein; ring 44.2 6.2 0.00021 31.4 0.7 55 150-207 5-61 (94)
62 3l11_A E3 ubiquitin-protein li 43.8 5.9 0.0002 32.6 0.5 47 151-210 16-62 (115)
63 2ea6_A Ring finger protein 4; 43.8 4.6 0.00016 29.6 -0.1 51 150-209 15-67 (69)
64 3ng2_A RNF4, snurf, ring finge 43.4 4.5 0.00015 30.0 -0.2 53 149-210 9-63 (71)
65 1jm7_A BRCA1, breast cancer ty 43.3 7 0.00024 31.7 0.9 48 151-209 22-69 (112)
66 1v87_A Deltex protein 2; ring- 42.5 5.5 0.00019 32.6 0.1 56 151-210 26-94 (114)
67 2lce_A B-cell lymphoma 6 prote 42.3 17 0.00058 26.5 2.9 12 150-161 17-28 (74)
68 1wys_A Riken cDNA 2310008M20 p 42.1 15 0.00053 28.8 2.7 27 151-181 15-43 (75)
69 2xeu_A Ring finger protein 4; 41.9 4.1 0.00014 29.4 -0.7 52 150-210 3-56 (64)
70 2ecn_A Ring finger protein 141 41.1 8.1 0.00028 28.6 0.9 46 150-210 15-60 (70)
71 3uk3_C Zinc finger protein 217 39.5 15 0.00051 25.1 2.1 11 151-161 5-15 (57)
72 1t1h_A Gspef-atpub14, armadill 39.2 8.8 0.0003 29.0 0.9 47 150-209 8-54 (78)
73 2ecw_A Tripartite motif-contai 38.7 7.9 0.00027 29.4 0.5 53 150-210 19-71 (85)
74 2y1n_A E3 ubiquitin-protein li 38.4 5 0.00017 41.0 -0.9 48 151-211 333-380 (389)
75 3h0g_L DNA-directed RNA polyme 37.7 19 0.00066 27.3 2.5 26 150-175 21-46 (63)
76 3cc2_Z 50S ribosomal protein L 36.4 8.8 0.0003 32.7 0.5 31 150-180 60-91 (116)
77 1bbo_A Human enhancer-binding 35.4 19 0.00066 24.5 2.1 10 152-161 3-12 (57)
78 4a0k_B E3 ubiquitin-protein li 34.8 8.9 0.00031 32.5 0.2 58 141-207 39-109 (117)
79 4ayc_A E3 ubiquitin-protein li 34.8 9 0.00031 32.7 0.3 46 151-210 54-99 (138)
80 3vk6_A E3 ubiquitin-protein li 34.3 5 0.00017 33.4 -1.4 54 151-216 2-55 (101)
81 2adr_A ADR1; transcription reg 34.2 19 0.00066 24.8 2.0 10 152-161 4-13 (60)
82 2lx0_A Membrane fusion protein 33.9 14 0.00048 23.6 1.0 16 63-78 2-17 (32)
83 3j20_Y 30S ribosomal protein S 33.9 14 0.00049 26.6 1.2 27 151-177 20-47 (50)
84 2c2l_A CHIP, carboxy terminus 33.8 25 0.00084 32.8 3.2 48 150-210 208-255 (281)
85 1wd2_A Ariadne-1 protein homol 33.1 34 0.0012 25.4 3.2 35 150-184 6-43 (60)
86 2ayj_A 50S ribosomal protein L 32.5 15 0.00052 27.3 1.1 21 151-174 20-40 (56)
87 1vd4_A Transcription initiatio 32.0 9.5 0.00032 27.4 -0.1 11 151-161 15-25 (62)
88 3t6p_A Baculoviral IAP repeat- 31.0 24 0.00081 35.3 2.7 43 151-211 296-339 (345)
89 1g25_A CDK-activating kinase a 30.8 9.1 0.00031 28.0 -0.3 51 151-210 4-55 (65)
90 1wfe_A Riken cDNA 2310008M20 p 30.6 19 0.00064 29.0 1.5 28 150-181 25-54 (86)
91 2cot_A Zinc finger protein 435 29.7 61 0.0021 23.5 4.3 12 150-161 18-29 (77)
92 2ct7_A Ring finger protein 31; 29.6 21 0.0007 28.2 1.6 32 152-183 27-59 (86)
93 1x5w_A Zinc finger protein 64, 29.4 20 0.00069 25.7 1.4 11 151-161 10-20 (70)
94 3htk_C E3 SUMO-protein ligase 29.3 12 0.00042 36.3 0.2 50 150-210 181-232 (267)
95 2eps_A POZ-, at HOOK-, and zin 28.9 20 0.0007 24.6 1.3 11 151-161 13-23 (54)
96 1z6u_A NP95-like ring finger p 28.9 14 0.00048 32.2 0.5 47 151-210 79-125 (150)
97 3knv_A TNF receptor-associated 28.7 15 0.00051 31.8 0.6 45 151-208 32-76 (141)
98 1x6e_A Zinc finger protein 24; 28.6 22 0.00077 25.7 1.5 11 151-161 15-25 (72)
99 2gmg_A Hypothetical protein PF 28.1 23 0.00079 29.6 1.6 10 151-160 68-77 (105)
100 2jmo_A Parkin; IBR, E3 ligase, 28.0 57 0.002 25.3 3.9 34 150-183 25-66 (80)
101 1gnf_A Transcription factor GA 27.5 27 0.00092 24.8 1.7 29 150-182 4-32 (46)
102 2elu_A Zinc finger protein 406 26.7 15 0.00051 24.3 0.2 9 167-175 9-17 (37)
103 2gqj_A Zinc finger protein KIA 26.4 19 0.00063 28.2 0.8 11 151-161 25-35 (98)
104 4ic3_A E3 ubiquitin-protein li 26.0 13 0.00046 28.1 -0.1 43 151-211 25-68 (74)
105 2ctd_A Zinc finger protein 512 25.9 21 0.00071 28.2 1.0 11 151-161 35-46 (96)
106 1wil_A KIAA1045 protein; ring 25.7 32 0.0011 27.7 2.0 31 151-184 16-46 (89)
107 2fiy_A Protein FDHE homolog; F 25.7 33 0.0011 33.9 2.5 63 149-211 181-266 (309)
108 2ecg_A Baculoviral IAP repeat- 24.8 17 0.00057 27.6 0.2 42 151-210 26-68 (75)
109 2d9h_A Zinc finger protein 692 24.5 24 0.00083 25.8 1.1 10 152-161 9-18 (78)
110 3k7a_M Transcription initiatio 24.3 40 0.0014 33.4 2.9 41 137-177 7-52 (345)
111 2yu4_A E3 SUMO-protein ligase 23.9 21 0.00071 28.4 0.6 31 151-185 8-38 (94)
112 2lcq_A Putative toxin VAPC6; P 23.9 26 0.00089 30.8 1.3 11 151-161 133-143 (165)
113 3jyw_9 60S ribosomal protein L 23.9 36 0.0012 26.5 1.9 27 150-179 26-56 (72)
114 2m0e_A Zinc finger and BTB dom 23.5 29 0.001 19.4 1.1 10 168-177 3-12 (29)
115 3j21_i 50S ribosomal protein L 23.0 29 0.001 27.8 1.3 28 150-180 35-66 (83)
116 1weo_A Cellulose synthase, cat 22.9 18 0.00061 29.5 0.0 61 145-213 11-73 (93)
117 3iz5_m 60S ribosomal protein L 22.5 36 0.0012 27.8 1.8 27 151-180 37-67 (92)
118 3hct_A TNF receptor-associated 22.3 22 0.00076 29.3 0.5 47 151-210 19-65 (118)
119 1pft_A TFIIB, PFTFIIBN; N-term 22.0 37 0.0013 23.8 1.6 7 152-158 7-13 (50)
120 3j21_g 50S ribosomal protein L 21.8 36 0.0012 24.7 1.5 23 151-176 15-37 (51)
121 2kvh_A Zinc finger and BTB dom 21.7 34 0.0012 19.2 1.1 12 166-177 2-13 (27)
122 3dpl_R Ring-box protein 1; ubi 21.2 25 0.00086 29.0 0.6 59 141-208 28-99 (106)
123 1ffk_W Ribosomal protein L37AE 21.2 31 0.001 27.0 1.0 29 149-180 26-58 (73)
124 2d8v_A Zinc finger FYVE domain 21.1 49 0.0017 25.4 2.1 28 150-183 8-36 (67)
125 2epr_A POZ-, at HOOK-, and zin 21.1 30 0.001 22.9 0.9 11 151-161 13-23 (48)
126 1rmd_A RAG1; V(D)J recombinati 20.7 25 0.00085 28.7 0.5 47 151-210 24-70 (116)
127 2kvf_A Zinc finger and BTB dom 20.4 38 0.0013 19.0 1.2 13 166-178 2-14 (28)
128 1ard_A Yeast transcription fac 20.2 34 0.0012 19.2 0.9 10 168-177 3-12 (29)
129 2kdx_A HYPA, hydrogenase/ureas 20.1 40 0.0014 28.2 1.6 10 152-161 75-84 (119)
No 1
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=99.81 E-value=5.6e-21 Score=156.92 Aligned_cols=69 Identities=41% Similarity=0.838 Sum_probs=61.8
Q ss_pred CCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 140 ~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ....+|+|||+.||..|+.
T Consensus 11 ~~~~W~pd~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~ 79 (84)
T 1z2q_A 11 SKGYWQEDEDAPACNGCGCVFT-TTVRRHHCRNCGYVLCGDCSRHRAAIPM-RGITEPERVCDACYLALRS 79 (84)
T ss_dssp CCSCCCCTTTCCBCTTTCCBCC-TTSCCEECTTTCCEECTGGGCCEEEETT-TTEEEEEECCHHHHHHHHT
T ss_pred CCCccccCCCCCCCcCcCCccc-cchhcccccCCCcEEChHHhCCeEeccC-CCCCCCCEECHHHHHHHhh
Confidence 3689999999999999999999 6689999999999999999999998884 3346899999999998864
No 2
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-20 Score=154.36 Aligned_cols=70 Identities=24% Similarity=0.541 Sum_probs=60.6
Q ss_pred CCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCC-----CCCceeecccccccccc
Q 012738 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFR-----ERNPQRVCDACYDRLDP 210 (457)
Q Consensus 140 ~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~-----~~~p~RVC~~C~~~l~~ 210 (457)
..+.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++..+|.... ..+++|||+.||..|..
T Consensus 4 ~~~~W~pd~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~ 78 (84)
T 1x4u_A 4 GSSGRYPTNNFGNCTGCSATFS-VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSK 78 (84)
T ss_dssp CCCCSCSCCCCSSCSSSCCCCC-SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHS
T ss_pred CCCccccCCCCCcCcCcCCccc-cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhc
Confidence 3679999999999999999999 6789999999999999999999988873211 14789999999998864
No 3
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=99.79 E-value=3.4e-20 Score=151.57 Aligned_cols=67 Identities=40% Similarity=0.921 Sum_probs=56.2
Q ss_pred CCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 140 ~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ..+|+|||+.||..|..
T Consensus 9 ~~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~ 75 (82)
T 2yw8_A 9 KGHAWLKDDEATHCRQCEKEFS-ISRRKHHCRNCGHIFCNTCSSNELALPS---YPKPVRVCDSCHTLLLQ 75 (82)
T ss_dssp ------CCCCCCBCTTTCCBCB-TTBCCEECTTTCCEECSGGGCEEECCTT---CSSCEEECHHHHHHTTC
T ss_pred CCCccccCccCCcccCcCCccc-CccccccCCCCCCEEChHHhCCeeecCC---CCCcCEECHHHHHHHHH
Confidence 3589999999999999999999 6789999999999999999999988873 36899999999998864
No 4
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=99.79 E-value=1.9e-20 Score=155.66 Aligned_cols=73 Identities=42% Similarity=1.013 Sum_probs=64.2
Q ss_pred cccCCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccccccc
Q 012738 137 LEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQG 213 (457)
Q Consensus 137 l~~~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q~ 213 (457)
++.++|.|++|+++..|+.|+++|+ +++||||||+||++||..|++++..+|. ..+|+|||+.||+.|+..+.
