Query 012743
Match_columns 457
No_of_seqs 241 out of 1015
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 05:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012743.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012743hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03000 NPH3: NPH3 family; I 100.0 7.1E-76 1.5E-80 575.0 21.3 236 215-450 1-239 (258)
2 KOG4441 Proteins containing BT 100.0 1.5E-34 3.3E-39 313.2 16.7 243 22-327 17-260 (571)
3 PHA02713 hypothetical protein; 100.0 7.3E-33 1.6E-37 299.7 14.6 233 25-325 10-246 (557)
4 PHA02790 Kelch-like protein; P 100.0 4.1E-30 9E-35 273.6 13.3 209 28-304 9-222 (480)
5 PHA03098 kelch-like protein; P 100.0 1E-28 2.2E-33 264.9 14.6 223 38-327 6-236 (534)
6 PF00651 BTB: BTB/POZ domain; 99.7 3.5E-18 7.6E-23 145.1 9.1 105 33-145 2-110 (111)
7 smart00225 BTB Broad-Complex, 99.6 2.9E-16 6.4E-21 125.8 7.1 89 43-139 1-90 (90)
8 KOG4350 Uncharacterized conser 99.6 1.5E-15 3.3E-20 154.2 12.2 216 32-314 35-254 (620)
9 KOG2075 Topoisomerase TOP1-int 99.4 9.1E-13 2E-17 136.9 14.0 195 25-260 98-298 (521)
10 KOG4591 Uncharacterized conser 99.3 8.3E-12 1.8E-16 117.3 9.7 171 20-236 42-220 (280)
11 KOG4682 Uncharacterized conser 99.0 1.5E-09 3.3E-14 111.0 9.2 180 34-255 62-245 (488)
12 KOG0783 Uncharacterized conser 98.9 3.7E-09 8.1E-14 115.6 7.5 148 19-183 686-846 (1267)
13 KOG0783 Uncharacterized conser 98.2 1.7E-06 3.7E-11 95.3 7.1 65 39-105 556-633 (1267)
14 PF07707 BACK: BTB And C-termi 98.0 1.5E-06 3.2E-11 72.8 0.4 102 160-307 1-102 (103)
15 PF11822 DUF3342: Domain of un 97.8 2E-05 4.3E-10 79.8 4.9 93 44-146 1-104 (317)
16 smart00875 BACK BTB And C-term 97.4 0.0002 4.3E-09 59.1 4.5 99 160-305 1-99 (101)
17 KOG2716 Polymerase delta-inter 97.1 0.0016 3.4E-08 63.7 7.4 93 44-145 7-104 (230)
18 PF02214 BTB_2: BTB/POZ domain 97.0 0.00051 1.1E-08 57.3 3.3 81 44-127 1-88 (94)
19 smart00512 Skp1 Found in Skp1 96.9 0.0023 5.1E-08 54.6 6.1 79 44-125 4-104 (104)
20 KOG2838 Uncharacterized conser 96.1 0.0037 8E-08 62.2 2.8 95 21-117 110-210 (401)
21 KOG3473 RNA polymerase II tran 95.8 0.031 6.7E-07 47.6 6.7 73 49-124 25-111 (112)
22 PF03931 Skp1_POZ: Skp1 family 94.5 0.13 2.7E-06 40.0 6.2 55 44-102 3-58 (62)
23 KOG1724 SCF ubiquitin ligase, 93.3 0.19 4.1E-06 46.9 5.9 89 49-146 13-127 (162)
24 KOG3840 Uncharaterized conserv 89.7 1.5 3.3E-05 44.7 8.3 110 36-147 90-221 (438)
25 KOG2838 Uncharacterized conser 89.0 0.18 3.8E-06 50.6 1.1 57 52-109 262-329 (401)
26 KOG0511 Ankyrin repeat protein 88.5 1.2 2.7E-05 46.5 6.8 74 51-127 301-379 (516)
27 KOG2714 SETA binding protein S 87.6 1.6 3.5E-05 46.3 7.2 82 44-127 13-99 (465)
28 KOG1987 Speckle-type POZ prote 85.6 0.86 1.9E-05 45.5 3.9 89 50-146 109-201 (297)
29 PF01466 Skp1: Skp1 family, di 82.1 1.5 3.3E-05 35.5 3.3 34 107-146 10-43 (78)
30 KOG1665 AFH1-interacting prote 76.4 9.3 0.0002 37.6 7.1 88 44-140 11-105 (302)
31 KOG0511 Ankyrin repeat protein 76.2 2 4.3E-05 45.0 2.7 93 29-125 135-231 (516)
32 KOG2715 Uncharacterized conser 68.3 21 0.00046 33.7 7.2 96 42-145 21-121 (210)
33 COG5201 SKP1 SCF ubiquitin lig 67.7 20 0.00043 32.5 6.6 90 47-146 8-122 (158)
34 KOG3713 Voltage-gated K+ chann 54.9 33 0.00072 37.2 6.8 94 39-141 28-135 (477)
35 KOG2723 Uncharacterized conser 44.6 91 0.002 30.7 7.5 80 44-127 11-97 (221)
36 PF10929 DUF2811: Protein of u 37.6 21 0.00045 27.7 1.5 18 432-449 9-26 (57)
37 KOG4350 Uncharacterized conser 35.1 19 0.0004 38.5 1.2 116 108-253 145-264 (620)
38 COG3510 CmcI Cephalosporin hyd 34.0 28 0.0006 33.8 2.0 30 420-449 184-215 (237)
39 PHA00617 ribbon-helix-helix do 24.1 1.1E+02 0.0024 25.4 3.7 36 223-258 44-80 (80)
40 KOG2016 NEDD8-activating compl 22.6 88 0.0019 33.9 3.5 59 389-447 344-432 (523)
41 PF13764 E3_UbLigase_R4: E3 ub 22.3 55 0.0012 38.0 2.2 75 340-447 252-335 (802)
42 PF11123 DNA_Packaging_2: DNA 22.3 50 0.0011 27.1 1.3 16 431-446 31-46 (82)
43 PF14363 AAA_assoc: Domain ass 21.9 54 0.0012 27.6 1.6 27 421-447 29-55 (98)
No 1
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=100.00 E-value=7.1e-76 Score=574.97 Aligned_cols=236 Identities=47% Similarity=0.705 Sum_probs=206.6
Q ss_pred cccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhccccccCCCC---CCCCccchHHHHHHHHHHHHhc
Q 012743 215 VDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGR---KKIEPHQEHEKRVVLETIVSLL 291 (457)
Q Consensus 215 ~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~~~~~~~~~~---~~~~~~~~~~~r~LLE~Iv~lL 291 (457)
++||+||++.|++++|+|||.+|+++|+++++|+++|++|+++|+|+..+..+.. .........++|.+||+||+||
T Consensus 1 ~dWW~eDl~~L~id~f~rvi~a~~~~~~~~~~I~~~l~~Ya~k~l~~~~~~~~~~~~~~~~~~~~~~~~r~llEtiV~lL 80 (258)
T PF03000_consen 1 KDWWFEDLSELSIDLFKRVISAMKSKGMKPEVIGEALMHYAKKWLPGLSRSSSGSSSSAESSTSSENEQRELLETIVSLL 80 (258)
T ss_pred CCccHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcccccccccccccccchhHHHHHHHHHHHHHhC
Confidence 4899999999999999999999999999999999999999999999985432221 1223456789999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhccChHhHHHHHHHHHhhhccCCccccccccCCCCCCccccHHHHHHHHHHHhccccCC
Q 012743 292 PRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRMALQLGQAVLDDLLIPAYSFTGDTLFDVDTVHRILMNYLDYQVDG 371 (457)
Q Consensus 292 p~e~~~vs~~fL~~lLr~a~~l~aS~~Cr~~LE~rig~qLd~AtldDLLiPs~~~~~~~~yDVd~V~ril~~Fl~~~~~~ 371 (457)
|.|++++||+|||+|||+|+++++|..||.+||+|||+|||||||||||||+.+...+|+||||+|+|||++||.++++.
T Consensus 81 P~e~~svsc~FL~~LLr~A~~l~as~~cr~~Le~rIg~qLd~AtldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~ 160 (258)
T PF03000_consen 81 PPEKGSVSCSFLFRLLRAAIMLGASSACRNELERRIGSQLDQATLDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEA 160 (258)
T ss_pred CCCCCcccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhhccHHHhcccCCCCcccchhhHHHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999993334459999999999999999986532
Q ss_pred CCCccCCCCCCCCCCchhhhHHHhhhhhhhhhhcCCCCCChhHHHHHHHhcCCccccCCCchhHHHHHHHhhccchhhh
Q 012743 372 NRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLAELIPEQSRITEDGMYRAIDIYLKVHYEQFLH 450 (457)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lPd~aR~~~DgLYrAIDiYLk~Hp~l~~~ 450 (457)
+............++.+++.+||||||+||+|||+|+||||+||++|||++|++||++|||||||||||||+||+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp~ls~~ 239 (258)
T PF03000_consen 161 GEEEESESESGSSPSSSSLVKVAKLVDGYLAEIAPDPNLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHPGLSEE 239 (258)
T ss_pred ccccccccccccCCChHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcccCCHH
Confidence 1111111111125678899999999999999999999999999999999999999999999999999999999999875
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=313.20 Aligned_cols=243 Identities=19% Similarity=0.220 Sum_probs=219.5
Q ss_pred CCchHHHHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHH
Q 012743 22 ELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKF 100 (457)
Q Consensus 22 s~~~~~~~~~~~~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~felvl~F 100 (457)
.....+--++.+.+|.++.+|||+|.|++++|++||.||||+|+|||+||++. +|+++.+|+|+++ .+++++++++|
T Consensus 17 ~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l~~v--~~~~l~~ll~y 94 (571)
T KOG4441|consen 17 PSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINLEGV--DPETLELLLDY 94 (571)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEEecC--CHHHHHHHHHH
Confidence 33455566778899999999999999999999999999999999999999997 8999999999998 59999999999
Q ss_pred HhCCccccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHH
Q 012743 101 CYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAI 180 (457)
Q Consensus 101 cYt~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsL 180 (457)
+||++++|+.+||+.|+.||.+|||++ |++.|++||.+++ .+.||.++..+|+.++ +..|
T Consensus 95 ~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l---------~~~Nclgi~~~a~~~~-----~~~L 154 (571)
T KOG4441|consen 95 AYTGKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQL---------DPSNCLGIRRFAELHS-----CTEL 154 (571)
T ss_pred hhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcC---------CHHHHHHHHHHHHhcC-----cHHH
Confidence 999999999999999999999999998 9999999999998 7899999999999998 3788
Q ss_pred HHHHhhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhc
Q 012743 181 AYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLR 260 (457)
Q Consensus 181 a~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~ 260 (457)
..+|..++. .++...+-.|||+.||.+.+..+|+....+.-+|+.|+++++.|++++..