T Consensus 7 l~~~~p~W~~d~~~~~C~~C~~~F~-~~~RrhhCr~CG~v~C~~Cs~~~~~l~~---~~~~~RVC~~C~~~l~~~~~ 79 (90)
T 3t7l_A 7 LGQKQPTWVPDSEAPNCMNCQVKFT-FTKRRHHCRACGKVFCGVCCNRKCKLQY---LEKEARVCVVCYETISKAQA 79 (90)
T ss_dssp TTTSCCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEEEETT---TTEEEEECHHHHHHHHHHC-
T ss_pred cCCCCCcCcccccCCcCcCCCCccc-chhhCccccCCCCEECCcccCCeeecCC---CCCCCeECHHHHHHHHHHhh
Confidence 4566899999999999999999999 6789999999999999999999988873 25899999999999876543
No 5
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=99.78 E-value=2.7e-20 Score=148.98 Aligned_cols=67 Identities=37% Similarity=0.958 Sum_probs=56.3
Q ss_pred CCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccccc
Q 012738 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (457)
Q Consensus 140 ~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (457)
.+|.|++| ..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ++..+|+|||+.||..|+.+
T Consensus 4 ~~p~W~~~---~~C~~C~~~F~-~~~RrHHCR~CG~v~C~~Cs~~~~~lp~-~~~~~~~RVC~~C~~~l~~i 70 (73)
T 1vfy_A 4 TPADWIDS---DACMICSKKFS-LLNRKHHCRSCGGVFCQEHSSNSIPLPD-LGIYEPVRVCDSCFEDYEFI 70 (73)
T ss_dssp ---CCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECGGGSCEEEEEGG-GTEEEEEEECHHHHHHHHHH
T ss_pred CCCcCccC---CcccCCCCccC-CccccccCCCCCEEEcccccCCeEEccc-CCCCCCCEECHHHHHHHHHH
Confidence 48999997 58999999999 6789999999999999999999988883 34468999999999987543
No 6
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=99.76 E-value=1.6e-19 Score=158.80 Aligned_cols=65 Identities=42% Similarity=1.014 Sum_probs=59.7
Q ss_pred CCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 141 ~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
.|.|+||+++..|+.|+++|+ +++||||||+||+|||+.||+++..+|. ...|+|||+.||..|+
T Consensus 60 ~~~W~~d~~~~~C~~C~~~Fs-~~~RrHHCR~CG~vfC~~Cs~~~~~~p~---~~~p~RVC~~C~~~l~ 124 (125)
T 1joc_A 60 NRKWAEDNEVQNCMACGKGFS-VTVRRHHCRQCGNIFCAECSAKNALTPS---SKKPVRVCDACFNDLQ 124 (125)
T ss_dssp HCCCCCGGGCCBCTTTCCBCC-SSSCCEECTTTCCEECGGGSCEEECCTT---CSSCEEECHHHHHHTT
T ss_pred CCccccCCCCCCCcCcCCccc-cccccccCCCCCeEEChHHhCCccccCC---CCCCCEeCHHHHHHhc
Confidence 689999999999999999999 6789999999999999999999988873 3689999999999874
No 7
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=99.68 E-value=7e-18 Score=161.41 Aligned_cols=66 Identities=42% Similarity=1.046 Sum_probs=58.4
Q ss_pred cCCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 139 AEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 139 ~~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
..+|.|+++ ..|+.|+++|+ +++||||||+||++||+.||+++..+| .++..+|+|||+.||..|+
T Consensus 153 ~~~~~W~~~---~~C~~C~~~F~-~~~rrhhCr~CG~v~C~~Cs~~~~~~~-~~~~~~~~RvC~~C~~~l~ 218 (220)
T 1dvp_A 153 DTAPNWADG---RVCHRCRVEFT-FTNRKHHCRNCGQVFCGQCTAKQCPLP-KYGIEKEVRVCDGCFAALQ 218 (220)
T ss_dssp SCCCCCCCC---SBCTTTCCBCC-SSSCCEECTTTCCEECSTTSCEEEEEG-GGTEEEEEEECHHHHHHHH
T ss_pred cccccCCCC---CccCCCCCccC-CcccccccCCcCCEEChHHhCCeeecC-cCCCCCCCEeCHHHHHHHh
Confidence 458999986 69999999999 678999999999999999999998888 3455789999999998774
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=99.68 E-value=8.9e-18 Score=161.55 Aligned_cols=68 Identities=32% Similarity=0.945 Sum_probs=59.6
Q ss_pred ccCCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 138 EAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 138 ~~~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...+|.|+++ ..|+.|+++|+ +++||||||+||++||+.||+++..+| .++...|+|||+.||+.|+.
T Consensus 155 ~~~~p~W~~~---~~C~~C~~~F~-~~~RrhHCR~CG~v~C~~Cs~~~~~~p-~~~~~~~~RVC~~C~~~l~~ 222 (226)
T 3zyq_A 155 AERAPDWVDA---EECHRCRVQFG-VMTRKHHCRACGQIFCGKCSSKYSTIP-KFGIEKEVRVCEPCYEQLNR 222 (226)
T ss_dssp CCCCCCCCCC---SBCTTTCCBCB-TTBCCEECTTTCCEECTTTCCEEEEEG-GGTEEEEEEECHHHHHHHCC
T ss_pred cccccccccC---CCCcCcCCCCC-ccccccccCCCcCEeChhhcCCcccCC-CCCCCCCCEeCHHHHHHhhh
Confidence 4558999986 58999999999 678999999999999999999998888 34456899999999998864
No 9
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=99.66 E-value=2.1e-17 Score=136.74 Aligned_cols=61 Identities=30% Similarity=0.645 Sum_probs=53.3
Q ss_pred CCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 147 DSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 147 d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
+.++..|+.|+++|+ +++||||||+||+|||+.|++++..+|. + +.+|+|||+.||..|..
T Consensus 6 ~~~~~~C~~C~~~F~-~~~RrHHCR~CG~vfC~~Cs~~~~~lp~-~-g~~~~RVC~~C~~~l~~ 66 (88)
T 1wfk_A 6 SGMESRCYGCAVKFT-LFKKEYGCKNCGRAFCNGCLSFSALVPR-A-GNTQQKVCKQCHTILTR 66 (88)
T ss_dssp CCCCSBCTTTCCBCC-SSSCEEECSSSCCEEETTTSCEEEEETT-T-TSEEEEECHHHHHHHHH
T ss_pred CCcCCCCcCcCCccc-CccccccCCCCCCEEChhHcCCceeccc-c-CCCcCEECHHHHHHHHh
Confidence 346789999999999 6689999999999999999999998883 2 25799999999998864
No 10
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=99.59 E-value=1.5e-16 Score=138.68 Aligned_cols=59 Identities=24% Similarity=0.418 Sum_probs=42.5
Q ss_pred CCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 141 ~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
.+.|.||.++..|+.|+.+|+ +++||||||+||++||+.||+++.. ++|||+.||..+.
T Consensus 10 ~~~~~Pd~~~~~C~~C~~~Fs-~~~RkHHCR~CG~ifC~~Cs~~~~~---------~vRVC~~C~~~~~ 68 (120)
T 1y02_A 10 SSFPSPTGLEPSCKSCGAHFA-NTARKQTCLDCKKNFCMTCSSQVGN---------GPRLCLLCQRFRA 68 (120)
T ss_dssp ----------CCCTTTCCCCS-SGGGCEECTTTCCEECGGGEEC-------------CCEEHHHHHHHH
T ss_pred ccCCcCccccCcccCcCCccc-cccccccCCCCCCeeCHHHhCCCCC---------CceECHHHHHHHh
Confidence 456889999999999999999 6789999999999999999988642 4999999999764
No 11
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=1.3e-16 Score=165.51 Aligned_cols=71 Identities=35% Similarity=0.892 Sum_probs=0.0
Q ss_pred cccCCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 137 LEAEPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 137 l~~~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
++..+|.|+||.++..|+.|+.+|+ +++||||||+||++||..||+++..+| +...+|+|||+.||..|..
T Consensus 362 ~~~~~p~w~~~~~~~~c~~c~~~f~-~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~--~~~~~~~rvC~~C~~~l~~ 432 (434)
T 3mpx_A 362 LGERPPTLVPVTHVMMCMNCGCDFS-LTLRRHHCHACGKIVCRNCSRNKYPLK--YLKDRMAKVCDGCFGELKK 432 (434)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCcCCCcccCCcCCCcCCCCC-CcchhhhcccCcCEeehhhCCCeeeCC--CCCCCcCEecHHHHHHHHh
Confidence 3446899999999999999999999 678999999999999999999987776 4457899999999998853
No 12
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=97.78 E-value=6.6e-06 Score=84.40 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=40.6
Q ss_pred CCCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCc
Q 012738 140 EPPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (457)
Q Consensus 140 ~~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~ 184 (457)
..+.|.++...+.|+.|+..|..+++|+||||.||.++|..|+..
T Consensus 347 h~f~~~~~~~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 347 HDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp CCEEEECCSSCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCccccCCCCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 456799999999999999999657889999999999999999864
No 13
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=95.95 E-value=0.0036 Score=55.15 Aligned_cols=55 Identities=18% Similarity=0.511 Sum_probs=44.9
Q ss_pred CCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccc
Q 012738 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (457)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (457)
.....|..|+++|+++..+.|-|..|.+-||..|.... + .....+.=+|..|...
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~---~--~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVET---S--NNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEEC---C--CSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCCcc---C--CCCCccceechhhHHH
Confidence 34689999999998777889999999999999998653 2 1235678999999874
No 14
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=95.36 E-value=0.0049 Score=55.53 Aligned_cols=50 Identities=28% Similarity=0.738 Sum_probs=43.1
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (457)
...|..|.++|+++..+.+-|..|.+-||..|... +| ....=+|..|+..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~---~~-----~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA---HP-----EEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEEC---CS-----SSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccccc---cC-----CCCcEeeHHHHHH
Confidence 58999999999988899999999999999999843 22 3578899999875
No 15
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=94.81 E-value=0.011 Score=63.45 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=37.7
Q ss_pred CCCccCCCCCCcccccCccCCCCcccccccccCCceEeCCCCCc
Q 012738 141 PPEWLPDSSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (457)
Q Consensus 141 ~p~Wv~d~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~ 184 (457)
...|.+....+.|..|+..|..++++.|||+.||.++|..|...
T Consensus 520 ~F~~~~~~~~t~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 520 DFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGR 563 (587)
T ss_dssp CEEEECCSSCCBCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred ceeEEeCCCCcccccccccccccccCCcCCCCCCCccchhhhhc
Confidence 34567778889999999998447889999999999999999865
No 16
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.16 E-value=0.076 Score=42.21 Aligned_cols=50 Identities=24% Similarity=0.601 Sum_probs=41.8
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (457)
...|..|+.+|++|+.|---|+.|-+-||.+|--.. ..+.=.|..|++..