T Consensus 155 ~~~a~~~i~---------------------~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~ 213 (571)
T KOG4441|consen 155 LEVADEYIL---------------------QHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFE 213 (571)
T ss_pred HHHHHHHHH---------------------HHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHh
Confidence 888876653 23456677899999999999999999999999999999999999999877
Q ss_pred cccccCCCCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhccChHhHHHHHHHH
Q 012743 261 GLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEKRM 327 (457)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~lLr~a~~l~aS~~Cr~~LE~ri 327 (457)
.+ ..+..+++++|+ + +.++++||.+.+....+++.++.|+..|..=.
T Consensus 214 ~R--------------~~~~~~ll~~vr--~----~ll~~~~l~~~v~~~~~~~~~~~c~~~l~ea~ 260 (571)
T KOG4441|consen 214 ER--------------EEHLPALLEAVR--L----PLLPPQFLVEIVESEPLIKRDSACRDLLDEAK 260 (571)
T ss_pred hH--------------HHHHHHHHHhcC--c----cCCCHHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 53 267889999999 5 77999999999999999999999999987644
No 3
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.3e-33 Score=299.68 Aligned_cols=233 Identities=13% Similarity=0.152 Sum_probs=195.3
Q ss_pred hHHHHhhHHHHhhcCCCeeEEEEEC-CEEEeeccccccccChHHHHhhcCC-CCC-CCceEecCCCCCCHHHHHHHHHHH
Q 012743 25 STAMKRTSEWIFSQEIPSDVTVHVG-GTSFSLHKFPLVSKCGYIRKLVSVS-SEA-DLSVIEIPDVPGGAEAFELAAKFC 101 (457)
Q Consensus 25 ~~~~~~~~~~~r~~~~~~DV~l~V~-~~~F~~HK~vLaa~S~yfr~mf~~~-~e~-~~~~v~L~~~pGg~~~felvl~Fc 101 (457)
..+. ++.+.+|.++.+|||+|.|+ |++|+|||.||||+|+|||+||+++ +|+ .+.+|+|+++ ++++|+.+++|+
T Consensus 10 ~~~l-~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v--~~~~~~~ll~y~ 86 (557)
T PHA02713 10 RRVV-SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMF--DKDAVKNIVQYL 86 (557)
T ss_pred HHHH-HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccC--CHHHHHHHHHHh
Confidence 3444 67888999999999999998 8999999999999999999999987 655 4688999999 599999999999
Q ss_pred hCCccccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHHH
Q 012743 102 YGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIA 181 (457)
Q Consensus 102 Yt~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsLa 181 (457)
|||+ ||.+||+.|+.||++|||+. |++.|++||.+++ ...||.++..+|..++ | ..|.
T Consensus 87 Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l---------~~~NCl~i~~~~~~~~----~-~~L~ 144 (557)
T PHA02713 87 YNRH--ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYT---------NHDTCIYMYHRLYEMS----H-IPIV 144 (557)
T ss_pred cCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhC---------CccchHHHHHHHHhcc----c-hHHH
Confidence 9997 79999999999999999998 9999999999997 6889999998888876 3 3477
Q ss_pred HHHhhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhhc
Q 012743 182 YIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMM-ARGFKQYALGPVLMLYAQKSLR 260 (457)
Q Consensus 182 ~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~-~~~~~ee~v~~al~~yak~~l~ 260 (457)
.+|..+.. . ++....-.|||..|+.+.+..+|+... .+..+|+.|++++++|++++..
T Consensus 145 ~~a~~~i~------~---------------~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~ 203 (557)
T PHA02713 145 KYIKRMLM------S---------------NIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYI 203 (557)
T ss_pred HHHHHHHH------H---------------HHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHH
Confidence 77665542 1 122233369999999999999999876 4667999999999999998865
Q ss_pred cccccCCCCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhccChHhHHHHHH
Q 012743 261 GLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLETTVACRLDLEK 325 (457)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~lLr~a~~l~aS~~Cr~~LE~ 325 (457)
.+ .+..+|++.|+ + +.++.++++ .+.....++.++.|+..|++
T Consensus 204 ~r---------------~~~~~ll~~VR--~----~~l~~~~~~-~~~~~~~i~~~~~c~~~l~~ 246 (557)
T PHA02713 204 TE---------------EQLLCILSCID--I----QNLDKKSRL-LLYSNKTINMYPSCIQFLLD 246 (557)
T ss_pred HH---------------HHHhhhHhhhh--H----hhcchhhhh-hhcchHHHHhhHHHHHHHhh
Confidence 32 23558999999 5 557888887 56677888899999999866
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=4.1e-30 Score=273.63 Aligned_cols=209 Identities=9% Similarity=0.003 Sum_probs=168.2
Q ss_pred HHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEec--CCCCCCHHHHHHHHHHHhCC
Q 012743 28 MKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEI--PDVPGGAEAFELAAKFCYGI 104 (457)
Q Consensus 28 ~~~~~~~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L--~~~pGg~~~felvl~FcYt~ 104 (457)
+-+..-.+|.+|.+|||+. |.|++|+|||.||||+|+|||+||+++ +|++ .+|.+ .++ ++++|+.+++|+|||
T Consensus 9 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~HR~VLAa~S~YFraMF~~~~~Es~-~~v~~~~~~v--~~~~l~~lldy~YTg 84 (480)
T PHA02790 9 YCKNILALSMTKKFKTIIE-AIGGNIIVNSTILKKLSPYFRTHLRQKYTKNK-DPVTRVCLDL--DIHSLTSIVIYSYTG 84 (480)
T ss_pred hhhhHHHHHhhhhhceEEE-EcCcEEeeehhhhhhcCHHHHHHhcCCccccc-cceEEEecCc--CHHHHHHHHHhheee
Confidence 3344456888999999876 456799999999999999999999987 7774 35665 377 599999999999999
Q ss_pred ccccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHHHHHH
Q 012743 105 NFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIA 184 (457)
Q Consensus 105 ~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsLa~ka 184 (457)
++.||.+||+.|+.||.+|||++ |++.|++||.+++ .+.||.++..+|+.|+ ++.|..+|
T Consensus 85 ~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l---------~~~NCl~i~~~A~~y~-----~~~L~~~a 144 (480)
T PHA02790 85 KVYIDSHNVVNLLRASILTSVEF------IIYTCINFILRDF---------RKEYCVECYMMGIEYG-----LSNLLCHT 144 (480)
T ss_pred eEEEecccHHHHHHHHHHhChHH------HHHHHHHHHHhhC---------CcchHHHHHHHHHHhC-----HHHHHHHH
Confidence 99999999999999999999998 9999999999998 7889999999999998 49999999
Q ss_pred hhccccCCCCCCCCCCCCccccCCCCCCcccccc--hhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhccc
Q 012743 185 CKENQFSGSGRAESGTDNAISDMVSHPKTIVDWW--AEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGL 262 (457)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww--~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~~~ 262 (457)
..++. . ++.+... +|||..|++ ..+|+....+..+|+.|++++++|+++. .
T Consensus 145 ~~fi~------~---------------nF~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~-~-- 197 (480)
T PHA02790 145 KDFIA------K---------------HFLELEDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKR-R-- 197 (480)
T ss_pred HHHHH------H---------------hHHHHhcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhh-H--
Confidence 77753 1 1222222 389999997 4688888888889999999999999863 1
Q ss_pred cccCCCCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHH
Q 012743 263 EVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLS 304 (457)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~ 304 (457)
...+.+++.|+.++ ..+.++..++-
T Consensus 198 ---------------~~~~~l~~~vr~~i--r~~~l~~~~l~ 222 (480)
T PHA02790 198 ---------------NRLGNLLLLIKNVI--RSNYLSPRGIN 222 (480)
T ss_pred ---------------HHHHHHHHHHHhcC--ChhhCCHHHHH
Confidence 23456667665412 12456666653
No 5
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=1e-28 Score=264.94 Aligned_cols=223 Identities=13% Similarity=0.149 Sum_probs=186.6
Q ss_pred cCCCeeEEEEE--CCEEEeeccccccccChHHHHhhcCCCCCCCceEecCCCCCCHHHHHHHHHHHhCCccccCchhHhh
Q 012743 38 QEIPSDVTVHV--GGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAG 115 (457)
Q Consensus 38 ~~~~~DV~l~V--~~~~F~~HK~vLaa~S~yfr~mf~~~~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it~~NV~~ 115 (457)
+|.+|||+|.| +|++|++||.+|+++|+|||+||+++.. +.+|+|++ + +++|+.+++|+|||+++|+.+||..
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~--~~~i~l~~-~--~~~~~~~l~y~Ytg~~~i~~~~~~~ 80 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK--ENEINLNI-D--YDSFNEVIKYIYTGKINITSNNVKD 80 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC--CceEEecC-C--HHHHHHHHHHhcCCceEEcHHHHHH
Confidence 78999999998 9999999999999999999999998632 56899987 4 9999999999999999999999999
Q ss_pred HHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHHHHHHhhccccCCCCC
Q 012743 116 LRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGR 195 (457)
Q Consensus 116 L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~~~~~~~~ 195 (457)
|+.||++|||++ |++.|++||.+.+ ...||.+++.+|+.+++ +.|...|...+.
T Consensus 81 ll~~A~~l~~~~------l~~~C~~~l~~~l---------~~~nc~~~~~~a~~~~~-----~~L~~~~~~~i~------ 134 (534)
T PHA03098 81 ILSIANYLIIDF------LINLCINYIIKII---------DDNNCIDIYRFSFFYGC-----KKLYSAAYNYIR------ 134 (534)
T ss_pred HHHHHHHhCcHH------HHHHHHHHHHHhC---------CHhHHHHHHHHHHHcCc-----HHHHHHHHHHHH------
Confidence 999999999998 9999999999987 68899999999999983 666666544432
Q ss_pred CCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhccccccCCCCCCCCcc
Q 012743 196 AESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPH 275 (457)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~~~~~~~~~~~~~~~~ 275 (457)
.| +...--.+||..|+.+.+..+|+.......+|+.|+++++.|++++...+.