T Consensus 25 ~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~---------~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 25 DRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE---------SNGTWRCKVCSGPS 74 (76)
T ss_dssp CCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC---------STTCEEEHHHHSSC
T ss_pred ccchhhhCccccccccCCCcCcccChhhcccccccC---------CCCCEEEeeCchhh
Confidence 578999999999999999999999999999995321 12678899998764
No 17
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=91.85 E-value=0.17 Score=41.03 Aligned_cols=31 Identities=29% Similarity=0.701 Sum_probs=24.8
Q ss_pred CCCCcccccCccCCCCcccccccccCCceEeCCC
Q 012738 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
.....|..|+++.. |+. ..+|| ||.+||..+
T Consensus 23 ~~~~rC~~C~kkvg-l~~-~f~Cr-Cg~~FC~~H 53 (85)
T 1wff_A 23 KIMKHCFLCGKKTG-LAT-SFECR-CGNNFCASH 53 (85)
T ss_dssp CCCCBCSSSCCBCS-SSS-CEECT-TCCEECTTT
T ss_pred ccCccchhhCCeec-ccC-CeEcC-CCCEecccC
Confidence 34578999999988 432 59998 999998875
No 18
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=90.38 E-value=0.19 Score=38.57 Aligned_cols=28 Identities=36% Similarity=0.818 Sum_probs=23.3
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCC
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
...|..|+++.. |+ ..+|| ||..||..+
T Consensus 15 ~~rC~~C~kkvg-l~--~f~Cr-Cg~~FC~~H 42 (64)
T 1wfh_A 15 PNRCTVCRKRVG-LT--GFMCR-CGTTFCGSH 42 (64)
T ss_dssp CCCCTTTCCCCC-TT--CEECS-SSCEECTTT
T ss_pred CCcChhhCCccC-cc--CEEee-cCCEecccc
Confidence 468999999988 44 58996 999999875
No 19
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=89.35 E-value=0.37 Score=37.98 Aligned_cols=29 Identities=34% Similarity=0.933 Sum_probs=23.8
Q ss_pred CCCcccccCccCCCCcccccccccCCceEeCCC
Q 012738 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
....|..|+++.. |+ ..+|| ||..||..+
T Consensus 24 ~~~RC~~C~kkvg-L~--~f~Cr-Cg~~FCs~H 52 (74)
T 1wfp_A 24 TATRCLSCNKKVG-VT--GFKCR-CGSTFCGTH 52 (74)
T ss_dssp CCCBCSSSCCBCT-TT--CEECT-TSCEECTTT
T ss_pred cCccchhhcCccc-cc--ceEec-cCCEecccc
Confidence 3478999999988 44 58995 999998875
No 20
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=88.01 E-value=0.47 Score=37.43 Aligned_cols=28 Identities=36% Similarity=0.967 Sum_probs=23.4
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCC
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
...|..|+++.. |+ ..+|| ||..||..+
T Consensus 25 ~nRC~~CrKkvg-L~--gf~Cr-Cg~~FCs~H 52 (74)
T 1wfl_A 25 KNRCFMCRKKVG-LT--GFDCR-CGNLFCGLH 52 (74)
T ss_dssp TTBCSSSCCBCG-GG--CEECT-TSCEECSSS
T ss_pred CCcChhhCCccc-cc--CeecC-CCCEechhc
Confidence 468999999988 44 48999 999998865
No 21
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=85.90 E-value=0.56 Score=35.99 Aligned_cols=28 Identities=25% Similarity=0.763 Sum_probs=23.1
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCC
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
...|..|+++.. |+ ..+| .||..||..+
T Consensus 15 ~~rC~~C~kkvg-l~--~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 15 NNRCFSCNKKVG-VM--GFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCSCTTTCCCCT-TS--CEEC-TTSCEECSSS
T ss_pred CCcChhhCCccc-cc--CeEe-ecCCEecccC
Confidence 468999999988 44 5899 5999999875
No 22
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=82.38 E-value=0.14 Score=38.72 Aligned_cols=30 Identities=27% Similarity=0.743 Sum_probs=25.0
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCC
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICT 182 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs 182 (457)
..|..|+++|.. ..+..|..|..+||-.|=
T Consensus 16 ~~C~~C~~~~~~--~~~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKD--QHVYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTT--SEEECCTTTTCCBCHHHH
T ss_pred CcccccCcccCC--CccEECCccCcCcccchh
Confidence 569999999962 235889999999999984
No 23
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.20 E-value=1.1 Score=34.69 Aligned_cols=32 Identities=34% Similarity=0.770 Sum_probs=24.2
Q ss_pred CCCCcccccCccCCCCccc-ccccccCCceEeCCC
Q 012738 148 SSTTVCMQCTAPFTALTRG-RHHCRFCGGVFCRIC 181 (457)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rR-rHHCR~CG~vfC~~C 181 (457)
.....|..|+++-. |+.. -.+| .||.+||..+
T Consensus 13 ~~~~rC~~C~kk~g-L~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 13 KSRRRCFQCQTKLE-LVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp SCTTBCSSSCCBCC-HHHHHHHCC-SSSCCCCTTT
T ss_pred ccCCcchhhCCeec-ccccCceEe-cCCCEehhcc
Confidence 34578999999988 5311 2789 7999998875
No 24
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.79 E-value=0.45 Score=34.38 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=26.7
Q ss_pred CCccCCCCCCcccccCccCCCC-cccccccccCCceE
Q 012738 142 PEWLPDSSTTVCMQCTAPFTAL-TRGRHHCRFCGGVF 177 (457)
Q Consensus 142 p~Wv~d~~~~~C~~C~~~F~~l-~rRrHHCR~CG~vf 177 (457)
+.|... ....|..|+..|+.+ -.|+|-|+.||.++
T Consensus 5 ~~~~~~-~~~~CPrCn~~f~~~~sLr~HmkycCp~~v 40 (49)
T 2e72_A 5 SSGQDG-GRKICPRCNAQFRVTEALRGHMCYCCPEMV 40 (49)
T ss_dssp SSSCCS-SCCCCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred cccccC-CceeCCcccccccchHHHHhhhhhcCcchh
Confidence 456554 678999999999842 24689999999875
No 25
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=75.71 E-value=1.7 Score=30.68 Aligned_cols=50 Identities=20% Similarity=0.367 Sum_probs=32.9
Q ss_pred CCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccc
Q 012738 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (457)
+...|.+|...|.. ..+......||++||..|....... ...|-.|...+
T Consensus 4 ~~~~C~IC~~~~~~-~~~~~~~~~CgH~fc~~Ci~~~~~~---------~~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT-SRVVAHVLPCGHLLHRTCYEEMLKE---------GYRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT-TTSCEEECTTSCEEETTHHHHHHHH---------TCCCTTSCCSS
T ss_pred CCCcCcccChhhcC-CCcCeEecCCCCcccHHHHHHHHHc---------CCcCCCCCCcC
Confidence 34689999998852 2234555679999999998654211 15677776544
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.64 E-value=1.6 Score=33.38 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=33.5
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|.. . ....--.||++||..|...... ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~-~-~~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 15 GLECPVCKEDYAL-G-ESVRQLPCNHLFHDSCIVPWLE---------QHDSCPVCRKSLTG 64 (78)
T ss_dssp SCCCTTTTSCCCT-T-SCEEECTTSCEEETTTTHHHHT---------TTCSCTTTCCCCCC
T ss_pred CCCCeeCCccccC-C-CCEEEeCCCCeecHHHHHHHHH---------cCCcCcCcCCccCC
Confidence 4679999998862 1 1222236999999999865421 12578888877754
No 27
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=72.76 E-value=2.4 Score=32.00 Aligned_cols=53 Identities=26% Similarity=0.663 Sum_probs=39.1
Q ss_pred CCCCcccccCc-cCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccc
Q 012738 148 SSTTVCMQCTA-PFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (457)
Q Consensus 148 ~~~~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (457)
.+...|.+|.+ +|.- . -=|.|..|-.-||..|.-+. .+ ..++..-||..|..+
T Consensus 7 ~d~~~C~iC~KTKFAD-G-~Gh~C~yCk~r~CaRCGg~v-~l----r~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD-G-CGHNCSYCQTKFCARCGGRV-SL----RSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCS-S-CCEEBTTTCCEECTTSEEEE-ES----STTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceecc-C-CCccccccCCeeecccCCEe-ee----cCCeEEEEehhhhhc
Confidence 34678999998 5642 2 25999999999999998653 33 236778899998653
No 28
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=72.20 E-value=3.4 Score=29.78 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 148 SSTTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 148 ~~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
.+...|.+|...|.. ..--.||+.||..|... ....|-.|...+.
T Consensus 4 ~~~~~C~IC~~~~~~-----p~~l~CgH~fC~~Ci~~------------~~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-----PKLLPCLHTLCSGCLEA------------SGMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC-----CSCSTTSCCSBTTTCSS------------SSSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC-----eEEcCCCCcccHHHHcc------------CCCCCCcCCcEee
Confidence 345679999987762 12246999999999754 1345667766553
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=70.89 E-value=1.1 Score=36.35 Aligned_cols=47 Identities=19% Similarity=0.526 Sum_probs=34.4
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
..|.+|...|. ....|-.||++||..|....... ....|-.|...+.
T Consensus 23 ~~C~IC~~~~~----~p~~~~~CgH~FC~~Ci~~~~~~--------~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR----DARLCPHCSKLCCFSCIRRWLTE--------QRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHHHH--------TCSBCTTTCCBCC
T ss_pred CCCccCCcccc----CccccCCCCChhhHHHHHHHHHH--------CcCCCCCCCCcCC
Confidence 57999998776 35667899999999997654211 1167888887764
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=70.73 E-value=2.7 Score=29.62 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=30.9
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (457)
...|.+|...|.. ..+-.....||++||..|..... +....|-.|...+
T Consensus 5 ~~~C~IC~~~~~~-~~~~~~~~~C~H~f~~~Ci~~w~---------~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED-GEEARFLPRCGHGFHAECVDMWL---------GSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT-TSCCEECSSSCCEECTTHHHHTT---------TTCCSCSSSCCCS
T ss_pred CCcCccCCccccC-CCceEECCCCCCcccHHHHHHHH---------HcCCcCcCCCCEe
Confidence 4679999998873 21122233599999999975431 1134577776543
No 31
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=70.32 E-value=1.2 Score=33.95 Aligned_cols=48 Identities=21% Similarity=0.544 Sum_probs=31.5
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
..|.+|...|.. ...-..||++||..|....... ...+.|-.|...+.
T Consensus 16 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 16 LLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQNDV 63 (74)
T ss_dssp GSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHH-------SSSSCCSSSCCSSC
T ss_pred CCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHh-------cCCCcCCCCCCcCC
Confidence 579999887762 2333449999999997654221 12457888877543
No 32
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=69.78 E-value=3.6 Score=32.98 Aligned_cols=56 Identities=16% Similarity=0.375 Sum_probs=34.1
Q ss_pred CcccccCccCCCCcccccccccCCce-----EeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGV-----FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-----fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|+.|+.+.. ...+.+||..|+.- ||..|-..-..++.- +.-.--|..|.+.+++
T Consensus 3 ~~CP~C~~~l~-~~~~~~~C~~C~~~~~~~afCPeCgq~Le~lkAC---GA~~yFC~~C~~LiSk 63 (81)
T 2jrp_A 3 ITCPVCHHALE-RNGDTAHCETCAKDFSLQALCPDCRQPLQVLKAC---GAVDYFCQNGHGLISK 63 (81)
T ss_dssp CCCSSSCSCCE-ECSSEEECTTTCCEEEEEEECSSSCSCCCEEEET---TEEEECCTTTTCCCCT
T ss_pred CCCCCCCCccc-cCCCceECccccccCCCcccCcchhhHHHHHHhc---CCcCeeeccCCCEeec
Confidence 46888888877 44567788888864 677775433233211 1225566666666554
No 33
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.59 E-value=1.8 Score=32.55 Aligned_cols=50 Identities=18% Similarity=0.319 Sum_probs=33.5
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|..- .. -.||++||..|...... .....+.|-.|...+..
T Consensus 20 ~~~C~IC~~~~~~~----~~-~~CgH~fC~~Ci~~~~~------~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQKP----VT-IDCGHNFCLKCITQIGE------TSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCSSE----EE-CTTCCEEEHHHHHHHCS------SSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccCCe----EE-cCCCChhhHHHHHHHHH------cCCCCCCCCCCCCcCCc
Confidence 46799999977621 11 27999999999865421 11345678888776643
No 34
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=68.81 E-value=1.9 Score=33.54 Aligned_cols=25 Identities=20% Similarity=0.687 Sum_probs=18.4
Q ss_pred CcccccCccCCCCcccccccccCCc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGG 175 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (457)
-.|..|+..|...-.-.-||+.||.
T Consensus 29 Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTTSTTCCSSSCC
T ss_pred EECCCCCCcceeCCCCCccCCCCCc
Confidence 5799999998843333567888887
No 35
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=65.94 E-value=3.2 Score=30.80 Aligned_cols=51 Identities=14% Similarity=0.391 Sum_probs=34.0
Q ss_pred CCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
....|.+|...|.. ......-.||++||..|....... .+.|-.|...+..
T Consensus 13 ~~~~C~IC~~~~~~--~~~~~~~~C~H~fc~~Ci~~~~~~---------~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEE--GEDVRRLPCMHLFHQVCVDQWLIT---------NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCS--SSCEEECTTSCEEEHHHHHHHHHH---------CSBCTTTCSBSCS
T ss_pred CCCCCeeCCccccC--CCcEEEeCCCCHHHHHHHHHHHHc---------CCCCcCcCccccC
Confidence 34679999998862 123445579999999997654211 2348888776643
No 36
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=65.70 E-value=2.1 Score=32.55 Aligned_cols=51 Identities=24% Similarity=0.502 Sum_probs=34.9
Q ss_pred CCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
+...|.+|...|.. ......-.||++||..|...... ....|-.|...+.+
T Consensus 22 ~~~~C~IC~~~~~~--~~~~~~l~C~H~fh~~Ci~~w~~---------~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFES--RQLLRVLPCNHEFHAKCVDKWLK---------ANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCB--TCEEEEETTTEEEETTHHHHHHH---------HCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCC--CCeEEEECCCCHhHHHHHHHHHH---------cCCcCcCcCCcCCC
Confidence 45689999998872 22345556999999999865421 12468888776654
No 37
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.49 E-value=4 Score=33.89 Aligned_cols=44 Identities=23% Similarity=0.460 Sum_probs=30.3
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
-.|.+|...|.- ..--..||+.||..|...... ..|-.|...+.