T Consensus 135 ~n---------------f~~v~~~~~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~------------ 187 (534)
T PHA03098 135 NN---------------IELIYNDPDFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKY------------ 187 (534)
T ss_pred HH---------------HHHHhcCchhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhH------------
Confidence 00 111112579999999999999998888778999999999999998755432
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHH------HHhhhccChHhHHHHHHHH
Q 012743 276 QEHEKRVVLETIVSLLPRERNAMSVSFLSVLLR------AAIYLETTVACRLDLEKRM 327 (457)
Q Consensus 276 ~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~lLr------~a~~l~aS~~Cr~~LE~ri 327 (457)
.+..+|++.|+ + +.++..+|..+.+ ...++ .+..|+..+....
T Consensus 188 --~~~~~ll~~vR--~----~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 236 (534)
T PHA03098 188 --KDICLILKVLR--I----TFLSEEGIKKLKRWKLRIKKKKIV-FNKRCIKIIYSKK 236 (534)
T ss_pred --hHHHHHHhhcc--c----cccCHHHHHHHHHHHhhcCCccee-ccccchHHHHHHH
Confidence 56788999999 5 7799999999876 33444 6788988776544
No 6
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.75 E-value=3.5e-18 Score=145.06 Aligned_cols=105 Identities=38% Similarity=0.551 Sum_probs=93.4
Q ss_pred HHHhhcCCCeeEEEEEC-CEEEeeccccccccChHHHHhhcCC--CCCCCceEecCCCCCCHHHHHHHHHHHhCCccccC
Q 012743 33 EWIFSQEIPSDVTVHVG-GTSFSLHKFPLVSKCGYIRKLVSVS--SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEIN 109 (457)
Q Consensus 33 ~~~r~~~~~~DV~l~V~-~~~F~~HK~vLaa~S~yfr~mf~~~--~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it 109 (457)
+.++.++.+||++|.|+ +.+|++||.+|+++|+||++||.+. ++....+|.+++++ +++|+.+++|+|++++.++
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~l~~~Y~~~~~~~ 79 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISLPDVS--PEAFEAFLEYMYTGEIEIN 79 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEETTSC--HHHHHHHHHHHHHSEEEEE
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccccccc--ccccccccccccCCcccCC
Confidence 45788899999999999 8999999999999999999999997 34444578899995 9999999999999999998
Q ss_pred -chhHhhHHHHHhhhccccccccchHHHHHHHHHHHH
Q 012743 110 -TENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEV 145 (457)
Q Consensus 110 -~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 145 (457)
.+|+..++.+|.+|+|++ |++.|++||.+.
T Consensus 80 ~~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 80 SDENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp -TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 999999999999999997 999999999875
No 7
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.65 E-value=2.9e-16 Score=125.82 Aligned_cols=89 Identities=36% Similarity=0.496 Sum_probs=81.6
Q ss_pred eEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHHHhCCccccCchhHhhHHHHHh
Q 012743 43 DVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAE 121 (457)
Q Consensus 43 DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it~~NV~~L~~AA~ 121 (457)
||++.|||++|++||.+|+++|+||++||.+. .+.....+.+.++ .+++|+.+++|+||+++.++..|+..++.+|.
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l~~~--~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~ 78 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYLDDV--SPEDFRALLEFLYTGKLDLPEENVEELLELAD 78 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEecCC--CHHHHHHHHHeecCceeecCHHHHHHHHHHHH
Confidence 78999999999999999999999999999986 4445678889887 59999999999999999999999999999999
Q ss_pred hhccccccccchHHHHHH
Q 012743 122 YLEMTEDYAVGNLVGRAE 139 (457)
Q Consensus 122 ~Lqm~e~~~~~NL~~~ce 139 (457)
+++|++ |+..|+
T Consensus 79 ~~~~~~------l~~~c~ 90 (90)
T smart00225 79 YLQIPG------LVELCE 90 (90)
T ss_pred HHCcHH------HHhhhC
Confidence 999997 888774
No 8
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.63 E-value=1.5e-15 Score=154.22 Aligned_cols=216 Identities=18% Similarity=0.192 Sum_probs=164.7
Q ss_pred HHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHHHhCCccccCc
Q 012743 32 SEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINT 110 (457)
Q Consensus 32 ~~~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it~ 110 (457)
...++......||++.|+++.|++||.+||++|.|||+|+-++ .|+.+..|.|++- .+++|..+++|+|||++.++.
T Consensus 35 ~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipLq~t--~~eAF~~lLrYiYtg~~~l~~ 112 (620)
T KOG4350|consen 35 FDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPLQET--NSEAFRALLRYIYTGKIDLAG 112 (620)
T ss_pred HHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhcccccccc--cHHHHHHHHHHHhhcceeccc
Confidence 4568888999999999999999999999999999999999887 7888888999876 599999999999999999877
Q ss_pred hh---HhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHHHHHHhhc
Q 012743 111 EN---VAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKE 187 (457)
Q Consensus 111 ~N---V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~ 187 (457)
.. ....+.-|...++.+ |..+..+||.+.+ .++|-..+...|--|++ ..|...++.+
T Consensus 113 ~~ed~lld~LslAh~Ygf~~------Le~aiSeYl~~iL---------~~~NvCmifdaA~ly~l-----~~Lt~~C~mf 172 (620)
T KOG4350|consen 113 VEEDILLDYLSLAHRYGFIQ------LETAISEYLKEIL---------KNENVCMIFDAAYLYQL-----TDLTDYCMMF 172 (620)
T ss_pred chHHHHHHHHHHHHhcCcHH------HHHHHHHHHHHHH---------cccceeeeeeHHHHhcc-----hHHHHHHHHH
Confidence 44 444555666666665 9999999999986 67776677788888874 6666666655
Q ss_pred cccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhhccccccCC
Q 012743 188 NQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKSLRGLEVFGK 267 (457)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~l~~~~~~~~ 267 (457)
.. + +..+.--.+-|..|+.+-++.++.... -...|..|+-||..|.++.-.
T Consensus 173 mD--------r-------------nA~~lL~~~sFn~LSk~sL~e~l~RDs-FfApE~~IFlAv~~W~~~Nsk------- 223 (620)
T KOG4350|consen 173 MD--------R-------------NADQLLEDPSFNRLSKDSLKELLARDS-FFAPELKIFLAVRSWHQNNSK------- 223 (620)
T ss_pred Hh--------c-------------CHHhhhcCcchhhhhHHHHHHHHhhhc-ccchHHHHHHHHHHHHhcCch-------
Confidence 31 0 000111245677899999888876532 234888999999999865421
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHhhhc
Q 012743 268 GRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLLRAAIYLE 314 (457)
Q Consensus 268 ~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~lLr~a~~l~ 314 (457)
...+.++|.|+ | +.++..-|+..+|-.-++.
T Consensus 224 ----------e~~k~~~~~VR--L----PLm~lteLLnvVRPsGlls 254 (620)
T KOG4350|consen 224 ----------EASKVLLELVR--L----PLMTLTELLNVVRPSGLLS 254 (620)
T ss_pred ----------hhHHHHHHHHh--h----hhccHHHHHhccCcccCcC
Confidence 45678899998 7 5567777777766655554
No 9
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.45 E-value=9.1e-13 Score=136.85 Aligned_cols=195 Identities=17% Similarity=0.222 Sum_probs=151.4
Q ss_pred hHHHHhhHHHHhhcCCCeeEEEEECC-----EEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHH
Q 012743 25 STAMKRTSEWIFSQEIPSDVTVHVGG-----TSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAA 98 (457)
Q Consensus 25 ~~~~~~~~~~~r~~~~~~DV~l~V~~-----~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~felvl 98 (457)
..-++.++.-+..+...+|+++.|++ +.||+||.+||..|+-|-+||.++ .+....+|+++|+ .|.+|...+
T Consensus 98 ~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~lpdv--epaaFl~~L 175 (521)
T KOG2075|consen 98 KETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRLPDV--EPAAFLAFL 175 (521)
T ss_pred hhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeecCCc--ChhHhHHHH
Confidence 34456667778899999999999984 699999999999999999999997 4545689999999 599999999
Q ss_pred HHHhCCccccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHH
Q 012743 99 KFCYGINFEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCID 178 (457)
Q Consensus 99 ~FcYt~~i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCid 178 (457)
+|+|+-.+.+.++||-.++-||.-.-.+. |...|.+||+..+.. .+.+.-|-+| ..+.++-.++++|++
T Consensus 176 ~flYsdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~~--~naf~~L~q~---A~lf~ep~Li~~c~e 244 (521)
T KOG2075|consen 176 RFLYSDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLMA--DNAFLELFQR---AKLFDEPSLISICLE 244 (521)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcCC--hHHHHHHHHH---HHhhcCHHHHHHHHH
Confidence 99999999999999999999998888886 999999999998753 2333344444 345667788999988
Q ss_pred HHHHHHhhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh
Q 012743 179 AIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFKQYALGPVLMLYAQKS 258 (457)
Q Consensus 179 sLa~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~~ee~v~~al~~yak~~ 258 (457)
.|......-. . .=||-|+-.+ .+.|+.+++...+ .++|-.+++++.+|++--
T Consensus 245 ~id~~~~~al-~-------------------------~EGf~did~~-~dt~~evl~r~~l-~~~e~~lfeA~lkw~~~e 296 (521)
T KOG2075|consen 245 VIDKSFEDAL-T-------------------------PEGFCDIDST-RDTYEEVLRRDTL-EAREFRLFEAALKWAEAE 296 (521)
T ss_pred HhhhHHHhhh-C-------------------------ccceeehhhH-HHHHHHHHhhccc-chhHHHHHHHHHhhccCc
Confidence 8766542211 0 0134455444 8887777776433 447999999999999743
Q ss_pred hc
Q 012743 259 LR 260 (457)
Q Consensus 259 l~ 260 (457)
-+
T Consensus 297 ~~ 298 (521)
T KOG2075|consen 297 CQ 298 (521)
T ss_pred ch
Confidence 33
No 10
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.31 E-value=8.3e-12 Score=117.28 Aligned_cols=171 Identities=15% Similarity=0.211 Sum_probs=133.8
Q ss_pred CCCCchHHHHhhHH---HHhhcCCCeeEEEEEC---CEEEeeccccccccChHHHHhhcCCCCCCCceEecCCCCCCHHH
Q 012743 20 KKELLSTAMKRTSE---WIFSQEIPSDVTVHVG---GTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEA 93 (457)
Q Consensus 20 ~~s~~~~~~~~~~~---~~r~~~~~~DV~l~V~---~~~F~~HK~vLaa~S~yfr~mf~~~~e~~~~~v~L~~~pGg~~~ 93 (457)
..|.|++|..|-.+ -+.....++|+++.++ ++.+++||+|||++|++.+ |.+..+.+..+..+.|. .+++
T Consensus 42 keSs~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dekse~~~~dDa--d~Ea 117 (280)
T KOG4591|consen 42 KESSPDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEKSEELDLDDA--DFEA 117 (280)
T ss_pred ccCCchhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcchhhhccccc--CHHH
Confidence 36889999998854 6788899999999998 6799999999999999764 44443333455667787 5999
Q ss_pred HHHHHHHHhCCccccCchhH--hhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhc
Q 012743 94 FELAAKFCYGINFEINTENV--AGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVK 171 (457)
Q Consensus 94 felvl~FcYt~~i~it~~NV--~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~ 171 (457)
|..+++++||.+|++..+.+ -.|+..|.-+|+.- |.++|+.=|...+ ...||..+..+||+++
T Consensus 118 ~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l---------~V~NCIk~Ye~AEe~n 182 (280)
T KOG4591|consen 118 FHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL---------HVDNCIKFYEFAEELN 182 (280)
T ss_pred HHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh---------hHhhHHHHHHHHHHhh
Confidence 99999999999999887665 56889999999997 9999999998876 7899999999999987
Q ss_pred hhhHHHHHHHHHHhhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHH
Q 012743 172 LVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIA 236 (457)
Q Consensus 172 iv~rCidsLa~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a 236 (457)
. ..| +..|..+....|+.. --+||..++..++-|+|..