T Consensus 23 ~~C~IC~~~~~~----pv~~~~CgH~fC~~Ci~~~~~-----------~~CP~Cr~~~~ 66 (117)
T 1jm7_B 23 LRCSRCTNILRE----PVCLGGCEHIFCSNCVSDCIG-----------TGCPVCYTPAW 66 (117)
T ss_dssp TSCSSSCSCCSS----CBCCCSSSCCBCTTTGGGGTT-----------TBCSSSCCBCS
T ss_pred CCCCCCChHhhC----ccEeCCCCCHHHHHHHHHHhc-----------CCCcCCCCcCc
Confidence 579999886652 222237999999999865311 56888877664
No 38
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=60.96 E-value=3.2 Score=32.49 Aligned_cols=52 Identities=23% Similarity=0.580 Sum_probs=33.7
Q ss_pred CCCcccccCccCCCCc-ccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 149 STTVCMQCTAPFTALT-RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~-rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
+...|.+|-.+|+ +. .+-.-| .||+.||..|..... ......|-.|-..+..
T Consensus 10 ~~~~CpICle~~~-~~d~~~~p~-~CGH~fC~~Cl~~~~--------~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCMEPLE-IDDINFFPC-TCGYQICRFCWHRIR--------TDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCCBCC-TTTTTCCSS-TTSCCCCHHHHHHHT--------TSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCccCc-ccccccccc-CCCCCcCHHHHHHHH--------hcCCCCCCCCCCccCC
Confidence 3468999999886 32 111223 599999999975421 0124678888877654
No 39
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.79 E-value=3 Score=32.27 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=34.5
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
...|.+|...|.. ..+.-.--.||+.||..|....... ......|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~-~~~~~~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 15 VLECPICMESFTE-EQLRPKLLHCGHTICRQCLEKLLAS------SINGVRCPFCSKITR 67 (88)
T ss_dssp CCBCTTTCCBCCT-TSSCEEECSSSCEEEHHHHHHHHHH------CSSCBCCTTTCCCBC
T ss_pred CCCCccCCccccc-cCCCeEECCCCChhhHHHHHHHHHc------CCCCcCCCCCCCccc
Confidence 3679999998873 2221223379999999998654221 123567888887654
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=60.36 E-value=4.3 Score=29.91 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=33.0
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|.. ......||++||..|...... ....|-.|...+..
T Consensus 5 ~~~C~IC~~~~~~----~~~~~~C~H~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 5 AERCPICLEDPSN----YSMALPCLHAFCYVCITRWIR---------QNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCSSCCSCCCS----CEEETTTTEEESTTHHHHHHH---------HSCSTTTTCCCCCC
T ss_pred CCCCeeCCccccC----CcEecCCCCeeHHHHHHHHHh---------CcCcCcCCChhhHh
Confidence 4679999988762 123457999999999865321 12478888777653
No 41
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=59.10 E-value=3.4 Score=31.36 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=35.2
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|..- .. -.||+.||..|......... ........|-.|...+..
T Consensus 12 ~~~C~IC~~~~~~p----~~-l~CgH~fC~~Ci~~~~~~~~--~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTEP----LS-LDCGHSLCRACITVSNKEAV--TSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSSC----CC-CSSSCCCCHHHHSCCCCCCS--SSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCCe----eE-CCCCCHHHHHHHHHHHHhcc--cCCCCCCcCCCCCCcCCH
Confidence 46799999988631 11 36999999999876532211 112346678888877653
No 42
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.95 E-value=4.9 Score=31.25 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=39.6
Q ss_pred CCCccCCCCCCcccccCccCCCC---------ccc-ccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 141 PPEWLPDSSTTVCMQCTAPFTAL---------TRG-RHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 141 ~p~Wv~d~~~~~C~~C~~~F~~l---------~rR-rHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
.+.|..|.+...|.+|...|... ... ...--.||++|+..|...... ....|-.|...+.
T Consensus 6 ~~~w~~~~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 6 SGMWSWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK---------QNNRCPLCQQDWV 75 (81)
T ss_dssp CCCCCCSCCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT---------TCCBCTTTCCBCC
T ss_pred eEEeeecCCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH---------hCCCCCCcCCCcc
Confidence 56787777888999999999521 000 111225999999999765421 1247888876654
No 43
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.17 E-value=4.1 Score=30.62 Aligned_cols=48 Identities=17% Similarity=0.393 Sum_probs=33.2
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|.. ...-..||++||..|...... ..+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 15 YILCSICKGYLID----ATTITECLHTFCKSCIVRHFY---------YSNRCPKCNIVVHQ 62 (72)
T ss_dssp GGSCTTTSSCCSS----CEECSSSCCEECHHHHHHHHH---------HCSSCTTTCCCCCS
T ss_pred CCCCCCCChHHHC----cCEECCCCCHHHHHHHHHHHH---------cCCcCCCcCcccCc
Confidence 3579999887752 233458999999999765421 13568888877654
No 44
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.52 E-value=4 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.473 Sum_probs=22.9
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCce
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~ 185 (457)
...|.+|...|..- .. -.||++||..|....
T Consensus 20 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~ 50 (63)
T 2ysj_A 20 EVICPICLDILQKP----VT-IDCGHNFCLKCITQI 50 (63)
T ss_dssp CCBCTTTCSBCSSC----EE-CTTSSEECHHHHHHH
T ss_pred CCCCCcCCchhCCe----EE-eCCCCcchHHHHHHH
Confidence 46799999877621 11 279999999997654
No 45
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.19 E-value=2.6 Score=31.70 Aligned_cols=46 Identities=24% Similarity=0.565 Sum_probs=31.2
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
...|.+|...|..- . --.||++||..|...... ..+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~~----~-~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (71)
T 2d8t_A 15 VPECAICLQTCVHP----V-SLPCKHVFCYLCVKGASW---------LGKRCALCRQEIP 60 (71)
T ss_dssp CCBCSSSSSBCSSE----E-EETTTEEEEHHHHHHCTT---------CSSBCSSSCCBCC
T ss_pred CCCCccCCcccCCC----E-EccCCCHHHHHHHHHHHH---------CCCcCcCcCchhC
Confidence 46799999877521 1 126999999999754311 1257888887765
No 46
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=54.38 E-value=3.2 Score=36.60 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=34.2
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|.. ...+..||++||..|...... .....|-.|...+..
T Consensus 55 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN----TMTTKECLHRFCADCIITALR--------SGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS----EEEETTTCCEEEHHHHHHHHH--------TTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC----cCEeCCCCChhHHHHHHHHHH--------hCcCCCCCCCCcCCC
Confidence 479999887762 344568999999999865421 124679999887753
No 47
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.00 E-value=7.1 Score=29.66 Aligned_cols=53 Identities=21% Similarity=0.460 Sum_probs=33.8
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|..- .. -.||++||..|.......... ......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p----~~-~~CgH~fC~~Ci~~~~~~~~~---~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQP----LS-LDCGHSFCQACLTANHKKSML---DKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSSC----BC-CSSSCCBCTTHHHHHHHHHHH---TTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCCc----ee-CCCCCHHHHHHHHHHHHHhhc---CCCCCcCCCCCCccCH
Confidence 36799999987631 11 279999999997654221000 1235678888877653
No 48
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=51.82 E-value=2 Score=34.26 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=33.3
Q ss_pred CCCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 149 STTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
+...|.+|...|.. . .....-.||++||..|...... ....|-.|...+.
T Consensus 39 ~~~~C~IC~~~~~~-~-~~~~~l~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVK-G-DVATELPCHHYFHKPCVSIWLQ---------KSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCT-T-CEEEEETTTEEEEHHHHHHHHT---------TTCBCTTTCCBSS
T ss_pred CCCCCcccChhhcC-C-CcEEecCCCChHHHHHHHHHHH---------cCCcCcCcCccCC
Confidence 34679999998873 1 2233345999999999765421 1247888876654
No 49
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.87 E-value=5.5 Score=30.57 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=31.6
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
...|.+|...|.. ..-..||++||..|...... ....|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVVTKCRHYFCESCALEHFR---------ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEECTTSCEEEHHHHHHHHH---------HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeEccCCCHhHHHHHHHHHH---------CCCcCCCcCcccc
Confidence 4579999887762 11257999999999765421 1446888877664
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=50.67 E-value=4.4 Score=32.44 Aligned_cols=47 Identities=17% Similarity=0.409 Sum_probs=32.2
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|.. ......||+.||..|...... ....|-.|...+..
T Consensus 23 ~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFNI----AMIIPQCSHNYCSLCIRKFLS---------YKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCSS----EEECTTTCCEEEHHHHHHHHT---------TCCBCTTTCCBCCG
T ss_pred CCcccCChhhCC----cCEECCCCCHhhHHHHHHHHH---------CCCCCCCCCCcCCh
Confidence 579999887762 233347999999999765421 12578888876653
No 51
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=49.90 E-value=4.2 Score=33.14 Aligned_cols=47 Identities=19% Similarity=0.467 Sum_probs=33.0
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|. .....-.||+.||..|...... ....|-.|...+..
T Consensus 16 ~~C~IC~~~~~----~p~~~~~CgH~fC~~Ci~~~~~---------~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 16 LMCVLCGGYFI----DATTIIECLHSFCKTCIVRYLE---------TSKYCPICDVQVHK 62 (108)
T ss_dssp TBCTTTSSBCS----SEEEETTTCCEEEHHHHHHHHT---------SCSBCTTTCCBSCS
T ss_pred CCCccCChHHh----CcCEeCCCCChhhHHHHHHHHH---------hCCcCcCCCccccc
Confidence 57999988765 2333458999999999755321 12678888887764
No 52
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.73 E-value=5.7 Score=29.82 Aligned_cols=51 Identities=22% Similarity=0.386 Sum_probs=33.3
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (457)
...|.+|...|.. .. ...--.||++||..|...... ..+.|-.|...+...
T Consensus 15 ~~~C~IC~~~~~~-~~-~~~~~~C~H~f~~~Ci~~~~~---------~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 15 HELCAVCLEDFKP-RD-ELGICPCKHAFHRKCLIKWLE---------VRKVCPLCNMPVLQL 65 (74)
T ss_dssp SCBCSSSCCBCCS-SS-CEEEETTTEEEEHHHHHHHHH---------HCSBCTTTCCBCSSC
T ss_pred CCCCcCCCcccCC-CC-cEEEcCCCCEecHHHHHHHHH---------cCCcCCCcCcccccc
Confidence 4679999998862 11 121226999999999765421 123788888776543
No 53
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.60 E-value=2.1 Score=31.71 Aligned_cols=48 Identities=21% Similarity=0.497 Sum_probs=32.1
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|..- . --.||++||..|...... .....|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP----K-QTECGHRFCESCMAALLS--------SSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESSC----C-CCSSSCCCCHHHHHHHHT--------TSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcCe----e-ECCCCCHHHHHHHHHHHH--------hCcCCCCCCCcCCCh
Confidence 36799998877621 1 148999999999765421 234568888776643
No 54
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=49.23 E-value=2.8 Score=35.10 Aligned_cols=47 Identities=19% Similarity=0.356 Sum_probs=32.3
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|..- .--.||+.||..|...... ...+.|-.|...+..
T Consensus 53 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVFRP-----ITTVCQHNVCKDCLDRSFR--------AQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCSSE-----EECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHcCc-----EEeeCCCcccHHHHHHHHh--------HCcCCCCCCCccCCC
Confidence 5799999877621 1137999999999765421 234578888877754
No 55
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.08 E-value=12 Score=28.42 Aligned_cols=27 Identities=26% Similarity=0.698 Sum_probs=20.7
Q ss_pred CCcccc--cCccCCCCcccccccccCCceEeCC
Q 012738 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRI 180 (457)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~ 180 (457)
...|.. |++. . |+ ..+|+.|+..||..