T Consensus 183 ~-----~qL-~n~~~eiIA~~W~dL---------------------~~a~FaqMs~aLLYklId~ 220 (280)
T KOG4591|consen 183 A-----RQL-MNVAAEIIAGAWDDL---------------------GKADFAQMSAALLYKLIDG 220 (280)
T ss_pred H-----HHH-HHHHHHHHHhhcccc---------------------ChHHHHhccHHHHHHHHcC
Confidence 3 222 222333333344321 1478899999998888865
No 11
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=111.00 Aligned_cols=180 Identities=21% Similarity=0.220 Sum_probs=142.9
Q ss_pred HHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCC-CCCCCceEec--CCCCCCHHHHHHHHHHHhCCccccCc
Q 012743 34 WIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEI--PDVPGGAEAFELAAKFCYGINFEINT 110 (457)
Q Consensus 34 ~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L--~~~pGg~~~felvl~FcYt~~i~it~ 110 (457)
-+..+|.-+||+|.+-|..-++||.-| ..|+||.+||.+. +|++...|+| +|=.-+..+|..++.=+|..+|+|..
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l 140 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKL 140 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccH
Confidence 466789999999999999999999888 4599999999997 7777665544 43222699999999999999999999
Q ss_pred hhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHhchhhHHHHHHHHHHhhcccc
Q 012743 111 ENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKVKLVGQCIDAIAYIACKENQF 190 (457)
Q Consensus 111 ~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~~iv~rCidsLa~ka~~~~~~ 190 (457)
+-|..++.||.+||++. |+++|.+-+.+.+ .+++..+....+..||+ +.+-++.-.-...
T Consensus 141 ~dv~gvlAaA~~lqldg------l~qrC~evMie~l---------spkta~~yYea~ckYgl-----e~vk~kc~ewl~~ 200 (488)
T KOG4682|consen 141 SDVVGVLAAACLLQLDG------LIQRCGEVMIETL---------SPKTACGYYEAACKYGL-----ESVKKKCLEWLLN 200 (488)
T ss_pred HHHHHHHHHHHHHHHhh------HHHHHHHHHHHhc---------ChhhhhHhhhhhhhhhh-----HHHHHHHHHHHHH
Confidence 99999999999999997 9999999999997 67888889999999994 6665554321110
Q ss_pred CCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCCC-chhHHHHHHHHH
Q 012743 191 SGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGFK-QYALGPVLMLYA 255 (457)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~~-ee~v~~al~~ya 255 (457)
--|+..+ ..-|-.++.+++..++.+-..-.+. |=.++..+..|+
T Consensus 201 nl~~i~~---------------------~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wm 245 (488)
T KOG4682|consen 201 NLMTIQN---------------------VQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWM 245 (488)
T ss_pred hhHhhhh---------------------HHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHH
Confidence 0011110 1256789999999998887776665 778898888886
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.86 E-value=3.7e-09 Score=115.55 Aligned_cols=148 Identities=19% Similarity=0.249 Sum_probs=111.4
Q ss_pred cCCCCchHHHHhhHHHHhhcCCCe--eEEEEE-CCEEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHH
Q 012743 19 KKKELLSTAMKRTSEWIFSQEIPS--DVTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAF 94 (457)
Q Consensus 19 ~~~s~~~~~~~~~~~~~r~~~~~~--DV~l~V-~~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~f 94 (457)
.+.++|.+.-+...+.+...+..| |+.|.. +|+.|+|||.+|++|+.||..||... .|+.. |...+.|-.++.+
T Consensus 686 ~~~~~~n~ia~~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS--~t~~~~p~~~e~m 763 (1267)
T KOG0783|consen 686 PLLSLTNDIAQLYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSS--ITVNLSPLTVEHM 763 (1267)
T ss_pred chhhcccHHHHHhcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhcc--ceeecCcchHHHH
Confidence 345566666666666665554333 555544 68889999999999999999999986 55544 5555566579999
Q ss_pred HHHHHHHh-CCcccc-----CchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHH
Q 012743 95 ELAAKFCY-GINFEI-----NTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAE 168 (457)
Q Consensus 95 elvl~FcY-t~~i~i-----t~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae 168 (457)
+.+++|.| +-+.++ ..+=+..++..|+.|=+++ |.+.||.-|.+.+ .+++|-.++.||-
T Consensus 764 ~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl---------~lk~~~~llefaa 828 (1267)
T KOG0783|consen 764 SIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE------LKSICEQSLLRKL---------NLKTLPTLLEFAA 828 (1267)
T ss_pred HHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHh---------cccchHHHHHHHH
Confidence 99999999 444443 1223677888999999998 9999999999987 8999999999999
Q ss_pred Hhc---hhhHHHHHHHHH
Q 012743 169 KVK---LVGQCIDAIAYI 183 (457)
Q Consensus 169 ~~~---iv~rCidsLa~k 183 (457)
.|+ +-.+|+|=+-..
T Consensus 829 mY~ak~L~~~C~dfic~N 846 (1267)
T KOG0783|consen 829 MYHAKELYSRCIDFICHN 846 (1267)
T ss_pred HhhHHHHHHHHHHHHHHh
Confidence 886 556777665443
No 13
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.25 E-value=1.7e-06 Score=95.33 Aligned_cols=65 Identities=31% Similarity=0.514 Sum_probs=55.2
Q ss_pred CCCeeEEEEECCEEEeeccccccccChHHHHhhcCCCC-------------CCCceEecCCCCCCHHHHHHHHHHHhCCc
Q 012743 39 EIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSE-------------ADLSVIEIPDVPGGAEAFELAAKFCYGIN 105 (457)
Q Consensus 39 ~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~~e-------------~~~~~v~L~~~pGg~~~felvl~FcYt~~ 105 (457)
+-+.|||++||+..|++||++|+++|++||++|...+. +....+.+.++| |.+||.++.|+||..
T Consensus 556 ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~ve~i~--p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 556 DSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRVEDIP--PLMFEILLHYIYTDT 633 (1267)
T ss_pred cccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeeeccCC--HHHHHHHHHHHhccc
Confidence 45679999999999999999999999999999987421 123456688997 999999999999975
No 14
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=98.00 E-value=1.5e-06 Score=72.82 Aligned_cols=102 Identities=12% Similarity=0.045 Sum_probs=75.3
Q ss_pred hhchHHHHHHhchhhHHHHHHHHHHhhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHh
Q 012743 160 SQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMA 239 (457)
Q Consensus 160 C~~l~~~Ae~~~iv~rCidsLa~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~ 239 (457)
|.+++.+|+.|+ +..|..++..... . ++......++|..||.+.+..+++....
T Consensus 1 C~~i~~~A~~~~-----~~~L~~~~~~~i~------~---------------nf~~v~~~~~f~~L~~~~l~~iL~~~~l 54 (103)
T PF07707_consen 1 CLSIYRLAEKYG-----LEELAEACLRFIA------K---------------NFNEVSKSDEFLELPFDQLIEILSSDDL 54 (103)
T ss_dssp HHHHHHHHHHTT------HHHHHHHHHHHH------H---------------THHHHTTSHHHHCS-HHHHHHHHHTSS-
T ss_pred ChhHHHHHHHcC-----hHHHHHHHHHHHH------H---------------HHHHHccchhhhcCCHHHHHHHHhcccc
Confidence 889999999998 4888887766553 1 1122233679999999999999998776
Q ss_pred cCCCchhHHHHHHHHHHhhhccccccCCCCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 012743 240 RGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSVLL 307 (457)
Q Consensus 240 ~~~~ee~v~~al~~yak~~l~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~lL 307 (457)
+..+|..|+++++.|+++....+. .....|++.|+. +.+|.++|.+.+
T Consensus 55 ~v~~E~~v~~av~~W~~~~~~~r~--------------~~~~~Ll~~iR~------~~l~~~~L~~~v 102 (103)
T PF07707_consen 55 NVSSEDDVFEAVLRWLKHNPENRE--------------EHLKELLSCIRF------PLLSPEELQNVV 102 (103)
T ss_dssp -ECTCCCHHHHHHHHHHCTHHHHT--------------TTHHHHHCCCHH------HCT-HHHHHHCC
T ss_pred ccccHHHHHHHHHHHHHhCHHHHH--------------HHHHHHHHhCCc------ccCCHHHHHHHH
Confidence 667999999999999998876432 567889999995 668898887643
No 15
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.81 E-value=2e-05 Score=79.81 Aligned_cols=93 Identities=25% Similarity=0.352 Sum_probs=76.9
Q ss_pred EEEEECC------EEEeeccccccccChHHHHhhcC---C-CCCCCceEecC-CCCCCHHHHHHHHHHHhCCccccCchh
Q 012743 44 VTVHVGG------TSFSLHKFPLVSKCGYIRKLVSV---S-SEADLSVIEIP-DVPGGAEAFELAAKFCYGINFEINTEN 112 (457)
Q Consensus 44 V~l~V~~------~~F~~HK~vLaa~S~yfr~mf~~---~-~e~~~~~v~L~-~~pGg~~~felvl~FcYt~~i~it~~N 112 (457)
|+|+|-| +.|.|.+.+|.+.=.||+..+.. . .+...-.|.++ |+ .+|+-+++|+.+....||++|
T Consensus 1 v~ihV~De~~~~~rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idisVhCDv----~iF~WLm~yv~~~~p~l~~~N 76 (317)
T PF11822_consen 1 VVIHVCDEARNEKRDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDISVHCDV----HIFEWLMRYVKGEPPSLTPSN 76 (317)
T ss_pred CEEEEEcCCCCcceeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceEEecCh----hHHHHHHHHhhcCCCcCCcCc
Confidence 4566633 68999999999999999999964 2 22233334443 65 699999999999999999999
Q ss_pred HhhHHHHHhhhccccccccchHHHHHHHHHHHHh
Q 012743 113 VAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (457)
Q Consensus 113 V~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v 146 (457)
|+.++--|+||||++ |++.|-.|..+.+
T Consensus 77 vvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 77 VVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred EEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 999999999999998 9999999997775
No 16
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=97.40 E-value=0.0002 Score=59.10 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=69.4
Q ss_pred hhchHHHHHHhchhhHHHHHHHHHHhhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHh
Q 012743 160 SQGLLPIAEKVKLVGQCIDAIAYIACKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMA 239 (457)
Q Consensus 160 C~~l~~~Ae~~~iv~rCidsLa~ka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~ 239 (457)
|.++..+|+.|+ +..|..++..... .|+ ..... .++|..||.+.+..++.....
T Consensus 1 c~~i~~~a~~~~-----~~~L~~~~~~~i~------~nf------------~~~~~---~~~f~~L~~~~l~~iL~~d~l 54 (101)
T smart00875 1 CLGIRRFAELYG-----LEELLEKALRFIL------KNF------------LEVAQ---SEEFLELSLEQLLSLLSSDDL 54 (101)
T ss_pred CHhHHHHHHHhC-----hHHHHHHHHHHHH------HHH------------HHHhc---CcHHhcCCHHHHHHHhCcccC
Confidence 677888888877 3555555544331 000 00011 378999999999999998887
Q ss_pred cCCCchhHHHHHHHHHHhhhccccccCCCCCCCCccchHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Q 012743 240 RGFKQYALGPVLMLYAQKSLRGLEVFGKGRKKIEPHQEHEKRVVLETIVSLLPRERNAMSVSFLSV 305 (457)
Q Consensus 240 ~~~~ee~v~~al~~yak~~l~~~~~~~~~~~~~~~~~~~~~r~LLE~Iv~lLp~e~~~vs~~fL~~ 305 (457)
...+|+.++++++.|+++.... . .....+++.|+ + +.+|..+|.+
T Consensus 55 ~v~~E~~v~~av~~W~~~~~~~--------------~-~~~~~ll~~ir--~----~~~~~~~l~~ 99 (101)
T smart00875 55 NVPSEEEVFEAVLRWVKHDPER--------------R-RHLPELLSHVR--F----PLLSPEYLLE 99 (101)
T ss_pred CCCCHHHHHHHHHHHHHCCHHH--------------H-HHHHHHHHhCC--C----CCCCHHHHHh
Confidence 7778999999999999887421 1 35677888888 4 6688887755
No 17
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.07 E-value=0.0016 Score=63.66 Aligned_cols=93 Identities=23% Similarity=0.351 Sum_probs=76.4
Q ss_pred EEEEECCEEEeeccccccccChHHHHhhcCCC--CCCC-ceEecCCCCCCHHHHHHHHHHHhCCcccc--CchhHhhHHH
Q 012743 44 VTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSS--EADL-SVIEIPDVPGGAEAFELAAKFCYGINFEI--NTENVAGLRC 118 (457)
Q Consensus 44 V~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~~--e~~~-~~v~L~~~pGg~~~felvl~FcYt~~i~i--t~~NV~~L~~ 118 (457)
|.+.|||..|...|.-|.-..++|+.|+...- +.+. ..|-| | -+|.=|++|++|+=.|.+.| +..++.+|+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI-D--RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI-D--RSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe-c--CChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 55899999999999999999999999999862 2222 23433 3 35899999999999887776 4566889999
Q ss_pred HHhhhccccccccchHHHHHHHHHHHH
Q 012743 119 VAEYLEMTEDYAVGNLVGRAEAYLNEV 145 (457)
Q Consensus 119 AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 145 (457)
=|+|..+++ |++.|+.=+...
T Consensus 84 EA~fYlL~~------Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 84 EAEFYLLDG------LVELCQSAIARL 104 (230)
T ss_pred HHHHhhHHH------HHHHHHHHhhhc
Confidence 999999998 999999877665
No 18
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.05 E-value=0.00051 Score=57.28 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=61.4
Q ss_pred EEEEECCEEEeecccccc-ccChHHHHhhcCC----CCCCCceEecCCCCCCHHHHHHHHHHHhC-CccccC-chhHhhH
Q 012743 44 VTVHVGGTSFSLHKFPLV-SKCGYIRKLVSVS----SEADLSVIEIPDVPGGAEAFELAAKFCYG-INFEIN-TENVAGL 116 (457)
Q Consensus 44 V~l~V~~~~F~~HK~vLa-a~S~yfr~mf~~~----~e~~~~~v~L~~~pGg~~~felvl~FcYt-~~i~it-~~NV~~L 116 (457)
|+|.|||+.|.+-+..|. ....+|.+|+... .......+-|. = .|+.|+.|++|.-+ +.+... ...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiD-R--dp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFID-R--DPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEES-S---HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEec-c--ChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 689999999999999998 5567999999863 12334556553 2 59999999999999 677764 5678899
Q ss_pred HHHHhhhcccc
Q 012743 117 RCVAEYLEMTE 127 (457)
Q Consensus 117 ~~AA~~Lqm~e 127 (457)
+..|+|.++.+
T Consensus 78 ~~Ea~fy~l~~ 88 (94)
T PF02214_consen 78 LEEAEFYGLDE 88 (94)
T ss_dssp HHHHHHHT-HH
T ss_pred HHHHHHcCCCc
Confidence 99999999997
No 19
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.88 E-value=0.0023 Score=54.62 Aligned_cols=79 Identities=16% Similarity=0.349 Sum_probs=60.7
Q ss_pred EEEEE-CCEEEeeccccccccChHHHHhhcCCC--CCCCceEecCCCCCCHHHHHHHHHHHhCCc---------------
Q 012743 44 VTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVSS--EADLSVIEIPDVPGGAEAFELAAKFCYGIN--------------- 105 (457)
Q Consensus 44 V~l~V-~~~~F~~HK~vLaa~S~yfr~mf~~~~--e~~~~~v~L~~~pGg~~~felvl~FcYt~~--------------- 105 (457)
|++.- +|+.|.+.+.+. ..|+-++.|+.... +.....|.|++++ +.+++.+++||+--+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~--~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPLPNVT--SKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccCCCcC--HHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 45554 688999999866 68999999998742 1122578899995 899999999998311
Q ss_pred ----cccCchhHhhHHHHHhhhcc
Q 012743 106 ----FEINTENVAGLRCVAEYLEM 125 (457)
Q Consensus 106 ----i~it~~NV~~L~~AA~~Lqm 125 (457)
+.+..+++..|+.||.||++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCC
Confidence 11666789999999999986
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.10 E-value=0.0037 Score=62.18 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=67.3
Q ss_pred CCCchHHHHhhHHHHhhcCCCeeEEEEECCEEEeeccccccccChHHHHhhcCCCCCC---CceEecCCCCCCHHHHHHH
Q 012743 21 KELLSTAMKRTSEWIFSQEIPSDVTVHVGGTSFSLHKFPLVSKCGYIRKLVSVSSEAD---LSVIEIPDVPGGAEAFELA 97 (457)
Q Consensus 21 ~s~~~~~~~~~~~~~r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~yfr~mf~~~~e~~---~~~v~L~~~pGg~~~felv 97 (457)
..||.-...+..+-........||-|......|++||+.|++++++|+-+...+.+.. ...++..+| ..++|+..