T Consensus 12 ~~~Cs~~~Ck~~-~-ll--~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQR-E-MM--KLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCC-C-SS--CCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCC-C-cc--ceECCCCCcccCcc
Confidence 357886 9986 4 33 57999999999864
No 56
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.91 E-value=9.4 Score=26.89 Aligned_cols=31 Identities=23% Similarity=0.527 Sum_probs=22.8
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCce
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~ 185 (457)
...|.+|...|..- .--.||++||..|....
T Consensus 15 ~~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~ 45 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VIIECGHNFCKACITRW 45 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCCSSCCCCCHHHHHHH
T ss_pred CCCCccCCcccCcc-----EeCCCCCccCHHHHHHH
Confidence 46799999987631 11479999999997553
No 57
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=45.83 E-value=11 Score=31.16 Aligned_cols=25 Identities=32% Similarity=0.745 Sum_probs=17.9
Q ss_pred CcccccCccCCCCcccccccccCCce
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGV 176 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v 176 (457)
..|+.|+++.. +....+||..|.+-
T Consensus 33 ~~CP~Cq~eL~-~~g~~~hC~~C~~~ 57 (101)
T 2jne_A 33 LHCPQCQHVLD-QDNGHARCRSCGEF 57 (101)
T ss_dssp CBCSSSCSBEE-EETTEEEETTTCCE
T ss_pred ccCccCCCcce-ecCCEEECccccch
Confidence 68999999887 44456667777653
No 58
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=45.70 E-value=7.7 Score=30.37 Aligned_cols=48 Identities=21% Similarity=0.563 Sum_probs=31.4
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (457)
.-.|.+|...|.- ...-..||+.||..|......- .....|-.|...+
T Consensus 13 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~-------~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLE-------SDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHH-------CTTCCCTTTCCSS
T ss_pred CCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHh-------cCCCcCcCCCCcC
Confidence 4679999987752 2233349999999997643211 1235788887765
No 59
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=45.70 E-value=7.5 Score=28.56 Aligned_cols=11 Identities=18% Similarity=0.594 Sum_probs=7.6
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|++.|.
T Consensus 5 y~C~~C~k~F~ 15 (60)
T 4gzn_C 5 FFCNFCGKTYR 15 (60)
T ss_dssp EECTTTCCEES
T ss_pred ccCCCCCCEeC
Confidence 35777777775
No 60
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=45.01 E-value=12 Score=29.37 Aligned_cols=12 Identities=25% Similarity=0.750 Sum_probs=9.3
Q ss_pred CCcccccCccCC
Q 012738 150 TTVCMQCTAPFT 161 (457)
Q Consensus 150 ~~~C~~C~~~F~ 161 (457)
...|..|++.|.
T Consensus 28 ~h~C~~Cgk~F~ 39 (85)
T 2lv2_A 28 CHLCPVCGESFA 39 (85)
T ss_dssp TEECTTSCCEES
T ss_pred CEECCCCCCCcC
Confidence 357888888886
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.20 E-value=6.2 Score=31.38 Aligned_cols=55 Identities=18% Similarity=0.487 Sum_probs=31.8
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccc--cccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA--CYDR 207 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~--C~~~ 207 (457)
...|.+|-..|.. ..-..-..||+.||..|.......-.. .+....-.|-. |...
T Consensus 5 ~~~C~IC~~~~~~--~~~~~l~~CgH~FC~~Cl~~~~~~~i~-~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPV--EQMTTIAQCQCIFCTLCLKQYVELLIK-EGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBG--GGEEEETTTTEEEEHHHHHHHHHHHHH-HCSCCCEECSCTTCSSC
T ss_pred CcCCcccCccccc--ccceEcCCCCCcccHHHHHHHHHHHhh-cCCcccccCccccCCCC
Confidence 3579999887652 111222369999999998655332111 11112346777 7766
No 62
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=43.82 E-value=5.9 Score=32.59 Aligned_cols=47 Identities=17% Similarity=0.429 Sum_probs=32.5
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|..- .--.||+.||..|...... .....|-.|...+..
T Consensus 16 ~~C~iC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 16 CQCGICMEILVEP-----VTLPCNHTLCKPCFQSTVE--------KASLCCPFCRRRVSS 62 (115)
T ss_dssp HBCTTTCSBCSSC-----EECTTSCEECHHHHCCCCC--------TTTSBCTTTCCBCHH
T ss_pred CCCccCCcccCce-----eEcCCCCHHhHHHHHHHHh--------HCcCCCCCCCcccCc
Confidence 5799999877621 1127999999999765421 123679999887753
No 63
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.80 E-value=4.6 Score=29.59 Aligned_cols=51 Identities=22% Similarity=0.585 Sum_probs=32.6
Q ss_pred CCcccccCccCCCC--cccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 150 TTVCMQCTAPFTAL--TRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 150 ~~~C~~C~~~F~~l--~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
...|.+|...|..- ..+...-..||++||..|...... ..+.|-.|...+.
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKIN 67 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH---------HCSSCTTTCCCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH---------cCCCCCCCCCccC
Confidence 46799999877521 012224568999999999765421 1346777766553
No 64
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=43.44 E-value=4.5 Score=29.96 Aligned_cols=53 Identities=21% Similarity=0.555 Sum_probs=34.4
Q ss_pred CCCcccccCccCCCCc--ccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 149 STTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
+...|.+|...|..-. .+......||++||..|...... ....|-.|...+..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHH---------HCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHH---------cCCCCCCCCCccCh
Confidence 3468999998875210 11225568999999999865421 12478888776653
No 65
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=43.31 E-value=7 Score=31.65 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=31.2
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
..|.+|...|..- .--.||+.||..|....... ......|-.|...+.
T Consensus 22 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~------~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 22 LECPICLELIKEP-----VSTKCDHIFCKFCMLKLLNQ------KKGPSQCPLCKNDIT 69 (112)
T ss_dssp TSCSSSCCCCSSC-----CBCTTSCCCCSHHHHHHHHS------SSSSCCCTTTSCCCC
T ss_pred CCCcccChhhcCe-----EECCCCCHHHHHHHHHHHHh------CCCCCCCcCCCCcCC
Confidence 4799998877521 11379999999997654211 112357888876654
No 66
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=42.52 E-value=5.5 Score=32.59 Aligned_cols=56 Identities=13% Similarity=0.272 Sum_probs=34.6
Q ss_pred CcccccCccCCCCc----------c---cccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALT----------R---GRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~----------r---RrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|..-. . ..-..-.||++||..|........ .......|-.|...+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~----~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNG----NKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHT----CCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcc----cCCCCCcCCCCCCccCC
Confidence 58999999885210 0 011135699999999987553211 11345688888776643
No 67
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.32 E-value=17 Score=26.52 Aligned_cols=12 Identities=33% Similarity=0.766 Sum_probs=9.5
Q ss_pred CCcccccCccCC
Q 012738 150 TTVCMQCTAPFT 161 (457)
Q Consensus 150 ~~~C~~C~~~F~ 161 (457)
.-.|..|++.|.
T Consensus 17 ~~~C~~C~k~f~ 28 (74)
T 2lce_A 17 PYKCDRCQASFR 28 (74)
T ss_dssp SBCCTTSSCCBS
T ss_pred CeECCCCCceeC
Confidence 457889999886
No 68
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=42.12 E-value=15 Score=28.80 Aligned_cols=27 Identities=26% Similarity=0.677 Sum_probs=21.1
Q ss_pred Ccccc--cCccCCCCcccccccccCCceEeCCC
Q 012738 151 TVCMQ--CTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 151 ~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
..|.. |++. . |+ ...|+.|+.+||..+
T Consensus 15 ~~Cs~~~C~~~-d-fl--pf~C~~C~~~FC~~H 43 (75)
T 1wys_A 15 QHCQVQHCRQR-D-FL--PFVCDGCSGIFCLEH 43 (75)
T ss_dssp CCCSCTTTCCC-S-CC--CEECTTTCCEECSTT
T ss_pred CCcCcccCCCc-c-ce--eeECcccCcCcCccc
Confidence 57876 9886 3 32 588999999999865
No 69
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=41.89 E-value=4.1 Score=29.39 Aligned_cols=52 Identities=19% Similarity=0.547 Sum_probs=33.4
Q ss_pred CCcccccCccCCCC--cccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTAL--TRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l--~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|..- ..+......||++||..|...... ....|-.|...+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---------~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---------NANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHH---------HCSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHH---------cCCCCCCCCccCCc
Confidence 45799999877521 012224568999999999865421 13477778776643
No 70
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.14 E-value=8.1 Score=28.59 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=32.4
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|.. .--.||++||..|..... ...+.|-.|...+..
T Consensus 15 ~~~C~IC~~~~~~------~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 15 EEECCICMDGRAD------LILPCAHSFCQKCIDKWS---------DRHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCSSSCCSCCS------EEETTTEEECHHHHHHSS---------CCCSSCHHHHHCTTC
T ss_pred CCCCeeCCcCccC------cccCCCCcccHHHHHHHH---------HCcCcCCCcCCcccC
Confidence 4679999988763 234699999999976431 135668888766654
No 71
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=39.54 E-value=15 Score=25.08 Aligned_cols=11 Identities=27% Similarity=0.585 Sum_probs=8.0
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|++.|.
T Consensus 5 ~~C~~C~~~f~ 15 (57)
T 3uk3_C 5 RECSYCGKFFR 15 (57)
T ss_dssp CBCTTTCCBCS
T ss_pred ccCCCCcchhC
Confidence 35788888775
No 72
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=39.22 E-value=8.8 Score=29.02 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=31.7
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLD 209 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~ 209 (457)
.-.|.+|...|.- -..-.||+.||..|...... .....|-.|...+.
T Consensus 8 ~~~C~IC~~~~~~-----Pv~~~CgH~fc~~Ci~~~~~--------~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMKD-----PVIVSTGQTYERSSIQKWLD--------AGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCSS-----EEEETTTEEEEHHHHHHHHT--------TTCCBCTTTCCBCS
T ss_pred cCCCCCccccccC-----CEEcCCCCeecHHHHHHHHH--------HCcCCCCCCcCCCC
Confidence 3679999987752 12237999999999765421 12466888877664
No 73
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=38.70 E-value=7.9 Score=29.39 Aligned_cols=53 Identities=17% Similarity=0.317 Sum_probs=34.1
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
...|.+|...|..- . --.||+.||..|......... .......|-.|...+..
T Consensus 19 ~~~C~IC~~~~~~p----~-~~~CgH~fC~~Ci~~~~~~~~---~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKEP----V-SADCNHSFCRACITLNYESNR---NTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSSC----E-ECTTSCCBCHHHHHHHHHHSB---CTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCcc----e-eCCCCCHHHHHHHHHHHHhcc---CCCCCCCCCCCCCcCCH
Confidence 35799999877621 1 236999999999765422210 12236788888877653
No 74
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=38.39 E-value=5 Score=41.02 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=33.6
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (457)
..|.+|...|. ..-.-.||++||..|...... ...+.|-.|-..+...
T Consensus 333 ~~C~ICle~~~-----~pv~lpCGH~FC~~Ci~~wl~--------~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK-----DVKIEPCGHLMCTSCLTSWQE--------SEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC-----CEEEETTCCEECHHHHHHHHH--------HTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC-----CeEEeCCCChhhHHHHHHHHh--------cCCCCCCCCCCccCCc
Confidence 68999987664 234568999999999854311 1346788888777653
No 75
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=37.68 E-value=19 Score=27.33 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=17.8
Q ss_pred CCcccccCccCCCCcccccccccCCc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGG 175 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~ 175 (457)
.-.|..|+..|..-....-.|+.||.
T Consensus 21 ~Y~C~~Cg~~~~l~~~~~iRC~~CG~ 46 (63)
T 3h0g_L 21 IYLCADCGARNTIQAKEVIRCRECGH 46 (63)
T ss_dssp CCBCSSSCCBCCCCSSSCCCCSSSCC
T ss_pred EEECCCCCCeeecCCCCceECCCCCc
Confidence 36799999999832223467777765
No 76
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=36.39 E-value=8.8 Score=32.67 Aligned_cols=31 Identities=19% Similarity=0.472 Sum_probs=19.4
Q ss_pred CCcccccCcc-CCCCcccccccccCCceEeCC
Q 012738 150 TTVCMQCTAP-FTALTRGRHHCRFCGGVFCRI 180 (457)
Q Consensus 150 ~~~C~~C~~~-F~~l~rRrHHCR~CG~vfC~~ 180 (457)
...|..|++. +........||+.||..|-..