T Consensus 110 aR~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~ag~--dm~~feaf 187 (401)
T KOG2838|consen 110 ARKEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKFAGF--DMDAFEAF 187 (401)
T ss_pred cCcchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhhhcc--ChHHHHHH
Confidence 3444322333333344446778999999999999999999999999999888764332 345667788 48999999
Q ss_pred HHHHhCCcccc---CchhHhhHH
Q 012743 98 AKFCYGINFEI---NTENVAGLR 117 (457)
Q Consensus 98 l~FcYt~~i~i---t~~NV~~L~ 117 (457)
+.+.|+|+.-. .-.|+..|-
T Consensus 188 Lh~l~tgEfgmEd~~fqn~diL~ 210 (401)
T KOG2838|consen 188 LHSLITGEFGMEDLGFQNSDILE 210 (401)
T ss_pred HHHHHhcccchhhcCCchHHHHH
Confidence 99999987643 334444443
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=95.82 E-value=0.031 Score=47.57 Aligned_cols=73 Identities=27% Similarity=0.419 Sum_probs=60.2
Q ss_pred CCEEEeeccccccccChHHHHhhcCC---CCCCCceEecCCCCCCHHHHHHHHHHH-----hCC------ccccCchhHh
Q 012743 49 GGTSFSLHKFPLVSKCGYIRKLVSVS---SEADLSVIEIPDVPGGAEAFELAAKFC-----YGI------NFEINTENVA 114 (457)
Q Consensus 49 ~~~~F~~HK~vLaa~S~yfr~mf~~~---~e~~~~~v~L~~~pGg~~~felvl~Fc-----Yt~------~i~it~~NV~ 114 (457)
+|++|-+-|. .|.-|+-+|+|+.+. .+....+|.+.+|| +..++.+..|. |++ +++|-++=+-
T Consensus 25 Ddhefiikre-~AmtSgTiraml~gpg~~se~~~n~v~f~di~--shiLeKvc~Yl~Yk~rY~~~s~eiPeF~Ippemal 101 (112)
T KOG3473|consen 25 DDHEFIIKRE-HAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIP--SHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMAL 101 (112)
T ss_pred CCcEEEEeeh-hhhhhhHHHHHHcCCccccccccceEEeccch--HHHHHHHHHHhhheeeeccccccCCCCCCCHHHHH
Confidence 5889988665 677799999999975 45666789999997 89999998875 443 4678889999
Q ss_pred hHHHHHhhhc
Q 012743 115 GLRCVAEYLE 124 (457)
Q Consensus 115 ~L~~AA~~Lq 124 (457)
+|+.||+||+
T Consensus 102 eLL~aAn~Le 111 (112)
T KOG3473|consen 102 ELLMAANYLE 111 (112)
T ss_pred HHHHHhhhhc
Confidence 9999999996
No 22
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=94.53 E-value=0.13 Score=39.99 Aligned_cols=55 Identities=16% Similarity=0.363 Sum_probs=43.3
Q ss_pred EEEEE-CCEEEeeccccccccChHHHHhhcCCCCCCCceEecCCCCCCHHHHHHHHHHHh
Q 012743 44 VTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCY 102 (457)
Q Consensus 44 V~l~V-~~~~F~~HK~vLaa~S~yfr~mf~~~~e~~~~~v~L~~~pGg~~~felvl~FcY 102 (457)
|+|.- +|+.|.+.+.+. -.|+.++.|+........ .|.|++++ +.+++.+++||+
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~-~Ipl~~v~--~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE-PIPLPNVS--SRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT-EEEETTS---HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc-ccccCccC--HHHHHHHHHHHH
Confidence 45554 689999988765 479999999987533322 79999994 899999999997
No 23
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.19 Score=46.86 Aligned_cols=89 Identities=13% Similarity=0.258 Sum_probs=68.5
Q ss_pred CCEEEeeccccccccChHHHHhhcCCC-CCCCceEecCCCCCCHHHHHHHHHHHhCCc----------------------
Q 012743 49 GGTSFSLHKFPLVSKCGYIRKLVSVSS-EADLSVIEIPDVPGGAEAFELAAKFCYGIN---------------------- 105 (457)
Q Consensus 49 ~~~~F~~HK~vLaa~S~yfr~mf~~~~-e~~~~~v~L~~~pGg~~~felvl~FcYt~~---------------------- 105 (457)
+|+.|.+-..+ |..|.-++.++.... ......|-|++| .+.+|..|+.|||--+
T Consensus 13 DG~~f~ve~~~-a~~s~~i~~~~~~~~~~~~~~~IPl~nV--~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD 89 (162)
T KOG1724|consen 13 DGEIFEVEEEV-ARQSQTISAHMIEDGCADENDPIPLPNV--TSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWD 89 (162)
T ss_pred CCceeehhHHH-HHHhHHHHHHHHHcCCCccCCccccCcc--CHHHHHHHHHHHHHcccccccccccccccccCCccHHH
Confidence 68899887664 567888899887641 111146888888 5899999999999622
Q ss_pred ---cccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHh
Q 012743 106 ---FEINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (457)
Q Consensus 106 ---i~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v 146 (457)
+.+...++..|.-||.||+|+. |+..||......+
T Consensus 90 ~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mi 127 (162)
T KOG1724|consen 90 AEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMI 127 (162)
T ss_pred HHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHH
Confidence 1134468899999999999996 9999999888875
No 24
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.71 E-value=1.5 Score=44.66 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=79.7
Q ss_pred hhcCCCeeEEEEECCEEEeeccccccccChH-HHHhhcCC----CCCCCceEec-CCCCCCHHHHHHHHHHHhCCccccC
Q 012743 36 FSQEIPSDVTVHVGGTSFSLHKFPLVSKCGY-IRKLVSVS----SEADLSVIEI-PDVPGGAEAFELAAKFCYGINFEIN 109 (457)
Q Consensus 36 r~~~~~~DV~l~V~~~~F~~HK~vLaa~S~y-fr~mf~~~----~e~~~~~v~L-~~~pGg~~~felvl~FcYt~~i~it 109 (457)
+..|-.--++..|++..|-.-+++|-+.-.- +-.||..+ .-.+..+.++ .|+ +...|..|++|--+|.|..-
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVAdGi--~s~vFRAILdYYksG~iRCP 167 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVADGM--TSSCFRAILDYYQSGTMRCP 167 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehhcch--hHHHHHHHHHHHhcCceeCC
Confidence 5566667789999999999999999876433 33566653 2233456776 577 79999999999889988764
Q ss_pred c-hhHhhHHHHHhhhccccccc---------------cchHHHHHHHHHHHHhh
Q 012743 110 T-ENVAGLRCVAEYLEMTEDYA---------------VGNLVGRAEAYLNEVAL 147 (457)
Q Consensus 110 ~-~NV~~L~~AA~~Lqm~e~~~---------------~~NL~~~ce~FL~~~v~ 147 (457)
+ -.|.+|+.|.+||-++=++. .+.-.++-+.||++.++
T Consensus 168 ~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~IL 221 (438)
T KOG3840|consen 168 SSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIIL 221 (438)
T ss_pred CCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 4 56889999999999884432 22345666777777654
No 25
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=88.98 E-value=0.18 Score=50.57 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=40.1
Q ss_pred EEeeccccccccChHHHHhhcCC----CC------CCCceEecCCCCCCHHHHHH-HHHHHhCCccccC
Q 012743 52 SFSLHKFPLVSKCGYIRKLVSVS----SE------ADLSVIEIPDVPGGAEAFEL-AAKFCYGINFEIN 109 (457)
Q Consensus 52 ~F~~HK~vLaa~S~yfr~mf~~~----~e------~~~~~v~L~~~pGg~~~fel-vl~FcYt~~i~it 109 (457)
++.|||.+.+++|++||.++... .| +...+|.+...- =|.+|.. ++.|+||..++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE~I-~PkafA~i~lhclYTD~lDlS 329 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDELI-FPKAFAPIFLHCLYTDRLDLS 329 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechhhh-cchhhhhhhhhhheecccchh
Confidence 57899999999999999987642 11 234567775321 2567765 4688899887764
No 26
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=88.45 E-value=1.2 Score=46.52 Aligned_cols=74 Identities=12% Similarity=0.234 Sum_probs=57.5
Q ss_pred EEEeeccccccccChHHHHhhcCC-CCCC-Cce---EecCCCCCCHHHHHHHHHHHhCCccccCchhHhhHHHHHhhhcc
Q 012743 51 TSFSLHKFPLVSKCGYIRKLVSVS-SEAD-LSV---IEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRCVAEYLEM 125 (457)
Q Consensus 51 ~~F~~HK~vLaa~S~yfr~mf~~~-~e~~-~~~---v~L~~~pGg~~~felvl~FcYt~~i~it~~NV~~L~~AA~~Lqm 125 (457)
..+|||+.++ ++..||+.||++. .|+. +.. ..++++ .....|.+++|.|+-+-+|-++-...++--|..|-+
T Consensus 301 ~RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~--~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal 377 (516)
T KOG0511|consen 301 DRYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSL--ADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLAL 377 (516)
T ss_pred ccccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchH--HHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhh
Confidence 4599999987 5678999999997 5532 222 234445 478899999999999999988888888888888877
Q ss_pred cc
Q 012743 126 TE 127 (457)
Q Consensus 126 ~e 127 (457)
..
T Consensus 378 ~~ 379 (516)
T KOG0511|consen 378 AD 379 (516)
T ss_pred hh
Confidence 64
No 27
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=87.56 E-value=1.6 Score=46.28 Aligned_cols=82 Identities=20% Similarity=0.152 Sum_probs=60.9
Q ss_pred EEEEECCEEEeeccccccccC--hHHHHhhcCC--CCCCCceEecCCCCCCHHHHHHHHHHHhCCccccCchhHhhHHH-
Q 012743 44 VTVHVGGTSFSLHKFPLVSKC--GYIRKLVSVS--SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGLRC- 118 (457)
Q Consensus 44 V~l~V~~~~F~~HK~vLaa~S--~yfr~mf~~~--~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it~~NV~~L~~- 118 (457)
|.+.|||+.|.--+.-|+... .+|.+|+++. .........+-| -.|+.|..+++|.-|+++.+..--...++-
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFID--RDPdlFaviLn~LRTg~L~~~g~~~~~llhd 90 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFID--RDPDLFAVILNLLRTGDLDASGVFPERLLHD 90 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEec--CCchHHHHHHHHHhcCCCCCccCchhhhhhh
Confidence 678999999999999887765 6899999864 222222222322 358999999999999999995544444444
Q ss_pred HHhhhcccc
Q 012743 119 VAEYLEMTE 127 (457)
Q Consensus 119 AA~~Lqm~e 127 (457)
=|.|.++++
T Consensus 91 EA~fYGl~~ 99 (465)
T KOG2714|consen 91 EAMFYGLTP 99 (465)
T ss_pred hhhhcCcHH
Confidence 899999997
No 28
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.59 E-value=0.86 Score=45.51 Aligned_cols=89 Identities=13% Similarity=0.025 Sum_probs=68.7
Q ss_pred CEEEeeccccccccChHHHHhhcCC-CCCCCceEecCCCCCCHHHHHHHHHHHhCCccccCchhHh---hHHHHHhhhcc
Q 012743 50 GTSFSLHKFPLVSKCGYIRKLVSVS-SEADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVA---GLRCVAEYLEM 125 (457)
Q Consensus 50 ~~~F~~HK~vLaa~S~yfr~mf~~~-~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it~~NV~---~L~~AA~~Lqm 125 (457)
+..+..|+.+++++|+-|+.|+... .+.....+.+.+. +++.++.+..|.|+..-.-+..++. .++++|...+.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~~d~--~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~ 186 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITLLEE--KPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKN 186 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhcccccccccc--chhhHhhhceEEEeccchHHHHHhhcCChhhhhcccccc
Confidence 5569999999999999999999876 2233344466676 5889999999999865444455554 77778777777
Q ss_pred ccccccchHHHHHHHHHHHHh
Q 012743 126 TEDYAVGNLVGRAEAYLNEVA 146 (457)
Q Consensus 126 ~e~~~~~NL~~~ce~FL~~~v 146 (457)
.. |...|...|.+.+
T Consensus 187 ~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 187 RH------LKLACMPVLLSLI 201 (297)
T ss_pred HH------HHHHHHHHHHHHH
Confidence 75 9999999999875
No 29
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=82.07 E-value=1.5 Score=35.52 Aligned_cols=34 Identities=18% Similarity=0.434 Sum_probs=28.2
Q ss_pred ccCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHh
Q 012743 107 EINTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (457)
Q Consensus 107 ~it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v 146 (457)
.++...+..|+.||.||+|+. |++.|+.++...+
T Consensus 10 ~~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i 43 (78)
T PF01466_consen 10 DVDNDELFDLLNAANYLDIKG------LLDLCCKYIANMI 43 (78)
T ss_dssp -S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHh
Confidence 346678999999999999997 9999999998876
No 30
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=76.36 E-value=9.3 Score=37.63 Aligned_cols=88 Identities=17% Similarity=0.240 Sum_probs=67.5
Q ss_pred EEEEECCEEEeecccccccc--ChHHHHhhcCC----CCCCCceEecCCCCCCHHHHHHHHHHHhCCccc-cCchhHhhH
Q 012743 44 VTVHVGGTSFSLHKFPLVSK--CGYIRKLVSVS----SEADLSVIEIPDVPGGAEAFELAAKFCYGINFE-INTENVAGL 116 (457)
Q Consensus 44 V~l~V~~~~F~~HK~vLaa~--S~yfr~mf~~~----~e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~-it~~NV~~L 116 (457)
|.+.+||+.|.--..-|.-+ =.-+-+||.+. .+.++.-+-|.- +|.-||-|+.|.-.|.+. .+.-|+-.+
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lIDR---sp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLIDR---SPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEEcc---CchhhHHHHHHHhcCceeecCCccHHHH
Confidence 56789999999888777766 34688899874 334444444432 589999999999988764 566889999
Q ss_pred HHHHhhhccccccccchHHHHHHH
Q 012743 117 RCVAEYLEMTEDYAVGNLVGRAEA 140 (457)
Q Consensus 117 ~~AA~~Lqm~e~~~~~NL~~~ce~ 140 (457)
+.+|.|+|+-. |++.-++
T Consensus 88 LeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHhhHHhhHh------HHhHHhh
Confidence 99999999986 7776665
No 31
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=76.24 E-value=2 Score=45.04 Aligned_cols=93 Identities=14% Similarity=0.030 Sum_probs=57.0
Q ss_pred HhhHHHHhhcCCC--eeEEEEE-CCEEEeeccccccccChHHHHhhcCCCCCCCceE-ecCCCCCCHHHHHHHHHHHhCC
Q 012743 29 KRTSEWIFSQEIP--SDVTVHV-GGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVI-EIPDVPGGAEAFELAAKFCYGI 104 (457)
Q Consensus 29 ~~~~~~~r~~~~~--~DV~l~V-~~~~F~~HK~vLaa~S~yfr~mf~~~~e~~~~~v-~L~~~pGg~~~felvl~FcYt~ 104 (457)
..-++-++.+++- .|++..+ +|..|-+||+.|+++|.||..-+..---+ ..+| .+.-+ +.+|+..++|.|-.
T Consensus 135 ahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~-~heI~~~~v~---~~~f~~flk~lyl~ 210 (516)
T KOG0511|consen 135 AHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ-GHEIEAHRVI---LSAFSPFLKQLYLN 210 (516)
T ss_pred hHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc-cCchhhhhhh---HhhhhHHHHHHHHh
Confidence 3345667787773 3887766 48899999999999998876433221001 1233 33445 78999999999965
Q ss_pred ccccCchhHhhHHHHHhhhcc
Q 012743 105 NFEINTENVAGLRCVAEYLEM 125 (457)
Q Consensus 105 ~i~it~~NV~~L~~AA~~Lqm 125 (457)
.-.+-+.--.+|+....-++.
T Consensus 211 ~na~~~~qynallsi~~kF~~ 231 (516)
T KOG0511|consen 211 TNAEWKDQYNALLSIEVKFSK 231 (516)
T ss_pred hhhhhhhHHHHHHhhhhhccH
Confidence 222222222445544444444
No 32
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=68.32 E-value=21 Score=33.69 Aligned_cols=96 Identities=18% Similarity=0.166 Sum_probs=70.2
Q ss_pred eeEEEEECCEEEeeccccccccCh-HHHHhhcCCC----CCCCceEecCCCCCCHHHHHHHHHHHhCCccccCchhHhhH
Q 012743 42 SDVTVHVGGTSFSLHKFPLVSKCG-YIRKLVSVSS----EADLSVIEIPDVPGGAEAFELAAKFCYGINFEINTENVAGL 116 (457)
Q Consensus 42 ~DV~l~V~~~~F~~HK~vLaa~S~-yfr~mf~~~~----e~~~~~v~L~~~pGg~~~felvl~FcYt~~i~it~~NV~~L 116 (457)
.=|-+.|||..|.--|.-|.--+. ++.++....+ +.+..---|-|= .|.-|.-|++|.--|++-++.-.=+.+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYlIDR--DP~~FgpvLNylRhgklvl~~l~eeGv 98 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYLIDR--DPFYFGPVLNYLRHGKLVLNKLSEEGV 98 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceEecc--CcchHHHHHHHHhcchhhhhhhhhhcc
Confidence 345678999999999999998884 4445554432 222222334333 589999999999999999999666778
Q ss_pred HHHHhhhccccccccchHHHHHHHHHHHH
Q 012743 117 RCVAEYLEMTEDYAVGNLVGRAEAYLNEV 145 (457)
Q Consensus 117 ~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~ 145 (457)
+.-|+|...+. |+....+-+.+.
T Consensus 99 L~EAefyn~~~------li~likd~i~dR 121 (210)
T KOG2715|consen 99 LEEAEFYNDPS------LIQLIKDRIQDR 121 (210)
T ss_pred chhhhccCChH------HHHHHHHHHHHH
Confidence 99999999996 777666665554
No 33
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=67.74 E-value=20 Score=32.46 Aligned_cols=90 Identities=18% Similarity=0.296 Sum_probs=64.9
Q ss_pred EECCEEEeeccccccccChHHHHhhcCCCCCCCceEecCCCCCCHHHHHHHHHHHhCCc---------ccc---------
Q 012743 47 HVGGTSFSLHKFPLVSKCGYIRKLVSVSSEADLSVIEIPDVPGGAEAFELAAKFCYGIN---------FEI--------- 108 (457)
Q Consensus 47 ~V~~~~F~~HK~vLaa~S~yfr~mf~~~~e~~~~~v~L~~~pGg~~~felvl~FcYt~~---------i~i--------- 108 (457)
..+|+.|.+.+. .|-+|-.++.|+....+.+ ..+.++++ .+..|..+.+||---+ ++|
T Consensus 8 s~dge~F~vd~~-iAerSiLikN~l~d~~~~n-~p~p~pnV--rSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~w 83 (158)
T COG5201 8 SIDGEIFRVDEN-IAERSILIKNMLCDSTACN-YPIPAPNV--RSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFW 83 (158)
T ss_pred ecCCcEEEehHH-HHHHHHHHHHHhccccccC-CCCcccch--hHHHHHHHHHHHHhccccCCCccChHhhhccCCccHH
Confidence 346889999776 5788999999988754433 23445666 5899999999996311 111
Q ss_pred -------CchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHh
Q 012743 109 -------NTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVA 146 (457)
Q Consensus 109 -------t~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v 146 (457)
...-+-.+.-||.||++.. |++.||.-..+.+
T Consensus 84 dr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemi 122 (158)
T COG5201 84 DRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMI 122 (158)
T ss_pred HHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHH
Confidence 2234567788999999998 8999988887765
No 34
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=54.89 E-value=33 Score=37.24 Aligned_cols=94 Identities=17% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCCeeEEEEECCEEEeecccccccc-ChHHHHhhcCCC-----------CCCCceEecCCCCCCHHHHHHHHHHHhCCcc
Q 012743 39 EIPSDVTVHVGGTSFSLHKFPLVSK-CGYIRKLVSVSS-----------EADLSVIEIPDVPGGAEAFELAAKFCYGINF 106 (457)
Q Consensus 39 ~~~~DV~l~V~~~~F~~HK~vLaa~-S~yfr~mf~~~~-----------e~~~~~v~L~~~pGg~~~felvl~FcYt~~i 106 (457)
....-|+|+|||..+.+-+..|... =.++.++..... +....+.-+ +-.|.+|..|++|-+||++
T Consensus 28 ~~~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~~l~~cDdyd~~~~EyfF---DR~P~~F~~Vl~fYrtGkL 104 (477)
T KOG3713|consen 28 ALDRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEERLELCDDYDPVTNEYFF---DRHPGAFAYVLNFYRTGKL 104 (477)
T ss_pred CcCcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchhhhhhccccCcccCeeee---ccChHHHHHHHHHHhcCee
Confidence 4455789999999999988777652 123333333110 122334443 3458899999999999999
Q ss_pred ccCchhHhhHH--HHHhhhccccccccchHHHHHHHH
Q 012743 107 EINTENVAGLR--CVAEYLEMTEDYAVGNLVGRAEAY 141 (457)
Q Consensus 107 ~it~~NV~~L~--~AA~~Lqm~e~~~~~NL~~~ce~F 141 (457)
.. +.+++.+. .=-+|.++++ +-++.||.-
T Consensus 105 H~-p~~vC~~~F~eEL~yWgI~~-----~~le~CC~~ 135 (477)
T KOG3713|consen 105 HV-PADVCPLSFEEELDYWGIDE-----AHLESCCWM 135 (477)
T ss_pred cc-ccccchHHHHHHHHHhCCCh-----hhhhHHhHH
Confidence 98 55665543 3347888887 567776643
No 35
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=44.60 E-value=91 Score=30.65 Aligned_cols=80 Identities=15% Similarity=0.142 Sum_probs=57.8
Q ss_pred EEEEECCEEEeeccc-cccccChHHHHhhcCC---CCCCCceEec-CCCCCCHHHHHHHHHHHhCCccccCc--hhHhhH
Q 012743 44 VTVHVGGTSFSLHKF-PLVSKCGYIRKLVSVS---SEADLSVIEI-PDVPGGAEAFELAAKFCYGINFEINT--ENVAGL 116 (457)
Q Consensus 44 V~l~V~~~~F~~HK~-vLaa~S~yfr~mf~~~---~e~~~~~v~L-~~~pGg~~~felvl~FcYt~~i~it~--~NV~~L 116 (457)
|.|.|||+.|.--.. ...=.-..+.+||++. .........| .| ...|.-+++|.=|..+.+.. .++..|
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fIDRD----G~lFRyvL~~LRt~~l~lpe~f~e~~~L 86 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFIDRD----GFLFRYVLDYLRTKALLLPEDFAEVERL 86 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEEcCC----cchHHHHHHHhcccccccchhhhhHHHH
Confidence 678899998885444 2223355778888853 1222345555 23 35999999999997777766 899999
Q ss_pred HHHHhhhcccc
Q 012743 117 RCVAEYLEMTE 127 (457)
Q Consensus 117 ~~AA~~Lqm~e 127 (457)
..=|+|.|++.