T Consensus 60 kytCPfCGk~~vKR~avGIW~C~~Cgk~fAGG 91 (116)
T 3cc2_Z 60 DHACPNCGEDRVDRQGTGIWQCSYCDYKFTGG 91 (116)
T ss_dssp CEECSSSCCEEEEEEETTEEEETTTCCEEECC
T ss_pred CCcCCCCCCceeEecCceeEECCCCCCEEECC
Confidence 3678888872 211112258899998888654
No 77
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=35.44 E-value=19 Score=24.49 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=7.4
Q ss_pred cccccCccCC
Q 012738 152 VCMQCTAPFT 161 (457)
Q Consensus 152 ~C~~C~~~F~ 161 (457)
.|..|++.|.
T Consensus 3 ~C~~C~~~f~ 12 (57)
T 1bbo_A 3 ICEECGIRXK 12 (57)
T ss_dssp BCTTTCCBCS
T ss_pred cCCCCcCcCC
Confidence 4777888775
No 78
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=34.85 E-value=8.9 Score=32.51 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=6.6
Q ss_pred CCCccCCCCCCcccccCccCCCCcc---------ccccc----ccCCceEeCCCCCceeecCccCCCCCceeeccccccc
Q 012738 141 PPEWLPDSSTTVCMQCTAPFTALTR---------GRHHC----RFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (457)
Q Consensus 141 ~p~Wv~d~~~~~C~~C~~~F~~l~r---------RrHHC----R~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (457)
...|.-|-....|.+|...|...-. ....| -.||++|+..|...... ...+|-.|-..
T Consensus 39 va~w~wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~---------~~~~CP~Cr~~ 109 (117)
T 4a0k_B 39 VALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---------TRQVCPLDNRE 109 (117)
T ss_dssp EEEEEECCCC----------------------------------------------------------------------
T ss_pred EEEEeecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH---------cCCcCCCCCCe
Confidence 4567667777899999998862100 01112 26999999999866521 13567777554
No 79
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=34.82 E-value=9 Score=32.73 Aligned_cols=46 Identities=20% Similarity=0.532 Sum_probs=30.7
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|.- ..--.||+.||..|..... .....|-.|-..+..
T Consensus 54 ~~C~iC~~~~~~-----~~~~~CgH~fc~~Ci~~~~---------~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 54 LQCIICSEYFIE-----AVTLNCAHSFCSYCINEWM---------KRKIECPICRKDIKS 99 (138)
T ss_dssp SBCTTTCSBCSS-----EEEETTSCEEEHHHHHHHT---------TTCSBCTTTCCBCCC
T ss_pred CCCcccCcccCC-----ceECCCCCCccHHHHHHHH---------HcCCcCCCCCCcCCC
Confidence 369999987752 1223699999999975431 123458888776643
No 80
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=34.31 E-value=5 Score=33.41 Aligned_cols=54 Identities=20% Similarity=0.504 Sum_probs=38.6
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccccccchhh
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQGVLI 216 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q~~~~ 216 (457)
..|..|..+|. +. ..--.|.++||..|..... .+....|..|-+.+..++....
T Consensus 2 hfC~~C~~Pi~-iy---gRmIPCkHvFCydCa~~~~--------~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 2 HFCDKCGLPIK-VY---GRMIPCKHVFCYDCAILHE--------KKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp CBCTTTCSBCS-EE---EEEETTCCEEEHHHHHHHH--------HTTCCBCTTTCCBCSEEEEEEG
T ss_pred eecCccCCCeE-EE---eeeccccccHHHHHHHHHH--------hccCCCCcCcCCeeeeeEEecc
Confidence 46999999998 43 3345788899999974310 1346789999998887766543
No 81
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=34.22 E-value=19 Score=24.84 Aligned_cols=10 Identities=50% Similarity=1.089 Sum_probs=7.2
Q ss_pred cccccCccCC
Q 012738 152 VCMQCTAPFT 161 (457)
Q Consensus 152 ~C~~C~~~F~ 161 (457)
.|..|++.|.
T Consensus 4 ~C~~C~~~f~ 13 (60)
T 2adr_A 4 VCEVCTRAFA 13 (60)
T ss_dssp CCTTTCCCBS
T ss_pred cCCCCccccC
Confidence 5777777775
No 82
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=33.92 E-value=14 Score=23.56 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.3
Q ss_pred cchHHHHHhhhhhhhc
Q 012738 63 EVNLKNVLSGIFAIIT 78 (457)
Q Consensus 63 ~~~~~~~~~~~~~~~~ 78 (457)
+-++|+|++|+++++|
T Consensus 2 khtiweviaglvallt 17 (32)
T 2lx0_A 2 KHTIWEVIAGLVALLT 17 (32)
T ss_dssp CSSSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH
Confidence 4578999999999875
No 83
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=33.92 E-value=14 Score=26.57 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=16.4
Q ss_pred CcccccCcc-CCCCcccccccccCCceE
Q 012738 151 TVCMQCTAP-FTALTRGRHHCRFCGGVF 177 (457)
Q Consensus 151 ~~C~~C~~~-F~~l~rRrHHCR~CG~vf 177 (457)
..|+.|+.. |-.--..|++|..||..+
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 568888763 221123478888888764
No 84
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=33.83 E-value=25 Score=32.81 Aligned_cols=48 Identities=6% Similarity=-0.161 Sum_probs=30.9
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
.-.|.+|...|. .-..-.||+.||..|......- + ...|-.|-..++.
T Consensus 208 ~~~c~i~~~~~~-----dPv~~~~gh~f~~~~i~~~~~~------~--~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 208 YLCGKISFELMR-----EPCITPSGITYDRKDIEEHLQR------V--GHFNPVTRSPLTQ 255 (281)
T ss_dssp TTBCTTTCSBCS-----SEEECSSCCEEETTHHHHHHHH------T--CSSCTTTCCCCCG
T ss_pred ccCCcCcCCHhc-----CCeECCCCCEECHHHHHHHHHH------C--CCCCcCCCCCCch
Confidence 457888888654 2344569999999997543211 1 1228888777753
No 85
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.14 E-value=34 Score=25.37 Aligned_cols=35 Identities=26% Similarity=0.602 Sum_probs=24.9
Q ss_pred CCcccccCccCCCC-ccccccccc--CCceEeCCCCCc
Q 012738 150 TTVCMQCTAPFTAL-TRGRHHCRF--CGGVFCRICTKG 184 (457)
Q Consensus 150 ~~~C~~C~~~F~~l-~rRrHHCR~--CG~vfC~~Cs~~ 184 (457)
...|+.|+...-.. .--+-.|+. |+.-||..|...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~ 43 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGP 43 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSC
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCC
Confidence 46799999866421 112567888 999999999754
No 86
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=32.47 E-value=15 Score=27.26 Aligned_cols=21 Identities=33% Similarity=0.744 Sum_probs=17.2
Q ss_pred CcccccCccCCCCcccccccccCC
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCG 174 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG 174 (457)
..|+.|..... . |-.+||.||
T Consensus 20 ~ICrkC~ARnp-~--~A~~CRKCg 40 (56)
T 2ayj_A 20 KVCRKCGALNP-I--RATKCRRCH 40 (56)
T ss_dssp EEETTTCCEEC-T--TCSSCTTTC
T ss_pred hhhccccCcCC-c--ccccccCCC
Confidence 57999999877 2 689999887
No 87
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=31.99 E-value=9.5 Score=27.40 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=7.3
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|++.|.
T Consensus 15 ~~C~~C~k~F~ 25 (62)
T 1vd4_A 15 FKCPVCSSTFT 25 (62)
T ss_dssp EECSSSCCEEE
T ss_pred ccCCCCCchhc
Confidence 35777777764
No 88
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.99 E-value=24 Score=35.34 Aligned_cols=43 Identities=21% Similarity=0.497 Sum_probs=30.9
Q ss_pred CcccccCccCCCCcccccccccCCce-EeCCCCCceeecCccCCCCCceeeccccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (457)
..|.+|...|.. ----.||+. ||..|.... +.|-.|...+...
T Consensus 296 ~~C~IC~~~~~~-----~v~lpCgH~~fC~~C~~~~-------------~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 296 RTCKVCMDKEVS-----VVFIPCGHLVVCQECAPSL-------------RKCPICRGIIKGT 339 (345)
T ss_dssp CBCTTTSSSBCC-----EEEETTCCEEECTTTGGGC-------------SBCTTTCCBCCEE
T ss_pred CCCCccCCcCCc-----eEEcCCCChhHhHHHHhcC-------------CcCCCCCCCccCe
Confidence 579999887652 222379999 999997531 6788888776543
No 89
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.79 E-value=9.1 Score=27.96 Aligned_cols=51 Identities=18% Similarity=0.442 Sum_probs=31.0
Q ss_pred CcccccCc-cCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTA-PFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~-~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|.. .|..- .++.-=..||++||..|...... .....|-.|-..+..
T Consensus 4 ~~C~IC~~~~~~~~-~~~~~~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 4 QGCPRCKTTKYRNP-SLKLMVNVCGHTLCESCVDLLFV--------RGAGNCPECGTPLRK 55 (65)
T ss_dssp TCCSTTTTHHHHCS-SCCEEECTTCCCEEHHHHHHHHH--------TTSSSCTTTCCCCSS
T ss_pred CcCCcCCCCccCCC-ccCeecCCCCCHhHHHHHHHHHH--------cCCCcCCCCCCcccc
Confidence 56999988 55421 11111247999999999764321 113467778776643
No 90
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=30.61 E-value=19 Score=29.00 Aligned_cols=28 Identities=29% Similarity=0.629 Sum_probs=21.1
Q ss_pred CCcccc--cCccCCCCcccccccccCCceEeCCC
Q 012738 150 TTVCMQ--CTAPFTALTRGRHHCRFCGGVFCRIC 181 (457)
Q Consensus 150 ~~~C~~--C~~~F~~l~rRrHHCR~CG~vfC~~C 181 (457)
...|.. |++. . |+ ..+|+.||..||..+
T Consensus 25 ~~~C~~~~Ck~~-~-~l--~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDV-E-LV--AVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCE-E-SS--CEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCC-C-cc--ceECCCCCccccccc
Confidence 357886 9886 3 32 479999999998764
No 91
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.66 E-value=61 Score=23.51 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=9.3
Q ss_pred CCcccccCccCC
Q 012738 150 TTVCMQCTAPFT 161 (457)
Q Consensus 150 ~~~C~~C~~~F~ 161 (457)
.-.|..|++.|.
T Consensus 18 ~~~C~~C~~~f~ 29 (77)
T 2cot_A 18 RYKCDECGKSFS 29 (77)
T ss_dssp SSBCSSSCCBCS
T ss_pred CEECCCCCcccC
Confidence 357888888886
No 92
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.57 E-value=21 Score=28.23 Aligned_cols=32 Identities=28% Similarity=0.659 Sum_probs=22.4
Q ss_pred cccccCccCCCC-cccccccccCCceEeCCCCC
Q 012738 152 VCMQCTAPFTAL-TRGRHHCRFCGGVFCRICTK 183 (457)
Q Consensus 152 ~C~~C~~~F~~l-~rRrHHCR~CG~vfC~~Cs~ 183 (457)
-|..|+..|..- ..++..|..||..||..|-.
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~ 59 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKR 59 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCS
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCC
Confidence 366777755310 13467899999999999974
No 93
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=29.38 E-value=20 Score=25.74 Aligned_cols=11 Identities=18% Similarity=0.664 Sum_probs=6.6
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|.+.|.
T Consensus 10 ~~C~~C~k~f~ 20 (70)
T 1x5w_A 10 EKCSECSYSCS 20 (70)
T ss_dssp EECSSSSCEES
T ss_pred eECCCCCcccC
Confidence 35666666664
No 94
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.28 E-value=12 Score=36.27 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=33.4
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeeccc--ccccccc
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDA--CYDRLDP 210 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~--C~~~l~~ 210 (457)
.-.|.+|...|.- ..-...||++||..|-..... ......|-. |...+..
T Consensus 181 el~CPIcl~~f~D----PVts~~CGHsFcR~cI~~~~~-------~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 181 ELTCPITCKPYEA----PLISRKCNHVFDRDGIQNYLQ-------GYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CSBCTTTSSBCSS----EEEESSSCCEEEHHHHHHHST-------TCSCEECSGGGCSCEECG
T ss_pred eeECcCccCcccC----CeeeCCCCCcccHHHHHHHHH-------hCCCCCCCcccccCcCch
Confidence 3579999987752 233457999999999654311 123467888 8877653
No 95
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=28.91 E-value=20 Score=24.57 Aligned_cols=11 Identities=27% Similarity=0.872 Sum_probs=7.7
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|.+.|.
T Consensus 13 ~~C~~C~k~f~ 23 (54)
T 2eps_A 13 YICQSCGKGFS 23 (54)
T ss_dssp EECSSSCCEES
T ss_pred eECCCCCcccC
Confidence 45777887774
No 96
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=28.86 E-value=14 Score=32.23 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=31.8
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|..- . --.||+.||..|...... .....|-.|-..+..
T Consensus 79 ~~C~IC~~~~~~p----v-~~~CgH~fC~~Ci~~~~~--------~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVYQP----V-TTECFHNVCKDCLQRSFK--------AQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCSSE----E-ECTTSCEEEHHHHHHHHH--------TTCCBCTTTCCBCCT
T ss_pred CEeecCChhhcCC----E-EcCCCCchhHHHHHHHHH--------hCCCcCCCCCccCCC
Confidence 5799998877521 1 148999999999755321 123468888777654
No 97
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=28.75 E-value=15 Score=31.78 Aligned_cols=45 Identities=20% Similarity=0.536 Sum_probs=30.8
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRL 208 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l 208 (457)
-.|.+|...|.. ... -.||+.||..|...... .....|-.|...+
T Consensus 32 ~~C~IC~~~~~~----pv~-~~CgH~FC~~Ci~~~~~--------~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLRR----PFQ-AQCGHRYCSFCLASILS--------SGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCSS----EEE-CTTSCEEEHHHHHHHGG--------GSCEECHHHHHTT
T ss_pred cCCCCCChhhcC----cEE-CCCCCccCHHHHHHHHh--------cCCCCCCCCCCcc
Confidence 579999987652 222 38999999999765321 1235788887654
No 98
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=28.55 E-value=22 Score=25.72 Aligned_cols=11 Identities=27% Similarity=0.860 Sum_probs=7.3
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|.+.|.
T Consensus 15 ~~C~~C~k~f~ 25 (72)
T 1x6e_A 15 YGCVECGKAFS 25 (72)
T ss_dssp EECSSSCCEES
T ss_pred ccCCCCCCccC
Confidence 45777777765
No 99
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=28.09 E-value=23 Score=29.60 Aligned_cols=10 Identities=30% Similarity=0.790 Sum_probs=6.3
Q ss_pred CcccccCccC
Q 012738 151 TVCMQCTAPF 160 (457)
Q Consensus 151 ~~C~~C~~~F 160 (457)
..|..|+-.|
T Consensus 68 ~~C~~CG~~F 77 (105)
T 2gmg_A 68 AQCRKCGFVF 77 (105)
T ss_dssp CBBTTTCCBC
T ss_pred cChhhCcCee
Confidence 3566666666
No 100
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=28.01 E-value=57 Score=25.30 Aligned_cols=34 Identities=29% Similarity=0.731 Sum_probs=23.0
Q ss_pred CCcccc--cCccCCCC-cccccccc-----cCCceEeCCCCC
Q 012738 150 TTVCMQ--CTAPFTAL-TRGRHHCR-----FCGGVFCRICTK 183 (457)
Q Consensus 150 ~~~C~~--C~~~F~~l-~rRrHHCR-----~CG~vfC~~Cs~ 183 (457)
...|+. |+.....- ..++-.|. .||..||..|..
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~ 66 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKE 66 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTE
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCc
Confidence 455664 76644310 23568897 899999999974
No 101
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=27.49 E-value=27 Score=24.79 Aligned_cols=29 Identities=31% Similarity=0.658 Sum_probs=17.3
Q ss_pred CCcccccCccCCCCcccccccccCCceEeCCCC
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFCGGVFCRICT 182 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs 182 (457)
...|..|+..-+.+.||-- =|..+|+.|-
T Consensus 4 ~~~C~~C~tt~Tp~WR~gp----~G~~LCNaCG 32 (46)
T 1gnf_A 4 ARECVNCGATATPLWRRDR----TGHYLCNACG 32 (46)
T ss_dssp SCCCTTTCCCCCSSCBCCT----TCCCBCSHHH
T ss_pred CCCCCCcCCCCCCcCccCC----CCCccchHHH
Confidence 4678888888777665421 1445555553
No 102
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.68 E-value=15 Score=24.32 Aligned_cols=9 Identities=56% Similarity=1.567 Sum_probs=7.0
Q ss_pred ccccccCCc
Q 012738 167 RHHCRFCGG 175 (457)
Q Consensus 167 rHHCR~CG~ 175 (457)
+.|||.|-+
T Consensus 9 kqhcrfckk 17 (37)
T 2elu_A 9 KQHCRFCKK 17 (37)
T ss_dssp CCEETTTTE
T ss_pred HHHHHHHHH
Confidence 689998854
No 103
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.43 E-value=19 Score=28.21 Aligned_cols=11 Identities=27% Similarity=0.636 Sum_probs=8.6
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|++.|.
T Consensus 25 ~~C~~C~k~f~ 35 (98)
T 2gqj_A 25 AVCPTCNVVTR 35 (98)
T ss_dssp CCCTTTCCCCS
T ss_pred cCCCCCCCChh
Confidence 46888888886
No 104
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=26.04 E-value=13 Score=28.13 Aligned_cols=43 Identities=23% Similarity=0.546 Sum_probs=29.6
Q ss_pred CcccccCccCCCCcccccccccCCce-EeCCCCCceeecCccCCCCCceeeccccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPL 211 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~ 211 (457)
..|.+|...|.. .---.||+. ||..|.... +.|-.|...+...
T Consensus 25 ~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~-------------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 25 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEAV-------------DKCPMCYTVITFK 68 (74)
T ss_dssp TBCTTTSSSBCC-----EEEETTCCBCCCHHHHTTC-------------SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC-----EEEcCCCChhHHHHhhhcC-------------ccCCCcCcCccCc
Confidence 479999886652 222479999 999996532 6677777766543
No 105
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.89 E-value=21 Score=28.25 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=8.9
Q ss_pred CcccccCccC-C
Q 012738 151 TVCMQCTAPF-T 161 (457)
Q Consensus 151 ~~C~~C~~~F-~ 161 (457)
-.|..|++.| .
T Consensus 35 ~~C~~C~k~F~~ 46 (96)
T 2ctd_A 35 VSCPTCQAVGRK 46 (96)
T ss_dssp EECTTTCSCEES
T ss_pred cCCCCCCCCccc
Confidence 4688999988 5
No 106
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.71 E-value=32 Score=27.73 Aligned_cols=31 Identities=29% Similarity=0.710 Sum_probs=22.0
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKG 184 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~ 184 (457)
..|..|.. |+ ..-..-||.|+++|=..|...
T Consensus 16 ~~C~VC~~-~t--~~~l~pCRvC~RvfH~~CL~r 46 (89)
T 1wil_A 16 EMCDVCEV-WT--AESLFPCRVCTRVFHDGCLRR 46 (89)
T ss_dssp CCCTTTCC-CC--SSCCSSCSSSSSCCCHHHHHH
T ss_pred cccCcccc-cc--ccceeccccccccccHhhccc
Confidence 57888876 44 123688999999987777543
No 107
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=25.67 E-value=33 Score=33.85 Aligned_cols=63 Identities=21% Similarity=0.499 Sum_probs=38.9
Q ss_pred CCCcccccCccC--CCC-------cccccccccCCc------eEeCCCCCceeecCccCC--------CCCceeeccccc
Q 012738 149 STTVCMQCTAPF--TAL-------TRGRHHCRFCGG------VFCRICTKGRCLLPVRFR--------ERNPQRVCDACY 205 (457)
Q Consensus 149 ~~~~C~~C~~~F--~~l-------~rRrHHCR~CG~------vfC~~Cs~~~~~lP~~~~--------~~~p~RVC~~C~ 205 (457)
....|..|+..= +.+ ..|..||-.||. +-|..|-+.+-+--.... ....+-+|+.|.
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~C~ 260 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPSCQ 260 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETTTT
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCCCeeEEEecCccccCCCcceEEEEccccc
Confidence 347899999843 211 235789999985 478888764321100111 223356899999
Q ss_pred cccccc
Q 012738 206 DRLDPL 211 (457)
Q Consensus 206 ~~l~~~ 211 (457)
..+..+
T Consensus 261 ~YlK~~ 266 (309)
T 2fiy_A 261 GYLKQF 266 (309)
T ss_dssp EEEEEE
T ss_pred chHhhh
Confidence 888654
No 108
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.75 E-value=17 Score=27.56 Aligned_cols=42 Identities=24% Similarity=0.580 Sum_probs=29.1
Q ss_pred CcccccCccCCCCcccccccccCCce-EeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGV-FCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v-fC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|.. .---.||+. ||..|... .+.|-.|...+..
T Consensus 26 ~~C~IC~~~~~~-----~~~~pCgH~~~C~~C~~~-------------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNIA-----IVFVPCGHLVTCKQCAEA-------------VDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCCC-----BCCSSSCCCCBCHHHHHH-------------CSBCTTTCCBCCC
T ss_pred CCCCcCCCCCCC-----EEEecCCCHHHHHHHhhC-------------CCCCccCCceecC
Confidence 469999886652 222479999 99999731 2567778776654
No 109
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.53 E-value=24 Score=25.84 Aligned_cols=10 Identities=20% Similarity=0.444 Sum_probs=6.0
Q ss_pred cccccCccCC
Q 012738 152 VCMQCTAPFT 161 (457)
Q Consensus 152 ~C~~C~~~F~ 161 (457)
.|..|++.|.
T Consensus 9 ~C~~C~k~f~ 18 (78)
T 2d9h_A 9 QCEICGFTCR 18 (78)
T ss_dssp ECSSSCCEES
T ss_pred ECCCCCCeeC
Confidence 4666666664
No 110
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=24.30 E-value=40 Score=33.41 Aligned_cols=41 Identities=20% Similarity=0.525 Sum_probs=17.5
Q ss_pred cccCCCCccCCCC-CCcccccCcc---CCC-CcccccccccCCceE
Q 012738 137 LEAEPPEWLPDSS-TTVCMQCTAP---FTA-LTRGRHHCRFCGGVF 177 (457)
Q Consensus 137 l~~~~p~Wv~d~~-~~~C~~C~~~---F~~-l~rRrHHCR~CG~vf 177 (457)
.+.....|.||-. ...|..|+.. +-. ..+.-.-|..||.|+
T Consensus 7 ~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 7 IDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp ----------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred HHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 3333444777755 5679999874 210 112344566666665
No 111
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.91 E-value=21 Score=28.41 Aligned_cols=31 Identities=10% Similarity=0.163 Sum_probs=21.4
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCce
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGR 185 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~ 185 (457)
-.|.+|...|.- ..--..||++||..|-...
T Consensus 8 ~~CPI~~~~~~d----PV~~~~cGh~f~r~cI~~~ 38 (94)
T 2yu4_A 8 FTCPITKEEMKK----PVKNKVCGHTYEEDAIVRM 38 (94)
T ss_dssp CBCTTTCSBCSS----EEEESSSCCEEEHHHHHHH
T ss_pred eECcCcCchhcC----CEEcCCCCCeecHHHHHHH
Confidence 569999886651 2222359999999997544
No 112
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=23.90 E-value=26 Score=30.77 Aligned_cols=11 Identities=36% Similarity=0.975 Sum_probs=6.4
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|++.|.
T Consensus 133 y~C~~Cg~~~~ 143 (165)
T 2lcq_A 133 YVCIGCGRKFS 143 (165)
T ss_dssp EEESSSCCEES
T ss_pred EECCCCCCccc
Confidence 34666666655
No 113
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=23.87 E-value=36 Score=26.54 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=17.1
Q ss_pred CCcccccCccCCCCccc----ccccccCCceEeC
Q 012738 150 TTVCMQCTAPFTALTRG----RHHCRFCGGVFCR 179 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~ 179 (457)
...|.-|++. . + +| --||+.||..|-.