T Consensus 87 ~rEA~f~~l~~ 97 (221)
T KOG2723|consen 87 VREAEFFQLEA 97 (221)
T ss_pred HHHHHHHcccc
Confidence 99999999996
No 36
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=37.57 E-value=21 Score=27.71 Aligned_cols=18 Identities=11% Similarity=0.148 Sum_probs=15.6
Q ss_pred chhHHHHHHHhhccchhh
Q 012743 432 GMYRAIDIYLKVHYEQFL 449 (457)
Q Consensus 432 gLYrAIDiYLk~Hp~l~~ 449 (457)
-||.|+.-||+.||+--+
T Consensus 9 ~L~~~m~~fie~hP~WDQ 26 (57)
T PF10929_consen 9 DLHQAMKDFIETHPNWDQ 26 (57)
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 589999999999998643
No 37
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=35.11 E-value=19 Score=38.47 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=64.6
Q ss_pred cCchhHhhHHHHHhhhccccccccchHHHHHHHHHHHHhhhchhhHHHHHhhhhchHHHHHHh---chhhHHHHHHHHHH
Q 012743 108 INTENVAGLRCVAEYLEMTEDYAVGNLVGRAEAYLNEVALTSLTGAVTVLHKSQGLLPIAEKV---KLVGQCIDAIAYIA 184 (457)
Q Consensus 108 it~~NV~~L~~AA~~Lqm~e~~~~~NL~~~ce~FL~~~v~~sw~~~i~~l~~C~~l~~~Ae~~---~iv~rCidsLa~ka 184 (457)
+.-+||+.++-||.+.|+++ |.+.|..|+.+... .+-.-.++..+..+. -+.+.|.-+.-.+.
T Consensus 145 L~~~NvCmifdaA~ly~l~~------Lt~~C~mfmDrnA~--------~lL~~~sFn~LSk~sL~e~l~RDsFfApE~~I 210 (620)
T KOG4350|consen 145 LKNENVCMIFDAAYLYQLTD------LTDYCMMFMDRNAD--------QLLEDPSFNRLSKDSLKELLARDSFFAPELKI 210 (620)
T ss_pred HcccceeeeeeHHHHhcchH------HHHHHHHHHhcCHH--------hhhcCcchhhhhHHHHHHHHhhhcccchHHHH
Confidence 56699999999999999998 99999999987641 111122222222211 01111111111111
Q ss_pred hhccccCCCCCCCCCCCCccccCCCCCCcccccchhhcccCChHHHHHHHHHHHhcCC-CchhHHHHHHH
Q 012743 185 CKENQFSGSGRAESGTDNAISDMVSHPKTIVDWWAEDLTVLRIDVFQRVLIAMMARGF-KQYALGPVLML 253 (457)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ww~eDl~~L~~d~~~rvI~a~~~~~~-~ee~v~~al~~ 253 (457)
. ...-.|...|. +..+ + -.=++..||+-.++.++...+..|+ +++.|..|+--
T Consensus 211 F--lAv~~W~~~Ns-----------ke~~-k--~~~~~VRLPLm~lteLLnvVRPsGllspD~iLDAI~v 264 (620)
T KOG4350|consen 211 F--LAVRSWHQNNS-----------KEAS-K--VLLELVRLPLMTLTELLNVVRPSGLLSPDTILDAIEV 264 (620)
T ss_pred H--HHHHHHHhcCc-----------hhhH-H--HHHHHHhhhhccHHHHHhccCcccCcCHHHHHHHHHh
Confidence 0 00112321111 0010 0 0235567888888888888888886 88888887754
No 38
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=33.99 E-value=28 Score=33.84 Aligned_cols=30 Identities=20% Similarity=0.350 Sum_probs=23.7
Q ss_pred HhcC--CccccCCCchhHHHHHHHhhccchhh
Q 012743 420 ELIP--EQSRITEDGMYRAIDIYLKVHYEQFL 449 (457)
Q Consensus 420 e~lP--d~aR~~~DgLYrAIDiYLk~Hp~l~~ 449 (457)
+-+| +..+..-+|=|+||.-|||.||+=++
T Consensus 184 ~dlp~~~~p~~~g~gP~~AVe~ylr~~p~~yE 215 (237)
T COG3510 184 NDLPGPVLPWRFGGGPYEAVEAYLREFPQDYE 215 (237)
T ss_pred cCCCCcccchhcCCChHHHHHHHHHhCCcccc
Confidence 4455 66666799999999999999995443
No 39
>PHA00617 ribbon-helix-helix domain containing protein
Probab=24.12 E-value=1.1e+02 Score=25.35 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=31.6
Q ss_pred ccCChHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhh
Q 012743 223 TVLRIDVFQRVLIAMMARGF-KQYALGPVLMLYAQKS 258 (457)
Q Consensus 223 ~~L~~d~~~rvI~a~~~~~~-~ee~v~~al~~yak~~ 258 (457)
..||.++.+++-...+..|. +++.|-+|+..|+..|
T Consensus 44 VrLp~eL~erLD~LA~~~GrsRSelIreAI~~YLee~ 80 (80)
T PHA00617 44 FKLPPELNAKLEQVAIKMKKSKSEIIREALEKYLEEV 80 (80)
T ss_pred EECCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHhC
Confidence 57999999999888888776 8999999999999776
No 40
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=88 Score=33.94 Aligned_cols=59 Identities=22% Similarity=0.287 Sum_probs=42.7
Q ss_pred hhhHHHhhhhhhhhhhcCCC----------------CCChhHHHHHHHhcCCccc-----cCCCc---------hhHHHH
Q 012743 389 DMERVGKLMENYLAEIATDR----------------NLSVAKFISLAELIPEQSR-----ITEDG---------MYRAID 438 (457)
Q Consensus 389 ~~~~VakLvD~YLaEiA~D~----------------~L~~~kF~~Lae~lPd~aR-----~~~Dg---------LYrAID 438 (457)
...+|.+.+-.+|.+++.+| +|++-.|..++|-.-++.+ .+.|. +|||+|
T Consensus 344 D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~~s~~~~~~~~~~e~~~~~~~~~~~lRavd 423 (523)
T KOG2016|consen 344 DALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYEKSITELIKYSSNENYSNEIGFYLLLRAVD 423 (523)
T ss_pred hHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhcccchhhhhhccccccchhHHHHHHHHHHH
Confidence 45688999999999999984 4555666667776554444 33334 699999
Q ss_pred HHHhhccch
Q 012743 439 IYLKVHYEQ 447 (457)
Q Consensus 439 iYLk~Hp~l 447 (457)
.||+.|-..
T Consensus 424 rfl~~~gk~ 432 (523)
T KOG2016|consen 424 RFLKEKGKY 432 (523)
T ss_pred HHHHHhcCC
Confidence 999988654
No 41
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=22.31 E-value=55 Score=38.03 Aligned_cols=75 Identities=24% Similarity=0.468 Sum_probs=50.0
Q ss_pred ccccCCCCCCccccHHHHHHHHHHHhccccCCCCCccCCCCCCCCCCchhhhHHHhhhhhhhhhhcCCCCCChhHHHHHH
Q 012743 340 LIPAYSFTGDTLFDVDTVHRILMNYLDYQVDGNRLSFSGDNEYVSSPLSDMERVGKLMENYLAEIATDRNLSVAKFISLA 419 (457)
Q Consensus 340 LiPs~~~~~~~~yDVd~V~ril~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEiA~D~~L~~~kF~~La 419 (457)
+||...|+ +.+.+.-++++|-..-. +|.|=.+..+|..+.+..|..++
T Consensus 252 iLP~Lt~G-----~~e~m~~Lv~~F~p~l~---------------------------f~~~D~~~~~~~~~~Le~F~~i~ 299 (802)
T PF13764_consen 252 ILPFLTYG-----NEEKMDALVEHFKPYLD---------------------------FDKFDEEHSPDEQFKLECFCEIA 299 (802)
T ss_pred HhhHHhcC-----CHHHHHHHHHHHHHhcC---------------------------hhhcccccCchHHHHHHHHHHHH
Confidence 45766543 67889999999953211 33333344566677899999999
Q ss_pred HhcCCcc-------ccCCCchhH-HHHHHHh-hccch
Q 012743 420 ELIPEQS-------RITEDGMYR-AIDIYLK-VHYEQ 447 (457)
Q Consensus 420 e~lPd~a-------R~~~DgLYr-AIDiYLk-~Hp~l 447 (457)
+.+|.++ -...=|+.. |++ ||+ .+|..
T Consensus 300 ~~I~~~~~G~~LK~~Il~~GIv~~a~~-YL~~~~P~~ 335 (802)
T PF13764_consen 300 EGIPNNSNGNRLKDKILESGIVQDAID-YLLKHFPSL 335 (802)
T ss_pred hcCCCCCchHHHHHHHHHhhHHHHHHH-HHHHhCccc
Confidence 9999877 233456777 888 665 45554
No 42
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=22.28 E-value=50 Score=27.13 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=14.1
Q ss_pred CchhHHHHHHHhhccc
Q 012743 431 DGMYRAIDIYLKVHYE 446 (457)
Q Consensus 431 DgLYrAIDiYLk~Hp~ 446 (457)
=+||-||+-||+.|..
T Consensus 31 PQLYnAI~k~L~RHkF 46 (82)
T PF11123_consen 31 PQLYNAIGKLLDRHKF 46 (82)
T ss_pred hHHHHHHHHHHHHccc
Confidence 4799999999999964
No 43
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=21.88 E-value=54 Score=27.64 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=21.5
Q ss_pred hcCCccccCCCchhHHHHHHHhhccch
Q 012743 421 LIPEQSRITEDGMYRAIDIYLKVHYEQ 447 (457)
Q Consensus 421 ~lPd~aR~~~DgLYrAIDiYLk~Hp~l 447 (457)
.+|++..-....+|+|+.+||.+....
T Consensus 29 ~I~E~~g~~~N~ly~a~~~YL~s~~s~ 55 (98)
T PF14363_consen 29 VIPEFDGLSRNELYDAAQAYLSSKISP 55 (98)
T ss_pred EEEeCCCccccHHHHHHHHHHhhccCc
Confidence 456666677889999999999987654
Done!