T Consensus 26 ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AG 56 (72)
T 3jyw_9 26 RYDCSFCGKK-T-V-KRGAAGIWTCSCCKKTVAG 56 (72)
T ss_dssp CBCCSSCCSS-C-B-SBCSSSCBCCSSSCCCCCC
T ss_pred CccCCCCCCc-e-e-EecCCCeEECCCCCCEEeC
Confidence 3578888864 3 3 33 2478888877644
No 114
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.47 E-value=29 Score=19.38 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=4.8
Q ss_pred cccccCCceE
Q 012738 168 HHCRFCGGVF 177 (457)
Q Consensus 168 HHCR~CG~vf 177 (457)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 2m0e_A 3 HKCPHCDKKF 12 (29)
T ss_dssp CCCSSCCCCC
T ss_pred CcCCCCCccc
Confidence 3455555444
No 115
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.02 E-value=29 Score=27.76 Aligned_cols=28 Identities=21% Similarity=0.584 Sum_probs=18.4
Q ss_pred CCcccccCccCCCCcccc----cccccCCceEeCC
Q 012738 150 TTVCMQCTAPFTALTRGR----HHCRFCGGVFCRI 180 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRr----HHCR~CG~vfC~~ 180 (457)
...|+-|++. . + +|. -||+.||..|-..
T Consensus 35 ky~CpfCGk~-~-v-kR~a~GIW~C~kCg~~~AGG 66 (83)
T 3j21_i 35 KHTCPVCGRK-A-V-KRISTGIWQCQKCGATFAGG 66 (83)
T ss_dssp CBCCSSSCSS-C-E-EEEETTEEEETTTCCEEECC
T ss_pred ccCCCCCCCc-e-e-EecCcCeEEcCCCCCEEeCC
Confidence 3578888875 4 3 332 4788888887554
No 116
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=22.90 E-value=18 Score=29.49 Aligned_cols=61 Identities=25% Similarity=0.450 Sum_probs=40.5
Q ss_pred cCCCCCCcccccCccCCCCc--ccccccccCCceEeCCCCCceeecCccCCCCCceeeccccccccccccc
Q 012738 145 LPDSSTTVCMQCTAPFTALT--RGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDPLQG 213 (457)
Q Consensus 145 v~d~~~~~C~~C~~~F~~l~--rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~~q~ 213 (457)
+.......|.+|+-.-..-. .--.-|..|+..+|..|-.+.. ..-...|..|...+...++
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYEr--------keG~q~CpqCktrYkr~kg 73 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYER--------REGTQNCPQCKTRYKRLRG 73 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHH--------HTSCSSCTTTCCCCCCCTT
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHH--------hccCccccccCCccccccC
Confidence 33444578999999765211 1135699999999999976531 2346788888887764433
No 117
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=22.54 E-value=36 Score=27.77 Aligned_cols=27 Identities=22% Similarity=0.466 Sum_probs=17.2
Q ss_pred CcccccCccCCCCcccc----cccccCCceEeCC
Q 012738 151 TVCMQCTAPFTALTRGR----HHCRFCGGVFCRI 180 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRr----HHCR~CG~vfC~~ 180 (457)
..|+.|++. . + +|. -||+.||..|-..
T Consensus 37 y~CpfCgk~-~-v-kR~a~GIW~C~~Cg~~~AGG 67 (92)
T 3iz5_m 37 YFCEFCGKF-A-V-KRKAVGIWGCKDCGKVKAGG 67 (92)
T ss_dssp BCCTTTCSS-C-B-EEEETTEEECSSSCCEEECC
T ss_pred ccCcccCCC-e-e-EecCcceEEcCCCCCEEeCC
Confidence 568888874 4 3 332 4788888777543
No 118
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=22.27 E-value=22 Score=29.27 Aligned_cols=47 Identities=19% Similarity=0.350 Sum_probs=31.6
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
-.|.+|...|.. ... -.||++||..|....... ....|-.|-..+..
T Consensus 19 ~~C~IC~~~~~~----p~~-~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALRE----AVQ-TPCGHRFCKACIIKSIRD--------AGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCSS----EEE-CTTSCEEEHHHHHHHHHH--------HCSBCTTTCCBCCG
T ss_pred CCCCcCChhhcC----eEE-CCcCChhhHHHHHHHHhh--------CCCCCCCCCCCcCH
Confidence 579999987762 122 369999999997653211 11278888777654
No 119
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.02 E-value=37 Score=23.83 Aligned_cols=7 Identities=43% Similarity=1.179 Sum_probs=3.9
Q ss_pred cccccCc
Q 012738 152 VCMQCTA 158 (457)
Q Consensus 152 ~C~~C~~ 158 (457)
.|..|+.
T Consensus 7 ~CP~C~~ 13 (50)
T 1pft_A 7 VCPACES 13 (50)
T ss_dssp SCTTTSC
T ss_pred eCcCCCC
Confidence 4666654
No 120
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.83 E-value=36 Score=24.74 Aligned_cols=23 Identities=39% Similarity=0.842 Sum_probs=15.0
Q ss_pred CcccccCccCCCCcccccccccCCce
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGV 176 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~v 176 (457)
..|+.|...-. .+.-+||.||..
T Consensus 15 ~iCpkC~a~~~---~gaw~CrKCG~~ 37 (51)
T 3j21_g 15 YVCLRCGATNP---WGAKKCRKCGYK 37 (51)
T ss_dssp EECTTTCCEEC---TTCSSCSSSSSC
T ss_pred ccCCCCCCcCC---CCceecCCCCCc
Confidence 56777777633 256777777763
No 121
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=21.67 E-value=34 Score=19.17 Aligned_cols=12 Identities=17% Similarity=0.420 Sum_probs=7.8
Q ss_pred cccccccCCceE
Q 012738 166 GRHHCRFCGGVF 177 (457)
Q Consensus 166 RrHHCR~CG~vf 177 (457)
|.+.|..||+.|
T Consensus 2 k~~~C~~C~k~f 13 (27)
T 2kvh_A 2 KPFSCSLCPQRS 13 (27)
T ss_dssp CCEECSSSSCEE
T ss_pred cCccCCCcChhh
Confidence 346677777766
No 122
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=21.22 E-value=25 Score=28.97 Aligned_cols=59 Identities=19% Similarity=0.341 Sum_probs=36.7
Q ss_pred CCCccCCCCCCcccccCccCCCCcc---------ccccc----ccCCceEeCCCCCceeecCccCCCCCceeeccccccc
Q 012738 141 PPEWLPDSSTTVCMQCTAPFTALTR---------GRHHC----RFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDR 207 (457)
Q Consensus 141 ~p~Wv~d~~~~~C~~C~~~F~~l~r---------RrHHC----R~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~ 207 (457)
...|.-|.+...|.+|...|..--. .-..| -.||++|+..|...... ....|-.|-..
T Consensus 28 v~~w~~d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---------~~~~CP~Cr~~ 98 (106)
T 3dpl_R 28 VALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---------TRQVCPLDNRE 98 (106)
T ss_dssp EEEEEESSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---------TCSBCSSSCSB
T ss_pred eeEeecCCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---------cCCcCcCCCCc
Confidence 4567667777899999998872100 00111 36999999999765421 13467777655
Q ss_pred c
Q 012738 208 L 208 (457)
Q Consensus 208 l 208 (457)
+
T Consensus 99 ~ 99 (106)
T 3dpl_R 99 W 99 (106)
T ss_dssp C
T ss_pred c
Confidence 3
No 123
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=21.19 E-value=31 Score=26.97 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=18.5
Q ss_pred CCCcccccCccCCCCccc----ccccccCCceEeCC
Q 012738 149 STTVCMQCTAPFTALTRG----RHHCRFCGGVFCRI 180 (457)
Q Consensus 149 ~~~~C~~C~~~F~~l~rR----rHHCR~CG~vfC~~ 180 (457)
....|..|++. . + +| --+|+.||..|-..
T Consensus 26 ~ky~C~fCgk~-~-v-kR~a~GIW~C~~C~~~~AGG 58 (73)
T 1ffk_W 26 KKYKCPVCGFP-K-L-KRASTSIWVCGHCGYKIAGG 58 (73)
T ss_pred cCccCCCCCCc-e-e-EEEEeEEEECCCCCcEEECC
Confidence 34679999862 3 2 23 35788888887543
No 124
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=21.10 E-value=49 Score=25.36 Aligned_cols=28 Identities=29% Similarity=0.790 Sum_probs=21.0
Q ss_pred CCcccccCccCCCCcccccccccC-CceEeCCCCC
Q 012738 150 TTVCMQCTAPFTALTRGRHHCRFC-GGVFCRICTK 183 (457)
Q Consensus 150 ~~~C~~C~~~F~~l~rRrHHCR~C-G~vfC~~Cs~ 183 (457)
-..|.+|...=+ ..|.-| |.+||..|-.
T Consensus 8 ~pWC~ICneDAt------lrC~gCdgDLYC~rC~r 36 (67)
T 2d8v_A 8 LPWCCICNEDAT------LRCAGCDGDLYCARCFR 36 (67)
T ss_dssp CSSCTTTCSCCC------EEETTTTSEEECSSHHH
T ss_pred CCeeEEeCCCCe------EEecCCCCceehHHHHH
Confidence 355999998633 458889 8999999853
No 125
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.07 E-value=30 Score=22.86 Aligned_cols=11 Identities=27% Similarity=0.664 Sum_probs=8.1
Q ss_pred CcccccCccCC
Q 012738 151 TVCMQCTAPFT 161 (457)
Q Consensus 151 ~~C~~C~~~F~ 161 (457)
-.|..|++.|.
T Consensus 13 ~~C~~C~k~f~ 23 (48)
T 2epr_A 13 VACEICGKIFR 23 (48)
T ss_dssp EEETTTTEEES
T ss_pred eeCCCCCcccC
Confidence 45788888775
No 126
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=20.73 E-value=25 Score=28.69 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=31.5
Q ss_pred CcccccCccCCCCcccccccccCCceEeCCCCCceeecCccCCCCCceeecccccccccc
Q 012738 151 TVCMQCTAPFTALTRGRHHCRFCGGVFCRICTKGRCLLPVRFRERNPQRVCDACYDRLDP 210 (457)
Q Consensus 151 ~~C~~C~~~F~~l~rRrHHCR~CG~vfC~~Cs~~~~~lP~~~~~~~p~RVC~~C~~~l~~ 210 (457)
..|.+|...|.. ... -.||++||..|....... ..+.|-.|...+..
T Consensus 24 ~~C~IC~~~~~~----p~~-~~CgH~fC~~Ci~~~~~~--------~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 24 ISCQICEHILAD----PVE-TSCKHLFCRICILRCLKV--------MGSYCPSCRYPCFP 70 (116)
T ss_dssp TBCTTTCSBCSS----EEE-CTTSCEEEHHHHHHHHHH--------TCSBCTTTCCBCCG
T ss_pred CCCCCCCcHhcC----cEE-cCCCCcccHHHHHHHHhH--------CcCcCCCCCCCCCH
Confidence 579999887762 122 479999999997543211 13468888777654
No 127
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.41 E-value=38 Score=18.99 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=8.4
Q ss_pred cccccccCCceEe
Q 012738 166 GRHHCRFCGGVFC 178 (457)
Q Consensus 166 RrHHCR~CG~vfC 178 (457)
|.+.|..||+.|-
T Consensus 2 k~~~C~~C~k~f~ 14 (28)
T 2kvf_A 2 RPYSCSVCGKRFS 14 (28)
T ss_dssp CSEECSSSCCEES
T ss_pred cCccCCCCCcccC
Confidence 3466777777663
No 128
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=20.19 E-value=34 Score=19.23 Aligned_cols=10 Identities=30% Similarity=0.879 Sum_probs=5.6
Q ss_pred cccccCCceE
Q 012738 168 HHCRFCGGVF 177 (457)
Q Consensus 168 HHCR~CG~vf 177 (457)
+.|..||+.|
T Consensus 3 ~~C~~C~~~f 12 (29)
T 1ard_A 3 FVCEVCTRAF 12 (29)
T ss_dssp CBCTTTCCBC
T ss_pred eECCCCCccc
Confidence 4566666554
No 129
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.07 E-value=40 Score=28.16 Aligned_cols=10 Identities=30% Similarity=0.886 Sum_probs=5.2
Q ss_pred cccccCccCC
Q 012738 152 VCMQCTAPFT 161 (457)
Q Consensus 152 ~C~~C~~~F~ 161 (457)
.|..|+..|.
T Consensus 75 ~C~~CG~~~e 84 (119)
T 2kdx_A 75 ECKDCSHVFK 84 (119)
T ss_dssp ECSSSSCEEC
T ss_pred EcCCCCCEEe
Confidence 3555555554
Done!